Query psy8739
Match_columns 558
No_of_seqs 332 out of 2186
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 17:57:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 98.8 9.1E-09 3.1E-13 118.5 11.6 136 333-468 1030-1165(1184)
2 1i84_S Smooth muscle myosin he 98.8 1.5E-08 5.1E-13 116.8 11.7 176 317-492 986-1161(1184)
3 3o0z_A RHO-associated protein 98.3 0.00056 1.9E-08 58.0 22.7 118 175-302 43-160 (168)
4 2v71_A Nuclear distribution pr 97.7 0.019 6.4E-07 50.1 22.2 79 360-438 60-142 (189)
5 3o0z_A RHO-associated protein 97.3 0.064 2.2E-06 45.5 23.4 81 331-418 37-117 (168)
6 3na7_A HP0958; flagellar bioge 97.3 0.11 3.9E-06 48.5 23.9 7 396-402 65-71 (256)
7 3s4r_A Vimentin; alpha-helix, 97.2 0.0096 3.3E-07 45.9 13.0 83 121-209 10-92 (93)
8 3na7_A HP0958; flagellar bioge 97.1 0.16 5.4E-06 47.5 22.7 33 340-372 37-69 (256)
9 2efr_A General control protein 97.0 0.13 4.3E-06 43.4 24.4 97 396-492 26-122 (155)
10 2fxo_A Myosin heavy chain, car 97.0 0.11 3.8E-06 42.8 19.0 58 410-467 67-124 (129)
11 2fxo_A Myosin heavy chain, car 97.0 0.066 2.2E-06 44.2 16.8 43 118-160 81-123 (129)
12 3tnu_B Keratin, type II cytosk 96.9 0.026 9E-07 46.6 13.6 96 395-493 33-128 (129)
13 3tnu_A Keratin, type I cytoske 96.8 0.024 8.1E-07 47.0 13.0 98 393-493 33-130 (131)
14 3ol1_A Vimentin; structural ge 96.7 0.1 3.4E-06 42.3 15.3 45 422-466 65-109 (119)
15 2efr_A General control protein 96.3 0.41 1.4E-05 40.3 24.9 75 364-438 43-117 (155)
16 3ol1_A Vimentin; structural ge 96.2 0.3 1E-05 39.5 15.3 93 396-495 18-110 (119)
17 3vkg_A Dynein heavy chain, cyt 96.1 3.7 0.00013 51.6 30.9 96 450-552 2010-2105(3245)
18 3bas_A Myosin heavy chain, str 95.9 0.12 4.2E-06 39.3 11.2 79 1-79 10-88 (89)
19 3swk_A Vimentin; cytoskeleton, 95.8 0.14 4.7E-06 38.7 11.0 66 395-460 18-83 (86)
20 2eqb_B RAB guanine nucleotide 95.8 0.4 1.4E-05 36.5 13.0 76 361-436 17-93 (97)
21 2dfs_A Myosin-5A; myosin-V, in 95.6 0.36 1.2E-05 54.6 18.3 23 244-266 1024-1046(1080)
22 2eqb_B RAB guanine nucleotide 95.3 0.71 2.4E-05 35.2 14.4 42 227-268 24-65 (97)
23 3vkg_A Dynein heavy chain, cyt 95.2 8.5 0.00029 48.5 29.3 36 456-491 2058-2093(3245)
24 3swk_A Vimentin; cytoskeleton, 95.1 0.41 1.4E-05 36.1 11.4 81 316-403 2-82 (86)
25 2ocy_A RAB guanine nucleotide 93.7 2.7 9.1E-05 35.2 20.7 94 448-554 52-145 (154)
26 3bas_A Myosin heavy chain, str 93.5 1.5 5.2E-05 33.2 11.6 72 365-436 16-87 (89)
27 1wt6_A Myotonin-protein kinase 93.4 1.2 4E-05 32.4 9.9 62 427-488 11-72 (81)
28 3u1c_A Tropomyosin alpha-1 cha 92.6 2.9 9.8E-05 32.5 15.7 40 395-434 55-94 (101)
29 3tnu_B Keratin, type II cytosk 92.6 3.6 0.00012 33.6 13.6 86 122-207 38-123 (129)
30 2b9c_A Striated-muscle alpha t 92.4 4.3 0.00015 33.9 13.8 70 364-433 53-122 (147)
31 3tnu_A Keratin, type I cytoske 92.2 3.8 0.00013 33.6 13.2 86 122-207 40-125 (131)
32 1gk4_A Vimentin; intermediate 91.9 3 0.0001 31.1 11.9 72 420-494 9-80 (84)
33 3s4r_A Vimentin; alpha-helix, 91.7 3.5 0.00012 31.4 13.1 83 174-265 10-92 (93)
34 2e7s_A RAB guanine nucleotide 91.5 1 3.5E-05 36.7 8.5 72 366-437 42-114 (135)
35 2ocy_A RAB guanine nucleotide 91.3 5.7 0.0002 33.2 20.9 77 396-472 56-133 (154)
36 3u1c_A Tropomyosin alpha-1 cha 91.0 4.5 0.00015 31.4 14.9 48 444-491 48-95 (101)
37 1x8y_A Lamin A/C; structural p 91.0 2.5 8.6E-05 31.7 9.9 51 444-494 32-82 (86)
38 3u59_A Tropomyosin beta chain; 90.9 4.6 0.00016 31.4 15.6 40 395-434 55-94 (101)
39 2b9c_A Striated-muscle alpha t 90.5 3 0.0001 34.8 10.9 18 346-363 21-38 (147)
40 2v66_B Nuclear distribution pr 90.3 5.5 0.00019 31.3 15.3 59 386-444 37-95 (111)
41 2e7s_A RAB guanine nucleotide 89.8 1.1 3.9E-05 36.4 7.4 50 446-495 38-87 (135)
42 2v66_B Nuclear distribution pr 89.8 6.1 0.00021 31.0 16.5 26 136-161 5-30 (111)
43 3i00_A HIP-I, huntingtin-inter 88.9 3.2 0.00011 33.3 9.4 65 197-264 18-82 (120)
44 2v4h_A NF-kappa-B essential mo 88.5 7.3 0.00025 30.2 13.2 45 223-267 63-107 (110)
45 3u59_A Tropomyosin beta chain; 88.0 7.9 0.00027 30.0 14.9 43 449-491 53-95 (101)
46 3mov_A Lamin-B1; LMNB1, B-type 88.0 3.1 0.0001 31.9 8.4 76 415-493 15-90 (95)
47 3oja_B Anopheles plasmodium-re 87.8 6.5 0.00022 41.4 14.1 45 448-492 538-582 (597)
48 3ghg_A Fibrinogen alpha chain; 86.4 12 0.00041 37.5 13.6 14 454-467 176-189 (562)
49 4gkw_A Spindle assembly abnorm 84.8 13 0.00045 29.5 22.4 39 375-413 44-82 (167)
50 3hnw_A Uncharacterized protein 84.1 16 0.00054 30.1 11.5 16 197-212 85-100 (138)
51 2jee_A YIIU; FTSZ, septum, coi 82.3 12 0.00043 27.3 10.1 46 224-269 29-74 (81)
52 1gk4_A Vimentin; intermediate 82.1 13 0.00046 27.5 11.9 74 139-212 6-79 (84)
53 4gkw_A Spindle assembly abnorm 81.8 18 0.00061 28.7 21.3 44 424-467 37-80 (167)
54 2oqq_A Transcription factor HY 80.7 3.1 0.00011 25.9 4.3 32 526-557 5-36 (42)
55 3mov_A Lamin-B1; LMNB1, B-type 80.5 7.8 0.00027 29.6 7.7 23 189-211 67-89 (95)
56 1x8y_A Lamin A/C; structural p 79.1 18 0.0006 27.0 9.7 26 187-212 56-81 (86)
57 1gk7_A Vimentin; intermediate 78.4 3.3 0.00011 25.8 4.1 32 121-152 7-38 (39)
58 2v4h_A NF-kappa-B essential mo 78.3 22 0.00074 27.6 13.4 31 456-486 26-56 (110)
59 1x79_B RAB GTPase binding effe 77.7 23 0.0008 27.7 13.3 30 432-461 76-105 (112)
60 2jee_A YIIU; FTSZ, septum, coi 77.0 19 0.00066 26.3 10.5 41 452-492 32-72 (81)
61 3i00_A HIP-I, huntingtin-inter 75.3 29 0.001 27.6 10.8 24 362-385 39-62 (120)
62 2xv5_A Lamin-A/C; structural p 75.2 21 0.00071 25.8 8.2 52 443-494 8-59 (74)
63 3oja_A Leucine-rich immune mol 74.0 79 0.0027 32.0 15.9 42 432-473 441-482 (487)
64 1ic2_A Tropomyosin alpha chain 73.5 24 0.00083 25.9 10.8 60 3-62 4-63 (81)
65 3qh9_A Liprin-beta-2; coiled-c 72.7 25 0.00084 25.6 9.4 46 423-468 23-68 (81)
66 3ghg_A Fibrinogen alpha chain; 71.6 88 0.003 31.5 14.3 17 339-355 61-77 (562)
67 1d7m_A Cortexillin I; coiled-c 68.5 32 0.0011 25.3 15.8 49 422-470 49-97 (101)
68 3jsv_C NF-kappa-B essential mo 67.3 37 0.0013 25.5 10.5 30 459-488 7-36 (94)
69 2zqm_A Prefoldin beta subunit 67.2 44 0.0015 26.2 13.1 39 122-160 8-46 (117)
70 3trt_A Vimentin; cytoskeleton, 67.0 33 0.0011 24.8 10.0 42 510-551 35-76 (77)
71 3oja_A Leucine-rich immune mol 66.6 1.1E+02 0.0039 30.8 15.7 13 476-488 457-469 (487)
72 1deq_A Fibrinogen (alpha chain 66.5 95 0.0033 29.9 15.0 23 451-473 117-139 (390)
73 1gk6_A Vimentin; intermediate 66.2 29 0.00098 23.7 7.3 47 448-494 8-54 (59)
74 3jsv_C NF-kappa-B essential mo 64.6 43 0.0015 25.2 10.8 45 223-267 41-85 (94)
75 3cvf_A Homer-3, homer protein 63.0 41 0.0014 24.5 8.8 9 371-379 28-36 (79)
76 3cvf_A Homer-3, homer protein 61.7 44 0.0015 24.4 9.0 35 122-156 8-42 (79)
77 1fxk_A Prefoldin; archaeal pro 60.9 54 0.0019 25.2 12.1 34 125-158 6-39 (107)
78 1wt6_A Myotonin-protein kinase 59.5 48 0.0016 24.1 10.3 12 319-330 15-26 (81)
79 3iv1_A Tumor susceptibility ge 58.9 49 0.0017 24.0 10.7 37 308-344 12-48 (78)
80 3cl3_D NF-kappa-B essential mo 58.2 33 0.0011 27.3 6.8 14 225-238 86-99 (130)
81 1deb_A APC protein, adenomatou 56.2 38 0.0013 21.9 5.8 42 9-50 7-48 (54)
82 3cl3_D NF-kappa-B essential mo 53.5 50 0.0017 26.3 7.1 32 350-381 17-48 (130)
83 1deq_A Fibrinogen (alpha chain 53.0 1.6E+02 0.0056 28.3 16.8 18 312-329 65-82 (390)
84 2w83_C C-JUN-amino-terminal ki 51.1 65 0.0022 23.1 9.3 41 440-480 30-70 (77)
85 3s84_A Apolipoprotein A-IV; fo 49.8 1.6E+02 0.0055 27.2 28.9 15 252-266 17-31 (273)
86 3efg_A Protein SLYX homolog; x 49.8 72 0.0025 23.2 7.2 48 445-492 12-59 (78)
87 3mq7_A Bone marrow stromal ant 49.2 93 0.0032 24.3 14.0 18 223-240 72-89 (121)
88 3trt_A Vimentin; cytoskeleton, 46.9 77 0.0026 22.7 10.8 15 287-301 11-25 (77)
89 4h22_A Leucine-rich repeat fli 45.7 99 0.0034 23.7 10.7 15 399-413 31-45 (103)
90 2zqm_A Prefoldin beta subunit 43.7 1.1E+02 0.0039 23.7 11.8 41 510-550 70-110 (117)
91 1d7m_A Cortexillin I; coiled-c 42.0 1E+02 0.0035 22.7 16.1 36 315-350 5-40 (101)
92 2xdj_A Uncharacterized protein 42.0 1E+02 0.0035 22.7 10.0 15 367-381 31-45 (83)
93 3nmd_A CGMP dependent protein 40.2 98 0.0034 22.0 7.2 38 515-552 24-61 (72)
94 2w6b_A RHO guanine nucleotide 39.6 81 0.0028 20.9 5.8 36 445-480 15-50 (56)
95 1gd2_E Transcription factor PA 39.0 50 0.0017 23.5 4.7 10 61-70 50-59 (70)
96 3m91_A Proteasome-associated A 38.9 82 0.0028 20.8 6.6 34 430-463 13-46 (51)
97 3qh9_A Liprin-beta-2; coiled-c 36.8 1.2E+02 0.0041 22.0 9.2 39 13-51 27-65 (81)
98 3sja_C Golgi to ER traffic pro 36.6 1.1E+02 0.0036 21.4 6.1 45 511-555 7-56 (65)
99 3s84_A Apolipoprotein A-IV; fo 36.2 2.6E+02 0.0089 25.7 29.3 15 167-181 16-30 (273)
100 2ke4_A CDC42-interacting prote 35.9 1.4E+02 0.0049 22.7 8.5 32 141-172 15-49 (98)
101 2i1j_A Moesin; FERM, coiled-co 33.7 1.1E+02 0.0039 31.7 8.5 21 332-352 332-352 (575)
102 1fxk_A Prefoldin; archaeal pro 33.4 1.6E+02 0.0054 22.4 12.0 38 511-548 66-103 (107)
103 4h22_A Leucine-rich repeat fli 32.9 1.6E+02 0.0056 22.5 10.6 21 248-268 63-83 (103)
104 1ci6_A Transcription factor AT 31.1 1.3E+02 0.0044 20.7 8.0 29 431-459 28-56 (63)
105 3mq9_A Bone marrow stromal ant 30.2 4.2E+02 0.014 26.3 15.3 38 455-492 398-435 (471)
106 2ke4_A CDC42-interacting prote 29.7 1.8E+02 0.0063 22.0 8.6 24 340-363 20-43 (98)
107 2yy0_A C-MYC-binding protein; 29.5 1.2E+02 0.0039 20.2 5.0 24 522-545 24-47 (53)
108 3iv1_A Tumor susceptibility ge 28.6 1.7E+02 0.0057 21.2 10.3 32 339-370 15-46 (78)
109 3s9g_A Protein hexim1; cyclin 27.3 2E+02 0.0068 21.7 6.9 19 537-555 64-82 (104)
110 1go4_E MAD1 (mitotic arrest de 25.6 2.2E+02 0.0077 21.7 7.1 34 126-159 11-44 (100)
111 2i1j_A Moesin; FERM, coiled-co 25.1 98 0.0033 32.2 6.2 9 223-231 413-421 (575)
112 2no2_A HIP-I, huntingtin-inter 24.4 2.5E+02 0.0084 21.7 15.9 34 343-376 9-42 (107)
113 3m91_A Proteasome-associated A 24.0 1.6E+02 0.0054 19.4 6.9 35 177-211 13-47 (51)
114 3uux_B Mitochondrial division 23.6 4E+02 0.014 23.8 10.9 55 417-471 168-222 (242)
115 2no2_A HIP-I, huntingtin-inter 23.3 2.6E+02 0.0089 21.6 16.0 33 316-348 10-42 (107)
116 1jnm_A Proto-oncogene C-JUN; B 23.2 1.8E+02 0.0062 19.8 6.2 32 457-488 25-56 (62)
117 2xv5_A Lamin-A/C; structural p 23.1 2.1E+02 0.0072 20.4 7.9 22 386-407 35-56 (74)
118 3ljm_A Coil Ser L9C; de novo d 22.8 1.1E+02 0.0036 16.9 3.5 22 3-24 6-27 (31)
119 4e61_A Protein BIM1; EB1-like 22.5 2.7E+02 0.0092 21.5 7.5 37 421-457 20-56 (106)
120 3sjb_C Golgi to ER traffic pro 20.8 2.7E+02 0.0092 20.9 6.1 18 534-551 52-69 (93)
121 4etp_A Kinesin-like protein KA 20.6 3E+02 0.01 27.0 8.4 12 421-432 47-58 (403)
122 1m1j_C Fibrinogen gamma chain; 20.3 6.1E+02 0.021 24.8 12.5 104 333-439 29-132 (409)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.83 E-value=9.1e-09 Score=118.51 Aligned_cols=136 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 333 AEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAES 412 (558)
Q Consensus 333 le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~ 412 (558)
+.+.+..+...+.++...+.........+......++.++..++..+.+....+..+...+..++.++..+...+.+...
T Consensus 1030 lek~~~~le~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~ 1109 (1184)
T 1i84_S 1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1109 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455554444555555555666666666666666666666666666666666666666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy8739 413 QVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAE 468 (558)
Q Consensus 413 ~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~ 468 (558)
.+..+...+..+..++.++...+.+.......+......+..++..++..+++...
T Consensus 1110 ~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~~ 1165 (1184)
T 1i84_S 1110 QKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165 (1184)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566666666666666666666665444444555555555666666655555543
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.79 E-value=1.5e-08 Score=116.77 Aligned_cols=176 Identities=20% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHH
Q psy8739 317 SEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKL 396 (558)
Q Consensus 317 ~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~l 396 (558)
..+..++.........+...+..++..+..+...+.........+.+.+..+...+..+...+......+..+......+
T Consensus 986 ~~l~~el~~lee~l~~l~~e~~~le~~i~~l~~~l~~~e~k~~~lek~~~~le~el~ele~~le~~e~~~~ele~~~~~l 1065 (1184)
T 1i84_S 986 KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL 1065 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333443333333444445555555555555555555555555666666667777777777777666667776667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 397 SIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQ 476 (558)
Q Consensus 397 e~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~ 476 (558)
+.++..+...+.++...+..+...+..++.++..+...++........+...+..++.++..+..++.+.......+...
T Consensus 1066 e~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q 1145 (1184)
T 1i84_S 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777788888877777766667777777888888888888887776666666666
Q ss_pred HHHHHHHHHHHHHhhH
Q psy8739 477 LSKANADAQLWRTKYE 492 (558)
Q Consensus 477 l~~l~~e~~~~k~kle 492 (558)
...+..++..++..++
T Consensus 1146 ~~~L~~ele~L~~~Ie 1161 (1184)
T 1i84_S 1146 KRDLSEELEALKTELE 1161 (1184)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777775
No 3
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=98.27 E-value=0.00056 Score=58.00 Aligned_cols=118 Identities=26% Similarity=0.378 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 175 LKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRAD 254 (558)
Q Consensus 175 l~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~ 254 (558)
+..+...+.++...+..+...+..++.++..++..++.++..+......+.+++.+|..|..+++..+.....+..+++.
T Consensus 43 ~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~ 122 (168)
T 3o0z_A 43 ISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKE 122 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666777778888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Q psy8739 255 LARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 302 (558)
Q Consensus 255 l~~el~~l~~~l~~~~~~~~~~~e~~~~~e~el~~lk~~le~~~~~~~ 302 (558)
|...+..+...... ..++. -.++..++..|+.....|.
T Consensus 123 L~Ekl~~lEKe~a~------~eid~----~~eLKalQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 123 AQDMLNHSEKEKNN------LEIDL----NYKLKSLQQRLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHHHHHH------HHHHH----HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh------hhHHH----HHHHHHHHHHHHHHHHHHH
Confidence 99999999886544 22222 1457778888877665554
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.69 E-value=0.019 Score=50.09 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 360 ATEKIAKQLQHQLNEVQGKLDETNR----SLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLA 435 (558)
Q Consensus 360 ~~e~~~~~le~~l~el~~~l~e~~~----~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~l 435 (558)
.+...+..+..++..++.++..... .++.+...+..+...+..+...+-+++...+.+++..+.....+.++...+
T Consensus 60 ~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kl 139 (189)
T 2v71_A 60 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRL 139 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHH
Confidence 3333444444444444444433322 245555555556666666666666666666666666666666666666666
Q ss_pred HHH
Q psy8739 436 DEE 438 (558)
Q Consensus 436 e~~ 438 (558)
+..
T Consensus 140 n~a 142 (189)
T 2v71_A 140 NQA 142 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 5
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.30 E-value=0.064 Score=45.50 Aligned_cols=81 Identities=10% Similarity=0.117 Sum_probs=47.1
Q ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 331 TKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEA 410 (558)
Q Consensus 331 ~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~ 410 (558)
+.+.+....++..+.+|...+..+.. .+..|+.++..|++.++...+.+......+..++..+..|...++.+
T Consensus 37 tEl~k~~~~~E~~~rELq~~~~~L~~-------~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~ 109 (168)
T 3o0z_A 37 TEMSKSISQLESLNRELQERNRILEN-------SKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHL 109 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554444 44456666667777777777777666666666666666666655555
Q ss_pred HHHHHHHH
Q psy8739 411 ESQVSQLS 418 (558)
Q Consensus 411 ~~~~~~~~ 418 (558)
......+.
T Consensus 110 k~~~~k~~ 117 (168)
T 3o0z_A 110 KHNLEKVE 117 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444333
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.27 E-value=0.11 Score=48.54 Aligned_cols=7 Identities=14% Similarity=-0.135 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy8739 396 LSIENSD 402 (558)
Q Consensus 396 le~e~~~ 402 (558)
++.++..
T Consensus 65 ~e~~i~~ 71 (256)
T 3na7_A 65 NEQTLQD 71 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 7
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=97.22 E-value=0.0096 Score=45.85 Aligned_cols=83 Identities=24% Similarity=0.194 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8739 121 YSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKD 200 (558)
Q Consensus 121 ~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~ 200 (558)
.++.|++++..+.+++..|+.++..|+.++..+...-. ......++..+.+++..++.+......+...+..+.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~------~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGK------SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999988865421 234455677777788777777777777776666666
Q ss_pred HHHHHHHHH
Q psy8739 201 KEIASLTAK 209 (558)
Q Consensus 201 ~el~~l~~~ 209 (558)
.++.+++.+
T Consensus 84 ~~~~~~k~K 92 (93)
T 3s4r_A 84 EDIMRLREK 92 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 666666554
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.08 E-value=0.16 Score=47.51 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=11.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 340 AHNETNNTRAAADQLAREKAATEKIAKQLQHQL 372 (558)
Q Consensus 340 le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l 372 (558)
++..+..+...+..+.....++...+..++..+
T Consensus 37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i 69 (256)
T 3na7_A 37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTL 69 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 9
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.00 E-value=0.13 Score=43.42 Aligned_cols=97 Identities=12% Similarity=0.164 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 396 LSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQR 475 (558)
Q Consensus 396 le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~ 475 (558)
++..+......++.....+..+...+..+...+..+...-+.....-..+..+++.+...+...-...+...+....|+.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444555555555555555555554444444444445555555555555555555555555666666
Q ss_pred HHHHHHHHHHHHHHhhH
Q psy8739 476 QLSKANADAQLWRTKYE 492 (558)
Q Consensus 476 ~l~~l~~e~~~~k~kle 492 (558)
.++.+...+..++.++.
T Consensus 106 ~id~lEd~L~~~Kek~~ 122 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYK 122 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666665555553
No 10
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.00 E-value=0.11 Score=42.77 Aligned_cols=58 Identities=26% Similarity=0.421 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Q psy8739 410 AESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEA 467 (558)
Q Consensus 410 ~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~ 467 (558)
....+..+......+...+.++...+++....+..+....+.++.++..|..++++..
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555666777777777777777777777777777777777777777654
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.98 E-value=0.066 Score=44.18 Aligned_cols=43 Identities=37% Similarity=0.581 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 118 ISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDL 160 (558)
Q Consensus 118 le~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~ 160 (558)
|+..+..+..+++++++.+..|...+.+++.++.+++..++++
T Consensus 81 Le~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 81 LEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677888888888888888888888888888888887654
No 12
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=96.87 E-value=0.026 Score=46.63 Aligned_cols=96 Identities=13% Similarity=0.205 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 395 KLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQ 474 (558)
Q Consensus 395 ~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~ 474 (558)
....++.++...+..+...+..+......++..|.++....... ...+...+..++.++..++..+.........|-
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~---l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 109 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELA---LKDARNKLAELEEALQKAKQDMARLLREYQELM 109 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555666666777666655432 334455555667777777666666655566666
Q ss_pred HHHHHHHHHHHHHHHhhHh
Q psy8739 475 RQLSKANADAQLWRTKYES 493 (558)
Q Consensus 475 ~~l~~l~~e~~~~k~kle~ 493 (558)
...-.|+.+|+.|++-|++
T Consensus 110 nvKl~Ld~EIatYRkLLEg 128 (129)
T 3tnu_B 110 NTKLALDVEIATYRKLLEG 128 (129)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhHCc
Confidence 6667789999999988764
No 13
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=96.84 E-value=0.024 Score=47.02 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q psy8739 393 KKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKAD 472 (558)
Q Consensus 393 ~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~ 472 (558)
+.....++.++...+..+...+..+......++..|.++....... ...+...+..++.++..++..+.........
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~---l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~ 109 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQ---LAQIQEMIGSVEEQLAQLRCEMEQQNQEYKI 109 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555556666777777776665433 3345555566677777777766666666666
Q ss_pred HHHHHHHHHHHHHHHHHhhHh
Q psy8739 473 LQRQLSKANADAQLWRTKYES 493 (558)
Q Consensus 473 l~~~l~~l~~e~~~~k~kle~ 493 (558)
|-...-.|+.+|+.|++-|++
T Consensus 110 Ll~vKl~Ld~EIatYRkLLEG 130 (131)
T 3tnu_A 110 LLDVKTRLEQEIATYRRLLEG 130 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhHCc
Confidence 767667889999999988764
No 14
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.69 E-value=0.1 Score=42.31 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q psy8739 422 ISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEE 466 (558)
Q Consensus 422 ~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~ 466 (558)
..++..+..++..+++..-.+.++...+..|..++.+++.-+++.
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeE 109 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEE 109 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666667777777777777777777777777666644
No 15
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.31 E-value=0.41 Score=40.35 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEE 438 (558)
Q Consensus 364 ~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~ 438 (558)
.+..|+..+..+...+..+...-......-..++.+|..|...+.++......+.+....++..|..+...+...
T Consensus 43 k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~ 117 (155)
T 2efr_A 43 KSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444333333333333333333444456666666666666666666666677777777777666666544
No 16
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.19 E-value=0.3 Score=39.51 Aligned_cols=93 Identities=16% Similarity=0.270 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 396 LSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQR 475 (558)
Q Consensus 396 le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~ 475 (558)
++..|..|+.+++.+......+.-.+..+...+.+++..++.+...+ ..++.++..++..+++..-.+..|+.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r-------~~~E~di~~lrK~lD~~~l~r~dLE~ 90 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR-------EEAENTLQSFRQDVDNASLARLDLER 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 34455555555555555544455555555555666666666554444 34567788888888888888899999
Q ss_pred HHHHHHHHHHHHHHhhHhHH
Q psy8739 476 QLSKANADAQLWRTKYESEG 495 (558)
Q Consensus 476 ~l~~l~~e~~~~k~kle~~~ 495 (558)
.+..+..++.=++.-++.++
T Consensus 91 ~iesL~eEl~FLKk~heeEl 110 (119)
T 3ol1_A 91 KVESLQEEIAFLKKLHEEEI 110 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887544
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.12 E-value=3.7 Score=51.59 Aligned_cols=96 Identities=15% Similarity=0.208 Sum_probs=71.2
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q psy8739 450 RNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNY 529 (558)
Q Consensus 450 ~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~~~ 529 (558)
.-++.++..+...+..........+..+..++..+..++.+|+. ...+-+.++ ..+...+..++.+.+-+..|
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~----~~~ek~~L~---~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYAT----LIRETEQIK---TESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence 44556777777777777777777777888888888888888862 222223333 46667788888899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy8739 530 STELFRLKGAYEEAQEQLEAVRR 552 (558)
Q Consensus 530 e~e~~~l~~~l~e~~~~~~~l~~ 552 (558)
..|..++...+..+..++..+.-
T Consensus 2083 ~~Ek~RW~~~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A 2083 NSERGRWEQQSENFNTQMSTVVG 2105 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccHHHHHHHHHHHHHhccH
Confidence 99999999999999988887653
No 18
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=95.92 E-value=0.12 Score=39.33 Aligned_cols=79 Identities=22% Similarity=0.344 Sum_probs=72.7
Q ss_pred CchHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhh
Q psy8739 1 AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADE 79 (558)
Q Consensus 1 ~~~e~~~~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~ 79 (558)
++.+.....++..+..++..+......+.++.....+|..+..+|..++.+.+.....+...+..++.++.++...+++
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~e 88 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVGE 88 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567888899999999999999999999999999999999999999999999999999999999999999998776654
No 19
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=95.84 E-value=0.14 Score=38.71 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Q psy8739 395 KLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIR 460 (558)
Q Consensus 395 ~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~ 460 (558)
++..++..+...+++....+..-...+..++..+.-++..+++..-.+..+..++.++..++.+|+
T Consensus 18 ~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 18 RVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444434444433333333344455556666666666666666666666666666666654
No 20
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.76 E-value=0.4 Score=36.55 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 361 TEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEE-AESQVSQLSKIKISLTTQLEDTKRLAD 436 (558)
Q Consensus 361 ~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e-~~~~~~~~~~~~~~l~~~l~el~~~le 436 (558)
++.........+..|...+......+..+...+..++.++.+|...+.+ +...+....+....++.....|+.+|.
T Consensus 17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 17 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444556666666777777777777777777888888887776644 344445555555555555555555554
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.62 E-value=0.36 Score=54.62 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 244 SRAKAEKQRADLARELEELGERL 266 (558)
Q Consensus 244 ~~~~~~~~~~~l~~el~~l~~~l 266 (558)
....+++++..|+.+++++...+
T Consensus 1024 kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1024 LVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555433
No 22
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.26 E-value=0.71 Score=35.16 Aligned_cols=42 Identities=29% Similarity=0.485 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739 227 LQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEE 268 (558)
Q Consensus 227 lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~ 268 (558)
+...+..|...+..++..+..++..+..++.++++|...|.+
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444445555555555555444433
No 23
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.23 E-value=8.5 Score=48.47 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 456 IDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY 491 (558)
Q Consensus 456 ~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl 491 (558)
...++.+++............+..|..+-..|....
T Consensus 2058 k~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A 2058 TEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQS 2093 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence 333333333333334444445555555555555444
No 24
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=95.14 E-value=0.41 Score=36.09 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q psy8739 316 VSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKK 395 (558)
Q Consensus 316 i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~ 395 (558)
|.+|+.+++.+...++.+.-++..+...+.++...++.-.. .+..++..+..++..+++..-.+.+++.++..
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~-------~R~~~E~d~~~LrkdvD~a~l~r~dLE~kves 74 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML-------QREEAENTLQSFRQDVDNASLARLDLERKVES 74 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34455555555444444444444444444444444443322 23344455555555555555555555555555
Q ss_pred HHHHHHHH
Q psy8739 396 LSIENSDL 403 (558)
Q Consensus 396 le~e~~~l 403 (558)
|..++.-|
T Consensus 75 L~eEl~fL 82 (86)
T 3swk_A 75 LQEEIAFL 82 (86)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 25
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.73 E-value=2.7 Score=35.21 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=64.6
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy8739 448 KFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECR 527 (558)
Q Consensus 448 ~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~ 527 (558)
.+..+..++..|...+.+....+...+.....++.++..+-..|++++.. .+.........++..+.
T Consensus 52 ~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~-------------MVa~ar~~~~~~e~r~~ 118 (154)
T 2ocy_A 52 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN-------------MVADARKEKYAIEILNK 118 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Confidence 34557888889999999999999999999999999999998888765432 22233444455555555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739 528 NYSTELFRLKGAYEEAQEQLEAVRREN 554 (558)
Q Consensus 528 ~~e~e~~~l~~~l~e~~~~~~~l~~~~ 554 (558)
.+...+......++.+..++..|+.-.
T Consensus 119 ~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 119 RLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555666666655555443
No 26
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=93.52 E-value=1.5 Score=33.22 Aligned_cols=72 Identities=19% Similarity=0.343 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 365 AKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLAD 436 (558)
Q Consensus 365 ~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le 436 (558)
+..+...+..+...+......+..+......+..+...|..++.++...+..+...+..+...+.++...++
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444455555555555555555555555555555555555566666666655543
No 27
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=93.37 E-value=1.2 Score=32.43 Aligned_cols=62 Identities=21% Similarity=0.316 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 427 QLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWR 488 (558)
Q Consensus 427 ~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k 488 (558)
.+.++++.++.+.+.+..+..++..+......+.+++.+.......|...+..+..++..++
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999998888888887777777776654
No 28
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.64 E-value=2.9 Score=32.52 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 395 KLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRL 434 (558)
Q Consensus 395 ~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~ 434 (558)
.++.++..+...+.+....+....+.....+..+..|+..
T Consensus 55 ~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rr 94 (101)
T 3u1c_A 55 VTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333334444444433
No 29
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.59 E-value=3.6 Score=33.59 Aligned_cols=86 Identities=20% Similarity=0.163 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy8739 122 SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDK 201 (558)
Q Consensus 122 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~ 201 (558)
+..++..+...+-....+...+..|+..|.+++..+.....++...-..++.++..++..+.........|-..+-.|+.
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~ 117 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDV 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555666666555555442221222222233334433333333333333333333344444
Q ss_pred HHHHHH
Q psy8739 202 EIASLT 207 (558)
Q Consensus 202 el~~l~ 207 (558)
||..++
T Consensus 118 EIatYR 123 (129)
T 3tnu_B 118 EIATYR 123 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 30
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=92.39 E-value=4.3 Score=33.92 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKR 433 (558)
Q Consensus 364 ~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~ 433 (558)
.+..++.++.+......+..+....+...+.-++..+.......+.....+..+...+..+.+.+..+..
T Consensus 53 r~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 53 KMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3444555555555555555555455444444455554444444444444444444444444444444443
No 31
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.19 E-value=3.8 Score=33.55 Aligned_cols=86 Identities=16% Similarity=0.100 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy8739 122 SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDK 201 (558)
Q Consensus 122 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~ 201 (558)
+.+++..++..+-....+...+..|+..|.+++..+.....++...-..++.++..++..+.........|-..+-.|+.
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~ 119 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQ 119 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555566666666666555542221222222233444444444433333333444444444444
Q ss_pred HHHHHH
Q psy8739 202 EIASLT 207 (558)
Q Consensus 202 el~~l~ 207 (558)
||..++
T Consensus 120 EIatYR 125 (131)
T 3tnu_A 120 EIATYR 125 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 32
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=91.89 E-value=3 Score=31.13 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy8739 420 IKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESE 494 (558)
Q Consensus 420 ~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~ 494 (558)
.+..++..+.++...+... ...+...+..++.++..++..+.........|-.....++.+|+.|++-++++
T Consensus 9 ~~~sLE~~l~e~e~~~~~~---~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLEGE 80 (84)
T 1gk4_A 9 TNESLERQMREMEENFAVE---AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGE 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence 3344455555555444322 23444455555666666666666655556666666677899999999988753
No 33
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=91.66 E-value=3.5 Score=31.42 Aligned_cols=83 Identities=22% Similarity=0.292 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 174 DLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRA 253 (558)
Q Consensus 174 el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~ 253 (558)
++..+.+.+...-.++..|+.....|+.++..++..- .+ . -...+...|.+|...++.....+..+.-+..
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~---~~---~---~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~d 80 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQG---KS---R---LGDLYEEEMRELRRQVDQLTNDKARVEVERD 80 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CC---C---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888888888877776431 11 1 1123566677777777766666666666666
Q ss_pred HHHHHHHHHHHH
Q psy8739 254 DLARELEELGER 265 (558)
Q Consensus 254 ~l~~el~~l~~~ 265 (558)
.|..++.+++..
T Consensus 81 nl~~~~~~~k~K 92 (93)
T 3s4r_A 81 NLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 666666666543
No 34
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.47 E-value=1 Score=36.67 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 366 KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEA-ESQVSQLSKIKISLTTQLEDTKRLADE 437 (558)
Q Consensus 366 ~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~-~~~~~~~~~~~~~l~~~l~el~~~le~ 437 (558)
......+..|...+.+....+..+...+..++.++.+|...+.+- ...++...+....++.....+..++.+
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e 114 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLRE 114 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777777777888888888888888887776543 444455555555555555555544443
No 35
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.34 E-value=5.7 Score=33.21 Aligned_cols=77 Identities=16% Similarity=0.031 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q psy8739 396 LSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLAD-EEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKAD 472 (558)
Q Consensus 396 le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le-~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~ 472 (558)
...++..|...+.+.......++..+..+..++.+|...|- +..............++.....|..++.+...-...
T Consensus 56 ~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 56 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDT 133 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555556666666666665532 222223333333333444444444444444433333
No 36
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.00 E-value=4.5 Score=31.40 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=23.9
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 444 TLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY 491 (558)
Q Consensus 444 ~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl 491 (558)
++...+..++.+++.+...+.+.................++..+.+++
T Consensus 48 sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 48 QLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555554444444444455555555555554
No 37
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=90.99 E-value=2.5 Score=31.73 Aligned_cols=51 Identities=14% Similarity=0.232 Sum_probs=34.5
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy8739 444 TLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESE 494 (558)
Q Consensus 444 ~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~ 494 (558)
.+...+..++.++..++..+.........|-.....++.+|+.|++-++++
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLEGE 82 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGE 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence 344444445666666666666555556666666677899999999988754
No 38
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=90.92 E-value=4.6 Score=31.35 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 395 KLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRL 434 (558)
Q Consensus 395 ~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~ 434 (558)
.++.++..+...+......+....+.....+..+..|+..
T Consensus 55 ~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRr 94 (101)
T 3u59_A 55 GTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333334444444333
No 39
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=90.47 E-value=3 Score=34.85 Aligned_cols=18 Identities=6% Similarity=0.189 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8739 346 NTRAAADQLAREKAATEK 363 (558)
Q Consensus 346 ~l~~~le~~~~~~~~~e~ 363 (558)
.....+..+.+..++.+.
T Consensus 21 ~a~~kLeeaek~adE~eR 38 (147)
T 2b9c_A 21 TALQKLEEAEKAADESER 38 (147)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444333333333
No 40
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.31 E-value=5.5 Score=31.27 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 386 LNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERAT 444 (558)
Q Consensus 386 ~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~ 444 (558)
++.++..+..+......+...+-+++...+++++..+....-+.++...++.....+.-
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnal 95 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAF 95 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444445555555555566666666666666666666666666666666655443333
No 41
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.84 E-value=1.1 Score=36.38 Aligned_cols=50 Identities=14% Similarity=0.270 Sum_probs=39.8
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHH
Q psy8739 446 LGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEG 495 (558)
Q Consensus 446 ~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~ 495 (558)
...+..+..++..|...+.+....+...+.....++.++..+-..|++++
T Consensus 38 ~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEA 87 (135)
T 2e7s_A 38 KRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA 87 (135)
T ss_dssp HHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888888888888888888888888888888888887554
No 42
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.82 E-value=6.1 Score=31.03 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 136 RNQLFQQKKKLEQENGGLKKDIEDLE 161 (558)
Q Consensus 136 ~~~l~~~~~~l~~~~~~l~~~~e~~~ 161 (558)
...|...+..|..+++.|+.++....
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~ 30 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQY 30 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777776443
No 43
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=88.94 E-value=3.2 Score=33.31 Aligned_cols=65 Identities=29% Similarity=0.459 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 197 QRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGE 264 (558)
Q Consensus 197 ~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~ 264 (558)
..|..+++.++..++... ...+..+..|..+|..|+.+|+.-+..+..+.-++..|..+++.+..
T Consensus 18 e~Lkreie~lk~ele~l~---~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 18 ERLYREISGLKAQLENMK---TESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554442 34555677888899999999988887777777777777777777644
No 44
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=88.49 E-value=7.3 Score=30.20 Aligned_cols=45 Identities=24% Similarity=0.425 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 223 QIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLE 267 (558)
Q Consensus 223 ~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~ 267 (558)
.+.-|..++.-...+...++..|.++.-++..|..++.-|+.++.
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456677888888888999999998888888888888888877654
No 45
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.00 E-value=7.9 Score=29.99 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=18.3
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 449 FRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY 491 (558)
Q Consensus 449 ~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl 491 (558)
+..++.+++.+...+.+.................+++.+.+++
T Consensus 53 iq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 53 LKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333333333444444555554444
No 46
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=87.97 E-value=3.1 Score=31.88 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy8739 415 SQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYES 493 (558)
Q Consensus 415 ~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~ 493 (558)
..+......++..+.++...+... ...+...+..++.++..++..+..-......|-...-.++.+|+.|++-+++
T Consensus 15 ~~Lq~~~~~LE~~l~e~E~~~~~e---~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLLEG 90 (95)
T 3mov_A 15 FQGQKESRACLERIQELEDLLAKE---KDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLEG 90 (95)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334444455556666666554432 3344445555666666666666655555556666666788899999988864
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.77 E-value=6.5 Score=41.45 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=23.6
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 448 KFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 448 ~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
.+..++.++..+...++........+...+..+..++..+..++.
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444455555555555555555555555555555555555554
No 48
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.39 E-value=12 Score=37.54 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q psy8739 454 HDIDNIREQLEEEA 467 (558)
Q Consensus 454 ~e~~~l~~~lee~~ 467 (558)
..|+.+++||+.+.
T Consensus 176 ~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 176 KDYEDQQKQLEQVI 189 (562)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 56666777776653
No 49
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=84.83 E-value=13 Score=29.48 Aligned_cols=39 Identities=28% Similarity=0.298 Sum_probs=18.8
Q ss_pred HHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 375 VQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQ 413 (558)
Q Consensus 375 l~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~ 413 (558)
-+..++..+......+..+.++..++..++..++.....
T Consensus 44 EqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~ 82 (167)
T 4gkw_A 44 EQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQL 82 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344444444444444445555555555555555444433
No 50
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.10 E-value=16 Score=30.11 Aligned_cols=16 Identities=44% Similarity=0.511 Sum_probs=6.5
Q ss_pred HhHHHHHHHHHHHHHH
Q psy8739 197 QRKDKEIASLTAKLED 212 (558)
Q Consensus 197 ~~l~~el~~l~~~le~ 212 (558)
..+..++.+++.++..
T Consensus 85 ~~~~kE~~~lK~el~~ 100 (138)
T 3hnw_A 85 ENKDKEIYDLKHELIA 100 (138)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 51
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.35 E-value=12 Score=27.33 Aligned_cols=46 Identities=26% Similarity=0.442 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 224 IKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEA 269 (558)
Q Consensus 224 ~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~ 269 (558)
+..|..+...|..+....+..+..+..++..|..+...+..++...
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445555555556666666666666666666543
No 52
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=82.08 E-value=13 Score=27.53 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy8739 139 LFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLED 212 (558)
Q Consensus 139 l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~ 212 (558)
+...+..|+..+.+++..+.....++...-..++.++..++..+.........|-..+-.|+.||..++.=++.
T Consensus 6 l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLEG 79 (84)
T 1gk4_A 6 LKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEG 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 34445556666666655554322222233334455555555555544455555555566666666666655543
No 53
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=81.80 E-value=18 Score=28.74 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Q psy8739 424 LTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEA 467 (558)
Q Consensus 424 l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~ 467 (558)
....+.+-+..++.+.+.+..-+..+..++.++..++..++...
T Consensus 37 VgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~ 80 (167)
T 4gkw_A 37 VGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKAD 80 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444455555666655556666666666666666666555443
No 54
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=80.67 E-value=3.1 Score=25.86 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=26.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8739 526 CRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 557 (558)
Q Consensus 526 ~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~~l 557 (558)
+.+++.....+..+..+++.++.+|.+++..|
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45677788888888889999999999988776
No 55
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=80.55 E-value=7.8 Score=29.61 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=11.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q psy8739 189 KKELEQTIQRKDKEIASLTAKLE 211 (558)
Q Consensus 189 ~~~le~~~~~l~~el~~l~~~le 211 (558)
...|-..+..++.+|..++.=++
T Consensus 67 Yq~LlnvKl~Le~EIatYrkLLE 89 (95)
T 3mov_A 67 YEQLLDVKLALDMEISAYRKLLE 89 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444555566665554443
No 56
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=79.13 E-value=18 Score=27.04 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy8739 187 RNKKELEQTIQRKDKEIASLTAKLED 212 (558)
Q Consensus 187 ~~~~~le~~~~~l~~el~~l~~~le~ 212 (558)
.....|-..+..|+.||..++.=++.
T Consensus 56 ~EYq~LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 56 DEYQELLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 33444444455566666666655543
No 57
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=78.38 E-value=3.3 Score=25.78 Aligned_cols=32 Identities=31% Similarity=0.115 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 121 YSQDTVDRLQQEEDARNQLFQQKKKLEQENGG 152 (558)
Q Consensus 121 ~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~ 152 (558)
.++.|++++..+.+++..|+..+..|+.+|..
T Consensus 7 ~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 7 ELQELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36889999999999999999999999988753
No 58
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.34 E-value=22 Score=27.61 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 456 IDNIREQLEEEAEGKADLQRQLSKANADAQL 486 (558)
Q Consensus 456 ~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~ 486 (558)
++.|..++...+++...-+..++++..++..
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333334333333
No 59
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=77.72 E-value=23 Score=27.71 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q psy8739 432 KRLADEEGRERATLLGKFRNLEHDIDNIRE 461 (558)
Q Consensus 432 ~~~le~~~~~~~~l~~~~~~le~e~~~l~~ 461 (558)
+.++..+...+..+...+..+..+.++|..
T Consensus 76 q~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 76 QEQMAVLMQSREQVSEELVRLQKDNDSLQG 105 (112)
T ss_dssp HHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 334444555555555566666666665553
No 60
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.98 E-value=19 Score=26.33 Aligned_cols=41 Identities=10% Similarity=0.396 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 452 LEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 452 le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
++.....+..+.+++...+..+...+..+..+...|..++.
T Consensus 32 LKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 32 LKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555556666666667777777777665
No 61
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=75.30 E-value=29 Score=27.64 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhh
Q psy8739 362 EKIAKQLQHQLNEVQGKLDETNRS 385 (558)
Q Consensus 362 e~~~~~le~~l~el~~~l~e~~~~ 385 (558)
...+..|...|+.|...++.....
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555544433
No 62
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=75.15 E-value=21 Score=25.78 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=33.8
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy8739 443 ATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESE 494 (558)
Q Consensus 443 ~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~ 494 (558)
..+...+..++.++..++..+.........|-.....++.+|+.|+.-++++
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGE 59 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGE 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444555566666666665555555666666667889999999998754
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.01 E-value=79 Score=31.98 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q psy8739 432 KRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADL 473 (558)
Q Consensus 432 ~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l 473 (558)
+..++.+...+..+...+..+...+......|.++......+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNL 482 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHH
Confidence 333444444444444444555555555555555555444443
No 64
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=73.54 E-value=24 Score=25.87 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhh
Q psy8739 3 TEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKI 62 (558)
Q Consensus 3 ~e~~~~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~ 62 (558)
..++...+.........+++.....+........++..++..|.+.+..++..+..+.-.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777777777777777666666555544433
No 65
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=72.70 E-value=25 Score=25.56 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy8739 423 SLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAE 468 (558)
Q Consensus 423 ~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~ 468 (558)
.+-.+|.+|+..+.++...+..+...++....++..|+.+++.-..
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ 68 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDA 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHH
Confidence 3455566666666666666666666666666666666666654443
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.62 E-value=88 Score=31.49 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=7.2
Q ss_pred HHHhHHHHHHHHHHHHH
Q psy8739 339 AAHNETNNTRAAADQLA 355 (558)
Q Consensus 339 ~le~e~~~l~~~le~~~ 355 (558)
.+...|++|..+|+.+.
T Consensus 61 DltkrINELKnqLEdls 77 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 67
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=68.53 E-value=32 Score=25.26 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q psy8739 422 ISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGK 470 (558)
Q Consensus 422 ~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~ 470 (558)
..++..+.+.-.-++.+.-++..+...+...+.+..-+.-.+.+....+
T Consensus 49 ~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkLaE~~Dek 97 (101)
T 1d7m_A 49 RELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAEAIDEK 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Confidence 3444455555555555555666666666666666555555555444433
No 68
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=67.33 E-value=37 Score=25.51 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 459 IREQLEEEAEGKADLQRQLSKANADAQLWR 488 (558)
Q Consensus 459 l~~~lee~~~~~~~l~~~l~~l~~e~~~~k 488 (558)
|..++.....+...-+..|+++...+...+
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~ 36 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333344333333333333444444333333
No 69
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=67.23 E-value=44 Score=26.24 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 122 SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDL 160 (558)
Q Consensus 122 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~ 160 (558)
.+.+...+.........+...+..+..++.++..-++.+
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666666666666665555443
No 70
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=67.04 E-value=33 Score=24.76 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8739 510 RRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVR 551 (558)
Q Consensus 510 ~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~ 551 (558)
.++.+++.........++....++..+++.+..++-.+..++
T Consensus 35 ~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 35 SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345556666666666667777777777777777777766553
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.61 E-value=1.1e+02 Score=30.79 Aligned_cols=13 Identities=8% Similarity=-0.169 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy8739 476 QLSKANADAQLWR 488 (558)
Q Consensus 476 ~l~~l~~e~~~~k 488 (558)
.+..++..+...+
T Consensus 457 ~~~~~~~~~~~~~ 469 (487)
T 3oja_A 457 LNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhhhhhHhcc
Confidence 3333333333333
No 72
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=66.49 E-value=95 Score=29.87 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=10.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q psy8739 451 NLEHDIDNIREQLEEEAEGKADL 473 (558)
Q Consensus 451 ~le~e~~~l~~~lee~~~~~~~l 473 (558)
.|+..+..|+..+..-...+..|
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~L 139 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLL 139 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 34445555554444433333333
No 73
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=66.20 E-value=29 Score=23.74 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=29.5
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy8739 448 KFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESE 494 (558)
Q Consensus 448 ~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~ 494 (558)
.+..++.++..++..+.........|-.....++.+|+.|+.-++++
T Consensus 8 ~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLEgE 54 (59)
T 1gk6_A 8 KVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEGE 54 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 33444555555555555444455556666667888999999888753
No 74
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=64.57 E-value=43 Score=25.19 Aligned_cols=45 Identities=24% Similarity=0.425 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 223 QIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLE 267 (558)
Q Consensus 223 ~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~ 267 (558)
.+.-|..++.-...++..++..|.++.-++..|..++.-+..++.
T Consensus 41 ~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~ 85 (94)
T 3jsv_C 41 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445577777778888888888888887777777777777766543
No 75
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=62.98 E-value=41 Score=24.49 Aligned_cols=9 Identities=33% Similarity=0.497 Sum_probs=3.2
Q ss_pred HHHHHHhhh
Q psy8739 371 QLNEVQGKL 379 (558)
Q Consensus 371 ~l~el~~~l 379 (558)
.|..++..+
T Consensus 28 ~v~~le~~L 36 (79)
T 3cvf_A 28 QLRAMERSL 36 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 76
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=61.73 E-value=44 Score=24.36 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 122 SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKD 156 (558)
Q Consensus 122 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~ 156 (558)
...+..++++.+..+..|+..+..++..+.+.+..
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~ 42 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAE 42 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455566666665565555555555555555433
No 77
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=60.90 E-value=54 Score=25.18 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 125 TVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE 158 (558)
Q Consensus 125 l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e 158 (558)
....+.........+...+..++.++.+...-++
T Consensus 6 ~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~ 39 (107)
T 1fxk_A 6 QLAQFQQLQQQAQAISVQKQTVEMQINETQKALE 39 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555555555544443
No 78
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=59.45 E-value=48 Score=24.09 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy8739 319 MGEQIDQLNKLK 330 (558)
Q Consensus 319 L~~~le~~~~~k 330 (558)
|++-++..-+.+
T Consensus 15 LQSALeaEIqAK 26 (81)
T 1wt6_A 15 LQEALEEEVLTR 26 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 79
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=58.89 E-value=49 Score=24.00 Aligned_cols=37 Identities=8% Similarity=0.218 Sum_probs=16.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q psy8739 308 LRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNET 344 (558)
Q Consensus 308 lr~~~~~~i~~L~~~le~~~~~k~~le~~~~~le~e~ 344 (558)
+|+++...+...+.+++.+.+....|..-...++.-+
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi 48 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMV 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444444444455444444444444444443333
No 80
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=58.24 E-value=33 Score=27.30 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q psy8739 225 KELQARIEELEEEV 238 (558)
Q Consensus 225 ~~lq~~i~~l~~el 238 (558)
..|+.....|-.++
T Consensus 86 AqLQ~AY~~LfqeY 99 (130)
T 3cl3_D 86 AQLQVAYHQLFQEY 99 (130)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444433333
No 81
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=56.21 E-value=38 Score=21.92 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHH
Q psy8739 9 QLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLE 50 (558)
Q Consensus 9 ~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~ 50 (558)
.|-.++..++....-+.+.+.+...++.+|+.+..+++.-+.
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLK 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence 344555555555555666666666666666666665554443
No 82
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=53.51 E-value=50 Score=26.26 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8739 350 AADQLAREKAATEKIAKQLQHQLNEVQGKLDE 381 (558)
Q Consensus 350 ~le~~~~~~~~~e~~~~~le~~l~el~~~l~e 381 (558)
.++.+...+..++..+..+...+..+...+++
T Consensus 17 kL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee 48 (130)
T 3cl3_D 17 RLEAATKECQALEGRARAASEQARQLESEREA 48 (130)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33333344444444444444444444444433
No 83
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.97 E-value=1.6e+02 Score=28.26 Aligned_cols=18 Identities=6% Similarity=0.189 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8739 312 HNDAVSEMGEQIDQLNKL 329 (558)
Q Consensus 312 ~~~~i~~L~~~le~~~~~ 329 (558)
+...|+.|+..|+.+.+.
T Consensus 65 ~~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQKN 82 (390)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344555555555554443
No 84
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=51.13 E-value=65 Score=23.07 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 440 RERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKA 480 (558)
Q Consensus 440 ~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l 480 (558)
-.+.+++..+-.+-.+...++..+.....++..+...+..+
T Consensus 30 vvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 30 IVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555444444443333
No 85
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=49.81 E-value=1.6e+02 Score=27.19 Aligned_cols=15 Identities=47% Similarity=0.842 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy8739 252 RADLARELEELGERL 266 (558)
Q Consensus 252 ~~~l~~el~~l~~~l 266 (558)
...+..++.++...+
T Consensus 17 r~~l~~~~eel~~~L 31 (273)
T 3s84_A 17 KEEIGKELEELRARL 31 (273)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 344555555555544
No 86
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=49.77 E-value=72 Score=23.18 Aligned_cols=48 Identities=17% Similarity=0.112 Sum_probs=35.9
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 445 LLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 445 l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
+...+..|+..+.+....++++......-+..|..+...+..+..++.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677778888888888877777777888888888888877775
No 87
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=49.20 E-value=93 Score=24.29 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8739 223 QIKELQARIEELEEEVEA 240 (558)
Q Consensus 223 ~~~~lq~~i~~l~~el~~ 240 (558)
.+.+|+.+|..|...|..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455544444433
No 88
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=46.89 E-value=77 Score=22.71 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhh
Q psy8739 287 MSKLRRDLEEANIQH 301 (558)
Q Consensus 287 l~~lk~~le~~~~~~ 301 (558)
+..++.+++......
T Consensus 11 l~eiRaQYE~ia~kn 25 (77)
T 3trt_A 11 MRDVRQQYESVAAKN 25 (77)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 455666666555433
No 89
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=45.74 E-value=99 Score=23.65 Aligned_cols=15 Identities=33% Similarity=0.240 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy8739 399 ENSDLLRQLEEAESQ 413 (558)
Q Consensus 399 e~~~l~~~l~e~~~~ 413 (558)
++.-|+-.+++.+..
T Consensus 31 qVdlLKD~LEe~eE~ 45 (103)
T 4h22_A 31 QVDTLKDMLLELEEQ 45 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 90
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=43.69 E-value=1.1e+02 Score=23.72 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy8739 510 RRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAV 550 (558)
Q Consensus 510 ~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l 550 (558)
.....+...++.+...+..++..+..+...+.++...+..+
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666776666666666554
No 91
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=41.98 E-value=1e+02 Score=22.68 Aligned_cols=36 Identities=0% Similarity=0.088 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHH
Q psy8739 315 AVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAA 350 (558)
Q Consensus 315 ~i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~ 350 (558)
.+..|+..++...-++..+-+.+..++.-+..+..+
T Consensus 5 ~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e 40 (101)
T 1d7m_A 5 RLAGLENSLESEKVSREQLIKQKDQLNSLLASLESE 40 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555556666666665555544433
No 92
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=41.96 E-value=1e+02 Score=22.68 Aligned_cols=15 Identities=20% Similarity=0.561 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhhhHH
Q psy8739 367 QLQHQLNEVQGKLDE 381 (558)
Q Consensus 367 ~le~~l~el~~~l~e 381 (558)
.+..+|..|++.++.
T Consensus 31 ~Lq~Ev~~LRGqiE~ 45 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQE 45 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHH
Confidence 333333333333333
No 93
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.23 E-value=98 Score=22.02 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy8739 515 LAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRR 552 (558)
Q Consensus 515 l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~ 552 (558)
|+..+.....+++..+..+..+...+.+....+..|+.
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 94
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=39.56 E-value=81 Score=20.87 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=24.2
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 445 LLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKA 480 (558)
Q Consensus 445 l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l 480 (558)
+..++..+..+...+...++++..++..|+..+-++
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566677777777777777777777665554
No 95
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=39.02 E-value=50 Score=23.46 Aligned_cols=10 Identities=10% Similarity=-0.014 Sum_probs=3.6
Q ss_pred hhHHhHhhhH
Q psy8739 61 KIKISLTTQL 70 (558)
Q Consensus 61 k~~~~l~~ql 70 (558)
.+...|..++
T Consensus 50 ~en~~Lr~~i 59 (70)
T 1gd2_E 50 LENDQLRQKV 59 (70)
T ss_dssp HHHHHHTTHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 96
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.91 E-value=82 Score=20.75 Aligned_cols=34 Identities=12% Similarity=0.268 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Q psy8739 430 DTKRLADEEGRERATLLGKFRNLEHDIDNIREQL 463 (558)
Q Consensus 430 el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~l 463 (558)
+++.++..+...+..+...++....++..|..++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344443344444444444444444443333
No 97
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=36.81 E-value=1.2e+02 Score=22.01 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=15.3
Q ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHH
Q psy8739 13 QLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEE 51 (558)
Q Consensus 13 ~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e 51 (558)
.+++++.+++++............--..++..|+.+++.
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333344444444443333333333333333333333333
No 98
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=36.60 E-value=1.1e+02 Score=21.36 Aligned_cols=45 Identities=7% Similarity=0.059 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739 511 RVDDLAAELDASQKECRNYST-----ELFRLKGAYEEAQEQLEAVRRENK 555 (558)
Q Consensus 511 ~~~~l~~~~~~~~~~~~~~e~-----e~~~l~~~l~e~~~~~~~l~~~~~ 555 (558)
.+..+..++-.+..++...+. .+.+++++++.+...++.+.....
T Consensus 7 ~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 7 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666666666666665 556677777777777777766543
No 99
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=36.25 E-value=2.6e+02 Score=25.74 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=6.4
Q ss_pred HHhhHHhhHHHHHHH
Q psy8739 167 QKRKIEGDLKLTQEA 181 (558)
Q Consensus 167 ~k~~le~el~~~~~~ 181 (558)
.+..+..++.+++..
T Consensus 16 lr~~l~~~~eel~~~ 30 (273)
T 3s84_A 16 LKEEIGKELEELRAR 30 (273)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444444433
No 100
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=35.95 E-value=1.4e+02 Score=22.66 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---hhHHHHHhhHH
Q psy8739 141 QQKKKLEQENGGLKKDIEDLE---GDVEKQKRKIE 172 (558)
Q Consensus 141 ~~~~~l~~~~~~l~~~~e~~~---~~le~~k~~le 172 (558)
..+.+|...|+++...++.+. ..+.+++.-+.
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~ 49 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYE 49 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666543 34455554443
No 101
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=33.70 E-value=1.1e+02 Score=31.70 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=8.2
Q ss_pred HHHHhHHHHHhHHHHHHHHHH
Q psy8739 332 KAEHERNAAHNETNNTRAAAD 352 (558)
Q Consensus 332 ~le~~~~~le~e~~~l~~~le 352 (558)
.+++.+..|+..+..++....
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~ 352 (575)
T 2i1j_A 332 RAEKKQQEYQDRLRQMQEEME 352 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 333444444444433333333
No 102
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.39 E-value=1.6e+02 Score=22.40 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy8739 511 RVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLE 548 (558)
Q Consensus 511 ~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~ 548 (558)
....+...++.+...+..++..+..+...+.++...+.
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555556666666666666665555555543
No 103
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=32.92 E-value=1.6e+02 Score=22.45 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy8739 248 AEKQRADLARELEELGERLEE 268 (558)
Q Consensus 248 ~~~~~~~l~~el~~l~~~l~~ 268 (558)
..+....|..++..++.+|..
T Consensus 63 ~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 63 EKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 335555666666777776665
No 104
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.06 E-value=1.3e+02 Score=20.69 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHH
Q psy8739 431 TKRLADEEGRERATLLGKFRNLEHDIDNI 459 (558)
Q Consensus 431 l~~~le~~~~~~~~l~~~~~~le~e~~~l 459 (558)
+...+..+...+..|...+..++.++..|
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 105
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=30.16 E-value=4.2e+02 Score=26.29 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739 455 DIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE 492 (558)
Q Consensus 455 e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle 492 (558)
-...|+.+|.+.+.....++.+....+..+..+..-|+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLD 435 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH
Confidence 33445555666655555666665556666666655554
No 106
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=29.72 E-value=1.8e+02 Score=22.04 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=9.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q psy8739 340 AHNETNNTRAAADQLAREKAATEK 363 (558)
Q Consensus 340 le~e~~~l~~~le~~~~~~~~~e~ 363 (558)
|...|.++...++.....+..+.+
T Consensus 20 L~~Ki~el~~ei~ke~~~regl~K 43 (98)
T 2ke4_A 20 LQQQLEERSRELQKEVDQREALKK 43 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333333
No 107
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.52 E-value=1.2e+02 Score=20.19 Aligned_cols=24 Identities=4% Similarity=-0.028 Sum_probs=9.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHH
Q psy8739 522 SQKECRNYSTELFRLKGAYEEAQE 545 (558)
Q Consensus 522 ~~~~~~~~e~e~~~l~~~l~e~~~ 545 (558)
+..++..+..+|..|..++.++..
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 108
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.60 E-value=1.7e+02 Score=21.20 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=13.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 339 AAHNETNNTRAAADQLAREKAATEKIAKQLQH 370 (558)
Q Consensus 339 ~le~e~~~l~~~le~~~~~~~~~e~~~~~le~ 370 (558)
.+...+....++++.+.+...++..-..+++.
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~ 46 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEE 46 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444444444444444444444433333333
No 109
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=27.34 E-value=2e+02 Score=21.67 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy8739 537 KGAYEEAQEQLEAVRRENK 555 (558)
Q Consensus 537 ~~~l~e~~~~~~~l~~~~~ 555 (558)
-.++.++...++.|..+|.
T Consensus 64 ~~~v~eLe~everL~~ENq 82 (104)
T 3s9g_A 64 DARVRELELELDRLRAENL 82 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 110
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.57 E-value=2.2e+02 Score=21.66 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 126 VDRLQQEEDARNQLFQQKKKLEQENGGLKKDIED 159 (558)
Q Consensus 126 ~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~ 159 (558)
.+.+.........|...+.+|..++..|+..++.
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666677666666653
No 111
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=25.12 E-value=98 Score=32.20 Aligned_cols=9 Identities=22% Similarity=0.464 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q psy8739 223 QIKELQARI 231 (558)
Q Consensus 223 ~~~~lq~~i 231 (558)
++...+..+
T Consensus 413 ~~~~~~~~~ 421 (575)
T 2i1j_A 413 EIRAKQEEV 421 (575)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 333333333
No 112
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=24.36 E-value=2.5e+02 Score=21.71 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 343 ETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQ 376 (558)
Q Consensus 343 e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~ 376 (558)
...++..++........++...+..|+..+..+.
T Consensus 9 K~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 9 KNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555556666655555544
No 113
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.03 E-value=1.6e+02 Score=19.38 Aligned_cols=35 Identities=11% Similarity=0.315 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy8739 177 LTQEAVADLERNKKELEQTIQRKDKEIASLTAKLE 211 (558)
Q Consensus 177 ~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le 211 (558)
+++.++..+......|...+.....+|..++..++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444443
No 114
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=23.60 E-value=4e+02 Score=23.83 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q psy8739 417 LSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKA 471 (558)
Q Consensus 417 ~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~ 471 (558)
+.-.+.-+..+|.++-..|..+...+..+...+..++.+=.+|...+........
T Consensus 168 L~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rie 222 (242)
T 3uux_B 168 LNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLD 222 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3334455666677777777777777777777777776666666655555544433
No 115
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=23.25 E-value=2.6e+02 Score=21.58 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy8739 316 VSEMGEQIDQLNKLKTKAEHERNAAHNETNNTR 348 (558)
Q Consensus 316 i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~ 348 (558)
..+...+|.........+.+.+..|...+..+.
T Consensus 10 ~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 10 NAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555565555666667777777776666654
No 116
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=23.19 E-value=1.8e+02 Score=19.76 Aligned_cols=32 Identities=6% Similarity=0.146 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 457 DNIREQLEEEAEGKADLQRQLSKANADAQLWR 488 (558)
Q Consensus 457 ~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k 488 (558)
..|...+..+......|...+..+..++..|+
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 117
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=23.06 E-value=2.1e+02 Score=20.44 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8739 386 LNDFDAAKKKLSIENSDLLRQL 407 (558)
Q Consensus 386 ~~~l~~~~~~le~e~~~l~~~l 407 (558)
...+-..+-.|+.+|..+..-+
T Consensus 35 Yq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 35 YQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555554433
No 118
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=22.84 E-value=1.1e+02 Score=16.89 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHhhhHHH
Q psy8739 3 TEKIAKQLQHQLNEVQGKLDET 24 (558)
Q Consensus 3 ~e~~~~~le~~l~e~~~~~ee~ 24 (558)
.+++|..++..+.-+..+++.+
T Consensus 6 lekkcaalesklqalekkleal 27 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777766666544
No 119
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=22.52 E-value=2.7e+02 Score=21.46 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Q psy8739 421 KISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDID 457 (558)
Q Consensus 421 ~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~ 457 (558)
...+..++.+++..++.+.+.|+-+-..++.++-=+.
T Consensus 20 i~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ 56 (106)
T 4e61_A 20 IGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVH 56 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666554443
No 120
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=20.79 E-value=2.7e+02 Score=20.86 Aligned_cols=18 Identities=0% Similarity=0.193 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8739 534 FRLKGAYEEAQEQLEAVR 551 (558)
Q Consensus 534 ~~l~~~l~e~~~~~~~l~ 551 (558)
.+++++++.+...++.+.
T Consensus 52 aKL~Rk~DKl~~ele~l~ 69 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNLK 69 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 121
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.58 E-value=3e+02 Score=26.97 Aligned_cols=12 Identities=17% Similarity=0.487 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q psy8739 421 KISLTTQLEDTK 432 (558)
Q Consensus 421 ~~~l~~~l~el~ 432 (558)
++.+.+++.+++
T Consensus 47 rr~l~n~~~elk 58 (403)
T 4etp_A 47 RRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 334444444443
No 122
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.31 E-value=6.1e+02 Score=24.80 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 333 AEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAES 412 (558)
Q Consensus 333 le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~ 412 (558)
|-+....+...+..|+..+..+......+..-++.+..- ....-.......+.+....++|..++..+...+.....
T Consensus 29 L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~---~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~ 105 (409)
T 1m1j_C 29 FNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI---YPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHEN 105 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 413 QVSQLSKIKISLTTQLEDTKRLADEEG 439 (558)
Q Consensus 413 ~~~~~~~~~~~l~~~l~el~~~le~~~ 439 (558)
.+..+...+......|..++..+..+.
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Done!