BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8739
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TB3|A Chain A, Crystal Structure Of The Uch Domain Of Uch-L5 With 6
Residues Deleted
pdb|3TB3|B Chain B, Crystal Structure Of The Uch Domain Of Uch-L5 With 6
Residues Deleted
Length = 229
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 346 NTRAAADQLAREKAATEKIAKQL---QHQ---LNEVQGKLDETNRSLNDFDAAKKKLSIE 399
+T A Q+ AAT+ I L HQ L E + E ++S FDAA K L++
Sbjct: 77 DTIFFAKQVINNAAATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS---FDAAMKGLALS 133
Query: 400 NSDLLRQL 407
NSD++RQ+
Sbjct: 134 NSDVIRQV 141
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 1 AATEKIAKQL---QHQ---LNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQL 49
AAT+ I L HQ L E + E ++S FDAA K L++ NSD++RQ+
Sbjct: 90 AATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS---FDAAMKGLALSNSDVIRQV 141
>pdb|3A7S|A Chain A, Catalytic Domain Of Uch37
Length = 228
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 326 LNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQL---QHQ---LNEVQGKL 379
L K + E + + +T A Q+ AAT+ I L HQ L E +
Sbjct: 55 LFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNAAATQAIVSVLLNCTHQDVHLGETLSEF 114
Query: 380 DETNRSLNDFDAAKKKLSIENSDLLRQL 407
E ++S FDAA K L++ NSD++RQ+
Sbjct: 115 KEFSQS---FDAAMKGLALSNSDVIRQV 139
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 1 AATEKIAKQL---QHQ---LNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQL 49
AAT+ I L HQ L E + E ++S FDAA K L++ NSD++RQ+
Sbjct: 88 AATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS---FDAAMKGLALSNSDVIRQV 139
>pdb|3RIS|A Chain A, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RIS|B Chain B, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RIS|C Chain C, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RIS|D Chain D, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
Length = 245
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 326 LNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQL---QHQ---LNEVQGKL 379
L K + E + + +T A Q+ AT+ I L HQ L E +
Sbjct: 60 LFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEF 119
Query: 380 DETNRSLNDFDAAKKKLSIENSDLLRQL 407
E ++S FDAA K L++ NSD++RQ+
Sbjct: 120 KEFSQS---FDAAMKGLALSNSDVIRQV 144
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 1 AATEKIAKQL---QHQ---LNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQL 49
AT+ I L HQ L E + E ++S FDAA K L++ NSD++RQ+
Sbjct: 93 CATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS---FDAAMKGLALSNSDVIRQV 144
>pdb|3RII|A Chain A, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RII|B Chain B, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
Length = 233
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 326 LNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQL---QHQ---LNEVQGKL 379
L K + E + + +T A Q+ +AT+ I L HQ L E +
Sbjct: 60 LFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNASATQAIVSVLLNCTHQDVHLGETLSEF 119
Query: 380 DETNRSLNDFDAAKKKLSIENSDLLRQL 407
E ++S FDAA K L++ NSD++RQ+
Sbjct: 120 KEFSQS---FDAAXKGLALSNSDVIRQV 144
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 1 AATEKIAKQL---QHQ---LNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQL 49
+AT+ I L HQ L E + E ++S FDAA K L++ NSD++RQ+
Sbjct: 93 SATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS---FDAAXKGLALSNSDVIRQV 144
>pdb|3IHR|A Chain A, Crystal Structure Of Uch37
Length = 328
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 346 NTRAAADQLAREKAATEKIAKQL---QHQ---LNEVQGKLDETNRSLNDFDAAKKKLSIE 399
+T A Q+ AT+ I L HQ L E + E ++S FDAA K L++
Sbjct: 75 DTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS---FDAAXKGLALS 131
Query: 400 NSDLLRQL 407
NSD++RQ+
Sbjct: 132 NSDVIRQV 139
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 1 AATEKIAKQL---QHQ---LNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQL 49
AT+ I L HQ L E + E ++S FDAA K L++ NSD++RQ+
Sbjct: 88 CATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS---FDAAXKGLALSNSDVIRQV 139
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 163 DVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDE 213
++EK KRK+EG+ E +A+L+ EL+ + +K++E+ + A+LEDE
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE 1107
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 10/110 (9%)
Query: 372 LNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDT 431
++E++ +L + +S + + K+KL E+SDL Q+ E ++Q+++L K L + E+
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL---KAQLAKKEEEL 1097
Query: 432 K----RLADEEGRERATLLGKFRNLEHDIDNIREQLEEE--AEGKADLQR 475
+ RL DE ++ L K R LE I +++E LE E A KA+ Q+
Sbjct: 1098 QAALARLEDETS-QKNNALKKIRELESHISDLQEDLESEKAARNKAEKQK 1146
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
Length = 202
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 353 QLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDL--LRQLEEA 410
++A+E+ ++ + +L +QG L ++ + +DAA IE+ DL L E
Sbjct: 57 EIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERV 116
Query: 411 ESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEA 467
+ +Q KI I T +E + A+ GK R+ +H + R Q + A
Sbjct: 117 LFEFAQ-PKIVIVTTPNIEYNVKFANLPA-------GKLRHKDHRFEWTRSQFQNWA 165
>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
Length = 217
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 353 QLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDL--LRQLEEA 410
++A+E+ ++ + +L +QG L ++ + +DAA IE+ DL L E
Sbjct: 67 EIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERV 126
Query: 411 ESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEA 467
+ +Q KI I T +E + A+ GK R+ +H + R Q + A
Sbjct: 127 LFEFAQ-PKIVIVTTPNIEYNVKFANLPA-------GKLRHKDHRFEWTRSQFQNWA 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.305 0.122 0.308
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,902,317
Number of Sequences: 62578
Number of extensions: 415269
Number of successful extensions: 1501
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1317
Number of HSP's gapped (non-prelim): 215
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 54 (25.4 bits)