RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8735
         (115 letters)



>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase
           {Garden pea (Pisum sativum) [TaxId: 3888]}
          Length = 221

 Score = 25.9 bits (56), Expect = 1.3
 Identities = 6/17 (35%), Positives = 13/17 (76%)

Query: 91  PKSKKILLEEVGIETDE 107
           P +  + L+++G+ETD+
Sbjct: 153 PFTSGLNLDKIGVETDK 169


>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
           carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 363

 Score = 25.2 bits (55), Expect = 1.9
 Identities = 5/42 (11%), Positives = 19/42 (45%)

Query: 3   DKEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKL 44
            KE    +++ + + + +        E++ E+   K ++ ++
Sbjct: 322 SKEFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRISQM 363


>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 223

 Score = 25.2 bits (54), Expect = 2.2
 Identities = 5/17 (29%), Positives = 11/17 (64%)

Query: 91  PKSKKILLEEVGIETDE 107
           P + ++ LE++GI+   
Sbjct: 153 PNTDELGLEQIGIKMTN 169


>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 23.8 bits (51), Expect = 7.6
 Identities = 14/110 (12%), Positives = 40/110 (36%), Gaps = 4/110 (3%)

Query: 3   DKEKVKSKLKQLSQQMTEAEAKQKKAELQAELEEKKSKLEKLSRNVNVISEGEVDKKTIT 62
           D +  K +L++++ ++ + +   +    QA  +E+ S    L   V+ + + +   + ++
Sbjct: 23  DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSS----LEAVVDTLDQMKQGLEDVS 78

Query: 63  DTKEKMVKEYNKRKRMCTEMLEAILENYPKSKKILLEEVGIETDEMVSME 112
              E  V+  ++            LE      +      G        ++
Sbjct: 79  GLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLD 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.302    0.120    0.290 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 364,897
Number of extensions: 15984
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 89
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 47 (22.1 bits)