Query psy8739
Match_columns 558
No_of_seqs 332 out of 2186
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 17:56:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161|consensus 100.0 3.5E-35 7.7E-40 332.0 73.6 529 6-558 902-1497(1930)
2 KOG0161|consensus 100.0 1.7E-26 3.6E-31 262.1 70.4 468 2-494 1235-1763(1930)
3 PF01576 Myosin_tail_1: Myosin 100.0 1.1E-32 2.4E-37 303.1 0.0 466 2-492 177-703 (859)
4 PF01576 Myosin_tail_1: Myosin 100.0 1.3E-31 2.9E-36 294.6 0.0 373 186-558 3-439 (859)
5 PRK02224 chromosome segregatio 99.7 7.1E-09 1.5E-13 118.2 70.7 45 223-267 357-401 (880)
6 PRK02224 chromosome segregatio 99.6 1E-07 2.2E-12 108.8 71.1 44 31-74 204-247 (880)
7 KOG0977|consensus 99.6 6.1E-11 1.3E-15 120.6 36.8 342 121-494 43-389 (546)
8 PF00038 Filament: Intermediat 99.5 1.6E-09 3.4E-14 108.0 41.3 303 121-494 5-309 (312)
9 PF10174 Cast: RIM-binding pro 99.4 2.3E-06 5E-11 92.6 63.8 95 174-268 316-410 (775)
10 TIGR00606 rad50 rad50. This fa 99.3 7.7E-06 1.7E-10 96.6 72.3 8 316-323 746-753 (1311)
11 KOG4674|consensus 99.3 6E-06 1.3E-10 94.9 71.5 34 513-546 1267-1300(1822)
12 KOG4674|consensus 99.3 6.3E-06 1.4E-10 94.7 67.3 47 446-492 1249-1295(1822)
13 PF10174 Cast: RIM-binding pro 99.3 5.5E-06 1.2E-10 89.8 65.4 26 181-206 184-209 (775)
14 TIGR00606 rad50 rad50. This fa 99.2 3.1E-05 6.7E-10 91.6 72.0 46 336-381 882-927 (1311)
15 TIGR02169 SMC_prok_A chromosom 99.2 4.2E-05 9.1E-10 90.6 75.4 42 514-555 955-1003(1164)
16 COG1196 Smc Chromosome segrega 99.1 8.9E-05 1.9E-09 86.7 75.8 44 514-557 946-996 (1163)
17 PF00038 Filament: Intermediat 98.9 8.9E-05 1.9E-09 73.9 40.0 109 122-241 27-136 (312)
18 COG1196 Smc Chromosome segrega 98.9 0.00057 1.2E-08 80.0 75.5 31 177-207 401-431 (1163)
19 PRK03918 chromosome segregatio 98.9 0.00053 1.2E-08 78.6 73.5 16 250-265 412-427 (880)
20 PF07888 CALCOCO1: Calcium bin 98.8 0.00037 8E-09 71.9 47.8 33 511-543 425-457 (546)
21 KOG0612|consensus 98.8 0.00066 1.4E-08 74.9 45.1 280 171-456 492-786 (1317)
22 PRK04778 septation ring format 98.7 0.001 2.2E-08 71.7 50.9 53 337-389 284-336 (569)
23 KOG0977|consensus 98.7 0.00034 7.3E-09 72.2 36.2 112 424-538 273-384 (546)
24 PF00261 Tropomyosin: Tropomyo 98.6 0.0002 4.3E-09 67.9 30.6 86 407-492 136-221 (237)
25 PF00261 Tropomyosin: Tropomyo 98.6 0.00016 3.5E-09 68.5 28.7 79 5-83 1-79 (237)
26 KOG0971|consensus 98.6 0.002 4.2E-08 68.8 38.8 303 226-555 228-549 (1243)
27 KOG0996|consensus 98.5 0.0037 8.1E-08 68.9 66.5 96 173-268 500-595 (1293)
28 KOG0971|consensus 98.5 0.0034 7.3E-08 67.1 41.1 173 164-354 267-443 (1243)
29 PF05483 SCP-1: Synaptonemal c 98.4 0.0039 8.4E-08 64.9 73.2 33 525-557 740-772 (786)
30 PF05701 WEMBL: Weak chloropla 98.4 0.0049 1.1E-07 65.5 57.5 10 125-134 39-48 (522)
31 PF07888 CALCOCO1: Calcium bin 98.3 0.0065 1.4E-07 63.0 47.6 43 511-553 418-460 (546)
32 KOG0612|consensus 98.3 0.012 2.6E-07 65.3 43.8 145 396-547 672-816 (1317)
33 KOG0996|consensus 98.3 0.014 3E-07 64.6 65.6 43 199-241 547-589 (1293)
34 KOG4643|consensus 98.3 0.013 2.8E-07 63.7 54.2 195 174-382 258-455 (1195)
35 PF05701 WEMBL: Weak chloropla 98.2 0.011 2.5E-07 62.8 63.4 50 30-79 31-80 (522)
36 KOG4643|consensus 98.1 0.024 5.1E-07 61.8 56.7 34 124-157 261-294 (1195)
37 PF05483 SCP-1: Synaptonemal c 98.0 0.028 6.1E-07 58.7 70.8 83 185-267 238-327 (786)
38 KOG0933|consensus 97.9 0.07 1.5E-06 58.4 65.4 89 344-432 789-877 (1174)
39 PRK01156 chromosome segregatio 97.9 0.1 2.2E-06 60.0 71.9 12 313-324 475-486 (895)
40 KOG0976|consensus 97.8 0.068 1.5E-06 56.8 62.2 27 450-476 479-505 (1265)
41 PF05557 MAD: Mitotic checkpoi 97.8 2E-05 4.2E-10 87.5 4.8 35 515-549 501-535 (722)
42 PRK04778 septation ring format 97.7 0.11 2.3E-06 56.3 55.2 49 312-360 287-335 (569)
43 PHA02562 46 endonuclease subun 97.6 0.098 2.1E-06 56.8 30.6 33 344-376 215-247 (562)
44 PF06160 EzrA: Septation ring 97.6 0.15 3.3E-06 54.9 54.0 15 248-262 166-180 (560)
45 PF05557 MAD: Mitotic checkpoi 97.6 0.00089 1.9E-08 74.4 14.2 24 185-208 303-326 (722)
46 PHA02562 46 endonuclease subun 97.5 0.078 1.7E-06 57.6 28.2 21 247-267 178-198 (562)
47 KOG0994|consensus 97.5 0.25 5.4E-06 54.9 53.6 48 502-549 1702-1749(1758)
48 KOG0976|consensus 97.5 0.2 4.4E-06 53.4 61.3 54 453-506 409-462 (1265)
49 PF05622 HOOK: HOOK protein; 97.5 2.3E-05 5.1E-10 86.7 0.0 57 142-199 292-351 (713)
50 KOG0964|consensus 97.4 0.29 6.4E-06 53.6 67.9 197 8-236 166-370 (1200)
51 PF12128 DUF3584: Protein of u 97.4 0.59 1.3E-05 55.4 73.4 34 344-377 609-642 (1201)
52 KOG0250|consensus 97.3 0.45 9.7E-06 53.1 59.8 45 14-58 209-253 (1074)
53 PF14662 CCDC155: Coiled-coil 97.3 0.11 2.4E-06 46.0 27.1 102 22-158 4-105 (193)
54 PF09726 Macoilin: Transmembra 97.3 0.41 8.9E-06 52.5 30.9 36 510-545 622-657 (697)
55 PRK11637 AmiB activator; Provi 97.3 0.31 6.7E-06 50.8 29.9 6 319-324 45-50 (428)
56 PF15070 GOLGA2L5: Putative go 97.2 0.49 1.1E-05 51.0 44.5 15 224-238 89-103 (617)
57 PF10473 CENP-F_leu_zip: Leuci 97.2 0.12 2.6E-06 44.0 19.7 92 364-455 25-116 (140)
58 KOG0933|consensus 97.2 0.58 1.3E-05 51.6 67.5 149 118-266 334-502 (1174)
59 PF12718 Tropomyosin_1: Tropom 97.2 0.14 2.9E-06 44.2 20.0 46 447-492 87-132 (143)
60 PF05622 HOOK: HOOK protein; 97.1 0.00011 2.3E-09 81.4 0.0 36 431-466 486-521 (713)
61 COG1579 Zn-ribbon protein, pos 97.1 0.26 5.5E-06 46.0 22.5 38 376-413 44-81 (239)
62 PF14662 CCDC155: Coiled-coil 97.1 0.2 4.4E-06 44.5 27.1 23 246-268 32-54 (193)
63 PF09728 Taxilin: Myosin-like 97.0 0.4 8.6E-06 47.2 41.9 42 227-268 112-153 (309)
64 PF09726 Macoilin: Transmembra 96.9 0.9 2E-05 49.9 31.5 33 407-439 624-656 (697)
65 PRK09039 hypothetical protein; 96.9 0.38 8.3E-06 48.2 22.6 11 482-492 190-200 (343)
66 KOG4673|consensus 96.9 0.81 1.8E-05 48.2 59.5 36 32-67 345-380 (961)
67 KOG0018|consensus 96.8 1.2 2.6E-05 49.7 56.8 111 442-557 783-896 (1141)
68 PF14915 CCDC144C: CCDC144C pr 96.8 0.5 1.1E-05 45.0 39.3 16 227-242 4-19 (305)
69 PF14915 CCDC144C: CCDC144C pr 96.8 0.53 1.1E-05 44.8 41.1 27 224-250 65-91 (305)
70 KOG0978|consensus 96.8 1.1 2.4E-05 48.4 56.1 129 364-492 490-618 (698)
71 PRK09039 hypothetical protein; 96.7 0.45 9.7E-06 47.7 21.8 27 365-391 76-102 (343)
72 KOG1029|consensus 96.7 1.1 2.4E-05 47.9 37.6 129 364-492 452-580 (1118)
73 PRK04863 mukB cell division pr 96.7 2.3 5E-05 50.9 68.4 48 510-557 999-1046(1486)
74 PF09730 BicD: Microtubule-ass 96.7 1.4 2.9E-05 48.2 58.4 95 454-551 590-695 (717)
75 KOG0250|consensus 96.7 1.6 3.5E-05 48.9 60.5 65 397-461 660-724 (1074)
76 PF15070 GOLGA2L5: Putative go 96.6 1.3 2.9E-05 47.8 43.7 45 224-268 24-68 (617)
77 COG1579 Zn-ribbon protein, pos 96.5 0.71 1.5E-05 43.1 22.7 41 424-464 108-148 (239)
78 KOG0980|consensus 96.5 1.8 3.9E-05 47.3 30.1 78 415-492 413-490 (980)
79 PF09730 BicD: Microtubule-ass 96.3 2.2 4.7E-05 46.6 47.9 125 136-269 22-147 (717)
80 KOG4673|consensus 96.3 1.9 4E-05 45.7 64.0 44 488-531 882-925 (961)
81 PF06160 EzrA: Septation ring 96.3 2.1 4.7E-05 46.1 60.5 106 386-491 374-488 (560)
82 KOG0963|consensus 96.3 1.9 4.1E-05 45.4 42.3 82 467-553 316-426 (629)
83 COG1340 Uncharacterized archae 96.2 1.2 2.6E-05 42.7 35.1 12 253-264 110-121 (294)
84 PF15619 Lebercilin: Ciliary p 96.2 0.92 2E-05 41.3 25.3 52 385-436 55-106 (194)
85 PF05667 DUF812: Protein of un 96.2 2.5 5.3E-05 45.6 34.6 117 198-319 325-442 (594)
86 KOG1003|consensus 96.0 1 2.2E-05 40.0 27.6 115 377-491 39-153 (205)
87 COG4942 Membrane-bound metallo 96.0 2.1 4.6E-05 43.3 28.0 65 315-379 162-226 (420)
88 PF10473 CENP-F_leu_zip: Leuci 96.0 0.88 1.9E-05 38.8 19.9 86 332-417 21-106 (140)
89 PF05010 TACC: Transforming ac 95.9 1.4 3E-05 40.4 29.3 24 472-495 140-163 (207)
90 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.5 1.3 2.9E-05 37.6 18.8 78 395-472 7-84 (132)
91 PF05010 TACC: Transforming ac 95.5 2 4.3E-05 39.4 28.6 110 431-540 81-191 (207)
92 PF05667 DUF812: Protein of un 95.5 4.6 0.0001 43.6 34.8 79 472-551 509-591 (594)
93 COG0419 SbcC ATPase involved i 95.5 6.7 0.00015 45.3 73.3 8 287-294 483-490 (908)
94 PF08826 DMPK_coil: DMPK coile 95.3 0.38 8.3E-06 34.4 9.6 60 430-489 1-60 (61)
95 PF15619 Lebercilin: Ciliary p 95.3 2.3 4.9E-05 38.8 25.2 13 284-296 18-30 (194)
96 COG1340 Uncharacterized archae 95.1 3.4 7.3E-05 39.7 39.3 36 232-267 65-100 (294)
97 KOG0978|consensus 95.1 6.3 0.00014 42.8 63.5 47 30-76 52-98 (698)
98 COG4942 Membrane-bound metallo 94.9 4.9 0.00011 40.8 30.7 27 427-453 218-244 (420)
99 KOG0999|consensus 94.9 5.6 0.00012 41.1 39.4 81 361-448 147-230 (772)
100 PF15066 CAGE1: Cancer-associa 94.8 5.2 0.00011 40.6 25.9 54 188-241 384-437 (527)
101 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.8 2.2 4.8E-05 36.3 18.2 48 34-81 4-51 (132)
102 PF09728 Taxilin: Myosin-like 94.5 5.4 0.00012 39.4 41.9 81 187-270 43-127 (309)
103 KOG0964|consensus 94.5 10 0.00022 42.3 64.5 28 57-84 296-323 (1200)
104 KOG0946|consensus 94.5 9 0.00019 41.8 32.6 93 175-268 739-831 (970)
105 PRK11281 hypothetical protein; 94.4 13 0.00029 43.3 28.9 46 510-555 285-330 (1113)
106 KOG1029|consensus 94.3 9.6 0.00021 41.2 36.9 16 364-379 487-502 (1118)
107 KOG0946|consensus 94.3 10 0.00022 41.4 31.7 19 223-241 679-697 (970)
108 PF10481 CENP-F_N: Cenp-F N-te 94.3 3.5 7.6E-05 38.7 15.6 55 162-216 77-131 (307)
109 PF04849 HAP1_N: HAP1 N-termin 94.2 5.9 0.00013 38.5 25.5 60 379-438 208-267 (306)
110 PF12325 TMF_TATA_bd: TATA ele 93.6 3.6 7.9E-05 34.1 14.7 42 451-492 72-113 (120)
111 COG3883 Uncharacterized protei 93.5 7 0.00015 37.1 21.8 47 335-381 45-91 (265)
112 PF09304 Cortex-I_coil: Cortex 93.4 3.3 7.1E-05 33.1 15.3 30 311-340 13-42 (107)
113 TIGR03007 pepcterm_ChnLen poly 93.3 13 0.00028 39.7 24.2 43 502-544 340-382 (498)
114 PF10146 zf-C4H2: Zinc finger- 93.1 6.1 0.00013 37.0 15.5 9 396-404 86-94 (230)
115 TIGR01005 eps_transp_fam exopo 92.8 15 0.00033 41.5 21.5 113 427-543 289-402 (754)
116 PF09304 Cortex-I_coil: Cortex 92.8 4.2 9.1E-05 32.5 14.4 59 431-489 42-100 (107)
117 PF12325 TMF_TATA_bd: TATA ele 92.6 5.2 0.00011 33.2 15.3 25 191-215 20-44 (120)
118 KOG0995|consensus 92.6 15 0.00033 38.5 48.8 23 446-468 516-538 (581)
119 KOG0994|consensus 92.5 23 0.00051 40.3 57.3 18 419-436 1612-1629(1758)
120 PF10481 CENP-F_N: Cenp-F N-te 92.2 10 0.00023 35.7 18.1 62 424-492 65-126 (307)
121 TIGR01005 eps_transp_fam exopo 92.2 24 0.00052 39.9 24.8 23 526-548 378-400 (754)
122 PF09789 DUF2353: Uncharacteri 91.9 14 0.0003 36.4 24.6 43 445-487 138-180 (319)
123 TIGR03185 DNA_S_dndD DNA sulfu 91.0 29 0.00063 38.4 40.7 53 219-271 206-258 (650)
124 PF04012 PspA_IM30: PspA/IM30 90.8 14 0.0003 34.5 17.7 104 450-555 33-136 (221)
125 PF15290 Syntaphilin: Golgi-lo 90.3 15 0.00033 34.8 14.5 93 400-492 70-162 (305)
126 PF04849 HAP1_N: HAP1 N-termin 89.6 21 0.00046 34.7 27.4 94 452-552 211-304 (306)
127 PF09755 DUF2046: Uncharacteri 89.6 21 0.00046 34.7 36.6 25 204-228 37-61 (310)
128 KOG1899|consensus 89.6 31 0.00067 36.6 22.2 82 386-467 169-251 (861)
129 COG4372 Uncharacterized protei 89.6 23 0.00051 35.1 31.8 90 316-405 83-172 (499)
130 PF11559 ADIP: Afadin- and alp 89.3 14 0.0003 32.2 16.6 51 383-433 51-101 (151)
131 KOG0963|consensus 88.9 35 0.00076 36.3 46.1 139 173-325 189-328 (629)
132 PF06008 Laminin_I: Laminin Do 88.5 25 0.00053 33.9 29.2 19 473-491 183-201 (264)
133 PF13851 GAS: Growth-arrest sp 88.3 21 0.00045 32.9 28.0 33 315-347 28-60 (201)
134 PF08317 Spc7: Spc7 kinetochor 88.3 29 0.00064 34.6 27.1 40 422-461 159-198 (325)
135 COG4372 Uncharacterized protei 87.9 31 0.00067 34.4 31.3 42 363-404 137-178 (499)
136 PF08826 DMPK_coil: DMPK coile 87.7 8.4 0.00018 27.6 9.9 20 320-339 3-22 (61)
137 PF06008 Laminin_I: Laminin Do 87.5 28 0.00061 33.5 26.9 118 371-492 74-195 (264)
138 TIGR03007 pepcterm_ChnLen poly 87.1 46 0.00099 35.5 23.8 40 511-550 342-381 (498)
139 KOG4593|consensus 86.5 52 0.0011 35.6 55.1 17 338-354 302-318 (716)
140 PF10146 zf-C4H2: Zinc finger- 86.2 30 0.00064 32.5 14.6 67 425-491 31-97 (230)
141 COG4026 Uncharacterized protei 86.1 24 0.00051 32.2 12.5 68 425-492 134-201 (290)
142 PF04582 Reo_sigmaC: Reovirus 85.8 1.8 3.9E-05 42.2 5.9 35 402-436 116-150 (326)
143 PF15066 CAGE1: Cancer-associa 85.7 45 0.00098 34.1 27.5 63 415-477 386-448 (527)
144 PF06705 SF-assemblin: SF-asse 85.2 35 0.00077 32.5 29.9 79 167-245 64-144 (247)
145 PF14197 Cep57_CLD_2: Centroso 84.9 13 0.00029 27.4 9.8 59 425-483 4-62 (69)
146 COG3883 Uncharacterized protei 84.8 37 0.00081 32.4 24.8 49 331-379 48-96 (265)
147 PF09755 DUF2046: Uncharacteri 84.2 43 0.00093 32.6 37.6 91 176-266 37-129 (310)
148 PF14197 Cep57_CLD_2: Centroso 83.9 15 0.00033 27.2 9.4 30 371-400 6-35 (69)
149 PF07889 DUF1664: Protein of u 83.8 24 0.00053 29.5 12.9 31 162-192 57-87 (126)
150 PRK10884 SH3 domain-containing 83.4 27 0.00059 32.1 12.2 12 146-157 98-109 (206)
151 TIGR02680 conserved hypothetic 83.2 1.2E+02 0.0026 36.9 31.6 40 453-492 881-920 (1353)
152 PF13851 GAS: Growth-arrest sp 83.0 38 0.00082 31.1 27.2 103 364-466 28-133 (201)
153 TIGR02680 conserved hypothetic 83.0 1.2E+02 0.0026 36.9 32.9 39 453-491 874-912 (1353)
154 PF09789 DUF2353: Uncharacteri 83.0 51 0.0011 32.5 24.5 13 440-452 161-173 (319)
155 PF14073 Cep57_CLD: Centrosome 82.5 35 0.00076 30.3 21.1 95 358-452 66-167 (178)
156 PF06818 Fez1: Fez1; InterPro 82.4 39 0.00084 30.8 22.3 8 316-323 12-19 (202)
157 PF02183 HALZ: Homeobox associ 82.3 8 0.00017 25.8 6.1 42 451-492 2-43 (45)
158 KOG0249|consensus 82.0 82 0.0018 34.2 18.9 34 511-544 224-257 (916)
159 COG4477 EzrA Negative regulato 81.7 73 0.0016 33.4 50.4 22 511-532 469-490 (570)
160 COG4026 Uncharacterized protei 81.6 26 0.00055 32.0 10.8 60 351-410 144-203 (290)
161 KOG0995|consensus 80.3 84 0.0018 33.3 48.2 61 164-231 264-324 (581)
162 PF06428 Sec2p: GDP/GTP exchan 79.4 6.2 0.00013 31.6 5.7 58 328-385 8-66 (100)
163 PF13870 DUF4201: Domain of un 78.1 51 0.0011 29.5 22.5 34 514-547 142-175 (177)
164 PRK10929 putative mechanosensi 78.1 1.5E+02 0.0033 34.9 33.0 270 288-558 26-313 (1109)
165 TIGR00634 recN DNA repair prot 77.9 1.1E+02 0.0024 33.2 23.6 51 486-536 315-365 (563)
166 PF00769 ERM: Ezrin/radixin/mo 77.8 66 0.0014 30.6 17.6 43 419-461 75-117 (246)
167 COG1842 PspA Phage shock prote 77.8 62 0.0013 30.3 21.5 47 366-412 27-73 (225)
168 COG1842 PspA Phage shock prote 77.5 63 0.0014 30.2 19.2 104 164-267 29-137 (225)
169 KOG1853|consensus 77.1 64 0.0014 30.1 22.7 29 409-437 116-144 (333)
170 PF06818 Fez1: Fez1; InterPro 76.4 61 0.0013 29.6 22.0 96 342-437 10-105 (202)
171 PRK15422 septal ring assembly 75.9 31 0.00068 26.0 9.7 53 219-271 22-74 (79)
172 PF09738 DUF2051: Double stran 75.6 85 0.0019 30.8 14.3 26 237-262 141-166 (302)
173 KOG1899|consensus 75.3 1.2E+02 0.0026 32.4 20.9 75 418-492 173-248 (861)
174 PRK09343 prefoldin subunit bet 74.2 50 0.0011 27.5 13.7 38 122-159 9-46 (121)
175 PF05911 DUF869: Plant protein 73.0 1.7E+02 0.0036 33.0 35.2 250 302-554 13-309 (769)
176 PF12329 TMF_DNA_bd: TATA elem 72.0 39 0.00085 25.3 9.7 67 3-69 3-69 (74)
177 PF10498 IFT57: Intra-flagella 72.0 1.2E+02 0.0025 30.8 17.8 45 365-409 275-319 (359)
178 KOG0804|consensus 71.2 1.3E+02 0.0028 30.9 16.9 72 417-491 380-451 (493)
179 PF07889 DUF1664: Protein of u 71.0 62 0.0013 27.2 13.0 40 312-354 41-80 (126)
180 COG2433 Uncharacterized conser 70.6 96 0.0021 33.2 13.1 25 223-247 475-499 (652)
181 PF06005 DUF904: Protein of un 69.8 44 0.00095 25.0 10.5 48 445-492 16-63 (72)
182 TIGR02338 gimC_beta prefoldin, 69.8 59 0.0013 26.5 13.1 38 123-160 6-43 (110)
183 TIGR03017 EpsF chain length de 69.5 1.5E+02 0.0032 31.0 23.5 24 517-540 342-365 (444)
184 PF00769 ERM: Ezrin/radixin/mo 69.4 1.1E+02 0.0023 29.2 18.0 15 473-487 187-201 (246)
185 COG1382 GimC Prefoldin, chaper 69.2 65 0.0014 26.7 11.9 37 122-158 72-108 (119)
186 KOG0018|consensus 69.1 2.2E+02 0.0048 32.8 57.5 198 332-539 680-892 (1141)
187 KOG4593|consensus 67.9 1.9E+02 0.0041 31.6 65.0 18 474-491 558-575 (716)
188 KOG0979|consensus 67.6 2.3E+02 0.005 32.4 34.2 281 192-504 627-913 (1072)
189 PF08581 Tup_N: Tup N-terminal 67.4 53 0.0012 25.0 10.6 9 485-493 56-64 (79)
190 PF10212 TTKRSYEDQ: Predicted 66.8 1.8E+02 0.0038 30.8 14.9 64 425-491 440-503 (518)
191 COG1382 GimC Prefoldin, chaper 66.2 75 0.0016 26.3 13.5 38 123-160 9-46 (119)
192 TIGR03185 DNA_S_dndD DNA sulfu 66.2 2.2E+02 0.0047 31.6 40.5 23 246-268 265-287 (650)
193 PF12777 MT: Microtubule-bindi 66.0 98 0.0021 31.2 12.2 79 388-466 232-310 (344)
194 TIGR03017 EpsF chain length de 65.5 1.8E+02 0.0039 30.4 22.5 31 520-550 338-368 (444)
195 PF15397 DUF4618: Domain of un 65.4 1.3E+02 0.0028 28.7 30.4 29 128-156 7-35 (258)
196 PF09738 DUF2051: Double stran 65.3 1.4E+02 0.0031 29.3 13.4 15 122-136 79-93 (302)
197 PF02183 HALZ: Homeobox associ 65.2 38 0.00082 22.6 6.0 31 204-234 8-38 (45)
198 PF14073 Cep57_CLD: Centrosome 64.1 1.1E+02 0.0023 27.4 20.4 83 135-217 5-94 (178)
199 KOG0249|consensus 63.9 2.3E+02 0.005 31.1 18.9 50 439-488 208-257 (916)
200 PF06428 Sec2p: GDP/GTP exchan 63.2 19 0.00042 28.8 5.1 52 384-435 8-60 (100)
201 PF15397 DUF4618: Domain of un 63.0 1.4E+02 0.0031 28.4 28.5 27 388-414 71-97 (258)
202 cd00632 Prefoldin_beta Prefold 62.6 81 0.0018 25.4 12.9 32 127-158 6-37 (105)
203 PF15450 DUF4631: Domain of un 62.1 2.1E+02 0.0046 30.1 54.3 30 358-387 260-289 (531)
204 PF10498 IFT57: Intra-flagella 61.0 1.9E+02 0.0042 29.2 17.0 48 445-492 271-318 (359)
205 KOG1850|consensus 60.9 1.7E+02 0.0037 28.6 33.7 75 472-547 254-329 (391)
206 KOG0962|consensus 59.4 3.7E+02 0.008 32.0 60.5 36 8-43 577-612 (1294)
207 KOG1853|consensus 59.1 1.6E+02 0.0034 27.7 22.0 24 410-433 138-161 (333)
208 COG3074 Uncharacterized protei 57.4 73 0.0016 23.2 10.0 37 235-271 38-74 (79)
209 PF04102 SlyX: SlyX; InterPro 57.2 70 0.0015 23.6 6.9 47 5-51 4-50 (69)
210 PF04871 Uso1_p115_C: Uso1 / p 55.5 1.3E+02 0.0029 25.6 15.5 26 209-234 85-110 (136)
211 PF07106 TBPIP: Tat binding pr 55.3 1E+02 0.0023 27.3 9.2 13 365-377 95-107 (169)
212 KOG4360|consensus 55.2 2.7E+02 0.0059 29.2 18.0 17 224-240 92-108 (596)
213 KOG4807|consensus 55.1 2.3E+02 0.0051 28.4 29.4 31 294-324 343-373 (593)
214 KOG4360|consensus 54.9 2.8E+02 0.006 29.1 18.3 77 185-261 210-286 (596)
215 PF04102 SlyX: SlyX; InterPro 54.8 84 0.0018 23.2 7.3 47 446-492 3-49 (69)
216 COG5185 HEC1 Protein involved 54.7 2.7E+02 0.0058 28.9 38.2 10 258-267 352-361 (622)
217 PF14389 Lzipper-MIP1: Leucine 54.2 1E+02 0.0022 24.0 7.8 73 420-492 9-85 (88)
218 KOG1937|consensus 53.9 2.7E+02 0.0058 28.7 31.4 41 517-557 469-514 (521)
219 PF10205 KLRAQ: Predicted coil 53.7 1.2E+02 0.0025 24.4 10.7 46 393-438 7-52 (102)
220 PRK10869 recombination and rep 53.4 3.3E+02 0.0071 29.5 24.2 58 483-540 307-364 (553)
221 TIGR02977 phageshock_pspA phag 53.2 1.9E+02 0.0042 26.9 18.6 93 170-262 35-132 (219)
222 PF08232 Striatin: Striatin fa 53.2 1.4E+02 0.0031 25.3 9.6 61 320-380 10-70 (134)
223 PRK04325 hypothetical protein; 52.4 98 0.0021 23.2 7.7 48 445-492 7-54 (74)
224 PRK10698 phage shock protein P 52.2 2E+02 0.0044 26.8 23.4 51 363-413 24-74 (222)
225 PRK00295 hypothetical protein; 50.6 99 0.0021 22.7 7.2 47 446-492 4-50 (68)
226 PF12795 MscS_porin: Mechanose 49.9 2.3E+02 0.005 26.8 26.5 51 363-413 85-135 (240)
227 PF15290 Syntaphilin: Golgi-lo 49.8 2.4E+02 0.0053 27.0 15.5 46 393-438 119-164 (305)
228 PF06705 SF-assemblin: SF-asse 49.6 2.4E+02 0.0051 26.8 34.8 70 199-268 68-139 (247)
229 PRK00736 hypothetical protein; 49.3 1E+02 0.0023 22.6 7.2 46 447-492 5-50 (68)
230 PF15188 CCDC-167: Coiled-coil 48.2 86 0.0019 24.2 6.2 32 524-555 36-67 (85)
231 PF13870 DUF4201: Domain of un 48.2 2E+02 0.0044 25.6 22.3 14 479-492 156-169 (177)
232 PF15450 DUF4631: Domain of un 47.3 3.7E+02 0.008 28.4 58.7 55 6-60 14-68 (531)
233 PF14389 Lzipper-MIP1: Leucine 47.3 1.1E+02 0.0024 23.8 7.0 23 313-335 14-36 (88)
234 PRK02793 phi X174 lysis protei 47.1 1.2E+02 0.0026 22.6 7.6 48 445-492 6-53 (72)
235 PRK04406 hypothetical protein; 45.8 1.3E+02 0.0028 22.7 8.0 12 10-21 9-20 (75)
236 PRK09841 cryptic autophosphory 45.7 4.9E+02 0.011 29.3 16.4 32 511-542 364-395 (726)
237 PRK04406 hypothetical protein; 45.1 1.3E+02 0.0029 22.6 8.1 48 445-492 9-56 (75)
238 PF10212 TTKRSYEDQ: Predicted 44.6 4.1E+02 0.0089 28.2 14.4 16 473-488 499-514 (518)
239 KOG1962|consensus 44.0 2.7E+02 0.0058 25.8 10.4 39 510-548 172-210 (216)
240 PF06156 DUF972: Protein of un 44.0 1.3E+02 0.0028 24.4 7.1 39 10-48 13-51 (107)
241 PRK03947 prefoldin subunit alp 43.4 2.1E+02 0.0045 24.4 13.8 19 457-475 97-115 (140)
242 PRK00295 hypothetical protein; 42.9 1.3E+02 0.0029 22.1 7.4 17 10-26 10-26 (68)
243 PF06156 DUF972: Protein of un 42.4 1.9E+02 0.004 23.6 8.2 46 365-410 10-55 (107)
244 KOG0962|consensus 42.3 6.7E+02 0.015 30.0 64.1 71 421-491 880-950 (1294)
245 PRK02119 hypothetical protein; 42.2 1.4E+02 0.0031 22.2 7.7 48 445-492 7-54 (73)
246 PRK00736 hypothetical protein; 42.0 1.4E+02 0.003 22.0 7.1 32 8-39 8-39 (68)
247 KOG2077|consensus 41.7 4.7E+02 0.01 28.0 12.9 56 437-492 319-374 (832)
248 TIGR02338 gimC_beta prefoldin, 41.4 1.9E+02 0.0042 23.5 11.8 35 123-157 70-104 (110)
249 PRK09343 prefoldin subunit bet 40.5 2.1E+02 0.0047 23.7 13.5 11 423-433 96-106 (121)
250 KOG4302|consensus 39.9 5.5E+02 0.012 28.3 21.7 31 321-351 54-84 (660)
251 PF05700 BCAS2: Breast carcino 39.8 3.2E+02 0.0069 25.5 12.3 79 136-214 138-216 (221)
252 PF10205 KLRAQ: Predicted coil 39.6 2E+02 0.0043 23.1 11.1 55 206-260 17-71 (102)
253 PF15372 DUF4600: Domain of un 39.4 2.3E+02 0.005 23.8 10.9 102 124-235 5-106 (129)
254 PRK13169 DNA replication intia 38.9 1.7E+02 0.0038 23.9 7.1 44 8-51 11-54 (110)
255 PF01920 Prefoldin_2: Prefoldi 38.5 2E+02 0.0043 22.8 12.7 21 137-157 15-35 (106)
256 PRK02119 hypothetical protein; 37.9 1.7E+02 0.0037 21.9 8.3 49 220-268 7-55 (73)
257 PF15035 Rootletin: Ciliary ro 36.4 3.2E+02 0.007 24.6 18.4 32 123-154 63-94 (182)
258 smart00502 BBC B-Box C-termina 36.1 2.4E+02 0.0052 23.0 14.3 8 428-435 9-16 (127)
259 KOG2264|consensus 35.7 3.5E+02 0.0076 28.8 10.1 22 365-386 102-123 (907)
260 PF10234 Cluap1: Clusterin-ass 35.2 4.2E+02 0.0091 25.5 18.7 40 172-211 175-214 (267)
261 PF05377 FlaC_arch: Flagella a 35.2 1.5E+02 0.0033 20.8 5.2 32 516-547 6-37 (55)
262 PF04899 MbeD_MobD: MbeD/MobD 34.8 1.9E+02 0.0041 21.5 10.0 44 364-407 22-65 (70)
263 PRK13169 DNA replication intia 34.4 2.6E+02 0.0056 22.9 8.1 46 365-410 10-55 (110)
264 PRK10803 tol-pal system protei 34.2 3.3E+02 0.007 26.2 9.5 41 362-402 60-100 (263)
265 KOG4809|consensus 33.8 6.1E+02 0.013 27.0 32.0 15 536-550 540-554 (654)
266 PRK10698 phage shock protein P 33.6 4E+02 0.0087 24.9 22.8 43 339-381 28-70 (222)
267 KOG2264|consensus 33.0 3.9E+02 0.0084 28.5 10.0 13 453-465 134-146 (907)
268 PF14988 DUF4515: Domain of un 32.9 4E+02 0.0086 24.6 28.8 40 286-325 19-58 (206)
269 PF02403 Seryl_tRNA_N: Seryl-t 32.7 2.6E+02 0.0057 22.4 9.6 62 8-69 32-96 (108)
270 KOG1655|consensus 32.6 3.8E+02 0.0082 24.3 17.6 51 428-478 99-150 (218)
271 PF04420 CHD5: CHD5-like prote 32.2 1.4E+02 0.0031 26.2 6.2 45 510-554 40-89 (161)
272 PF11180 DUF2968: Protein of u 31.7 3.9E+02 0.0085 24.2 12.8 89 377-465 98-186 (192)
273 PF05377 FlaC_arch: Flagella a 31.5 1.9E+02 0.004 20.3 5.9 35 515-549 12-46 (55)
274 PF10267 Tmemb_cc2: Predicted 31.5 5.9E+02 0.013 26.2 14.4 45 149-193 220-264 (395)
275 PF01166 TSC22: TSC-22/dip/bun 31.4 56 0.0012 23.0 2.6 29 529-557 12-40 (59)
276 PF10234 Cluap1: Clusterin-ass 31.2 4.9E+02 0.011 25.1 19.2 86 394-479 172-257 (267)
277 PF12709 Kinetocho_Slk19: Cent 31.0 2.5E+02 0.0055 21.8 8.8 30 524-553 49-78 (87)
278 KOG4348|consensus 30.9 2.5E+02 0.0054 28.7 8.0 50 286-339 570-619 (627)
279 KOG0999|consensus 30.6 6.9E+02 0.015 26.7 64.9 30 480-509 635-664 (772)
280 PF10046 BLOC1_2: Biogenesis o 30.0 2.8E+02 0.0062 22.0 12.5 38 510-547 59-96 (99)
281 PF04859 DUF641: Plant protein 30.0 1.8E+02 0.004 24.6 6.0 51 171-221 78-128 (131)
282 KOG4687|consensus 29.7 5E+02 0.011 24.8 19.9 30 507-536 178-207 (389)
283 PF10168 Nup88: Nuclear pore c 29.5 8.5E+02 0.019 27.4 22.7 23 459-481 690-712 (717)
284 PF15254 CCDC14: Coiled-coil d 29.4 8.5E+02 0.018 27.3 24.8 54 477-533 478-531 (861)
285 PF14992 TMCO5: TMCO5 family 29.2 5.4E+02 0.012 25.0 15.2 38 33-70 11-48 (280)
286 PRK10803 tol-pal system protei 29.0 4.4E+02 0.0094 25.4 9.4 43 388-430 58-100 (263)
287 PRK04325 hypothetical protein; 29.0 2.5E+02 0.0054 21.0 8.4 47 222-268 9-55 (74)
288 PF04949 Transcrip_act: Transc 28.8 3.8E+02 0.0082 23.1 16.9 58 396-453 82-139 (159)
289 PF05335 DUF745: Protein of un 28.3 4.5E+02 0.0098 23.8 17.3 25 365-389 69-93 (188)
290 PRK13729 conjugal transfer pil 28.2 2.9E+02 0.0062 29.0 8.3 44 223-266 77-120 (475)
291 TIGR01010 BexC_CtrB_KpsE polys 28.1 6.3E+02 0.014 25.4 16.3 17 422-438 245-261 (362)
292 PF06810 Phage_GP20: Phage min 27.9 4.1E+02 0.0089 23.2 9.1 65 455-537 14-82 (155)
293 PRK00846 hypothetical protein; 27.9 2.7E+02 0.0059 21.1 8.3 49 444-492 10-58 (77)
294 PF01920 Prefoldin_2: Prefoldi 27.5 3.1E+02 0.0067 21.6 11.0 34 123-156 65-98 (106)
295 KOG1850|consensus 27.0 6.2E+02 0.013 24.9 41.6 42 227-268 114-155 (391)
296 PRK09841 cryptic autophosphory 26.7 9.6E+02 0.021 27.0 17.5 41 511-551 357-397 (726)
297 PF15372 DUF4600: Domain of un 25.9 4E+02 0.0087 22.4 13.1 51 408-458 54-104 (129)
298 PF05276 SH3BP5: SH3 domain-bi 25.8 5.8E+02 0.012 24.2 31.1 34 341-374 76-109 (239)
299 TIGR02449 conserved hypothetic 25.6 2.7E+02 0.0059 20.3 8.5 39 10-48 5-43 (65)
300 PF10458 Val_tRNA-synt_C: Valy 24.9 2.7E+02 0.0059 20.1 6.9 26 187-212 4-29 (66)
301 PF04859 DUF641: Plant protein 24.9 2.9E+02 0.0062 23.4 6.3 19 424-442 106-124 (131)
302 PF02994 Transposase_22: L1 tr 24.6 2.8E+02 0.0061 28.2 7.6 37 339-375 148-184 (370)
303 COG4477 EzrA Negative regulato 24.3 8.9E+02 0.019 25.8 47.4 60 394-453 350-409 (570)
304 PF04508 Pox_A_type_inc: Viral 23.5 1.3E+02 0.0028 16.9 2.7 18 532-549 2-19 (23)
305 PF15254 CCDC14: Coiled-coil d 23.3 1.1E+03 0.024 26.5 21.6 36 425-460 507-542 (861)
306 PF08172 CASP_C: CASP C termin 23.2 6.6E+02 0.014 23.9 11.9 48 220-267 84-131 (248)
307 PF08232 Striatin: Striatin fa 23.2 4.7E+02 0.01 22.2 9.3 48 219-266 22-69 (134)
308 KOG1937|consensus 23.2 8.6E+02 0.019 25.3 31.1 30 50-79 289-318 (521)
309 PRK11519 tyrosine kinase; Prov 22.6 1.1E+03 0.024 26.4 17.2 28 515-542 368-395 (719)
310 PF09787 Golgin_A5: Golgin sub 22.4 9.7E+02 0.021 25.6 36.5 21 387-407 284-304 (511)
311 PF14992 TMCO5: TMCO5 family 22.2 7.3E+02 0.016 24.1 16.3 25 435-459 118-142 (280)
312 PRK13729 conjugal transfer pil 22.1 3.1E+02 0.0068 28.7 7.2 51 20-70 70-120 (475)
313 PF07111 HCR: Alpha helical co 22.1 1.1E+03 0.024 26.1 62.0 461 15-489 151-653 (739)
314 PF13747 DUF4164: Domain of un 21.3 4E+02 0.0087 20.8 12.3 49 218-266 35-83 (89)
315 KOG0982|consensus 20.5 9.5E+02 0.021 24.8 31.9 51 220-270 220-270 (502)
316 KOG4797|consensus 20.3 1.8E+02 0.004 23.3 4.0 32 526-557 62-93 (123)
No 1
>KOG0161|consensus
Probab=100.00 E-value=3.5e-35 Score=331.99 Aligned_cols=529 Identities=47% Similarity=0.650 Sum_probs=495.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhhhhhhhh
Q psy8739 6 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESSGWV 85 (558)
Q Consensus 6 ~~~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~e~~~~~ 85 (558)
..-.++..+.++...+++.......+.....+++.++.++...+.+.+..+..+..++.....++..+...+.
T Consensus 902 ~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~------- 974 (1930)
T KOG0161|consen 902 EKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEIN------- 974 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 4556788888899999999999999999999999999999999999999999999999998888876544222
Q ss_pred hhhhhchhhhhhhhhchhhhhccchhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h
Q psy8739 86 EELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLE---G 162 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~---~ 162 (558)
.+++.+.++.++++ .++..+..+.+.+..+++++..+.+.+.+|+++++++...++... +
T Consensus 975 --------------~~~e~~~kL~kekk---~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~ 1037 (1930)
T KOG0161|consen 975 --------------SLDENISKLSKEKK---ELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRM 1037 (1930)
T ss_pred --------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554 357788999999999999999999999999999999999999764 8
Q ss_pred hHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 163 DVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAER 242 (558)
Q Consensus 163 ~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~ 242 (558)
++++.++++++++...++.+..+...+..+...+.+.+.++..+..++++.......+++.++.|+++|.+|.++++.++
T Consensus 1038 e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1038 ELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAER 1117 (1930)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHH
Q psy8739 243 QSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQ 322 (558)
Q Consensus 243 ~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~~~e~~~~~e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L~~~ 322 (558)
..+.++++.+++|..++.++..++++.++.+...++..++++.++..++..+++....++..+..+|..|...+.++..+
T Consensus 1118 ~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~q 1197 (1930)
T KOG0161|consen 1118 ASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQ 1197 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888899988888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHH
Q psy8739 323 IDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSD 402 (558)
Q Consensus 323 le~~~~~k~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~ 402 (558)
++++.+.+..+++++..++.++.++..++..+...+.+++..++.++.++.+++..+++..+.+.++..+..++..++..
T Consensus 1198 le~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~ 1277 (1930)
T KOG0161|consen 1198 LEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEE 1277 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 403 LLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANA 482 (558)
Q Consensus 403 l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~ 482 (558)
+..++++.+..++.+.+....+..++.+++.+++...+.+..+...++.++.++..++.++++....+..+...+++++.
T Consensus 1278 l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~ 1357 (1930)
T KOG0161|consen 1278 LSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANA 1357 (1930)
T ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHhHHhhhhHHHHHHHhhh-----------------------------------------------------
Q psy8739 483 DAQLWRTKYESEGVARAEELEESKSEE----------------------------------------------------- 509 (558)
Q Consensus 483 e~~~~k~kle~~~~~~~~~~ee~k~~~----------------------------------------------------- 509 (558)
++.+|+.++++.+....+++++.++++
T Consensus 1358 e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~ 1437 (1930)
T KOG0161|consen 1358 ELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQ 1437 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988899999998776
Q ss_pred -----------hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8739 510 -----------RRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA 558 (558)
Q Consensus 510 -----------~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~~l~ 558 (558)
.....+..+++.++.+.+.+++++.++++.++++.+.++.+.+++++|+
T Consensus 1438 k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~ 1497 (1930)
T KOG0161|consen 1438 KRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLS 1497 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888899999999999999999999999999999999999998763
No 2
>KOG0161|consensus
Probab=100.00 E-value=1.7e-26 Score=262.10 Aligned_cols=468 Identities=27% Similarity=0.382 Sum_probs=405.7
Q ss_pred chHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhhhh
Q psy8739 2 ATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEES 81 (558)
Q Consensus 2 ~~e~~~~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~e~ 81 (558)
+++.+++.++.++.+++.++++..+.++++..+..++.+++.++.+++++.+..+..+.+.+..+..++.++++.++.++
T Consensus 1235 ~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~ 1314 (1930)
T KOG0161|consen 1235 DLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEET 1314 (1930)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhchhhhhhhhhchhhhhccchhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 82 SGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLE 161 (558)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~ 161 (558)
+.+.. +.+.+.+++.+ +..|+.++++..+....|.+...++..++.+|+.+++...
T Consensus 1315 r~k~~-------l~~~l~~l~~e-----------------~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~ 1370 (1930)
T KOG0161|consen 1315 REKSA-------LENALRQLEHE-----------------LDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEV 1370 (1930)
T ss_pred HHHHH-------HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98864 45566665544 5889999999999999999999999999999999998752
Q ss_pred ----hhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHH--------
Q psy8739 162 ----GDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQA-------- 229 (558)
Q Consensus 162 ----~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~-------- 229 (558)
.+++..++++...+..++..+..+......+++.+.+++.++.++...++........++++.+.+..
T Consensus 1371 ~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~ 1450 (1930)
T KOG0161|consen 1371 LQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKK 1450 (1930)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888888888888888888888888888888777766655555555444332
Q ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhH-HHHHH
Q psy8739 230 --------------------RIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKR-EAEMS 288 (558)
Q Consensus 230 --------------------~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~~~e~~~~~-e~el~ 288 (558)
.+..+...++........+.+.++.+..++.++..++.+ .|++.++++..+++ +.++.
T Consensus 1451 ~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e-~~k~v~elek~~r~le~e~~ 1529 (1930)
T KOG0161|consen 1451 LEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDE-GGKRVHELEKEKRRLEQEKE 1529 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 222233333444444557888899999999999999999 56788899888887 88888
Q ss_pred HHHHHHHHHHHhhH----------------------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy8739 289 KLRRDLEEANIQHE----------------------------STLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAA 340 (558)
Q Consensus 289 ~lk~~le~~~~~~~----------------------------~~~~~lr~~~~~~i~~L~~~le~~~~~k~~le~~~~~l 340 (558)
.|+..|+++...+. ++++..++.|+..|..++..++...+.+..+-+.++++
T Consensus 1530 elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkl 1609 (1930)
T KOG0161|consen 1530 ELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKL 1609 (1930)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhh
Confidence 88888877664332 34556778889999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 341 HNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKI 420 (558)
Q Consensus 341 e~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~ 420 (558)
+.++.+++..++.+++...++.+.++++...+.+++..+++......++.+++..++..+..+...++++...+..+.+.
T Consensus 1610 e~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Ra 1689 (1930)
T KOG0161|consen 1610 EGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERA 1689 (1930)
T ss_pred hcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy8739 421 KISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESE 494 (558)
Q Consensus 421 ~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~ 494 (558)
++.++.++.++...+......+..+....+.++.++..++..+++.............++..++..+...+..+
T Consensus 1690 rr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~E 1763 (1930)
T KOG0161|consen 1690 RRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKE 1763 (1930)
T ss_pred HHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888777777777777777777666544
No 3
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.97 E-value=1.1e-32 Score=303.07 Aligned_cols=466 Identities=29% Similarity=0.417 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhhhh
Q psy8739 2 ATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEES 81 (558)
Q Consensus 2 ~~e~~~~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~e~ 81 (558)
++++.++.++.++.+++.++++..+.++++...+.+|.+++.+|..++++.+..+..+.+.+.++.++|.+++..+++++
T Consensus 177 ~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEt 256 (859)
T PF01576_consen 177 EAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEET 256 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhchhhhhhhhhchhhhhccchhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 82 SGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLE 161 (558)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~ 161 (558)
+.+.. +.+.+.+++.+ +..|++.++++......+.+.+.+++.+|.+|+.+|+...
T Consensus 257 r~k~~-------L~~~l~~le~e-----------------~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~ 312 (859)
T PF01576_consen 257 RAKQA-------LEKQLRQLEHE-----------------LEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEA 312 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhh-------hHHHHHHHHHH-----------------HHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 98864 34555555444 5788899999999999999999999999999999998753
Q ss_pred ----hhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHH-------
Q psy8739 162 ----GDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQAR------- 230 (558)
Q Consensus 162 ----~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~------- 230 (558)
..++.+|++|...+.++...++.....+..+++.+.++..++.++...++...+.+..+.++.+.|...
T Consensus 313 ~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~ 392 (859)
T PF01576_consen 313 EQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAK 392 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999998888888777766666665444443
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhH-HHHHH
Q psy8739 231 ---------------------IEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKR-EAEMS 288 (558)
Q Consensus 231 ---------------------i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~~~e~~~~~-e~el~ 288 (558)
+..|...++........+.+.++.|..+|.++..++++ +|.+.+.++..++. +.++.
T Consensus 393 ~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~-~~k~v~eLek~kr~LE~e~~ 471 (859)
T PF01576_consen 393 VEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDD-AGKSVHELEKAKRRLEQEKE 471 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhh-hccchHHHHHHHHHHHHHHH
Confidence 33344444444555557788888888889888888888 55667777776665 66666
Q ss_pred HHHHHHHHHH----------------------------HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy8739 289 KLRRDLEEAN----------------------------IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAA 340 (558)
Q Consensus 289 ~lk~~le~~~----------------------------~~~~~~~~~lr~~~~~~i~~L~~~le~~~~~k~~le~~~~~l 340 (558)
.++..|++.. ...+.+++..|+.|+..|..|+..|+...+.++.+.+.+++|
T Consensus 472 El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKL 551 (859)
T PF01576_consen 472 ELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKL 551 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6665555443 333456778899999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 341 HNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKI 420 (558)
Q Consensus 341 e~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~ 420 (558)
+.+|.+|...+++.++...++.+.++++...+.+++..+++..+....+...+..++..+..+...++++...+..+.+.
T Consensus 552 E~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~ 631 (859)
T PF01576_consen 552 ESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERA 631 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 421 KISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 421 ~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
.+.++..+.++...+..+...+.++....+.++.++..|...+++.......+...+.++..++..+...+-
T Consensus 632 rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~ 703 (859)
T PF01576_consen 632 RKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELR 703 (859)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988777777666666666666655554
No 4
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.96 E-value=1.3e-31 Score=294.57 Aligned_cols=373 Identities=58% Similarity=0.804 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 186 ERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGER 265 (558)
Q Consensus 186 ~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~ 265 (558)
...+..++..+.+.++++..+..+++++.+.+..+++.++.|+++|.+|+++|+.++..+.++++.+++|..++++|...
T Consensus 3 ~~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~ 82 (859)
T PF01576_consen 3 ERQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKER 82 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy8739 266 LEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETN 345 (558)
Q Consensus 266 l~~~~~~~~~~~e~~~~~e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L~~~le~~~~~k~~le~~~~~le~e~~ 345 (558)
|++++|.+.++.+..++++.++..|+..|++....|+..+..+|++|...|.+|..+|+.+.+.+..+++.+..+..+++
T Consensus 83 Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~ 162 (859)
T PF01576_consen 83 LEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELD 162 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 346 NTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLT 425 (558)
Q Consensus 346 ~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~ 425 (558)
++...++.+.+.+..+++.++.++.++.+++..+++..+.++++.....++..++.+|..++++....+..+.+....+.
T Consensus 163 dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~ 242 (859)
T PF01576_consen 163 DLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLE 242 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHH
Q psy8739 426 TQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEES 505 (558)
Q Consensus 426 ~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~ 505 (558)
.+|.+++..++++.+.+..+...++.++.++..+..++++...++..+...+++++.++..|+.+|+.++..+.+.++++
T Consensus 243 ~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEea 322 (859)
T PF01576_consen 243 SQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEA 322 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh----------------------------------------------------------------hhHHHHHHHHHH
Q psy8739 506 KSEE----------------------------------------------------------------RRVDDLAAELDA 521 (558)
Q Consensus 506 k~~~----------------------------------------------------------------~~~~~l~~~~~~ 521 (558)
++++ ..+..+...++.
T Consensus 323 KKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~ 402 (859)
T PF01576_consen 323 KKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDA 402 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9877 567778888999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8739 522 SQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA 558 (558)
Q Consensus 522 ~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~~l~ 558 (558)
++.+++.++++++.+++.|+++...+..+.++++.|+
T Consensus 403 ~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~ 439 (859)
T PF01576_consen 403 AQREARELETELFKLKNELEELQEQLEELERENKQLQ 439 (859)
T ss_dssp -------------------------------------
T ss_pred HHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998874
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=99.65 E-value=7.1e-09 Score=118.23 Aligned_cols=45 Identities=33% Similarity=0.523 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 223 QIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLE 267 (558)
Q Consensus 223 ~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~ 267 (558)
.+..++..+..+..++................+..++.++...+.
T Consensus 357 ~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 357 RAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444444444444444444444444444444444443
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=99.58 E-value=1e-07 Score=108.83 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=20.2
Q ss_pred HHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHH
Q psy8739 31 FDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTK 74 (558)
Q Consensus 31 ~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~ 74 (558)
+...+..++.++.++...+......+..+......+...+.++.
T Consensus 204 l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~ 247 (880)
T PRK02224 204 LHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHE 247 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544444444444444443333333
No 7
>KOG0977|consensus
Probab=99.56 E-value=6.1e-11 Score=120.64 Aligned_cols=342 Identities=19% Similarity=0.237 Sum_probs=223.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8739 121 YSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKD 200 (558)
Q Consensus 121 ~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~ 200 (558)
++..|+++|..+.+++.+|+.++.+|+.+|..++..+. .+....+-.++.++..+..-+++..+....++..+.++.
T Consensus 43 El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~---~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~ 119 (546)
T KOG0977|consen 43 ELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVG---RETSGIKAKYEAELATARKLLDETARERAKLEIEITKLR 119 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 57999999999999999999999999999999998876 333457788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy8739 201 KEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELN 280 (558)
Q Consensus 201 ~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~~~e~~ 280 (558)
.++.+++..++.....+......+..+...+..++.++...+.....++-+.+.|..+...|...|..+......+.-..
T Consensus 120 ~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr 199 (546)
T KOG0977|consen 120 EELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR 199 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888899999999999999888888777777777777777777776666655422111111111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH-HHHH
Q psy8739 281 KKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLA-REKA 359 (558)
Q Consensus 281 ~~~e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~~-~~~~ 359 (558)
...+..+..|...|.-....|..++...+..+..... ...+.-+ +.+|...+.++.++++... ..+.
T Consensus 200 ~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t---------~~~r~~F---~~eL~~Ai~eiRaqye~~~~~nR~ 267 (546)
T KOG0977|consen 200 VDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT---------ADNREYF---KNELALAIREIRAQYEAISRQNRK 267 (546)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc---------ccchHHH---HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 1114455555555555555554444444333322220 0111111 1245556666677766643 2333
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 360 ATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEG 439 (558)
Q Consensus 360 ~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~ 439 (558)
+++. .+...|.+++....-.....+...+.+..+...+..|..++ .+++.....+..+|.+|+.++++..
T Consensus 268 diE~---~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~kl-------selE~~n~~L~~~I~dL~~ql~e~~ 337 (546)
T KOG0977|consen 268 DIES---WYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKL-------SELESRNSALEKRIEDLEYQLDEDQ 337 (546)
T ss_pred HHHH---HHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhh-------ccccccChhHHHHHHHHHhhhhhhh
Confidence 3333 45566666665444444444555555555555555555444 4455555556666666666666654
Q ss_pred HHHHH----HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy8739 440 RERAT----LLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESE 494 (558)
Q Consensus 440 ~~~~~----l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~ 494 (558)
+.... -...+..+..+|..+..+|+.+.. ..-.|+.+|+.|+.-|+++
T Consensus 338 r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD-------~ki~Ld~EI~~YRkLLege 389 (546)
T KOG0977|consen 338 RSFEQALNDKDAEIAKMREECQQLSVELQKLLD-------TKISLDAEIAAYRKLLEGE 389 (546)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-------hHhHHHhHHHHHHHHhccc
Confidence 43222 223444445555555555554444 3445788899999888753
No 8
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=99.50 E-value=1.6e-09 Score=108.01 Aligned_cols=303 Identities=23% Similarity=0.347 Sum_probs=177.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8739 121 YSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKD 200 (558)
Q Consensus 121 ~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~ 200 (558)
.+..|+++|..+.+++..|+..+..|+.+|..+..... ......+..++.++..++..++.+......+...+..+.
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~---~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~ 81 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKG---EEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLK 81 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccc---ccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHH
Confidence 46899999999999999999999999999999988864 233457788899999999999999999988888888888
Q ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy8739 201 KEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELN 280 (558)
Q Consensus 201 ~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~~~e~~ 280 (558)
.++.+++.+++.....+.. ++..|..+...++.+...+..++.
T Consensus 82 ~e~~~~r~k~e~e~~~~~~-------le~el~~lrk~ld~~~~~r~~le~------------------------------ 124 (312)
T PF00038_consen 82 EELEDLRRKYEEELAERKD-------LEEELESLRKDLDEETLARVDLEN------------------------------ 124 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhhhhhhhhHhHHHH------------------------------
Confidence 8888888888776433333 333333333333333333222222
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHhHHHHHHHHHHHHH-HHH
Q psy8739 281 KKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAE-HERNAAHNETNNTRAAADQLA-REK 358 (558)
Q Consensus 281 ~~~e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L~~~le~~~~~k~~le-~~~~~le~e~~~l~~~le~~~-~~~ 358 (558)
.+..|+.++..... .|...|..|+.++. ...-..+. -....|...+.++..+++... +.+
T Consensus 125 -----~i~~L~eEl~fl~~-----------~heeEi~~L~~~~~--~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~ 186 (312)
T PF00038_consen 125 -----QIQSLKEELEFLKQ-----------NHEEEIEELREQIQ--SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNR 186 (312)
T ss_dssp -----HHHHHHHHHHHHHH-----------HHHHHHHTTSTT------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh-----------hhhhhhhhhhhccc--cccceeecccccccchhhhhhHHHHHHHHHhhhh
Confidence 22223333222222 22222222222221 00000000 011234444444444444322 222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 359 AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEE 438 (558)
Q Consensus 359 ~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~ 438 (558)
.+++. .+...+.++........ .....+..++..++..+..+...+..+......++..|.++...+...
T Consensus 187 ~e~e~---~y~~k~~~l~~~~~~~~-------~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~ 256 (312)
T PF00038_consen 187 EELEE---WYQSKLEELRQQSEKSS-------EELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEE 256 (312)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhh---hcccccccccccccccc-------cccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHH
Confidence 23222 34444544444443333 333344444555555555555555555555666777777777666543
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy8739 439 GRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESE 494 (558)
Q Consensus 439 ~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~ 494 (558)
...+...+..++.++..++..+.........|....-.|+.+|+.|++-|+++
T Consensus 257 ---~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLEgE 309 (312)
T PF00038_consen 257 ---REEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLEGE 309 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ---HHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCc
Confidence 45566677778888888888888888888888888888999999999999753
No 9
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.35 E-value=2.3e-06 Score=92.62 Aligned_cols=95 Identities=25% Similarity=0.347 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 174 DLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRA 253 (558)
Q Consensus 174 el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~ 253 (558)
...+++..++-+.......+.....|+.+++.++.+++.....++.....+..++.....+..++...+......+....
T Consensus 316 ~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~ 395 (775)
T PF10174_consen 316 QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKIN 395 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566666777777777778888888888888888887777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHh
Q psy8739 254 DLARELEELGERLEE 268 (558)
Q Consensus 254 ~l~~el~~l~~~l~~ 268 (558)
.|...|+.|...+.+
T Consensus 396 ~Lq~kie~Lee~l~e 410 (775)
T PF10174_consen 396 VLQKKIENLEEQLRE 410 (775)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776654
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.34 E-value=7.7e-06 Score=96.59 Aligned_cols=8 Identities=13% Similarity=0.588 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy8739 316 VSEMGEQI 323 (558)
Q Consensus 316 i~~L~~~l 323 (558)
+..++..+
T Consensus 746 ip~l~~~l 753 (1311)
T TIGR00606 746 IPELRNKL 753 (1311)
T ss_pred chhHHHHH
Confidence 33333333
No 11
>KOG4674|consensus
Probab=99.33 E-value=6e-06 Score=94.86 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy8739 513 DDLAAELDASQKECRNYSTELFRLKGAYEEAQEQ 546 (558)
Q Consensus 513 ~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~ 546 (558)
..+...++....++.-|..+...|+.+..++...
T Consensus 1267 ~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1267 KELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444455555444444
No 12
>KOG4674|consensus
Probab=99.33 E-value=6.3e-06 Score=94.70 Aligned_cols=47 Identities=15% Similarity=0.356 Sum_probs=29.3
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 446 LGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 446 ~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
...+..+..++.-++..+.+...........+..+..++..|+.++.
T Consensus 1249 ~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q 1295 (1822)
T KOG4674|consen 1249 RDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQ 1295 (1822)
T ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555566677778888888888886
No 13
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.29 E-value=5.5e-06 Score=89.80 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy8739 181 AVADLERNKKELEQTIQRKDKEIASL 206 (558)
Q Consensus 181 ~~~~~~~~~~~le~~~~~l~~el~~l 206 (558)
.+.+....+..++..+..+..+...+
T Consensus 184 ~~~~~e~~~~~le~lle~~e~~~~~~ 209 (775)
T PF10174_consen 184 RIREAEARIMRLESLLERKEKEHMEA 209 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44455555555555555555555433
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=3.1e-05 Score=91.59 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=22.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8739 336 ERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDE 381 (558)
Q Consensus 336 ~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e 381 (558)
.+..++..+.++...+..+......+...+..+...+..+...+..
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE 927 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3344555555555555555544444444444444444444444433
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.19 E-value=4.2e-05 Score=90.60 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 514 DLAAELDASQKECRNYS-------TELFRLKGAYEEAQEQLEAVRRENK 555 (558)
Q Consensus 514 ~l~~~~~~~~~~~~~~e-------~e~~~l~~~l~e~~~~~~~l~~~~~ 555 (558)
.+...+..+...+..+. .+|..+..++.++..++.++.....
T Consensus 955 ~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~ 1003 (1164)
T TIGR02169 955 DVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERK 1003 (1164)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443 2445555555555555554444433
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.10 E-value=8.9e-05 Score=86.65 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8739 514 DLAAELDASQKECRNYST-------ELFRLKGAYEEAQEQLEAVRRENKNL 557 (558)
Q Consensus 514 ~l~~~~~~~~~~~~~~e~-------e~~~l~~~l~e~~~~~~~l~~~~~~l 557 (558)
.+...+..++..+..+.+ +|..+..+++++...+.++...+..|
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l 996 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL 996 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556655555544 67777777777777777766665544
No 17
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.90 E-value=8.9e-05 Score=73.89 Aligned_cols=109 Identities=23% Similarity=0.324 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8739 122 SQDTVDRLQQEEDA-RNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKD 200 (558)
Q Consensus 122 ~~~l~~~l~~~~~~-~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~ 200 (558)
...|...+...... ..........++.++.+++..++.. ...+.++..++..+...+.++..++......+..++
T Consensus 27 N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~----~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le 102 (312)
T PF00038_consen 27 NKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDL----SKEKARLELEIDNLKEELEDLRRKYEEELAERKDLE 102 (312)
T ss_dssp HHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhH----HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333 2333344555666666666666433 356777888888888888888888888888888899
Q ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 201 KEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAE 241 (558)
Q Consensus 201 ~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~ 241 (558)
.++..++..++........+ +.+|..|..++...
T Consensus 103 ~el~~lrk~ld~~~~~r~~l-------e~~i~~L~eEl~fl 136 (312)
T PF00038_consen 103 EELESLRKDLDEETLARVDL-------ENQIQSLKEELEFL 136 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhhHhHH-------HHHHHHHHHHHHHH
Confidence 99999998888776655544 44555555555443
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.88 E-value=0.00057 Score=80.04 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy8739 177 LTQEAVADLERNKKELEQTIQRKDKEIASLT 207 (558)
Q Consensus 177 ~~~~~~~~~~~~~~~le~~~~~l~~el~~l~ 207 (558)
.+..++..+......+......+..++.++.
T Consensus 401 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 431 (1163)
T COG1196 401 ELKREIESLEERLERLSERLEDLKEELKELE 431 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=98.86 E-value=0.00053 Score=78.64 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8739 250 KQRADLARELEELGER 265 (558)
Q Consensus 250 ~~~~~l~~el~~l~~~ 265 (558)
.....+...+..+...
T Consensus 412 ~~~~~~~~~i~eL~~~ 427 (880)
T PRK03918 412 ARIGELKKEIKELKKA 427 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444444433
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.78 E-value=0.00037 Score=71.94 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy8739 511 RVDDLAAELDASQKECRNYSTELFRLKGAYEEA 543 (558)
Q Consensus 511 ~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~ 543 (558)
.++-++.+.+.+..+..++-..+..|..+++..
T Consensus 425 ~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 425 SLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555555555554444433
No 21
>KOG0612|consensus
Probab=98.78 E-value=0.00066 Score=74.86 Aligned_cols=280 Identities=17% Similarity=0.253 Sum_probs=153.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 171 IEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEK 250 (558)
Q Consensus 171 le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~ 250 (558)
+..++......+......+..+...+..++.++..++............+....+.+.....++..+.+.....+.....
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e 571 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKE 571 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhh
Confidence 45666666667777777777777777777777777766555555555555555566666666666555555444443333
Q ss_pred HHHHHHHHHH---HHHHHHHhhcCC----------CHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q psy8739 251 QRADLARELE---ELGERLEEAGGA----------TSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVS 317 (558)
Q Consensus 251 ~~~~l~~el~---~l~~~l~~~~~~----------~~~~~e~~~~~e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~ 317 (558)
-.+.++..+. ++...+...... ....++..++...++......++.....+........... ..+.
T Consensus 572 ~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l-~k~~ 650 (1317)
T KOG0612|consen 572 LSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKEL-LKVE 650 (1317)
T ss_pred hhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHH-HHHH
Confidence 3333333332 222211111000 0000111111111111111111111111111111100000 0111
Q ss_pred HHHHHHHHHHHHHHHHHH--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q psy8739 318 EMGEQIDQLNKLKTKAEH--ERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKK 395 (558)
Q Consensus 318 ~L~~~le~~~~~k~~le~--~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~ 395 (558)
+++..... .-+..++ ....++..+..+..+++.+......+ ++..-+.++.++...+.+....+..+......
T Consensus 651 el~r~~~e---~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~ 725 (1317)
T KOG0612|consen 651 ELKRENQE---RISDSEKEALEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLE 725 (1317)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 11111100 0011111 23344444444555555554444433 23333778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy8739 396 LSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDI 456 (558)
Q Consensus 396 le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~ 456 (558)
+..++..|...+-........+.+....+...+..|+..++.+...+..+...++....++
T Consensus 726 i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~ 786 (1317)
T KOG0612|consen 726 IEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEV 786 (1317)
T ss_pred HHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhh
Confidence 9999999999888888888888999999999999999999999999999988887444433
No 22
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.69 E-value=0.001 Score=71.67 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=25.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHH
Q psy8739 337 RNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDF 389 (558)
Q Consensus 337 ~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l 389 (558)
...+...++.|-..++....++...++....+...+..+..........+..+
T Consensus 284 ~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l 336 (569)
T PRK04778 284 NEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRV 336 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555544444444444433333
No 23
>KOG0977|consensus
Probab=98.69 E-value=0.00034 Score=72.19 Aligned_cols=112 Identities=13% Similarity=0.223 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHH
Q psy8739 424 LTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELE 503 (558)
Q Consensus 424 l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~e 503 (558)
+...|.+++....-.......+.+.+..+...+..|+.++.+++.....|...|..|+..+..-++.|+..+.....++.
T Consensus 273 Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~ 352 (546)
T KOG0977|consen 273 YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIA 352 (546)
T ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence 34455555544444444455566667777777777777777777777777777777777777766666644444444444
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy8739 504 ESKSEERRVDDLAAELDASQKECRNYSTELFRLKG 538 (558)
Q Consensus 504 e~k~~~~~~~~l~~~~~~~~~~~~~~e~e~~~l~~ 538 (558)
.++ ..+..+..++..+-.-.-.|..++...+.
T Consensus 353 ~mR---eec~~l~~Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 353 KMR---EECQQLSVELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred HHH---HHHHHHHHHHHHhhchHhHHHhHHHHHHH
Confidence 444 23444444444444444444444444443
No 24
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.62 E-value=0.0002 Score=67.90 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 407 LEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQL 486 (558)
Q Consensus 407 l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~ 486 (558)
++.+...+..+...+..+.+.+..+.............+...++.|...+..+-..++........|+..+..+..++..
T Consensus 136 ~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 136 AEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444433333444555555555555555555555666666666666666666666
Q ss_pred HHHhhH
Q psy8739 487 WRTKYE 492 (558)
Q Consensus 487 ~k~kle 492 (558)
|+.++.
T Consensus 216 ~k~~~~ 221 (237)
T PF00261_consen 216 EKEKYK 221 (237)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666664
No 25
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.58 E-value=0.00016 Score=68.54 Aligned_cols=79 Identities=24% Similarity=0.373 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhhhhhh
Q psy8739 5 KIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESSG 83 (558)
Q Consensus 5 ~~~~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~e~~~ 83 (558)
++...+...+.....++......+............++..|.+.+..++..+.............|.++...+++..++
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~ 79 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERA 79 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777777777777777777776666666655566666666655555554433
No 26
>KOG0971|consensus
Probab=98.57 E-value=0.002 Score=68.80 Aligned_cols=303 Identities=20% Similarity=0.239 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhH-HHHHHHHHHHHHHHHHhhHHH
Q psy8739 226 ELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKR-EAEMSKLRRDLEEANIQHEST 304 (558)
Q Consensus 226 ~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~~~e~~~~~-e~el~~lk~~le~~~~~~~~~ 304 (558)
.|..++.+|.+.|+..+-.+..-.... .+++.+..++.... .-+.+ ......|+.+|-++.......
T Consensus 228 eLr~QvrdLtEkLetlR~kR~EDk~Kl----~Elekmkiqleqlq--------EfkSkim~qqa~Lqrel~raR~e~kea 295 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLKRAEDKAKL----KELEKMKIQLEQLQ--------EFKSKIMEQQADLQRELKRARKEAKEA 295 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHH----HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378889999999988876654322111 22333333333211 01111 233445555555555433322
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q psy8739 305 LANLRKKHNDAVSEMGEQIDQLNKLKT-------KAEHERNAAHNETNNTRAAADQLAREKAAT--------EKIAKQLQ 369 (558)
Q Consensus 305 ~~~lr~~~~~~i~~L~~~le~~~~~k~-------~le~~~~~le~e~~~l~~~le~~~~~~~~~--------e~~~~~le 369 (558)
+ .++.+|...+.++...++-..=.+. .+..+...+...+++|...++-+..+..+- .-+.+.++
T Consensus 296 q-e~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlE 374 (1243)
T KOG0971|consen 296 Q-EAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLE 374 (1243)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHH
Confidence 2 3445566666666665543221121 222333333333444444444333222110 01233333
Q ss_pred HHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q psy8739 370 HQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRE---RATLL 446 (558)
Q Consensus 370 ~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~---~~~l~ 446 (558)
.+-..|+..+--++...+.-.....++..++.....++.++......+.+....++..|.+++.+++..--+ ...+-
T Consensus 375 qqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLt 454 (1243)
T KOG0971|consen 375 QQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLT 454 (1243)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 333333333333333333333444455555555666666666666666666666677777777766643211 11111
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy8739 447 GKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKEC 526 (558)
Q Consensus 447 ~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~ 526 (558)
...-.++..+..|...+.+++. . ..++.++......++. .+-++++.++ ..+.++...+++++.-+
T Consensus 455 dknlnlEekVklLeetv~dlEa-l-------ee~~EQL~Esn~ele~---DLreEld~~~---g~~kel~~r~~aaqet~ 520 (1243)
T KOG0971|consen 455 DKNLNLEEKVKLLEETVGDLEA-L-------EEMNEQLQESNRELEL---DLREELDMAK---GARKELQKRVEAAQETV 520 (1243)
T ss_pred hhccCHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHHH---HHHHHHHHHh---hHHHHHHHHHHHHHHHH
Confidence 1222233444444333333321 1 1222233333333332 1222333333 45577888889999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 527 RNYSTELFRLKGAYEEAQEQLEAVRRENK 555 (558)
Q Consensus 527 ~~~e~e~~~l~~~l~e~~~~~~~l~~~~~ 555 (558)
-++..-|.++|..+.-+.+++..+..+..
T Consensus 521 yDrdqTI~KfRelva~Lqdqlqe~~dq~~ 549 (1243)
T KOG0971|consen 521 YDRDQTIKKFRELVAHLQDQLQELTDQQE 549 (1243)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999989888888876554
No 27
>KOG0996|consensus
Probab=98.51 E-value=0.0037 Score=68.91 Aligned_cols=96 Identities=14% Similarity=0.237 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 173 GDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQR 252 (558)
Q Consensus 173 ~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~ 252 (558)
+++..++.++..+........+....+..-+..+...+.+....+..+...+..+...+.+...++...+..-..+....
T Consensus 500 ~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~ 579 (1293)
T KOG0996|consen 500 SELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQL 579 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555556666666666666666666666666666666666655555555556
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8739 253 ADLARELEELGERLEE 268 (558)
Q Consensus 253 ~~l~~el~~l~~~l~~ 268 (558)
..+...+.++...+..
T Consensus 580 ~~~rqrveE~ks~~~~ 595 (1293)
T KOG0996|consen 580 NKLRQRVEEAKSSLSS 595 (1293)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6666666666665544
No 28
>KOG0971|consensus
Probab=98.48 E-value=0.0034 Score=67.06 Aligned_cols=173 Identities=22% Similarity=0.294 Sum_probs=88.0
Q ss_pred HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 164 VEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQ 243 (558)
Q Consensus 164 le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~ 243 (558)
+..+|.++-....+++.++-........+.....++..++.+...-++= ..+++.+. +.+.+.|+.+++..+.
T Consensus 267 lqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEm-----aTldKEmA--EERaesLQ~eve~lkE 339 (1243)
T KOG0971|consen 267 LQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEM-----ATLDKEMA--EERAESLQQEVEALKE 339 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHH--HHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555555555555555544433222 23333332 2233344444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHH
Q psy8739 244 SRAKAEKQRADLARELEELGERLEEAGGAT----SAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEM 319 (558)
Q Consensus 244 ~~~~~~~~~~~l~~el~~l~~~l~~~~~~~----~~~~e~~~~~e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L 319 (558)
.. ..|+.+++-|+..+.+.++.. ..++ +..+..-..|+..+-....-... -...+.+....++-.
T Consensus 340 r~-------deletdlEILKaEmeekG~~~~~~ss~qf---kqlEqqN~rLKdalVrLRDlsA~-ek~d~qK~~kelE~k 408 (1243)
T KOG0971|consen 340 RV-------DELETDLEILKAEMEEKGSDGQAASSYQF---KQLEQQNARLKDALVRLRDLSAS-EKQDHQKLQKELEKK 408 (1243)
T ss_pred HH-------HHHHHHHHHHHHHHHhcCCCCcccchHHH---HHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHH
Confidence 33 334455555555555544322 2222 11244445555555444322111 111223445566666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q psy8739 320 GEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQL 354 (558)
Q Consensus 320 ~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~ 354 (558)
+.++..+.+.+..+.+....++..+.++..+++.+
T Consensus 409 ~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 409 NSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777777788888888888777664
No 29
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.42 E-value=0.0039 Score=64.88 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=22.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8739 525 ECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 557 (558)
Q Consensus 525 ~~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~~l 557 (558)
-..+++.++..++..+..+..++..-.-+...|
T Consensus 740 ~k~sLE~ELs~lk~el~slK~QLk~e~~eKE~l 772 (786)
T PF05483_consen 740 HKASLELELSNLKNELSSLKKQLKTERTEKEKL 772 (786)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777777777666554443
No 30
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.41 E-value=0.0049 Score=65.50 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy8739 125 TVDRLQQEED 134 (558)
Q Consensus 125 l~~~l~~~~~ 134 (558)
+...+..+..
T Consensus 39 ~qeel~~~k~ 48 (522)
T PF05701_consen 39 AQEELAKLKE 48 (522)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.32 E-value=0.0065 Score=62.97 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 511 RVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRE 553 (558)
Q Consensus 511 ~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~ 553 (558)
.+.++...+.-++.+...+..+-..|..-+..|+.++..+-..
T Consensus 418 el~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~ 460 (546)
T PF07888_consen 418 ELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADE 460 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5556777777778888888888888888888888887776443
No 32
>KOG0612|consensus
Probab=98.30 E-value=0.012 Score=65.34 Aligned_cols=145 Identities=21% Similarity=0.240 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 396 LSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQR 475 (558)
Q Consensus 396 le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~ 475 (558)
++.++..+...+.........+ .+..-..++.++...+.+....+..+......+..++..|+..+-........+..
T Consensus 672 ~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r 749 (1317)
T KOG0612|consen 672 LERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRR 749 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhh
Confidence 4444444444444443333222 23333677788888888888888888888888999999999888888877788888
Q ss_pred HHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy8739 476 QLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQL 547 (558)
Q Consensus 476 ~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~ 547 (558)
....+..++..+..+++.+...+.....+++..-..+.. +.+++++..+...+..++..++.-..++
T Consensus 750 ~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t-----~~~Ekq~~~~~~~l~~~K~~~e~~~~q~ 816 (1317)
T KOG0612|consen 750 SKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNT-----KMLEKQLKKLLDELAELKKQLEEENAQL 816 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888876554444333333321111111 4445555555555555555555443333
No 33
>KOG0996|consensus
Probab=98.27 E-value=0.014 Score=64.61 Aligned_cols=43 Identities=23% Similarity=0.425 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 199 KDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAE 241 (558)
Q Consensus 199 l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~ 241 (558)
+..++.+|+..+.........+-+..+.+...+..+...+...
T Consensus 547 ~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ 589 (1293)
T KOG0996|consen 547 LKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEA 589 (1293)
T ss_pred HHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333343333333443333333
No 34
>KOG4643|consensus
Probab=98.26 E-value=0.013 Score=63.75 Aligned_cols=195 Identities=17% Similarity=0.276 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 174 DLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRA 253 (558)
Q Consensus 174 el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~ 253 (558)
++.-+.+.++++.....-|-..+..++.++..++.+.+. ..++..+-.++.++..+..+.+..+...+.+.-++.
T Consensus 258 Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-----~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEns 332 (1195)
T KOG4643|consen 258 DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-----ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENS 332 (1195)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 334456677777777777777777777777777775543 567777888888888888888887777777777777
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHHhhHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHhHHHHHHHHH-HHHHHHHHH
Q psy8739 254 DLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANI--QHESTLANLRKKHNDAVSEMGE-QIDQLNKLK 330 (558)
Q Consensus 254 ~l~~el~~l~~~l~~~~~~~~~~~e~~~~~e~el~~lk~~le~~~~--~~~~~~~~lr~~~~~~i~~L~~-~le~~~~~k 330 (558)
.|+..-..|..+++-...- +..+ +.+-..+..+-+.... .+...+.+ +++...+.+++. .++..-...
T Consensus 333 tLq~q~eqL~~~~ellq~~--se~~-----E~en~Sl~~e~eqLts~ralkllLEn--rrlt~tleelqsss~Ee~~SK~ 403 (1195)
T KOG4643|consen 333 TLQVQKEQLDGQMELLQIF--SENE-----ELENESLQVENEQLTSDRALKLLLEN--RRLTGTLEELQSSSYEELISKH 403 (1195)
T ss_pred HHHHHHHHhhhhhhHhhhh--hcch-----hhhhhhHHHHHHHhhhHHHHHHHHHh--HHHHHHHHHHhhhhHHHHHHHH
Confidence 7766665555444321110 0000 1111112222222211 11111111 112222222222 112222223
Q ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy8739 331 TKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDET 382 (558)
Q Consensus 331 ~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~ 382 (558)
..++++.+.|...+..|...+..+.+....++..-+.+..+...+.......
T Consensus 404 leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~ 455 (1195)
T KOG4643|consen 404 LELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTV 455 (1195)
T ss_pred HHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666777777776666666666666666655555555544433
No 35
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.25 E-value=0.011 Score=62.76 Aligned_cols=50 Identities=24% Similarity=0.164 Sum_probs=25.4
Q ss_pred HHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhh
Q psy8739 30 DFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADE 79 (558)
Q Consensus 30 ~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~ 79 (558)
.....+..++.++..|..++...+....+...+......-+.+|+..++.
T Consensus 31 ~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~ 80 (522)
T PF05701_consen 31 EKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEK 80 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544444444444444444444443
No 36
>KOG4643|consensus
Probab=98.13 E-value=0.024 Score=61.77 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 124 DTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDI 157 (558)
Q Consensus 124 ~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 157 (558)
-+.+++++..+.+..|-..+.=|+.||..+++..
T Consensus 261 fykdRveelkedN~vLleekeMLeeQLq~lrars 294 (1195)
T KOG4643|consen 261 FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARS 294 (1195)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 3566666666666666666666666666665554
No 37
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.02 E-value=0.028 Score=58.74 Aligned_cols=83 Identities=23% Similarity=0.327 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 185 LERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQ-------IKELQARIEELEEEVEAERQSRAKAEKQRADLAR 257 (558)
Q Consensus 185 ~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~-------~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~ 257 (558)
....+.-|...+...+..+.++...+...+..+..++.. ++......+.|..+|...+..........+.|+.
T Consensus 238 kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~ 317 (786)
T PF05483_consen 238 KEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEE 317 (786)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555555544444444444333 4455555666667777666666666666666666
Q ss_pred HHHHHHHHHH
Q psy8739 258 ELEELGERLE 267 (558)
Q Consensus 258 el~~l~~~l~ 267 (558)
++......+.
T Consensus 318 ~lq~~~k~~~ 327 (786)
T PF05483_consen 318 DLQQATKTLI 327 (786)
T ss_pred HHHHHHHHHH
Confidence 6555544333
No 38
>KOG0933|consensus
Probab=97.87 E-value=0.07 Score=58.39 Aligned_cols=89 Identities=15% Similarity=0.212 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 344 TNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKIS 423 (558)
Q Consensus 344 ~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~ 423 (558)
+.++...+..+........+...+.+..+..+....+++...+.....+...+...+..|..++..+...+.........
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~ 868 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKK 868 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Confidence 44444444444444444444444444444445555555444444444444444445555555544444444444444444
Q ss_pred HHHHHHHHH
Q psy8739 424 LTTQLEDTK 432 (558)
Q Consensus 424 l~~~l~el~ 432 (558)
+..++.+..
T Consensus 869 ~~~el~~~k 877 (1174)
T KOG0933|consen 869 AQAELKDQK 877 (1174)
T ss_pred HHHHHHHHH
Confidence 444444333
No 39
>PRK01156 chromosome segregation protein; Provisional
Probab=97.86 E-value=0.1 Score=60.03 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy8739 313 NDAVSEMGEQID 324 (558)
Q Consensus 313 ~~~i~~L~~~le 324 (558)
...+..+...+.
T Consensus 475 ~~~i~~l~~~i~ 486 (895)
T PRK01156 475 NEKKSRLEEKIR 486 (895)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 40
>KOG0976|consensus
Probab=97.82 E-value=0.068 Score=56.80 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=11.4
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 450 RNLEHDIDNIREQLEEEAEGKADLQRQ 476 (558)
Q Consensus 450 ~~le~e~~~l~~~lee~~~~~~~l~~~ 476 (558)
+.++.+++.+....+-....+..+...
T Consensus 479 rKVeqe~emlKaen~rqakkiefmkEe 505 (1265)
T KOG0976|consen 479 RKVEQEYEMLKAENERQAKKIEFMKEE 505 (1265)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555444444333333333333
No 41
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.79 E-value=2e-05 Score=87.49 Aligned_cols=35 Identities=37% Similarity=0.443 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy8739 515 LAAELDASQKECRNYSTELFRLKGAYEEAQEQLEA 549 (558)
Q Consensus 515 l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~ 549 (558)
+...++.+...+..++.++..++..+..++..+..
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666666666666554
No 42
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.73 E-value=0.11 Score=56.28 Aligned_cols=49 Identities=8% Similarity=0.168 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8739 312 HNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAA 360 (558)
Q Consensus 312 ~~~~i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~~~~~~~ 360 (558)
....|..|-..++....++..+++....+...+..+..+...+......
T Consensus 287 i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~ 335 (569)
T PRK04778 287 IQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDR 335 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666665555555555555555555544444444444433333
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.64 E-value=0.098 Score=56.80 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 344 TNNTRAAADQLAREKAATEKIAKQLQHQLNEVQ 376 (558)
Q Consensus 344 ~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~ 376 (558)
+..+...++.+......+...+..++..+..+.
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333333333333
No 44
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.61 E-value=0.15 Score=54.89 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy8739 248 AEKQRADLARELEEL 262 (558)
Q Consensus 248 ~~~~~~~l~~el~~l 262 (558)
++.....++......
T Consensus 166 Le~~L~~ie~~F~~f 180 (560)
T PF06160_consen 166 LEKQLENIEEEFSEF 180 (560)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 45
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.60 E-value=0.00089 Score=74.44 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q psy8739 185 LERNKKELEQTIQRKDKEIASLTA 208 (558)
Q Consensus 185 ~~~~~~~le~~~~~l~~el~~l~~ 208 (558)
+..+...++-.+..++.++..|..
T Consensus 303 ~~~el~~lq~e~~~Le~el~sW~s 326 (722)
T PF05557_consen 303 LEEELAELQLENEKLEDELNSWES 326 (722)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566666666655
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.54 E-value=0.078 Score=57.57 Aligned_cols=21 Identities=10% Similarity=0.328 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8739 247 KAEKQRADLARELEELGERLE 267 (558)
Q Consensus 247 ~~~~~~~~l~~el~~l~~~l~ 267 (558)
.+......+..++..+..++.
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544
No 47
>KOG0994|consensus
Probab=97.52 E-value=0.25 Score=54.90 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=39.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy8739 502 LEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEA 549 (558)
Q Consensus 502 ~ee~k~~~~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~ 549 (558)
+-.+..++..+.+|...++.-+..+..+..++..|..+++.+...|..
T Consensus 1702 l~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~ 1749 (1758)
T KOG0994|consen 1702 LGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINE 1749 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 345666778888999889889999999999999988888888777654
No 48
>KOG0976|consensus
Probab=97.49 E-value=0.2 Score=53.36 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHH
Q psy8739 453 EHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESK 506 (558)
Q Consensus 453 e~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k 506 (558)
..+.......+.+.....+.+...+..++..+..++.-++..-..+...++.-.
T Consensus 409 ~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcn 462 (1265)
T KOG0976|consen 409 KKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCN 462 (1265)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHH
Confidence 445555555666666666666666777777777777666544334444444433
No 49
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.49 E-value=2.3e-05 Score=86.65 Aligned_cols=57 Identities=28% Similarity=0.374 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy8739 142 QKKKLEQENGGLKKDIEDL---EGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRK 199 (558)
Q Consensus 142 ~~~~l~~~~~~l~~~~e~~---~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l 199 (558)
....|..+++.|+...+.+ ...+++.|++|+. +..++.++..+......+-..+..+
T Consensus 292 ~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed-~~~lk~qvk~Lee~N~~l~e~~~~L 351 (713)
T PF05622_consen 292 EARALRDELDELREKADRADKLENEVEKYKKKLED-LEDLKRQVKELEEDNAVLLETKAML 351 (713)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555554444332 1445555655542 3444444444444444333333333
No 50
>KOG0964|consensus
Probab=97.42 E-value=0.29 Score=53.57 Aligned_cols=197 Identities=21% Similarity=0.257 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhH-----HHHHhhhhhhhh
Q psy8739 8 KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQL-----EDTKRLADEESS 82 (558)
Q Consensus 8 ~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql-----~el~~~~e~e~~ 82 (558)
+.++....+...-+++.......+..-..-+...+.+|...-+++. .+..+.+.+.+++.-+ .++...++.
T Consensus 166 rvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~-~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~--- 241 (1200)
T KOG0964|consen 166 RVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELE-KYQKLDKERRSLEYTIYDRELNEINGELER--- 241 (1200)
T ss_pred chhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhHhhhhhhhhhhHHHHHHHHHHH---
Confidence 3455555555666666666666666555556555555555544443 2455666666655544 222222222
Q ss_pred hhhhhhhhchhhhhhhhhchhhhhccchhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy8739 83 GWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLE- 161 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~- 161 (558)
++.+.... -..-..+.+.+...++....+...+..|+..+.-+....+.+.
T Consensus 242 ------------------le~~r~~~----------~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a 293 (1200)
T KOG0964|consen 242 ------------------LEEDRSSA----------PEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKA 293 (1200)
T ss_pred ------------------HHHHHhcc----------chhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 22221110 1112455666667777777777777777777777777665543
Q ss_pred --hhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHH
Q psy8739 162 --GDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEE 236 (558)
Q Consensus 162 --~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~ 236 (558)
..+-+.+.+|+-+++++++++..-..........+..+...+.+-...+....+....+..+-..+..+|..|+.
T Consensus 294 ~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 294 RETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 334445666777777888887766666666666666666666666666666666666555555555555555554
No 51
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.35 E-value=0.59 Score=55.40 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739 344 TNNTRAAADQLAREKAATEKIAKQLQHQLNEVQG 377 (558)
Q Consensus 344 ~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~ 377 (558)
+..+...+..+......+++.+......+..+..
T Consensus 609 l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~ 642 (1201)
T PF12128_consen 609 LEQAEDQLQSAEERQEELEKQLKQINKKIEELKR 642 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 52
>KOG0250|consensus
Probab=97.31 E-value=0.45 Score=53.14 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=24.0
Q ss_pred HHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHH
Q psy8739 14 LNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQ 58 (558)
Q Consensus 14 l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~ 58 (558)
|.+....+......+......+..+...+..+.+.+.+.+..+..
T Consensus 209 L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~ 253 (1074)
T KOG0250|consen 209 LEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDN 253 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555566666666666665555543
No 53
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.30 E-value=0.11 Score=46.04 Aligned_cols=102 Identities=25% Similarity=0.327 Sum_probs=69.6
Q ss_pred HHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhhhhhhhhhhhhhchhhhhhhhhc
Q psy8739 22 DETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKSL 101 (558)
Q Consensus 22 ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~e~~~~~~~~~~~~~~~~~~~~~ 101 (558)
.++...+.++.....+|..++..++..++..+.....|..+...+..++..++..+.. .+.
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~------------------aK~- 64 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQK------------------AKA- 64 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHH-
Confidence 4566788889999999999999999999999998888888888888887766433222 111
Q ss_pred hhhhhccchhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 102 DLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE 158 (558)
Q Consensus 102 ~~~~~~~~~~~~~~~~le~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e 158 (558)
+..++.+|+.-+...++....|-.+...++.+...+-..++
T Consensus 65 ----------------l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~ 105 (193)
T PF14662_consen 65 ----------------LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIE 105 (193)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345566666665666555555555555555555555544
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.29 E-value=0.41 Score=52.46 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy8739 510 RRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQE 545 (558)
Q Consensus 510 ~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~ 545 (558)
..+-+...+++.++..+..-+.||..|+.+|.++..
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666667777777777777777777777766643
No 55
>PRK11637 AmiB activator; Provisional
Probab=97.28 E-value=0.31 Score=50.82 Aligned_cols=6 Identities=17% Similarity=0.307 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy8739 319 MGEQID 324 (558)
Q Consensus 319 L~~~le 324 (558)
++.+++
T Consensus 45 ~~~~l~ 50 (428)
T PRK11637 45 NRDQLK 50 (428)
T ss_pred hHHHHH
Confidence 333333
No 56
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.18 E-value=0.49 Score=51.05 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy8739 224 IKELQARIEELEEEV 238 (558)
Q Consensus 224 ~~~lq~~i~~l~~el 238 (558)
+..|...+..|...+
T Consensus 89 ~~~L~kElE~L~~ql 103 (617)
T PF15070_consen 89 AEHLRKELESLEEQL 103 (617)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 57
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.18 E-value=0.12 Score=43.95 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERA 443 (558)
Q Consensus 364 ~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~ 443 (558)
.+..++.++...+.....+..........+..+..++..+...+..+...+..+...+..+...+...+..+.++...+.
T Consensus 25 ~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 25 HVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333333333333333333333333333444444444444444444444444445555555555555555555555555
Q ss_pred HHHHHHhchHHH
Q psy8739 444 TLLGKFRNLEHD 455 (558)
Q Consensus 444 ~l~~~~~~le~e 455 (558)
++...+..++.+
T Consensus 105 ~~~~~l~~~E~e 116 (140)
T PF10473_consen 105 SLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 58
>KOG0933|consensus
Probab=97.16 E-value=0.58 Score=51.59 Aligned_cols=149 Identities=23% Similarity=0.294 Sum_probs=90.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------HHHHhhHHhhHHHHHHHHHHHHH
Q psy8739 118 ISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDV----------EKQKRKIEGDLKLTQEAVADLER 187 (558)
Q Consensus 118 le~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~~~l----------e~~k~~le~el~~~~~~~~~~~~ 187 (558)
+...+.+....|...+..+........++.....+...-++.....+ +..-.-++.++..+..++..+..
T Consensus 334 i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t 413 (1174)
T KOG0933|consen 334 IRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEAST 413 (1174)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544444445555544444444332111 11335567788888888888777
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q psy8739 188 NKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEV----------EAERQSRAKAEKQRADLAR 257 (558)
Q Consensus 188 ~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el----------~~~~~~~~~~~~~~~~l~~ 257 (558)
......-....+..++......+.............+..++..++.+...+ +..+..+..+.....+|..
T Consensus 414 ~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~ 493 (1174)
T KOG0933|consen 414 EIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKD 493 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766666666555566666666666677666655 3345666667777777777
Q ss_pred HHHHHHHHH
Q psy8739 258 ELEELGERL 266 (558)
Q Consensus 258 el~~l~~~l 266 (558)
.+..|..++
T Consensus 494 ~~~~l~a~~ 502 (1174)
T KOG0933|consen 494 ELDRLLARL 502 (1174)
T ss_pred HHHHHHhhh
Confidence 777777655
No 59
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.16 E-value=0.14 Score=44.22 Aligned_cols=46 Identities=20% Similarity=0.449 Sum_probs=27.4
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 447 GKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 447 ~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
..+...+..+......+.+.......+.+.+..+..+...|-.+|+
T Consensus 87 eele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 87 EELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333344455555555555555566666666666677777776665
No 60
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.13 E-value=0.00011 Score=81.45 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q psy8739 431 TKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEE 466 (558)
Q Consensus 431 l~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~ 466 (558)
++..+++....+..+...++.....+..++.++++.
T Consensus 486 L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~l 521 (713)
T PF05622_consen 486 LQSQLEDANRRKEKLEEENREANEKILELQSQLEEL 521 (713)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344433333344444333333444444444333
No 61
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.08 E-value=0.26 Score=46.03 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=15.4
Q ss_pred HhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 376 QGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQ 413 (558)
Q Consensus 376 ~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~ 413 (558)
...+.+.+.....+..++..++.++..+..++...+..
T Consensus 44 ~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 44 NKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444443333
No 62
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.06 E-value=0.2 Score=44.47 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8739 246 AKAEKQRADLARELEELGERLEE 268 (558)
Q Consensus 246 ~~~~~~~~~l~~el~~l~~~l~~ 268 (558)
..++-.+..|..++.+|..++..
T Consensus 32 e~~ee~na~L~~e~~~L~~q~~s 54 (193)
T PF14662_consen 32 ETAEEGNAQLAEEITDLRKQLKS 54 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666665554
No 63
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.02 E-value=0.4 Score=47.24 Aligned_cols=42 Identities=21% Similarity=0.411 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739 227 LQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEE 268 (558)
Q Consensus 227 lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~ 268 (558)
++..|.++...++.....+..+..++..|...+..+..+++-
T Consensus 112 Fq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~ 153 (309)
T PF09728_consen 112 FQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYEL 153 (309)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555556666777777777777776654
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.93 E-value=0.9 Score=49.88 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 407 LEEAESQVSQLSKIKISLTTQLEDTKRLADEEG 439 (558)
Q Consensus 407 l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~ 439 (558)
+.+...++..+...+..-+.+|.+|+..|.++.
T Consensus 624 Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 624 LGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555666666666655543
No 65
>PRK09039 hypothetical protein; Validated
Probab=96.88 E-value=0.38 Score=48.23 Aligned_cols=11 Identities=9% Similarity=0.380 Sum_probs=5.5
Q ss_pred HHHHHHHHhhH
Q psy8739 482 ADAQLWRTKYE 492 (558)
Q Consensus 482 ~e~~~~k~kle 492 (558)
.++..|+..+.
T Consensus 190 ~~l~~~~~~~~ 200 (343)
T PRK09039 190 QELNRYRSEFF 200 (343)
T ss_pred HHHHHhHHHHH
Confidence 34455555554
No 66
>KOG4673|consensus
Probab=96.86 E-value=0.81 Score=48.22 Aligned_cols=36 Identities=25% Similarity=0.087 Sum_probs=22.6
Q ss_pred HHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHh
Q psy8739 32 DAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLT 67 (558)
Q Consensus 32 ~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~ 67 (558)
...+.++..++..|...|+..+..+....+.+.-+.
T Consensus 345 q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~le 380 (961)
T KOG4673|consen 345 QLELDKTKKEIKMLNNALEAREAQLLADEIAKAMLE 380 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677777777766666666666554443
No 67
>KOG0018|consensus
Probab=96.83 E-value=1.2 Score=49.69 Aligned_cols=111 Identities=19% Similarity=0.272 Sum_probs=71.2
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH---HhhhhHHHHHHHhhhhhHHHHHHH
Q psy8739 442 RATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESE---GVARAEELEESKSEERRVDDLAAE 518 (558)
Q Consensus 442 ~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~---~~~~~~~~ee~k~~~~~~~~l~~~ 518 (558)
+..+..++..++-++++.+. .+........+..+..++.++..++..-+.- +... ++++. + ....+.++..+
T Consensus 783 ~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-k-~k~~~~~~~~e 857 (1141)
T KOG0018|consen 783 RLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-K-NKSKFEKKEDE 857 (1141)
T ss_pred HHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-H-HHHHHHHHHHH
Confidence 33444455555555555443 3334444445555555555555555433211 1122 33333 2 24788888999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8739 519 LDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 557 (558)
Q Consensus 519 ~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~~l 557 (558)
+.........+-.++..+...+..++..++.+..++.+|
T Consensus 858 ~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~l 896 (1141)
T KOG0018|consen 858 INEVKKILRRLVKELTKLDKEITSIESKIERKESERHNL 896 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887654
No 68
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.80 E-value=0.5 Score=44.96 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8739 227 LQARIEELEEEVEAER 242 (558)
Q Consensus 227 lq~~i~~l~~el~~~~ 242 (558)
|+..|.-|.-+++..+
T Consensus 4 Lq~eia~LrlEidtik 19 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIK 19 (305)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555543
No 69
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.77 E-value=0.53 Score=44.80 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 224 IKELQARIEELEEEVEAERQSRAKAEK 250 (558)
Q Consensus 224 ~~~lq~~i~~l~~el~~~~~~~~~~~~ 250 (558)
+..|.+...-|...|+.++..+..++.
T Consensus 65 Ln~L~aENt~L~SkLe~EKq~kerLEt 91 (305)
T PF14915_consen 65 LNVLKAENTMLNSKLEKEKQNKERLET 91 (305)
T ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHH
Confidence 333444444455555555544444333
No 70
>KOG0978|consensus
Probab=96.76 E-value=1.1 Score=48.36 Aligned_cols=129 Identities=19% Similarity=0.149 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERA 443 (558)
Q Consensus 364 ~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~ 443 (558)
..-+......-|......+...+..+......+...+..+..+...+......+......+..-+...+...-+......
T Consensus 490 e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~ 569 (698)
T KOG0978|consen 490 ERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLE 569 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444455555555555555555555555555544444445555555555555555555555555
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 444 TLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 444 ~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
.+...+......+..++.++.+..............++.++..++++++
T Consensus 570 ~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 570 DLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556666666666666655555555555666666666666664
No 71
>PRK09039 hypothetical protein; Validated
Probab=96.72 E-value=0.45 Score=47.73 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHH
Q psy8739 365 AKQLQHQLNEVQGKLDETNRSLNDFDA 391 (558)
Q Consensus 365 ~~~le~~l~el~~~l~e~~~~~~~l~~ 391 (558)
...++..+..++..+......+..+..
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555444444444443
No 72
>KOG1029|consensus
Probab=96.72 E-value=1.1 Score=47.92 Aligned_cols=129 Identities=16% Similarity=0.231 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERA 443 (558)
Q Consensus 364 ~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~ 443 (558)
.+..|...|.+.+..+......+..+...+..+-.++..+..++.+....+-.+--.+..+..++...+...-.......
T Consensus 452 k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 452 KLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred HHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 34444444555444444444555556666666666777777777777666666655666666666666554433333233
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 444 TLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 444 ~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
.|....+.-+.=+..+..+++++......--..++-++..+..|+.-+.
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~ 580 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVN 580 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3333333333344455555555554444444445555555555555444
No 73
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.68 E-value=2.3 Score=50.93 Aligned_cols=48 Identities=21% Similarity=0.390 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8739 510 RRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 557 (558)
Q Consensus 510 ~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~~l 557 (558)
.....+...+..++.....+...+..+...+..+...+..+..+...|
T Consensus 999 ~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~ 1046 (1486)
T PRK04863 999 QERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDL 1046 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344445555555555555555555566666666666665555554443
No 74
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.67 E-value=1.4 Score=48.17 Aligned_cols=95 Identities=21% Similarity=0.303 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHhHHhhhhHHHHHHHhhh-------hhHHHHHHHHHHH
Q psy8739 454 HDIDNIREQLEEEAEGKADLQRQLS----KANADAQLWRTKYESEGVARAEELEESKSEE-------RRVDDLAAELDAS 522 (558)
Q Consensus 454 ~e~~~l~~~lee~~~~~~~l~~~l~----~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~-------~~~~~l~~~~~~~ 522 (558)
.++-.|++-|.--++.+..|...+. -...-++.+|.+|+.+-....+.+.-+++.+ ..+..+.+- +
T Consensus 590 eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRam---F 666 (717)
T PF09730_consen 590 EQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLRAM---F 666 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 4455555555555555555554433 3555677999999988777777777777666 222222222 2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8739 523 QKECRNYSTELFRLKGAYEEAQEQLEAVR 551 (558)
Q Consensus 523 ~~~~~~~e~e~~~l~~~l~e~~~~~~~l~ 551 (558)
-.+|.+|-+++..+.+.+...++...+|.
T Consensus 667 a~RCdEYvtQldemqrqL~aAEdEKKTLN 695 (717)
T PF09730_consen 667 AARCDEYVTQLDEMQRQLAAAEDEKKTLN 695 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34556666666666666666555555543
No 75
>KOG0250|consensus
Probab=96.66 E-value=1.6 Score=48.94 Aligned_cols=65 Identities=14% Similarity=0.234 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q psy8739 397 SIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIRE 461 (558)
Q Consensus 397 e~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~ 461 (558)
...+..+...+..+...+..+......+...+.++...+..+..........++....++..+..
T Consensus 660 d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 660 DDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444444444444444444444444444444444555554444
No 76
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.64 E-value=1.3 Score=47.80 Aligned_cols=45 Identities=24% Similarity=0.439 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739 224 IKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEE 268 (558)
Q Consensus 224 ~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~ 268 (558)
...|+.++..+..++...+..+.........|+..|.+|+.++..
T Consensus 24 ~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~ 68 (617)
T PF15070_consen 24 SAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAE 68 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334555555555555555555555555566666666666665554
No 77
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.52 E-value=0.71 Score=43.12 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q psy8739 424 LTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLE 464 (558)
Q Consensus 424 l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~le 464 (558)
+..++.++...+..+......+...+..++..+..+...++
T Consensus 108 le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e 148 (239)
T COG1579 108 LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLE 148 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444444444443333
No 78
>KOG0980|consensus
Probab=96.48 E-value=1.8 Score=47.29 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 415 SQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 415 ~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
.++++..-..+.++..+...+..+......+...+..+...+...+..+.+..+.+.++...+.++......|..+++
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e 490 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTE 490 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334444444444455555555554444444444444444444444444444444444555555555555555544444
No 79
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.33 E-value=2.2 Score=46.65 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH
Q psy8739 136 RNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQG 215 (558)
Q Consensus 136 ~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~ 215 (558)
...-...-..|...|.++...+......+ .....+...+.....++...+..++..+.++..++.+++.+=.+...
T Consensus 22 l~esa~~E~~~~~~i~~l~~elk~~~~~~----~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~ 97 (717)
T PF09730_consen 22 LQESASKEAYLQQRILELENELKQLRQEL----SNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQ 97 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555667777777776664333222 33345666666777778888888888888888888888887777777
Q ss_pred HhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 216 LVGKNQKQIKELQARIEELEE-EVEAERQSRAKAEKQRADLARELEELGERLEEA 269 (558)
Q Consensus 216 ~~~~~~~~~~~lq~~i~~l~~-el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~ 269 (558)
....++...-.||.++.-|.. +++. ..+.-+++.|..++.-|..+++++
T Consensus 98 dyselEeENislQKqvs~Lk~sQvef-----E~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEF-----EGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888764 3333 346678889999999999988885
No 80
>KOG4673|consensus
Probab=96.31 E-value=1.9 Score=45.67 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=21.3
Q ss_pred HHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Q psy8739 488 RTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYST 531 (558)
Q Consensus 488 k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~~~e~ 531 (558)
+.-+..+++.++.+.+.++.+...|-.+...+..+..+...+-.
T Consensus 882 Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~Lq 925 (961)
T KOG4673|consen 882 RSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQ 925 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555554444444444444444443333
No 81
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.29 E-value=2.1 Score=46.15 Aligned_cols=106 Identities=16% Similarity=0.263 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhchHHHH
Q psy8739 386 LNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRER---------ATLLGKFRNLEHDI 456 (558)
Q Consensus 386 ~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~---------~~l~~~~~~le~e~ 456 (558)
.+.+......+...+..+.....+....+..+...-..+...+..++..+....+.. .++...+..+...+
T Consensus 374 yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i 453 (560)
T PF06160_consen 374 YSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEI 453 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443333333333433333333332221 11222333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 457 DNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY 491 (558)
Q Consensus 457 ~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl 491 (558)
..+...++...-....+...+..+...+..+..+.
T Consensus 454 ~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t 488 (560)
T PF06160_consen 454 EELSDELNQVPINMDEVNKQLEEAEDDVETLEEKT 488 (560)
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443334444444444444444444443
No 82
>KOG0963|consensus
Probab=96.27 E-value=1.9 Score=45.36 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhh-----------------------------hhHHHHHH
Q psy8739 467 AEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEE-----------------------------RRVDDLAA 517 (558)
Q Consensus 467 ~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~-----------------------------~~~~~l~~ 517 (558)
...++.+...+......+..++.++... .+.+++++.+ ..-..++.
T Consensus 316 ~~qI~~le~~l~~~~~~leel~~kL~~~-----sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~ 390 (629)
T KOG0963|consen 316 KAQISALEKELKAKISELEELKEKLNSR-----SDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQN 390 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhH
Confidence 3344555666666666666666666421 3455555554 23344555
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 518 ELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRE 553 (558)
Q Consensus 518 ~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~ 553 (558)
+...+......+.+++..+....+++.......++-
T Consensus 391 e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~ 426 (629)
T KOG0963|consen 391 ENASLRVANSGLSGRITELSKKGEELEAKATEQKEL 426 (629)
T ss_pred HHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHH
Confidence 555555555555566666666666665555555443
No 83
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.24 E-value=1.2 Score=42.73 Aligned_cols=12 Identities=42% Similarity=0.656 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q psy8739 253 ADLARELEELGE 264 (558)
Q Consensus 253 ~~l~~el~~l~~ 264 (558)
..++..+..|..
T Consensus 110 ~~ler~i~~Le~ 121 (294)
T COG1340 110 KSLEREIERLEK 121 (294)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 84
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.23 E-value=0.92 Score=41.30 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 385 SLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLAD 436 (558)
Q Consensus 385 ~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le 436 (558)
.-+++...+.....++..|+..+-........+.+.++....++.-+...+.
T Consensus 55 ~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~ 106 (194)
T PF15619_consen 55 TEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELK 106 (194)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555566666666666666666666665666666666666655555544
No 85
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.16 E-value=2.5 Score=45.61 Aligned_cols=117 Identities=21% Similarity=0.314 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Q psy8739 198 RKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQI 277 (558)
Q Consensus 198 ~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~~~ 277 (558)
.-+.++..++..++........+...+..+...+..+..++.........++...+-. ....+| +.++ ......+
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~-~k~~~l---L~d~-e~ni~kL 399 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK-KKTVEL---LPDA-EENIAKL 399 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---hcCc-HHHHHHH
Confidence 3444555555555555555555555555555555555555544443333333333211 111111 1110 0112222
Q ss_pred HHHhhH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHH
Q psy8739 278 ELNKKR-EAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEM 319 (558)
Q Consensus 278 e~~~~~-e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L 319 (558)
+..... ...+..|..+.+....-+..++..++..+.....+.
T Consensus 400 ~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~ 442 (594)
T PF05667_consen 400 QALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESES 442 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHH
Confidence 222222 445666666666666555555555554443333333
No 86
>KOG1003|consensus
Probab=96.01 E-value=1 Score=39.99 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=50.6
Q ss_pred hhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy8739 377 GKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDI 456 (558)
Q Consensus 377 ~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~ 456 (558)
...++..+.+..+.....+++..+..+..++.+.......+.+.....-..|.=+...|+.....-.........+..++
T Consensus 39 q~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~ 118 (205)
T KOG1003|consen 39 QAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDL 118 (205)
T ss_pred hcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444555554444443333333333333333333344433333334444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 457 DNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY 491 (558)
Q Consensus 457 ~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl 491 (558)
..+...+..+...-..+..........|..+-.+|
T Consensus 119 ~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKL 153 (205)
T KOG1003|consen 119 RILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKL 153 (205)
T ss_pred HHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 55555554444444444444444444444444444
No 87
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.99 E-value=2.1 Score=43.33 Aligned_cols=65 Identities=22% Similarity=0.272 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8739 315 AVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKL 379 (558)
Q Consensus 315 ~i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l 379 (558)
.|..|...+..+...+..+..+...+..-+.....+...+.....+-.+....++..+..-+..+
T Consensus 162 ~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l 226 (420)
T COG4942 162 RIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKL 226 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555444444444444443333333333333333333333333
No 88
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.96 E-value=0.88 Score=38.77 Aligned_cols=86 Identities=19% Similarity=0.248 Sum_probs=39.3
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 332 KAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAE 411 (558)
Q Consensus 332 ~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~ 411 (558)
.+...+..|+.++..+......+........+.+..+..++..+...+......+..+.+....+...+...+..+.+++
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444455555555555444444444444444444444444444444444444
Q ss_pred HHHHHH
Q psy8739 412 SQVSQL 417 (558)
Q Consensus 412 ~~~~~~ 417 (558)
.....+
T Consensus 101 ~~~~~~ 106 (140)
T PF10473_consen 101 SLNSSL 106 (140)
T ss_pred HHhHHH
Confidence 443333
No 89
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.88 E-value=1.4 Score=40.40 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHH
Q psy8739 472 DLQRQLSKANADAQLWRTKYESEG 495 (558)
Q Consensus 472 ~l~~~l~~l~~e~~~~k~kle~~~ 495 (558)
.....+...+.+|...++.+..++
T Consensus 140 hAeekL~~ANeei~~v~~~~~~e~ 163 (207)
T PF05010_consen 140 HAEEKLEKANEEIAQVRSKHQAEL 163 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344556667777777777776444
No 90
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.52 E-value=1.3 Score=37.62 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q psy8739 395 KLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKAD 472 (558)
Q Consensus 395 ~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~ 472 (558)
.+..++..+..........+..+...+........+.+..++.+.-........+..++.++..++..+..+......
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~ 84 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAES 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444445555555555555555555555555555555555555555544443333
No 91
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.50 E-value=2 Score=39.43 Aligned_cols=110 Identities=13% Similarity=0.133 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhh-
Q psy8739 431 TKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEE- 509 (558)
Q Consensus 431 l~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~- 509 (558)
+...+..+.....++...+..+..-+..++..-+.+......+...+.........|+...+..+..-..+++.++++.
T Consensus 81 ~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~ 160 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQ 160 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333444444444444444445555555555445455555555566666666666666666655545555555555443
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy8739 510 RRVDDLAAELDASQKECRNYSTELFRLKGAY 540 (558)
Q Consensus 510 ~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l 540 (558)
..+..|++.+...+-.+.+++..+.......
T Consensus 161 ~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn 191 (207)
T PF05010_consen 161 AELLALQASLKKEEMKVQSLEESLEQKTKEN 191 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333333333
No 92
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.48 E-value=4.6 Score=43.56 Aligned_cols=79 Identities=10% Similarity=0.150 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHhhhhHHH-HHHHhhhhhHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHH
Q psy8739 472 DLQRQLSKANADAQLWRTKYESEGVARAEEL-EESKSEERRVDDLAAELDASQKECRNYST---ELFRLKGAYEEAQEQL 547 (558)
Q Consensus 472 ~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~-ee~k~~~~~~~~l~~~~~~~~~~~~~~e~---e~~~l~~~l~e~~~~~ 547 (558)
.+-.....++.+|..+..+++.-.....+.+ .++++. .....++.-+..+-..+..+-. +.-.+.+.+.+|+++|
T Consensus 509 KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkD-e~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI 587 (594)
T PF05667_consen 509 KILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKD-EAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQI 587 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3334444566677777777765443333322 444433 3344444444444444444443 3334666667777776
Q ss_pred HHHH
Q psy8739 548 EAVR 551 (558)
Q Consensus 548 ~~l~ 551 (558)
+...
T Consensus 588 ~~e~ 591 (594)
T PF05667_consen 588 DTES 591 (594)
T ss_pred HHHh
Confidence 6543
No 93
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.45 E-value=6.7 Score=45.28 Aligned_cols=8 Identities=25% Similarity=0.655 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy8739 287 MSKLRRDL 294 (558)
Q Consensus 287 l~~lk~~l 294 (558)
+..+...+
T Consensus 483 l~~l~~~i 490 (908)
T COG0419 483 LEELEEEL 490 (908)
T ss_pred HHHHHHHH
Confidence 33333333
No 94
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=95.27 E-value=0.38 Score=34.38 Aligned_cols=60 Identities=10% Similarity=0.253 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 430 DTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRT 489 (558)
Q Consensus 430 el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~ 489 (558)
+|++.|+.+.+++..+...+..+...+-.+...+.+.......|...|..+..++..++.
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578889999999999999999999999999999999999889998888888888777653
No 95
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.27 E-value=2.3 Score=38.76 Aligned_cols=13 Identities=38% Similarity=0.772 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy8739 284 EAEMSKLRRDLEE 296 (558)
Q Consensus 284 e~el~~lk~~le~ 296 (558)
.+++..++..+++
T Consensus 18 ~n~l~elq~~l~~ 30 (194)
T PF15619_consen 18 QNELAELQRKLQE 30 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 96
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.09 E-value=3.4 Score=39.74 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 232 EELEEEVEAERQSRAKAEKQRADLARELEELGERLE 267 (558)
Q Consensus 232 ~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~ 267 (558)
..+..++...+..+..+-.....|-..+..+....+
T Consensus 65 deineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 65 DEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333333333445555555555444
No 97
>KOG0978|consensus
Probab=95.07 E-value=6.3 Score=42.77 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=20.3
Q ss_pred HHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhh
Q psy8739 30 DFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRL 76 (558)
Q Consensus 30 ~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~ 76 (558)
.+.....+|+..+..+...+-.....+..+........+.+.++...
T Consensus 52 ~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~ 98 (698)
T KOG0978|consen 52 ELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQ 98 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHh
Confidence 34444444444444444444444444444443333444444333333
No 98
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.93 E-value=4.9 Score=40.79 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy8739 427 QLEDTKRLADEEGRERATLLGKFRNLE 453 (558)
Q Consensus 427 ~l~el~~~le~~~~~~~~l~~~~~~le 453 (558)
.+..-+..++++...-..+...+.+++
T Consensus 218 ~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 218 ELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 99
>KOG0999|consensus
Probab=94.86 E-value=5.6 Score=41.14 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 361 TEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQ---VSQLSKIKISLTTQLEDTKRLADE 437 (558)
Q Consensus 361 ~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~---~~~~~~~~~~l~~~l~el~~~le~ 437 (558)
.+-.+..+..+|.++.. .-..+-+.+..++.++-.|+.++..++.. +..+...++.+...+.-+..++++
T Consensus 147 ~E~qR~rlr~elKe~Kf-------RE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee 219 (772)
T KOG0999|consen 147 VEDQRRRLRDELKEYKF-------REARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEE 219 (772)
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433 23445555666666666666666655433 334455566666666666666666
Q ss_pred HHHHHHHHHHH
Q psy8739 438 EGRERATLLGK 448 (558)
Q Consensus 438 ~~~~~~~l~~~ 448 (558)
..+-+..+..+
T Consensus 220 ~~~Lk~IAekQ 230 (772)
T KOG0999|consen 220 AIRLKEIAEKQ 230 (772)
T ss_pred HHHHHHHHHHH
Confidence 66555554433
No 100
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.83 E-value=5.2 Score=40.57 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 188 NKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAE 241 (558)
Q Consensus 188 ~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~ 241 (558)
.+...++.+..++.-+...+..+...+.....++-.++++....-.|++..-.+
T Consensus 384 EKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~e 437 (527)
T PF15066_consen 384 EKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTE 437 (527)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344555556666666666666666666666666666666666665565554443
No 101
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.82 E-value=2.2 Score=36.28 Aligned_cols=48 Identities=23% Similarity=0.165 Sum_probs=23.9
Q ss_pred HHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhhhh
Q psy8739 34 AKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEES 81 (558)
Q Consensus 34 ~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~e~ 81 (558)
.+..+..++..+.....++...+..+............+++..|+.+.
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El 51 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYEREL 51 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554444444444444444444433
No 102
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.53 E-value=5.4 Score=39.39 Aligned_cols=81 Identities=21% Similarity=0.307 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy8739 187 RNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAE----RQSRAKAEKQRADLARELEEL 262 (558)
Q Consensus 187 ~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~----~~~~~~~~~~~~~l~~el~~l 262 (558)
.....+.+...-+..+...++..+.........++.-.+.|+.....+.++.... ...|.. -...+...|.++
T Consensus 43 k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~e---l~~kFq~~L~dI 119 (309)
T PF09728_consen 43 KQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKE---LSEKFQATLKDI 119 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3333334444444444455555554444445555555555555554444332111 111111 134555666666
Q ss_pred HHHHHhhc
Q psy8739 263 GERLEEAG 270 (558)
Q Consensus 263 ~~~l~~~~ 270 (558)
...+++..
T Consensus 120 q~~~ee~~ 127 (309)
T PF09728_consen 120 QAQMEEQS 127 (309)
T ss_pred HHHHHhcc
Confidence 66666533
No 103
>KOG0964|consensus
Probab=94.49 E-value=10 Score=42.34 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=14.1
Q ss_pred HHHHhhHHhHhhhHHHHHhhhhhhhhhh
Q psy8739 57 SQLSKIKISLTTQLEDTKRLADEESSGW 84 (558)
Q Consensus 57 ~~l~k~~~~l~~ql~el~~~~e~e~~~~ 84 (558)
....+.+..+.-++.+++....-....+
T Consensus 296 t~~~k~kt~lel~~kdlq~~i~~n~q~r 323 (1200)
T KOG0964|consen 296 TKISKKKTKLELKIKDLQDQITGNEQQR 323 (1200)
T ss_pred HHHHHHhhhhhhhhHHHHHHhhhhhhhh
Confidence 3344445555555555555555544443
No 104
>KOG0946|consensus
Probab=94.48 E-value=9 Score=41.77 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 175 LKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRAD 254 (558)
Q Consensus 175 l~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~ 254 (558)
+..+..+...+......+...+.+...-+..++....+.......+--... .+.++-++...+............+...
T Consensus 739 l~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~-~qeqv~El~~~l~e~~~~l~~~q~e~~~ 817 (970)
T KOG0946|consen 739 LNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLG-DQEQVIELLKNLSEESTRLQELQSELTQ 817 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhh-hHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 333333444444444445555555555555555443322211111111111 1223333333344444445555556666
Q ss_pred HHHHHHHHHHHHHh
Q psy8739 255 LARELEELGERLEE 268 (558)
Q Consensus 255 l~~el~~l~~~l~~ 268 (558)
++.++..+......
T Consensus 818 ~keq~~t~~~~tsa 831 (970)
T KOG0946|consen 818 LKEQIQTLLERTSA 831 (970)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666665554443
No 105
>PRK11281 hypothetical protein; Provisional
Probab=94.36 E-value=13 Score=43.27 Aligned_cols=46 Identities=9% Similarity=0.114 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 510 RRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENK 555 (558)
Q Consensus 510 ~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~ 555 (558)
..-..+...+......++.+..+....++.++.+......++.+..
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~ 330 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQIS 330 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777777777777777776665544
No 106
>KOG1029|consensus
Probab=94.26 E-value=9.6 Score=41.25 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhhh
Q psy8739 364 IAKQLQHQLNEVQGKL 379 (558)
Q Consensus 364 ~~~~le~~l~el~~~l 379 (558)
.+..+...|.+++..+
T Consensus 487 ei~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 487 EIDQLQARIKELQEKL 502 (1118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 107
>KOG0946|consensus
Probab=94.25 E-value=10 Score=41.42 Aligned_cols=19 Identities=58% Similarity=0.534 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8739 223 QIKELQARIEELEEEVEAE 241 (558)
Q Consensus 223 ~~~~lq~~i~~l~~el~~~ 241 (558)
..+.++...++|.+++...
T Consensus 679 ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 679 MEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 108
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.25 E-value=3.5 Score=38.68 Aligned_cols=55 Identities=24% Similarity=0.389 Sum_probs=43.4
Q ss_pred hhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q psy8739 162 GDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGL 216 (558)
Q Consensus 162 ~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~ 216 (558)
..+++.+.++..++..-..+|.-+.+.....-..+.+++.++..++..++..+..
T Consensus 77 ~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 77 ENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888887777788888888888888888888888888888776544
No 109
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.18 E-value=5.9 Score=38.47 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=23.3
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 379 LDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEE 438 (558)
Q Consensus 379 l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~ 438 (558)
+.++...+..+...+.+-..+......++..+-..+..+....+.+..+-.++...+...
T Consensus 208 L~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 208 LSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333334443333333333333333333333333333343444444444444444433
No 110
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.61 E-value=3.6 Score=34.12 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 451 NLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 451 ~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
.++.++..++..|+-.-.-..+-...+..+..++.++|.-|.
T Consensus 72 ~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333334445555666666665554
No 111
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.54 E-value=7 Score=37.14 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=19.7
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8739 335 HERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDE 381 (558)
Q Consensus 335 ~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e 381 (558)
..+..++.+++.|..+++.+.....+..+++..+...+..++..+..
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~ 91 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAE 91 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444433
No 112
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.44 E-value=3.3 Score=33.08 Aligned_cols=30 Identities=0% Similarity=0.179 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy8739 311 KHNDAVSEMGEQIDQLNKLKTKAEHERNAA 340 (558)
Q Consensus 311 ~~~~~i~~L~~~le~~~~~k~~le~~~~~l 340 (558)
.++..+..|+..++....+...+.+++..|
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L 42 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQL 42 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHH
Confidence 344455555555555444444444444333
No 113
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.34 E-value=13 Score=39.65 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=22.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy8739 502 LEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQ 544 (558)
Q Consensus 502 ~ee~k~~~~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~ 544 (558)
++..+..+..+.....++..++++......-|..+-.++.+..
T Consensus 340 ~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 340 IERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433344455555555555555555555555555555543
No 114
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.09 E-value=6.1 Score=37.01 Aligned_cols=9 Identities=33% Similarity=0.110 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy8739 396 LSIENSDLL 404 (558)
Q Consensus 396 le~e~~~l~ 404 (558)
+..++.-|+
T Consensus 86 ~~eey~~Lk 94 (230)
T PF10146_consen 86 LYEEYKPLK 94 (230)
T ss_pred HHHHHHHHH
Confidence 333333333
No 115
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.84 E-value=15 Score=41.50 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHH
Q psy8739 427 QLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKA-DLQRQLSKANADAQLWRTKYESEGVARAEELEES 505 (558)
Q Consensus 427 ~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~-~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~ 505 (558)
.+.++..++.........+...+..-.-.+..++.++.++..... ++...+..+..++...+.+.. .+...+...
T Consensus 289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~----~L~~~l~~~ 364 (754)
T TIGR01005 289 LIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARES----QLVSDVNQL 364 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 344444444444333334444443333344444444444433321 122222233333333333222 222333334
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy8739 506 KSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEA 543 (558)
Q Consensus 506 k~~~~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~ 543 (558)
+..+..+.....++..++++......-|..+-.++.+.
T Consensus 365 ~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 365 KAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333444444445555555555555555555444443
No 116
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.77 E-value=4.2 Score=32.49 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 431 TKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRT 489 (558)
Q Consensus 431 l~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~ 489 (558)
|...+..+...+.+....+..++..+..+...++...-++..++..+.+...+.+.+.-
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel 100 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILEL 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33333334444445555555556666666666666655665666655555555544433
No 117
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.61 E-value=5.2 Score=33.19 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=11.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHH
Q psy8739 191 ELEQTIQRKDKEIASLTAKLEDEQG 215 (558)
Q Consensus 191 ~le~~~~~l~~el~~l~~~le~~~~ 215 (558)
.+...+++++.|+..++.++.....
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~ 44 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEA 44 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 118
>KOG0995|consensus
Probab=92.61 E-value=15 Score=38.53 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=11.2
Q ss_pred HHHHhchHHHHHHHHHHHHHHHH
Q psy8739 446 LGKFRNLEHDIDNIREQLEEEAE 468 (558)
Q Consensus 446 ~~~~~~le~e~~~l~~~lee~~~ 468 (558)
...+...+-+++.+....++...
T Consensus 516 ~~~v~s~e~el~~~~~~~~eer~ 538 (581)
T KOG0995|consen 516 EELVKSIELELDRMVATGEEERQ 538 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555554443
No 119
>KOG0994|consensus
Probab=92.47 E-value=23 Score=40.33 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8739 419 KIKISLTTQLEDTKRLAD 436 (558)
Q Consensus 419 ~~~~~l~~~l~el~~~le 436 (558)
+....+..++.+|...++
T Consensus 1612 ~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1612 KLATSATQQLGELETRME 1629 (1758)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 120
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.19 E-value=10 Score=35.66 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 424 LTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 424 l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
+..+...+-..++.+.+.+..+...+..-+..+.++..++..... .+..++.++..++..|+
T Consensus 65 LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kk-------qie~Leqelkr~KsELE 126 (307)
T PF10481_consen 65 LKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKK-------QIEKLEQELKRCKSELE 126 (307)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 333444444455555555666666665556666666555554433 44445555555555554
No 121
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.19 E-value=24 Score=39.86 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=8.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHH
Q psy8739 526 CRNYSTELFRLKGAYEEAQEQLE 548 (558)
Q Consensus 526 ~~~~e~e~~~l~~~l~e~~~~~~ 548 (558)
...+..++...+.-|..+..+++
T Consensus 378 ~~~L~Re~~~~~~~Y~~ll~r~~ 400 (754)
T TIGR01005 378 LDALQRDAAAKRQLYESYLTNYR 400 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 122
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.89 E-value=14 Score=36.36 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=24.5
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 445 LLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLW 487 (558)
Q Consensus 445 l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~ 487 (558)
+..+...++.++..+-...+++...++.+.....+++.++..+
T Consensus 138 ~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 138 LREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555666666666666666666666543
No 123
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.98 E-value=29 Score=38.42 Aligned_cols=53 Identities=26% Similarity=0.384 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy8739 219 KNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGG 271 (558)
Q Consensus 219 ~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~ 271 (558)
.+...+..+...+..+..+++........+......+...+.++...+...+|
T Consensus 206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG 258 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG 258 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445555666666666666666666666666677777777777777776554
No 124
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.83 E-value=14 Score=34.52 Aligned_cols=104 Identities=20% Similarity=0.358 Sum_probs=46.7
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q psy8739 450 RNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNY 529 (558)
Q Consensus 450 ~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~~~ 529 (558)
+.++..+..+...+.........+...+..+...+..|..+...-+..- .-+-++.-+.....+...+..++..+..+
T Consensus 33 rd~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g--~edLAr~al~~k~~~e~~~~~l~~~~~~~ 110 (221)
T PF04012_consen 33 RDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG--REDLAREALQRKADLEEQAERLEQQLDQA 110 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444455555555555555543211111 11112222234444444455555555555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 530 STELFRLKGAYEEAQEQLEAVRRENK 555 (558)
Q Consensus 530 e~e~~~l~~~l~e~~~~~~~l~~~~~ 555 (558)
...+..++..+..++..+..++....
T Consensus 111 ~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 111 EAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554443
No 125
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=90.27 E-value=15 Score=34.76 Aligned_cols=93 Identities=18% Similarity=0.191 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 400 NSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSK 479 (558)
Q Consensus 400 ~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~ 479 (558)
|.+|+..+.+....+.+-...+..+..+|.-++..+-++..-+-.++-.++..+.+|..|+.-++-.......-.+-|.+
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQK 149 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHH
Confidence 34444444444444444445555566677777777777777777888888888888888888888777766666667777
Q ss_pred HHHHHHHHHHhhH
Q psy8739 480 ANADAQLWRTKYE 492 (558)
Q Consensus 480 l~~e~~~~k~kle 492 (558)
.-.+|..-..+|+
T Consensus 150 YFvDINiQN~KLE 162 (305)
T PF15290_consen 150 YFVDINIQNKKLE 162 (305)
T ss_pred HHhhhhhhHhHHH
Confidence 7777777777776
No 126
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.65 E-value=21 Score=34.75 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Q psy8739 452 LEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYST 531 (558)
Q Consensus 452 le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~~~e~ 531 (558)
+...+..|...+..-.......+..|..+-.++..+..++. .+..+-+++...+......+.. +..++.++..
T Consensus 211 An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k----~~~~EnEeL~q~L~~ske~Q~~---L~aEL~elqd 283 (306)
T PF04849_consen 211 ANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCK----QLAAENEELQQHLQASKESQRQ---LQAELQELQD 283 (306)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 33444444444444444444444555555555555555554 3333444444333222222222 3555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8739 532 ELFRLKGAYEEAQEQLEAVRR 552 (558)
Q Consensus 532 e~~~l~~~l~e~~~~~~~l~~ 552 (558)
.|..+-.-+.+..+.+..+++
T Consensus 284 kY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 284 KYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 666666666666666665543
No 127
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.61 E-value=21 Score=34.69 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=10.3
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHHH
Q psy8739 204 ASLTAKLEDEQGLVGKNQKQIKELQ 228 (558)
Q Consensus 204 ~~l~~~le~~~~~~~~~~~~~~~lq 228 (558)
..++..++.....+..+...++.+.
T Consensus 37 ~~Lk~El~~ek~~~~~L~~e~~~lr 61 (310)
T PF09755_consen 37 RVLKRELETEKARCKHLQEENRALR 61 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334333334444444444443
No 128
>KOG1899|consensus
Probab=89.60 E-value=31 Score=36.59 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q psy8739 386 LNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKR-LADEEGRERATLLGKFRNLEHDIDNIREQLE 464 (558)
Q Consensus 386 ~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~-~le~~~~~~~~l~~~~~~le~e~~~l~~~le 464 (558)
+..++.++-.|-.++.+|+-.+-.++....+.+...+..+..+.++.. .+.+....+..+...++....++..|+.+..
T Consensus 169 rtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~ 248 (861)
T KOG1899|consen 169 RTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRS 248 (861)
T ss_pred hhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHh
Confidence 344555555555566666655555555554555555555666655553 2555556666666666666777776666665
Q ss_pred HHH
Q psy8739 465 EEA 467 (558)
Q Consensus 465 e~~ 467 (558)
+-.
T Consensus 249 eK~ 251 (861)
T KOG1899|consen 249 EKN 251 (861)
T ss_pred hhh
Confidence 443
No 129
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=89.56 E-value=23 Score=35.13 Aligned_cols=90 Identities=19% Similarity=0.295 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q psy8739 316 VSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKK 395 (558)
Q Consensus 316 i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~ 395 (558)
+..++.+|...+..+..++.++.....++......-+........+.+...+....+..+..+..+.+..+..+-.+...
T Consensus 83 lr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~q 162 (499)
T COG4372 83 LRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQ 162 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333333333333333333333333333333444444444444444444444444444
Q ss_pred HHHHHHHHHH
Q psy8739 396 LSIENSDLLR 405 (558)
Q Consensus 396 le~e~~~l~~ 405 (558)
+..+...+..
T Consensus 163 l~aq~qsl~a 172 (499)
T COG4372 163 LEAQAQSLQA 172 (499)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 130
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.32 E-value=14 Score=32.19 Aligned_cols=51 Identities=14% Similarity=0.196 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 383 NRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKR 433 (558)
Q Consensus 383 ~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~ 433 (558)
......+...+.++..++..+...+..+...+..+.+....+......+..
T Consensus 51 ~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~ 101 (151)
T PF11559_consen 51 MEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK 101 (151)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555544444444444444443333333333333
No 131
>KOG0963|consensus
Probab=88.93 E-value=35 Score=36.32 Aligned_cols=139 Identities=18% Similarity=0.262 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 173 GDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQR 252 (558)
Q Consensus 173 ~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~ 252 (558)
......++++..+.+....+.......+.++.++++.++.+... ..+.|.-+..+|+......-.+++++
T Consensus 189 ~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~----------k~aev~lim~eLe~aq~ri~~lE~e~ 258 (629)
T KOG0963|consen 189 DEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAA----------KAAEVSLIMTELEDAQQRIVFLEREV 258 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555566666666666666666666666666665444322 23334444444544444444445555
Q ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHH
Q psy8739 253 ADLARELEELGERLEEAGGATSAQIELNKK-REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQ 325 (558)
Q Consensus 253 ~~l~~el~~l~~~l~~~~~~~~~~~e~~~~-~e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L~~~le~ 325 (558)
..|..++....+...-..+..++.....-. .+.++..|-.+++....++..+++ .|..+|..|..++..
T Consensus 259 e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e----~~~~qI~~le~~l~~ 328 (629)
T KOG0963|consen 259 EQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEERE----KHKAQISALEKELKA 328 (629)
T ss_pred HHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 555555554444333322222222222111 256666676666666555444333 344455555555543
No 132
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=88.46 E-value=25 Score=33.95 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy8739 473 LQRQLSKANADAQLWRTKY 491 (558)
Q Consensus 473 l~~~l~~l~~e~~~~k~kl 491 (558)
+...+...+..+.+++.-+
T Consensus 183 i~~~L~~~~~kL~Dl~~~l 201 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLL 201 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 133
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.28 E-value=21 Score=32.85 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q psy8739 315 AVSEMGEQIDQLNKLKTKAEHERNAAHNETNNT 347 (558)
Q Consensus 315 ~i~~L~~~le~~~~~k~~le~~~~~le~e~~~l 347 (558)
-|..|..++..+.+.-...++....+..+...+
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L 60 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRL 60 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544443333344444444443333
No 134
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.26 E-value=29 Score=34.60 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q psy8739 422 ISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIRE 461 (558)
Q Consensus 422 ~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~ 461 (558)
..+.....-+...+..+......+......+..++..++.
T Consensus 159 ~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 159 ELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444443333
No 135
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.86 E-value=31 Score=34.36 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy8739 363 KIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLL 404 (558)
Q Consensus 363 ~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~ 404 (558)
.....+..+..+++..+..+-..+..+..+...+...-..|.
T Consensus 137 Q~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 137 QELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444433344444444444444444444
No 136
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.67 E-value=8.4 Score=27.64 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q psy8739 320 GEQIDQLNKLKTKAEHERNA 339 (558)
Q Consensus 320 ~~~le~~~~~k~~le~~~~~ 339 (558)
++.|+...+.+..+..++..
T Consensus 3 QsaL~~EirakQ~~~eEL~k 22 (61)
T PF08826_consen 3 QSALEAEIRAKQAIQEELTK 22 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333
No 137
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=87.46 E-value=28 Score=33.52 Aligned_cols=118 Identities=13% Similarity=0.177 Sum_probs=50.5
Q ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739 371 QLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFR 450 (558)
Q Consensus 371 ~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~ 450 (558)
....+....+........+...+..+...+..+..++..+... ...-....+...+.+.+.-+.++... ++.....
T Consensus 74 ~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~--~~~~~~~~l~~~l~ea~~mL~emr~r--~f~~~~~ 149 (264)
T PF06008_consen 74 KAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNEN--GDQLPSEDLQRALAEAQRMLEEMRKR--DFTPQRQ 149 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--cCCCCHHHHHHHHHHHHHHHHHHHhc--cchhHHH
Confidence 3333333333333344444455555555555555444444330 00112233444444444444444322 2444455
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhH
Q psy8739 451 NLEHDIDNIREQLEEEAEGKADL----QRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 451 ~le~e~~~l~~~lee~~~~~~~l----~~~l~~l~~e~~~~k~kle 492 (558)
.++.++.....-+.......... ......+...+..+..++.
T Consensus 150 ~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~ 195 (264)
T PF06008_consen 150 NAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQ 195 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544444433222 2333344444455544443
No 138
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.07 E-value=46 Score=35.49 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy8739 511 RVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAV 550 (558)
Q Consensus 511 ~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l 550 (558)
.+..-...+...+.+...+..++...+..|..+..+++..
T Consensus 342 ~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea 381 (498)
T TIGR03007 342 RLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESA 381 (498)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444555555555555555555555555543
No 139
>KOG4593|consensus
Probab=86.52 E-value=52 Score=35.61 Aligned_cols=17 Identities=6% Similarity=-0.034 Sum_probs=7.7
Q ss_pred HHHHhHHHHHHHHHHHH
Q psy8739 338 NAAHNETNNTRAAADQL 354 (558)
Q Consensus 338 ~~le~e~~~l~~~le~~ 354 (558)
..++-+.-++.+.+...
T Consensus 302 ~~LELeN~~l~tkL~rw 318 (716)
T KOG4593|consen 302 LGLELENEDLLTKLQRW 318 (716)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 140
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.25 E-value=30 Score=32.51 Aligned_cols=67 Identities=13% Similarity=0.293 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 425 TTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY 491 (558)
Q Consensus 425 ~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl 491 (558)
..-|.++....+.+...+......++.+..++..|...+......+......+..+-.++.-++...
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~i 97 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEI 97 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666667777777777776666666666666555555555444444444333
No 141
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.09 E-value=24 Score=32.23 Aligned_cols=68 Identities=19% Similarity=0.356 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 425 TTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 425 ~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
.....+++..+++....+..+...+..++.++..++..+..+....+.|.....++-.++..++.+++
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 33444555555555555666666666666666666666666666666666555555555555555554
No 142
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=85.81 E-value=1.8 Score=42.24 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 402 DLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLAD 436 (558)
Q Consensus 402 ~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le 436 (558)
.|+..+..+...+..++.......-.|.+|+.++.
T Consensus 116 ~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~ 150 (326)
T PF04582_consen 116 DLQSSVSALSTDVSNLKSDVSTQALNITDLESRVK 150 (326)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHH
Confidence 33333333333333333333333444444444333
No 143
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=85.69 E-value=45 Score=34.13 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 415 SQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQL 477 (558)
Q Consensus 415 ~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l 477 (558)
.+..+.++.++.-+...+..|.+-...+..++-+++.+...+..|+..|.-....++..-.+.
T Consensus 386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqc 448 (527)
T PF15066_consen 386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQC 448 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 455677788888888899999999999999999999999999999999988776665544433
No 144
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=85.22 E-value=35 Score=32.48 Aligned_cols=79 Identities=23% Similarity=0.386 Sum_probs=34.1
Q ss_pred HHhhHHhhHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 167 QKRKIEGDLKLTQEAVAD-LERNKKELEQTIQRKDKEIASLTAKLEDEQGLV-GKNQKQIKELQARIEELEEEVEAERQS 244 (558)
Q Consensus 167 ~k~~le~el~~~~~~~~~-~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~-~~~~~~~~~lq~~i~~l~~el~~~~~~ 244 (558)
....++..+..+...+.. .......+...+..+...+..+...+......+ ..++.....+...+..|...++.++..
T Consensus 64 lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~ 143 (247)
T PF06705_consen 64 LQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNE 143 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443321 222233333333333344444444433333322 234444455555666666666655544
Q ss_pred H
Q psy8739 245 R 245 (558)
Q Consensus 245 ~ 245 (558)
+
T Consensus 144 R 144 (247)
T PF06705_consen 144 R 144 (247)
T ss_pred H
Confidence 4
No 145
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=84.95 E-value=13 Score=27.40 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 425 TTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANAD 483 (558)
Q Consensus 425 ~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e 483 (558)
+..+..|+..++.+.+.........+.+..+.+..-.++.........|...+..+..+
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444454455444444444444444444444333333
No 146
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.77 E-value=37 Score=32.36 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=21.9
Q ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8739 331 TKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKL 379 (558)
Q Consensus 331 ~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l 379 (558)
..+..++..|...+.++...+.............++.++.+|..+...+
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444
No 147
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.24 E-value=43 Score=32.65 Aligned_cols=91 Identities=19% Similarity=0.248 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy8739 176 KLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQG-LVGKNQKQIKELQARIEELEEEVEAERQ-SRAKAEKQRA 253 (558)
Q Consensus 176 ~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~-~~~~~~~~~~~lq~~i~~l~~el~~~~~-~~~~~~~~~~ 253 (558)
..++..+......+..|...+..+......+....+.+.. ..+.+-+++..+...-..|-..++.+.. ....+.+...
T Consensus 37 ~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~ 116 (310)
T PF09755_consen 37 RVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLN 116 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555554444444444444444333222 2345555555555555555444444322 2234444555
Q ss_pred HHHHHHHHHHHHH
Q psy8739 254 DLARELEELGERL 266 (558)
Q Consensus 254 ~l~~el~~l~~~l 266 (558)
.|..+..++...+
T Consensus 117 qLr~EK~~lE~~L 129 (310)
T PF09755_consen 117 QLRQEKVELENQL 129 (310)
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444443
No 148
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=83.95 E-value=15 Score=27.15 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=11.1
Q ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHHHHHH
Q psy8739 371 QLNEVQGKLDETNRSLNDFDAAKKKLSIEN 400 (558)
Q Consensus 371 ~l~el~~~l~e~~~~~~~l~~~~~~le~e~ 400 (558)
.+..|+..++.+.+.+.......+.+..+.
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ER 35 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRER 35 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 149
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=83.85 E-value=24 Score=29.52 Aligned_cols=31 Identities=6% Similarity=0.254 Sum_probs=16.6
Q ss_pred hhHHHHHhhHHhhHHHHHHHHHHHHHHHHHH
Q psy8739 162 GDVEKQKRKIEGDLKLTQEAVADLERNKKEL 192 (558)
Q Consensus 162 ~~le~~k~~le~el~~~~~~~~~~~~~~~~l 192 (558)
..+..+|+.|...+..+-..+++...-....
T Consensus 57 ~~l~~tKkhLsqRId~vd~klDe~~ei~~~i 87 (126)
T PF07889_consen 57 ESLSSTKKHLSQRIDRVDDKLDEQKEISKQI 87 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3345666666666666555555444433333
No 150
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.36 E-value=27 Score=32.15 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy8739 146 LEQENGGLKKDI 157 (558)
Q Consensus 146 l~~~~~~l~~~~ 157 (558)
++.++..++.++
T Consensus 98 le~el~~l~~~l 109 (206)
T PRK10884 98 LENQVKTLTDKL 109 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 151
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.20 E-value=1.2e+02 Score=36.93 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 453 EHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 453 e~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
..++..+...+.........+...+..+..++..+...+.
T Consensus 881 ~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~ 920 (1353)
T TIGR02680 881 RARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVG 920 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444554444444444555555555555544443
No 152
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.04 E-value=38 Score=31.12 Aligned_cols=103 Identities=20% Similarity=0.335 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy8739 364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIK---ISLTTQLEDTKRLADEEGR 440 (558)
Q Consensus 364 ~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~---~~l~~~l~el~~~le~~~~ 440 (558)
-++.|..+|.+++...........++.....++..-+..+...+.++...+....+.+ ..+...+..+...+..+.-
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~ 107 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKW 107 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777766666666666666666666666666666666555554444332 2334445555555555555
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHH
Q psy8739 441 ERATLLGKFRNLEHDIDNIREQLEEE 466 (558)
Q Consensus 441 ~~~~l~~~~~~le~e~~~l~~~lee~ 466 (558)
....+...+..++.+.+.|...++..
T Consensus 108 e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 108 EHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544433
No 153
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.01 E-value=1.2e+02 Score=36.87 Aligned_cols=39 Identities=10% Similarity=0.108 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 453 EHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY 491 (558)
Q Consensus 453 e~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl 491 (558)
...+.....++++...........+..+..++.....++
T Consensus 874 ~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l 912 (1353)
T TIGR02680 874 ATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRL 912 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444
No 154
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=83.01 E-value=51 Score=32.52 Aligned_cols=13 Identities=31% Similarity=0.261 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhch
Q psy8739 440 RERATLLGKFRNL 452 (558)
Q Consensus 440 ~~~~~l~~~~~~l 452 (558)
..++.+.....++
T Consensus 161 ~ERD~yk~K~~RL 173 (319)
T PF09789_consen 161 TERDAYKCKAHRL 173 (319)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 155
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=82.48 E-value=35 Score=30.33 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 358 KAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIE----NSDLLRQ---LEEAESQVSQLSKIKISLTTQLED 430 (558)
Q Consensus 358 ~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e----~~~l~~~---l~e~~~~~~~~~~~~~~l~~~l~e 430 (558)
...++.+|.-|+.++.-++.-+......++.+-..--.+..+ ..++..+ ++-++..+..+.......+..|..
T Consensus 66 L~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~ 145 (178)
T PF14073_consen 66 LSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKE 145 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666555554444433332222222 2222222 222333444444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhch
Q psy8739 431 TKRLADEEGRERATLLGKFRNL 452 (558)
Q Consensus 431 l~~~le~~~~~~~~l~~~~~~l 452 (558)
|...+-++...+.-++.....+
T Consensus 146 LE~KL~eEehqRKlvQdkAaqL 167 (178)
T PF14073_consen 146 LEEKLQEEEHQRKLVQDKAAQL 167 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444444333
No 156
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=82.42 E-value=39 Score=30.79 Aligned_cols=8 Identities=25% Similarity=0.476 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q psy8739 316 VSEMGEQI 323 (558)
Q Consensus 316 i~~L~~~l 323 (558)
|.-|..+|
T Consensus 12 IsLLKqQL 19 (202)
T PF06818_consen 12 ISLLKQQL 19 (202)
T ss_pred HHHHHHHH
Confidence 44444444
No 157
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.27 E-value=8 Score=25.83 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 451 NLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 451 ~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
.++.+++.|+..++.+......|......+..++..++.++.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467888888888888888888888888888888887776653
No 158
>KOG0249|consensus
Probab=81.97 E-value=82 Score=34.25 Aligned_cols=34 Identities=12% Similarity=0.369 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy8739 511 RVDDLAAELDASQKECRNYSTELFRLKGAYEEAQ 544 (558)
Q Consensus 511 ~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~ 544 (558)
.+..+...++.+......+...+..|+..++.+.
T Consensus 224 e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 224 ELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333444444444444444444444444443
No 159
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=81.67 E-value=73 Score=33.44 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhH
Q psy8739 511 RVDDLAAELDASQKECRNYSTE 532 (558)
Q Consensus 511 ~~~~l~~~~~~~~~~~~~~e~e 532 (558)
.+..+..-++.++..++.++.+
T Consensus 469 nm~~v~~~v~~a~~~m~~l~~~ 490 (570)
T COG4477 469 NMEAVSALVDIATEDMNTLEDE 490 (570)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667777777766663
No 160
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.61 E-value=26 Score=32.01 Aligned_cols=60 Identities=27% Similarity=0.318 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 351 ADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEA 410 (558)
Q Consensus 351 le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~ 410 (558)
++.....+..+-+....++..+.+.+..+.......+.+....+++..+...|...++++
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 333333333333333334444444444333333333444444444444444444444443
No 161
>KOG0995|consensus
Probab=80.27 E-value=84 Score=33.28 Aligned_cols=61 Identities=21% Similarity=0.410 Sum_probs=29.4
Q ss_pred HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q psy8739 164 VEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARI 231 (558)
Q Consensus 164 le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i 231 (558)
+++.+..|..++...+.-+..+......++..+.++ ...++.....+..++..+..|...|
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l-------~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEML-------KSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666655555555555555554444333 3333333333444444444444444
No 162
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=79.43 E-value=6.2 Score=31.56 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=34.3
Q ss_pred HHHHHHHHhHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q psy8739 328 KLKTKAEHERNAAHNETNNTRAAA-DQLAREKAATEKIAKQLQHQLNEVQGKLDETNRS 385 (558)
Q Consensus 328 ~~k~~le~~~~~le~e~~~l~~~l-e~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~ 385 (558)
..+..++..+..++.++.+|...| +.++............++.....+...+.+....
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~ 66 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEAL 66 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777776 6666655555555555555555555555444433
No 163
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=78.11 E-value=51 Score=29.53 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy8739 514 DLAAELDASQKECRNYSTELFRLKGAYEEAQEQL 547 (558)
Q Consensus 514 ~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~ 547 (558)
.+..+++.....+..+...+..|++.+..++.++
T Consensus 142 ~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 142 ALLRDYDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555566666666666666666665544
No 164
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=78.07 E-value=1.5e+02 Score=34.90 Aligned_cols=270 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH--HH
Q psy8739 288 SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEK--IA 365 (558)
Q Consensus 288 ~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~--~~ 365 (558)
..++.+++................++..+.-+. +++.....-..+.+........+.++..++..........-. -.
T Consensus 26 ~~iq~~l~~~~~~~~~~~k~~~~~l~~tl~~l~-~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~ 104 (1109)
T PRK10929 26 KQITQELEQAKAAKTPAQAEIVEALQSALNWLE-ERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMST 104 (1109)
T ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCH
Q ss_pred HHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q psy8739 366 KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISL--------TTQLEDTKRLADE 437 (558)
Q Consensus 366 ~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l--------~~~l~el~~~le~ 437 (558)
..++..+......+.+.+.......+..+.....+..+-....+....+.+....+... ..+...++.+...
T Consensus 105 ~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~ 184 (1109)
T PRK10929 105 DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAA 184 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhh--------
Q psy8739 438 EGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEE-------- 509 (558)
Q Consensus 438 ~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~-------- 509 (558)
.......+...+.......+.++.+.+-.......++..+..++..+...+..-.+..........+--...
T Consensus 185 l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~ 264 (1109)
T PRK10929 185 LKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQF 264 (1109)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8739 510 RRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA 558 (558)
Q Consensus 510 ~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~~l~ 558 (558)
..-..+...+......++.+..+....++.++.+...+..++.+..-|+
T Consensus 265 ~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 265 KINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 165
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=77.88 E-value=1.1e+02 Score=33.24 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=21.9
Q ss_pred HHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy8739 486 LWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRL 536 (558)
Q Consensus 486 ~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~~~e~e~~~l 536 (558)
.++++|...........+.++..+..+......+..++.++..+..+|..+
T Consensus 315 ~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 315 RLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKA 365 (563)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444444444444444444333333334444444444444434333
No 166
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.85 E-value=66 Score=30.65 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q psy8739 419 KIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIRE 461 (558)
Q Consensus 419 ~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~ 461 (558)
.....|..++.++...+..+......-......+..++...+.
T Consensus 75 eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 75 EEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554444444444444444444444443
No 167
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=77.76 E-value=62 Score=30.30 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 366 KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAES 412 (558)
Q Consensus 366 ~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~ 412 (558)
+.++.-|.+++..+......+..+....+.++.++..+.......+.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555544433
No 168
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=77.48 E-value=63 Score=30.25 Aligned_cols=104 Identities=24% Similarity=0.333 Sum_probs=50.8
Q ss_pred HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH-----HhhHHHHHHHHHHHHHHHHHHHH
Q psy8739 164 VEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQG-----LVGKNQKQIKELQARIEELEEEV 238 (558)
Q Consensus 164 le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~-----~~~~~~~~~~~lq~~i~~l~~el 238 (558)
++..-+.++.++..+...+.........++..+..+......|..+-..... ....+-..+..++..+..+...+
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~ 108 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAEL 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555555555555555555555443322111 11222233444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 239 EAERQSRAKAEKQRADLARELEELGERLE 267 (558)
Q Consensus 239 ~~~~~~~~~~~~~~~~l~~el~~l~~~l~ 267 (558)
.........+......|+..|.++.....
T Consensus 109 ~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 109 QQAEEQVEKLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555554443
No 169
>KOG1853|consensus
Probab=77.05 E-value=64 Score=30.13 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 409 EAESQVSQLSKIKISLTTQLEDTKRLADE 437 (558)
Q Consensus 409 e~~~~~~~~~~~~~~l~~~l~el~~~le~ 437 (558)
+++.....+++..+....-+.++...|+.
T Consensus 116 eLEQaNDdLErakRati~sleDfeqrLnq 144 (333)
T KOG1853|consen 116 ELEQANDDLERAKRATIYSLEDFEQRLNQ 144 (333)
T ss_pred HHHHhccHHHHhhhhhhhhHHHHHHHHHH
Confidence 33334444444444444445555555544
No 170
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=76.43 E-value=61 Score=29.56 Aligned_cols=96 Identities=13% Similarity=0.158 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 342 NETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIK 421 (558)
Q Consensus 342 ~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~ 421 (558)
++|.-|..++...+.....-...+-.|..++.++++.+.........+......-..++.....++........-+....
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl 89 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKL 89 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhh
Confidence 45555666666655555555556667777777777777666666555555444434444444444433333333333444
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8739 422 ISLTTQLEDTKRLADE 437 (558)
Q Consensus 422 ~~l~~~l~el~~~le~ 437 (558)
..+..++..++..+..
T Consensus 90 ~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 90 GQLEAELAELREELAC 105 (202)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 4555555555555444
No 171
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=75.94 E-value=31 Score=25.95 Aligned_cols=53 Identities=26% Similarity=0.385 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy8739 219 KNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGG 271 (558)
Q Consensus 219 ~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~ 271 (558)
-++..+.+|..+-..|..+.+..+..+..+..++..|..+...++.++....|
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555555666666777777777777777777665443
No 172
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=75.61 E-value=85 Score=30.82 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 237 EVEAERQSRAKAEKQRADLARELEEL 262 (558)
Q Consensus 237 el~~~~~~~~~~~~~~~~l~~el~~l 262 (558)
+++..+.....+..+...|...|...
T Consensus 141 elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 141 ELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444333
No 173
>KOG1899|consensus
Probab=75.34 E-value=1.2e+02 Score=32.45 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 418 SKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIR-EQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 418 ~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~-~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
+..+-.+-.++.+|+-.+-.+.+.+......++..+..+..+. ....+....+..++..+.....+++.++.+..
T Consensus 173 ETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~ 248 (861)
T KOG1899|consen 173 ETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRS 248 (861)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHh
Confidence 3334445556666666666666666666666666666555553 33455555666666666666677777777665
No 174
>PRK09343 prefoldin subunit beta; Provisional
Probab=74.22 E-value=50 Score=27.51 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 122 SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIED 159 (558)
Q Consensus 122 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~ 159 (558)
++.....+.........+..++..+..++.+...-++.
T Consensus 9 ~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~E 46 (121)
T PRK09343 9 VQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEE 46 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666666666555544
No 175
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=72.96 E-value=1.7e+02 Score=32.96 Aligned_cols=250 Identities=16% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8739 302 ESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDE 381 (558)
Q Consensus 302 ~~~~~~lr~~~~~~i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e 381 (558)
++.+..|. +-..++..|..+|+.....+..++-....|.+.+.+.-.++..+...... +-...+-..-.++...-.+
T Consensus 13 eeav~gwe-kae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq--~i~~~~~~~s~e~e~~~~~ 89 (769)
T PF05911_consen 13 EEAVSGWE-KAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQ--KIHEAVAKKSKEWEKIKSE 89 (769)
T ss_pred HHHHhhHH-HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH--HHHHHHHHHhHHHHHHHHH
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q psy8739 382 TNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIRE 461 (558)
Q Consensus 382 ~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~ 461 (558)
++..+.++...+..+..++..+...+.+-...+..+...+.....++..+...|+...+.+.+|.-.+..+..+++.-..
T Consensus 90 le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~ 169 (769)
T PF05911_consen 90 LEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNE 169 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHhH------HhhhhHHHHHHHhhh-------------------
Q psy8739 462 QLEEEAEGKADLQ-------RQLSKANADAQLWRTKYESE------GVARAEELEESKSEE------------------- 509 (558)
Q Consensus 462 ~lee~~~~~~~l~-------~~l~~l~~e~~~~k~kle~~------~~~~~~~~ee~k~~~------------------- 509 (558)
..+=..++..... +.|.+|..++..|+.-.-.. +..-..+++..-+..
T Consensus 170 E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~ 249 (769)
T PF05911_consen 170 EREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFS 249 (769)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCCccccccccc
Q ss_pred ---------------hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739 510 ---------------RRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRREN 554 (558)
Q Consensus 510 ---------------~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~~ 554 (558)
..+..+..+--.+...+..-..++.-.|..|...-.++..+..+.
T Consensus 250 ~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 250 PQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 176
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=72.00 E-value=39 Score=25.34 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhh
Q psy8739 3 TEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQ 69 (558)
Q Consensus 3 ~e~~~~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~q 69 (558)
+++..+.-..+|..+....+.+..........+.+|...+.++...+..+...+.........+...
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888899999888888888888888888888888888888777777666666555554443
No 177
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=72.00 E-value=1.2e+02 Score=30.77 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 365 AKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEE 409 (558)
Q Consensus 365 ~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e 409 (558)
.+.....+++.+..+......+..+...+..+..++...+.++++
T Consensus 275 Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 275 YRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444333333344444444444444444444433
No 178
>KOG0804|consensus
Probab=71.18 E-value=1.3e+02 Score=30.91 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 417 LSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY 491 (558)
Q Consensus 417 ~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl 491 (558)
.++....++..+..+..++..+...+..+..........+..+..++.+. +......+..|+.++.++-.-+
T Consensus 380 ~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~---~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 380 VERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEA---LGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHheeh
Confidence 33444444444444444444444444444444333333333333333322 2233334444444444444433
No 179
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=71.02 E-value=62 Score=27.16 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q psy8739 312 HNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQL 354 (558)
Q Consensus 312 ~~~~i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~ 354 (558)
+......+-.+|++.. ..+...+..|...++.+...++..
T Consensus 41 m~~A~~~v~kql~~vs---~~l~~tKkhLsqRId~vd~klDe~ 80 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVS---ESLSSTKKHLSQRIDRVDDKLDEQ 80 (126)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3333444444444333 223344445555555554444443
No 180
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=70.60 E-value=96 Score=33.16 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 223 QIKELQARIEELEEEVEAERQSRAK 247 (558)
Q Consensus 223 ~~~~lq~~i~~l~~el~~~~~~~~~ 247 (558)
++..+..+|..|+..|.........
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555444433333
No 181
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=69.83 E-value=44 Score=24.96 Aligned_cols=48 Identities=13% Similarity=0.324 Sum_probs=23.9
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 445 LLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 445 l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
+...+..++.++..|+............|......+..+-..|..++.
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444455555555555555555655554
No 182
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=69.80 E-value=59 Score=26.49 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 123 QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDL 160 (558)
Q Consensus 123 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~ 160 (558)
+.+...+.........+..++..++.++.+...-++.+
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL 43 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEEL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666777777776666655543
No 183
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=69.46 E-value=1.5e+02 Score=30.97 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Q psy8739 517 AELDASQKECRNYSTELFRLKGAY 540 (558)
Q Consensus 517 ~~~~~~~~~~~~~e~e~~~l~~~l 540 (558)
.++..++++......-|..+-.++
T Consensus 342 ~~~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 342 DEMSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 184
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=69.37 E-value=1.1e+02 Score=29.23 Aligned_cols=15 Identities=27% Similarity=0.373 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy8739 473 LQRQLSKANADAQLW 487 (558)
Q Consensus 473 l~~~l~~l~~e~~~~ 487 (558)
++.++..|..+|..+
T Consensus 187 lq~QL~~L~~EL~~~ 201 (246)
T PF00769_consen 187 LQEQLKELKSELEQL 201 (246)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 185
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=69.18 E-value=65 Score=26.66 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 122 SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE 158 (558)
Q Consensus 122 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e 158 (558)
+.+|.++.+..+-....|+++-.++..++..++..+-
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666666666665554
No 186
>KOG0018|consensus
Probab=69.11 E-value=2.2e+02 Score=32.80 Aligned_cols=198 Identities=15% Similarity=0.243 Sum_probs=95.0
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHH----
Q psy8739 332 KAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQL---- 407 (558)
Q Consensus 332 ~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l---- 407 (558)
.++..+..++..+.-+...++.+.......+.++..++..+......+.+..+.+.......+.|+..+..+...+
T Consensus 680 ~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f 759 (1141)
T KOG0018|consen 680 SVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGF 759 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556677777777777777666666666666666666666655555555544444444444444444433322
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 408 -----------EEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQ 476 (558)
Q Consensus 408 -----------~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~ 476 (558)
++... ..........++.++.-+..+|+=+.. .+....+..++..+..+...++........+...
T Consensus 760 ~~~igv~ir~Yee~~~-~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~ 836 (1141)
T KOG0018|consen 760 CRRIGVRIREYEEREL-QQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKI 836 (1141)
T ss_pred hhhcCeeeehHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence 11111 111122333444555555544443333 4445555555666666666666655555444444
Q ss_pred HHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy8739 477 LSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGA 539 (558)
Q Consensus 477 l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~ 539 (558)
+... .++.. +. .........++.+.+ ..+..+..++..+.+.+..+++.+..+...
T Consensus 837 i~e~-~~~e~-k~--k~~~~~~~~e~~e~~---k~~~~~~~~~tkl~~~i~~~es~ie~~~~e 892 (1141)
T KOG0018|consen 837 IAEI-EELEK-KN--KSKFEKKEDEINEVK---KILRRLVKELTKLDKEITSIESKIERKESE 892 (1141)
T ss_pred HhhH-HHHHH-HH--HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 4443 22222 11 111112223333333 233444444445555555555555444433
No 187
>KOG4593|consensus
Probab=67.90 E-value=1.9e+02 Score=31.57 Aligned_cols=18 Identities=11% Similarity=0.302 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy8739 474 QRQLSKANADAQLWRTKY 491 (558)
Q Consensus 474 ~~~l~~l~~e~~~~k~kl 491 (558)
...+..++.++..++..+
T Consensus 558 k~~~e~LqaE~~~lk~~l 575 (716)
T KOG4593|consen 558 KNRLEELQAELERLKERL 575 (716)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555666666666544
No 188
>KOG0979|consensus
Probab=67.56 E-value=2.3e+02 Score=32.43 Aligned_cols=281 Identities=12% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy8739 192 LEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGG 271 (558)
Q Consensus 192 le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~ 271 (558)
+.......+.++..++..++...+....++.++......++.....+...+..+..+......+......+.....+
T Consensus 627 l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~--- 703 (1072)
T KOG0979|consen 627 LEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVVD--- 703 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q psy8739 272 ATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAA 351 (558)
Q Consensus 272 ~~~~~~e~~~~~e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~l 351 (558)
+...+..+....+..-...+.++ +..+.-.++.....+..-...+..-..-..
T Consensus 704 ---------------l~~qkee~~~~~~~~I~~~~~~~------~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~------ 756 (1072)
T KOG0979|consen 704 ---------------LDRQEEEYAASEAKKILDTEDMR------IQSIRWHLELTDKHKEIGIKEKNESSYMAR------ 756 (1072)
T ss_pred ---------------HHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q psy8739 352 DQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLS--IENSDLLRQLEEAESQVSQ----LSKIKISLT 425 (558)
Q Consensus 352 e~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le--~e~~~l~~~l~e~~~~~~~----~~~~~~~l~ 425 (558)
......+++..+..++..+..+....+.+...+......+..+. ..+..+...+......-.. +......+-
T Consensus 757 --s~~~~iea~~~i~~~e~~i~~~~~~~~~lk~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p 834 (1072)
T KOG0979|consen 757 --SNKNNIEAERKIEKLEDNISFLEAREDLLKTALEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELAEEP 834 (1072)
T ss_pred --HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHHHHhCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHH
Q psy8739 426 TQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEE 504 (558)
Q Consensus 426 ~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee 504 (558)
..+.++-..|-........+..--..+-.+++....++.++..........+..+...+.+.+...-..+......+.+
T Consensus 835 ~t~~eld~~I~~e~t~~~~~~n~ne~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~ 913 (1072)
T KOG0979|consen 835 TTMDELDQAITDELTRALKFENVNEDAVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINE 913 (1072)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
No 189
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=67.42 E-value=53 Score=25.01 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=3.6
Q ss_pred HHHHHhhHh
Q psy8739 485 QLWRTKYES 493 (558)
Q Consensus 485 ~~~k~kle~ 493 (558)
..+|.+|++
T Consensus 56 ~kmK~~YEe 64 (79)
T PF08581_consen 56 RKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 190
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=66.78 E-value=1.8e+02 Score=30.78 Aligned_cols=64 Identities=13% Similarity=0.278 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 425 TTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY 491 (558)
Q Consensus 425 ~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl 491 (558)
..+...+...++.....+..+...+..+...+..|+..+. -.+..++.+++.+-.-+..+..++
T Consensus 440 ~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~---TTr~NYE~QLs~MSEHLasmNeqL 503 (518)
T PF10212_consen 440 YAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE---TTRRNYEEQLSMMSEHLASMNEQL 503 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444443322 223344444444444444444444
No 191
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=66.24 E-value=75 Score=26.30 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 123 QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDL 160 (558)
Q Consensus 123 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~ 160 (558)
+....++.........+.-.+..++.++.+...-++..
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~El 46 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEEL 46 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666777777778888887777666544
No 192
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.24 E-value=2.2e+02 Score=31.62 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8739 246 AKAEKQRADLARELEELGERLEE 268 (558)
Q Consensus 246 ~~~~~~~~~l~~el~~l~~~l~~ 268 (558)
..++.....+..++......+..
T Consensus 265 ~~Le~ei~~le~e~~e~~~~l~~ 287 (650)
T TIGR03185 265 EQLERQLKEIEAARKANRAQLRE 287 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544
No 193
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.05 E-value=98 Score=31.18 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q psy8739 388 DFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEE 466 (558)
Q Consensus 388 ~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~ 466 (558)
.....+...+..+..+...+..+...+.........++.++...+..++...+-..+|.....+-...+..+...+.-+
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhccc
Confidence 3333333344444444444444444444444455555566666666666555555555555555555555555444443
No 194
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=65.46 E-value=1.8e+02 Score=30.38 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy8739 520 DASQKECRNYSTELFRLKGAYEEAQEQLEAV 550 (558)
Q Consensus 520 ~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l 550 (558)
.....+...+..++...+.-|..+..++.+.
T Consensus 338 ~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 338 NRQRDEMSVLQRDVENAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555444
No 195
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=65.41 E-value=1.3e+02 Score=28.74 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 128 RLQQEEDARNQLFQQKKKLEQENGGLKKD 156 (558)
Q Consensus 128 ~l~~~~~~~~~l~~~~~~l~~~~~~l~~~ 156 (558)
.++++..-...|.+.+..|-..|.+.+..
T Consensus 7 sl~el~~h~~~L~~~N~~L~~~IqdtE~s 35 (258)
T PF15397_consen 7 SLQELKKHEDFLTKLNKELIKEIQDTEDS 35 (258)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHhh
Confidence 34444555556666666666666665443
No 196
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=65.26 E-value=1.4e+02 Score=29.26 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy8739 122 SQDTVDRLQQEEDAR 136 (558)
Q Consensus 122 ~~~l~~~l~~~~~~~ 136 (558)
+..+...|.+.++++
T Consensus 79 ~r~lk~~l~evEeky 93 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKY 93 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666655554
No 197
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=65.23 E-value=38 Score=22.64 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=12.6
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHHHHHHHHH
Q psy8739 204 ASLTAKLEDEQGLVGKNQKQIKELQARIEEL 234 (558)
Q Consensus 204 ~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l 234 (558)
+.++..++...+....+.+....|.+++..|
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 198
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=64.12 E-value=1.1e+02 Score=27.36 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy8739 135 ARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLK-------LTQEAVADLERNKKELEQTIQRKDKEIASLT 207 (558)
Q Consensus 135 ~~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~-------~~~~~~~~~~~~~~~le~~~~~l~~el~~l~ 207 (558)
+..+|...+.+|+-+-......+..+..+....+..+..+.. ++.....++.......+..+..++..++.|+
T Consensus 5 ALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMR 84 (178)
T PF14073_consen 5 ALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMR 84 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666655555555555443333333333332221 1112244566667777777777788888888
Q ss_pred HHHHHhHHHh
Q psy8739 208 AKLEDEQGLV 217 (558)
Q Consensus 208 ~~le~~~~~~ 217 (558)
.-+.......
T Consensus 85 kmv~~ae~er 94 (178)
T PF14073_consen 85 KMVESAEKER 94 (178)
T ss_pred HHHHHHHHhh
Confidence 7666544433
No 199
>KOG0249|consensus
Probab=63.94 E-value=2.3e+02 Score=31.09 Aligned_cols=50 Identities=24% Similarity=0.405 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 439 GRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWR 488 (558)
Q Consensus 439 ~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k 488 (558)
...+..+......|..++..+..+|.+....+..+...+..+..++.+++
T Consensus 208 lkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 208 LKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444455555556666666666666666666666666666655555
No 200
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=63.24 E-value=19 Score=28.79 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 384 RSLNDFDAAKKKLSIENSDLLRQL-EEAESQVSQLSKIKISLTTQLEDTKRLA 435 (558)
Q Consensus 384 ~~~~~l~~~~~~le~e~~~l~~~l-~e~~~~~~~~~~~~~~l~~~l~el~~~l 435 (558)
..+..+...+..+..++.+|...+ +++...+....+....++.....+..++
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l 60 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQL 60 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555 2333333444444334444443333333
No 201
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=62.97 E-value=1.4e+02 Score=28.43 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 388 DFDAAKKKLSIENSDLLRQLEEAESQV 414 (558)
Q Consensus 388 ~l~~~~~~le~e~~~l~~~l~e~~~~~ 414 (558)
++.+...+++..+..|..+++.+...+
T Consensus 71 eLqe~eek~e~~l~~Lq~ql~~l~akI 97 (258)
T PF15397_consen 71 ELQEWEEKEESKLSKLQQQLEQLDAKI 97 (258)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333344444444444444443333
No 202
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=62.58 E-value=81 Score=25.42 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 127 DRLQQEEDARNQLFQQKKKLEQENGGLKKDIE 158 (558)
Q Consensus 127 ~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e 158 (558)
..+.........+...+..+..++.+...-.+
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~ 37 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALE 37 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555556666555544443
No 203
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=62.11 E-value=2.1e+02 Score=30.09 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhhHH
Q psy8739 358 KAATEKIAKQLQHQLNEVQGKLDETNRSLN 387 (558)
Q Consensus 358 ~~~~e~~~~~le~~l~el~~~l~e~~~~~~ 387 (558)
...+...+.++..-|..|...+...+..++
T Consensus 260 ~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~ 289 (531)
T PF15450_consen 260 ESKLLEQCRKLDEAVAQLTKFVQQNQKSLN 289 (531)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554444433
No 204
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=60.98 E-value=1.9e+02 Score=29.24 Aligned_cols=48 Identities=17% Similarity=0.476 Sum_probs=29.7
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 445 LLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 445 l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
+...++.+...+..++..|.........+...+..+..++...|..++
T Consensus 271 l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 271 LIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666666666666666666666666666665555
No 205
>KOG1850|consensus
Probab=60.92 E-value=1.7e+02 Score=28.57 Aligned_cols=75 Identities=25% Similarity=0.470 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy8739 472 DLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEE-RRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQL 547 (558)
Q Consensus 472 ~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~-~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~ 547 (558)
.+...+.++..+...|+.+++.--.... .+.+.+.-. ..+..++..+..++.-++.+..+-..+-..+..++...
T Consensus 254 kmtKk~kklEKE~l~wr~K~e~aNk~vL-~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v 329 (391)
T KOG1850|consen 254 KMTKKIKKLEKETLIWRTKWENANKAVL-QLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQV 329 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccc
Confidence 4456677788889999999984321111 122222111 57778888888888888888888877777777766544
No 206
>KOG0962|consensus
Probab=59.38 E-value=3.7e+02 Score=32.01 Aligned_cols=36 Identities=8% Similarity=0.231 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHH
Q psy8739 8 KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENS 43 (558)
Q Consensus 8 ~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~ 43 (558)
..+...+..+..++..+...+..+..........+.
T Consensus 577 ~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e 612 (1294)
T KOG0962|consen 577 HKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDLE 612 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 334444444444444444444444444444444433
No 207
>KOG1853|consensus
Probab=59.15 E-value=1.6e+02 Score=27.67 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 410 AESQVSQLSKIKISLTTQLEDTKR 433 (558)
Q Consensus 410 ~~~~~~~~~~~~~~l~~~l~el~~ 433 (558)
+...++.+.....-++.++.+-..
T Consensus 138 feqrLnqAIErnAfLESELdEke~ 161 (333)
T KOG1853|consen 138 FEQRLNQAIERNAFLESELDEKEV 161 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333333333333334444444333
No 208
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.39 E-value=73 Score=23.23 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy8739 235 EEEVEAERQSRAKAEKQRADLARELEELGERLEEAGG 271 (558)
Q Consensus 235 ~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~ 271 (558)
..+.......+..+++++..+..+-..++.++....|
T Consensus 38 ~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 38 SQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344455555666666666666666666655443
No 209
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=57.17 E-value=70 Score=23.59 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHH
Q psy8739 5 KIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEE 51 (558)
Q Consensus 5 ~~~~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e 51 (558)
...-.|+..++-....++++...+......+.+|+..+..|...+.+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555544444444444444444444443
No 210
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=55.51 E-value=1.3e+02 Score=25.63 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=10.5
Q ss_pred HHHHhHHHhhHHHHHHHHHHHHHHHH
Q psy8739 209 KLEDEQGLVGKNQKQIKELQARIEEL 234 (558)
Q Consensus 209 ~le~~~~~~~~~~~~~~~lq~~i~~l 234 (558)
.+++.....+.+..++..+..++..|
T Consensus 85 EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 85 ELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 33333333334444444444444333
No 211
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=55.31 E-value=1e+02 Score=27.26 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHh
Q psy8739 365 AKQLQHQLNEVQG 377 (558)
Q Consensus 365 ~~~le~~l~el~~ 377 (558)
++.+...+..+..
T Consensus 95 ~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 95 VKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHhc
Confidence 3333344443333
No 212
>KOG4360|consensus
Probab=55.21 E-value=2.7e+02 Score=29.18 Aligned_cols=17 Identities=53% Similarity=0.573 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8739 224 IKELQARIEELEEEVEA 240 (558)
Q Consensus 224 ~~~lq~~i~~l~~el~~ 240 (558)
.+.|+.+.+-|++.++.
T Consensus 92 nk~Lq~~nesLeEqv~~ 108 (596)
T KOG4360|consen 92 NKALQEDNESLEEQVDA 108 (596)
T ss_pred hhhhhhhhhhhHhhhcc
Confidence 33344444444444433
No 213
>KOG4807|consensus
Probab=55.06 E-value=2.3e+02 Score=28.39 Aligned_cols=31 Identities=16% Similarity=0.446 Sum_probs=17.1
Q ss_pred HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHH
Q psy8739 294 LEEANIQHESTLANLRKKHNDAVSEMGEQID 324 (558)
Q Consensus 294 le~~~~~~~~~~~~lr~~~~~~i~~L~~~le 324 (558)
|-.+...|...|+.+.+.|++++.-|+.+-+
T Consensus 343 fAaMEetHQkkiEdLQRqHqRELekLreEKd 373 (593)
T KOG4807|consen 343 FAAMEETHQKKIEDLQRQHQRELEKLREEKD 373 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666666666666655443
No 214
>KOG4360|consensus
Probab=54.88 E-value=2.8e+02 Score=29.15 Aligned_cols=77 Identities=21% Similarity=0.263 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 185 LERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEE 261 (558)
Q Consensus 185 ~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~ 261 (558)
.+.+...+...+..+-.++...........+.+..++++++.+..+.+++..-|....++...+..+.+.++....+
T Consensus 210 tN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE 286 (596)
T KOG4360|consen 210 TNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAE 286 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444555666666666666666655555554444443333333333333
No 215
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=54.84 E-value=84 Score=23.16 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=31.7
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 446 LGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 446 ~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
...+..|+..+.+....++++......-+..|..+...+..+..++.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777777777777777777777777777765
No 216
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=54.68 E-value=2.7e+02 Score=28.90 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy8739 258 ELEELGERLE 267 (558)
Q Consensus 258 el~~l~~~l~ 267 (558)
.++.|..++.
T Consensus 352 ~~d~L~~q~~ 361 (622)
T COG5185 352 NIDELHKQLR 361 (622)
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 217
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=54.24 E-value=1e+02 Score=24.01 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 420 IKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDI----DNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 420 ~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~----~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
....++.++..|+.++.++...+..+...+..--.-+ ..+-....++......++..+..+...+..+..++.
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777776664332111 344445555556666666677777777777666654
No 218
>KOG1937|consensus
Probab=53.95 E-value=2.7e+02 Score=28.73 Aligned_cols=41 Identities=27% Similarity=0.498 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhhhHHHH--HHH---HHHHHHHHHHHHHHHhhcc
Q psy8739 517 AELDASQKECRNYSTELFR--LKG---AYEEAQEQLEAVRRENKNL 557 (558)
Q Consensus 517 ~~~~~~~~~~~~~e~e~~~--l~~---~l~e~~~~~~~l~~~~~~l 557 (558)
..=+.+.++++.++.+++. .+. .++.+...+..++.+|..|
T Consensus 469 ~~tg~~~revrdlE~qI~~E~~k~~l~slEkl~~Dyqairqen~~L 514 (521)
T KOG1937|consen 469 RETGALKREVRDLESQIYVEEQKQYLKSLEKLHQDYQAIRQENDQL 514 (521)
T ss_pred HHcchHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3446667777777776665 333 3444555666666665544
No 219
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=53.72 E-value=1.2e+02 Score=24.42 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 393 KKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEE 438 (558)
Q Consensus 393 ~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~ 438 (558)
+.++...+.-|+.-+-+.......+...++..+..|.-+...++.+
T Consensus 7 YsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL 52 (102)
T PF10205_consen 7 YSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSL 52 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444433
No 220
>PRK10869 recombination and repair protein; Provisional
Probab=53.42 E-value=3.3e+02 Score=29.55 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=27.6
Q ss_pred HHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy8739 483 DAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAY 540 (558)
Q Consensus 483 e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l 540 (558)
.+..++++|-..+.....-.+.++.++..+......+..++.++..+...+..+...|
T Consensus 307 ~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~L 364 (553)
T PRK10869 307 KQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKL 364 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677776444444444445555554444444444444444444444444444333
No 221
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=53.21 E-value=1.9e+02 Score=26.87 Aligned_cols=93 Identities=27% Similarity=0.288 Sum_probs=37.8
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 170 KIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQG-----LVGKNQKQIKELQARIEELEEEVEAERQS 244 (558)
Q Consensus 170 ~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~-----~~~~~~~~~~~lq~~i~~l~~el~~~~~~ 244 (558)
.+...+..++..+.........++..+..+...+..|..+...... .....-.....++..+..|..++......
T Consensus 35 em~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~ 114 (219)
T TIGR02977 35 EMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEET 114 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444443222111 00111113334444555555555444444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8739 245 RAKAEKQRADLARELEEL 262 (558)
Q Consensus 245 ~~~~~~~~~~l~~el~~l 262 (558)
...+......|+..+..+
T Consensus 115 v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 115 LAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444443333333
No 222
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=53.15 E-value=1.4e+02 Score=25.33 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy8739 320 GEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLD 380 (558)
Q Consensus 320 ~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~ 380 (558)
+.+--..++.+...+-++..|...|..|+.+.......+.++.+.++.|+--+...+..+.
T Consensus 10 Q~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~ 70 (134)
T PF08232_consen 10 QTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYK 70 (134)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344555666666777777777777777777777777777777777777766665543
No 223
>PRK04325 hypothetical protein; Provisional
Probab=52.36 E-value=98 Score=23.22 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=35.2
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 445 LLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 445 l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
+...+..|+..+.+....++++......-+..|..+...+..+..++.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566667777888888887777777777777777777777777664
No 224
>PRK10698 phage shock protein PspA; Provisional
Probab=52.23 E-value=2e+02 Score=26.83 Aligned_cols=51 Identities=20% Similarity=0.118 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 363 KIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQ 413 (558)
Q Consensus 363 ~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~ 413 (558)
.-.+.+..-+.++...+.+....+..+....+.++.++..+...+......
T Consensus 24 DP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 24 DPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666676666677777777777777777766666555443
No 225
>PRK00295 hypothetical protein; Provisional
Probab=50.58 E-value=99 Score=22.75 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=32.6
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 446 LGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 446 ~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
...+..|+..+.+....++++......-+..|..+...+..+..++.
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777777777777777766664
No 226
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=49.92 E-value=2.3e+02 Score=26.77 Aligned_cols=51 Identities=25% Similarity=0.317 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 363 KIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQ 413 (558)
Q Consensus 363 ~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~ 413 (558)
..+......+..++..+......+..+......+...+......+.+....
T Consensus 85 q~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~ 135 (240)
T PF12795_consen 85 QRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQ 135 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444444444444443
No 227
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=49.78 E-value=2.4e+02 Score=27.03 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 393 KKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEE 438 (558)
Q Consensus 393 ~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~ 438 (558)
++.+..+|..|+.-++.+...+.+..+.+.+....|.--...++.+
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsL 164 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESL 164 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHH
Confidence 4445555556666666666555555555555555555444444443
No 228
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=49.59 E-value=2.4e+02 Score=26.82 Aligned_cols=70 Identities=31% Similarity=0.525 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q psy8739 199 KDKEIASLTAKLEDEQGL-VGKNQKQIKELQARIEELEEEVEAERQSRA-KAEKQRADLARELEELGERLEE 268 (558)
Q Consensus 199 l~~el~~l~~~le~~~~~-~~~~~~~~~~lq~~i~~l~~el~~~~~~~~-~~~~~~~~l~~el~~l~~~l~~ 268 (558)
++..+..+...+...... ...+...+..|..+|..|...+..++..+. ..+.....|..++.++...++.
T Consensus 68 ~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~ 139 (247)
T PF06705_consen 68 FEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFEN 139 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455444443322 245556666677777777777766655443 3555556666666666665554
No 229
>PRK00736 hypothetical protein; Provisional
Probab=49.25 E-value=1e+02 Score=22.63 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=32.3
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 447 GKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 447 ~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
..+..|+..+.+....++++......-+..|..+...+..+..++.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777777777777777777777766664
No 230
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=48.21 E-value=86 Score=24.22 Aligned_cols=32 Identities=31% Similarity=0.500 Sum_probs=22.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 524 KECRNYSTELFRLKGAYEEAQEQLEAVRRENK 555 (558)
Q Consensus 524 ~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~ 555 (558)
..-.+++.+...+...+...+..+..|+++|.
T Consensus 36 e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 36 EARRSLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 34445556777777777777777777777764
No 231
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=48.21 E-value=2e+02 Score=25.63 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhhH
Q psy8739 479 KANADAQLWRTKYE 492 (558)
Q Consensus 479 ~l~~e~~~~k~kle 492 (558)
.+...+..|+++++
T Consensus 156 ~l~~~i~~l~rk~~ 169 (177)
T PF13870_consen 156 ELRKEIKELERKVE 169 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555554
No 232
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=47.31 E-value=3.7e+02 Score=28.40 Aligned_cols=55 Identities=20% Similarity=0.156 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHH
Q psy8739 6 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 60 (558)
Q Consensus 6 ~~~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~ 60 (558)
....++.-+.+++..+..+.+....+......|-.++..+...+.--.+.+..+.
T Consensus 14 ~~~Ql~~~~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l~ 68 (531)
T PF15450_consen 14 RWKQLEQWVAELQAEVACLRGHKERCERATLSLLRELLQVRARVQLQDSELMQLR 68 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777666666666666665555444444443333
No 233
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=47.26 E-value=1.1e+02 Score=23.79 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 313 NDAVSEMGEQIDQLNKLKTKAEH 335 (558)
Q Consensus 313 ~~~i~~L~~~le~~~~~k~~le~ 335 (558)
+..|..|+.+|......+..+++
T Consensus 14 eqeV~~Lq~~L~~E~~~r~aLe~ 36 (88)
T PF14389_consen 14 EQEVAELQKQLQEEQDLRRALEK 36 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455444444444444
No 234
>PRK02793 phi X174 lysis protein; Provisional
Probab=47.13 E-value=1.2e+02 Score=22.64 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=35.1
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 445 LLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 445 l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
+...+..|+..+.+....++++......-+..|..+...+..+..++.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777777777777777777777777777777664
No 235
>PRK04406 hypothetical protein; Provisional
Probab=45.83 E-value=1.3e+02 Score=22.68 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=4.3
Q ss_pred HHHHHHHHHhhh
Q psy8739 10 LQHQLNEVQGKL 21 (558)
Q Consensus 10 le~~l~e~~~~~ 21 (558)
++..+.++..++
T Consensus 9 le~Ri~~LE~~l 20 (75)
T PRK04406 9 LEERINDLECQL 20 (75)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 236
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=45.67 E-value=4.9e+02 Score=29.34 Aligned_cols=32 Identities=9% Similarity=0.073 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy8739 511 RVDDLAAELDASQKECRNYSTELFRLKGAYEE 542 (558)
Q Consensus 511 ~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e 542 (558)
.+-..+.++..++++..-.+.-|..+-.+..+
T Consensus 364 ~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e 395 (726)
T PRK09841 364 AMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQE 395 (726)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444433
No 237
>PRK04406 hypothetical protein; Provisional
Probab=45.09 E-value=1.3e+02 Score=22.61 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=34.0
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 445 LLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 445 l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
+...+..|+..+.+....++++......-+..|..+...+..+..++.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777777777777777777777777766664
No 238
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=44.59 E-value=4.1e+02 Score=28.16 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8739 473 LQRQLSKANADAQLWR 488 (558)
Q Consensus 473 l~~~l~~l~~e~~~~k 488 (558)
+...+.+...+|..+|
T Consensus 499 mNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 499 MNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333334444444443
No 239
>KOG1962|consensus
Probab=44.00 E-value=2.7e+02 Score=25.83 Aligned_cols=39 Identities=28% Similarity=0.449 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy8739 510 RRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLE 548 (558)
Q Consensus 510 ~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~ 548 (558)
..++..+...+++.+....+..+|+++..+...+.++++
T Consensus 172 ~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 172 KKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 456666666677777777777777777766666666554
No 240
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=43.98 E-value=1.3e+02 Score=24.44 Aligned_cols=39 Identities=28% Similarity=0.488 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHh
Q psy8739 10 LQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQ 48 (558)
Q Consensus 10 le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~ 48 (558)
++.++..+...+..+...+..+......|.-++..|...
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 241
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=43.37 E-value=2.1e+02 Score=24.37 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8739 457 DNIREQLEEEAEGKADLQR 475 (558)
Q Consensus 457 ~~l~~~lee~~~~~~~l~~ 475 (558)
.++...++.+......+..
T Consensus 97 ~~l~~~~~~l~~~~~~l~~ 115 (140)
T PRK03947 97 EILDKRKEELEKALEKLEE 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 242
>PRK00295 hypothetical protein; Provisional
Probab=42.94 E-value=1.3e+02 Score=22.06 Aligned_cols=17 Identities=12% Similarity=0.134 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhhHHHHH
Q psy8739 10 LQHQLNEVQGKLDETNR 26 (558)
Q Consensus 10 le~~l~e~~~~~ee~~~ 26 (558)
||..++-...-++++..
T Consensus 10 LE~kla~qE~tie~Ln~ 26 (68)
T PRK00295 10 LESRQAFQDDTIQALND 26 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 243
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=42.37 E-value=1.9e+02 Score=23.56 Aligned_cols=46 Identities=33% Similarity=0.501 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 365 AKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEA 410 (558)
Q Consensus 365 ~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~ 410 (558)
+..++.++..+...+..+...+..+...-..|..++..|+..+...
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555555555555555555555444
No 244
>KOG0962|consensus
Probab=42.32 E-value=6.7e+02 Score=30.00 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 421 KISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY 491 (558)
Q Consensus 421 ~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl 491 (558)
...+...+.+++..+.........+...+..+...+..+...+++....++.......+...++..|...+
T Consensus 880 ~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l 950 (1294)
T KOG0962|consen 880 LQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLL 950 (1294)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666666665554333333333334445554444
No 245
>PRK02119 hypothetical protein; Provisional
Probab=42.21 E-value=1.4e+02 Score=22.25 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=33.0
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 445 LLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 445 l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
+...+..|+..+.+....++++......-+..|..+...+..+..++.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667777777777777777777777777777777777766664
No 246
>PRK00736 hypothetical protein; Provisional
Probab=42.02 E-value=1.4e+02 Score=21.98 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhH
Q psy8739 8 KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLS 39 (558)
Q Consensus 8 ~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~ 39 (558)
-.||..+.....-++++...+......+..|.
T Consensus 8 ~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~ 39 (68)
T PRK00736 8 TELEIRVAEQEKTIEELSDQLAEQWKTVEQMR 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344344333333333333333333333333
No 247
>KOG2077|consensus
Probab=41.71 E-value=4.7e+02 Score=27.96 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 437 EEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 437 ~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
.+.-.+++++.+.-.|..+..-|+..++....++-.++..+.++..++...+..+.
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~ 374 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAE 374 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777777777777777777777777777777777777777776666654
No 248
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=41.35 E-value=1.9e+02 Score=23.45 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 123 QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDI 157 (558)
Q Consensus 123 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 157 (558)
..+..+.+..+.....+.+....+...+.++...+
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445555544544444444443
No 249
>PRK09343 prefoldin subunit beta; Provisional
Probab=40.50 E-value=2.1e+02 Score=23.73 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy8739 423 SLTTQLEDTKR 433 (558)
Q Consensus 423 ~l~~~l~el~~ 433 (558)
.+...+.+++.
T Consensus 96 ~l~~~l~e~q~ 106 (121)
T PRK09343 96 KLREKLKELQA 106 (121)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 250
>KOG4302|consensus
Probab=39.93 E-value=5.5e+02 Score=28.31 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q psy8739 321 EQIDQLNKLKTKAEHERNAAHNETNNTRAAA 351 (558)
Q Consensus 321 ~~le~~~~~k~~le~~~~~le~e~~~l~~~l 351 (558)
.-++.....++.+...+...+.++.++...+
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l 84 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSAL 84 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555555555555555554444
No 251
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=39.79 E-value=3.2e+02 Score=25.49 Aligned_cols=79 Identities=24% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhH
Q psy8739 136 RNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQ 214 (558)
Q Consensus 136 ~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~ 214 (558)
+..|+..+..++.++..++..++++...=....-.....+..+.....++-.+.-.++..+..++.++.+++.+.....
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 252
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=39.64 E-value=2e+02 Score=23.10 Aligned_cols=55 Identities=25% Similarity=0.297 Sum_probs=31.7
Q ss_pred HHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 206 LTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELE 260 (558)
Q Consensus 206 l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~ 260 (558)
|+.-+=+++.....+...++.-...|..++.+++...-....+.+....|..++.
T Consensus 17 LKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 17 LKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555666666666667777777777766555555555555555444
No 253
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=39.42 E-value=2.3e+02 Score=23.82 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy8739 124 DTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEI 203 (558)
Q Consensus 124 ~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el 203 (558)
+...+++...+-+..|++++.-|...+..+++.--+. +. .-+. +..+ .++.+..-+..|++.+..++..+
T Consensus 5 EWktRYEtQ~E~N~QLekqi~~l~~kiek~r~n~~dr---l~-siR~----ye~M--s~~~l~~llkqLEkeK~~Le~ql 74 (129)
T PF15372_consen 5 EWKTRYETQLELNDQLEKQIIILREKIEKIRGNPSDR---LS-SIRR----YEQM--SVESLNQLLKQLEKEKRSLENQL 74 (129)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cH-HHHH----Hhhc--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555444443321110 00 1111 1111 33555566677777777788888
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHH
Q psy8739 204 ASLTAKLEDEQGLVGKNQKQIKELQARIEELE 235 (558)
Q Consensus 204 ~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~ 235 (558)
-++-.+++.+......+...++.+-+.|...-
T Consensus 75 k~~e~rLeQEsKAyhk~ndeRr~ylaEi~~~s 106 (129)
T PF15372_consen 75 KDYEWRLEQESKAYHKANDERRQYLAEISQTS 106 (129)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 88888888887777777777777777777665
No 254
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.92 E-value=1.7e+02 Score=23.86 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHH
Q psy8739 8 KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEE 51 (558)
Q Consensus 8 ~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e 51 (558)
..++.++..+...+.++...+..+......|.-++..|...+..
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555444443
No 255
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=38.48 E-value=2e+02 Score=22.80 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8739 137 NQLFQQKKKLEQENGGLKKDI 157 (558)
Q Consensus 137 ~~l~~~~~~l~~~~~~l~~~~ 157 (558)
..+...+..+..++.....-+
T Consensus 15 ~~~~~q~~~l~~~~~~~~~~~ 35 (106)
T PF01920_consen 15 QQLEQQIQQLERQLRELELTL 35 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 256
>PRK02119 hypothetical protein; Provisional
Probab=37.87 E-value=1.7e+02 Score=21.85 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739 220 NQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEE 268 (558)
Q Consensus 220 ~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~ 268 (558)
++..+..|+.++.-.+..++........-.+.+..|...+.-|..++.+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555555566666666555554
No 257
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.36 E-value=3.2e+02 Score=24.60 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 123 QDTVDRLQQEEDARNQLFQQKKKLEQENGGLK 154 (558)
Q Consensus 123 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~ 154 (558)
..+..+|+++......|...+.-|-.++....
T Consensus 63 e~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~ 94 (182)
T PF15035_consen 63 EEALIRLEEEQQRSEELAQVNALLREQLEQAR 94 (182)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444455555544444444444444444443
No 258
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=36.09 E-value=2.4e+02 Score=22.96 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy8739 428 LEDTKRLA 435 (558)
Q Consensus 428 l~el~~~l 435 (558)
+..+....
T Consensus 9 l~~l~~~~ 16 (127)
T smart00502 9 LTKLRKKA 16 (127)
T ss_pred HHHHHHhh
Confidence 33333333
No 259
>KOG2264|consensus
Probab=35.69 E-value=3.5e+02 Score=28.78 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhhHHHhhhH
Q psy8739 365 AKQLQHQLNEVQGKLDETNRSL 386 (558)
Q Consensus 365 ~~~le~~l~el~~~l~e~~~~~ 386 (558)
+..|..+|.++...+++..+.+
T Consensus 102 rqel~seI~~~n~kiEelk~~i 123 (907)
T KOG2264|consen 102 RQELNSEIEEINTKIEELKRLI 123 (907)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 260
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=35.19 E-value=4.2e+02 Score=25.54 Aligned_cols=40 Identities=25% Similarity=0.467 Sum_probs=17.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy8739 172 EGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLE 211 (558)
Q Consensus 172 e~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le 211 (558)
..++..++..+..+.+....|+..+.+...|++..+.++.
T Consensus 175 ~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~ 214 (267)
T PF10234_consen 175 QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQ 214 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333
No 261
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.16 E-value=1.5e+02 Score=20.80 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy8739 516 AAELDASQKECRNYSTELFRLKGAYEEAQEQL 547 (558)
Q Consensus 516 ~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~ 547 (558)
..++..+...+..+..+...++..++.+.+.+
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444443333
No 262
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=34.80 E-value=1.9e+02 Score=21.46 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQL 407 (558)
Q Consensus 364 ~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l 407 (558)
....++.....++..+.......+.+..++..|...+..|..++
T Consensus 22 q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 22 QQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444444444444444444444444333
No 263
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=34.35 E-value=2.6e+02 Score=22.87 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 365 AKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEA 410 (558)
Q Consensus 365 ~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~ 410 (558)
+..++.++..+-..+..+...+..+...-..|..++..|+..+.+.
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555666666666555543
No 264
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.17 E-value=3.3e+02 Score=26.24 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHH
Q psy8739 362 EKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSD 402 (558)
Q Consensus 362 e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~ 402 (558)
..++..++.+|..|++.++.....+..+...-+.+-.+++.
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555554444444444444444434333
No 265
>KOG4809|consensus
Probab=33.81 E-value=6.1e+02 Score=27.01 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy8739 536 LKGAYEEAQEQLEAV 550 (558)
Q Consensus 536 l~~~l~e~~~~~~~l 550 (558)
.+.-+.+-+..+..|
T Consensus 540 tqqslaEke~HL~nL 554 (654)
T KOG4809|consen 540 TQQSLAEKEAHLANL 554 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 266
>PRK10698 phage shock protein PspA; Provisional
Probab=33.63 E-value=4e+02 Score=24.86 Aligned_cols=43 Identities=12% Similarity=0.085 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8739 339 AAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDE 381 (558)
Q Consensus 339 ~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e 381 (558)
.+..-+.++...+..+......+....+.++.++..+.....+
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~ 70 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVE 70 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444455555555544444433
No 267
>KOG2264|consensus
Probab=33.02 E-value=3.9e+02 Score=28.47 Aligned_cols=13 Identities=38% Similarity=0.639 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy8739 453 EHDIDNIREQLEE 465 (558)
Q Consensus 453 e~e~~~l~~~lee 465 (558)
+..++..+.++++
T Consensus 134 k~~ieqaq~~~~E 146 (907)
T KOG2264|consen 134 KGEIEQAQRQLEE 146 (907)
T ss_pred HhHHHHHHHHHHH
Confidence 3333333333333
No 268
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=32.91 E-value=4e+02 Score=24.59 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHH
Q psy8739 286 EMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQ 325 (558)
Q Consensus 286 el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L~~~le~ 325 (558)
.+..|...+..........-..+...|...+..|+.++-.
T Consensus 19 ~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq 58 (206)
T PF14988_consen 19 KIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQ 58 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333334444556666666665543
No 269
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=32.72 E-value=2.6e+02 Score=22.43 Aligned_cols=62 Identities=19% Similarity=0.312 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHh---HHHHHHHhHHHHHHHHHHHHhhHHhHhhh
Q psy8739 8 KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSI---ENSDLLRQLEEAESQVSQLSKIKISLTTQ 69 (558)
Q Consensus 8 ~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~---e~~~l~~~l~e~e~~~~~l~k~~~~l~~q 69 (558)
-.+..+...+...++.+....+.+...++.+.. +...+..........+..+......++.+
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666555 34444444444444444443333333333
No 270
>KOG1655|consensus
Probab=32.65 E-value=3.8e+02 Score=24.28 Aligned_cols=51 Identities=14% Similarity=0.375 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 428 LEDTKRLADEEGRERATLLGKFRNLE-HDIDNIREQLEEEAEGKADLQRQLS 478 (558)
Q Consensus 428 l~el~~~le~~~~~~~~l~~~~~~le-~e~~~l~~~lee~~~~~~~l~~~l~ 478 (558)
+.+.+..+..+......+...++.+. ..++.|+.++.+.-..-.+++..+.
T Consensus 99 LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lg 150 (218)
T KOG1655|consen 99 LKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLG 150 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555666666666664 6677777777777776666665443
No 271
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=32.24 E-value=1.4e+02 Score=26.24 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHHHh
Q psy8739 510 RRVDDLAAELDASQKECRNYST-----ELFRLKGAYEEAQEQLEAVRREN 554 (558)
Q Consensus 510 ~~~~~l~~~~~~~~~~~~~~e~-----e~~~l~~~l~e~~~~~~~l~~~~ 554 (558)
.....++.++..+.++++..+. .+.+++++++.+...++.+....
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554 55556666666666666655543
No 272
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=31.74 E-value=3.9e+02 Score=24.18 Aligned_cols=89 Identities=12% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy8739 377 GKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDI 456 (558)
Q Consensus 377 ~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~ 456 (558)
..+.+.+..+..|..++.-++..|..-......+...+.-...........-...+.+...+...+..+..+++.+...+
T Consensus 98 ~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv 177 (192)
T PF11180_consen 98 ARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQV 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q psy8739 457 DNIREQLEE 465 (558)
Q Consensus 457 ~~l~~~lee 465 (558)
..|+.+.++
T Consensus 178 ~~Lq~q~~~ 186 (192)
T PF11180_consen 178 RQLQRQANE 186 (192)
T ss_pred HHHHHHhcC
No 273
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=31.51 E-value=1.9e+02 Score=20.35 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy8739 515 LAAELDASQKECRNYSTELFRLKGAYEEAQEQLEA 549 (558)
Q Consensus 515 l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~ 549 (558)
+...++.+.+++..+...+..+...+..+-.=++.
T Consensus 12 ~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~ 46 (55)
T PF05377_consen 12 IESSINTVKKENEEISESVEKIEENVKDLLSLYEV 46 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455554444444444433
No 274
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=31.50 E-value=5.9e+02 Score=26.16 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHH
Q psy8739 149 ENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELE 193 (558)
Q Consensus 149 ~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le 193 (558)
++.+++.....+...++..+..+..++.-....+.+..-....|+
T Consensus 220 el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLE 264 (395)
T PF10267_consen 220 ELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLE 264 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333333333333334444555555555555555555444444444
No 275
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=31.43 E-value=56 Score=23.04 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8739 529 YSTELFRLKGAYEEAQEQLEAVRRENKNL 557 (558)
Q Consensus 529 ~e~e~~~l~~~l~e~~~~~~~l~~~~~~l 557 (558)
...++..|+.++.++..+...|+.+|..|
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888887654
No 276
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.25 E-value=4.9e+02 Score=25.11 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q psy8739 394 KKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADL 473 (558)
Q Consensus 394 ~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l 473 (558)
..+..++...+..+..+...-..+...+..-..++.-.+.+|..+...+..+-.++..++.++..+=..|-+--+...=|
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yL 251 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYL 251 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444444444444444444444555555555666666666777777777777777777777766555555444444444
Q ss_pred HHHHHH
Q psy8739 474 QRQLSK 479 (558)
Q Consensus 474 ~~~l~~ 479 (558)
+.++..
T Consensus 252 e~qle~ 257 (267)
T PF10234_consen 252 EHQLEE 257 (267)
T ss_pred HHHHHH
Confidence 444433
No 277
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=31.02 E-value=2.5e+02 Score=21.78 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=12.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 524 KECRNYSTELFRLKGAYEEAQEQLEAVRRE 553 (558)
Q Consensus 524 ~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~ 553 (558)
..+..+..++..+...++.+...++.-+.+
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444333
No 278
>KOG4348|consensus
Probab=30.91 E-value=2.5e+02 Score=28.72 Aligned_cols=50 Identities=16% Similarity=0.365 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy8739 286 EMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNA 339 (558)
Q Consensus 286 el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L~~~le~~~~~k~~le~~~~~ 339 (558)
-+..|+.++-+.. --++.++..|..+|..|...|++...++..|+-++..
T Consensus 570 s~delr~qi~el~----~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~ 619 (627)
T KOG4348|consen 570 SLDELRAQIIELL----CIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEK 619 (627)
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHH
Confidence 3455565554443 2355777888888888888888777776555444333
No 279
>KOG0999|consensus
Probab=30.65 E-value=6.9e+02 Score=26.66 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhHhHHhhhhHHHHHHHhhh
Q psy8739 480 ANADAQLWRTKYESEGVARAEELEESKSEE 509 (558)
Q Consensus 480 l~~e~~~~k~kle~~~~~~~~~~ee~k~~~ 509 (558)
...-+..++.+|+.+-....+.+.-+++.+
T Consensus 635 aevaltnlksKYEnEK~mvtetm~KlRnEL 664 (772)
T KOG0999|consen 635 AEVALTNLKSKYENEKAMVTETMDKLRNEL 664 (772)
T ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHHHHH
Confidence 344556778888766555555555555444
No 280
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=30.01 E-value=2.8e+02 Score=22.02 Aligned_cols=38 Identities=8% Similarity=0.264 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy8739 510 RRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQL 547 (558)
Q Consensus 510 ~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~ 547 (558)
..+..+-..++.++..+..++.=+..|-.-...++.++
T Consensus 59 ~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 59 EELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555566666666665555555555555444
No 281
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=29.99 E-value=1.8e+02 Score=24.56 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=30.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHH
Q psy8739 171 IEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQ 221 (558)
Q Consensus 171 le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~ 221 (558)
+...+.+.+.-+.........|+..+.....++..++.++++.......++
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555556666666666666666777777776666555444443
No 282
>KOG4687|consensus
Probab=29.69 E-value=5e+02 Score=24.78 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=20.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy8739 507 SEERRVDDLAAELDASQKECRNYSTELFRL 536 (558)
Q Consensus 507 ~~~~~~~~l~~~~~~~~~~~~~~e~e~~~l 536 (558)
..+..-.++-.++|+.+..+..+..+++-+
T Consensus 178 amideKEELimERDa~kcKa~RLnhELfva 207 (389)
T KOG4687|consen 178 AMIDEKEELIMERDAMKCKAARLNHELFVA 207 (389)
T ss_pred HHhchHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 333556677777788887777777766653
No 283
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.49 E-value=8.5e+02 Score=27.38 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 459 IREQLEEEAEGKADLQRQLSKAN 481 (558)
Q Consensus 459 l~~~lee~~~~~~~l~~~l~~l~ 481 (558)
++.-|.+.-..+..+-..++.++
T Consensus 690 I~~iL~~~~~~I~~~v~~ik~i~ 712 (717)
T PF10168_consen 690 IKEILKQQGEEIDELVKQIKNIK 712 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 284
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=29.35 E-value=8.5e+02 Score=27.30 Aligned_cols=54 Identities=22% Similarity=0.264 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhHH
Q psy8739 477 LSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTEL 533 (558)
Q Consensus 477 l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~~~e~e~ 533 (558)
+..-+.++..-+..++.+...+.-+++++- ..+..++-.+++++.++.-|.--+
T Consensus 478 ~~ekd~~l~~~kq~~d~e~~rik~ev~eal---~~~k~~q~kLe~sekEN~iL~itl 531 (861)
T PF15254_consen 478 FQEKDQELLENKQQFDIETTRIKIEVEEAL---VNVKSLQFKLEASEKENQILGITL 531 (861)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHhhhhHhhhHH
Confidence 333455555566666554433333444443 566666777777776666555433
No 285
>PF14992 TMCO5: TMCO5 family
Probab=29.21 E-value=5.4e+02 Score=24.95 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=24.5
Q ss_pred HHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhH
Q psy8739 33 AAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQL 70 (558)
Q Consensus 33 ~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql 70 (558)
....+|...+..+-..+...+..+..+.++.......+
T Consensus 11 ~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~ 48 (280)
T PF14992_consen 11 KDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIA 48 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 33445555667777777777777777777666555554
No 286
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.04 E-value=4.4e+02 Score=25.36 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 388 DFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLED 430 (558)
Q Consensus 388 ~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~e 430 (558)
++..++..+..++..|+-++++....+..+....+.+-..|..
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444544444444444444444444443
No 287
>PRK04325 hypothetical protein; Provisional
Probab=28.96 E-value=2.5e+02 Score=21.03 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739 222 KQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEE 268 (558)
Q Consensus 222 ~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~ 268 (558)
..+..|+.++.-.+..++........-.+.+..|...+.-|..++.+
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444445555555555555555544
No 288
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=28.81 E-value=3.8e+02 Score=23.07 Aligned_cols=58 Identities=12% Similarity=0.236 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy8739 396 LSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLE 453 (558)
Q Consensus 396 le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le 453 (558)
+..++..+...++.....+..+.......+.++.+....+++..+.+..+...+..|-
T Consensus 82 ~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv 139 (159)
T PF04949_consen 82 MRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELV 139 (159)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555566666666666665555555555554443
No 289
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=28.30 E-value=4.5e+02 Score=23.82 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHH
Q psy8739 365 AKQLQHQLNEVQGKLDETNRSLNDF 389 (558)
Q Consensus 365 ~~~le~~l~el~~~l~e~~~~~~~l 389 (558)
+..|+.++.+...-+.+....+...
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~a 93 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQA 93 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444544444444444433333
No 290
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.21 E-value=2.9e+02 Score=28.96 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 223 QIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERL 266 (558)
Q Consensus 223 ~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l 266 (558)
+..+|+.+|..+..+++.........+..++.++.++..|+.++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333344444445555555555554
No 291
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=28.14 E-value=6.3e+02 Score=25.44 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8739 422 ISLTTQLEDTKRLADEE 438 (558)
Q Consensus 422 ~~l~~~l~el~~~le~~ 438 (558)
..+..++..++.++..+
T Consensus 245 ~~l~~~i~~l~~~i~~e 261 (362)
T TIGR01010 245 PSLQARIKSLRKQIDEQ 261 (362)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 292
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=27.94 E-value=4.1e+02 Score=23.20 Aligned_cols=65 Identities=18% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH----hhh
Q psy8739 455 DIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECR----NYS 530 (558)
Q Consensus 455 e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~----~~e 530 (558)
++...+..+......+..+..++...+..|..++.... ....|+..++.++..+. .++
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~------------------d~eeLk~~i~~lq~~~~~~~~~~e 75 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAK------------------DNEELKKQIEELQAKNKTAKEEYE 75 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------------------CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHH
Q psy8739 531 TELFRLK 537 (558)
Q Consensus 531 ~e~~~l~ 537 (558)
.++..+.
T Consensus 76 ~~l~~~~ 82 (155)
T PF06810_consen 76 AKLAQMK 82 (155)
T ss_pred HHHHHHH
No 293
>PRK00846 hypothetical protein; Provisional
Probab=27.87 E-value=2.7e+02 Score=21.10 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=33.8
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 444 TLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 444 ~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
.+...+..|+..+.+....++++..........+..+...+..+..++.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777777777777777777777777777776665
No 294
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.46 E-value=3.1e+02 Score=21.64 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 123 QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKD 156 (558)
Q Consensus 123 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~ 156 (558)
..+.............|......+...+.+++..
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444434444444444444444444444433
No 295
>KOG1850|consensus
Probab=26.96 E-value=6.2e+02 Score=24.91 Aligned_cols=42 Identities=26% Similarity=0.540 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739 227 LQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEE 268 (558)
Q Consensus 227 lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~ 268 (558)
++.-+.+.+..+...+.....+...+..|...+..|.+++..
T Consensus 114 fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~ 155 (391)
T KOG1850|consen 114 FQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEE 155 (391)
T ss_pred HHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555444444455555566666666666666654
No 296
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=26.66 E-value=9.6e+02 Score=27.03 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8739 511 RVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVR 551 (558)
Q Consensus 511 ~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~ 551 (558)
.+..-...+...+.+...++.++...+.-|..+-.+..++.
T Consensus 357 ~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 357 RLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666666666677666666666666666553
No 297
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=25.94 E-value=4e+02 Score=22.44 Aligned_cols=51 Identities=25% Similarity=0.250 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Q psy8739 408 EEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDN 458 (558)
Q Consensus 408 ~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~ 458 (558)
+.+...+..+++.+..+++++.++.-.|+.+.++-..+...-+..-.++..
T Consensus 54 ~~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsKAyhk~ndeRr~ylaEi~~ 104 (129)
T PF15372_consen 54 ESLNQLLKQLEKEKRSLENQLKDYEWRLEQESKAYHKANDERRQYLAEISQ 104 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 445556667778888888888888888888877666555554444444443
No 298
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=25.82 E-value=5.8e+02 Score=24.18 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 341 HNETNNTRAAADQLAREKAATEKIAKQLQHQLNE 374 (558)
Q Consensus 341 e~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~e 374 (558)
..++......++.+...+..+...+..++..+..
T Consensus 76 q~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~ 109 (239)
T PF05276_consen 76 QQEAQKAALQYERANSMHAAAKEMVALAEQSLMS 109 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444555555555555555555554443
No 299
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=25.57 E-value=2.7e+02 Score=20.32 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHh
Q psy8739 10 LQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQ 48 (558)
Q Consensus 10 le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~ 48 (558)
++..+..+-...+.+......+......+.++...|...
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 300
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=24.92 E-value=2.7e+02 Score=20.13 Aligned_cols=26 Identities=31% Similarity=0.518 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy8739 187 RNKKELEQTIQRKDKEIASLTAKLED 212 (558)
Q Consensus 187 ~~~~~le~~~~~l~~el~~l~~~le~ 212 (558)
....++.+.+.+++.++..+...+..
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455555555555555555555543
No 301
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=24.85 E-value=2.9e+02 Score=23.41 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8739 424 LTTQLEDTKRLADEEGRER 442 (558)
Q Consensus 424 l~~~l~el~~~le~~~~~~ 442 (558)
-..+|..|+..+++....+
T Consensus 106 Kdsei~~Lr~~L~~~~~~n 124 (131)
T PF04859_consen 106 KDSEIDRLREKLDELNRAN 124 (131)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444433333
No 302
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=24.57 E-value=2.8e+02 Score=28.23 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=14.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 339 AAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEV 375 (558)
Q Consensus 339 ~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el 375 (558)
.++..+.++...+..+........+.+..+...+.++
T Consensus 148 e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 148 ELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333333333344444433333
No 303
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=24.34 E-value=8.9e+02 Score=25.85 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy8739 394 KKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLE 453 (558)
Q Consensus 394 ~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le 453 (558)
.+++.++.++...+++....+..-......++..+.++...+.........+...+..++
T Consensus 350 r~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lr 409 (570)
T COG4477 350 RKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLR 409 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555555555554444444333334444444444444444444444444444444443
No 304
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=23.52 E-value=1.3e+02 Score=16.91 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8739 532 ELFRLKGAYEEAQEQLEA 549 (558)
Q Consensus 532 e~~~l~~~l~e~~~~~~~ 549 (558)
++..+++++.+|+.++..
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455666666666666654
No 305
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=23.27 E-value=1.1e+03 Score=26.50 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Q psy8739 425 TTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIR 460 (558)
Q Consensus 425 ~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~ 460 (558)
-..+..++..|+.....+..|.-.++.-..++..|+
T Consensus 507 l~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~ 542 (861)
T PF15254_consen 507 LVNVKSLQFKLEASEKENQILGITLRQRDAEIERLR 542 (861)
T ss_pred HHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHH
Confidence 334444555555555555555555555555554443
No 306
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=23.23 E-value=6.6e+02 Score=23.95 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 220 NQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLE 267 (558)
Q Consensus 220 ~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~ 267 (558)
+...+-.+..++.+|+.++.........+..+...|..+-..|=+.+.
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777777766666666666666666666666655443
No 307
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=23.22 E-value=4.7e+02 Score=22.21 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 219 KNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERL 266 (558)
Q Consensus 219 ~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l 266 (558)
.++-++.+++++|..|+.+..........+.+.++-|+..+......+
T Consensus 22 ~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 22 QWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKY 69 (134)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455556666665555555555555555555555554444443
No 308
>KOG1937|consensus
Probab=23.18 E-value=8.6e+02 Score=25.27 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhHHhHhhhHHHHHhhhhh
Q psy8739 50 EEAESQVSQLSKIKISLTTQLEDTKRLADE 79 (558)
Q Consensus 50 ~e~e~~~~~l~k~~~~l~~ql~el~~~~e~ 79 (558)
.+.++-+.++.........++.++...|+.
T Consensus 289 ~dgeayLaKL~~~l~~~~~~~~~ltqqwed 318 (521)
T KOG1937|consen 289 DDGEAYLAKLMGKLAELNKQMEELTQQWED 318 (521)
T ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555
No 309
>PRK11519 tyrosine kinase; Provisional
Probab=22.63 E-value=1.1e+03 Score=26.44 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy8739 515 LAAELDASQKECRNYSTELFRLKGAYEE 542 (558)
Q Consensus 515 l~~~~~~~~~~~~~~e~e~~~l~~~l~e 542 (558)
...++..++++......-|..+-.++.+
T Consensus 368 ~e~~~~~L~Re~~~~~~lY~~lL~r~~e 395 (719)
T PRK11519 368 TQQEIVRLTRDVESGQQVYMQLLNKQQE 395 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444333334444333333
No 310
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=22.36 E-value=9.7e+02 Score=25.61 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8739 387 NDFDAAKKKLSIENSDLLRQL 407 (558)
Q Consensus 387 ~~l~~~~~~le~e~~~l~~~l 407 (558)
..+...+..++.++..+..++
T Consensus 284 ~~~~ee~~~l~~Qi~~l~~e~ 304 (511)
T PF09787_consen 284 DHLQEEIQLLERQIEQLRAEL 304 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444433333333
No 311
>PF14992 TMCO5: TMCO5 family
Probab=22.23 E-value=7.3e+02 Score=24.08 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHH
Q psy8739 435 ADEEGRERATLLGKFRNLEHDIDNI 459 (558)
Q Consensus 435 le~~~~~~~~l~~~~~~le~e~~~l 459 (558)
+.............+..+..++.+.
T Consensus 118 lqql~~~~~~qE~ei~kve~d~~~v 142 (280)
T PF14992_consen 118 LQQLLESCASQEKEIAKVEDDYQQV 142 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444433
No 312
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.09 E-value=3.1e+02 Score=28.70 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=30.3
Q ss_pred hhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhH
Q psy8739 20 KLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQL 70 (558)
Q Consensus 20 ~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql 70 (558)
.+.+.+....++..++..|..++..+..+..+.+..+..++.+...|..++
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555556666666666666666666666666666665
No 313
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=22.07 E-value=1.1e+03 Score=26.12 Aligned_cols=461 Identities=14% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhhhhhhhhhhhhhchhh
Q psy8739 15 NEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESSGWVEELTKGSIE 94 (558)
Q Consensus 15 ~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~e~~~~~~~~~~~~~~ 94 (558)
.++..-.......+..+......|+..+..+..........+....++...|..+|...+..++...-.-.
T Consensus 151 eql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~--------- 221 (739)
T PF07111_consen 151 EQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVE--------- 221 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---------
Q ss_pred hhhhhhchhhhhccchhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q psy8739 95 AITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLE------------- 161 (558)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~------------- 161 (558)
++..++-..-........|+.+...|.+.+.-.++....|.....-|+--+.-+..-+---.
T Consensus 222 -----~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~L 296 (739)
T PF07111_consen 222 -----QLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPL 296 (739)
T ss_pred -----HHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q ss_pred ---------hhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHH
Q psy8739 162 ---------GDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIE 232 (558)
Q Consensus 162 ---------~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~ 232 (558)
.-|..|+.+.=.=+-.+..+-.+....+..+...+.-|+.++.....+-.-....+..-.-.+.-=.....
T Consensus 297 e~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sk 376 (739)
T PF07111_consen 297 EPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSK 376 (739)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy8739 233 ELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKH 312 (558)
Q Consensus 233 ~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~~~e~~~~~e~el~~lk~~le~~~~~~~~~~~~lr~~~ 312 (558)
.|..+|.........+.......+..+.-+...+......-...+.....--..+..|-..+--+.......-.-+-.+.
T Consensus 377 tLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~ 456 (739)
T PF07111_consen 377 TLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKL 456 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHH
Q ss_pred HH-------------HHHHHHHHHHHHHHHHHHHHHhHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 313 ND-------------AVSEMGEQIDQLNKLKTKAEHERNAAHNET-NNTRAAADQLAREKAATEKIAKQLQHQLNEVQGK 378 (558)
Q Consensus 313 ~~-------------~i~~L~~~le~~~~~k~~le~~~~~le~e~-~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~ 378 (558)
.- ...+|..++..+...+..+..++.--..-| ..+..--+........+......|+..+...+..
T Consensus 457 Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~ 536 (739)
T PF07111_consen 457 ALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQES 536 (739)
T ss_pred HHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhchH
Q psy8739 379 LDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVS-QLSKIKISLTTQ----LEDTKRLADEEGRERATLLGKFRNLE 453 (558)
Q Consensus 379 l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~-~~~~~~~~l~~~----l~el~~~le~~~~~~~~l~~~~~~le 453 (558)
+.........+.............+...+......+. .+......++.. +.++...+++..+....+.-.++.++
T Consensus 537 la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ~q 616 (739)
T PF07111_consen 537 LAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQIQ 616 (739)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy8739 454 HDIDNIREQLEEEAEGKADLQ-RQLSKANADAQLWRT 489 (558)
Q Consensus 454 ~e~~~l~~~lee~~~~~~~l~-~~l~~l~~e~~~~k~ 489 (558)
.....=+....+......... ....++...+..+-+
T Consensus 617 rqa~reKer~~E~~~lq~e~~~~e~~rl~~rlqeler 653 (739)
T PF07111_consen 617 RQAAREKERNQELRRLQEEARKEEGQRLTQRLQELER 653 (739)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 314
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=21.30 E-value=4e+02 Score=20.76 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 218 GKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERL 266 (558)
Q Consensus 218 ~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l 266 (558)
..++..+..+......|..+|+........++..++.+...+......+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556666666666665555555555555555555444433
No 315
>KOG0982|consensus
Probab=20.49 E-value=9.5e+02 Score=24.77 Aligned_cols=51 Identities=16% Similarity=0.341 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8739 220 NQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAG 270 (558)
Q Consensus 220 ~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~ 270 (558)
+..++.-|+.++.+|...-.........+..++-.|...+-.|.+++.+..
T Consensus 220 i~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqE 270 (502)
T KOG0982|consen 220 IERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQE 270 (502)
T ss_pred HHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444433222233334444555555555555555555433
No 316
>KOG4797|consensus
Probab=20.32 E-value=1.8e+02 Score=23.30 Aligned_cols=32 Identities=31% Similarity=0.250 Sum_probs=21.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8739 526 CRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 557 (558)
Q Consensus 526 ~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~~l 557 (558)
+-....++..++.++.++.++...|+++|.-|
T Consensus 62 mfAVREEVe~Lk~qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 62 MFAVREEVEVLKEQIRELEERNSALERENSLL 93 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777777777777777777776544
Done!