RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8739
(558 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 161 bits (409), Expect = 3e-42
Identities = 76/284 (26%), Positives = 138/284 (48%), Gaps = 27/284 (9%)
Query: 8 KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLT 67
++L+ L+E++ +++E A KKK+ + DL QLEE E+ +L K++
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982
Query: 68 TQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVD 127
+++ + ++ ++ K + E L+ D
Sbjct: 983 GKIKKME----DDILIMEDQNNKLTKERKLLEER--------------------VSDLTT 1018
Query: 128 RLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLE---GDVEKQKRKIEGDLKLTQEAVAD 184
L +EE+ L + K K E L+ ++ E ++EK KRK+EG+ E +A+
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078
Query: 185 LERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQS 244
L+ EL+ + +K++E+ + A+LEDE K+I+EL++ I +L+E++E+E+ +
Sbjct: 1079 LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA 1138
Query: 245 RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMS 288
R KAEKQ+ DL+ ELE L LE+ T+ Q EL +
Sbjct: 1139 RNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 124 bits (313), Expect = 6e-30
Identities = 67/331 (20%), Positives = 144/331 (43%), Gaps = 8/331 (2%)
Query: 191 ELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAE- 249
E+ +Q KD+E+ + + + + + +++ +L L+E+++AE + A+AE
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913
Query: 250 ------KQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 303
++ +L L E+ R+EE + KK + +M L LEE
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE-AARQ 972
Query: 304 TLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEK 363
L + + + +M + I + K ER ++ + + K
Sbjct: 973 KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032
Query: 364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKIS 423
+ + + ++E++ +L + +S + + K+KL E+SDL Q+ E ++Q+++L
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092
Query: 424 LTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANAD 483
+L+ ++E ++ L K R LE I +++E LE E + ++Q + +
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152
Query: 484 AQLWRTKYESEGVARAEELEESKSEERRVDD 514
+ +T+ E A + E S+ + DD
Sbjct: 1153 LEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 119 bits (301), Expect = 2e-28
Identities = 56/346 (16%), Positives = 127/346 (36%), Gaps = 9/346 (2%)
Query: 221 QKQIKELQARIEELEEEVEA---ERQSRAKAEKQRADLARELEELGERLEEAGGATSAQI 277
Q ++ + + E++ EL+ ER ++A
Sbjct: 825 QYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELE 884
Query: 278 ELNKKREAEMSKLRRDLE-EANIQHE-----STLANLRKKHNDAVSEMGEQIDQLNKLKT 331
+ + + E + L+ L+ E + E LA +++ + + EM +I++ +
Sbjct: 885 QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQ 944
Query: 332 KAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDA 391
+ + E+ + + ++ + + ++ +++ + N
Sbjct: 945 QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004
Query: 392 AKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRN 451
+K L SDL L E E + L+K+K + + + + +E + R L R
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064
Query: 452 LEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERR 511
LE + ++ EQ+ E A+L+ QL+K + Q + E E + L++ + E
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124
Query: 512 VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 557
+ DL +L++ + + L E + +LE
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQ 1170
Score = 118 bits (298), Expect = 4e-28
Identities = 69/358 (19%), Positives = 157/358 (43%), Gaps = 29/358 (8%)
Query: 128 RLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLER 187
R ++E A+++ Q+ K+ +Q+ K++E + ++K ++ L+ E A+ E
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913
Query: 188 NKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAK 247
+ L Q ++ + + A++E+E+ + Q + K++Q ++ +LEE++E E +R K
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 248 AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLAN 307
+ ++ +++++ + I + + + +++K R+ LEE + LA
Sbjct: 974 LQLEKVTADGKIKKMED-----------DILIMEDQNNKLTKERKLLEERVSDLTTNLA- 1021
Query: 308 LRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQ 367
E E+ L KLK K E + + + + + EKI ++
Sbjct: 1022 ----------EEEEKAKNLTKLKNKHE-------SMISELEVRLKKEEKSRQELEKIKRK 1064
Query: 368 LQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQ 427
L+ + +++ ++ E + + A K E L +LE+ SQ + K L +
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124
Query: 428 LEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQ 485
+ D + + E R + R+L +++ ++ +LE+ + A Q D
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 112 bits (281), Expect = 5e-26
Identities = 59/306 (19%), Positives = 132/306 (43%), Gaps = 4/306 (1%)
Query: 128 RLQQEEDARNQLFQQKKKLE---QENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVAD 184
L++ E QL ++K L+ Q L + E++ + +K+++E L + + +
Sbjct: 879 ELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEE 938
Query: 185 LERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQS 244
E ++L+ ++ +++ L +LE+E+ K Q + +I+++E+++
Sbjct: 939 EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ 998
Query: 245 RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHEST 304
K K+R L + +L L E +L K E+ +S+L L++ +
Sbjct: 999 NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1058
Query: 305 LANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKI 364
RK ++ S++ EQI +L + + + E A + +K K
Sbjct: 1059 EKIKRKLEGES-SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117
Query: 365 AKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISL 424
++L+ ++++Q L+ + N + K+ LS E L +LE+ + +++ S
Sbjct: 1118 IRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSD 1177
Query: 425 TTQLED 430
+D
Sbjct: 1178 YKDDDD 1183
Score = 100 bits (251), Expect = 2e-22
Identities = 50/258 (19%), Positives = 111/258 (43%), Gaps = 18/258 (6%)
Query: 127 DRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEG----------DVEKQKRKIEGDLK 176
R+++EE+ QL +KKK++Q+ L++ +E+ E + + +K+E D+
Sbjct: 934 ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDIL 993
Query: 177 LTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEE 236
+ ++ L + +K LE+ + +A K ++ L K++ I EL+ R+++
Sbjct: 994 IMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK--- 1050
Query: 237 EVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEE 296
E +SR + EK + L E +L E++ E + K+E E+ LE+
Sbjct: 1051 ----EEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106
Query: 297 ANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAR 356
Q + ++ +S++ E ++ + KAE ++ E + +
Sbjct: 1107 ETSQK-NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165
Query: 357 EKAATEKIAKQLQHQLNE 374
A +++ ++
Sbjct: 1166 TTATQQELRGSDYKDDDD 1183
Score = 65.2 bits (159), Expect = 3e-11
Identities = 35/208 (16%), Positives = 76/208 (36%), Gaps = 9/208 (4%)
Query: 4 EKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIK 63
+ ++ +++ + N +K L SDL L E E + L+K+K
Sbjct: 975 QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034
Query: 64 ISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQ 123
+ + + + +E +EL K + S + + L +
Sbjct: 1035 NKHESMISELEVRLKKEEKS-RQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
Query: 124 D-----TVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGD---VEKQKRKIEGDL 175
+ + RL+ E +N ++ ++LE L++D+E + EKQKR + +L
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153
Query: 176 KLTQEAVADLERNKKELEQTIQRKDKEI 203
+ + + D ++ K+
Sbjct: 1154 EALKTELEDTLDTTATQQELRGSDYKDD 1181
Score = 55.6 bits (134), Expect = 3e-08
Identities = 34/175 (19%), Positives = 65/175 (37%)
Query: 384 RSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERA 443
+ D ++ +L+E E + +QL + K L +L+ L E R
Sbjct: 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV 916
Query: 444 TLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELE 503
L K + LE + + ++EEE E LQ + K + E E AR +
Sbjct: 917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976
Query: 504 ESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA 558
E + + ++ + ++ + + + E L+ + L + KNL
Sbjct: 977 EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031
Score = 31.7 bits (72), Expect = 0.77
Identities = 16/82 (19%), Positives = 34/82 (41%)
Query: 1 AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 60
A + + + +L +L++ N+ ++L SDL LE ++ ++
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143
Query: 61 KIKISLTTQLEDTKRLADEESS 82
K K L+ +LE K ++
Sbjct: 1144 KQKRDLSEELEALKTELEDTLD 1165
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 83.6 bits (207), Expect = 7e-17
Identities = 30/179 (16%), Positives = 73/179 (40%), Gaps = 8/179 (4%)
Query: 127 DRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEG---DVEKQKRKIEGDLKLTQEAVA 183
+L+ E + + + LE + L++ I++ + ++ +E E +
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966
Query: 184 DLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQ 243
+ E+ + + SL ++ + + + Q + K ++ ++ + E E Q
Sbjct: 967 SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---Q 1023
Query: 244 SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 302
++ ++Q L E EEL R+ + A + KK E +L DL + ++++
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIHDQ--AKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 80.2 bits (198), Expect = 8e-16
Identities = 29/203 (14%), Positives = 69/203 (33%), Gaps = 5/203 (2%)
Query: 140 FQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRK 199
+ + LK + ++ LK+ +V ++ LE I +
Sbjct: 874 VRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQL 933
Query: 200 DKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLAREL 259
++I + + + + ++ E + + A + L E+
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 260 EELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEM 319
+L + L + E K + E +L +L+E N ++ L ++ +D E+
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI 1053
Query: 320 GEQI-----DQLNKLKTKAEHER 337
E + ++ +L+ ER
Sbjct: 1054 TETMEKKLVEETKQLELDLNDER 1076
Score = 75.1 bits (185), Expect = 2e-14
Identities = 41/252 (16%), Positives = 91/252 (36%), Gaps = 6/252 (2%)
Query: 128 RLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLER 187
R Q DA L + N E ++K R + + A +
Sbjct: 834 RYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893
Query: 188 NKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAK 247
+R+ K++ +E + L + +I +LQ +I+E +E ++ +
Sbjct: 894 QCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953
Query: 248 AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLAN 307
E + +L ERL + + E++KLR++L + ++
Sbjct: 954 LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT----QTEKKT 1009
Query: 308 LRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQ 367
+ + + E + + +L + T + E+ + ++ + +K E KQ
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET--KQ 1067
Query: 368 LQHQLNEVQGKL 379
L+ LN+ + +
Sbjct: 1068 LELDLNDERLRY 1079
Score = 72.8 bits (179), Expect = 2e-13
Identities = 37/262 (14%), Positives = 95/262 (36%), Gaps = 20/262 (7%)
Query: 153 LKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLED 212
++ L+ + + + + L + ++++ + + A + +
Sbjct: 838 MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCY 897
Query: 213 EQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGA 272
+ + ++++K+L + VE ++ E + L R+++E + +
Sbjct: 898 RRMMA---KRELKKL----KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS---L 947
Query: 273 TSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTK 332
L E KLR D+E + E K + V + E+I +L K +
Sbjct: 948 LEKMNNLEITYSTETEKLRSDVERLRMSEEE-----AKNATNRVLSLQEEIAKLRKELHQ 1002
Query: 333 AEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAA 392
+ E+ + + +QL E ++ L+ + E+ ++ + + + +
Sbjct: 1003 TQTEKKTIEEWADKYKHETEQLVSE---LKEQNTLLKTEKEELNRRIHDQAKEIT--ETM 1057
Query: 393 KKKLSIENSDLLRQLEEAESQV 414
+KKL E L L + +
Sbjct: 1058 EKKLVEETKQLELDLNDERLRY 1079
Score = 72.4 bits (178), Expect = 2e-13
Identities = 40/259 (15%), Positives = 99/259 (38%), Gaps = 9/259 (3%)
Query: 187 RNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRA 246
+K + A L L + + + + +Q + V R +A
Sbjct: 830 VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889
Query: 247 KAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA 306
Q + ++L+ + +L+ E ++ +L+R ++E N +++S L
Sbjct: 890 IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949
Query: 307 NLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAK 366
+ +E + + +L+ +E E A N + + +L +E T+ K
Sbjct: 950 KMNNLEITYSTETEKLRSDVERLR-MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008
Query: 367 QLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTT 426
++ ++ + + ++ L + L E +L R++ + ++++ + K+
Sbjct: 1009 TIEEWADKYKHETEQLVSELKE---QNTLLKTEKEELNRRIHDQAKEITETMEKKLV--- 1062
Query: 427 QLEDTKRLADEEGRERATL 445
E+TK+L + ER
Sbjct: 1063 --EETKQLELDLNDERLRY 1079
Score = 52.4 bits (126), Expect = 3e-07
Identities = 37/208 (17%), Positives = 67/208 (32%), Gaps = 11/208 (5%)
Query: 354 LAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDL--------LR 405
L R K L+ + + K + + K + L+
Sbjct: 848 LLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELK 907
Query: 406 QLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEE 465
+L+ V + K+ I L ++ +R DE+ +E +LL K NLE E+L
Sbjct: 908 KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967
Query: 466 EAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKE 525
+ E + + A + + + E K+ E D E + E
Sbjct: 968 DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027
Query: 526 CRNYSTELFRLKGAYEEAQEQLEAVRRE 553
+ LK EE ++ +E
Sbjct: 1028 ---LKEQNTLLKTEKEELNRRIHDQAKE 1052
Score = 46.3 bits (110), Expect = 2e-05
Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 23/238 (9%)
Query: 325 QLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQG---KLDE 381
L + K + + + + R ++ + + Q ++ + KL
Sbjct: 852 YLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI 911
Query: 382 TNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRE 441
RS+ + L + L R+++E + L + LE T E+ R
Sbjct: 912 EARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKM----NNLEITYSTETEKLRS 967
Query: 442 RATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANA---DAQLWRTKYESEGVAR 498
L + N L+EE A L+++L + + W KY+ E
Sbjct: 968 DVERLRMSEEEAKNATNRVLSLQEEI---AKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024
Query: 499 AEELEESKSE--------ERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLE 548
EL+E + RR+ D A E+ + + + E +L+ + + + +
Sbjct: 1025 VSELKEQNTLLKTEKEELNRRIHDQAKEITETME--KKLVEETKQLELDLNDERLRYQ 1080
Score = 46.3 bits (110), Expect = 2e-05
Identities = 33/212 (15%), Positives = 72/212 (33%), Gaps = 56/212 (26%)
Query: 4 EKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIK 63
+K+ L++++ ++Q K+DE N+ L I S +L ++
Sbjct: 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLR------ 973
Query: 64 ISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQ 123
E+ + A + SL
Sbjct: 974 -----MSEEEAKNATNR-----------------VLSLQ--------------------- 990
Query: 124 DTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVA 183
+ + + +Q +KK +E+ K + E L ++++Q ++ +E
Sbjct: 991 ---EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK---TEKEELNR 1044
Query: 184 DLERNKKELEQTIQRK-DKEIASLTAKLEDEQ 214
+ KE+ +T+++K +E L L DE+
Sbjct: 1045 RIHDQAKEITETMEKKLVEETKQLELDLNDER 1076
Score = 38.9 bits (91), Expect = 0.005
Identities = 36/236 (15%), Positives = 81/236 (34%), Gaps = 30/236 (12%)
Query: 346 NTRAAADQLAREKAAT-------EKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSI 398
R A L R +AA + ++ + + L R + + L
Sbjct: 805 QARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLRE 864
Query: 399 ENSDLL-RQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRER---ATLLGKFR---- 450
S ++ + + ++V +K + Q + +A E ++ A + +++
Sbjct: 865 HKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHI 924
Query: 451 NLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSE-- 508
LE+ I ++ +++E+ + L +++ K S+ E L S+ E
Sbjct: 925 GLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSD----VERLRMSEEEAK 980
Query: 509 ---------ERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENK 555
+ + L EL +Q E + + K E+ +L+ K
Sbjct: 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.4 bits (174), Expect = 5e-13
Identities = 92/631 (14%), Positives = 203/631 (32%), Gaps = 139/631 (22%)
Query: 11 QHQLNEVQGKLDETNRS-LNDF-DAAKKKLSIEN-SDLLRQL---EEAE------SQVSQ 58
H ++ G+ + L+ F DA ++ D+ + + EE + VS
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 59 LSKIKISLTTQLEDT-KRL---ADEESSGWV-EELTKGSIEAITLKSLDLDVLNFTTENS 113
++ +L ++ E+ ++ + ++ + + S+ + +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ----PSMMTRMYIEQRDRL 119
Query: 114 HSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQEN------GGLKK-----------D 156
++ ++++ V RLQ R L + + +N G K
Sbjct: 120 YN-DNQVFAKYNVSRLQPYLKLRQALLELRP---AKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 157 IED-LEGDVE----KQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLE 211
++ ++ + K E L++ Q+ + ++ N I S+ A+L
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 212 D-------EQGL-----VGKNQKQIK--ELQARI------EELEEEVEAERQSRAKAEKQ 251
E L V +N K L +I +++ + + A + +
Sbjct: 236 RLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 252 RADLA-RELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRK 310
L E++ L L K + L R++ N + S +A +
Sbjct: 295 SMTLTPDEVKSL----------------LLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 311 KHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLA--REKAATEKIAKQL 368
+ +N K E + E R D+L+ A I L
Sbjct: 339 DGLA----TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA---HIPTIL 391
Query: 369 QHQL------NEVQGKLDE-TNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKI- 420
+ ++V +++ SL + + +SI + +L+ L +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--SIYLELKVKLENEYALHRSI 449
Query: 421 ----KISLTTQLED-TKRLADE----------EGRERATLLGKFRNLEHDIDNIREQLEE 465
I T +D D+ + E + FR + D + +++
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-- 507
Query: 466 EAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSE-ERRVDDLAAELDASQK 524
+ A S N QL Y+ + ++ + ER V+ + L ++
Sbjct: 508 RHDSTAWNASG-SILNTLQQL--KFYK-------PYICDNDPKYERLVNAILDFLPKIEE 557
Query: 525 EC-RNYSTELFRL------KGAYEEAQEQLE 548
+ T+L R+ + +EEA +Q++
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 48.7 bits (115), Expect = 4e-06
Identities = 40/280 (14%), Positives = 88/280 (31%), Gaps = 84/280 (30%)
Query: 6 IAKQLQHQLNEVQG-------KLDET-NRSLNDFDAAK-----KKLSI--ENSD----LL 46
IA+ ++ L KL SLN + A+ +LS+ ++ LL
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 47 RQL------EEAESQVSQLSKIKISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKS 100
+ + V++L K L ++ +E T I++ S
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHK------------YSLVEK----QPKEST------ISIPS 430
Query: 101 LDLDVLNFTTENS---HSFSISLY-----------SQDTVD--------------RLQQE 132
+ L+ L EN H + Y +D +
Sbjct: 431 IYLE-LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 133 EDARNQLF------QQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLE 186
+F +QK + + I + ++ K I + + V +
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 187 RNKKELEQTIQR-KDKEIASLTAKLEDEQGLVGKNQKQIK 225
++E+ + K ++ + A + +++ + + KQ++
Sbjct: 550 DFLPKIEENLICSKYTDLLRI-ALMAEDEAIFEEAHKQVQ 588
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 54.7 bits (132), Expect = 6e-08
Identities = 20/175 (11%), Positives = 64/175 (36%), Gaps = 8/175 (4%)
Query: 140 FQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRK 199
Q K +L + + +++ +E + EA+ + +K++ +Q+
Sbjct: 825 LQTKLRLIKREPFVAPAGLTPN-EIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKY 883
Query: 200 DKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLAREL 259
++ + KLE+ E I ++ +++ + + +L
Sbjct: 884 NRILK----KLENWATTK-SVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDL 938
Query: 260 EELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHND 314
+ +L E + EL ++++ ++ ++ + +++TL ++
Sbjct: 939 LSILAQLTEL--NYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQK 991
Score = 48.5 bits (116), Expect = 5e-06
Identities = 16/124 (12%), Positives = 40/124 (32%), Gaps = 11/124 (8%)
Query: 129 LQQEEDARNQL--FQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLE 186
LQ+ +L + K + + I ++ ++ + L ++ +DL
Sbjct: 880 LQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLL 939
Query: 187 RNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRA 246
+L + E+ + +Q +++ E + + AE +
Sbjct: 940 SILAQLTELNYNGVPEL---------TERKDTFFAQQWTGVKSSAETYKNTLLAELERLQ 990
Query: 247 KAEK 250
K E
Sbjct: 991 KIED 994
Score = 36.2 bits (84), Expect = 0.030
Identities = 26/202 (12%), Positives = 62/202 (30%), Gaps = 13/202 (6%)
Query: 236 EEVEAERQSRAKAEKQR-ADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDL 294
++ E + + +E + + + L +R A E++ A +
Sbjct: 804 KKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHA 863
Query: 295 EEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQL 354
E I+ + +KK + + + +L T + + T A
Sbjct: 864 EALRIELK-----RQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLK 918
Query: 355 AREKAATEKIA--KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAES 412
E E + Q L + +L E N + + +++ +Q +S
Sbjct: 919 NLEAFDGECQSLEGQSNSDLLSILAQLTELNYNG-----VPELTERKDTFFAQQWTGVKS 973
Query: 413 QVSQLSKIKISLTTQLEDTKRL 434
++ +L+ + L
Sbjct: 974 SAETYKNTLLAELERLQKIEDL 995
Score = 35.4 bits (82), Expect = 0.060
Identities = 25/230 (10%), Positives = 68/230 (29%), Gaps = 15/230 (6%)
Query: 328 KLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLN 387
+ ++ ++ + + A + EK + +L+ N +Q KL R
Sbjct: 778 QASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKR--- 834
Query: 388 DFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLG 447
+ + +++ E + ++ + + L + R L
Sbjct: 835 --EPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKL-- 890
Query: 448 KFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKS 507
+ + + + + L + + Q + S+ ++ +L E
Sbjct: 891 ENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELN- 949
Query: 508 EERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 557
V +L D + + +K + E + L A + +
Sbjct: 950 -YNGVPELTERKDTFFAQ------QWTGVKSSAETYKNTLLAELERLQKI 992
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 52.7 bits (127), Expect = 3e-07
Identities = 22/196 (11%), Positives = 72/196 (36%), Gaps = 25/196 (12%)
Query: 140 FQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRK 199
+++ G +I+ +EK +++ L++ + + ++ + +++
Sbjct: 839 LIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKL 898
Query: 200 DKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLAREL 259
+ + + L + I +QA+++ LE + + ++ + +DL L
Sbjct: 899 ENWATTKSVYLGSN-----ETGDSITAVQAKLKNLEAF---DGECQSLEGQSNSDLLSIL 950
Query: 260 EELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEM 319
+L E EL ++++ ++ ++ + +++TL ++
Sbjct: 951 AQLTELNYN------GVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQ------ 998
Query: 320 GEQIDQLNKLKTKAEH 335
++ L H
Sbjct: 999 -----KIEDLHHHHHH 1009
Score = 42.3 bits (100), Expect = 4e-04
Identities = 29/222 (13%), Positives = 68/222 (30%), Gaps = 9/222 (4%)
Query: 219 KNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIE 278
+ + ++ IE ++ + A ++ + + + ELE + L+ +
Sbjct: 786 QASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPF 845
Query: 279 LNKKRE--AEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEH- 335
+ E+ LE+A +H L K+ + + L KL+ A
Sbjct: 846 VAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTK 905
Query: 336 ----ERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDA 391
N + +A L + + Q L + +L E N N
Sbjct: 906 SVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELN--YNGVPE 963
Query: 392 AKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKR 433
++ + ++ + ++ ++ED
Sbjct: 964 LTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHH 1005
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 7e-07
Identities = 81/539 (15%), Positives = 148/539 (27%), Gaps = 193/539 (35%)
Query: 93 IEAITLKSLDLDVLNFTTENS--HSFSI--SLYSQDTVDRLQQEEDARNQLFQQKKKLEQ 148
++A + + L L + S H + + + +LQ++ F K L +
Sbjct: 1 MDAYSTRPLTL------SHGSLEHVLLVPTASFF--IASQLQEQ-------FN--KILPE 43
Query: 149 ENGGLKKDIED---LE------GDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRK 199
G D E E G V + + L E E
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVE--PSKVGQFDQV---LNLCLTEFENCYLE- 97
Query: 200 DKEIASLTAKL-EDEQGLVGKNQKQIKE-LQARIEELEEEVEAERQS---RAKAEKQRAD 254
+I +L AKL ++ + K ++ IK + ARI + + + S RA + A
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARI-MAKRPFDKKSNSALFRA-VGEGNAQ 155
Query: 255 LA-------------RELEELGERLEEAGGATSAQI--ELNKKREAEMSKLRRDLEEANI 299
L EL +L + T + +L K +S+L R +A
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQ--------TYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 300 QHEST------LANLRKKHND------AVS---------------------EMGEQIDQL 326
L N + +S GE L
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 327 NKL----------------KTKAEHERNA-------------AHNETNNTRAAADQLARE 357
+ + + NT L
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 358 KAATEKIA------KQL-QHQLNEVQGKLDETNRSLNDFDAAKKKLSIE--NS------- 401
E + L Q Q+ Q +++TN L A K++ I N
Sbjct: 328 LENNEGVPSPMLSISNLTQEQV---QDYVNKTNSHL----PAGKQVEISLVNGAKNLVVS 380
Query: 402 ----DL------LRQLEEAESQVSQLSKI-----KISLTTQ------------LEDTKRL 434
L LR+ +A S + Q S+I K+ + + L L
Sbjct: 381 GPPQSLYGLNLTLRKA-KAPSGLDQ-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 435 ADEEGRERATLLGKFRNLE------HDIDNIREQLEEEAEGKADLQRQLSKANADAQLW 487
+++ + + ++++ D ++R +E + + + W
Sbjct: 439 INKD-LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE---RIVDCIIRLPVK---W 490
Score = 45.0 bits (106), Expect = 7e-05
Identities = 49/294 (16%), Positives = 83/294 (28%), Gaps = 105/294 (35%)
Query: 77 ADE---ESSGWVEELTKGSIEAITL---KSLDLDVLNFTTENSHSFSI-SLYSQDTVDRL 129
AD ++ G+ SI I + +L ++F E I YS + +
Sbjct: 1649 ADNHFKDTYGF-------SILDIVINNPVNL---TIHFGGEKGKR--IRENYSAMIFETI 1696
Query: 130 QQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLT---QEA----- 181
D + + +K ++ N + +G L T Q A
Sbjct: 1697 ---VDGK---LKTEKIFKEINEHSTSYT--FRSE--------KGLLSATQFTQPALTLME 1740
Query: 182 VADLERNKKELEQTIQRKDKEIA--SL---TAKLEDEQGLVGKNQKQIKELQARIEELEE 236
A E K + + D A SL A L A + +E
Sbjct: 1741 KAAFEDLKSK---GLIPADATFAGHSLGEYAA-------LAS---------LADVMSIES 1781
Query: 237 EVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREA---EMSKLRRD 293
VE R ++ R +E G + I +N R A L+
Sbjct: 1782 LVEVVFY-RGMT----------MQVAVPR-DELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 294 LEEANIQHESTL--ANLRKKHNDAVSEMGEQI-------------DQLNKLKTK 332
+E + + N +N +Q + LN +K +
Sbjct: 1830 VERVGKRTGWLVEIVN----YNVE----NQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Score = 38.9 bits (90), Expect = 0.005
Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 59/159 (37%)
Query: 14 LNEVQGKLDETNRSLNDFDAAKKKLSIE--NS-----------DL------LRQLEEAES 54
+VQ +++TN L A K++ I N L LR+ +A S
Sbjct: 346 QEQVQDYVNKTNSHL----PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA-KAPS 400
Query: 55 QVSQLSKI-----KISLTTQ------------LEDTKRLADEESSGWVEELTKGSIEAIT 97
+ Q S+I K+ + + L L + ++L K ++
Sbjct: 401 GLDQ-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN-------KDLVKNNVS-FN 451
Query: 98 LKSLDLDVLNFTTEN-----SHSFSI--SLYSQDTVDRL 129
K + + V + T + S SI + +
Sbjct: 452 AKDIQIPV--YDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 38.1 bits (88), Expect = 0.009
Identities = 55/390 (14%), Positives = 111/390 (28%), Gaps = 124/390 (31%)
Query: 18 QGK----LDETNRSL-NDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLED 72
QG +E R L + L +++ L +L ++ +++ LE+
Sbjct: 163 QGNTDDYFEEL-RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 73 TKRLADEE--SSGWVEELTKGSIEAITLKSL-----DLDVLNFTTEN--SHSFSISLYSQ 123
D++ S + S I + L +L FT S+ + +SQ
Sbjct: 222 PSNTPDKDYLLSIPI------SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 124 DTV------------DRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKI 171
V A LF G++
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFI---------GVR----------------- 309
Query: 172 EGDLKLTQEAVADLERNKKELEQTIQRKDKEIAS--LTAKLEDEQGLVGKNQKQIKELQA 229
EA + LE +++ ++ + S L + Q+Q +Q
Sbjct: 310 ------CYEAYPNTSLPPSILEDSLEN-NEGVPSPML--------SISNLTQEQ---VQD 351
Query: 230 RIEELEEEVEAERQ---SRAKAEKQR--ADLARELEELGERLEEA---GGATSAQIELNK 281
+ + + A +Q S K + + L L L +A G ++I ++
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 282 KR--------------------EAEMSKLRRDLEEANIQ-HESTLA----------NLRK 310
++ A + +DL + N+ + + +LR
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPAS-DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 311 KHNDAVSEMGEQI--DQLN---KLKTKAEH 335
+ + I + + KA H
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATH 500
Score = 37.7 bits (87), Expect = 0.011
Identities = 35/180 (19%), Positives = 56/180 (31%), Gaps = 57/180 (31%)
Query: 397 SIENSDLLRQLEEAESQVSQLSKIKISLTTQL-EDTKRLA-DEEGRERATLLGKFRNLEH 454
S+E+ L+ + S+++ L E T+ A D+E A L+GKF L +
Sbjct: 15 SLEHVLLV-----PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF--LGY 67
Query: 455 DIDNIREQLEEEAEGKAD--LQRQLSKANADAQLWRTKYESEGVARAEELEES--KSEER 510
+ +E G+ D L L E E + +
Sbjct: 68 ----VSSLVEPSKVGQFDQVLNLCL----------------------TEFENCYLEGND- 100
Query: 511 RVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQ-------------LEAVRRENKNL 557
+ LAA+L + EL + Y A+ AV N L
Sbjct: 101 -IHALAAKLLQENDTTLVKTKELIK---NYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Score = 35.8 bits (82), Expect = 0.049
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 22/116 (18%)
Query: 39 SIENSDLLRQLEEAESQVSQLSKIKISLTTQL-EDTKRLA--DEESS---------GWV- 85
S+E+ L+ + S+++ L E T+ A DE ++ G+V
Sbjct: 15 SLEHVLLV-----PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 86 ---EELTKGSIEAITLKSLDLDVLNFTTENS-HSFSISLYSQDTVDRLQQEEDARN 137
E G + + L + N H+ + L ++ ++ +E +N
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 51.1 bits (122), Expect = 1e-06
Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 17/214 (7%)
Query: 175 LKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEEL 234
L + V + + +LE+ + + KL D + V Q + + ++
Sbjct: 1898 LDFINQVVLLINEKRDQLEEEQLHLNIGL----KKLRDTEAQVKDLQVSLAQKNRELDVK 1953
Query: 235 EEEVEAE----RQSRAKAEKQRADLARELEELGERLEEAGG-ATSAQIELNKKREAEMSK 289
E+ + Q + AE ++ D +L R +E A +L K
Sbjct: 1954 NEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAE--PTGP 2011
Query: 290 LRRDLEEANIQHESTLANLRKKHN------DAVSEMGEQIDQLNKLKTKAEHERNAAHNE 343
LR ++E+ + +++ E+ L + + + E + N+
Sbjct: 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071
Query: 344 TNNTRAAADQLAREKAATEKIAKQLQHQLNEVQG 377
+ + A D L E+ E+ ++ Q++ V G
Sbjct: 2072 VDRSIALLDNLNSERGRWEQQSENFNTQMSTVVG 2105
Score = 39.5 bits (92), Expect = 0.004
Identities = 28/228 (12%), Positives = 83/228 (36%), Gaps = 23/228 (10%)
Query: 11 QHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQL 70
+H L+ + + N + + + L+I L++L + E+QV L +L
Sbjct: 1895 RHYLDFINQVVLLINEKRDQLEEEQLHLNIG----LKKLRDTEAQVKDLQVSLAQKNREL 1950
Query: 71 EDTKRLADEESSGWVEELTKGSIEAITLKSL-DLDVLNFTTENSHSFSISLYSQDTVDRL 129
+ A+++ ++++ + A + + N + + +++
Sbjct: 1951 DVKNEQANQK----LKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006
Query: 130 QQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNK 189
+ R ++ Q + + + + + +E + +E A L R
Sbjct: 2007 EPTGPLREEVEQLENAANELKLKQDEIVATI--------TALEKSIATYKEEYATLIRET 2058
Query: 190 KELE---QTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEEL 234
++++ ++ K +L L E+ G+ ++Q + ++ +
Sbjct: 2059 EQIKTESSKVKNKVDRSIALLDNLNSER---GRWEQQSENFNTQMSTV 2103
Score = 37.2 bits (86), Expect = 0.015
Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 15/183 (8%)
Query: 369 QHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQL 428
+H L+ + + N + + + L+I L++L + E+QV L +L
Sbjct: 1895 RHYLDFINQVVLLINEKRDQLEEEQLHLNIG----LKKLRDTEAQVKDLQVSLAQKNREL 1950
Query: 429 EDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWR 488
+ A+++ ++ +I + + + + + K A A L +
Sbjct: 1951 DVKNEQANQKLKQMVQ-----DQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEK 2005
Query: 489 TKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLE 548
+ E+LE + +E + + D + K Y + E
Sbjct: 2006 AEPTGPLREEVEQLENAANELKL------KQDEIVATITALEKSIATYKEEYATLIRETE 2059
Query: 549 AVR 551
++
Sbjct: 2060 QIK 2062
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 49.9 bits (118), Expect = 1e-06
Identities = 39/227 (17%), Positives = 95/227 (41%), Gaps = 4/227 (1%)
Query: 166 KQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIK 225
K+ L+L A E+ ++E + +++ +E+ A L + Q ++ + ++Q++
Sbjct: 314 LAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLR 373
Query: 226 ELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREA 285
+LQA EELE+ + + E+ + A E ++L + + S + + +++
Sbjct: 374 QLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDS 433
Query: 286 EMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETN 345
E +L+ ++E+A + + A L + E+ D ++ + +
Sbjct: 434 ETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGGGDLA 493
Query: 346 NTRAAADQLAREKAATEKIAKQLQHQLNEVQGKL----DETNRSLND 388
++ + ++L +QL ++ L DET + D
Sbjct: 494 RGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDETKETAMD 540
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 46.8 bits (111), Expect = 1e-05
Identities = 14/104 (13%), Positives = 36/104 (34%)
Query: 136 RNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQT 195
+ L + K++++ L+ + +E + K+ I+ +
Sbjct: 26 ADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLK 85
Query: 196 IQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVE 239
++ +EI A + + Q+ +I L+E+V
Sbjct: 86 SRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVA 129
Score = 32.6 bits (74), Expect = 0.36
Identities = 12/105 (11%), Positives = 33/105 (31%)
Query: 287 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNN 346
+S + +++ E L + K ++ + N ++ + +AA ++
Sbjct: 29 LSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRK 88
Query: 347 TRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDA 391
+ + + LQ N K+ + +A
Sbjct: 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 42.8 bits (101), Expect = 2e-04
Identities = 26/207 (12%), Positives = 63/207 (30%), Gaps = 17/207 (8%)
Query: 123 QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGD-------- 174
+D + R ++ + + K + + R I +
Sbjct: 63 KDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKID 122
Query: 175 -----LKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQA 229
K + + K + + D E + A+ E + + + +
Sbjct: 123 GKTVSYKDYSIFLENENILIKAKNFLVFQGDVE--QIAAQSPVELSRMFEEVSGSIQYKK 180
Query: 230 RIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELN--KKREAEM 287
EEL+E++E +S ++ K R + EL+ E + + R +
Sbjct: 181 EYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVI 240
Query: 288 SKLRRDLEEANIQHESTLANLRKKHND 314
+ L+ + + ++KK +
Sbjct: 241 NNETEQLKAEEKKILNQFLKIKKKRKE 267
Score = 31.6 bits (72), Expect = 0.63
Identities = 16/138 (11%), Positives = 53/138 (38%), Gaps = 7/138 (5%)
Query: 67 TTQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTV 126
+ LE+ L ++ + +G +E I +++ E S S ++
Sbjct: 132 SIFLENENILIKAKNF----LVFQGDVEQI-AAQSPVELSRMFEEVSGSIQYKKEYEELK 186
Query: 127 DRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEK--QKRKIEGDLKLTQEAVAD 184
+++++ + + + ++++ E K ++ + + + EG ++
Sbjct: 187 EKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQ 246
Query: 185 LERNKKELEQTIQRKDKE 202
L+ +K++ + K+
Sbjct: 247 LKAEEKKILNQFLKIKKK 264
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 41.7 bits (97), Expect = 6e-04
Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 5/143 (3%)
Query: 165 EKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQI 224
++ +L QEA LER K + ++ KE+ L A +
Sbjct: 668 SQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVE----STGNAK 723
Query: 225 KELQARIEELEEEVEAE-RQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKR 283
E ++R E E E Q++ KA+ + ELE + + E AQ+EL +
Sbjct: 724 AEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSK 783
Query: 284 EAEMSKLRRDLEEANIQHESTLA 306
+++ + + +
Sbjct: 784 AQQLANVEAKKFKEMTEALGPGT 806
Score = 37.1 bits (85), Expect = 0.017
Identities = 31/220 (14%), Positives = 75/220 (34%), Gaps = 5/220 (2%)
Query: 86 EELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKK 145
+ G++ + S+ Q T D LQ+ ++ ++
Sbjct: 611 DTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQE 670
Query: 146 LEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIAS 205
++ + + E G +E+QK + + + ++ + +LE +E T K + +
Sbjct: 671 AAAKHEAQRLEQE-ARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESR 729
Query: 206 LTAKLEDEQGLVG----KNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEE 261
A + +G V K Q E +A +E +++ E E + A++L
Sbjct: 730 AEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLAN 789
Query: 262 LGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQH 301
+ + + + A + L+ ++
Sbjct: 790 VEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKS 829
Score = 30.2 bits (67), Expect = 2.5
Identities = 29/226 (12%), Positives = 75/226 (33%), Gaps = 2/226 (0%)
Query: 301 HESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAA 360
H+++ +R D K + + + ++ ++
Sbjct: 592 HKNSARIIRMAVFGFEMSEDTGPDGTLLPKAR-DQAVFPQNGLVVSSVDVQSVEPVDQRT 650
Query: 361 TEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKI 420
+ + + +Q + + + + + +E +L Q E +++ L
Sbjct: 651 RDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELE 710
Query: 421 KISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKA 480
+S+ + + E E A + G+ L+ + +E EAE + + + +
Sbjct: 711 AMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMEL 770
Query: 481 N-ADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKE 525
A AQL +++ +A E + + E +L + E
Sbjct: 771 IYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPE 816
Score = 29.0 bits (64), Expect = 4.5
Identities = 17/127 (13%), Positives = 40/127 (31%), Gaps = 2/127 (1%)
Query: 427 QLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQL 486
+ D + + + + + E + ++LE+EA + L+RQ ++A+
Sbjct: 644 EPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEA--RGRLERQKILDQSEAEK 701
Query: 487 WRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQ 546
R + ++ A + + L E E+
Sbjct: 702 ARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELER 761
Query: 547 LEAVRRE 553
++ VR
Sbjct: 762 VKKVREM 768
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 41.1 bits (95), Expect = 0.001
Identities = 47/319 (14%), Positives = 112/319 (35%), Gaps = 8/319 (2%)
Query: 165 EKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQI 224
+++ + + +EA L +D ++ + + V Q I
Sbjct: 378 QRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSV-IEQGGI 436
Query: 225 KELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKRE 284
+ + I+EL E ++ R+ ++ + + +L + +E T + EL K
Sbjct: 437 QTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSN-ELYKPLR 495
Query: 285 AEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNK----LKTKAEHERNAA 340
AE + R L++A Q + + + H D + + + +LN + +
Sbjct: 496 AEGTNFRTVLDKAV-QADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEV 554
Query: 341 HNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIEN 400
N + + D++ +E+ E K + + + +N+ + +L
Sbjct: 555 VNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVY 614
Query: 401 SDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIR 460
L +++E+ + L K + K+ + E R +L + +
Sbjct: 615 GGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQS-NNEANLREEVLKNLATAYDNFVELV 673
Query: 461 EQLEEEAEGKADLQRQLSK 479
L+E + +L L +
Sbjct: 674 ANLKEGTKFYNELTEILVR 692
Score = 38.4 bits (88), Expect = 0.006
Identities = 31/289 (10%), Positives = 83/289 (28%), Gaps = 5/289 (1%)
Query: 4 EKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIK 63
+ + Q+ E + SLN A + + + + + +
Sbjct: 381 ADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVD 440
Query: 64 ISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQ 123
+ +L + + E + L + L++ + T N +
Sbjct: 441 QLIK-ELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGT 499
Query: 124 DTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVA 183
+ L + A Q+ + + L K +L + +
Sbjct: 500 NFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLK 559
Query: 184 DLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQ 243
L N E+++ + + ++ S+ + + I E + EL+
Sbjct: 560 SLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTT 619
Query: 244 SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 292
++ K++ L + ++ + + + + RE + L
Sbjct: 620 KVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEA----NLREEVLKNLAT 664
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 40.6 bits (96), Expect = 0.001
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 14/80 (17%)
Query: 184 DLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQ 243
D+E ++ E+ ++ KL G K A +E VEAE
Sbjct: 797 DVEEWRRRQEKRLKELLALAERSQRKLASP-GFREK---------AP----KEVVEAEEA 842
Query: 244 SRAKAEKQRADLARELEELG 263
+ +Q + L ++G
Sbjct: 843 RLKENLEQAERIREALSQIG 862
Score = 30.6 bits (70), Expect = 1.6
Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 146 LEQENGGLKKDIEDLEGDVEKQKRKI--EGDLKLTQEAVADLERNK-KELEQTIQRKDKE 202
+E+ +K +++L E+ +RK+ G + + V + E + KE + +R +
Sbjct: 798 VEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREA 857
Query: 203 IASL 206
++ +
Sbjct: 858 LSQI 861
Score = 29.8 bits (68), Expect = 2.6
Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 33/129 (25%)
Query: 198 RKDKEIA---SLTAKLEDEQGLVGKNQKQIKELQARIEELEEE----------------- 237
+ + + + LE E V +N + + L +R + L E
Sbjct: 733 KAEAGLPPAQEVRVYLEGETAPVEENLEVFRFL-SRADLLPERPAKALVKAMPRVTARMP 791
Query: 238 ------VEAERQSRAKAEKQRADLARELEELGERLEEAG---GATSAQIELNKKREAEMS 288
VE R + EK+ +L E +L G A +E + R E
Sbjct: 792 LEGLLDVEEWR---RRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENL 848
Query: 289 KLRRDLEEA 297
+ + EA
Sbjct: 849 EQAERIREA 857
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.0 bits (87), Expect = 0.002
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 13/38 (34%)
Query: 165 EKQK-RKIEGDLKL----TQEAVADLERNKKELEQTIQ 197
EKQ +K++ LKL + A+A ++ T++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA--------IKATME 47
Score = 29.9 bits (66), Expect = 1.1
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 32/60 (53%)
Query: 221 QKQ-IKELQARIEELEEEVEAERQSRAKAEKQRA-DLARELEELGERLEEAGGATSAQIE 278
+KQ +K+LQA + K A D A L A A +E
Sbjct: 18 EKQALKKLQASL------------------KLYADDSAPAL------------AIKATME 47
Score = 28.0 bits (61), Expect = 5.3
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 9/31 (29%)
Query: 141 QQKKKLEQENGGLKKDIED------LEGDVE 165
Q KKL+ LK +D ++ +E
Sbjct: 20 QALKKLQ---ASLKLYADDSAPALAIKATME 47
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 38.8 bits (90), Expect = 0.004
Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 24/152 (15%)
Query: 225 KELQARIEELEEEVEAERQSRAKAEKQRADLARELEEL--------------GERLEEAG 270
+ +QA+++ELE+E E +K + +ELEE+ ++ +
Sbjct: 93 RGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILN 152
Query: 271 GATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK 330
A ++ ++ + + +M +L L Q E V E ++ID LK
Sbjct: 153 KAVTSYNKILTEEDLQMRRLATAL-----QKEIGERT--HAETVMVKEYRDKIDA---LK 202
Query: 331 TKAEHERNAAHNETNNTRAAADQLAREKAATE 362
E ER+ E A E A+ E
Sbjct: 203 NAIEVERDGMQEEAIQEIAGMTADVLEAASEE 234
Score = 34.5 bits (79), Expect = 0.093
Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 6/120 (5%)
Query: 176 KLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELE 235
+ Q + +LE ++ ++ DK +LE+ + E + + + L
Sbjct: 93 RGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILN 152
Query: 236 EEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLE 295
+ V + + + + Q LA L+ +E G T A+ + K+ ++ L+ +E
Sbjct: 153 KAVTSYNKILTEEDLQMRRLATALQ------KEIGERTHAETVMVKEYRDKIDALKNAIE 206
Score = 33.8 bits (77), Expect = 0.15
Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 3/137 (2%)
Query: 374 EVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKR 433
V G +E L+ ++ + + +L + ++ KIK +LE+
Sbjct: 76 NVLGSGEEIPDPLS---PGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYN 132
Query: 434 LADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYES 493
+ E +F L + + + L EE L L K + T
Sbjct: 133 FMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVK 192
Query: 494 EGVARAEELEESKSEER 510
E + + L+ + ER
Sbjct: 193 EYRDKIDALKNAIEVER 209
Score = 32.6 bits (74), Expect = 0.32
Identities = 19/134 (14%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
Query: 152 GLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKD---KEIASLTA 208
G++ +++LE + + +++ + K+ ++ +LE + + K+ L
Sbjct: 94 GIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNK 153
Query: 209 KLEDEQGLVGKNQKQIKELQARIE-ELEEEVEAERQS----RAKAEKQRADLARELEELG 263
+ ++ + Q++ L ++ E+ E AE R K + + + E + +
Sbjct: 154 AVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQ 213
Query: 264 ERLEEAGGATSAQI 277
E + +A +
Sbjct: 214 EEAIQEIAGMTADV 227
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 38.3 bits (88), Expect = 0.005
Identities = 14/108 (12%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 375 VQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRL 434
++G +DE ++ + + + +L + + ++T +
Sbjct: 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQ 113
Query: 435 ADEEGRERATLL-----GKFRNLEHDIDNIREQLEEEAEGKADLQRQL 477
+E+ R R +L + + + N+R+QL + + D+ ++
Sbjct: 114 INEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKI 161
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 38.3 bits (88), Expect = 0.007
Identities = 33/381 (8%), Positives = 114/381 (29%), Gaps = 16/381 (4%)
Query: 8 KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLT 67
++L H + + K + +A ++ E + L +++ + +
Sbjct: 366 ERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATL-SEIKALLKKHEAFESDLAAHQ 424
Query: 68 TQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVD 127
++E +A E + + + + ++ T + + + +T+D
Sbjct: 425 DRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETID 484
Query: 128 RLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLER 187
+L E R F + I +++ E +A + +
Sbjct: 485 QLYLEYAKRAAPFNNWME-GAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQA 543
Query: 188 NKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAK 247
+ + ++ + + + ++ + ++ + E + +
Sbjct: 544 ILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQ 603
Query: 248 AEKQRADLARELEELGERLEEA-----------GGATSAQIELNKKREAEMSKLRRDLEE 296
E+ R + +G ++ G Q+ ++ E + + +++
Sbjct: 604 NERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQ 663
Query: 297 ANIQHESTLANLRKKHNDA---VSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQ 353
H+ L + + + +QL + +E + + +Q
Sbjct: 664 LEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQ 723
Query: 354 LAREKAATEKIAKQLQHQLNE 374
+ +A+ ++ ++
Sbjct: 724 MNEFRASFNHFDRKKTGMMDC 744
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 37.5 bits (86), Expect = 0.012
Identities = 24/221 (10%), Positives = 73/221 (33%), Gaps = 15/221 (6%)
Query: 220 NQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIEL 279
N + + + LE+ ++ R+ E++ + ++ + Q +L
Sbjct: 4 NHPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQ-DL 62
Query: 280 NKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNA 339
N ++ + + LE+ + ++ + +S M L + R
Sbjct: 63 NGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRR-- 120
Query: 340 AHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIE 399
Q+A +L++ + + +T + + + ++K+S +
Sbjct: 121 ------------QQIACIGGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYK 168
Query: 400 NSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGR 440
+++ E ++ +L + + +E + R
Sbjct: 169 GDPIVQHRPMLEERIVELFRNLMKSAFVVERQPCMPMHPDR 209
Score = 35.2 bits (80), Expect = 0.057
Identities = 30/182 (16%), Positives = 63/182 (34%), Gaps = 10/182 (5%)
Query: 137 NQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIE------GDLKLTQEAVADLERNKK 190
+ ++++ LEQ ++K ++DLE ++ + + LK + N+
Sbjct: 9 AVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQS 68
Query: 191 ELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEK 250
Q +Q+ ++ + +L + ++ +Q + + E RQ A
Sbjct: 69 VTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIACIGG 128
Query: 251 QRADLARELEELGERLEEAGGATSAQI----ELNKKREAEMSKLRRDLEEANIQHESTLA 306
LE L E+ T QI EL +K + + + +
Sbjct: 129 PPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDPIVQHRPMLEERIVELFR 188
Query: 307 NL 308
NL
Sbjct: 189 NL 190
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 37.2 bits (85), Expect = 0.017
Identities = 46/333 (13%), Positives = 111/333 (33%), Gaps = 20/333 (6%)
Query: 176 KLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELE 235
KLT + ++ E NK + K+ +L + N ++K+ Q
Sbjct: 564 KLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQ------- 616
Query: 236 EEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLE 295
+++E + R EK+ ++E A S + E+ E ++
Sbjct: 617 KDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANR------ 670
Query: 296 EANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLA 355
++ + E+ +++++++K + N N + A++
Sbjct: 671 ------DARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETL 724
Query: 356 REKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVS 415
+ + K +++V+ N N + K++ SDL +++
Sbjct: 725 KALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQK 784
Query: 416 QLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQR 475
K+ +L + K + D E+ K + E ++ + ++L +
Sbjct: 785 VTDKVD-NLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNTGKNSELYQ 843
Query: 476 QLSKANADAQLWRTKYESEGVARAEELEESKSE 508
+ + + E A A+ + K E
Sbjct: 844 SVKNSVNKTLVGNGLSGIEATALAKNFSDIKKE 876
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 36.4 bits (85), Expect = 0.021
Identities = 31/168 (18%), Positives = 56/168 (33%), Gaps = 19/168 (11%)
Query: 106 LNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVE 165
L F+ +N + S+ + L + + + +
Sbjct: 336 LKFSLDNLQA------SKIARENLINKLSYFYESLDPVDLNTLNKDLKNFGFSVEKEYYD 389
Query: 166 KQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIK 225
KI DL + +A L E+ ++ L ++ L ++ +K
Sbjct: 390 SFVEKISFDLN-VAQGLALLW----EIIKSDNLSFVSKLRLAFIFDEIMSL-NLREEILK 443
Query: 226 ELQARIEELEEEVEA---ERQSRAKAEKQ--RADLAR-ELEELGERLE 267
LQ ++E ++A ER+ AK EK RAD R + G L
Sbjct: 444 NLQNHDVVIDENMKALIEERR-IAKCEKNFKRADEIRDFFAKKGFVLV 490
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 36.1 bits (83), Expect = 0.025
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 12/106 (11%)
Query: 163 DVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQK 222
+++ K E +K + DL+ + T + + + KL K QK
Sbjct: 86 ELQTTLLKQEKTVK---PVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLV-------KTQK 135
Query: 223 QIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEE 268
Q K+ + E E+E + ++ L L ++
Sbjct: 136 QRKDNDIILSEYNTEMELHYNY--IKDNLDNNIPSSLRVLRAVIDS 179
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid
synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A*
3tdc_A*
Length = 793
Score = 36.3 bits (84), Expect = 0.026
Identities = 39/235 (16%), Positives = 80/235 (34%), Gaps = 26/235 (11%)
Query: 189 KKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKA 248
KK+L +TI+R D L +L + ++ +L+AR + L
Sbjct: 576 KKDLVKTIRRLDPISKKLVEQLGVSELSDTDRKELEGQLKAREDLLLPMYHQ-------V 628
Query: 249 EKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANL 308
ADL + E+ G +E R +LRR L E+ ++ E A
Sbjct: 629 ALHFADLHDTAGRMLEK-----GVIYDILEWKTARSFLYWRLRRLLLESQVKQEVLRACP 683
Query: 309 RKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQL 368
H L + + E A +N + L A++ + +
Sbjct: 684 ELSH-------MHVQSMLRRWFVETEGAVKAY--LWDNNQTVVQWLEAHGQASDVLHSTI 734
Query: 369 QHQLNEVQGKLDETNRSLNDFDAAKKKLSIEN-SDLLRQL--EEAESQVSQLSKI 420
+ + + + D +++ +L++++ + + + E + LS
Sbjct: 735 RENITCL--RRDSALKTIQGLVQENPELAMDSLVYVSQHISPAERAQVIHLLSTT 787
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 36.0 bits (84), Expect = 0.026
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 158 EDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQ-----RKD--KEIASLTAKL 210
E+ E ++ E + + + L+ + + I R EI K
Sbjct: 9 ENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKG 68
Query: 211 EDEQGL---VGKNQKQIKELQARIEELEEEVEA 240
E L + K+I EL+ +EEL+++++
Sbjct: 69 EPVDELLAKSREIVKRIGELENEVEELKKKIDY 101
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A
{Enterobacteria phage HK97} PDB: 3qpr_A
Length = 385
Score = 35.2 bits (80), Expect = 0.044
Identities = 12/104 (11%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 222 KQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNK 281
++ +Q IEE ++++ ++ + ++++L+ +++E + ++
Sbjct: 2 SELALIQKAIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDLMKVQEELTKSGTRLF--- 58
Query: 282 KREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQ 325
E +++ + E E L K + G +
Sbjct: 59 DLEQKLASGAENPGEKKSFSERAAEELIKSWDGKQGTFGAKTFN 102
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 35.3 bits (80), Expect = 0.050
Identities = 26/259 (10%), Positives = 83/259 (32%), Gaps = 3/259 (1%)
Query: 118 ISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKL 177
I+ Y Q ++Q ++ +L + E+E + + D QK K
Sbjct: 332 IAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKK 391
Query: 178 TQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEE 237
+ + + + + L +++ + + +++ E
Sbjct: 392 RDDFCKQNQEASSDRCSGL--LQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYE 449
Query: 238 VEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEA 297
+ + + + + + ++ +IE+ + + + L E
Sbjct: 450 EPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEM 509
Query: 298 NIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLARE 357
++E + + + + + ++ E+++ + E ER A + + +E
Sbjct: 510 QRKNEQMMEQKERSYQEHLKQLTEKMENDRV-QLLKEQERTLALKLQEQEQLLKEGFQKE 568
Query: 358 KAATEKIAKQLQHQLNEVQ 376
+ + LQ ++ +
Sbjct: 569 SRIMKNEIQDLQTKMRRRK 587
Score = 31.8 bits (71), Expect = 0.67
Identities = 20/122 (16%), Positives = 49/122 (40%), Gaps = 1/122 (0%)
Query: 123 QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAV 182
+ D + Q + + ++ + + + + L K ++ +E + QE +
Sbjct: 469 ESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHL 528
Query: 183 ADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAER 242
L K E ++ K++E E EQ L QK+ + ++ I++L+ ++ +
Sbjct: 529 KQLTE-KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRK 587
Query: 243 QS 244
Sbjct: 588 AC 589
Score = 30.7 bits (68), Expect = 1.5
Identities = 23/143 (16%), Positives = 63/143 (44%), Gaps = 8/143 (5%)
Query: 131 QEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKK 190
Q E+ + K+ + + + + E ++E ++ K E + +N++
Sbjct: 456 QAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ 515
Query: 191 ELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEK 250
+EQ + + + LT K+E+++ + K Q++ L+ L+E+ + ++ +K
Sbjct: 516 MMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALK-----LQEQEQLLKEGF---QK 567
Query: 251 QRADLARELEELGERLEEAGGAT 273
+ + E+++L ++ T
Sbjct: 568 ESRIMKNEIQDLQTKMRRRKACT 590
Score = 29.2 bits (64), Expect = 4.7
Identities = 31/260 (11%), Positives = 83/260 (31%), Gaps = 2/260 (0%)
Query: 298 NIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLARE 357
N A++ +Q+ Q +L T++ E H ++ +
Sbjct: 314 NAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSF 373
Query: 358 KAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQL 417
K K+L QL + + + N+ + + I + S+
Sbjct: 374 KDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGY 433
Query: 418 SKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQL 477
L + + + L ++ E D I + + E + +++ +
Sbjct: 434 RLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVER 493
Query: 478 SKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRLK 537
KA + + +E + ++ +S + + L +++ + + LK
Sbjct: 494 VKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALK 553
Query: 538 GAYEEAQEQLEAVRRENKNL 557
+E ++ L+ ++ +
Sbjct: 554 --LQEQEQLLKEGFQKESRI 571
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 35.1 bits (80), Expect = 0.057
Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 153 LKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLED 212
L++ K E E + +L++ ++E+ Q ++ KE + + E
Sbjct: 303 LEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEK 362
Query: 213 EQG-----LVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARE 258
E L +Q + K+L+ + + L++EV A +Q + AE ++ ++
Sbjct: 363 ELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQA 413
Score = 29.3 bits (65), Expect = 3.4
Identities = 18/129 (13%), Positives = 50/129 (38%), Gaps = 10/129 (7%)
Query: 193 EQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAE--------RQS 244
+ + K+ + ++ K + + ELQ + EE+ + +++
Sbjct: 301 CKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEA 360
Query: 245 RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHEST 304
+ ++ L + ++ ++LE+ + ++ K+R+ L+ +A T
Sbjct: 361 EKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAG--GSQT 418
Query: 305 LANLRKKHN 313
L ++K N
Sbjct: 419 LKRDKEKKN 427
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 35.3 bits (81), Expect = 0.058
Identities = 28/232 (12%), Positives = 82/232 (35%), Gaps = 13/232 (5%)
Query: 103 LDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEG 162
++L E + ++ +++ + ++ +L+ + I+D
Sbjct: 789 ENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRS 848
Query: 163 DVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQK 222
+ + + ++ + + + E + + + L+ GL+ ++ +
Sbjct: 849 AYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQE------INLDYILGLIFEHNR 902
Query: 223 QIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKK 282
Q K IEE++ + + +RAK + + L + ++A + ++
Sbjct: 903 QNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQ--TNLDDLPDKASIIDAFFTFAQRE 960
Query: 283 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAE 334
++ E L ++E N+ ++ +R E +LN+ K
Sbjct: 961 QQREAEAL---IKEENLNEDAAKRYIRTSLKRE--YATENGTELNETLPKLS 1007
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 34.3 bits (78), Expect = 0.074
Identities = 25/161 (15%), Positives = 65/161 (40%), Gaps = 2/161 (1%)
Query: 123 QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAV 182
+ E + + K + K I +LE + K ++ + + Q+
Sbjct: 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN 73
Query: 183 ADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAER 242
A + +K++ + + ++E+ SL + + + + ++I+ LQ I+ E+ E +
Sbjct: 74 AKIASIQKKMSE--IKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK 131
Query: 243 QSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKR 283
+ + EK +L +E + ++E + E ++
Sbjct: 132 KEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEK 172
Score = 30.5 bits (68), Expect = 1.1
Identities = 21/164 (12%), Positives = 61/164 (37%), Gaps = 2/164 (1%)
Query: 182 VADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAE 241
++ L++ LE I+ K K++ E + + +++ L+ ++ + E+ ++
Sbjct: 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT 72
Query: 242 RQSRAKAEKQRADL--ARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANI 299
A +K+ +++ REL L + A ++ + + E+ + E+
Sbjct: 73 NAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKK 132
Query: 300 QHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNE 343
+ + + +E+ + + K E +
Sbjct: 133 EMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPK 176
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 34.0 bits (79), Expect = 0.11
Identities = 18/94 (19%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 158 EDLEGDVEK-QKRKIEGDLKLTQEAVADLERNKKELEQTIQ-------RKDKEIASLTAK 209
E + E+ R E + + V +L++ ++E+ + ++ + KEI L +
Sbjct: 9 EKPDYVKERLATRDKELVSLV--DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKRE 66
Query: 210 LEDEQGL---VGKNQKQIKELQARIEELEEEVEA 240
+D + V + +++I L+ + ++EEE++
Sbjct: 67 GKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 34.0 bits (77), Expect = 0.13
Identities = 30/202 (14%), Positives = 71/202 (35%), Gaps = 18/202 (8%)
Query: 215 GLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATS 274
LV ++ ++ R EEL + K ++ + + +E +
Sbjct: 5 VLVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQ 64
Query: 275 AQIELNKKREAEMSKLRRDLEEANIQHESTLANLRK----KHNDAVSEMGEQI-----DQ 325
+ RE + + + LE + TL R KH + + +Q D+
Sbjct: 65 LNPQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDE 124
Query: 326 LNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRS 385
L + K + + N E + L ++ EK+A+ + +++ + + +
Sbjct: 125 LIQWKRRQQLAGNGGPPEGS--------LDVLQSWCEKLAEIIWQNRQQIR-RAEHLCQQ 175
Query: 386 LNDFDAAKKKLSIENSDLLRQL 407
L ++ L+ N+ + +
Sbjct: 176 LPIPGPVEEMLAEVNATITDII 197
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.14
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
Query: 225 KELQARIEELEEEVEAERQS-RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKR 283
+E + R++EL+ + Q R KA+K + + E E+ N+
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK----------NKINNRIA 141
Query: 284 EAEMSKLRRD 293
+ +
Sbjct: 142 DKAFYQQPDA 151
Score = 32.8 bits (74), Expect = 0.15
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 20/96 (20%)
Query: 229 ARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMS 288
A+ + L +E E+ R+ R E+QR L+EL + +
Sbjct: 75 AQADRLTQEPESIRKWR---EEQRK----RLQELDAASK-------------VMEQEWRE 114
Query: 289 KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQID 324
K ++DLEE N + + + + A +Q D
Sbjct: 115 KAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Score = 29.0 bits (64), Expect = 3.2
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 460 REQLEE-EAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVD-DLAA 517
R++L+E +A K Q KA D + W + E++E++K R D
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS-------EQVEKNKINNRIADKAFYQ 147
Query: 518 ELDAS 522
+ DA
Sbjct: 148 QPDAD 152
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 33.8 bits (78), Expect = 0.15
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 222 KQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNK 281
+++++L+ +I LEEE EA ++ + + + + + L G Q+
Sbjct: 77 QELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQL---T 133
Query: 282 KREAEMSKLRRDLEEA-----NIQHEST 304
+ ++L N H
Sbjct: 134 LLYPKEAQLEEQFYLRALRLPNQTHPDV 161
Score = 30.3 bits (69), Expect = 1.8
Identities = 10/103 (9%), Positives = 33/103 (32%), Gaps = 14/103 (13%)
Query: 158 EDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQ-----RKD--KEIASLTAKL 210
E + + + ++L + I+ ++ + + +L
Sbjct: 48 AYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQ 107
Query: 211 EDEQGLVGKNQ----KQIKELQARIEELEE---EVEAERQSRA 246
++ Q + +E++ ++ L ++E + RA
Sbjct: 108 DNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150
Score = 28.0 bits (63), Expect = 8.8
Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 7/92 (7%)
Query: 121 YSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQE 180
+ + QL +Q + LE+E + + + L +
Sbjct: 64 LRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRAL-------VVNQDNSQVQQDP 116
Query: 181 AVADLERNKKELEQTIQRKDKEIASLTAKLED 212
L +E+ + + + A L +
Sbjct: 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 33.7 bits (76), Expect = 0.19
Identities = 25/198 (12%), Positives = 66/198 (33%), Gaps = 17/198 (8%)
Query: 232 EELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLR 291
+EL+ +V + E + L +E + + + + E N +++ + +
Sbjct: 5 KELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTL---QNREHETNGVAKSDQKQEQ 61
Query: 292 RDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAA 351
L++ + ++ + K + ++ + L + R
Sbjct: 62 LLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRR-------------- 107
Query: 352 DQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAE 411
Q A QLQ+ V L + + L + ++K + E+ + + +
Sbjct: 108 QQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLW 167
Query: 412 SQVSQLSKIKISLTTQLE 429
+ L + I + +E
Sbjct: 168 DRTFSLFQQLIQSSFVVE 185
Score = 31.4 bits (70), Expect = 0.95
Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 9/175 (5%)
Query: 164 VEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQ 223
++KQK +++ ++ ++ V +E K LE D + +L + + G+ +QKQ
Sbjct: 1 LDKQK-ELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQ 59
Query: 224 IKELQARIEELEEEVEAERQSRAKA------EKQRADLARELEELGERLEEAGGATSAQI 277
+ L ++ + + E + Q A + EL E R + A
Sbjct: 60 EQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNA 119
Query: 278 ELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTK 332
L + + + + L++ Q L L +K+ + + L
Sbjct: 120 CL-DQLQNWFTIVAESLQQ-VRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFS 172
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 33.3 bits (77), Expect = 0.24
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 129 LQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERN 188
L++E+D +Q ++ K +E E L ++I L + E+++ + +EA L+
Sbjct: 420 LKKEKDPDSQ--ERLKAIEAEIAKLTEEIAKLRAEWEREREILRK----LREAQHRLDEV 473
Query: 189 KKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAER 242
++E+E ++ D A+ E G ++ +L+A +E L E++ R
Sbjct: 474 RREIELAERQYDLNRAA-----ELRYG-------ELPKLEAEVEALSEKLRGAR 515
Score = 33.3 bits (77), Expect = 0.24
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Query: 190 KELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVE-AERQSR-AK 247
K +E I + +EIA L A+ E E+ ++ K ++E Q R++E+ E+E AERQ +
Sbjct: 433 KAIEAEIAKLTEEIAKLRAEWEREREILRK----LREAQHRLDEVRREIELAERQYDLNR 488
Query: 248 AEKQR----ADLARELEELGERLEEA 269
A + R L E+E L E+L A
Sbjct: 489 AAELRYGELPKLEAEVEALSEKLRGA 514
Score = 32.1 bits (74), Expect = 0.58
Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 224 IKELQARIEELEEEVEAERQSRAKAEKQR-ADLARELEELGERLEEAGGATSAQIELNKK 282
I L+ + +LE E EA ++ + ++R + E+ +L E + + A+ E ++
Sbjct: 403 IDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAK----LRAEWERERE 458
Query: 283 REAEMSKLRRDLEEANIQHE 302
++ + + L+E + E
Sbjct: 459 ILRKLREAQHRLDEVRREIE 478
Score = 29.4 bits (67), Expect = 3.8
Identities = 12/93 (12%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 129 LQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQE----AVAD 184
L +E +++++++ ++ + ++++ ++E +R + DL E +
Sbjct: 442 LTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAER--QYDLNRAAELRYGELPK 499
Query: 185 LERNKKELEQTIQRK--------DKEIASLTAK 209
LE + L + ++ +++IA + ++
Sbjct: 500 LEAEVEALSEKLRGARFVRLEVTEEDIAEIVSR 532
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 32.8 bits (73), Expect = 0.28
Identities = 23/130 (17%), Positives = 48/130 (36%)
Query: 130 QQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNK 189
+ F++ K+ E +K +VE K+ K + A++ +K
Sbjct: 118 EAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSK 177
Query: 190 KELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAE 249
+ ++ K + +D K +K +KEL + E +E + + E
Sbjct: 178 ADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFE 237
Query: 250 KQRADLAREL 259
++R RE+
Sbjct: 238 EKRLRFFREV 247
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 32.7 bits (75), Expect = 0.29
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 2/116 (1%)
Query: 191 ELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEK 250
++ I DK+ E + L+ K + + E + E Q + E
Sbjct: 34 DIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYEN 93
Query: 251 QRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEA--NIQHEST 304
+ + +L++ S Q+ K ++ + R L NI HES
Sbjct: 94 GTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESV 149
Score = 30.0 bits (68), Expect = 2.3
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 14/117 (11%)
Query: 124 DTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVA 183
D VD + + + + + ++ K + G +K K ++ +
Sbjct: 34 DIVDAIIEADKKWRRTQFLTEASKKLINICSKAV----GAKKKAKEADGDTSEIPPQVKE 89
Query: 184 DLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEA 240
E + EQ Q ++ L+ L D+ + L ++LEEE +
Sbjct: 90 AYENGTLKGEQVEQLCVLQLKQLSKDLSDQ----------VAGLAKEAQQLEEERDK 136
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 32.5 bits (73), Expect = 0.31
Identities = 8/65 (12%), Positives = 25/65 (38%)
Query: 179 QEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEV 238
++L Q ++ L +++++ + + + +L ++ ++E E
Sbjct: 147 LWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWEY 206
Query: 239 EAERQ 243
E E
Sbjct: 207 ECEPG 211
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 32.6 bits (73), Expect = 0.37
Identities = 38/278 (13%), Positives = 92/278 (33%), Gaps = 30/278 (10%)
Query: 176 KLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELE 235
+ + A D+ + + D + + + E+ L +K + LQ +E
Sbjct: 41 QDWEHAANDVSFATIRFHDLLSQLDDQYSRFSL--ENNFLLQHNIRKSKRNLQDNFQEDP 98
Query: 236 EEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKR----------EA 285
++ S K E++ + A+ + ++ Q EL+ K E
Sbjct: 99 IQMSMIIYSCLKEERKILENAQRFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEH 158
Query: 286 EMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETN 345
E+ L +E + + ++ + + A S+ ++ L K+ +++R ++
Sbjct: 159 EIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKII 218
Query: 346 NTRAAAD------------------QLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLN 387
+ Q A QLQ+ V L + + L
Sbjct: 219 ELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQLK 278
Query: 388 DFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLT 425
+ ++K + E+ + + + + L + I +
Sbjct: 279 KLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQSS 316
Score = 31.4 bits (70), Expect = 0.85
Identities = 18/143 (12%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
Query: 129 LQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGD-VEKQKRKIEGDLKLTQEAVADLER 187
+Q + L +++K LE + +++ + ++++++ ++ ++ V +E
Sbjct: 99 IQMSMIIYSCLKEERKILENAQRFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEH 158
Query: 188 NKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAK 247
K LE D + +L + + G+ + K+ Q ++++ ++ +R+
Sbjct: 159 EIKSLEDLQDEYDFKCKTLQNREHETNGV---AKSDQKQEQLLLKKMYLMLDNKRKEVVH 215
Query: 248 AEKQRADLARELEE--LGERLEE 268
+ ++ + + + L E
Sbjct: 216 KIIELLNVTELTQNALINDELVE 238
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump,
subunit I/A, V-ATPase, proton; HET: NHE; 2.64A
{Meiothermus ruber}
Length = 357
Score = 32.4 bits (73), Expect = 0.40
Identities = 17/94 (18%), Positives = 33/94 (35%)
Query: 157 IEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGL 216
I+ L D + R + + A + + ++ L T LE+ + +
Sbjct: 41 IDPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLATVPSSKPFTGSLEEAEAV 100
Query: 217 VGKNQKQIKELQARIEELEEEVEAERQSRAKAEK 250
+ + + L LEEE++ AEK
Sbjct: 101 LRPVASRAEVLGKERAALEEEIQTIELFGKAAEK 134
Score = 29.3 bits (65), Expect = 3.5
Identities = 38/265 (14%), Positives = 76/265 (28%), Gaps = 9/265 (3%)
Query: 90 KGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQE 149
K + + V++ S L++ E +Q Q +
Sbjct: 23 KRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLA 82
Query: 150 NGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAK 209
K + E R + ++ + A LE + +E + +++A+L
Sbjct: 83 TVPSSKPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKA-AEKLAALAHG 141
Query: 210 LEDEQGL------VGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELG 263
L++ L V K ++ +A E L + E + + R E
Sbjct: 142 LDESPRLGVIPFLVAKPEELEAVRKALQEALADRFVLEAEPLENQLAALVVVKRSELEAA 201
Query: 264 ERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI 323
G + + K ++E L +R++ E GE +
Sbjct: 202 RSSLSRLGLAELRFP-GAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEAL 260
Query: 324 DQLNKLKTKAEHERNAAHNETNNTR 348
L E R A + +
Sbjct: 261 IALWTRAKD-EVARYKAVADMAAGK 284
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 32.5 bits (75), Expect = 0.46
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 221 QKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEEL-GERLEEAGGATSAQIEL 279
K +++ I++L +E +++ K ++ + +L ERL
Sbjct: 210 VKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVKYTHKLAMERLYAV-----FTDYE 264
Query: 280 NKK--REAEMSKLRRDLEEA 297
+ K R+ ++K+R D EE
Sbjct: 265 HDKVSRDEAVNKIRLDTEEQ 284
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon,
crotonase superfamily, spiral domain, ligase; 3.20A
{Escherichia coli} SCOP: c.14.1.4
Length = 339
Score = 31.9 bits (73), Expect = 0.47
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 222 KQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEE 268
+ I EL+A+I+ L + EK ++ E+ L E+ E
Sbjct: 30 QPIAELEAKIDSL-------TAGSRQDEKLDINIDEEVHRLREKSVE 69
Score = 28.1 bits (63), Expect = 9.1
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 201 KEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEK--QRADLAR 257
+ IA L AK++ +++K + + L E+ + Q A LAR
Sbjct: 30 QPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQLAR 88
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 32.1 bits (73), Expect = 0.50
Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 5/134 (3%)
Query: 190 KELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAE 249
E E+ Q+ + + +LE +G + ++ +K + LE+E E + +
Sbjct: 159 DEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTKFVEYLD 218
Query: 250 KQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLR 309
K R R + R + + + +E +E A
Sbjct: 219 KVRRIFGRNGFQAYLREKY----VPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNG 274
Query: 310 KKHNDAVSEMGEQI 323
D +S GEQI
Sbjct: 275 VLTIDNLSG-GEQI 287
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 31.7 bits (71), Expect = 0.60
Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 9/124 (7%)
Query: 158 EDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLV 217
L + +LT+ +A +E ++E +++ + E+ EQ
Sbjct: 293 RKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEM---------EQVFE 343
Query: 218 GKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQI 277
K ++++++L+ EL+ E +++ K+ + R+ E+ E Q
Sbjct: 344 MKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQN 403
Query: 278 ELNK 281
Sbjct: 404 SSRT 407
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 327
Score = 31.1 bits (71), Expect = 0.87
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 222 KQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEE 268
K + E++ +IE L + +K DL E++ L LE
Sbjct: 19 KPLFEIRNKIESL----------KESQDKNDVDLQEEIDMLEASLER 55
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 31.0 bits (69), Expect = 0.90
Identities = 23/130 (17%), Positives = 48/130 (36%)
Query: 130 QQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNK 189
+ F++ K+ E +K +VE K+ K + A++ +K
Sbjct: 125 EAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSK 184
Query: 190 KELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAE 249
+ ++ K + +D K +K +KEL + E +E + + E
Sbjct: 185 ADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFE 244
Query: 250 KQRADLAREL 259
++R RE+
Sbjct: 245 EKRLRFFREV 254
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 30.9 bits (70), Expect = 0.95
Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 198 RKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLAR 257
K + + ++ ++ A+I+EL E +Q + ++Q D+ +
Sbjct: 2 SGQKTVQKILEEVR-------ILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54
Query: 258 ELEEL 262
Sbjct: 55 TCSRP 59
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 31.1 bits (71), Expect = 1.1
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 201 KEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAK 247
+IA+L K+ + + +++IK+ + ++EL E + E R
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRT 49
Score = 30.3 bits (69), Expect = 2.0
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 229 ARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEA 269
++I L+E++ A ++ A +++ D ++EL E L +
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 31.3 bits (71), Expect = 1.2
Identities = 19/107 (17%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 105 VLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDV 164
+++F T S+ ++ L +E ++ ++++ L + N K +++LE +
Sbjct: 2118 LVHFVTNKE-----SIETRIFDITLTEE---NAEMQRKREDLIKLNTEYKLKLKNLEKRL 2169
Query: 165 EKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLE 211
++ +G++ E + L KKE I++K E + +
Sbjct: 2170 LEELNNSQGNMLENDELMVTLNNLKKEAMN-IEKKLSESEEFFPQFD 2215
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 30.7 bits (68), Expect = 1.4
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 218 GKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGG 271
G + K+L+A + E E+ RQ+ K RE + ++
Sbjct: 428 GPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM-----REAALNNQPMQVMAE 476
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 30.3 bits (68), Expect = 1.5
Identities = 35/211 (16%), Positives = 76/211 (36%), Gaps = 16/211 (7%)
Query: 132 EEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKE 191
EED +L QE+ +D ++ +GD + D +L +E A+L
Sbjct: 62 EEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVV 121
Query: 192 LEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQ 251
TI+ K + A ++E + + KQ + + + + L + E+
Sbjct: 122 TRDTIKAKGRS----HATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERL 177
Query: 252 RADLARE--------LEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 303
L E L E + +A I +NK ++ + ++ A
Sbjct: 178 IMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRAL----Q 233
Query: 304 TLANLRKKHNDAVSEMGEQIDQLNKLKTKAE 334
L + ++ + ++ + +++ + KA
Sbjct: 234 KLQQIEEETGLTIEQVKDINRRMSIGEAKAR 264
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 29.2 bits (65), Expect = 1.5
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 220 NQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGER 265
NQ + + L R + E E+E + + +++ + ++ELG
Sbjct: 2 NQDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRE 47
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23,
struc genomics, PSI, protein structure initiative; 2.20A
{Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Length = 305
Score = 30.2 bits (68), Expect = 1.6
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 431 TK---RLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAE 468
T RL +G A G L I + + E
Sbjct: 21 TGTRIRLHASDGTPLAMAEGGASALSQGIAKSWQAVLSTLE 61
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 30.2 bits (67), Expect = 1.8
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 375 VQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRL 434
++G +DE N+ + K E + + + ++ + S ++T
Sbjct: 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNR 110
Query: 435 ADEEGRERATLL-----GKFRNLEHDIDNIREQLEE 465
E+ R R +L K ++++ N+R QL +
Sbjct: 111 VSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVD 146
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 30.2 bits (67), Expect = 1.9
Identities = 23/130 (17%), Positives = 48/130 (36%)
Query: 130 QQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNK 189
+ F++ K+ E +K +VE K+ K + A++ +K
Sbjct: 125 EAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSK 184
Query: 190 KELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAE 249
+ ++ K + +D K +K +KEL + E +E + + E
Sbjct: 185 ADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFE 244
Query: 250 KQRADLAREL 259
++R RE+
Sbjct: 245 EKRLRFFREV 254
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 29.8 bits (68), Expect = 2.5
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 158 EDLEGDVEKQ-KRKIEGDLKLTQEAVADLERNKKELEQTIQ-----RKD--KEIASLTAK 209
++ E ++ + DL EA+ L+R +EL++ +Q R K + A
Sbjct: 9 QEPEVFHRAIREKGVALDL----EALLALDREVQELKKRLQEVQTERNQVAKRVPK--AP 62
Query: 210 LEDEQGLVGKNQK---QIKELQARIEELEEEVEA 240
E+++ L+ + + + K L+ + E E +EA
Sbjct: 63 PEEKEALIARGKALGEEAKRLEEALREKEARLEA 96
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 29.8 bits (66), Expect = 2.6
Identities = 21/138 (15%), Positives = 43/138 (31%)
Query: 122 SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEA 181
+ ++ +++K LE +K L VEK K K + A
Sbjct: 95 NSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSA 154
Query: 182 VADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAE 241
+ + + K + + Q K ++ I E+ E++ +
Sbjct: 155 TNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSVYIEDMTSV 214
Query: 242 RQSRAKAEKQRADLAREL 259
+ EK R +E+
Sbjct: 215 FEKCQTFEKTRLQFFKEI 232
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural
genomics, the center for structural genomics of I
diseases, csgid; 1.87A {Listeria monocytogenes}
Length = 249
Score = 29.4 bits (66), Expect = 2.7
Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 18/155 (11%)
Query: 120 LYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQ 179
+YS+ VD+LQQ + F L++ L + D ++ Q+ +
Sbjct: 41 IYSEKDVDKLQQILFFKELDF----PLKKIQQILDDPLFDKNVALDMQRHLLI------- 89
Query: 180 EAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVE 239
E +E L+ TI+ + EI + +++ G + + + ++V
Sbjct: 90 EKKQRIETMLATLDLTIKNEKGEI-----TMTNKEKFTGFDFSSNPYEEEARKLWGDKVV 144
Query: 240 AERQSRAKA--EKQRADLARELEELGERLEEAGGA 272
+ + EK++ L + L
Sbjct: 145 EKANEKVNNMSEKEQLTLKESFDAEFRHLASVRKL 179
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 29.7 bits (67), Expect = 2.7
Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 11/103 (10%)
Query: 121 YSQDTVDRLQQEEDAR-------NQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEG 173
VD+L + + + L + K + G K E + D + +
Sbjct: 28 KDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSF 87
Query: 174 DL----KLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLED 212
D L V+ +++ + +++ I + D E L A+ +
Sbjct: 88 DDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFE 130
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix,
structural; 1.70A {Homo sapiens}
Length = 86
Score = 27.6 bits (62), Expect = 2.8
Identities = 13/60 (21%), Positives = 26/60 (43%)
Query: 456 IDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDL 515
+ +R Q+++ KA ++ + D R K + E + R E +S + VD+
Sbjct: 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA 61
Score = 26.4 bits (59), Expect = 6.8
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 231 IEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL 290
+ EL +V+ +A+ E +R +LA ++ L E+L+E + ++ E +
Sbjct: 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE-------MLQREEAENTLQSF 54
Query: 291 RRDLEEANI 299
R+D++ A++
Sbjct: 55 RQDVDNASL 63
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate
dehydrogenase, putative D-LACT dehydrogenase; HET: FAD;
2.57A {Rhodopseudomonas palustris}
Length = 476
Score = 29.5 bits (67), Expect = 3.0
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 252 RADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKK 311
R D LE + ER E G A I + +++ KLR ++ A + E
Sbjct: 299 RDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPA-QKPEGGSIK---- 353
Query: 312 HNDA---VSEMGEQIDQLNKL 329
+D V+ + + I+Q N
Sbjct: 354 -HDISVPVAAVPQFIEQANAA 373
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 29.5 bits (66), Expect = 3.2
Identities = 24/155 (15%), Positives = 55/155 (35%), Gaps = 3/155 (1%)
Query: 314 DAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLN 373
++ G +L +L + A N+ +A R + + ++Q +L
Sbjct: 82 RSIPPEGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQ 141
Query: 374 EVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKR 433
V+G E + K+KL E + + + + + +SK + L+ ++ +
Sbjct: 142 LVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGS 201
Query: 434 LADEEGRER-ATLLGKFRNL--EHDIDNIREQLEE 465
D + G + H + +R Q +
Sbjct: 202 WRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQ 236
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 29.5 bits (67), Expect = 3.3
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 221 QKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEEL-GERLEEAGGATSAQIEL 279
+ IK L +L + + D+ L L A I
Sbjct: 250 KPFIKVLCKAQADLAAKAAKPTGEFPVFLDYQDDVLEALSAAVRPELSAA-----LTIAG 304
Query: 280 NKKREAEMSKLRRDLEEA 297
+ REAE+ +++ E
Sbjct: 305 KQDREAELDRVKALAAEK 322
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 29.0 bits (64), Expect = 3.3
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 186 ERNKKELEQTIQRKDKEIASLTAKLEDEQG--LVGKNQKQIKELQARIEELEEEVEAERQ 243
+++ +E A L +LE+ G ++ + I +L+ARI+ L +
Sbjct: 16 SPLSSGDAAELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLME 75
Query: 244 SRAKAEKQRADLARELEELGE 264
+ +A +Q L E++ LG+
Sbjct: 76 TLKEARQQLLALREEVDRLGQ 96
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 29.7 bits (66), Expect = 3.5
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 6/121 (4%)
Query: 434 LADEEGRERATLLGKFRNLEHDIDNIREQLEEE--AEGKADLQRQLSKANADAQLWRTKY 491
L D+ G A + F ++ + + + D+ L A +
Sbjct: 844 LLDKNGNNLAAQVE-FETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARAL 902
Query: 492 ESEGVARAEELEESKSEERRVDDLAAELDA-SQKECRNYSTELFRLKGAYEEAQEQLEAV 550
AR E E+ +E R++ L A E + ++ + ++A +L+A+
Sbjct: 903 IDA--ARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDAL 960
Query: 551 R 551
R
Sbjct: 961 R 961
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 28.3 bits (63), Expect = 3.8
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 193 EQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQ 243
Q Q++ + + E+ + + L R + LE ++ R+
Sbjct: 122 GQEQQQQQQFVRHSEKAAEEAY------TRTTRALHERFDRLERMLDDNRR 166
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 29.3 bits (66), Expect = 3.9
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 4/110 (3%)
Query: 153 LKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLED 212
L + D + R+ + T + E + E+ +++ S ++ +
Sbjct: 101 LGESTTDWKQIRSIIMRE---NFIPTIVNFSAEEISDAIREK-MKKNYMSNPSYNYEIVN 156
Query: 213 EQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEEL 262
L + Q ++ + VE R K E D ++LE L
Sbjct: 157 RASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEAL 206
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 29.1 bits (66), Expect = 4.1
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 222 KQIKELQARIEELEEEVEA--ERQSRAKAEKQR---ADLARELEELGERLEEAGGATSAQ 276
+KEL+ +++E+ +E +A + Q KA R L ++E+ + +E G +++
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Query: 277 I 277
+
Sbjct: 454 V 454
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A
{Saccharomyces cerevisiae} SCOP: a.252.1.1
Length = 151
Score = 28.2 bits (62), Expect = 4.2
Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 183 ADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAER 242
+ EL I K ++I L L + ++I LQ ++ E+E+E
Sbjct: 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEK---I 109
Query: 243 QSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKK 282
++ K EK + +E+ + + + +T+A +E +
Sbjct: 110 EAIKKKEKLLRHVDSLIEDFVDGIANSKKSTAAALEHHHH 149
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 29.2 bits (65), Expect = 4.2
Identities = 12/67 (17%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 181 AVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQI-KELQARIEELEEEVE 239
+++ ++ KE+ + +Q+ KE ++ +E+ + + ++ + KEL I E +
Sbjct: 892 KDSEIRKHGKEVAKIVQKLIKERTFDVKRI-NEEKALREAKEFMEKELGIEIIINPTEDK 950
Query: 240 AERQSRA 246
++ +A
Sbjct: 951 GGKKKQA 957
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 27.9 bits (62), Expect = 4.3
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 193 EQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQ 243
+ +R+ + E+ + + L R + LE ++ R+
Sbjct: 95 GREQERRGHFVRHSEKAAEEAY------TRTTRALHERFDRLERMLDDNRR 139
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 28.7 bits (65), Expect = 4.7
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 14/108 (12%)
Query: 202 EIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAER----QSRA-KAEKQRADLA 256
++ L +LE G+ I + + R++ELE +E A K ++ A L
Sbjct: 2 DLERLAQRLEGLGGIFD-----IPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLR 56
Query: 257 RELE---ELGERLEEAGGATS-AQIELNKKREAEMSKLRRDLEEANIQ 300
R ++ L L+ E + + E+ + + L+E Q
Sbjct: 57 RTVDTFRSLESDLQGLLELMEELPAEEREALKPELEEAAKKLDELYHQ 104
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 28.4 bits (64), Expect = 5.7
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 179 QEAVADLERNKKE-----LEQTIQ---RKDKEIASLTAKLEDEQGLVGKNQKQIKELQAR 230
+ LE+N + + TI+ + E+ K E ++ ++Q
Sbjct: 166 KSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGK-NIELAVMRRDQSLKILNPEE 224
Query: 231 IEELEEEVEAERQSRAKAEKQRA 253
IE+ E+E E++ K ++++A
Sbjct: 225 IEKYVAEIEKEKEENEKKKQKKA 247
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 28.4 bits (64), Expect = 6.5
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 227 LQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEE 268
+ + L EV RQ + + A ELE E+L +
Sbjct: 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 27.2 bits (61), Expect = 6.9
Identities = 21/97 (21%), Positives = 45/97 (46%)
Query: 453 EHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRV 512
E ++ +R Q+++ KA ++ + D R K + E + R E +S + V
Sbjct: 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 78
Query: 513 DDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEA 549
D+ + +++ + E+ LK +EE ++L+A
Sbjct: 79 DNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQA 115
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 28.3 bits (64), Expect = 8.0
Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 222 KQIKELQARIEELEEEVEA--ERQSRAKAEKQR---ADLARELEELGERLEEAGGATSAQ 276
+KEL+ +++E+ +E +A + Q KA R L ++E+ + +E G +++
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Query: 277 ---------------IELNKKREAEMSKLRRDLEE 296
+ ++K + E KL +E
Sbjct: 454 VTVDDIAMVVSSWTGVPVSKIAQTETDKLLN-MEN 487
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLU ATP; 1.80A {Thermus
thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
1g59_A 1gln_A
Length = 468
Score = 28.3 bits (64), Expect = 8.1
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 200 DKEIASLTAKLEDEQGLVGKNQKQIKE----LQARIEELEEEVE-------AERQSRAKA 248
+E+A E GL +++ ++ ++ R + L+E E + KA
Sbjct: 324 LEEVAERVKPFLREAGLSWESEAYLRRAVELMRPRFDTLKEFPEKARYLFTEDYPVSEKA 383
Query: 249 EKQRADLARELEELGERLEEAGGATSAQIE 278
+++ + L+EL RL T A +E
Sbjct: 384 QRKLEEGLPLLKELYPRLRAQEEWTEAALE 413
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 28.3 bits (64), Expect = 8.4
Identities = 15/104 (14%), Positives = 41/104 (39%), Gaps = 18/104 (17%)
Query: 148 QENG----GLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEI 203
E+G ++K++ + ++ +E DL + ++L + I + +
Sbjct: 573 LEHGITPETVRKEVRAVIRPEGYEEAPLEADL------------SGEDLRERIAELELAM 620
Query: 204 ASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAK 247
L+ E+ + + +I+ L+AR++ + + K
Sbjct: 621 WQAAEALDFERA--ARLRDEIRALEARLQGVRAPEPVPGGRKRK 662
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry,
GAL4, complex activator/DNA, gene regulation/DNA
complex; HET: DNA; 2.50A {Saccharomyces cerevisiae}
SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Length = 81
Score = 26.0 bits (57), Expect = 9.1
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 221 QKQIKELQARIEELEEEVEAERQS 244
++K+L+ R++ LE+ + S
Sbjct: 57 DNELKKLRERVKSLEKTLSKVHSS 80
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 26.9 bits (59), Expect = 9.1
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 134 DARNQL----FQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNK 189
+ L F K +E E K + ED + ++K I K + E +
Sbjct: 4 RGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQ 63
Query: 190 KELEQTIQ 197
KELE+
Sbjct: 64 KELEKVCN 71
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 27.5 bits (61), Expect = 9.4
Identities = 9/52 (17%), Positives = 25/52 (48%)
Query: 185 LERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEE 236
L+ + + + ++ + + Q + +NQ +I+EL+ +I +E+
Sbjct: 182 LKEQSAIFKSKWRHEANTWQNIIQTISNNQPVSTENQAKIRELEHKIALVED 233
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation,
ATPase, transmembrane transport, helicase-like motor
domain; HET: ADP; 2.60A {Mycobacterium tuberculosis}
SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB:
1nl3_A
Length = 922
Score = 28.0 bits (63), Expect = 9.5
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 219 KNQKQIKELQ---ARIEELEEEVEA--ERQSRAKAE--KQRADLARELEELGERLEEA 269
+ +K L+ + L ++VE + + RAK + K+R + E L + L EA
Sbjct: 39 GEGRMVKRLKKVADYVGTLSDDVEKLTDAELRAKTDEFKRRLADQKNPETLDDLLPEA 96
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural
genomics, protein structure initiative, nysgxrc; 2.80A
{Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Length = 541
Score = 28.1 bits (63), Expect = 9.9
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 176 KLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELE 235
K ++E + + + ++ + + SL +G+ + + EL A + EL
Sbjct: 451 KFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELG 510
Query: 236 EEVEAERQSRAKAEKQRADLARELEELGERLEEAG 270
EA+ Q + E G EE G
Sbjct: 511 ASDEADLQRQLLE-----------EAFGGVKEEGG 534
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.304 0.122 0.305
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,823,760
Number of extensions: 496821
Number of successful extensions: 3301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2600
Number of HSP's successfully gapped: 828
Length of query: 558
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 460
Effective length of database: 3,965,535
Effective search space: 1824146100
Effective search space used: 1824146100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 60 (27.9 bits)