Query psy8739
Match_columns 558
No_of_seqs 332 out of 2186
Neff 9.6
Searched_HMMs 13730
Date Fri Aug 16 17:57:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8739.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8739hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 60.4 27 0.002 25.2 12.2 34 126-159 7-40 (107)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 55.9 32 0.0024 24.8 11.3 35 123-157 68-102 (107)
3 d1seta1 a.2.7.1 (A:1-110) Sery 40.7 58 0.0043 23.3 9.6 35 6-40 29-63 (110)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 39.0 69 0.0051 23.7 12.7 39 512-550 90-128 (133)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 30.5 96 0.007 22.8 13.8 35 123-157 4-38 (133)
6 d1ivsa1 a.2.7.3 (A:797-862) Va 18.1 1.2E+02 0.0084 19.3 6.0 26 187-212 4-29 (66)
7 d2ap3a1 a.24.27.1 (A:12-196) H 16.9 1.9E+02 0.014 21.3 16.7 6 455-460 145-150 (185)
8 d1wu9a1 a.245.1.1 (A:191-249) 11.2 1.8E+02 0.013 18.1 5.2 31 423-453 5-35 (59)
9 d1lvfa_ a.47.2.1 (A:) Syntaxin 7.5 3.5E+02 0.026 18.7 11.1 88 469-556 7-105 (106)
10 d1nkpa_ a.38.1.1 (A:) Myc prot 5.3 4.2E+02 0.031 17.4 5.5 34 120-153 52-85 (88)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=60.37 E-value=27 Score=25.25 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 126 VDRLQQEEDARNQLFQQKKKLEQENGGLKKDIED 159 (558)
Q Consensus 126 ~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~ 159 (558)
...+.........+..++..++.++.+...-++.
T Consensus 7 ~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~e 40 (107)
T d1fxka_ 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEE 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555666666655555543
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=55.89 E-value=32 Score=24.78 Aligned_cols=35 Identities=9% Similarity=0.220 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 123 QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDI 157 (558)
Q Consensus 123 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 157 (558)
..+..+++........|.+....++.++.++...+
T Consensus 68 ~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445555555555544444443
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=40.67 E-value=58 Score=23.34 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHh
Q psy8739 6 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSI 40 (558)
Q Consensus 6 ~~~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~ 40 (558)
..-.+......+...++.+....+.+...+++...
T Consensus 29 ~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~ 63 (110)
T d1seta1 29 ALLALDREVQELKKRLQEVQTERNQVAKRVPKAPP 63 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556777777888888888888888888776543
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=39.03 E-value=69 Score=23.73 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy8739 512 VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAV 550 (558)
Q Consensus 512 ~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l 550 (558)
+.-+...++.++..+..+..++..+...+..+...+..+
T Consensus 90 ~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l 128 (133)
T d1fxkc_ 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555544443
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=30.54 E-value=96 Score=22.84 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 123 QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDI 157 (558)
Q Consensus 123 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 157 (558)
.+|...++........|...+..++..+.++..-.
T Consensus 4 ~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~ 38 (133)
T d1fxkc_ 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILE 38 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555554333
No 6
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=18.15 E-value=1.2e+02 Score=19.30 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy8739 187 RNKKELEQTIQRKDKEIASLTAKLED 212 (558)
Q Consensus 187 ~~~~~le~~~~~l~~el~~l~~~le~ 212 (558)
....++.+.+.+++.++..+...+..
T Consensus 4 ~E~~RL~K~l~kl~~~i~~~~~kL~N 29 (66)
T d1ivsa1 4 EWRRRQEKRLKELLALAERSQRKLAS 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34455555555566666666555543
No 7
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=16.89 E-value=1.9e+02 Score=21.27 Aligned_cols=6 Identities=0% Similarity=0.158 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy8739 455 DIDNIR 460 (558)
Q Consensus 455 e~~~l~ 460 (558)
.+..+.
T Consensus 145 ~~~~l~ 150 (185)
T d2ap3a1 145 TQQGVN 150 (185)
T ss_dssp CHHHHH
T ss_pred HHHHHH
Confidence 333333
No 8
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.21 E-value=1.8e+02 Score=18.11 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy8739 423 SLTTQLEDTKRLADEEGRERATLLGKFRNLE 453 (558)
Q Consensus 423 ~l~~~l~el~~~le~~~~~~~~l~~~~~~le 453 (558)
.+..++.+++..++.+.+.|.-.-..++.++
T Consensus 5 ~L~~ei~elk~~v~~lEkERdFYF~KLRdIE 35 (59)
T d1wu9a1 5 ELMQQVNVLKLTVEDLEKERDFYFGKLRNIE 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555444
No 9
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.53 E-value=3.5e+02 Score=18.72 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhhhh----------HHHHHH
Q psy8739 469 GKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEE-RRVDDLAAELDASQKECRNYST----------ELFRLK 537 (558)
Q Consensus 469 ~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~-~~~~~l~~~~~~~~~~~~~~e~----------e~~~l~ 537 (558)
.+.+++..+.++..-...|..-..........++..+.+.+ ..+..+.-+++.+++.+...+. ++..-+
T Consensus 7 v~~EVq~s~~~~~~l~~~w~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~l~~~ei~~Rr 86 (106)
T d1lvfa_ 7 VKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDATELSIRK 86 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy8739 538 GAYEEAQEQLEAVRRENKN 556 (558)
Q Consensus 538 ~~l~e~~~~~~~l~~~~~~ 556 (558)
.-+..+...+..++.....
T Consensus 87 ~fi~~~~~~I~~~~~~l~~ 105 (106)
T d1lvfa_ 87 AFITSTRQIVRDMKDQMSA 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
No 10
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.30 E-value=4.2e+02 Score=17.36 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739 120 LYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGL 153 (558)
Q Consensus 120 ~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l 153 (558)
.++..|...+.........|......|..++..|
T Consensus 52 ~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!