Query psy8736
Match_columns 290
No_of_seqs 179 out of 444
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 17:53:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 98.6 1.2E-07 4E-12 77.9 7.5 122 134-264 6-141 (154)
2 2kq2_A Ribonuclease H-related 98.2 8.8E-07 3E-11 72.3 4.9 119 134-270 5-133 (147)
3 3u3g_D Ribonuclease H, RNAse H 98.2 9.2E-07 3.2E-11 70.5 4.9 70 135-210 3-84 (140)
4 3hst_B Protein RV2228C/MT2287; 98.2 1.6E-06 5.4E-11 69.4 5.4 70 135-210 3-81 (141)
5 3h08_A RNH (ribonuclease H); R 98.1 2.8E-06 9.5E-11 68.9 4.4 119 134-264 3-134 (146)
6 2ehg_A Ribonuclease HI; RNAse 98.0 1.3E-05 4.5E-10 65.0 7.1 70 136-210 2-83 (149)
7 1jl1_A Ribonuclease HI; RNAse 97.9 6.2E-06 2.1E-10 67.7 4.4 119 135-264 4-133 (155)
8 1ril_A Ribonuclease H; hydrola 97.9 1E-05 3.5E-10 67.3 4.6 120 135-264 8-138 (166)
9 2e4l_A Ribonuclease HI, RNAse 97.9 8.8E-06 3E-10 67.0 4.0 119 135-264 6-135 (158)
10 3qio_A GAG-POL polyprotein; RN 97.9 3.1E-05 1.1E-09 63.3 7.1 120 133-264 10-137 (150)
11 3p1g_A Xenotropic murine leuke 97.8 2.4E-05 8.3E-10 65.0 6.5 114 135-264 23-146 (165)
12 2lsn_A Reverse transcriptase; 97.4 0.00028 9.5E-09 58.6 6.4 70 135-210 7-90 (165)
13 2zd1_A Reverse transcriptase/r 97.3 0.00031 1.1E-08 68.9 7.0 109 134-264 438-550 (557)
14 1zbf_A Ribonuclease H-related 97.3 0.00044 1.5E-08 56.0 6.2 69 134-209 10-84 (142)
15 1mu2_A HIV-2 RT; HIV-2 reverse 97.2 0.00046 1.6E-08 67.7 6.7 111 134-264 435-547 (555)
16 4htu_A Ribonuclease H, RNAse H 97.1 0.00043 1.5E-08 55.4 4.4 70 133-209 3-78 (134)
17 1rw3_A POL polyprotein; RNA an 67.0 5.3 0.00018 37.5 4.6 64 136-205 347-420 (455)
18 3dmo_A Cytidine deaminase; str 31.8 54 0.0018 25.7 4.3 37 147-183 32-72 (138)
19 2fr5_A Cytidine deaminase; tet 30.9 70 0.0024 25.2 4.9 39 146-184 35-77 (146)
20 3mpz_A Cytidine deaminase; ssg 29.7 57 0.0019 26.0 4.2 37 148-184 47-87 (150)
21 3r2n_A Cytidine deaminase; str 28.4 67 0.0023 25.1 4.4 37 148-184 32-72 (138)
22 2zd1_B P51 RT; P51/P66, hetero 28.4 85 0.0029 29.0 5.9 86 118-205 296-397 (428)
23 3alr_A Nanos protein; zinc-fin 27.0 31 0.0011 25.7 2.0 26 238-263 72-97 (106)
24 3b8f_A Putative blasticidin S 26.2 64 0.0022 25.2 3.9 42 139-184 19-64 (142)
25 2d30_A Cytidine deaminase; pur 24.7 89 0.0031 24.4 4.5 38 147-184 33-74 (141)
26 2qgp_A HNH endonuclease; Q39X4 21.4 25 0.00087 26.4 0.6 18 237-254 35-57 (112)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=98.57 E-value=1.2e-07 Score=77.91 Aligned_cols=122 Identities=13% Similarity=0.128 Sum_probs=77.0
Q ss_pred CCeEEeecCCCCCCc-----eeEEEEecCcc---ceeccCCCccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEecch
Q psy8736 134 NYKQIFTDASKNEHS-----VSSAFCCEETK---FSVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSL 205 (290)
Q Consensus 134 ~~~~iyTDgSk~~~~-----~G~av~~~~~~---~~~~l~~~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I~sDs~ 205 (290)
+.+.||||||...++ .|+++|..+.. ....++..++.+.||+.|++.||+.+.+. +..++.|++||+
T Consensus 6 ~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~-----~~~~v~i~tDS~ 80 (154)
T 2qkb_A 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQ-----NINKLVLYTNSM 80 (154)
T ss_dssp TEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHT-----TCCEEEEEESCH
T ss_pred CeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhC-----CCceEEEEECcH
Confidence 457899999976432 78888876543 34456657899999999999999999875 567899999999
Q ss_pred hhhhhhhhhh----hhhhcc--CCcccccccccccCCCCCCCCCCcccchhehhhhccchhhccC
Q psy8736 206 SALQSREQVS----LTRLRI--GHTNLTHVHLMKREPPPECDTCNCRLTVKHLLKYCNKYHNIRS 264 (290)
Q Consensus 206 saL~~r~~~~----l~rlRt--GH~~l~h~~l~~~~~~p~C~~c~~~~tv~Hil~~Cp~~~~~R~ 264 (290)
.++..-..-. -+.+++ |...-+. -|+..-. ..+. +-..++.||.-|+....|++.
T Consensus 81 ~vi~~i~~~~~~w~~~~w~~~~~~~~~n~-~l~~~i~-~l~~--~~~v~~~~V~~H~g~~~N~~A 141 (154)
T 2qkb_A 81 FTINGITNWVQGWKKNGWKTSAGKEVINK-EDFVALE-RLTQ--GMDIQWMHVPGHSGFIGNEEA 141 (154)
T ss_dssp HHHHHHHTHHHHHHTTTSBCTTSSBCTTH-HHHHHHH-HHHT--TCEEEEEECCTTSSCHHHHHH
T ss_pred HHHhhhhhhHHHHHhccccccCCCccccH-HHHHHHH-HHHc--CCceEEEEccCCCCCHhHHHH
Confidence 8776533211 011221 1111111 1111000 0111 234889999999877777665
No 2
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=98.24 E-value=8.8e-07 Score=72.27 Aligned_cols=119 Identities=11% Similarity=0.010 Sum_probs=72.0
Q ss_pred CCeEEeecCCCCCCceeEEEEecC-cc---cee-cc--CC--CccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEecc
Q psy8736 134 NYKQIFTDASKNEHSVSSAFCCEE-TK---FSV-KL--DP--RISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDS 204 (290)
Q Consensus 134 ~~~~iyTDgSk~~~~~G~av~~~~-~~---~~~-~l--~~--~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I~sDs 204 (290)
+.+.||||||...+..|+|+|..+ .. ... +. +. ..+.+.||+.|++.||+.+.+. +. ++.|++||
T Consensus 5 ~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~-----~~-~v~I~tDS 78 (147)
T 2kq2_A 5 TEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQL-----GV-KIRILHDY 78 (147)
T ss_dssp SCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHH-----TC-CCCBSSCC
T ss_pred CeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHC-----CC-eEEEEECc
Confidence 457899999998766788876643 22 122 22 22 2588999999999999998775 44 89999999
Q ss_pred hhhhhhhhhhhhhhhccCCccccc-ccccccCCCCCCCCCCcccchhehhhhccchhhccCCCChhh
Q psy8736 205 LSALQSREQVSLTRLRIGHTNLTH-VHLMKREPPPECDTCNCRLTVKHLLKYCNKYHNIRSPNDLYA 270 (290)
Q Consensus 205 ~saL~~r~~~~l~rlRtGH~~l~h-~~l~~~~~~p~C~~c~~~~tv~Hil~~Cp~~~~~R~~~~l~~ 270 (290)
.....-.. ..+++-...... .-++..-. ...++.||.-|+.+..|++.+.-.++
T Consensus 79 ~~i~~w~~----~~w~~~~~~~~~~~~l~~~l~--------~~v~~~wV~gH~g~~~Ne~AD~LA~~ 133 (147)
T 2kq2_A 79 AGIAFWAT----GEWKAKNEFTQAYAKLMNQYR--------GIYSFEKVKAHSGNEFNDYVDMKAKS 133 (147)
T ss_dssp STHHHHTT----SSSSCCHHHHHHHHCGGGGGS--------TTCCBCCCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHh----CCCccCCcchHHHHHHHHHhc--------CCeeEEEecCcCCCcchHHHHHHHHH
Confidence 64322100 011111100000 00121111 16889999999998888876333333
No 3
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=98.24 E-value=9.2e-07 Score=70.47 Aligned_cols=70 Identities=14% Similarity=0.055 Sum_probs=51.5
Q ss_pred CeEEeecCCCCCC--ceeEEEEecCcc------ceeccCCCccchHHHHHHHHHHHHHHHhhCCCCCCCC----cEEEEe
Q psy8736 135 YKQIFTDASKNEH--SVSSAFCCEETK------FSVKLDPRISICNAELISIQYAISFIISTTPLQVPTP----KFVLYS 202 (290)
Q Consensus 135 ~~~iyTDgSk~~~--~~G~av~~~~~~------~~~~l~~~~siftAE~~aI~~Al~~~~~~~~~~~~~~----~~~I~s 202 (290)
.+.||||||...+ ..|++++..+.+ ....+ ..++...||+.|++.||+.+.+. +.. ++.|++
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~-----~~~~~~~~v~i~t 76 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMF-----GDKLVDMEVEVRM 76 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGG-----GGGGTTCEEEEEE
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHc-----CCCCCCceEEEEe
Confidence 4689999998643 467776664422 11222 34789999999999999999875 334 899999
Q ss_pred cchhhhhh
Q psy8736 203 DSLSALQS 210 (290)
Q Consensus 203 Ds~saL~~ 210 (290)
||+.++..
T Consensus 77 DS~~vi~~ 84 (140)
T 3u3g_D 77 DSELIVRQ 84 (140)
T ss_dssp SCHHHHHH
T ss_pred ChHHHHHH
Confidence 99988764
No 4
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=98.19 E-value=1.6e-06 Score=69.42 Aligned_cols=70 Identities=10% Similarity=-0.002 Sum_probs=51.8
Q ss_pred CeEEeecCCCCCC--ceeEEEEecCcc-------ceeccCCCccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEecch
Q psy8736 135 YKQIFTDASKNEH--SVSSAFCCEETK-------FSVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSL 205 (290)
Q Consensus 135 ~~~iyTDgSk~~~--~~G~av~~~~~~-------~~~~l~~~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I~sDs~ 205 (290)
.+.||||||...+ ..|++++..+.. ....+ ..++...||+.|++.||+.+.+. +..++.|++||+
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~-----~~~~v~i~tDS~ 76 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKL-----GATEAAVLMDSK 76 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHH-----TCSEEEEEESCH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHC-----CCceEEEEeChH
Confidence 3679999997643 366666554321 12222 36788999999999999999986 567899999999
Q ss_pred hhhhh
Q psy8736 206 SALQS 210 (290)
Q Consensus 206 saL~~ 210 (290)
.++..
T Consensus 77 ~vv~~ 81 (141)
T 3hst_B 77 LVVEQ 81 (141)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 5
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=98.06 E-value=2.8e-06 Score=68.89 Aligned_cols=119 Identities=16% Similarity=0.058 Sum_probs=68.7
Q ss_pred CCeEEeecCCCCCC--ceeEEEEecCcc----ceeccCCCccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEecchhh
Q psy8736 134 NYKQIFTDASKNEH--SVSSAFCCEETK----FSVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSA 207 (290)
Q Consensus 134 ~~~~iyTDgSk~~~--~~G~av~~~~~~----~~~~l~~~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I~sDs~sa 207 (290)
+.+.||||||...+ ..|+|++..+.. ....+ ..++...||+.|++.||+.+.+ ..++.|++||+.+
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~-------~~~v~I~tDS~~v 74 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE-------PARVQLYSDSAYL 74 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS-------CCEEEEEESCHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc-------cCcEEEEeChHHH
Confidence 35789999997644 367776654432 12222 3577889999999999999863 3589999999987
Q ss_pred hhhhhhhhhhhhc-----c--CCcccccccccccCCCCCCCCCCcccchhehhhhccchhhccC
Q psy8736 208 LQSREQVSLTRLR-----I--GHTNLTHVHLMKREPPPECDTCNCRLTVKHLLKYCNKYHNIRS 264 (290)
Q Consensus 208 L~~r~~~~l~rlR-----t--GH~~l~h~~l~~~~~~p~C~~c~~~~tv~Hil~~Cp~~~~~R~ 264 (290)
+..-..--+.+++ + |..--+.. |+..-. ..+. .-..++.||.-|+.+..|++.
T Consensus 75 i~~i~~~w~~~W~~~~w~~~~~~~v~n~~-l~~~~~-~~~~--~~~v~~~~V~gH~g~~~N~~A 134 (146)
T 3h08_A 75 VNAMNEGWLKRWVKNGWKTAAKKPVENID-LWQEIL-KLTT--LHRVTFHKVKGHSDNPYNSRA 134 (146)
T ss_dssp HHHHHSSHHHHHHHTTCC----CCCTTHH-HHHHHH-HHHH--HSEEEEEECCC-CCSHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCccCCCCCcCCHH-HHHHHH-HHHh--hCceEEEEcCCcCCcHhHHHH
Confidence 7653320011111 1 11100111 100000 0001 124788899999888888775
No 6
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=97.99 E-value=1.3e-05 Score=64.96 Aligned_cols=70 Identities=9% Similarity=0.018 Sum_probs=51.0
Q ss_pred eEEeecCCCC--C-CceeE-EEEecC-cc--cee--ccC---CCccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEec
Q psy8736 136 KQIFTDASKN--E-HSVSS-AFCCEE-TK--FSV--KLD---PRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSD 203 (290)
Q Consensus 136 ~~iyTDgSk~--~-~~~G~-av~~~~-~~--~~~--~l~---~~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I~sD 203 (290)
+.+|||||.. + +..|+ +++..+ .. ..+ .++ ...+...||+.|++.||+.+.+. +..++.|++|
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~-----g~~~v~i~tD 76 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRL-----GISSPIIKGD 76 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHH-----TCCSCEEEES
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHc-----CCCEEEEEeC
Confidence 4799999976 2 34664 655443 22 111 222 36889999999999999999986 5678999999
Q ss_pred chhhhhh
Q psy8736 204 SLSALQS 210 (290)
Q Consensus 204 s~saL~~ 210 (290)
|+.++..
T Consensus 77 S~~vi~~ 83 (149)
T 2ehg_A 77 SQLVIKQ 83 (149)
T ss_dssp CHHHHHH
T ss_pred hHHHHHH
Confidence 9987754
No 7
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=97.95 E-value=6.2e-06 Score=67.72 Aligned_cols=119 Identities=17% Similarity=0.116 Sum_probs=70.7
Q ss_pred CeEEeecCCCCCC--ceeEEEEecCcc----ceeccCCCccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEecchhhh
Q psy8736 135 YKQIFTDASKNEH--SVSSAFCCEETK----FSVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSAL 208 (290)
Q Consensus 135 ~~~iyTDgSk~~~--~~G~av~~~~~~----~~~~l~~~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I~sDs~saL 208 (290)
.+.||||||...+ ..|+|++..+.. ....+ ...+...||+.|++.||+.+.+ ..++.|++||+.++
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~-------~~~v~I~tDS~~vi 75 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE-------HAEVILSTDSQYVR 75 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS-------CCEEEEEECCHHHH
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc-------CCcEEEEeCHHHHH
Confidence 4689999998643 367776654322 12222 3567889999999999998864 26899999999887
Q ss_pred hhhhhhh----hhhhccCCc-ccccccccccCCCCCCCCCCcccchhehhhhccchhhccC
Q psy8736 209 QSREQVS----LTRLRIGHT-NLTHVHLMKREPPPECDTCNCRLTVKHLLKYCNKYHNIRS 264 (290)
Q Consensus 209 ~~r~~~~----l~rlRtGH~-~l~h~~l~~~~~~p~C~~c~~~~tv~Hil~~Cp~~~~~R~ 264 (290)
..-..-+ -+.+++--+ ...+.-|+..-+ ..+. ....++.||.-|+.+..|++.
T Consensus 76 ~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~-~l~~--~~~v~~~wV~gH~g~~~Ne~A 133 (155)
T 1jl1_A 76 QGITQWIHNWKKRGWKTADKKPVKNVDLWQRLD-AALG--QHQIKWEWVKGHAGHPENERA 133 (155)
T ss_dssp HHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHH-HHTT--TCEEEEEECCSSTTCHHHHHH
T ss_pred HHHHHHHHHHhhcccccccCCccCCHHHHHHHH-HHHc--cCceEEEEcCCCCCCHHHHHH
Confidence 6533210 011121100 111111111000 0111 136889999999988888876
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=97.87 E-value=1e-05 Score=67.25 Aligned_cols=120 Identities=13% Similarity=-0.015 Sum_probs=69.7
Q ss_pred CeEEeecCCCCCC--ceeEEEEecCcc--ceec-cCCCccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEecchhhhh
Q psy8736 135 YKQIFTDASKNEH--SVSSAFCCEETK--FSVK-LDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSALQ 209 (290)
Q Consensus 135 ~~~iyTDgSk~~~--~~G~av~~~~~~--~~~~-l~~~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I~sDs~saL~ 209 (290)
.+.||||||...+ ..|+|+|..+.. ..+. .....+...||+.|++.||+.+.+ ..++.|++||+.++.
T Consensus 8 ~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~-------~~~v~I~tDS~~vi~ 80 (166)
T 1ril_A 8 RVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE-------PCEVDLYTDSHYLKK 80 (166)
T ss_dssp CCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCS-------CCEEEEECCCHHHHH
T ss_pred cEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhcc-------CCeEEEEeChHHHHH
Confidence 5689999998643 367777764322 1111 113577889999999999998753 248999999998775
Q ss_pred hhhh-hhh----hhhccCCcc-cccccccccCCCCCCCCCCcccchhehhhhccchhhccC
Q psy8736 210 SREQ-VSL----TRLRIGHTN-LTHVHLMKREPPPECDTCNCRLTVKHLLKYCNKYHNIRS 264 (290)
Q Consensus 210 ~r~~-~~l----~rlRtGH~~-l~h~~l~~~~~~p~C~~c~~~~tv~Hil~~Cp~~~~~R~ 264 (290)
.-.. -+- +-+++.-+. ..+.-|+..-+ ..+. ....++.||.-|+.+..|++.
T Consensus 81 ~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~-~l~~--~~~v~~~wV~gH~g~~~Ne~A 138 (166)
T 1ril_A 81 AFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALL-LAMA--PHRVRFHFVKGHTGHPENERV 138 (166)
T ss_dssp HHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHH-HHHT--TSEEECCCCCGGGSCTHHHHH
T ss_pred HHhhhHHHHHHhcccccccCCccCcHHHHHHHH-HHHh--cCeEEEEEeeCCCCchhHHHH
Confidence 4322 100 012221110 11111110000 0111 126889999999888888776
No 9
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=97.87 E-value=8.8e-06 Score=67.04 Aligned_cols=119 Identities=18% Similarity=0.085 Sum_probs=69.9
Q ss_pred CeEEeecCCCCCC--ceeEEEEecCcc----ceeccCCCccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEecchhhh
Q psy8736 135 YKQIFTDASKNEH--SVSSAFCCEETK----FSVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSAL 208 (290)
Q Consensus 135 ~~~iyTDgSk~~~--~~G~av~~~~~~----~~~~l~~~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I~sDs~saL 208 (290)
.+.||||||...+ ..|+|+|..+.. ....+ +..+...||+.|++.||+.+.+ ..++.|++||+.++
T Consensus 6 ~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~-------~~~v~I~tDS~~vi 77 (158)
T 2e4l_A 6 LIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE-------PCKIILTSDSQYMR 77 (158)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS-------CCEEEEEECCHHHH
T ss_pred eEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc-------CCeEEEEeCHHHHH
Confidence 4789999998643 367776654322 12223 3477889999999999998742 26899999999877
Q ss_pred hhhhhhh----hhhhccCCcc-cccccccccCCCCCCCCCCcccchhehhhhccchhhccC
Q psy8736 209 QSREQVS----LTRLRIGHTN-LTHVHLMKREPPPECDTCNCRLTVKHLLKYCNKYHNIRS 264 (290)
Q Consensus 209 ~~r~~~~----l~rlRtGH~~-l~h~~l~~~~~~p~C~~c~~~~tv~Hil~~Cp~~~~~R~ 264 (290)
..-..-+ -+.+++..+. ..+.-|+..-. ..+. +...++.||.-|+.+..|++.
T Consensus 78 ~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~-~l~~--~~~v~~~wV~gH~g~~~Ne~A 135 (158)
T 2e4l_A 78 QGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLD-KAAQ--LHQIDWRWVKGHAGHAENERC 135 (158)
T ss_dssp HHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHH-HHHT--TSEEEEEECCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHccccccCCCcccCHHHHHHHH-HHHc--cCcEEEEEccCCCCchhHHHH
Confidence 6532200 0112221110 11111110000 0111 136889999999988888876
No 10
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=97.85 E-value=3.1e-05 Score=63.31 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=69.3
Q ss_pred CCCeEEeecCCCCCC-c-eeEEEEecCcc-ceeccCCCccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEecchhhhh
Q psy8736 133 PNYKQIFTDASKNEH-S-VSSAFCCEETK-FSVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSALQ 209 (290)
Q Consensus 133 ~~~~~iyTDgSk~~~-~-~G~av~~~~~~-~~~~l~~~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I~sDs~saL~ 209 (290)
++.+.||||||...+ + .|++++..+.. ....+ ..++...||+.|+..||+.. ..++.|++||+.++.
T Consensus 10 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~---------~~~v~i~tDS~~v~~ 79 (150)
T 3qio_A 10 VGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS---------GLEVNIVTDSQYALG 79 (150)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS---------CSEEEEEESCHHHHH
T ss_pred CCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC---------CCcEEEEeCcHHHHH
Confidence 346899999997533 2 56666665543 23333 46888999999999999973 257999999998776
Q ss_pred hhhhhh----hhhhccCCc-ccccccccccCCCCCCCCCCcccchhehhhhccchhhccC
Q psy8736 210 SREQVS----LTRLRIGHT-NLTHVHLMKREPPPECDTCNCRLTVKHLLKYCNKYHNIRS 264 (290)
Q Consensus 210 ~r~~~~----l~rlRtGH~-~l~h~~l~~~~~~p~C~~c~~~~tv~Hil~~Cp~~~~~R~ 264 (290)
.-..-. -+-+++--+ ...+.-|+..-..-.+ -....++.||.-|+....|++.
T Consensus 80 ~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~--~~~~v~~~wV~gH~g~~~Ne~A 137 (150)
T 3qio_A 80 IITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLI--KKEKVYLAWVPAHKGIGGNEQV 137 (150)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHT--TCSEEEEEECCTTSCCHHHHHH
T ss_pred HHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHh--hcCceEEEEccCcCCChhHHHH
Confidence 532110 011111111 0001111110000001 1356889999999988888775
No 11
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=97.85 E-value=2.4e-05 Score=65.04 Aligned_cols=114 Identities=20% Similarity=0.130 Sum_probs=68.9
Q ss_pred CeEEeecCCCC--CCceeEEE--EecCccc-eeccCCCccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEecchhhhh
Q psy8736 135 YKQIFTDASKN--EHSVSSAF--CCEETKF-SVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSALQ 209 (290)
Q Consensus 135 ~~~iyTDgSk~--~~~~G~av--~~~~~~~-~~~l~~~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I~sDs~saL~ 209 (290)
.+.||||||.. .+..|+|+ +..+... ...++..++...||+.|+..||+.+ . ..++.|++||+-++.
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~-~-------~~~v~I~tDS~~vi~ 94 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA-E-------GKKLNVYTDSRYAFA 94 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT-B-------TSEEEEEECCHHHHH
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc-c-------CceEEEEEchHHHHh
Confidence 47899999985 23245554 3333222 2245677899999999999999988 2 357999999998876
Q ss_pred hhhhhhhhhhccCCcccccccccccCCCCCCCCCCcccchhehhhhcc-----chhhccC
Q psy8736 210 SREQVSLTRLRIGHTNLTHVHLMKREPPPECDTCNCRLTVKHLLKYCN-----KYHNIRS 264 (290)
Q Consensus 210 ~r~~~~l~rlRtGH~~l~h~~l~~~~~~p~C~~c~~~~tv~Hil~~Cp-----~~~~~R~ 264 (290)
.. +. + ..|..--+. -|+..-....+ -+...++.||.-|.. ...|++.
T Consensus 95 ~i-w~--~--~~g~~v~n~-dl~~~l~~~l~--~~~~v~~~wVkgH~g~~~~~~~gNe~A 146 (165)
T 3p1g_A 95 TA-HV--H--SEGREIKNK-NEILALLKALF--LPKRLSIIHCPGHQKGNSAEARGNRMA 146 (165)
T ss_dssp HH-HS--C--CCSCCCSSH-HHHHHHHHHTT--SBSEEEEEECCSSCCSCSHHHHHHHHH
T ss_pred hh-hc--c--cCCCcccCH-HHHHHHHHHHh--cCCceEEEEecCCCCCCcCcchHHHHH
Confidence 43 10 0 122111111 11110000011 245688999999887 6777765
No 12
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=97.38 E-value=0.00028 Score=58.58 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=45.9
Q ss_pred CeEEeecCCCCCC-c------eeEEEEecCcc------ceecc-CCCccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEE
Q psy8736 135 YKQIFTDASKNEH-S------VSSAFCCEETK------FSVKL-DPRISICNAELISIQYAISFIISTTPLQVPTPKFVL 200 (290)
Q Consensus 135 ~~~iyTDgSk~~~-~------~G~av~~~~~~------~~~~l-~~~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I 200 (290)
...||||||...+ + .|+++|..... ..+.. .+..+-..||..|+..|++.+.+. ..++.|
T Consensus 7 evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~------~~~v~I 80 (165)
T 2lsn_A 7 EGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI------PGPVLV 80 (165)
T ss_dssp SEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS------SSCEEE
T ss_pred eEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC------CCeEEE
Confidence 3679999997532 2 67887754321 12222 234455678888888888877653 347999
Q ss_pred Eecchhhhhh
Q psy8736 201 YSDSLSALQS 210 (290)
Q Consensus 201 ~sDs~saL~~ 210 (290)
+|||.-++..
T Consensus 81 ~TDS~Yvi~~ 90 (165)
T 2lsn_A 81 ITDSFYVAES 90 (165)
T ss_dssp EESCHHHHHH
T ss_pred EeChHHHHhh
Confidence 9999876654
No 13
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=97.31 E-value=0.00031 Score=68.94 Aligned_cols=109 Identities=13% Similarity=0.067 Sum_probs=67.1
Q ss_pred CCeEEeecCCCCCC-c-eeEEEEecCcc-ceeccCCCccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEecchhhhhh
Q psy8736 134 NYKQIFTDASKNEH-S-VSSAFCCEETK-FSVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSALQS 210 (290)
Q Consensus 134 ~~~~iyTDgSk~~~-~-~G~av~~~~~~-~~~~l~~~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I~sDs~saL~~ 210 (290)
+.+.||||||...+ | .|+|++..+.. ..... ..++...||+.|++.||+.+ ..++.|++||+-++..
T Consensus 438 ~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~---------~~~v~I~tDS~~vi~~ 507 (557)
T 2zd1_A 438 GAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS---------GLEVNIVTDSQYALGI 507 (557)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS---------CSEEEEEECCHHHHHH
T ss_pred CCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC---------CCcEEEEeChHHHHHH
Confidence 34789999997533 3 56666655433 23332 46789999999999999987 1369999999988765
Q ss_pred hhhhhhhhhccC-CcccccccccccCCCCCCCCCCcccchhehhhhccchhhccC
Q psy8736 211 REQVSLTRLRIG-HTNLTHVHLMKREPPPECDTCNCRLTVKHLLKYCNKYHNIRS 264 (290)
Q Consensus 211 r~~~~l~rlRtG-H~~l~h~~l~~~~~~p~C~~c~~~~tv~Hil~~Cp~~~~~R~ 264 (290)
-.. .... +..+-..++ .. .. .....++.||.-|+....|++.
T Consensus 508 i~~-----~~~~~~~~l~~~~~-~~----l~--~~~~v~~~wV~~H~g~~~Ne~A 550 (557)
T 2zd1_A 508 IQA-----QPDKSESELVNQII-EQ----LI--KKEKVYLAWVPAHKGIGGNEQV 550 (557)
T ss_dssp HTT-----CCSEESSHHHHHHH-HH----HH--HCSEEEEEECCSSSCCTTCCGG
T ss_pred Hhc-----CCccCCHHHHHHHH-HH----Hh--cCCCEEEEEcCCCCCChhHHHH
Confidence 321 1110 000000000 00 00 0135788899888888877765
No 14
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=97.27 E-value=0.00044 Score=55.97 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=49.1
Q ss_pred CCeEEeecCCCCC--CceeEEEEecCc-c-c--eeccCCCccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEecchhh
Q psy8736 134 NYKQIFTDASKNE--HSVSSAFCCEET-K-F--SVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSA 207 (290)
Q Consensus 134 ~~~~iyTDgSk~~--~~~G~av~~~~~-~-~--~~~l~~~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I~sDs~sa 207 (290)
....||||||... +..|.++|.... . . ...++ ..+-..||+.|++.||+.+.+. .. ++.|++||+-+
T Consensus 10 ~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~-----~~-~v~i~tDS~~v 82 (142)
T 1zbf_A 10 IWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKER-----NS-RKPIYSNSQTA 82 (142)
T ss_dssp CSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHT-----TC-CCCEEESCHHH
T ss_pred CeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhC-----CC-eEEEEEehHHH
Confidence 4568999999753 236777776532 2 1 11222 4678889999999999999875 34 79999999866
Q ss_pred hh
Q psy8736 208 LQ 209 (290)
Q Consensus 208 L~ 209 (290)
+.
T Consensus 83 i~ 84 (142)
T 1zbf_A 83 IK 84 (142)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 15
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=97.20 E-value=0.00046 Score=67.66 Aligned_cols=111 Identities=17% Similarity=0.090 Sum_probs=67.3
Q ss_pred CCeEEeecCCCCCCc--eeEEEEecCccceeccCCCccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEecchhhhhhh
Q psy8736 134 NYKQIFTDASKNEHS--VSSAFCCEETKFSVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSALQSR 211 (290)
Q Consensus 134 ~~~~iyTDgSk~~~~--~G~av~~~~~~~~~~l~~~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I~sDs~saL~~r 211 (290)
+.+.+|||||...++ .|+|++.............++...||+.|++.||+. . ..++.|++||+-++..-
T Consensus 435 ~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~TNn~aEl~A~i~aL~~---~------~~~v~I~tDS~~v~~~i 505 (555)
T 1mu2_A 435 GAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAELEAFAMALTD---S------GPKVNIIVDSQYVMGIV 505 (555)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEESSCCHHHHHHHHHHHHHHT---S------CSEEEEEESCHHHHHHH
T ss_pred CceEEEEcccccCCCCCceEEEEEEeCCEeeccCCCCCHHHHHHHHHHHHHHc---C------CCeEEEEEehHHHHHHH
Confidence 347899999976432 567766655432222234577889999999999987 1 35799999999877653
Q ss_pred hhhhhhhhccCCcccccccccccCCCCCCCCCCcccchhehhhhccchhhccC
Q psy8736 212 EQVSLTRLRIGHTNLTHVHLMKREPPPECDTCNCRLTVKHLLKYCNKYHNIRS 264 (290)
Q Consensus 212 ~~~~l~rlRtGH~~l~h~~l~~~~~~p~C~~c~~~~tv~Hil~~Cp~~~~~R~ 264 (290)
.. ++++.. .-+++... ... ..+...++.||.-|+....|++.
T Consensus 506 ~~-----~~~~~~----~~l~~~~~-~~~-~~~~~v~~~wV~~H~g~~~Ne~A 547 (555)
T 1mu2_A 506 AS-----QPTESE----SKIVNQII-EEM-IKKEAIYVAWVPAHKGIGGNQEV 547 (555)
T ss_dssp HT-----CCSEES----CHHHHHHH-HHH-HHCSEEEEEECCSSSCCTTHHHH
T ss_pred hc-----cccccc----HHHHHHHH-HHh-ccCCcEEEEEEECCCCChhHHHH
Confidence 22 222210 00110000 000 01345788899888887777664
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=97.09 E-value=0.00043 Score=55.45 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=46.8
Q ss_pred CCCeEEeecCCCC-CCc-eeE-EEEecCcc---ceeccCCCccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEecchh
Q psy8736 133 PNYKQIFTDASKN-EHS-VSS-AFCCEETK---FSVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLS 206 (290)
Q Consensus 133 ~~~~~iyTDgSk~-~~~-~G~-av~~~~~~---~~~~l~~~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I~sDs~s 206 (290)
+....|||||+.. +.| .|. +|+..+.. ....+ ..++--.||+.|++.||+.+.+. .. ++.|++||+-
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~-----~~-~v~i~tDSqy 75 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKER-----NS-RKPIYSNSQT 75 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHT-----TC-CCCEEESCHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhC-----CC-CEEEEcchHH
Confidence 3456799999975 333 566 34433222 11122 25777889999999999999874 22 3799999986
Q ss_pred hhh
Q psy8736 207 ALQ 209 (290)
Q Consensus 207 aL~ 209 (290)
++.
T Consensus 76 Vi~ 78 (134)
T 4htu_A 76 AIK 78 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=67.02 E-value=5.3 Score=37.51 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=41.5
Q ss_pred eEEeecCCCCCCceeEEEEecCcc-------ceecc---CCCccchHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEecch
Q psy8736 136 KQIFTDASKNEHSVSSAFCCEETK-------FSVKL---DPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSL 205 (290)
Q Consensus 136 ~~iyTDgSk~~~~~G~av~~~~~~-------~~~~l---~~~~siftAE~~aI~~Al~~~~~~~~~~~~~~~~~I~sDs~ 205 (290)
..+|||+|. .++|+.....+.. .+-++ ...-+++..|++||..|++.....- ....+.|++|+.
T Consensus 347 ~~l~~DAS~--~~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl----~g~~~~v~tDh~ 420 (455)
T 1rw3_A 347 FELFVDEKQ--GYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLT----MGQPLVIKAPHA 420 (455)
T ss_dssp TSCEEEEEE--CSSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGG----CSSCEEEECSSC
T ss_pred EEEEEeccC--CcceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHc----CCCcEEEEecCh
Confidence 479999985 3445433222111 11122 2345688999999999999887652 456899999985
No 18
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=31.76 E-value=54 Score=25.72 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=25.6
Q ss_pred CceeEEEEecCccceeccCCCccc----hHHHHHHHHHHHH
Q psy8736 147 HSVSSAFCCEETKFSVKLDPRISI----CNAELISIQYAIS 183 (290)
Q Consensus 147 ~~~G~av~~~~~~~~~~l~~~~si----ftAE~~aI~~Al~ 183 (290)
=.||+|+...|.+...+---+... .-||..||..|+.
T Consensus 32 F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs 72 (138)
T 3dmo_A 32 FKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALA 72 (138)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHH
Confidence 369999999988744433222222 3599999999985
No 19
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=30.87 E-value=70 Score=25.21 Aligned_cols=39 Identities=23% Similarity=0.075 Sum_probs=25.6
Q ss_pred CCceeEEEEecCccceeccCCCc----cchHHHHHHHHHHHHH
Q psy8736 146 EHSVSSAFCCEETKFSVKLDPRI----SICNAELISIQYAISF 184 (290)
Q Consensus 146 ~~~~G~av~~~~~~~~~~l~~~~----siftAE~~aI~~Al~~ 184 (290)
+-.||++++..|.+...+---+. ..--||..||..|+..
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~ 77 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE 77 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC
Confidence 34799999988876332222222 2344999999999864
No 20
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=29.75 E-value=57 Score=25.99 Aligned_cols=37 Identities=14% Similarity=-0.095 Sum_probs=25.1
Q ss_pred ceeEEEEecCccceeccCCCcc----chHHHHHHHHHHHHH
Q psy8736 148 SVSSAFCCEETKFSVKLDPRIS----ICNAELISIQYAISF 184 (290)
Q Consensus 148 ~~G~av~~~~~~~~~~l~~~~s----iftAE~~aI~~Al~~ 184 (290)
.||+|+...|.+...+---+.. -.=||..||..|+..
T Consensus 47 ~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~ 87 (150)
T 3mpz_A 47 PVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSG 87 (150)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHc
Confidence 7999999988874333222222 234999999998863
No 21
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=28.44 E-value=67 Score=25.12 Aligned_cols=37 Identities=14% Similarity=0.011 Sum_probs=24.5
Q ss_pred ceeEEEEecCccceeccCCCcc----chHHHHHHHHHHHHH
Q psy8736 148 SVSSAFCCEETKFSVKLDPRIS----ICNAELISIQYAISF 184 (290)
Q Consensus 148 ~~G~av~~~~~~~~~~l~~~~s----iftAE~~aI~~Al~~ 184 (290)
.||+|++..|.+...+---+.. -.-||..||..|+..
T Consensus 32 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~ 72 (138)
T 3r2n_A 32 PVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYAT 72 (138)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT
T ss_pred cEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHc
Confidence 6899999888774332222222 334999999998763
No 22
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=28.40 E-value=85 Score=29.01 Aligned_cols=86 Identities=6% Similarity=-0.156 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHhcC--------CC---CeEEeecCCCCCCceeEEEEecCcc----ceeccCCCccchHHHHHH-HHHH
Q psy8736 118 HQEIQIGFFELAQKF--------PN---YKQIFTDASKNEHSVSSAFCCEETK----FSVKLDPRISICNAELIS-IQYA 181 (290)
Q Consensus 118 p~~~~~~~~~i~~~~--------~~---~~~iyTDgSk~~~~~G~av~~~~~~----~~~~l~~~~siftAE~~a-I~~A 181 (290)
.++.+++|+++++.. ++ ...++||+|.. +..|+.....+.. .++.-....+...-|++| +..|
T Consensus 296 t~~~~~af~~lK~~L~~~p~l~~pd~~~~~~l~~das~~-g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~a 374 (428)
T 2zd1_B 296 TEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQK 374 (428)
T ss_dssp CHHHHHHHHHHHHHTTSCCTTCCCCTTSCCEEEEEEEET-TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcchhccccCCCCCEEEEEecCCC-CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHH
Confidence 456777888775421 21 24799999952 2234333333322 233322334456677777 9999
Q ss_pred HHHHHhhCCCCCCCCcEEEEecch
Q psy8736 182 ISFIISTTPLQVPTPKFVLYSDSL 205 (290)
Q Consensus 182 l~~~~~~~~~~~~~~~~~I~sDs~ 205 (290)
++...-.-. ++....+.+++|..
T Consensus 375 l~~~r~yl~-G~~~~~~i~~td~~ 397 (428)
T 2zd1_B 375 ITTESIVIW-GKTPKFKLPIQKET 397 (428)
T ss_dssp HHHHHHHHH-SSCCEEEESSCHHH
T ss_pred hhccceEEE-CCCCcEECCccHHH
Confidence 887544311 11234556678864
No 23
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=27.01 E-value=31 Score=25.74 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=23.0
Q ss_pred CCCCCCCcccchhehhhhccchhhcc
Q psy8736 238 PECDTCNCRLTVKHLLKYCNKYHNIR 263 (290)
Q Consensus 238 p~C~~c~~~~tv~Hil~~Cp~~~~~R 263 (290)
-.|+.||+...-.|-+-.||......
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~ 97 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNY 97 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGG
T ss_pred ccCCCCCCcCCcccceecCCCCCCcc
Confidence 58999999999999999999887544
No 24
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=26.19 E-value=64 Score=25.21 Aligned_cols=42 Identities=14% Similarity=0.036 Sum_probs=27.2
Q ss_pred eecCCCCCCceeEEEEecCccceecc----CCCccchHHHHHHHHHHHHH
Q psy8736 139 FTDASKNEHSVSSAFCCEETKFSVKL----DPRISICNAELISIQYAISF 184 (290)
Q Consensus 139 yTDgSk~~~~~G~av~~~~~~~~~~l----~~~~siftAE~~aI~~Al~~ 184 (290)
|..+| .||+|++..|.+...+- ..+....-||..||..|...
T Consensus 19 yaPyS----~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~ 64 (142)
T 3b8f_A 19 YPNDW----GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKF 64 (142)
T ss_dssp CSSSC----EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHH
T ss_pred CCCCC----CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHC
Confidence 44555 89999998887633222 12223445899999988863
No 25
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=24.70 E-value=89 Score=24.43 Aligned_cols=38 Identities=18% Similarity=0.030 Sum_probs=24.8
Q ss_pred CceeEEEEecCccceeccC----CCccchHHHHHHHHHHHHH
Q psy8736 147 HSVSSAFCCEETKFSVKLD----PRISICNAELISIQYAISF 184 (290)
Q Consensus 147 ~~~G~av~~~~~~~~~~l~----~~~siftAE~~aI~~Al~~ 184 (290)
-.||+|++..|.+...+-- .+..---||..||..|+..
T Consensus 33 f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~ 74 (141)
T 2d30_A 33 FQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE 74 (141)
T ss_dssp CCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT
T ss_pred CcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC
Confidence 3689999988876332221 2222345999999988863
No 26
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=21.38 E-value=25 Score=26.35 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=14.0
Q ss_pred CCCCCCCCcc-----cchhehhh
Q psy8736 237 PPECDTCNCR-----LTVKHLLK 254 (290)
Q Consensus 237 ~p~C~~c~~~-----~tv~Hil~ 254 (290)
...|.+||.. .+|+||+=
T Consensus 35 ~~~C~yCg~~~~~~~~~vDHIiP 57 (112)
T 2qgp_A 35 RGICHYCGEIFPPEELTMDHLVP 57 (112)
T ss_dssp HTBCTTTCCBCCGGGEEEEESSC
T ss_pred CCcCCCCCCcCCCCCcEEEEEee
Confidence 4689999875 47899973
Done!