Query psy8735
Match_columns 115
No_of_seqs 108 out of 140
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 17:53:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3viq_B Mating-type switching p 98.0 0.00014 4.7E-09 47.4 10.1 84 19-107 2-85 (85)
2 2oa5_A Hypothetical protein BQ 93.9 0.2 6.8E-06 33.8 6.3 50 16-67 6-58 (110)
3 3onj_A T-snare VTI1; helix, HA 88.5 3.5 0.00012 26.5 8.5 75 7-84 17-94 (97)
4 1hs7_A Syntaxin VAM3; UP-and-D 84.4 4.9 0.00017 26.2 6.8 66 4-77 19-85 (97)
5 2qyw_A Vesicle transport throu 84.1 6.6 0.00023 25.4 8.5 70 6-77 30-99 (102)
6 3viq_A SWI5-dependent recombin 83.0 4.3 0.00015 27.5 6.4 78 22-107 4-110 (122)
7 4i0x_A ESAT-6-like protein MAB 81.1 4.9 0.00017 25.1 5.8 58 25-91 14-71 (94)
8 4fi5_A Nucleoprotein; structur 80.6 11 0.00036 25.4 7.5 91 16-109 20-110 (113)
9 3oa7_A Head morphogenesis prot 80.5 6.1 0.00021 29.1 6.8 52 4-57 32-84 (206)
10 1g6u_A Domain swapped dimer; d 78.0 7 0.00024 21.8 5.0 38 5-46 3-41 (48)
11 3a7p_A Autophagy protein 16; c 77.8 11 0.00039 26.5 7.3 27 55-83 118-144 (152)
12 1vcs_A Vesicle transport throu 76.5 13 0.00043 24.0 7.4 74 7-83 21-94 (102)
13 3nmd_A CGMP dependent protein 76.5 8.7 0.0003 23.8 5.7 27 20-46 42-68 (72)
14 4dzn_A Coiled-coil peptide CC- 76.2 6.2 0.00021 20.4 4.1 25 22-46 6-30 (33)
15 2yy0_A C-MYC-binding protein; 75.5 3.2 0.00011 24.2 3.3 23 23-45 24-46 (53)
16 2zvf_A Alanyl-tRNA synthetase; 73.6 5.5 0.00019 27.3 4.8 42 4-45 9-52 (171)
17 1gd2_E Transcription factor PA 73.1 5.8 0.0002 24.3 4.2 39 4-44 31-69 (70)
18 2dgc_A Protein (GCN4); basic d 72.2 6.8 0.00023 23.4 4.3 27 20-46 32-58 (63)
19 1wt6_A Myotonin-protein kinase 71.5 5.2 0.00018 25.4 3.8 46 4-51 33-79 (81)
20 1dh3_A Transcription factor CR 71.2 8 0.00027 22.4 4.4 27 20-46 24-50 (55)
21 2lw1_A ABC transporter ATP-bin 70.3 2.9 0.0001 26.4 2.5 22 21-42 25-46 (89)
22 2l5g_B Putative uncharacterize 68.7 5.8 0.0002 22.2 3.2 28 18-45 2-29 (42)
23 1t2k_D Cyclic-AMP-dependent tr 68.5 15 0.00051 21.4 5.5 26 20-45 24-49 (61)
24 1p9i_A Cortexillin I/GCN4 hybr 68.1 7 0.00024 20.0 3.1 24 22-45 3-26 (31)
25 2xze_Q Charged multivesicular 65.5 4.7 0.00016 22.3 2.3 15 32-46 26-40 (40)
26 1ci6_A Transcription factor AT 64.3 20 0.00067 21.2 5.4 26 20-45 25-50 (63)
27 2oqq_A Transcription factor HY 63.9 15 0.0005 20.5 4.2 24 22-45 7-30 (42)
28 4i0x_B ESAT-6-like protein MAB 63.4 22 0.00075 22.3 5.7 62 21-89 21-82 (103)
29 3zbh_A ESXA; unknown function, 62.7 23 0.00078 21.4 6.4 73 18-92 9-81 (99)
30 1ci6_A Transcription factor AT 62.5 14 0.00048 21.8 4.3 36 4-41 25-60 (63)
31 2pnv_A Small conductance calci 62.4 15 0.00052 20.5 4.1 26 21-46 12-37 (43)
32 3pdy_A Plectin; cytoskeleton, 60.7 40 0.0014 23.6 8.4 64 18-83 38-108 (210)
33 2yy0_A C-MYC-binding protein; 60.1 18 0.00061 20.9 4.3 23 21-43 29-51 (53)
34 4etp_A Kinesin-like protein KA 59.5 51 0.0017 26.1 8.4 52 21-85 6-57 (403)
35 1jnm_A Proto-oncogene C-JUN; B 59.1 18 0.00061 21.1 4.3 27 20-46 24-50 (62)
36 1nkp_B MAX protein, MYC proto- 59.1 20 0.00068 21.9 4.8 20 25-44 61-80 (83)
37 3gwk_C SAG1039, putative uncha 58.9 25 0.00087 21.4 5.3 73 18-92 8-80 (98)
38 2wt7_A Proto-oncogene protein 58.8 18 0.00061 21.2 4.3 26 20-45 25-50 (63)
39 1t2k_D Cyclic-AMP-dependent tr 58.7 18 0.00062 21.0 4.3 36 4-41 24-59 (61)
40 3fav_A ESAT-6-like protein ESX 58.4 30 0.001 21.3 5.6 60 24-92 20-79 (101)
41 2ic6_A Nucleocapsid protein; h 58.3 25 0.00086 22.0 5.1 21 1-21 4-24 (78)
42 2wt7_B Transcription factor MA 57.5 18 0.00063 23.2 4.5 39 4-44 50-88 (90)
43 1go4_E MAD1 (mitotic arrest de 57.1 8.4 0.00029 25.3 2.8 27 22-48 72-98 (100)
44 2wt7_A Proto-oncogene protein 55.9 28 0.00097 20.3 5.6 36 4-41 25-60 (63)
45 3fav_B ESAT-6, 6 kDa early sec 55.7 31 0.0011 20.8 5.6 60 21-89 15-74 (94)
46 2ic9_A Nucleocapsid protein; h 55.2 31 0.001 22.5 5.3 11 99-109 83-93 (96)
47 2jee_A YIIU; FTSZ, septum, coi 55.0 27 0.00094 22.0 4.9 28 20-47 22-49 (81)
48 2k48_A Nucleoprotein; viral pr 54.7 18 0.00063 23.9 4.2 20 2-21 35-54 (107)
49 3h6p_C ESAT-6-like protein ESX 51.5 29 0.00098 21.2 4.7 63 21-92 16-78 (96)
50 3uun_A Dystrophin; triple heli 51.5 39 0.0013 20.7 8.7 79 5-85 19-114 (119)
51 3m9b_A Proteasome-associated A 50.7 40 0.0014 25.5 6.0 40 5-46 57-96 (251)
52 1hjb_A Ccaat/enhancer binding 50.5 26 0.0009 22.2 4.3 24 21-44 39-62 (87)
53 3r6n_A Desmoplakin; spectrin r 50.5 82 0.0028 25.3 8.3 64 19-86 36-99 (450)
54 2vs0_A Virulence factor ESXA; 50.0 39 0.0013 20.2 5.3 59 24-91 19-77 (97)
55 1kd8_B GABH BLL, GCN4 acid bas 50.0 29 0.00098 18.6 4.2 26 21-46 4-29 (36)
56 2ic9_A Nucleocapsid protein; h 49.6 51 0.0017 21.4 6.6 20 1-20 4-23 (96)
57 3m48_A General control protein 49.5 28 0.00095 18.3 4.0 26 21-46 3-28 (33)
58 2oxj_A Hybrid alpha/beta pepti 49.3 28 0.00097 18.4 4.2 26 21-46 4-29 (34)
59 2lw1_A ABC transporter ATP-bin 47.7 31 0.0011 21.4 4.3 24 23-46 20-43 (89)
60 3t98_B Nucleoporin NUP58/NUP45 47.1 53 0.0018 20.9 7.8 36 21-57 15-50 (93)
61 2l5g_A GPS2 protein, G protein 47.0 22 0.00074 19.3 2.9 23 17-39 7-29 (38)
62 3oeo_A Spheroplast protein Y; 46.5 10 0.00034 25.8 2.0 68 7-76 60-130 (138)
63 1gu4_A CAAT/enhancer binding p 46.5 34 0.0012 21.2 4.3 26 20-45 38-63 (78)
64 3lay_A Zinc resistance-associa 45.9 32 0.0011 24.5 4.6 57 23-82 83-140 (175)
65 3fb2_A Spectrin alpha chain, b 45.6 26 0.00089 24.4 4.2 62 20-83 48-119 (218)
66 4g1a_A AQ-C16C19 peptide; heli 45.1 15 0.00051 18.8 2.0 25 22-46 4-28 (32)
67 3ljm_A Coil Ser L9C; de novo d 44.4 31 0.0011 17.5 4.3 21 25-45 8-28 (31)
68 2er8_A Regulatory protein Leu3 43.8 19 0.00065 20.9 2.7 23 24-46 48-70 (72)
69 3k66_A Beta-amyloid-like prote 43.3 1E+02 0.0035 23.1 9.0 39 60-98 86-127 (239)
70 1kd8_A GABH AIV, GCN4 acid bas 42.8 39 0.0013 18.1 4.2 26 21-46 4-29 (36)
71 2jt1_A PEFI protein; solution 42.7 16 0.00055 22.4 2.3 26 79-104 6-37 (77)
72 2wuj_A Septum site-determining 42.6 33 0.0011 19.8 3.6 25 21-45 30-54 (57)
73 3pxg_A Negative regulator of g 41.9 19 0.00065 28.6 3.2 37 27-65 422-466 (468)
74 3v86_A De novo design helix; c 41.6 33 0.0011 16.9 3.8 23 22-44 4-26 (27)
75 3o3m_B Beta subunit 2-hydroxya 41.3 82 0.0028 24.4 6.8 46 25-74 131-176 (385)
76 2wg5_A General control protein 41.2 35 0.0012 22.1 4.0 26 21-46 10-35 (109)
77 2wq1_A General control protein 40.8 40 0.0014 17.7 4.2 26 21-46 3-28 (33)
78 3c3g_A Alpha/beta peptide with 40.8 40 0.0014 17.7 4.2 26 21-46 3-28 (33)
79 1uii_A Geminin; human, DNA rep 40.4 48 0.0017 21.0 4.3 27 20-46 48-74 (83)
80 3o3m_A Alpha subunit 2-hydroxy 40.4 87 0.003 24.4 6.8 44 27-74 153-196 (408)
81 3mq7_A Bone marrow stromal ant 40.1 64 0.0022 21.7 5.1 17 27-43 73-89 (121)
82 1zme_C Proline utilization tra 39.8 38 0.0013 19.3 3.6 21 26-46 45-65 (70)
83 1nkp_A C-MYC, MYC proto-oncoge 39.6 45 0.0015 20.8 4.2 21 25-45 66-86 (88)
84 2ve7_A Kinetochore protein HEC 39.1 1.2E+02 0.0041 23.1 7.3 39 7-45 172-212 (315)
85 3hnw_A Uncharacterized protein 39.0 49 0.0017 22.5 4.5 8 31-38 116-123 (138)
86 1gk4_A Vimentin; intermediate 38.9 67 0.0023 19.7 5.0 44 3-46 2-47 (84)
87 1a93_B MAX protein, coiled coi 38.6 45 0.0015 17.6 4.0 23 22-44 11-33 (34)
88 3a2a_A Voltage-gated hydrogen 38.3 61 0.0021 19.0 4.3 26 20-45 20-45 (58)
89 1t3j_A Mitofusin 1; coiled coi 37.9 40 0.0014 21.9 3.7 23 19-41 48-70 (96)
90 1hwt_C Protein (heme activator 37.4 13 0.00045 22.1 1.3 23 25-47 58-80 (81)
91 2lf0_A Uncharacterized protein 37.3 17 0.0006 24.6 2.0 19 27-45 38-56 (123)
92 3i00_A HIP-I, huntingtin-inter 36.8 92 0.0031 20.7 5.9 31 4-34 24-56 (120)
93 2pms_C Pneumococcal surface pr 36.7 97 0.0033 21.0 8.2 53 21-76 64-116 (125)
94 4etp_A Kinesin-like protein KA 36.7 45 0.0015 26.4 4.6 38 3-42 4-41 (403)
95 1x8y_A Lamin A/C; structural p 36.4 19 0.00065 22.5 2.0 44 3-46 4-49 (86)
96 4h22_A Leucine-rich repeat fli 36.1 91 0.0031 20.4 7.4 62 15-86 13-74 (103)
97 3v2d_2 50S ribosomal protein L 35.5 74 0.0025 19.2 5.9 53 18-76 16-68 (72)
98 1s1c_X RHO-associated, coiled- 35.5 54 0.0018 20.1 3.9 48 22-71 3-50 (71)
99 2akf_A Coronin-1A; coiled coil 35.3 48 0.0016 17.0 3.7 22 24-45 5-26 (32)
100 2oto_A M protein; helical coil 35.3 64 0.0022 21.9 4.7 41 5-45 32-77 (155)
101 3azd_A Short alpha-tropomyosin 35.1 19 0.00065 19.2 1.5 29 18-46 4-32 (37)
102 1rtm_1 Mannose-binding protein 34.6 46 0.0016 21.6 3.8 23 23-45 2-24 (149)
103 3na7_A HP0958; flagellar bioge 34.5 1.3E+02 0.0045 21.8 7.6 79 4-88 34-118 (256)
104 1gk7_A Vimentin; intermediate 34.2 57 0.0019 17.5 3.5 32 10-43 7-38 (39)
105 1s35_A Beta-I spectrin, spectr 33.8 74 0.0025 21.6 5.0 60 21-82 36-106 (214)
106 1go4_E MAD1 (mitotic arrest de 33.6 59 0.002 21.2 4.1 24 21-44 15-38 (100)
107 3nr7_A DNA-binding protein H-N 33.5 89 0.0031 19.6 6.2 47 11-57 17-79 (86)
108 1nlw_A MAD protein, MAX dimeri 33.2 52 0.0018 20.2 3.6 23 23-45 45-67 (80)
109 3nmd_A CGMP dependent protein 33.1 85 0.0029 19.2 4.7 19 27-45 42-60 (72)
110 3swy_A Cyclic nucleotide-gated 32.9 67 0.0023 18.0 3.9 23 22-44 2-24 (46)
111 1ses_A Seryl-tRNA synthetase; 32.8 1.1E+02 0.0037 24.3 6.3 41 4-44 44-90 (421)
112 3qrx_B Melittin; calcium-bindi 32.8 16 0.00054 18.1 0.9 8 70-77 17-24 (26)
113 2p32_A Heat shock 70 kDa prote 32.5 90 0.0031 20.0 4.9 20 52-73 69-88 (120)
114 1vq8_V 50S ribosomal protein L 32.2 84 0.0029 18.9 7.2 54 18-76 12-65 (71)
115 3c3f_A Alpha/beta peptide with 32.2 59 0.002 17.1 4.2 26 21-46 4-29 (34)
116 1lwu_C Fibrinogen gamma chain; 32.1 45 0.0015 25.9 3.8 27 20-46 28-54 (323)
117 2iw5_B Protein corest, REST co 32.0 1E+02 0.0034 23.1 5.6 63 11-75 74-158 (235)
118 2yxy_A Hypothetical conserved 31.6 60 0.002 21.7 3.9 22 16-37 12-33 (115)
119 4e61_A Protein BIM1; EB1-like 31.6 1.1E+02 0.0038 20.1 8.2 56 24-89 10-65 (106)
120 3tso_C RAB11 family-interactin 31.5 94 0.0032 19.2 4.6 32 13-44 9-40 (75)
121 3uul_A Utrophin; spectrin repe 31.5 90 0.0031 19.0 8.4 62 24-85 42-114 (118)
122 1uo4_A General control protein 31.3 62 0.0021 17.1 4.2 26 21-46 4-29 (34)
123 1zhc_A Hypothetical protein HP 31.2 90 0.0031 18.9 5.1 37 5-44 27-63 (76)
124 3lof_A Heat shock 70 kDa prote 31.0 1E+02 0.0034 19.4 4.9 12 30-41 42-53 (113)
125 3m6c_A 60 kDa chaperonin 1; ch 30.9 77 0.0026 23.0 4.7 30 20-49 154-192 (194)
126 2kii_A Putative uncharacterize 30.5 39 0.0014 23.5 3.0 26 79-104 47-72 (181)
127 1jcd_A Major outer membrane li 30.4 80 0.0027 18.1 4.3 24 22-45 8-31 (52)
128 3m9b_A Proteasome-associated A 29.9 30 0.001 26.2 2.4 23 22-44 58-80 (251)
129 2huj_A LIN2004 protein; hypoth 29.8 1.4E+02 0.0046 20.5 6.4 52 21-74 20-79 (140)
130 4dnd_A Syntaxin-10, SYN10; str 29.6 1.3E+02 0.0043 20.1 9.0 31 16-46 58-88 (130)
131 2hv8_D RAB11 family-interactin 28.8 97 0.0033 18.5 4.7 35 10-44 15-49 (64)
132 1sf9_A YFHH hypothetical prote 28.7 64 0.0022 21.9 3.7 23 15-37 29-51 (128)
133 4ioe_A Secreted protein ESXB; 28.1 96 0.0033 18.3 6.9 29 18-46 9-37 (93)
134 1wlq_A Geminin; coiled-coil; 2 27.9 97 0.0033 19.5 4.2 27 20-46 40-66 (83)
135 2eqb_B RAB guanine nucleotide 27.9 1.2E+02 0.0043 19.5 5.6 62 7-70 24-90 (97)
136 2hy6_A General control protein 27.7 73 0.0025 16.8 4.2 26 21-46 4-29 (34)
137 3few_X Colicin S4; cell lysis, 27.6 28 0.00095 28.5 2.0 22 86-107 255-277 (505)
138 2nrj_A HBL B protein; enteroto 26.7 2.2E+02 0.0075 21.9 11.7 84 3-88 227-336 (346)
139 3twe_A Alpha4H; unknown functi 26.2 66 0.0023 15.7 2.9 17 29-45 5-21 (27)
140 3q8t_A Beclin-1; autophagy, AT 26.0 1.3E+02 0.0044 19.0 9.9 69 2-82 4-72 (96)
141 3trt_A Vimentin; cytoskeleton, 25.9 91 0.0031 18.4 3.8 23 23-45 54-76 (77)
142 3kqg_A Langerin, C-type lectin 25.6 66 0.0023 21.5 3.4 17 28-44 19-35 (182)
143 1yz7_A Probable translation in 25.5 76 0.0026 22.7 3.8 38 69-107 7-44 (188)
144 1x9f_B Erythrocruorin, globin 25.4 80 0.0027 20.6 3.7 43 50-94 3-45 (145)
145 3efg_A Protein SLYX homolog; x 25.0 95 0.0033 19.0 3.8 27 19-45 29-55 (78)
146 1xaw_A Occludin; coiled-coil, 24.5 1.7E+02 0.0059 20.0 8.5 54 22-82 63-121 (140)
147 3sj5_A Methyl-accepting chemot 24.2 47 0.0016 23.3 2.5 24 80-103 49-72 (188)
148 2bni_A General control protein 24.1 88 0.003 16.5 4.2 26 21-46 4-29 (34)
149 1cmb_A Met APO-repressor; DNA- 24.0 29 0.001 22.5 1.2 20 88-107 82-101 (104)
150 4i0x_B ESAT-6-like protein MAB 23.9 1.3E+02 0.0045 18.4 8.2 28 19-46 12-39 (103)
151 3osx_A 60 kDa chaperonin; alph 23.6 1.4E+02 0.0047 21.8 4.9 29 20-48 161-198 (201)
152 2dq0_A Seryl-tRNA synthetase; 23.3 1.2E+02 0.0041 24.4 5.0 23 21-43 72-94 (455)
153 2z5i_A TM, general control pro 23.3 1.1E+02 0.0038 17.3 4.1 24 21-44 8-31 (52)
154 2hfi_A Hypothetical protein YP 23.2 1.8E+02 0.0061 19.6 6.1 52 21-74 4-63 (131)
155 1zxa_A CGMP-dependent protein 23.1 1.3E+02 0.0045 18.1 4.1 25 22-46 29-53 (67)
156 1fzc_C Fibrin; blood coagulati 22.8 30 0.001 26.9 1.3 25 21-45 21-45 (319)
157 3u06_A Protein claret segregat 22.6 1.3E+02 0.0046 23.8 5.1 39 3-43 4-42 (412)
158 2efr_A General control protein 22.5 2E+02 0.0068 19.9 6.9 41 4-44 44-89 (155)
159 2xus_A Breast cancer metastasi 22.4 81 0.0028 17.9 2.8 15 33-47 33-47 (49)
160 3j21_W 50S ribosomal protein L 22.4 1.3E+02 0.0046 18.0 8.0 55 18-77 9-63 (72)
161 3vmx_A Voltage-gated hydrogen 22.4 1.2E+02 0.004 17.2 4.3 26 20-45 13-38 (48)
162 1hjb_A Ccaat/enhancer binding 22.3 1.5E+02 0.0052 18.5 4.8 24 21-44 53-76 (87)
163 1hlo_A Protein (transcription 22.2 98 0.0034 18.6 3.4 26 21-46 53-78 (80)
164 4a17_U RPL35, 60S ribosomal pr 22.2 1.8E+02 0.0063 19.4 6.7 54 18-76 13-66 (124)
165 1am9_A Srebp-1A, protein (ster 22.2 1.4E+02 0.0048 18.1 4.3 24 22-45 47-70 (82)
166 4emc_A Monopolin complex subun 22.1 1.4E+02 0.0047 21.6 4.6 34 4-46 22-55 (190)
167 3ni0_A Bone marrow stromal ant 21.9 97 0.0033 20.1 3.4 33 13-45 50-87 (99)
168 3mq7_A Bone marrow stromal ant 21.7 1.4E+02 0.0049 20.0 4.3 25 21-45 74-98 (121)
169 4dzo_A Mitotic spindle assembl 21.7 94 0.0032 20.7 3.5 22 65-86 20-41 (123)
170 3h43_A Proteasome-activating n 21.5 57 0.0019 20.2 2.2 18 1-18 1-18 (85)
171 2wl8_A Peroxisomal biogenesis 21.5 1.2E+02 0.0042 20.3 4.1 31 34-66 35-66 (126)
172 2xdj_A Uncharacterized protein 21.4 1.3E+02 0.0044 18.7 3.9 27 19-45 21-47 (83)
173 2ocy_A RAB guanine nucleotide 21.3 2.1E+02 0.0073 19.8 7.2 52 31-82 78-134 (154)
174 3m91_A Proteasome-associated A 21.2 1.2E+02 0.0043 17.1 5.7 9 33-41 38-46 (51)
175 3kin_B Kinesin heavy chain; mo 21.2 1.6E+02 0.0055 19.1 4.5 30 16-45 80-109 (117)
176 1x9f_D Globin C, hemoglobin ch 21.2 1.1E+02 0.0037 19.8 3.7 42 51-94 2-43 (140)
177 3kdq_A Uncharacterized conserv 21.1 2.1E+02 0.0071 19.7 5.9 29 16-44 2-30 (154)
178 3a7p_A Autophagy protein 16; c 21.0 1.3E+02 0.0046 20.9 4.2 25 21-45 64-88 (152)
179 1yhu_D Hemoglobin B2 chain; gl 20.9 62 0.0021 21.3 2.5 44 49-94 2-47 (149)
180 2htj_A P fimbrial regulatory p 20.5 89 0.003 18.2 2.9 25 81-105 4-28 (81)
181 2kjg_A Archaeal protein SSO690 20.4 48 0.0016 21.4 1.7 66 9-92 10-75 (99)
182 2iak_A Bullous pemphigoid anti 20.4 1.3E+02 0.0043 21.0 4.2 59 20-80 55-120 (224)
183 1mba_A Myoglobin; oxygen stora 20.3 1.4E+02 0.0047 19.3 4.1 40 50-94 2-41 (147)
184 2a26_A Calcyclin-binding prote 20.2 86 0.0029 17.7 2.6 13 30-42 32-44 (50)
No 1
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=97.96 E-value=0.00014 Score=47.40 Aligned_cols=84 Identities=13% Similarity=0.232 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHH
Q psy8735 19 TEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYPKSKKILL 98 (115)
Q Consensus 19 t~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E~~p~~kk~L~ 98 (115)
..+.+...|+.|+.+...++..+.++++.-...+|+ .+.+.|-.....|..=|-++.-+++.|++.=+-+-++++
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~-----~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rgv~~~~v~ 76 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAK-----QTVQKHIDLLHTYNEIRDIALGMIGKVAEHEKCTSVELF 76 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 456788889999999999999999987644433332 566889999999999999999999999999888889999
Q ss_pred HHhcccccc
Q psy8735 99 EEVGIETDE 107 (115)
Q Consensus 99 EelGiEtDe 107 (115)
+++|++.++
T Consensus 77 ~e~g~~~~D 85 (85)
T 3viq_B 77 DRFGVNGSE 85 (85)
T ss_dssp HHHTCCTTC
T ss_pred HHhCCCCCC
Confidence 999999763
No 2
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=93.85 E-value=0.2 Score=33.78 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=38.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHh---hhcCCCCChhhhcHHhHHHHHHH
Q psy8735 16 QQMTEAEAKQKKAELQAELEEKKSKLEKL---SRNVNVISEGEVDKKTITDTKEK 67 (115)
Q Consensus 16 s~lt~~el~~~i~~L~~e~~~l~~rL~~l---~~~~~~Vs~ee~~~~~v~~~~~k 67 (115)
..+|-+||.+++.+|+-||+.|..+|..- ......+||.+++ -+...|..
T Consensus 6 ~~~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKe--a~I~s~~~ 58 (110)
T 2oa5_A 6 PDKTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRE--SIIVSSSR 58 (110)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHH--HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHH--HHHHHHHH
Confidence 47899999999999999999999999641 1244788999999 77777643
No 3
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=88.46 E-value=3.5 Score=26.51 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=59.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--ChhhhcHHhHHHHHHHHHHHHHH-HHHHHHHHH
Q psy8735 7 VKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVI--SEGEVDKKTITDTKEKMVKEYNK-RKRMCTEML 83 (115)
Q Consensus 7 l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~V--s~ee~~~~~v~~~~~k~~~~w~k-RKRi~~di~ 83 (115)
+..-+..+. .++-++-+..|.+.+..+.+..+=|..+.-....+ ++..+. .+....+.|++.|.+ =|+=++.+.
T Consensus 17 i~~~l~~~~-~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~--~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 17 AKASLAEAP-SQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERA--TYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHGG-GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444443 45678899999999999999999999997544455 788899 999999999999999 888888776
Q ss_pred H
Q psy8735 84 E 84 (115)
Q Consensus 84 d 84 (115)
|
T Consensus 94 d 94 (97)
T 3onj_A 94 D 94 (97)
T ss_dssp H
T ss_pred h
Confidence 5
No 4
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=84.36 E-value=4.9 Score=26.24 Aligned_cols=66 Identities=11% Similarity=0.165 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHH
Q psy8735 4 KEKVKSKLKQLSQQMTEAEAKQKKA-ELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKR 77 (115)
Q Consensus 4 ~~~l~seL~~L~s~lt~~el~~~i~-~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKR 77 (115)
|+.+......|.+.--+.+|+..|. +|...|..|..++..|-+. | .+. ++-..|....+.+-+=.|
T Consensus 19 iq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~~l~~l-----~-qke--RL~~dF~~l~~~fQ~~qr 85 (97)
T 1hs7_A 19 SRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIESNILI-----H-QNG--KLSADFKNLKTKYQSLQQ 85 (97)
T ss_dssp HHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHHHSTHH-----H-HCH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccc-----c-hhh--HHHHHHHHHHHHHHHHHH
Confidence 5677888888999999999999999 9999999999999965442 1 233 555555555544433333
No 5
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=84.08 E-value=6.6 Score=25.44 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=53.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHH
Q psy8735 6 KVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKR 77 (115)
Q Consensus 6 ~l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKR 77 (115)
.+...+..+.+....++-+..|.+.+..+.+..+=|..+.-....+++..+. .+....+.|++.+.+=|+
T Consensus 30 ~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~--~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 30 DLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRN--PMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp HHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 3444445554443448888999999999999999999987555566889999 999999999998876554
No 6
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=83.03 E-value=4.3 Score=27.51 Aligned_cols=78 Identities=10% Similarity=0.229 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---ChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------
Q psy8735 22 EAKQKKAELQAELEEKKSKLEKLSRNVNVI---SEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYP------- 91 (115)
Q Consensus 22 el~~~i~~L~~e~~~l~~rL~~l~~~~~~V---s~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E~~p------- 91 (115)
+|......|+.++.+++.+|..|+.....- ..+++. .+...|...... ++.++|+.+.+-..
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~--~LI~KWr~asq~------aaeeLf~~~~~rv~rMGG~~~ 75 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQ--TLIQKWKNAAQQ------AAEVLFKPMAERIRLAGGVTQ 75 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHH------HHHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH--HHHHHHHHHHHH------HHHHHHHHHHHHHHhcccchh
Confidence 567778889999999999999886422221 234455 555555444432 35567766654321
Q ss_pred -------------------CcHHHHHHHhcccccc
Q psy8735 92 -------------------KSKKILLEEVGIETDE 107 (115)
Q Consensus 92 -------------------~~kk~L~EelGiEtDe 107 (115)
-+-..++..+||+.+-
T Consensus 76 ~~~~~~~~~~~~~~~e~e~fTm~~mLk~L~Id~~l 110 (122)
T 3viq_A 76 SFRIEEGENKGQIQEVRTEFTMSMFLNQFGVPVHL 110 (122)
T ss_dssp EEECCSSTTTTCEEEEEECCCHHHHHHHTTCCTTT
T ss_pred hhhhhccccccccccccccccHHHHHHHcCCCHHH
Confidence 1567888888888775
No 7
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=81.13 E-value=4.9 Score=25.06 Aligned_cols=58 Identities=10% Similarity=0.022 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy8735 25 QKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYP 91 (115)
Q Consensus 25 ~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E~~p 91 (115)
....+++..+..|...+.+|.++= .- ..-..|......|...=+-+.+.++.|.+.+.
T Consensus 14 ~~~~~i~~~l~~l~~~v~~l~~~W-------~G--~Aa~af~~~~~~w~~~a~~l~~~L~~i~~~l~ 71 (94)
T 4i0x_A 14 SLADQMRAGSNSLDRDVQSLFGVW-------KG--SAADAYRSGWDEMQDGATKVWNALTDIASTLG 71 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTC-------CS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc-------ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666665311 22 66778999999999998888888888876654
No 8
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=80.64 E-value=11 Score=25.38 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=38.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHH
Q psy8735 16 QQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYPKSKK 95 (115)
Q Consensus 16 s~lt~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E~~p~~kk 95 (115)
.+++..+|..+|...+.+......||..... ...++|.+.++..+...-......=-|=.-+-+-|-+++.-+-+. .
T Consensus 20 ~~~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~-~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k~~--~ 96 (113)
T 4fi5_A 20 GSMTMEELQREINAHEGQLVIARQKVRDAEK-QYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIATGKNL--G 96 (113)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--c
Confidence 4678889999999999888888888877543 345667666622222222111111111111222334444422222 2
Q ss_pred HHHHHhccccccCC
Q psy8735 96 ILLEEVGIETDEMV 109 (115)
Q Consensus 96 ~L~EelGiEtDe~v 109 (115)
...+=-|+|.|++.
T Consensus 97 k~~DPTG~EpDDHL 110 (113)
T 4fi5_A 97 KEQDPTGVEPGDHL 110 (113)
T ss_dssp --------------
T ss_pred CCCCCCCCCCcccc
Confidence 22666799988754
No 9
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=80.46 E-value=6.1 Score=29.14 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCChhhhc
Q psy8735 4 KEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSR-NVNVISEGEVD 57 (115)
Q Consensus 4 ~~~l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~l~~-~~~~Vs~ee~~ 57 (115)
.++|++++.+..|. -.++...+.+|.+++..+.++|.+|++ .+..+|.+-..
T Consensus 32 ~~~~~a~~~s~~s~--~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~~ 84 (206)
T 3oa7_A 32 LQQLRVNYGSFVSE--YNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNIL 84 (206)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHHh
Confidence 46788888777765 478999999999999999999999997 55788887766
No 10
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=77.99 E-value=7 Score=21.79 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 5 EKVKSKLKQLSQQ-MTEAEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 5 ~~l~seL~~L~s~-lt~~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
-.+.+||..|... .+.+++ +.|+.+.+.++.+|..|++
T Consensus 3 aalkselqalkkegfspeel----aaleselqalekklaalks 41 (48)
T 1g6u_A 3 AALKSELQALKKEGFSPEEL----AALESELQALEKKLAALKS 41 (48)
T ss_dssp HHHHHHHHHHHHTTCSHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3577888877654 444443 4455555555555555543
No 11
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=77.84 E-value=11 Score=26.51 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=19.9
Q ss_pred hhcHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 55 EVDKKTITDTKEKMVKEYNKRKRMCTEML 83 (115)
Q Consensus 55 e~~~~~v~~~~~k~~~~w~kRKRi~~di~ 83 (115)
... ++.+++...+..|-.||----+-.
T Consensus 118 kl~--kLq~EN~~LV~RWM~rk~qEAe~M 144 (152)
T 3a7p_A 118 KLS--DLKKEHSQLVARWLKKTEKETEAM 144 (152)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355 888999999999999876444333
No 12
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=76.49 E-value=13 Score=24.00 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=57.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 7 VKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEML 83 (115)
Q Consensus 7 l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~ 83 (115)
+..-+..+. .++-++-+..|.+.+..+.+..+=|..+.-....++|..+. .+....+.|++.+.+=|+=++.+-
T Consensus 21 i~~kl~~i~-~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~--~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 21 ITSKIARVP-RLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRG--MYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHGG-GSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHH--HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHhh-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443 33557888899999999999999999987555666888899 999999999999988877776644
No 13
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=76.47 E-value=8.7 Score=23.82 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
..++...+.+...++..|+..|.++++
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 667777778888888888888888876
No 14
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=76.20 E-value=6.2 Score=20.40 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 22 EAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 22 el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
-++.+|+.|++++..+.=.+..|+.
T Consensus 6 alkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455666666666666666666554
No 15
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=75.49 E-value=3.2 Score=24.16 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 23 AKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 23 l~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
|+.+...|+.++..|..+++.|+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 16
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=73.62 E-value=5.5 Score=27.34 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 4 KEKVKSKLKQLSQQMT--EAEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 4 ~~~l~seL~~L~s~lt--~~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
+......|..+.+.+. .+++...|..|..++.+++.++..|+
T Consensus 9 ~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~ 52 (171)
T 2zvf_A 9 VEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLK 52 (171)
T ss_dssp HHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666665 24888888888888888888887775
No 17
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=73.10 E-value=5.8 Score=24.33 Aligned_cols=39 Identities=10% Similarity=0.262 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 4 KEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 4 ~~~l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~l 44 (115)
|+.|+..+..|... ...+..+...|..++..|...|..|
T Consensus 31 i~~LE~~v~~le~~--~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 31 LKALETQVVTLKEL--HSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56666666666542 2334555555555555555555543
No 18
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=72.25 E-value=6.8 Score=23.35 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
..+|..++..|+.++..|...+..|+.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888889999999998888875
No 19
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=71.52 E-value=5.2 Score=25.41 Aligned_cols=46 Identities=17% Similarity=0.410 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCC
Q psy8735 4 KEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSR-NVNVI 51 (115)
Q Consensus 4 ~~~l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~l~~-~~~~V 51 (115)
.+..++.+-.+.|.+ .+.......|..++..++.++..|+. |+..|
T Consensus 33 Ls~vr~~ni~~eskL--~eae~rn~eL~~e~~~l~~~~eelq~~~~~~~ 79 (81)
T 1wt6_A 33 MEAIRTDNQNFASQL--REAEARNRDLEAHVRQLQERMELLQAEGATAV 79 (81)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccchhhc
Confidence 334444444444433 24455666777777777777777764 43443
No 20
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=71.24 E-value=8 Score=22.40 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.++|...+..|+.++..|...+..|+.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888899999999999999998874
No 21
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=70.32 E-value=2.9 Score=26.35 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8735 21 AEAKQKKAELQAELEEKKSKLE 42 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~ 42 (115)
+.|...|..|+.++..++..|.
T Consensus 25 e~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555554
No 22
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=68.73 E-value=5.8 Score=22.16 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 18 MTEAEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 18 lt~~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
+|-++|..+|.....+|...++++..|+
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777776666666664
No 23
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=68.52 E-value=15 Score=21.36 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
+.+|...+..|+.++..|...+..|+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554
No 24
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=68.09 E-value=7 Score=19.95 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 22 EAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 22 el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
++..-.+.|+++++++..+++.|-
T Consensus 3 qlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888888888887763
No 25
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=65.48 E-value=4.7 Score=22.32 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhh
Q psy8735 32 AELEEKKSKLEKLSR 46 (115)
Q Consensus 32 ~e~~~l~~rL~~l~~ 46 (115)
..+.+|++||..||+
T Consensus 26 edi~~MqsRLaALRS 40 (40)
T 2xze_Q 26 EALEAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 568899999999985
No 26
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=64.27 E-value=20 Score=21.17 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
..++...+..|+.++..|..++..|+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666654
No 27
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=63.92 E-value=15 Score=20.49 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 22 EAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 22 el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
+|......|+..+.+|++|+..|.
T Consensus 7 eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666554
No 28
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=63.35 E-value=22 Score=22.26 Aligned_cols=62 Identities=19% Similarity=0.182 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILEN 89 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E~ 89 (115)
.++......++..+..|...+.+|.+++ .- .- ..-..|......|..-=+-..+++..|...
T Consensus 21 ~~~~~~~~~i~~~l~~L~~~v~~L~~~g-~W----~G--~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~ 82 (103)
T 4i0x_B 21 SRARGFKEFVTENLDQLESRAQKLVQSG-QW----AG--AAAAAYSQAHKEWMDAARELVEGLSQMEEA 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SS----CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-Ce----ec--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777776541 01 11 455678888888888877777777776543
No 29
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=62.66 E-value=23 Score=21.37 Aligned_cols=73 Identities=8% Similarity=0.059 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Q psy8735 18 MTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYPK 92 (115)
Q Consensus 18 lt~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E~~p~ 92 (115)
++.++|......+......++..|..|.+....+...=.- .....|......|..-=+-+.+.++.|...+..
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G--~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 81 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEG--ASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHN 81 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665555555555554322111111112 344566666677777767777777777655543
No 30
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=62.53 E-value=14 Score=21.82 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 4 KEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKL 41 (115)
Q Consensus 4 ~~~l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL 41 (115)
++.++.+...|... +.+|...|..|+.++..|..-|
T Consensus 25 ~~~le~~~~~L~~~--N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKK--NEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665554 5566666666666666665443
No 31
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=62.45 E-value=15 Score=20.45 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.++...-..|++.+..|+.||+.|..
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34555667777788888888877754
No 32
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=60.73 E-value=40 Score=23.60 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhh-------hcHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 18 MTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGE-------VDKKTITDTKEKMVKEYNKRKRMCTEML 83 (115)
Q Consensus 18 lt~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee-------~~~~~v~~~~~k~~~~w~kRKRi~~di~ 83 (115)
++...+..+-..++.++.....++..|...+..++|+. .. .+...|.........|++-...+.
T Consensus 38 ~~ve~llkkH~~le~ei~~~~~~v~~l~~~a~~l~~~~~~~i~~rl~--~l~~~~~~L~~~a~~R~~~L~~L~ 108 (210)
T 3pdy_A 38 PSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPATRGAYRDCLG--RLDLQYAKLLNSSKARLRSLESLH 108 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667778888999999999999987666667664 35 677888888888888877655443
No 33
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=60.13 E-value=18 Score=20.85 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEK 43 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~ 43 (115)
++|+.++..|..+++++.++|..
T Consensus 29 ~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566677777777777776653
No 34
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=59.49 E-value=51 Score=26.07 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEA 85 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~ 85 (115)
+++..++..|+.++.+++..+..+.. .+..-...+..+=..||++++++.+.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~-------------~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTEL-------------GMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555566666666666666665542 22223344555667899998888764
No 35
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=59.10 E-value=18 Score=21.13 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
..+|...+..|+.++..|...+..|+.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777753
No 36
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=59.06 E-value=20 Score=21.93 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8735 25 QKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 25 ~~i~~L~~e~~~l~~rL~~l 44 (115)
.++..|..++..|+.+|..|
T Consensus 61 ~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 61 QDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443
No 37
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=58.92 E-value=25 Score=21.36 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Q psy8735 18 MTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYPK 92 (115)
Q Consensus 18 lt~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E~~p~ 92 (115)
+|.++|+..-..+......+...|..|.+....+...=.- .....|......|+..=.-+.++++.|...+..
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G--~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~ 80 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDG--STFDSFEAQFNELSPKITEFAQLLEDINQQLLK 80 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCS--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655555555555555554311111110011 222345555556766666677777777655443
No 38
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=58.82 E-value=18 Score=21.25 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
+.+|...+..|+.++..|...+..|+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666554
No 39
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=58.72 E-value=18 Score=20.96 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 4 KEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKL 41 (115)
Q Consensus 4 ~~~l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL 41 (115)
++.|+.+...|.+. +.+|..+|..|+.++..|...|
T Consensus 24 ~~~Le~~~~~L~~~--n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSL--NGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 45556665555553 4556666666666666665543
No 40
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=58.39 E-value=30 Score=21.32 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Q psy8735 24 KQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYPK 92 (115)
Q Consensus 24 ~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E~~p~ 92 (115)
.....+++..+..|...+.+|.++= .- ..-..|......|...=+-+.++++.|.+.+..
T Consensus 20 ~~~~~~l~~~l~~l~~~~~~L~~~W-------~G--~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~ 79 (101)
T 3fav_A 20 ERISGDLKTQIDQVESTAGSLQGQW-------RG--AAGTAAQAAVVRFQEAANKQKQELDEISTNIRQ 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCC-------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC-------ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554311 11 445678888888888888888888877665543
No 41
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=58.32 E-value=25 Score=22.03 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=12.4
Q ss_pred CchHHHHHHHHHHHHccCCHH
Q psy8735 1 MDDKEKVKSKLKQLSQQMTEA 21 (115)
Q Consensus 1 ~~~~~~l~seL~~L~s~lt~~ 21 (115)
|.+|++|..|+....++|+++
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A 24 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTT 24 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666665554
No 42
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=57.48 E-value=18 Score=23.18 Aligned_cols=39 Identities=36% Similarity=0.364 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 4 KEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 4 ~~~l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~l 44 (115)
+..|+.+...|.+. .+.|..+...+..+...+..+++.|
T Consensus 50 ~~~LE~e~~~L~~e--~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 50 KHHLENEKTQLIQQ--VEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445444444332 2344444444444455555444444
No 43
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=57.07 E-value=8.4 Score=25.31 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy8735 22 EAKQKKAELQAELEEKKSKLEKLSRNV 48 (115)
Q Consensus 22 el~~~i~~L~~e~~~l~~rL~~l~~~~ 48 (115)
+.+..+.+|+++|..|..++..|..|+
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lEeg~ 98 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAMERGG 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 567889999999999999999887644
No 44
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=55.88 E-value=28 Score=20.34 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 4 KEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKL 41 (115)
Q Consensus 4 ~~~l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL 41 (115)
+..|+.+...|.+. +..|...|..|+.++..|..-|
T Consensus 25 ~~~Le~~v~~L~~~--n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDE--KSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666555543 4556666666666666665544
No 45
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=55.74 E-value=31 Score=20.76 Aligned_cols=60 Identities=12% Similarity=0.195 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILEN 89 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E~ 89 (115)
.++......++..+..|...+.+|.++=.. ..-..|......|..-=.-..++++.|...
T Consensus 15 ~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G---------~A~~af~~~~~~w~~~~~~~~~~L~~i~~~ 74 (94)
T 3fav_B 15 SAIQGNVTSIHSLLDEGKQSLTKLAAAWGG---------SGSEAYQGVQQKWDATATELNNALQNLART 74 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGGTC---------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777642111 223456666677766666666666666443
No 46
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=55.16 E-value=31 Score=22.47 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=0.0
Q ss_pred HHhccccccCC
Q psy8735 99 EEVGIETDEMV 109 (115)
Q Consensus 99 EelGiEtDe~v 109 (115)
+=-|+|.|+|.
T Consensus 83 DpTG~EpdDhL 93 (96)
T 2ic9_A 83 DPTGIEPDDHL 93 (96)
T ss_dssp -----------
T ss_pred CCCCCCCcccc
Confidence 33588877754
No 47
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.98 E-value=27 Score=21.98 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLSRN 47 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~~~ 47 (115)
..-++-.|.+|+.++..+....+.++++
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~ 49 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQ 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556666666666666666665543
No 48
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=54.75 E-value=18 Score=23.94 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=9.6
Q ss_pred chHHHHHHHHHHHHccCCHH
Q psy8735 2 DDKEKVKSKLKQLSQQMTEA 21 (115)
Q Consensus 2 ~~~~~l~seL~~L~s~lt~~ 21 (115)
.+|++|..|+....++|+++
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iA 54 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTA 54 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444443
No 49
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=51.54 E-value=29 Score=21.23 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYPK 92 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E~~p~ 92 (115)
.++......++..+..|...|.+|.+.=.. ..-..|......|...=+-..++++.|...+..
T Consensus 16 ~~i~~~~~~i~~~l~~l~~~v~~L~~~W~G---------~A~~ay~~~~~~W~~~~~~l~~~L~~i~~~l~~ 78 (96)
T 3h6p_C 16 GDMAGYAGTLQSLGADIASEQAVLSSAWQG---------DTGITYQGWQTQWNQALEDLVRAYQSMSGTHES 78 (96)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTGGGCCT---------TSSSCHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888889999999999999752211 112346677777777777777888877666554
No 50
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=51.52 E-value=39 Score=20.69 Aligned_cols=79 Identities=9% Similarity=0.102 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHccC-CHHHH---HHHHHHHHHHHHHHHHHHHHhhh-cC-----CCCChhh-------hcHHhHHHHHHH
Q psy8735 5 EKVKSKLKQLSQQM-TEAEA---KQKKAELQAELEEKKSKLEKLSR-NV-----NVISEGE-------VDKKTITDTKEK 67 (115)
Q Consensus 5 ~~l~seL~~L~s~l-t~~el---~~~i~~L~~e~~~l~~rL~~l~~-~~-----~~Vs~ee-------~~~~~v~~~~~k 67 (115)
...+..|.+....+ ..+.+ ......+..++...+.++..+.. |. ...+|++ .. .+...|..
T Consensus 19 ~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~--~l~~rw~~ 96 (119)
T 3uun_A 19 LSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMN--LLNSRWEC 96 (119)
T ss_dssp HHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HHHHHHHH
Confidence 34445555543322 23333 44446778888888888888854 22 2334443 34 57778888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8735 68 MVKEYNKRKRMCTEMLEA 85 (115)
Q Consensus 68 ~~~~w~kRKRi~~di~d~ 85 (115)
....+..|++...+.+..
T Consensus 97 L~~~~~~R~~~Le~aL~~ 114 (119)
T 3uun_A 97 LRVASMEKQSNLHRVLMD 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999998877776643
No 51
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=50.68 E-value=40 Score=25.49 Aligned_cols=40 Identities=10% Similarity=0.336 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 5 EKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 5 ~~l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.++..++..|... +.-|...+..++.++..+++.|+.|++
T Consensus 57 ~eL~~ql~~L~ar--Ne~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 57 HQLEARIDSLAAR--NSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444333 333666677777777777777777764
No 52
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=50.50 E-value=26 Score=22.21 Aligned_cols=24 Identities=42% Similarity=0.476 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l 44 (115)
.++...+..|+.++..|..++..|
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQL 62 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544
No 53
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=50.47 E-value=82 Score=25.33 Aligned_cols=64 Identities=9% Similarity=0.226 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 19 TEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAI 86 (115)
Q Consensus 19 t~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I 86 (115)
+.+.+..+-..|+.++.....++..|...+. .+.... .+...|.........|++-...++.-+
T Consensus 36 sVe~LLqKH~~lE~eI~a~~~~v~~l~~~a~--~~~~~~--~L~~~y~~L~~~a~~Rr~~Le~L~qFl 99 (450)
T 3r6n_A 36 SVEQHINSHRGIHNSIGDYRWQLDKIKADLR--EKSAIY--QLEEEYENLLKASFERMDHLRQLQNII 99 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777889999999999999975332 245677 899999999999999998876655433
No 54
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=50.03 E-value=39 Score=20.17 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy8735 24 KQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYP 91 (115)
Q Consensus 24 ~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E~~p 91 (115)
.....+++..+..|...+..|.+.=.. .....|......|+.-=+-+.++++.|...+.
T Consensus 19 ~~~~~~l~~~l~~L~~~~~~L~~~W~G---------~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~ 77 (97)
T 2vs0_A 19 GQGSDQIRQILSDLTRAQGEIAANWEG---------QAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLN 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCS---------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555431111 12234555556777666666677766655443
No 55
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=49.96 E-value=29 Score=18.63 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.||...+++|-.++..++..+..|++
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56777788888888888877777764
No 56
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=49.62 E-value=51 Score=21.41 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=10.0
Q ss_pred CchHHHHHHHHHHHHccCCH
Q psy8735 1 MDDKEKVKSKLKQLSQQMTE 20 (115)
Q Consensus 1 ~~~~~~l~seL~~L~s~lt~ 20 (115)
|.+|+.|..|+....++|++
T Consensus 4 M~~i~eLq~e~~~~E~QL~~ 23 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVT 23 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444443
No 57
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=49.49 E-value=28 Score=18.35 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.+|...+++|-.++..++..+..|++
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 36777888888888888888877764
No 58
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=49.28 E-value=28 Score=18.41 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.+|...+++|-.++..++..+..|++
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 57788888888888888888888875
No 59
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=47.66 E-value=31 Score=21.43 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 23 AKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 23 l~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.+..+..|..+|..++.++..|..
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~ 43 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQT 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889999999999988864
No 60
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=47.12 E-value=53 Score=20.94 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhc
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVD 57 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~ 57 (115)
.++...+...+..|.+++..|..+.+ ...+||.++.
T Consensus 15 ~~fe~rL~~Yr~~IeelE~~L~s~s~-~~~~Tpq~L~ 50 (93)
T 3t98_B 15 QQFEVQLQQYRQQIEELENHLATQAN-NSHITPQDLS 50 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHH-HTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCHHHHH
Confidence 34444555555555555555555432 2345555544
No 61
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.03 E-value=22 Score=19.31 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=13.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Q psy8735 17 QMTEAEAKQKKAELQAELEEKKS 39 (115)
Q Consensus 17 ~lt~~el~~~i~~L~~e~~~l~~ 39 (115)
.+|.++.+.+|..|+.+...+++
T Consensus 7 ~mTLeEtkeQi~~l~~kl~~Lke 29 (38)
T 2l5g_A 7 RMSLEETKEQILKLEEKLLALQE 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666655555543
No 62
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=46.52 E-value=10 Score=25.82 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=32.8
Q ss_pred HHHHHHHHHccCC--HHHHHHHHHHHHHHHHH-HHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHH
Q psy8735 7 VKSKLKQLSQQMT--EAEAKQKKAELQAELEE-KKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRK 76 (115)
Q Consensus 7 l~seL~~L~s~lt--~~el~~~i~~L~~e~~~-l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRK 76 (115)
.+.+|..|-++.+ .+.++..+.+....-.+ ...++.....--.++||+.+. ++...|.+....|..|.
T Consensus 60 ~r~~l~~Li~a~~fDeaav~al~~~~~~~~~e~~~~~~~~~~~~~~vLTPEQr~--q~~~~~~kr~~~~~~~~ 130 (138)
T 3oeo_A 60 ERRAMHDIITSDTFDKVKAEAQIAKMEEQRKANMLAHMETQNKIYNILTPEQKK--QFNANFEKRLTERPAAK 130 (138)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHGGGSHHHHHHHHHHHHHHHHHHTTSCHHHHH--HHHHHTC----------
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHhhccc
Confidence 3456666665544 34444444443332222 222222222344789999999 99999999999998764
No 63
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=46.51 E-value=34 Score=21.19 Aligned_cols=26 Identities=42% Similarity=0.479 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
..++...+..|+.++..|..++..|.
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666554
No 64
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=45.94 E-value=32 Score=24.46 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHH-HHHHHHHHHHHH
Q psy8735 23 AKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVK-EYNKRKRMCTEM 82 (115)
Q Consensus 23 l~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~-~w~kRKRi~~di 82 (115)
.+.++..|..++......|..|-.+ ...+++... .+.++....+. .-..|=++..++
T Consensus 83 ~r~~~~~Lr~ql~akr~EL~aL~~a-~~~DeakI~--aL~~Ei~~Lr~qL~~~R~k~~~em 140 (175)
T 3lay_A 83 YYTQTSALRQQLISKRYEYNALLTA-SSPDTAKIN--AVAKEMESLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS-SSCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777777777776653 557777777 77666655554 333444444443
No 65
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=45.57 E-value=26 Score=24.41 Aligned_cols=62 Identities=13% Similarity=0.310 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-cCC------CCCh---hhhcHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLSR-NVN------VISE---GEVDKKTITDTKEKMVKEYNKRKRMCTEML 83 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~~-~~~------~Vs~---ee~~~~~v~~~~~k~~~~w~kRKRi~~di~ 83 (115)
.+.+...-..++.++.....++..+.. |.. .-++ .-.. .+...|......|..|+......+
T Consensus 48 ve~ll~~H~~l~~ei~~~~~~~~~~~~~G~~Ll~~~~~~~~~i~~~l~--~L~~~w~~L~~~~~~R~~~L~q~l 119 (218)
T 3fb2_A 48 AEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLD--ILDQERADLEKAWVQRRMMLDQCL 119 (218)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556677777776677766642 221 1112 2345 788999999999999998877654
No 66
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=45.13 E-value=15 Score=18.81 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 22 EAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 22 el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
-+...|+.|+..|...+.++..|..
T Consensus 4 aleqkiaaleqkcaaceqkiaaleq 28 (32)
T 4g1a_A 4 ALEQKIAALEQKCAACEQKIAALEQ 28 (32)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999888854
No 67
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=44.44 E-value=31 Score=17.47 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy8735 25 QKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 25 ~~i~~L~~e~~~l~~rL~~l~ 45 (115)
..-+.|++..+.++.+|+.|.
T Consensus 8 kkcaalesklqalekkleale 28 (31)
T 3ljm_A 8 KKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555543
No 68
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=43.82 E-value=19 Score=20.92 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 24 KQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 24 ~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
...+..|+.++..|+..|..|.+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788888899999988887754
No 69
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=43.26 E-value=1e+02 Score=23.10 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=23.5
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHH--hcCcCcHHHHH
Q psy8735 60 TITDTKE-KMVKEYNKRKRMCTEMLEAIL--ENYPKSKKILL 98 (115)
Q Consensus 60 ~v~~~~~-k~~~~w~kRKRi~~di~d~I~--E~~p~~kk~L~ 98 (115)
.+...|. +....-..|||.+.+-|-+-+ .+-|.++..++
T Consensus 86 qL~etH~qRV~a~LNerrr~Ale~y~~AL~~q~~pP~~~~Vl 127 (239)
T 3k66_A 86 EIEAVHEERVQAMLNEKKRDATHDYRQALATHVNKPNKHSVL 127 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Confidence 5555553 333444788888888887776 45455554443
No 70
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=42.76 E-value=39 Score=18.09 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.||...+++|-.++..|+..+..|++
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46777778888888888877777764
No 71
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=42.74 E-value=16 Score=22.37 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=19.5
Q ss_pred HHHHHHHHHh------cCcCcHHHHHHHhccc
Q psy8735 79 CTEMLEAILE------NYPKSKKILLEEVGIE 104 (115)
Q Consensus 79 ~~di~d~I~E------~~p~~kk~L~EelGiE 104 (115)
+..|++.|.+ |+|.+-.++.+.+||-
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS 37 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLS 37 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCC
Confidence 3445555544 3999999999999994
No 72
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=42.61 E-value=33 Score=19.75 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
+++...+..|..++..|+.++..|.
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777778888888777664
No 73
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=41.89 E-value=19 Score=28.62 Aligned_cols=37 Identities=8% Similarity=0.201 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhh--------hcCCCCChhhhcHHhHHHHH
Q psy8735 27 KAELQAELEEKKSKLEKLS--------RNVNVISEGEVDKKTITDTK 65 (115)
Q Consensus 27 i~~L~~e~~~l~~rL~~l~--------~~~~~Vs~ee~~~~~v~~~~ 65 (115)
..+|..+...++.+|+.+. .....|+++++. .+...|
T Consensus 422 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 466 (468)
T 3pxg_A 422 AASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIA--MVVSSW 466 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGGGHHHHHHTTCCCTHHHH--HHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccCHHHHH--HHHHHH
Confidence 3444555555555555542 134678888888 666554
No 74
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=41.56 E-value=33 Score=16.88 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 22 EAKQKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 22 el~~~i~~L~~e~~~l~~rL~~l 44 (115)
+++.++.+|+-++..+...+..|
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 45666777777777776665544
No 75
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=41.32 E-value=82 Score=24.38 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHH
Q psy8735 25 QKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNK 74 (115)
Q Consensus 25 ~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~k 74 (115)
..+.-+..|+..+...|+.+. +..+|.+... ++.+.+++.++.|++
T Consensus 131 ~~~~y~~~el~~l~~~LE~~t--G~~i~~e~L~--eai~~~N~~r~~~~~ 176 (385)
T 3o3m_B 131 AGVKYLISEYKGVKRELEEIC--GYEIEEAKIH--ESIEVYNEHRKTMRD 176 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--SSCCCHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHH--HHHHHHHHHHHHHHH
Confidence 345556677777777777654 3678888888 888888777777754
No 76
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=41.23 E-value=35 Score=22.13 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.+++.++..|+.++..+++.|..|++
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47788889999999999999999985
No 77
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=40.84 E-value=40 Score=17.70 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.||...|++|-.++..++..+..|++
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46778888888888888888777764
No 78
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=40.80 E-value=40 Score=17.70 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.++...+++|=.++..++..+..|++
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46778888888888888888887764
No 79
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=40.43 E-value=48 Score=20.95 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
+.+|...|..|+.++..++..+..|+.
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888888777777764
No 80
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=40.39 E-value=87 Score=24.45 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHH
Q psy8735 27 KAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNK 74 (115)
Q Consensus 27 i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~k 74 (115)
+.-+..|+..+...|+.+.+ ..+|.+.+. ++.+.+++.++.|++
T Consensus 153 ~~y~~~el~~l~~~LE~~tG--~ki~~e~L~--eai~~~N~~r~~~~~ 196 (408)
T 3o3m_A 153 IDYIKAQFEEAIKQLEIISG--KKFDPKKFE--EVMKISAENGRLWKY 196 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--CCCCHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHC--CCCCHHHHH--HHHHHHHHHHHHHHH
Confidence 34455555556666555432 556666666 666666666666643
No 81
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.06 E-value=64 Score=21.73 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8735 27 KAELQAELEEKKSKLEK 43 (115)
Q Consensus 27 i~~L~~e~~~l~~rL~~ 43 (115)
+.+|+.+|..+..+|..
T Consensus 73 vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 82
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=39.77 E-value=38 Score=19.32 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy8735 26 KKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 26 ~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.+..|+..+..|+..|..|++
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356666666667766666654
No 83
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=39.63 E-value=45 Score=20.81 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy8735 25 QKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 25 ~~i~~L~~e~~~l~~rL~~l~ 45 (115)
..+..|..++..|..+|..|+
T Consensus 66 ~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 66 SEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334556666667777776665
No 84
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=39.08 E-value=1.2e+02 Score=23.08 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=17.7
Q ss_pred HHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 7 VKSKLKQLSQQM--TEAEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 7 l~seL~~L~s~l--t~~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
+.+.+..+.+.. -.+.+..++..|+.++++++...+.+.
T Consensus 172 ~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 172 LQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455544333 233444444555555555544444443
No 85
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=38.96 E-value=49 Score=22.50 Aligned_cols=8 Identities=13% Similarity=0.439 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy8735 31 QAELEEKK 38 (115)
Q Consensus 31 ~~e~~~l~ 38 (115)
+.++..++
T Consensus 116 ~~~~~~l~ 123 (138)
T 3hnw_A 116 KSEINKYQ 123 (138)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 86
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=38.94 E-value=67 Score=19.72 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHccCCHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Q psy8735 3 DKEKVKSKLKQLSQQMTEAEAK--QKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 3 ~~~~l~seL~~L~s~lt~~el~--~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
+|+.+++.-++|..++...+-+ .++..++..+..++..|..++.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~ 47 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKE 47 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777776655433 2345556666666666666654
No 87
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=38.60 E-value=45 Score=17.64 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 22 EAKQKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 22 el~~~i~~L~~e~~~l~~rL~~l 44 (115)
...+.|..|+.++..|+.++-.|
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 34566777777777777666443
No 88
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=38.28 E-value=61 Score=19.04 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
+..|..+|..|+.+|.+++..++.|+
T Consensus 20 n~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 20 NVQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999888777664
No 89
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=37.89 E-value=40 Score=21.85 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 19 TEAEAKQKKAELQAELEEKKSKL 41 (115)
Q Consensus 19 t~~el~~~i~~L~~e~~~l~~rL 41 (115)
|..+|..+|.+|.+++..|+.-.
T Consensus 48 t~~eL~~EI~~L~~eI~~LE~iq 70 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLEKMQ 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777776665433
No 90
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=37.44 E-value=13 Score=22.08 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q psy8735 25 QKKAELQAELEEKKSKLEKLSRN 47 (115)
Q Consensus 25 ~~i~~L~~e~~~l~~rL~~l~~~ 47 (115)
..+..|+..+..|+..|..|.++
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l~~~ 80 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKVHSS 80 (81)
T ss_dssp HHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 56777777777777777776554
No 91
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=37.33 E-value=17 Score=24.61 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy8735 27 KAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 27 i~~L~~e~~~l~~rL~~l~ 45 (115)
|.++..|+..+..++..|+
T Consensus 38 i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 38 YAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554
No 92
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=36.81 E-value=92 Score=20.71 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=13.4
Q ss_pred HHHHHHHHHHH--HccCCHHHHHHHHHHHHHHH
Q psy8735 4 KEKVKSKLKQL--SQQMTEAEAKQKKAELQAEL 34 (115)
Q Consensus 4 ~~~l~seL~~L--~s~lt~~el~~~i~~L~~e~ 34 (115)
+..|+++|..+ .++.-..+|+..|.+|+.+.
T Consensus 24 ie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL 56 (120)
T 3i00_A 24 ISGLKAQLENMKTESQRVVLQLKGHVSELEADL 56 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 22333444555555554443
No 93
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=36.68 E-value=97 Score=20.95 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHH
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRK 76 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRK 76 (115)
++|...|..|+.++..++..+..+.. +..|.+.... .++.....-..+--+|.
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e~-~~~~~~~~~e--~le~~la~KkAEleKtq 116 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAEE-NNNVEDYFKE--GLEKTIAAKKAELEKTE 116 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC-----CHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHh-cccchHHHHH--HHHHHHHHHHHHHHHHH
Confidence 78899999999999999999988775 3455555566 66666655555544443
No 94
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.67 E-value=45 Score=26.40 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 3 DKEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLE 42 (115)
Q Consensus 3 ~~~~l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~ 42 (115)
+|.+++.++..|.... .++...|.+++.++..+.++|.
T Consensus 4 ~~~~~~~~~~~l~~~~--~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 4 KIAALKEKIAALKEKI--AALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp -CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777664 6667777777776666666553
No 95
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=36.38 E-value=19 Score=22.51 Aligned_cols=44 Identities=11% Similarity=0.268 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHccCCHHHH--HHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 3 DKEKVKSKLKQLSQQMTEAEA--KQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 3 ~~~~l~seL~~L~s~lt~~el--~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
+|+.|++..++|..+++..+- ..++..+...+..++..|..++.
T Consensus 4 eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~ 49 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRA 49 (86)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444332 23345555555555665555543
No 96
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=36.08 E-value=91 Score=20.43 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=50.3
Q ss_pred HccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 15 SQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAI 86 (115)
Q Consensus 15 ~s~lt~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I 86 (115)
.+.+|+++|.-.-..|.=+|..|..+|+.+.. ... .+.++|...++.+..=||.|..+=..+
T Consensus 13 KAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE--------~~a--ql~Re~~eK~re~e~~Kr~~~~L~~~~ 74 (103)
T 4h22_A 13 KAMVSNAQLDNEKTNFMYQVDTLKDMLLELEE--------QLA--ESRRQYEEKNKEFEREKHAHSILQFQF 74 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888988888899999999999988753 366 888899999999999999888765544
No 97
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=35.53 E-value=74 Score=19.21 Aligned_cols=53 Identities=11% Similarity=0.183 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHH
Q psy8735 18 MTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRK 76 (115)
Q Consensus 18 lt~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRK 76 (115)
+|.+||..++.+|..+.-.|.-+. ..+..-.|..+. .+-+.-.+....-+.|.
T Consensus 16 ~s~eEL~~~L~elk~ELf~LR~q~----atgql~n~~~ir--~vRr~IARi~Tvl~er~ 68 (72)
T 3v2d_2 16 LSPVELEKLVREKKRELMELRFQA----SIGQLSQNHKIR--DLKRQIARLLTVLNEKR 68 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH----HTTCCCCTTHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH----HhcCCCCcHHHH--HHHHHHHHHHHHHHHHH
Confidence 455666666665555544433221 233456788888 77777666666555543
No 98
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=35.50 E-value=54 Score=20.09 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHH
Q psy8735 22 EAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKE 71 (115)
Q Consensus 22 el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~ 71 (115)
+|...|..+..+..++..+|..+.........++.. .+...|.+....
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~--~~~~~lek~L~~ 50 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEIS--NLKAAFEKNINT 50 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 566777788888888888777775322223356666 666666655543
No 99
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=35.27 E-value=48 Score=17.02 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy8735 24 KQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 24 ~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
...+..|.+-++++++|++.|.
T Consensus 5 ee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666667777776664
No 100
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=35.26 E-value=64 Score=21.89 Aligned_cols=41 Identities=20% Similarity=0.355 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHccCCH-----HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 5 EKVKSKLKQLSQQMTE-----AEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 5 ~~l~seL~~L~s~lt~-----~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
+.|..++..|...+.. .++...+..|+..+..+..++..++
T Consensus 32 ~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 32 KDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555333222 6677777778888888887777775
No 101
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=35.08 E-value=19 Score=19.21 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 18 MTEAEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 18 lt~~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.+..-++..|..|+.++..+++++..+..
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888899999999999888887753
No 102
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=34.60 E-value=46 Score=21.58 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 23 AKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 23 l~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
|+..+..|+.++..++.+|..|+
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~ 24 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTN 24 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677777777777776665
No 103
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.51 E-value=1.3e+02 Score=21.84 Aligned_cols=79 Identities=11% Similarity=0.239 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCChhhhcHHhHHHHHHHHHHHHHHHHH
Q psy8735 4 KEKVKSKLKQLSQQM-----TEAEAKQKKAELQAELEEKKSKLEKLSRNV-NVISEGEVDKKTITDTKEKMVKEYNKRKR 77 (115)
Q Consensus 4 ~~~l~seL~~L~s~l-----t~~el~~~i~~L~~e~~~l~~rL~~l~~~~-~~Vs~ee~~~~~v~~~~~k~~~~w~kRKR 77 (115)
+..++.+++.+...+ ...++..++..++.++.....++...+..- ..-++.+.. .+.++... ..+|..
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~--aL~kEie~----~~~~i~ 107 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELR--SLNIEEDI----AKERSN 107 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHH--HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHH--HHHHHHHH----HHHHHH
Confidence 444444444444433 234566667777777777777777765311 122666666 66655543 334544
Q ss_pred HHHHHHHHHHh
Q psy8735 78 MCTEMLEAILE 88 (115)
Q Consensus 78 i~~di~d~I~E 88 (115)
-+.+-+-.+.+
T Consensus 108 ~lE~eile~~e 118 (256)
T 3na7_A 108 QANREIENLQN 118 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 104
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=34.23 E-value=57 Score=17.51 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 10 KLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEK 43 (115)
Q Consensus 10 eL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~ 43 (115)
++..|+..+ +--...+..|+.++..|+.++..
T Consensus 7 ~mq~LNdrl--AsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 7 ELQELNDRF--ANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555544 22356778888888888888754
No 105
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=33.85 E-value=74 Score=21.64 Aligned_cols=60 Identities=10% Similarity=0.258 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCC----h------hhhcHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSR-NVNVIS----E------GEVDKKTITDTKEKMVKEYNKRKRMCTEM 82 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~-~~~~Vs----~------ee~~~~~v~~~~~k~~~~w~kRKRi~~di 82 (115)
..+...-..+..++...+.++..+.. |..++. | .-.. .+...|......|..|+.-..+.
T Consensus 36 ~~ll~~h~~~~~ei~~~~~~~~~~~~~g~~L~~~~~~~~~~~i~~~l~--~L~~~w~~L~~~~~~r~~~L~~~ 106 (214)
T 1s35_A 36 EQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLE--GLDTGWDALGRMWESRSHTLAQC 106 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556777777777778777753 222111 1 2356 88899999999999999865543
No 106
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.55 E-value=59 Score=21.15 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l 44 (115)
..++..|..|+.++..|..+++.|
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666555554
No 107
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=33.54 E-value=89 Score=19.58 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=27.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHH--------------HHHHHHHHHhhh--cCCCCChhhhc
Q psy8735 11 LKQLSQQMTEAEAKQKKAELQAEL--------------EEKKSKLEKLSR--NVNVISEGEVD 57 (115)
Q Consensus 11 L~~L~s~lt~~el~~~i~~L~~e~--------------~~l~~rL~~l~~--~~~~Vs~ee~~ 57 (115)
|+.....+|.++|..-+.+|..-+ .+-+.+|..++. ....|||+|..
T Consensus 17 LRA~arel~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~eeL~ 79 (86)
T 3nr7_A 17 LRAQARESTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELL 79 (86)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 334445567777777666666533 334445666553 45678888764
No 108
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=33.16 E-value=52 Score=20.20 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 23 AKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 23 l~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
+...|..|+.+...+....+.|+
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554444443
No 109
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.15 E-value=85 Score=19.24 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy8735 27 KAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 27 i~~L~~e~~~l~~rL~~l~ 45 (115)
|..|+.++.+..+.+..|+
T Consensus 42 I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 110
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=32.89 E-value=67 Score=17.98 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 22 EAKQKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 22 el~~~i~~L~~e~~~l~~rL~~l 44 (115)
++...+..|+..++.|+.|+..|
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArL 24 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARL 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666555
No 111
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=32.82 E-value=1.1e+02 Score=24.31 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHccCC------HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 4 KEKVKSKLKQLSQQMT------EAEAKQKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 4 ~~~l~seL~~L~s~lt------~~el~~~i~~L~~e~~~l~~rL~~l 44 (115)
+++|+++.+.++..+. .+++..+..+|..+++.++..+..+
T Consensus 44 ~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (421)
T 1ses_A 44 LQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREK 90 (421)
T ss_dssp HHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666655543 2345555555555555555544443
No 112
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=32.80 E-value=16 Score=18.11 Aligned_cols=8 Identities=50% Similarity=0.634 Sum_probs=5.8
Q ss_pred HHHHHHHH
Q psy8735 70 KEYNKRKR 77 (115)
Q Consensus 70 ~~w~kRKR 77 (115)
=.|.||||
T Consensus 17 iSWiK~kr 24 (26)
T 3qrx_B 17 ISWIKRKR 24 (26)
T ss_pred HHHHHHHh
Confidence 35888887
No 113
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=32.45 E-value=90 Score=20.00 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=9.5
Q ss_pred ChhhhcHHhHHHHHHHHHHHHH
Q psy8735 52 SEGEVDKKTITDTKEKMVKEYN 73 (115)
Q Consensus 52 s~ee~~~~~v~~~~~k~~~~w~ 73 (115)
+.++++ ...++.........
T Consensus 69 d~e~ik--~k~~eL~~~~~~i~ 88 (120)
T 2p32_A 69 EKEEFE--HQQKDLEGLANPII 88 (120)
T ss_dssp CHHHHH--HHHHHHHHHHHHHH
T ss_pred CHHHHH--HHHHHHHHHHHHHH
Confidence 445555 44455544444443
No 114
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=32.24 E-value=84 Score=18.87 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHH
Q psy8735 18 MTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRK 76 (115)
Q Consensus 18 lt~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRK 76 (115)
+|.+||..++.+|..+.-.+.-+.. .|+.+-.|..+. .+.+.-.+....-+.|.
T Consensus 12 ~s~~EL~~~l~elk~ELf~LR~q~a---tggql~n~~~ir--~vRr~IARi~Tvl~er~ 65 (71)
T 1vq8_V 12 MTPAEREAELDDLKTELLNARAVQA---AGGAPENPGRIK--ELRKAIARIKTIQGEEG 65 (71)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH---TTCCCCCHHHHH--HHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH---hcCCccChHHHH--HHHHHHHHHHHHHHHHH
Confidence 4666776666666666444432111 135677898888 77777666665555543
No 115
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=32.23 E-value=59 Score=17.13 Aligned_cols=26 Identities=8% Similarity=0.240 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.++...+++|=.++..++..+..|++
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56777777887888888877777764
No 116
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.10 E-value=45 Score=25.94 Aligned_cols=27 Identities=11% Similarity=-0.005 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
...|+..+..++..+..++.+|..|..
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666655543
No 117
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=32.02 E-value=1e+02 Score=23.09 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=43.0
Q ss_pred HHHHHccCC-----HHHHHHHHHHHHHHHHHHHHHHHHhhh-----------------cCCCCChhhhcHHhHHHHHHHH
Q psy8735 11 LKQLSQQMT-----EAEAKQKKAELQAELEEKKSKLEKLSR-----------------NVNVISEGEVDKKTITDTKEKM 68 (115)
Q Consensus 11 L~~L~s~lt-----~~el~~~i~~L~~e~~~l~~rL~~l~~-----------------~~~~Vs~ee~~~~~v~~~~~k~ 68 (115)
|..|.+.+. ..++.-+|..|..+|.....-+..|+. ....-|++|.. .+...+.+|
T Consensus 74 l~a~~~~~~~~~~~l~~lD~ei~sLkrqIq~~kQ~~~~L~~~~~~~Ie~~R~pe~~~k~s~~WTeEE~~--lFleAl~kY 151 (235)
T 2iw5_B 74 VEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTEEQL--LAVQAIRKY 151 (235)
T ss_dssp HHHHTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTGGGCCCCCCCCCCSSCCHHHHH--HHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCccCCCCCHHHHH--HHHHHHHHH
Confidence 344555553 356777888888888777777766621 12355789999 888888888
Q ss_pred HHHHHHH
Q psy8735 69 VKEYNKR 75 (115)
Q Consensus 69 ~~~w~kR 75 (115)
-+-|..=
T Consensus 152 GKDW~~I 158 (235)
T 2iw5_B 152 GRDFQAI 158 (235)
T ss_dssp SSCHHHH
T ss_pred CcCHHHH
Confidence 8777554
No 118
>2yxy_A Hypothetical conserved protein, GK0453; alpha and beta proteins (A+B) class, structural GENO unknown function, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=31.65 E-value=60 Score=21.73 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=17.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHH
Q psy8735 16 QQMTEAEAKQKKAELQAELEEK 37 (115)
Q Consensus 16 s~lt~~el~~~i~~L~~e~~~l 37 (115)
|.+|..||+.+|+.|+.+-.+.
T Consensus 12 SeMS~~EL~~EI~~L~ekarKA 33 (115)
T 2yxy_A 12 SEMTKEELQQEIAMLTEKARKA 33 (115)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHH
Confidence 7889999999999988765443
No 119
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=31.58 E-value=1.1e+02 Score=20.07 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8735 24 KQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILEN 89 (115)
Q Consensus 24 ~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E~ 89 (115)
.+++.+.+.++.++...+..|+.. .. .++++-..|-.--|.-.-+|.+..+.+-||
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~--------ve--~lEkERDFYF~KLRdIEiLcQe~~~~~~e~ 65 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGT--------VS--TLEIEREFYFNKLRDIEILVHTTQDLINEG 65 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 444445555555555555555432 33 566667788888888889999999998875
No 120
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=31.50 E-value=94 Score=19.23 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=20.0
Q ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 13 QLSQQMTEAEAKQKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 13 ~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~l 44 (115)
.--+.+|-+||...+-+++.++.....++..|
T Consensus 9 a~y~~ltreELi~l~lk~~~~l~~k~~~v~eL 40 (75)
T 3tso_C 9 AGYRSLTYEEVLQELVKHKELLRRKDTHIREL 40 (75)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467899999988877777665544444443
No 121
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=31.47 E-value=90 Score=19.00 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-cC-----CCCChhhhc-----HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 24 KQKKAELQAELEEKKSKLEKLSR-NV-----NVISEGEVD-----KKTITDTKEKMVKEYNKRKRMCTEMLEA 85 (115)
Q Consensus 24 ~~~i~~L~~e~~~l~~rL~~l~~-~~-----~~Vs~ee~~-----~~~v~~~~~k~~~~w~kRKRi~~di~d~ 85 (115)
......+..++...+.++..+.. |. ...++++.. -+.+...|......+..|++-..+.+..
T Consensus 42 l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~ 114 (118)
T 3uul_A 42 FATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDALME 114 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445678888888888888853 22 234555422 0156677888888888888777666543
No 122
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=31.27 E-value=62 Score=17.07 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.++...+++|=.++..++..+..|++
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46777788888888888887777764
No 123
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=31.17 E-value=90 Score=18.89 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 5 EKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 5 ~~l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~l 44 (115)
..|..++..+...++..+ .+..|+.+.-.+.+.|..+
T Consensus 27 ~~LD~~I~~le~~~~~~~---~l~~LKk~KL~LKDeI~~l 63 (76)
T 1zhc_A 27 NQLDDDIKTAEQQNASDA---EVSHMKKQKLKLKDEIHSM 63 (76)
T ss_dssp HHHHHHHHHHHTTCSCHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChH---HHHHHHHHHHHhHHHHHHH
Confidence 345566666666665444 6666666666666666554
No 124
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=31.03 E-value=1e+02 Score=19.41 Aligned_cols=12 Identities=25% Similarity=0.108 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q psy8735 30 LQAELEEKKSKL 41 (115)
Q Consensus 30 L~~e~~~l~~rL 41 (115)
++..|..+..-|
T Consensus 42 i~~~i~e~~~wL 53 (113)
T 3lof_A 42 VLDKCQEVISWL 53 (113)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 125
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=30.90 E-value=77 Score=22.99 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHhhhcCC
Q psy8735 20 EAEAKQKKAELQA---------ELEEKKSKLEKLSRNVN 49 (115)
Q Consensus 20 ~~el~~~i~~L~~---------e~~~l~~rL~~l~~~~~ 49 (115)
.+.+...+++++. +.++|++||.+|.+|..
T Consensus 154 ~~~I~~Rv~qIr~~ie~t~s~ydkEKLqERlAkLsGGVA 192 (194)
T 3m6c_A 154 AEAVANRAKHLRAEIDKSDSDWDREKLGERLAKLAGGVA 192 (194)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCcE
Confidence 3444455555544 34668888888876644
No 126
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=30.51 E-value=39 Score=23.49 Aligned_cols=26 Identities=4% Similarity=0.073 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHhccc
Q psy8735 79 CTEMLEAILENYPKSKKILLEEVGIE 104 (115)
Q Consensus 79 ~~di~d~I~E~~p~~kk~L~EelGiE 104 (115)
...++.++++.++.+..+|++.+|-.
T Consensus 47 ~~~lv~a~s~~~g~~~~~ll~~fG~~ 72 (181)
T 2kii_A 47 LFSIVQDVAQRLNMPIQDVVKAFGQF 72 (181)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34788999999999999999999853
No 127
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=30.40 E-value=80 Score=18.07 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 22 EAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 22 el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
+|-.++.+|..++..|...+..|+
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 128
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.88 E-value=30 Score=26.15 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 22 EAKQKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 22 el~~~i~~L~~e~~~l~~rL~~l 44 (115)
++..++..|..++..|.+-|..+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~a 80 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEA 80 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333
No 129
>2huj_A LIN2004 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.74A {Listeria innocua} SCOP: a.24.26.1
Probab=29.79 E-value=1.4e+02 Score=20.51 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC------CCCCh--hhhcHHhHHHHHHHHHHHHHH
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSRNV------NVISE--GEVDKKTITDTKEKMVKEYNK 74 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~~~------~~Vs~--ee~~~~~v~~~~~k~~~~w~k 74 (115)
.+|...+.+|-..+.++..+....+..+ ..|-| ++.. .+..+|..+...|.+
T Consensus 20 ~~L~~lteqLi~~~~e~~~ry~~~ke~~~e~DFy~eVKPf~d~vd--~~l~eW~~~a~~~I~ 79 (140)
T 2huj_A 20 MELLIRTEQLLLQNEKNWELYLSNREEEKPFDFYKDMKPFVDEAK--RCADDFLELAIPWVN 79 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCTTTTHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHH--HHHHHHHHHHHHHHH
Confidence 4588899999999999999999987533 33434 5566 889999999999998
No 130
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=29.61 E-value=1.3e+02 Score=20.13 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=22.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 16 QQMTEAEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 16 s~lt~~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
+.++.+++.....+|...+..++..|+-|..
T Consensus 58 ~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~ 88 (130)
T 4dnd_A 58 AAVGREELDWTTNELRNGLRSIEWDLEDLEE 88 (130)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888889999999999988864
No 131
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=28.84 E-value=97 Score=18.52 Aligned_cols=35 Identities=6% Similarity=0.035 Sum_probs=27.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 10 KLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 10 eL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~l 44 (115)
.|+.=-+.+|-+|+...+.+.+..+.+|+..++.|
T Consensus 15 slAae~~~~s~deL~~~l~eqee~n~~Le~YID~L 49 (64)
T 2hv8_D 15 SLAAEISSVSRDELMEAIQKQEEINFRLQDYIDRI 49 (64)
T ss_dssp HHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444467888999999988888888888888877
No 132
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=28.70 E-value=64 Score=21.95 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=18.0
Q ss_pred HccCCHHHHHHHHHHHHHHHHHH
Q psy8735 15 SQQMTEAEAKQKKAELQAELEEK 37 (115)
Q Consensus 15 ~s~lt~~el~~~i~~L~~e~~~l 37 (115)
-|.+|..||+.+|+.|+.+-.+.
T Consensus 29 ySeMS~~EL~~EI~~L~EKaRKA 51 (128)
T 1sf9_A 29 YSQMTPHELNTEIALLSEKARKA 51 (128)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHH
Confidence 47899999999999888755443
No 133
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=28.07 E-value=96 Score=18.26 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 18 MTEAEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 18 lt~~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
++.++|+.....+......+...|..|++
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~ 37 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEG 37 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777666666666666666666654
No 134
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=27.95 E-value=97 Score=19.52 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
+.+|...|.++..++..+++....|+.
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777666653
No 135
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.89 E-value=1.2e+02 Score=19.50 Aligned_cols=62 Identities=13% Similarity=0.334 Sum_probs=34.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcCCCCChhhhcHHhHHHHHHHHHH
Q psy8735 7 VKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLS-----RNVNVISEGEVDKKTITDTKEKMVK 70 (115)
Q Consensus 7 l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~l~-----~~~~~Vs~ee~~~~~v~~~~~k~~~ 70 (115)
.+.++..|...++.+ +..-...+.+...++.-|+.|. .++.+|..+-+.+..++........
T Consensus 24 ~~~e~~~L~~~l~eE--~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~ 90 (97)
T 2eqb_B 24 RDDEVKRLREDIAKE--NELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTE 90 (97)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555444333 3333455566777777777775 3567777776664445544444433
No 136
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=27.73 E-value=73 Score=16.77 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.+|...+++|=.++..++..+..|++
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46777888888888888887777764
No 137
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=27.64 E-value=28 Score=28.54 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=18.3
Q ss_pred HHhcCc-CcHHHHHHHhcccccc
Q psy8735 86 ILENYP-KSKKILLEEVGIETDE 107 (115)
Q Consensus 86 I~E~~p-~~kk~L~EelGiEtDe 107 (115)
|+|-+. +.+.+++|.||++.||
T Consensus 255 im~k~~hktpeeiyealgfn~de 277 (505)
T 3few_X 255 IMDKVDHKTPEEIYEALGFNNEE 277 (505)
T ss_dssp HHHHTTCCCHHHHHHHHTTTTTH
T ss_pred hHHhhccCCHHHHHHHhCCCccc
Confidence 555665 5789999999999998
No 138
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=26.66 E-value=2.2e+02 Score=21.89 Aligned_cols=84 Identities=10% Similarity=0.120 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHccCCH-HHHHHHHHHHHHHH---------------------HHHHHHHHHhh----hcCCCCChhhh
Q psy8735 3 DKEKVKSKLKQLSQQMTE-AEAKQKKAELQAEL---------------------EEKKSKLEKLS----RNVNVISEGEV 56 (115)
Q Consensus 3 ~~~~l~seL~~L~s~lt~-~el~~~i~~L~~e~---------------------~~l~~rL~~l~----~~~~~Vs~ee~ 56 (115)
++..+..++..|...++. ..+...+..+...+ ..|...+..|. .+...++|+..
T Consensus 227 ~~~~~~~ei~~l~~~i~~~~~l~~~l~~~~~~~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~l~~~I~~~~~~i~~~~~ 306 (346)
T 2nrj_A 227 NLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVLGHIENAAQKADQNKF 306 (346)
T ss_dssp GHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHH
Confidence 566777788888777766 33333334444333 34444444432 22235788999
Q ss_pred cHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 57 DKKTITDTKEKMVKEYNKRKRMCTEMLEAILE 88 (115)
Q Consensus 57 ~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E 88 (115)
. .+...+......|..=+..+..+...|.+
T Consensus 307 ~--~i~~~L~~a~~~W~~l~~~a~~l~~~~~~ 336 (346)
T 2nrj_A 307 K--FLKPNLNAAKDSWKTLRTDAVTLKEGIKE 336 (346)
T ss_dssp G--GGHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred H--HHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 9 89999999999999888777777665553
No 139
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.16 E-value=66 Score=15.74 Aligned_cols=17 Identities=47% Similarity=0.649 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8735 29 ELQAELEEKKSKLEKLS 45 (115)
Q Consensus 29 ~L~~e~~~l~~rL~~l~ 45 (115)
+|-++...+++||.+|+
T Consensus 5 elykeledlqerlrklr 21 (27)
T 3twe_A 5 ELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666666666664
No 140
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=26.04 E-value=1.3e+02 Score=19.01 Aligned_cols=69 Identities=22% Similarity=0.373 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHH
Q psy8735 2 DDKEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTE 81 (115)
Q Consensus 2 ~~~~~l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~d 81 (115)
+++..+..+|..|... -..+..++..|+.+...+...|..+... .. .+...-..|.+.|..-++-..+
T Consensus 4 ~~~~~l~~eL~~l~~e--E~~L~~eL~~lEke~~~l~~el~~le~E--------~~--~L~~eE~~~w~eyn~~~~ql~e 71 (96)
T 3q8t_A 4 SDSEQLQRELKELALE--EERLIQELEDVEKNRKVVAENLEKVQAE--------AE--RLDQEEAQYQREYSEFKRQQLE 71 (96)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHH--------HH--HHhhHHHHHHHHHHHHHHHHHH
Confidence 4678888888888765 5778888899999999999999888753 23 4444444444445554444433
Q ss_pred H
Q psy8735 82 M 82 (115)
Q Consensus 82 i 82 (115)
+
T Consensus 72 ~ 72 (96)
T 3q8t_A 72 L 72 (96)
T ss_dssp H
T ss_pred H
Confidence 3
No 141
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=25.92 E-value=91 Score=18.43 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 23 AKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 23 l~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
.+.+|.+|...+..|+..|+.++
T Consensus 54 ~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566667777777777776665
No 142
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=25.64 E-value=66 Score=21.45 Aligned_cols=17 Identities=18% Similarity=0.431 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy8735 28 AELQAELEEKKSKLEKL 44 (115)
Q Consensus 28 ~~L~~e~~~l~~rL~~l 44 (115)
..|...+..|+.+|..+
T Consensus 19 ~~l~~~~~~l~~~l~~~ 35 (182)
T 3kqg_A 19 SALNTKIRALQGSLENM 35 (182)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 143
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=25.53 E-value=76 Score=22.66 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHhcccccc
Q psy8735 69 VKEYNKRKRMCTEMLEAILENYPKSKKILLEEVGIETDE 107 (115)
Q Consensus 69 ~~~w~kRKRi~~di~d~I~E~~p~~kk~L~EelGiEtDe 107 (115)
..+|++-+ ....|+..+++.++.+..+|++.+|+...+
T Consensus 7 i~~wk~~q-kv~sil~~vAek~~~~~Eely~~i~w~L~~ 44 (188)
T 1yz7_A 7 LQEFKRAQ-KAENLLKLAAEKLGKDFETAWREVWVPLEE 44 (188)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHTTCCHHHHHHHTHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44565444 456788999999999999999999976554
No 144
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=25.37 E-value=80 Score=20.60 Aligned_cols=43 Identities=12% Similarity=0.089 Sum_probs=34.9
Q ss_pred CCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcH
Q psy8735 50 VISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYPKSK 94 (115)
Q Consensus 50 ~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E~~p~~k 94 (115)
..|++++. .|...|......+..+..+..+++..+.+.+|..+
T Consensus 3 ~~s~~~~~--~V~~sw~~v~~~~~~~~~~g~~~y~rlF~~~P~~k 45 (145)
T 1x9f_B 3 QCGVLEGL--KVKSEWGRAYGSGHDREAFSQAIWRATFAQVPESR 45 (145)
T ss_dssp CCCHHHHH--HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCHHHHH--HHHHHHHHHHcccccHHHHHHHHHHHHHHhChHHH
Confidence 57889999 99999888765555578889999999999999744
No 145
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.99 E-value=95 Score=18.99 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 19 TEAEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 19 t~~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
|.++|...|.....++..+..+|..|.
T Consensus 29 tIeeLn~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 29 ALTELSEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666667777776666664
No 146
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=24.53 E-value=1.7e+02 Score=20.01 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHH-----HHHHHHHHHHH
Q psy8735 22 EAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKE-----YNKRKRMCTEM 82 (115)
Q Consensus 22 el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~-----w~kRKRi~~di 82 (115)
+|.+.|..+......|...|..|..++ .+.. .|..+|+++... +..-|+=|.-+
T Consensus 63 ~Lhaev~~v~~~F~~Ld~~L~~l~~~s-----~e~~--~i~~EY~r~k~~K~dp~y~ekK~Rc~yL 121 (140)
T 1xaw_A 63 SLQSVLDEINKELSRLDKELDDYREES-----EEYM--AAADEYNRLKQVKGSADYKSKKNHCKQL 121 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTS-----HHHH--HHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC-----HHHH--HHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 455666777777777777777765443 4556 677888886542 44444455544
No 147
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=24.17 E-value=47 Score=23.34 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCcCcHHHHHHHhcc
Q psy8735 80 TEMLEAILENYPKSKKILLEEVGI 103 (115)
Q Consensus 80 ~di~d~I~E~~p~~kk~L~EelGi 103 (115)
..++.++++.++.+..+|++.+|-
T Consensus 49 ~~lv~a~s~~~g~~~~~ll~~fG~ 72 (188)
T 3sj5_A 49 RRIFAKVSEKTGKNVNEIWREVGR 72 (188)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHH
Confidence 467788888888888888888884
No 148
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.11 E-value=88 Score=16.46 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
.++...+++|=.++..++..+..|++
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 46777777787888888877777764
No 149
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=23.96 E-value=29 Score=22.49 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=16.0
Q ss_pred hcCcCcHHHHHHHhcccccc
Q psy8735 88 ENYPKSKKILLEEVGIETDE 107 (115)
Q Consensus 88 E~~p~~kk~L~EelGiEtDe 107 (115)
+..|...+.+++++||+.+.
T Consensus 82 d~iP~~ak~~m~~~Gi~~~~ 101 (104)
T 1cmb_A 82 DEIPEAAKEIMREMGINPET 101 (104)
T ss_dssp SCSCHHHHHHHHHTTCCTTS
T ss_pred ccchHHHHHHHHHhCCCccc
Confidence 45666778999999999775
No 150
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=23.86 E-value=1.3e+02 Score=18.43 Aligned_cols=28 Identities=14% Similarity=0.079 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 19 TEAEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 19 t~~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
+.++|......+......+...|..|++
T Consensus 12 ~~~~l~~~a~~~~~~~~~i~~~l~~L~~ 39 (103)
T 4i0x_B 12 DLDHIEQVTSRARGFKEFVTENLDQLES 39 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666677777777777766654
No 151
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=23.58 E-value=1.4e+02 Score=21.81 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHhhhcC
Q psy8735 20 EAEAKQKKAELQA---------ELEEKKSKLEKLSRNV 48 (115)
Q Consensus 20 ~~el~~~i~~L~~---------e~~~l~~rL~~l~~~~ 48 (115)
.+++...+++++. +.++|++||.+|.+|.
T Consensus 161 ~~~I~~Rv~qIr~qie~t~S~ydkEKLqERLAKLsGGV 198 (201)
T 3osx_A 161 EGAIAARVTQIRQQIEESTSDYDREKLQERVAKLAGGV 198 (201)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCC
Confidence 3444555555554 3466888888887653
No 152
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.29 E-value=1.2e+02 Score=24.36 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEK 43 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~ 43 (115)
+++..+..+|..+++.+++++..
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~ 94 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEE 94 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 153
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.27 E-value=1.1e+02 Score=17.27 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l 44 (115)
+-+...+..|++++..++..|..-
T Consensus 8 efAERsV~KLek~ID~LEdeL~~e 31 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQ 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667888888888888877654
No 154
>2hfi_A Hypothetical protein YPPE; YPPE_bacsu, GFT structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus subtilis} SCOP: a.24.26.1 PDB: 2im8_A
Probab=23.16 E-value=1.8e+02 Score=19.62 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC------CCCCh--hhhcHHhHHHHHHHHHHHHHH
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSRNV------NVISE--GEVDKKTITDTKEKMVKEYNK 74 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~~~------~~Vs~--ee~~~~~v~~~~~k~~~~w~k 74 (115)
.+|...+.+|-..+.++..+....+..+ ..|-| +... .+..+|..+...|.+
T Consensus 4 ~~L~~lteqLi~~~~e~~~~y~~~ke~~~e~DF~~eVKPf~d~vd--~~l~~w~~~a~~~I~ 63 (131)
T 2hfi_A 4 QTLLEMTEQMIEVAEKGADRYQEGKNSNHSYDFFETIKPAVEEND--ELAARWAEGALELIK 63 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSTTHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHH--HHHHHHHHHHHHHHH
Confidence 4588889999999999999999886433 33434 5566 899999999999997
No 155
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=23.09 E-value=1.3e+02 Score=18.08 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 22 EAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 22 el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
+|...+..-..+|.+++..|.++++
T Consensus 29 eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 29 ELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566677777788877765
No 156
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=22.77 E-value=30 Score=26.86 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
..|+..+..++.++..|+.++..|.
T Consensus 21 ~~L~~~l~~~~~ki~~L~~~i~~l~ 45 (319)
T 1fzc_C 21 RYLQEIYNSNNQKIVNLKEKVAQLE 45 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666665554
No 157
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.58 E-value=1.3e+02 Score=23.78 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 3 DKEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEK 43 (115)
Q Consensus 3 ~~~~l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~ 43 (115)
+...|+.||..|.... .++...+.++..++..+.++|..
T Consensus 4 ~~~~l~~el~~~~~~~--~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 4 MHAALSTEVVHLRQRT--EELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
No 158
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=22.51 E-value=2e+02 Score=19.94 Aligned_cols=41 Identities=22% Similarity=0.402 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHccCCHHHHH-----HHHHHHHHHHHHHHHHHHHh
Q psy8735 4 KEKVKSKLKQLSQQMTEAEAK-----QKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 4 ~~~l~seL~~L~s~lt~~el~-----~~i~~L~~e~~~l~~rL~~l 44 (115)
+..|+.+|+.....+-.=+.. .....++.++..+..+|...
T Consensus 44 ~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEA 89 (155)
T 2efr_A 44 SAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 89 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666655544433332 23344666666666666655
No 159
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=22.44 E-value=81 Score=17.92 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhhhc
Q psy8735 33 ELEEKKSKLEKLSRN 47 (115)
Q Consensus 33 e~~~l~~rL~~l~~~ 47 (115)
.+..++.+|+.+++|
T Consensus 33 Rl~ql~~~Leel~~g 47 (49)
T 2xus_A 33 RLSQLRLRLEEVGAE 47 (49)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcc
Confidence 445555566665543
No 160
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.42 E-value=1.3e+02 Score=17.98 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHH
Q psy8735 18 MTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKR 77 (115)
Q Consensus 18 lt~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKR 77 (115)
+|.+||..++.+|..+.-.|.-+... |..+-.|..+. .+-+.-.+....-+.|..
T Consensus 9 ~s~~EL~~~L~elk~ELf~LR~q~at---gq~l~n~~~ir--~vRr~IARi~Tvl~er~~ 63 (72)
T 3j21_W 9 MSIEEIDAKIRELRLQLAKERGLLTM---GTSLENPMVIR--NLRRDIARLLTIKKEKLR 63 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH---CCSSCCSHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCcHHHH--HHHHHHHHHHHHHHHHHH
Confidence 45666666666555555444332221 33377888888 777777777766665543
No 161
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.36 E-value=1.2e+02 Score=17.22 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
...+...|.+|+..|.+++..+..|+
T Consensus 13 n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 13 NIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 45567888899999988887766654
No 162
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.32 E-value=1.5e+02 Score=18.54 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l 44 (115)
..|+.+|.+|+.++..|..-|..+
T Consensus 53 ~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 53 ERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 344455555555555555444443
No 163
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.18 E-value=98 Score=18.57 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
..+...|..|+.++..|...++.|+.
T Consensus 53 ~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 53 DKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567789999999999999988864
No 164
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=22.17 E-value=1.8e+02 Score=19.43 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHH
Q psy8735 18 MTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRK 76 (115)
Q Consensus 18 lt~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRK 76 (115)
+|.+||..++.+|..+.-.|.-+.. .|+..-.|..+. .+-+.-.+....-+.|.
T Consensus 13 ~s~eEL~~~L~eLK~ELf~LRfq~a---tggqlen~~rIr--~vRRdIARi~Tvl~er~ 66 (124)
T 4a17_U 13 QTEEQLVGELGKLQTELSQLRIAKI---AGGTANKLGRIG--IVRKAIAKYLTIINEKR 66 (124)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH---hcCccCCcHHHH--HHHHHHHHHHHHHHHHH
Confidence 3455555555554444443332221 143556677777 66666666655555443
No 165
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=22.16 E-value=1.4e+02 Score=18.07 Aligned_cols=24 Identities=21% Similarity=0.007 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 22 EAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 22 el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
.....|..|+.++..|......|+
T Consensus 47 ~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 47 KAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666654
No 166
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.12 E-value=1.4e+02 Score=21.64 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8735 4 KEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSR 46 (115)
Q Consensus 4 ~~~l~seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~l~~ 46 (115)
|+.|..|...|+.. +.....+++.|+.+|..++.
T Consensus 22 V~~L~~En~~L~~q---------l~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 22 VANLVNENFVLSEK---------LDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHh
Confidence 44455555444433 33445555555555555553
No 167
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=21.93 E-value=97 Score=20.12 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=22.3
Q ss_pred HHHccCCHHHHH-----HHHHHHHHHHHHHHHHHHHhh
Q psy8735 13 QLSQQMTEAEAK-----QKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 13 ~L~s~lt~~el~-----~~i~~L~~e~~~l~~rL~~l~ 45 (115)
+|..+|..+... ..+.+|+.+|..+..+|...+
T Consensus 50 tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 50 TLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333 458888889999998888774
No 168
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.73 E-value=1.4e+02 Score=19.99 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
.+++.+|..|..++....+.++.|+
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554
No 169
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=21.69 E-value=94 Score=20.66 Aligned_cols=22 Identities=0% Similarity=0.158 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8735 65 KEKMVKEYNKRKRMCTEMLEAI 86 (115)
Q Consensus 65 ~~k~~~~w~kRKRi~~di~d~I 86 (115)
..+....|.+.-.=|++++-.+
T Consensus 20 ~~RLKevF~~ks~eFReav~~L 41 (123)
T 4dzo_A 20 NQRLKEVFQTKIQEFRKACYTL 41 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 170
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=21.53 E-value=57 Score=20.24 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=10.1
Q ss_pred CchHHHHHHHHHHHHccC
Q psy8735 1 MDDKEKVKSKLKQLSQQM 18 (115)
Q Consensus 1 ~~~~~~l~seL~~L~s~l 18 (115)
|.++..++.+++.|++.|
T Consensus 1 ~~ev~~lkeei~~L~~~P 18 (85)
T 3h43_A 1 MKENEILRRELDRMRVPP 18 (85)
T ss_dssp CHHHHHHHHHHHHHHSCC
T ss_pred CcHHHHHHHHHHHhcCCC
Confidence 445555566666555554
No 171
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=21.48 E-value=1.2e+02 Score=20.32 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=17.6
Q ss_pred HHHHHHHHHH-hhhcCCCCChhhhcHHhHHHHHH
Q psy8735 34 LEEKKSKLEK-LSRNVNVISEGEVDKKTITDTKE 66 (115)
Q Consensus 34 ~~~l~~rL~~-l~~~~~~Vs~ee~~~~~v~~~~~ 66 (115)
++++..+.-+ |......+|++++. +-.+.|.
T Consensus 35 mKel~~kyP~WLe~nk~~l~~Ed~~--RY~kQ~~ 66 (126)
T 2wl8_A 35 LKEITEKYPEWLQSHRESLPPEQFE--KYQEQHS 66 (126)
T ss_dssp HHHHHTTHHHHHHHHGGGSCHHHHH--HHHHHHH
T ss_pred HHHHHHHhhHHHHhCcccCCHHHHH--HHHHHHH
Confidence 3444444444 34445567888888 5555543
No 172
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=21.36 E-value=1.3e+02 Score=18.66 Aligned_cols=27 Identities=7% Similarity=0.236 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 19 TEAEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 19 t~~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
+.-+|..+|..|+.++..|...++.+.
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~ 47 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQ 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345677777777777777666666653
No 173
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.31 E-value=2.1e+02 Score=19.83 Aligned_cols=52 Identities=12% Similarity=0.328 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhh-----hcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy8735 31 QAELEEKKSKLEKLS-----RNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEM 82 (115)
Q Consensus 31 ~~e~~~l~~rL~~l~-----~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di 82 (115)
+.+...++.-|+.|. .++.+|..+-+.+..++.........-.....+...+
T Consensus 78 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666664 2556777666664455555555555555544444433
No 174
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.24 E-value=1.2e+02 Score=17.13 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy8735 33 ELEEKKSKL 41 (115)
Q Consensus 33 e~~~l~~rL 41 (115)
++..|.+.|
T Consensus 38 el~~Lkeel 46 (51)
T 3m91_A 38 QLLALREEV 46 (51)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 175
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=21.19 E-value=1.6e+02 Score=19.12 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=19.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 16 QQMTEAEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 16 s~lt~~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
..++..++.........++..+..++..|.
T Consensus 80 ~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le 109 (117)
T 3kin_B 80 LELTAEEWKKKYEKEKEKNKALKSVIQHLE 109 (117)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766666666666666554
No 176
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=21.17 E-value=1.1e+02 Score=19.77 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=33.2
Q ss_pred CChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcH
Q psy8735 51 ISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYPKSK 94 (115)
Q Consensus 51 Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E~~p~~k 94 (115)
.|++++. .|...|......+..+..+...++..+.+.+|..+
T Consensus 2 cs~~~~~--~V~~sw~~v~~~~~~~~~~g~~~~~~lF~~~P~~k 43 (140)
T 1x9f_D 2 CLVTESL--KVKLQWASAFGHAHERVAFGLELWRDIIDDHPEIK 43 (140)
T ss_dssp CCHHHHH--HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCHHHHH--HHHHHHHHHHcccccHHHHHHHHHHHHHHhChhHH
Confidence 4788888 88888877765555578889999999999999744
No 177
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=21.08 E-value=2.1e+02 Score=19.67 Aligned_cols=29 Identities=28% Similarity=0.226 Sum_probs=21.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 16 QQMTEAEAKQKKAELQAELEEKKSKLEKL 44 (115)
Q Consensus 16 s~lt~~el~~~i~~L~~e~~~l~~rL~~l 44 (115)
+++..+|+-..-+.|+..+.++..|+..-
T Consensus 2 ~~MKLAEAL~lRadl~kri~qL~~ri~~n 30 (154)
T 3kdq_A 2 NAMYLAEALAQRVEAQRRYSELNQLLLDV 30 (154)
T ss_dssp -CCBHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677777777777777787777777665
No 178
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=21.00 E-value=1.3e+02 Score=20.94 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8735 21 AEAKQKKAELQAELEEKKSKLEKLS 45 (115)
Q Consensus 21 ~el~~~i~~L~~e~~~l~~rL~~l~ 45 (115)
......|..|+.++..++.++..+.
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777777777777777764
No 179
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=20.88 E-value=62 Score=21.32 Aligned_cols=44 Identities=7% Similarity=0.138 Sum_probs=35.3
Q ss_pred CCCChhhhcHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCcCcH
Q psy8735 49 NVISEGEVDKKTITDTKEKMVKEY--NKRKRMCTEMLEAILENYPKSK 94 (115)
Q Consensus 49 ~~Vs~ee~~~~~v~~~~~k~~~~w--~kRKRi~~di~d~I~E~~p~~k 94 (115)
...|++++. .|...|....... ..|..+...++..+.+.+|..+
T Consensus 2 ~~~s~~~~~--~v~~sw~~v~~~~~~~~~~~~g~~~y~rlF~~~P~~k 47 (149)
T 1yhu_D 2 ASCTTEDRR--EMQLMWGNVWSAQFTGRRIAIAQAVFKDLFANVPDAV 47 (149)
T ss_dssp CCCCHHHHH--HHHHHHHHHCCSSCSHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCHHHHH--HHHHHHHHHHcccchhHHHHHHHHHHHHHHHHCHHHH
Confidence 457889999 9999998876554 4578889999999999999744
No 180
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=20.54 E-value=89 Score=18.18 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=19.2
Q ss_pred HHHHHHHhcCcCcHHHHHHHhcccc
Q psy8735 81 EMLEAILENYPKSKKILLEEVGIET 105 (115)
Q Consensus 81 di~d~I~E~~p~~kk~L~EelGiEt 105 (115)
.|+..+.++-|.+..+|.+.+|+..
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~ 28 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTD 28 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCH
Confidence 4666666766778899999999854
No 181
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=20.40 E-value=48 Score=21.41 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=42.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8735 9 SKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILE 88 (115)
Q Consensus 9 seL~~L~s~lt~~el~~~i~~L~~e~~~l~~rL~~l~~~~~~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E 88 (115)
.+|+.+.+.+-..+++.-..+++.+.. .+...-| .+-=.|..+.. ..++-|-|-+++..|++
T Consensus 10 veLrkfKgkvd~~~v~~IL~eiE~~~r----------ksnni~t-------S~If~Yanh~~-~V~knk~fy~li~~Ile 71 (99)
T 2kjg_A 10 VKLRQFKGKVNFNLVMQILDEIELDLR----------GSDNIKT-------SIIYVYSSHLD-EIRKNKEFYDMIAEILQ 71 (99)
T ss_dssp HHHHHHTCCSCHHHHHHHHHHHHHHHH----------HSSCHHH-------HHHHHHHHTHH-HHHHTHHHHHHHHHHHH
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHh----------cCCchhh-------HHHHHHHHHHH-HHHhhHHHHHHHHHHHH
Confidence 467888888888887777666665442 2222211 22223433333 35677889999999999
Q ss_pred cCcC
Q psy8735 89 NYPK 92 (115)
Q Consensus 89 ~~p~ 92 (115)
-|.+
T Consensus 72 kYs~ 75 (99)
T 2kjg_A 72 RYYK 75 (99)
T ss_dssp HHHT
T ss_pred HhCc
Confidence 9876
No 182
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=20.37 E-value=1.3e+02 Score=21.02 Aligned_cols=59 Identities=10% Similarity=0.173 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCC---h---hhhcHHhHHHHHHHHHHHHHHHHHHHH
Q psy8735 20 EAEAKQKKAELQAELEEKKSKLEKLSRNV-NVIS---E---GEVDKKTITDTKEKMVKEYNKRKRMCT 80 (115)
Q Consensus 20 ~~el~~~i~~L~~e~~~l~~rL~~l~~~~-~~Vs---~---ee~~~~~v~~~~~k~~~~w~kRKRi~~ 80 (115)
...+...-..++.++.....++..+...+ ...+ + +-.. .+...|......+..|++--.
T Consensus 55 v~~ll~kh~~~e~ei~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~--~l~~~~~~L~~~~~~R~~~Le 120 (224)
T 2iak_A 55 VESHLENHKNVHRAIEEFESSLKEAKISEIQMTAPLKLSYTDKLH--RLESQYAKLLNTSRNQERHLD 120 (224)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGCCTTHHHHHHHHHH--HHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 44455555667778888888887775322 2222 1 2245 778888888888888887654
No 183
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP: a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A* 1dm1_A*
Probab=20.27 E-value=1.4e+02 Score=19.28 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=32.7
Q ss_pred CCChhhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcH
Q psy8735 50 VISEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYPKSK 94 (115)
Q Consensus 50 ~Vs~ee~~~~~v~~~~~k~~~~w~kRKRi~~di~d~I~E~~p~~k 94 (115)
.+|++++. .|...|..... ....+..+++..+.+.+|..+
T Consensus 2 ~Lt~~~~~--~v~~sw~~v~~---~~~~~g~~~~~rlF~~~P~~k 41 (147)
T 1mba_A 2 SLSAAEAD--LAGKSWAPVFA---NKNANGLDFLVALFEKFPDSA 41 (147)
T ss_dssp CCCHHHHH--HHHHHHHHHHH---THHHHHHHHHHHHHHHCGGGG
T ss_pred CCCHHHHH--HHHHHHHHHHh---cHHHhHHHHHHHHHHhCchHH
Confidence 47889999 99998877654 467899999999999999744
No 184
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=20.18 E-value=86 Score=17.71 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q psy8735 30 LQAELEEKKSKLE 42 (115)
Q Consensus 30 L~~e~~~l~~rL~ 42 (115)
|..++..++..+.
T Consensus 32 L~~ei~~lE~ei~ 44 (50)
T 2a26_A 32 LTAEKSKIETEIK 44 (50)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
Done!