BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8736
         (290 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O67109|Y983_AQUAE Uncharacterized protein aq_983 OS=Aquifex aeolicus (strain VF5)
           GN=aq_983 PE=4 SV=1
          Length = 292

 Score = 33.9 bits (76), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 225 NLTHVHLMKRE--PPPECDTCNCRLTVKHLLKYCNKYHNIRSPNDLYACLS 273
           NL H  L+K E  P  E  T    L  + L KY  KY   +S +D+YAC++
Sbjct: 187 NLNHTILIKEEDIPQKEPSTKAQELYFEILKKYLRKYRKEKSLHDVYACIA 237


>sp|Q65TP4|DXS_MANSM 1-deoxy-D-xylulose-5-phosphate synthase OS=Mannheimia
           succiniciproducens (strain MBEL55E) GN=dxs PE=3 SV=1
          Length = 617

 Score = 33.5 bits (75), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 39/137 (28%)

Query: 35  YASIVYSSASDSSLKVLDTV------------HHQGVRLALGAFKSSPIKSILSEAG--- 79
           ++  +YSS  DSS K+LDT+            H +GV         SPI ++  E G   
Sbjct: 196 FSGSIYSSLRDSSKKILDTMPPIKNFMKKTEEHMKGV--------ISPISTLFEELGFNY 247

Query: 80  EPPLSSR--REILTCNYLLNTLRDPRHLHFNLIKNDNVNLHQEIQIGFFELAQKF----- 132
             P+      E++     + TL+ P+ LH    K       ++  IGF  +  KF     
Sbjct: 248 IGPIDGHNIEELIATLSNMKTLKGPQFLHIRTKKGKGYTPAEQDPIGFHGVP-KFDYHTG 306

Query: 133 --------PNYKQIFTD 141
                   P Y QIF +
Sbjct: 307 QLPKSTATPTYSQIFGE 323


>sp|Q52QW2|CRTS2_ONCHC Prolycopene isomerase 2, chloroplastic OS=Oncidium hybrid cultivar
           GN=CRTISO2 PE=2 SV=1
          Length = 587

 Score = 32.3 bits (72), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 88  EILTCNYLLNTLRDPRHLHFNLIKNDNVNLHQEIQIGFFELAQKFPNYKQ 137
           E + C   L T+ DP  +HF+L  N ++ +H+E  +   EL   FP+ K+
Sbjct: 142 EAVDCK--LRTIPDPTTVHFHLPDNLSIRVHREYDMFISELVNYFPHEKE 189


>sp|Q2VEX9|CRTSO_DAUCA Prolycopene isomerase, chloroplastic OS=Daucus carota GN=CRTISO
           PE=2 SV=1
          Length = 615

 Score = 32.3 bits (72), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 96  LNTLRDPRHLHFNLIKNDNVNLHQEIQIGFFELAQKFPNYKQ 137
           +  + DP  +HF+L  N +V +H+E    F EL  KFP+ K+
Sbjct: 176 MEVIPDPSTVHFHLPSNLSVLVHREYNEFFSELTSKFPHEKE 217


>sp|Q52QW3|CRTS1_ONCHC Prolycopene isomerase 1, chloroplastic OS=Oncidium hybrid cultivar
           GN=CRTISO1 PE=2 SV=1
          Length = 587

 Score = 32.3 bits (72), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 88  EILTCNYLLNTLRDPRHLHFNLIKNDNVNLHQEIQIGFFELAQKFPNYKQ 137
           E + C   L T+ DP  +HF+L  N ++ +H+E  +   EL   FP+ K+
Sbjct: 142 EAVDCK--LRTIPDPTTVHFHLPDNLSIRVHREYDMFISELVNYFPHEKE 189


>sp|Q9M9Y8|CRTSO_ARATH Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana
           GN=CRTISO PE=2 SV=2
          Length = 595

 Score = 32.0 bits (71), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 96  LNTLRDPRHLHFNLIKNDNVNLHQEIQIGFFELAQKFPNYKQ 137
           +  + DP  +HF+L  N +V +H+E      EL  KFP+ K+
Sbjct: 156 MEVIPDPTTVHFHLPNNLSVRIHREYDDFIAELTSKFPHEKE 197


>sp|Q6KHU4|YBEY_MYCMO Endoribonuclease YbeY OS=Mycoplasma mobile (strain ATCC 43663 /
           163K / NCTC 11711) GN=ybeY PE=3 SV=1
          Length = 152

 Score = 31.6 bits (70), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 123 IGFFELAQKFPNYKQIFTDASKNEHSVSSAFC 154
           +GFF + + F NY+++   A +  HS+   FC
Sbjct: 80  LGFFHIGEIFLNYEKVILQAKEYNHSLKREFC 111


>sp|Q9H116|GZF1_HUMAN GDNF-inducible zinc finger protein 1 OS=Homo sapiens GN=GZF1 PE=1
           SV=1
          Length = 711

 Score = 31.2 bits (69), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 227 THVHLMKREPPPECDTCNCRLTVKHLLKYCNKYHNIRSP 265
           TH+ +   E P  CD C  R T  H+L Y  + H    P
Sbjct: 452 THMRIHTGEKPFVCDECGARFTQNHMLIYHKRCHTGERP 490


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,195,819
Number of Sequences: 539616
Number of extensions: 3781733
Number of successful extensions: 10316
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10298
Number of HSP's gapped (non-prelim): 20
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)