BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8735
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P2W1|HOP2_HUMAN Homologous-pairing protein 2 homolog OS=Homo sapiens GN=PSMC3IP
PE=1 SV=1
Length = 217
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 9 SKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKM 68
++LK+LS +T E +++ EL+ E + +L+ + N ++ E K+ + ++K
Sbjct: 112 AELKELSSALTTPEMQKEIQELKKECAGYRERLKNIKAATNHVTPEE--KEQVYRERQKY 169
Query: 69 VKEYNKRKRMCTEMLEAILENYPKSKKILLEEVGIETDE 107
KE+ KRKRM TE+ +AILE YPKSKK EEVGIETDE
Sbjct: 170 CKEWRKRKRMATELSDAILEGYPKSKKQFFEEVGIETDE 208
>sp|O35047|HOP2_MOUSE Homologous-pairing protein 2 homolog OS=Mus musculus GN=Psmc3ip
PE=1 SV=1
Length = 217
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 9 SKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKM 68
++LK+L+ +T E +++ EL+ E + +L+ + N ++ E K+ + ++K
Sbjct: 112 AELKELTSALTTPEMQKEIQELKKECAQYTERLKNIKAATNHVTPEE--KEKVYRDRQKY 169
Query: 69 VKEYNKRKRMCTEMLEAILENYPKSKKILLEEVGIETDE 107
KE+ KRKRM TE+ +AILE YPKSKK EEVGIETDE
Sbjct: 170 CKEWRKRKRMTTELCDAILEGYPKSKKQFFEEVGIETDE 208
>sp|Q63ZL2|HOP2_XENLA Homologous-pairing protein 2 homolog OS=Xenopus laevis GN=psmc3ip
PE=2 SV=1
Length = 214
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 63/102 (61%), Gaps = 2/102 (1%)
Query: 6 KVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTK 65
+++S+LK L+ +T E ++ + L+ E + + KL + N ++ E K+ + +
Sbjct: 106 QLESELKDLTSSLTTEEMLKEVSCLKEECDRHEHKLTNIKSATNHVTPAE--KEKVYGER 163
Query: 66 EKMVKEYNKRKRMCTEMLEAILENYPKSKKILLEEVGIETDE 107
+ KE+ KRKRM T++ +AILE YPKSKK EEVG+ETDE
Sbjct: 164 KHFCKEWKKRKRMATDIFDAILEGYPKSKKQFFEEVGVETDE 205
>sp|Q91ZY6|HOP2_RAT Homologous-pairing protein 2 homolog OS=Rattus norvegicus
GN=Psmc3ip PE=1 SV=1
Length = 217
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Query: 9 SKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKM 68
++LK+L+ +T E + + EL+ E +L+ + N ++ E K+ + ++K
Sbjct: 112 AELKELTSALTTPEMQTEIQELKKECARYTERLKNIKAATNHVTPEE--KEKVYRERQKY 169
Query: 69 VKEYNKRKRMCTEMLEAILENYPKSKKILLEEVGIETDE 107
KE+ KRKRM TE+ +AILE YPKSKK EEVGIETDE
Sbjct: 170 CKEWRKRKRMTTELCDAILEGYPKSKKQFFEEVGIETDE 208
>sp|Q9FX64|HOP2_ARATH Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana
GN=HOP2 PE=1 SV=1
Length = 226
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 7 VKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKE 66
V+S++K L +T E ++K A+L+ E++E + KL KL + ++ DKK + D
Sbjct: 105 VESEIKSLQSNLTLEEIQEKDAKLRKEVKEMEEKLVKLREGITLVRPE--DKKAVEDMYA 162
Query: 67 KMVKEYNKRKRMCTEMLEAILENYPKSKKILLEEVGIETDEMVSM 111
+ ++ KRKRM ++ + + EN PK K L EE+GIE DE V +
Sbjct: 163 DKINQWRKRKRMFRDIWDTVTENSPKDVKELKEELGIEYDEDVGL 207
>sp|Q54UM1|HOP2_DICDI Homologous-pairing protein 2 homolog OS=Dictyostelium discoideum
GN=hop2 PE=3 SV=1
Length = 243
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
Query: 9 SKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKM 68
S+ KQL+ Q+++ + +++ +L E +E +SKL + ++S+ DK+ + DT +K
Sbjct: 115 SQSKQLNNQLSDEQIQKEVNQLSTENKELESKLLTF-QTKEIMSDK--DKQRLDDTIKKA 171
Query: 69 VKEYNKRKRMCTEMLEAILENYPKSKKILLEEVGIETDE 107
E+ KRK + ++L+ +LE K KK L E++G ETDE
Sbjct: 172 RSEWVKRKALFRDILDQVLERSNKKKKDLQEDIGWETDE 210
>sp|Q9ULM0|PKHH1_HUMAN Pleckstrin homology domain-containing family H member 1 OS=Homo
sapiens GN=PLEKHH1 PE=2 SV=2
Length = 1364
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 12/97 (12%)
Query: 4 KEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITD 63
+E + K+++L Q++ EAE + + AE Q + E+K KL L NV SEG + +K
Sbjct: 36 RELLADKMQELEQRLLEAEQRAENAETQVGVMEEKVKLSNLK---NVDSEGSLHRKY--- 89
Query: 64 TKEKMVKEYNKRKRMCTEMLEAILENYPKSKKILLEE 100
++++K + + ++ LEA LE K K++ EE
Sbjct: 90 --QELLKAIKGKDELISQ-LEAQLE---KQKQMRAEE 120
>sp|Q6PDH0|PHLB1_MOUSE Pleckstrin homology-like domain family B member 1 OS=Mus musculus
GN=Phldb1 PE=1 SV=1
Length = 1371
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 5 EKVKSKLKQLSQQMTEA--EAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKT 60
E++K ++K+L QQ+ EA EA+ ++A LQ E E +++ L+K R V+ + E V +T
Sbjct: 733 EQLKIRVKELEQQLQEAAREAEMERALLQGEREAERASLQKEQRAVDQLQEKLVALET 790
>sp|Q9HGK2|HOP2_SCHPO Homologous-pairing protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=meu13 PE=1 SV=1
Length = 216
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 11 LKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNV--ISEGEVDKKTITDTKEKM 68
L+ L+ ++ AE ++K + E+EE SKLE L RN V IS+ + K TD
Sbjct: 117 LQALNNSLSPAEIREKIQSIDKEIEETSSKLESL-RNGTVKQISKEAMQK---TDKNYDF 172
Query: 69 VKE-YNKRKRMCTEMLEAI---LENYPKSKKILLEEVGIETDEMVSM 111
K+ ++ RK+M ++ I LEN PK L E++G ET+ + +
Sbjct: 173 AKKGFSNRKKMFYDLWHLITDSLEN-PKQ---LWEKLGFETEGPIDL 215
>sp|Q9UPT6|JIP3_HUMAN C-Jun-amino-terminal kinase-interacting protein 3 OS=Homo sapiens
GN=MAPK8IP3 PE=1 SV=3
Length = 1336
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 5 EKVKSKLKQLSQQMTEAE--AKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTIT 62
E+ K+ +Q ++ E E +Q+K ELQ ++E E +R + + ++ D+ +
Sbjct: 95 EREKALRRQAEEKFIEFEDALEQEKKELQIQVEH----YEFQTRQLELKAKNYADQISRL 150
Query: 63 DTKE-KMVKEYNKRKRMCTEMLEAILENYPKSKKILLEEVG 102
+ +E +M KEYN + TEM++ +E+ +SK +++VG
Sbjct: 151 EERESEMKKEYNALHQRHTEMIQTYVEHIERSK---MQQVG 188
>sp|Q9KPW1|SKP_VIBCH Chaperone protein skp OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=skp PE=3 SV=1
Length = 169
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 16 QQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTI 61
Q+M E E K K AELQA + K+K+EKL R+ ++ + EV+K I
Sbjct: 50 QKMQE-EFKDKAAELQAIQADAKTKIEKLKRDGQLMGQDEVEKLRI 94
>sp|P47288|POTA_MYCGE Spermidine/putrescine import ATP-binding protein PotA OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=potA PE=3 SV=2
Length = 559
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Query: 5 EKVKSKLKQ--LSQQMTEAEAKQ---KKAELQAELEEKKSK--LEKLSRNVNVISEGEVD 57
EKV++K K+ Q +E KQ KK EL+A+++ K+K ++KL++ + + + +
Sbjct: 215 EKVENKYKKDPWFFQHSEIRLKQYQKKKTELKADIKATKNKEQIQKLTKELQTLKQKYAN 274
Query: 58 KKTITDTKEKMVKEYNKRKRMCT 80
KK I +K+V YNK+ +
Sbjct: 275 KKAIDKEYDKLVVAYNKKDYWTS 297
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.302 0.120 0.290
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,992,956
Number of Sequences: 539616
Number of extensions: 1341414
Number of successful extensions: 17914
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 1390
Number of HSP's that attempted gapping in prelim test: 13877
Number of HSP's gapped (non-prelim): 4670
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)