RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8735
(115 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.2 bits (71), Expect = 0.055
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 12 KQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKE 71
++L + EA + ++ +L LE K +L++ I E + K++ + +
Sbjct: 904 RELKKLKIEARSVERYKKLHIGLENKIMQLQRK------IDEQNKEYKSLLEKMNNLEIT 957
Query: 72 YNKRKRMCTEMLEAILENYPKSKKILLEEVGIETDEMVSMEK 113
Y+ +E L + K V +E+ + K
Sbjct: 958 YSTETEKLRSDVER-LRMSEEEAKNATNRVLSLQEEIAKLRK 998
Score = 28.5 bits (64), Expect = 0.55
Identities = 8/43 (18%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 3 DKEKVKSKLKQLSQQMTEAEAKQKKAE---LQAELEEKKSKLE 42
+KE++ ++ ++++TE K+ E L+ +L +++ + +
Sbjct: 1038 EKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 28.2 bits (63), Expect = 0.56
Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 2 DDKEKVKSKLKQLSQQMTEAEA-----KQKKAELQAELEEKKSKLEKLSRNVNVISEGEV 56
+ EK++S +++L EA+ LQ E+ + + +L + I E
Sbjct: 960 TETEKLRSDVERLRMSEEEAKNATNRVLS----LQEEIAKLRKELHQTQTEKKTIEEWAD 1015
Query: 57 DKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYPKSKKILLEEVGIETDEMVSME 112
K T+ +KE N + E L + + K +E+ +E + + ++
Sbjct: 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELD 1071
Score = 27.8 bits (62), Expect = 0.78
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 3/111 (2%)
Query: 2 DDKEKVKSKLKQLSQQMTEAEAKQKKAE--LQAELEEKKSKLEKLSRNVNVISEGEVDKK 59
+ + + K+ L + K + L+ EE K+ ++ I++ +
Sbjct: 942 KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001
Query: 60 TITDTKEKMVKEYNKRKRMCTEMLEAILENYPKSKKILLEEVGIETDEMVS 110
K+ + + +K K E L + L+ K EE+ +
Sbjct: 1002 QTQTEKKTIEEWADKYKHET-EQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051
Score = 25.8 bits (57), Expect = 4.0
Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 15/121 (12%)
Query: 3 DKEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVN--------VISEG 54
+ + + K+L + + K +LQ +++E+ + + L +N +
Sbjct: 911 IEARSVERYKKLHIGL-----ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965
Query: 55 EVDKKTITDTKEKMVKEYNKRKRMCTEM--LEAILENYPKSKKILLEEVGIETDEMVSME 112
D + + ++E+ N+ + E+ L L KK + E E +
Sbjct: 966 RSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLV 1025
Query: 113 K 113
Sbjct: 1026 S 1026
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 30.4 bits (69), Expect = 0.090
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 9/60 (15%)
Query: 57 DKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYPKSK---------KILLEEVGIETDE 107
DKK + + K +R++ L+ + + LL E +
Sbjct: 319 DKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEM 378
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 30.3 bits (68), Expect = 0.14
Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 19/126 (15%)
Query: 1 MDDKEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKT 60
+++ + LK+L + + + +LQ L +K +L+ + N + V +
Sbjct: 1916 EEEQLHLNIGLKKL------RDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ 1969
Query: 61 ITDTKEKMVKEY-----------NKRKRMCTEMLEAILENYPKSKKI--LLEEVGIETDE 107
+ K+K +E +K LE P +++ L +
Sbjct: 1970 AAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLK 2029
Query: 108 MVSMEK 113
+
Sbjct: 2030 QDEIVA 2035
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 29.6 bits (67), Expect = 0.20
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 57 DKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYPKSK---------KILLEEVGIETDE 107
D+K + + + KR + T LE + K+ + LL E +++
Sbjct: 314 DEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEM 373
>3nra_A Aspartate aminotransferase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Length = 407
Score = 29.5 bits (67), Expect = 0.22
Identities = 2/24 (8%), Positives = 6/24 (25%)
Query: 63 DTKEKMVKEYNKRKRMCTEMLEAI 86
E + + + +L
Sbjct: 303 GWMEDRIARHQAIRDELLHVLRGC 326
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting),
transit peptide, F1FO ATP synthase, ATP phosphorylase;
3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Length = 168
Score = 28.4 bits (63), Expect = 0.41
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 3 DKEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLE 42
D K+ L++ ++ A + +AE+Q +E ++ ++
Sbjct: 126 DLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVK 165
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator
protein; C-DI-GMP, ggdef, leucine zipper, signaling
protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1}
PDB: 3i5b_A*
Length = 206
Score = 28.3 bits (64), Expect = 0.44
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 10 KLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSR 46
++KQL ++ E LE + ++L+KL
Sbjct: 1 RMKQLEDKVEELL------SKNYHLENEVARLKKLVN 31
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.90A {Silicibacter pomeroyi dss-3}
Length = 391
Score = 28.3 bits (64), Expect = 0.55
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 66 EKMVKEYNKRKRMCTEMLEAI 86
+ + Y +++ E L
Sbjct: 282 QANLDVYKANRKLMLERLPKA 302
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS
protein structure initiative, joint center for
structural G transferase; HET: PLP; 1.90A {Thermotoga
maritima} SCOP: c.67.1.1
Length = 389
Score = 28.3 bits (64), Expect = 0.60
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 61 ITDTKEKMVKEYNKRKRMCTEMLEAI 86
+ MV+ + +RK E L+ +
Sbjct: 291 LEVDNSYMVQTFKERKNFVVERLKKM 316
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature
dependence O substrate recognition; HET: PLP; 1.80A
{Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A*
1dju_A*
Length = 389
Score = 27.8 bits (63), Expect = 0.63
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 66 EKMVKEYNKRKRMCTEMLEAI 86
E+M KEY++R+++ + L +
Sbjct: 288 EEMRKEYDRRRKLVWKRLNEM 308
>3b9o_A Alkane monoxygenase; LADA, alkane hydroxylase, monooxygenase,
plasmid, oxidoreductase; HET: FMN; 1.90A {Geobacillus
thermodenitrificans} PDB: 3b9n_A*
Length = 440
Score = 28.0 bits (63), Expect = 0.63
Identities = 6/32 (18%), Positives = 8/32 (25%), Gaps = 1/32 (3%)
Query: 19 TEAEAKQKKAELQAELEEKKSKLEKLSRNVNV 50
T EA +K Q + L
Sbjct: 288 THDEAMEKLNSFQKYWSLEGH-LAHYGGGTGY 318
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 27.9 bits (63), Expect = 0.68
Identities = 5/21 (23%), Positives = 14/21 (66%)
Query: 66 EKMVKEYNKRKRMCTEMLEAI 86
M+KE+++R+R+ + ++
Sbjct: 276 NSMIKEFDRRRRLVLKYVKDF 296
>1z9b_A Translation initiation factor IF-2; protein synthesis translation
intiation IF2 FMet-tRNA structure; NMR {Geobacillus
stearothermophilus}
Length = 135
Score = 27.2 bits (61), Expect = 0.76
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 4 KEKVKSKLKQLSQQMTEAEAKQ----KKAELQAELEEKKSKLEKLSRN---VNVISEG 54
K + L L +Q+ + E K+ KA++Q +E + L+K+ V +I
Sbjct: 20 SVKTRVSLDDLFEQIKQGEMKELNLIVKADVQGSVEALVAALQKIDVEGVRVKIIHAA 77
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 27.9 bits (63), Expect = 0.77
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 66 EKMVKEYNKRKRMCTEMLEAI 86
+ + + Y +R + LE
Sbjct: 297 DFVRETYRERVETVLKKLEEH 317
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 27.7 bits (62), Expect = 0.81
Identities = 13/115 (11%), Positives = 35/115 (30%), Gaps = 8/115 (6%)
Query: 1 MDDKEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKT 60
+++ KS ++ A Q K + + + LE S + + ++ +
Sbjct: 898 LENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELN 957
Query: 61 ITDTKEKMVKEYNKRKRMCTEMLEAILENYPKSKKILLEEVGIETDEMVSMEKLQ 115
E ++ + T + + + E + + +E L
Sbjct: 958 YNGVPELTERKDTFFAQQWTGVKSSAET--------YKNTLLAELERLQKIEDLH 1004
>3sdo_A Nitrilotriacetate monooxygenase; seattle structural genomics center
for infectious disease, S oxidoreductase; 2.00A
{Burkholderia pseudomallei}
Length = 453
Score = 27.6 bits (62), Expect = 0.83
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 19 TEAEAKQKKAELQAELEEKKSKLEKLSRNVNVI 51
T+ EA K +++ L +++ L LS
Sbjct: 280 TQQEADDKYRQVRDLLSPREA-LAYLSHFFQQH 311
>1tvl_A Protein YTNJ; beta-alpha barrel, structural genomics, PSI, protein
structu initiative, NEW YORK SGX research center for
structural GEN nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.1.16.4 PDB: 1yw1_A*
Length = 454
Score = 27.6 bits (62), Expect = 0.93
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 19 TEAEAKQKKAELQA 32
TE EA++K E
Sbjct: 280 TEEEAEKKYREFAE 293
>3tef_A VCTP, iron(III) ABC transporter, periplasmic iron-compo binding
protein; siderophore-binding protein, transport protein;
1.70A {Vibrio cholerae}
Length = 292
Score = 27.4 bits (61), Expect = 0.95
Identities = 3/32 (9%), Positives = 13/32 (40%)
Query: 20 EAEAKQKKAELQAELEEKKSKLEKLSRNVNVI 51
E + K ++ A+ + ++ + ++
Sbjct: 131 EPAVEAKIEQVDAQFKSIMQYNQQHKSDAMLV 162
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A
{Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J
1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Length = 138
Score = 26.9 bits (60), Expect = 1.2
Identities = 6/40 (15%), Positives = 18/40 (45%)
Query: 3 DKEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLE 42
D+ + ++ + ++ + A+ AEL + ++L
Sbjct: 90 DEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLR 129
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.1 bits (60), Expect = 1.5
Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 4/109 (3%)
Query: 1 MDDKEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEK-LSRNVNVISEGEVDKK 59
+ K+K+K + + ++ K++K+ + ELE+ K KLE S I+E +
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKS--RQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Query: 60 TITDTKEKMVKEYNKRKRMCTEMLEAILENYPKSKKILLEEVGIETDEM 108
+ K +E + E + N K + L + +++
Sbjct: 1085 ELKAQLAKKEEE-LQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132
Score = 26.0 bits (57), Expect = 3.5
Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 4 KEKVKSKLKQLSQQMTEAEAKQKKAE------------LQAELEEKKSKLEKLSRNVNVI 51
K+K++ ++ L +Q+ E EA ++K + ++ ++ + + KL++ ++
Sbjct: 950 KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009
Query: 52 SEGEVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYPKSKKILLE 99
E D T +E+ K K K M+ + K +K E
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1057
Score = 25.2 bits (55), Expect = 6.1
Identities = 13/90 (14%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 5 EKVKSKLKQLSQQMTEAEAKQKKAE-----LQAELEEKKSKLEKLSRNVNVISEGEVDKK 59
++++++++ ++ + +A++KK + L+ +LEE+++ +KL +
Sbjct: 930 HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKME 989
Query: 60 TITDTKEKMVKEYNKRKRMCTEMLEAILEN 89
E + K +++ E + + N
Sbjct: 990 DDILIMEDQNNKLTKERKLLEERVSDLTTN 1019
Score = 25.2 bits (55), Expect = 6.5
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 5 EKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDT 64
++ L+ +AE ++K +L ELE K++LE ++ E+ D
Sbjct: 1126 SDLQEDLESEKAARNKAE--KQKRDLSEELEALKTELEDTLDTTA--TQQELRGSDYKDD 1181
Query: 65 KEK 67
+K
Sbjct: 1182 DDK 1184
>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB:
1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*
Length = 146
Score = 26.4 bits (58), Expect = 1.7
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 3 DKEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLE 42
D K+ L++ ++ A + +AE+Q +E ++ ++
Sbjct: 104 DLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVK 143
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 26.7 bits (60), Expect = 1.7
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 66 EKMVKEYNKRKRMCTEMLEAILENYPKSK 94
+ Y +R E L+ +L +
Sbjct: 283 RGYARVYRERALGMAEALKGVLS-LLPPR 310
>1efd_N Ferrichrome-binding periplasmic protein; periplasmic binding
protein-siderophore complex, FHUD complex with
gallichrome; HET: GCR; 1.90A {Escherichia coli} SCOP:
c.92.2.1 PDB: 1k7s_N* 1k2v_N* 1esz_A*
Length = 266
Score = 26.7 bits (59), Expect = 1.8
Identities = 4/32 (12%), Positives = 13/32 (40%)
Query: 20 EAEAKQKKAELQAELEEKKSKLEKLSRNVNVI 51
++ A+ A+ + + K + K ++
Sbjct: 118 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLL 149
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 26.5 bits (59), Expect = 2.1
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 66 EKMVKEYNKRKRMCTEMLEAI 86
V EY ++ R+ +M
Sbjct: 334 RDSVIEYGRKARIMKKMFLDN 354
>3gfv_A Uncharacterized ABC transporter solute-binding protein YCLQ;
alpha-beta-sandwich, periplasmic binding protein fold
(PBP fold); 1.75A {Bacillus subtilis subsp}
Length = 303
Score = 26.6 bits (59), Expect = 2.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 20 EAEAKQKKAELQAELEEKKSKLEKLSRNVNVI 51
E + K + A + + + K EKL++N VI
Sbjct: 146 EDKVKDELANIDHSIADVKKTAEKLNKNGLVI 177
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 26.4 bits (59), Expect = 2.2
Identities = 4/62 (6%), Positives = 16/62 (25%), Gaps = 6/62 (9%)
Query: 31 QAELEEKKSKLEKLSR---NVNVISEG---EVDKKTITDTKEKMVKEYNKRKRMCTEMLE 84
L+++ + + E T + +++V + + +
Sbjct: 271 HGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIG 330
Query: 85 AI 86
Sbjct: 331 EC 332
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 26.5 bits (59), Expect = 2.3
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 2 DDKEKVKSKLKQLSQQMTEAEAKQKKAELQAELEE 36
+K K++ L + + + + KA+ A+ EE
Sbjct: 578 AEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEE 612
Score = 25.4 bits (56), Expect = 6.0
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 12 KQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKE 71
K+L++ + + + +L AE E++K+ LE+ + E E K K+
Sbjct: 527 KKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKL--- 583
Query: 72 YNKRKRMCTEMLEAILENYPKSKKILLEE 100
+ M + E + + S K
Sbjct: 584 ----QGMLNKAEEWLYDEGFDSIKAKYIA 608
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP;
1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A*
1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Length = 385
Score = 26.3 bits (59), Expect = 2.6
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 66 EKMVKEYNKRKRMCTEMLEAI 86
E + Y +R+ + E L A+
Sbjct: 290 EMAREAYRRRRDLLLEGLTAL 310
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA
NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB:
3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Length = 332
Score = 26.3 bits (59), Expect = 2.6
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 16 QQMTEAEAKQKKAELQAELEE 36
Q +T A + EL+ +L +
Sbjct: 4 QPLTLTAATTRAQELRKQLNQ 24
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
SCOP: c.67.1.1
Length = 388
Score = 26.3 bits (59), Expect = 2.7
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 66 EKMVKEYNKRKRMCTEMLEAI 86
++M+ + +R+R + L A+
Sbjct: 290 QEMLAAFAERRRYMLDALNAM 310
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A*
2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Length = 934
Score = 26.1 bits (58), Expect = 2.8
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 5 EKVKSKLKQLS-QQMTEAEAKQKKAELQAELEEKKSK 40
++ SK+KQ+ +M+E K +L+AE+ K +
Sbjct: 885 QEFLSKVKQMPFTEMSEENITIKLKQLKAEVIAKNNS 921
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 26.0 bits (58), Expect = 2.9
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 66 EKMVKEYNKRKRMCTEMLEAI 86
++ +K+ +R+ + L I
Sbjct: 303 KEYMKKLKERRDYIYKRLNEI 323
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 26.0 bits (58), Expect = 3.0
Identities = 8/48 (16%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 2 DDKEKVKSKLKQLSQQMTEAEAKQ---KKAELQAELEEKKSKLEKLSR 46
+ ++++ KL ++ ++ A Q K A L+ + + ++E +
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKK 441
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus
stearothermophilus} SCOP: d.142.2.2
Length = 318
Score = 25.9 bits (58), Expect = 3.1
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 18 MTEAEAKQKKAELQAELEE 36
M +A+++ AEL+ L
Sbjct: 1 MDRQQAERRAAELRELLNR 19
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 26.1 bits (56), Expect = 3.1
Identities = 15/103 (14%), Positives = 41/103 (39%)
Query: 9 SKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKM 68
+K + + + + + + E EEK+ K + + + ++ +K +
Sbjct: 2 AKRRPKEAEPEQVAPETPEDRDEDEREEKRRKTTRKKLESHTVPVQSRSERKAAQSKSVI 61
Query: 69 VKEYNKRKRMCTEMLEAILENYPKSKKILLEEVGIETDEMVSM 111
K + + C + L+ Y + + ++E + T E +S+
Sbjct: 62 PKINSPKCPECGQHLDDPNLKYQQHPEDAVDEPQMLTSEKLSI 104
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding,
structural genomics, NADP, PSI, protein structure
initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus}
SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Length = 278
Score = 26.1 bits (58), Expect = 3.1
Identities = 5/57 (8%), Positives = 17/57 (29%), Gaps = 7/57 (12%)
Query: 55 EVDKKTITDTKEKMVKEYNKRKRMCTEMLEAILENYPKSKKILLEEVGIETDEMVSM 111
+ +K V+++ + + + L E+ + + + M
Sbjct: 107 HASPENFEVELKKAVEKFEVERFP---RVSCSAMP----DVLALNEIAVLSRKPAKM 156
>4ew8_A Sensor protein DIVL; signal transduction, two-component
regulatory system, hiska GHKL domain, structural
genomics; 2.50A {Caulobacter crescentus}
Length = 268
Score = 26.0 bits (58), Expect = 3.4
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 16 QQMTEAEAKQKKAELQAELEEKKSKLEKLSR 46
+ + LQ+ L ++ + L + R
Sbjct: 8 HHHSSGLVPRGSHMLQSALADRSAALAEAER 38
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 25.7 bits (57), Expect = 3.9
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 26 KKAELQAELEEKKSKLEKLSRNVNVISEG---EVDKKTITDTKEKMVKEYNKRKRMCTEM 82
++ E+ + KL + I +G + +T + + +C
Sbjct: 280 RRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGA 339
Query: 83 LEAI 86
L AI
Sbjct: 340 LAAI 343
>3be6_A Putative iron compound-binding protein of ABC TRA family; open
form, closed form, group III periplasmic binding protei
structural genomics; HET: MSE; 1.82A {Escherichia coli
O157} PDB: 3be5_A*
Length = 297
Score = 25.5 bits (56), Expect = 4.2
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 20 EAEAKQKKAELQAELEEKKSKLEKLSRNVNVI 51
+++ + QA++ K+ L+ V+VI
Sbjct: 137 QSQLAILERRYQAQINALKATLDSQKITVSVI 168
>3r5t_A Ferric vibriobactin ABC transporter, periplasmic
vibriobactin-binding protein; iron-vibriobactin
transport protein; HET: VBN; 1.45A {Vibrio cholerae}
PDB: 3r5s_A*
Length = 305
Score = 25.5 bits (56), Expect = 4.3
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 20 EAEAKQKKAELQAELEEKKSKLEKLSRNVNVIS 52
E +A++ + ++ + L+ N++S
Sbjct: 137 EEQAERTIHNFEQWTKQVRDVLDLPKGRANIVS 169
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 4.6
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 9/36 (25%)
Query: 3 DKEKVK---SKLKQLSQQMTEAEAKQKKAELQAELE 35
+K+ +K + LK + A A ++A +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA------IKATME 47
>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, pcsep; 1.82A {Salmonella
enterica subsp}
Length = 110
Score = 24.9 bits (55), Expect = 4.6
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 11 LKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSR 46
L + S M + +A+ K E+ A+++ K+ ++
Sbjct: 15 LLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAK 50
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 25.6 bits (57), Expect = 4.7
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 66 EKMVKEYNKRKRMCTEMLEAI 86
+ Y + + + E L I
Sbjct: 303 TGDINAYKENRDLLYEGLTRI 323
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 25.4 bits (56), Expect = 5.1
Identities = 12/57 (21%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 3 DKEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSR--NVNVISEGEVD 57
D E+ ++++K++ + E A++++A +AEL+ + + R +S+ ++D
Sbjct: 63 DPEQAENQIKEVEATLMELRAQRQQA--EAELKLARVTYSRQQRLAQTQAVSQQDLD 117
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A
{Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2
PDB: 1v9p_A*
Length = 667
Score = 25.5 bits (57), Expect = 5.4
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 18 MTEAEAKQKKAELQAELEE 36
MT EA+++ EL+ +
Sbjct: 1 MTREEARRRINELRDLIRY 19
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 25.2 bits (56), Expect = 5.9
Identities = 2/21 (9%), Positives = 7/21 (33%)
Query: 66 EKMVKEYNKRKRMCTEMLEAI 86
E+ + + + +E
Sbjct: 275 ERNRHILEENLAILDQWIEEE 295
>2chu_A CEUE, enterochelin uptake periplasmic binding protein; iron, mecam,
SELF assembly, siderophore; HET: ECA; 2.40A
{Campylobacter jejuni} SCOP: c.92.2.4
Length = 296
Score = 25.1 bits (55), Expect = 6.1
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 20 EAEAKQKKAELQAELEEKKSKLEK 43
E EA +K ++++ E+E+ KS +++
Sbjct: 146 EKEALEKISDIKNEIEKAKSIVDE 169
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 327
Score = 25.2 bits (56), Expect = 6.6
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 8 KSKLKQLSQQMTEAEAKQK----------KAELQAELEEKKSKLEKLSRNVNVISE 53
K L + E +++ K ++Q L +K++LE + N + +E
Sbjct: 35 KGHLTLQMTTLRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAE 90
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 24.7 bits (53), Expect = 7.8
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 17/89 (19%)
Query: 13 QLSQQMTEAEAKQK-KAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTITDTKEKMVKE 71
Q + E E+ +K + E + L+E K + +EK K+
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQEL----------------DAASKVMEQEWREKAKKD 119
Query: 72 YNKRKRMCTEMLEAILENYPKSKKILLEE 100
+ + +E +E N + K ++
Sbjct: 120 LEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
>2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin
binding, triscatecholate BIND protein, iron transport;
1.55A {Bacillus subtilis} PDB: 2why_A 2xuz_A* 2xv1_A*
2phz_A
Length = 311
Score = 24.8 bits (54), Expect = 8.4
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 20 EAEAKQKKAELQAELEEKKSKLEKLSRNVNV 50
E +AK+ A+ + +L+E K+K+ +++
Sbjct: 144 EKKAKKIIADYEQDLKETKTKINDKAKDSKA 174
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299,
PSI-2, structure initiative; HET: MSE GOL; 2.23A
{Sinorhizobium meliloti}
Length = 304
Score = 24.6 bits (54), Expect = 9.3
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 3 DKEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEG 54
D+E +S +++ E ++ +LQ EL + + ++ + V + EG
Sbjct: 42 DEEAFRSDDYPYKKKLDREEYEETLTKLQIELVKVQFWMQATGKRVMAVFEG 93
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase,
transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Length = 325
Score = 24.5 bits (54), Expect = 9.4
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 41 LEKLSRNVNVISEGEV 56
+ S+ + + GE
Sbjct: 132 HQIFSKTILEVCFGEF 147
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.302 0.120 0.290
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,542,173
Number of extensions: 83671
Number of successful extensions: 616
Number of sequences better than 10.0: 1
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 283
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 51 (23.4 bits)