RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8739
(558 letters)
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 287
Score = 34.5 bits (78), Expect = 0.025
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 219 KNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARE 258
N++Q+K+++ I +L +E + ++ A K+ A +
Sbjct: 25 ANEEQLKKIEEEIHQLIKEAQEAGKADADVNKRGELTALQ 64
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 33.3 bits (75), Expect = 0.068
Identities = 8/42 (19%), Positives = 22/42 (52%)
Query: 221 QKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEEL 262
+++ +EL E+ E+E ++ ++ +R +L + +L
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 43
Score = 26.4 bits (57), Expect = 9.5
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 185 LERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEEL 234
L + +EL + +++ E+ + +L + KEL + +L
Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQSN-------MERKELHNTVMDL 43
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific
5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Length = 458
Score = 32.1 bits (73), Expect = 0.16
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 231 IEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL 290
+EEL EE+ ++ ++ EK+ + +EL ++ + T + E +++ + E+ L
Sbjct: 323 VEELGEEIASQIRAL-PIEKKIGEAMAIKKELEQKYVDL--CTRSIDESSQQYDQEIHDL 379
Query: 291 RRDLEEANIQHESTLANLRKKHN 313
+ + ++Q L +N
Sbjct: 380 QLQISTVDLQISRLLQEQNSFYN 402
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 31.6 bits (70), Expect = 0.24
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 229 ARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKR 283
+ +++L +E E + A K AD L ++ ++ G +I++ +R
Sbjct: 2 SELDQLRQEAEQLKNQIRDARKACAD--ATLSQITNNIDPVG-----RIQMRTRR 49
Score = 29.7 bits (65), Expect = 0.81
Identities = 7/41 (17%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 223 QIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELG 263
++ +L+ E+L+ ++ R +A A+ + + ++ +G
Sbjct: 3 ELDQLRQEAEQLKNQIRDAR--KACADATLSQITNNIDPVG 41
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 30.2 bits (67), Expect = 0.82
Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 16/169 (9%)
Query: 86 EELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKK 145
E+ K S + +K + L T + ++ L + ++ + + +
Sbjct: 600 WEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAE 659
Query: 146 LEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLER--------NKKELEQTIQ 197
+ G D ED E E + I G +L L ++L + Q
Sbjct: 660 QINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQ 719
Query: 198 RKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRA 246
K+ E+ +L + +L+A +E ++ + ++R
Sbjct: 720 EKETELENLLKLSAKDI--------WNTDLKAFEVGYQEFLQRDAEARG 760
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 273
Score = 29.2 bits (65), Expect = 1.4
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 12/56 (21%)
Query: 216 LVGKNQKQIKELQ---ARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEE 268
+ ++ + + I+ + + E L + E ERLE+
Sbjct: 8 MFDPTKRTLNRYEKIANDIDAIRGDYEN---------LSDDALKHKTIEFKERLEK 54
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 129
Score = 27.4 bits (61), Expect = 2.4
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 14/87 (16%)
Query: 183 ADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAER 242
+ EL I K ++I L L + ++I LQ ++ E+E+E
Sbjct: 52 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAI 111
Query: 243 QSRAKAEKQRADLARELEELGERLEEA 269
++ E+L ++
Sbjct: 112 --------------KKKEKLMRHVDSM 124
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 27.7 bits (60), Expect = 2.9
Identities = 13/115 (11%), Positives = 36/115 (31%), Gaps = 4/115 (3%)
Query: 311 KHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQH 370
+ A E+ I + T + ++ A + + +
Sbjct: 113 RRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERL 172
Query: 371 QLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQL--SKIKIS 423
+ + NR++ A L ++++ L +E+ + Q K+ ++
Sbjct: 173 LAEIKERDDRDRNRAVAPLVPAADALVLDSTTL--SIEQVIEKALQYARQKLALA 225
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 28.1 bits (62), Expect = 3.0
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 222 KQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEE 268
+ I EL+A+I+ L + EK ++ E+ L E+ E
Sbjct: 7 QPIAELEAKIDSL-------TAGSRQDEKLDINIDEEVHRLREKSVE 46
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 27.6 bits (61), Expect = 4.5
Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 32/175 (18%)
Query: 110 TENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLE-----QENGGLKKDIEDLEGDV 164
+ ++ T+ L++ D + L L E + + +
Sbjct: 322 IAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTAL 381
Query: 165 EKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKE--------------IASLTAKL 210
++ + + A D R + + R + LT L
Sbjct: 382 VANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLT-GL 440
Query: 211 EDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGER 265
E E K + KEL +I EL + + ++ + ELE + E+
Sbjct: 441 EHE-----KLLDEYKELLDQIAELLRILGSA-------DRLMEVIREELELVREQ 483
>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095
{Ralstonia eutropha [TaxId: 106590]}
Length = 81
Score = 25.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 259 LEELGERLEEAGGATSAQIELNKKREAEMSKLRRDL 294
L L E E G + ++ K+ + MS LRR L
Sbjct: 10 LLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVL 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.304 0.122 0.305
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,787,352
Number of extensions: 85628
Number of successful extensions: 615
Number of sequences better than 10.0: 1
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 193
Length of query: 558
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 468
Effective length of database: 1,171,896
Effective search space: 548447328
Effective search space used: 548447328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.2 bits)