BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy874
(191 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|289724715|gb|ADD18320.1| ribonuclease H [Glossina morsitans morsitans]
Length = 299
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 25/150 (16%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
++ D +++ +TDG+C NG A AGYGVYFG+N+PLNVA VTGRVTNN EIQ AI+A
Sbjct: 139 INEDGYILAYTDGSCFNNGGKNACAGYGVYFGDNHPLNVAEPVTGRVTNNVGEIQAAIYA 198
Query: 61 LKQAKSANEKVKLKRSYNDTHAQKKVRNVS-------------SVAMRIAQKVDYISHDV 107
+K A +K+ + + T +Q + V+ R+ +VD+ D
Sbjct: 199 VKTA----QKMGINKLCISTDSQFLINAVTLWIKGWKAKNWHLKTGDRVKNEVDFKELDS 254
Query: 108 ISVGIPFPSIQDENVKLKRSYNDTHAQKKG 137
+ +QDE++ +K +Y H KG
Sbjct: 255 L--------LQDESLDVKWNYVKAHKGIKG 276
>gi|390179738|ref|XP_003736961.1| GA21286, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859951|gb|EIM53034.1| GA21286, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 305
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 51/65 (78%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V+V+TDG+C NG+ GA AGYGVYFG+N+ LN A V+GRVTNN EIQ AIHA
Sbjct: 147 IDTEGYVIVYTDGSCIGNGRKGACAGYGVYFGDNHKLNAAKPVSGRVTNNVGEIQAAIHA 206
Query: 61 LKQAK 65
+K A+
Sbjct: 207 IKTAR 211
>gi|390179740|ref|XP_001361472.2| GA21286, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|388859952|gb|EAL26050.2| GA21286, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 308
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 51/65 (78%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V+V+TDG+C NG+ GA AGYGVYFG+N+ LN A V+GRVTNN EIQ AIHA
Sbjct: 153 IDTEGYVIVYTDGSCIGNGRKGACAGYGVYFGDNHKLNAAKPVSGRVTNNVGEIQAAIHA 212
Query: 61 LKQAK 65
+K A+
Sbjct: 213 IKTAR 217
>gi|45552509|ref|NP_995777.1| ribonuclease H1, isoform B [Drosophila melanogaster]
gi|45445652|gb|AAS64899.1| ribonuclease H1, isoform B [Drosophila melanogaster]
Length = 314
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 49/64 (76%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V+V+TDG+C NG+ GA AGYGVYFG+N+ LN A V GRVTNN EIQ AIHA
Sbjct: 157 IDAEGYVIVYTDGSCIGNGRAGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHA 216
Query: 61 LKQA 64
+K A
Sbjct: 217 IKTA 220
>gi|2677845|gb|AAC47810.1| ribonuclease H1 [Drosophila melanogaster]
Length = 333
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 49/64 (76%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V+V+TDG+C NG+ GA AGYGVYFG+N+ LN A V GRVTNN EIQ AIHA
Sbjct: 176 IDAEGYVIVYTDGSCIGNGRTGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHA 235
Query: 61 LKQA 64
+K A
Sbjct: 236 IKTA 239
>gi|17137476|ref|NP_477315.1| ribonuclease H1, isoform A [Drosophila melanogaster]
gi|7304133|gb|AAF59170.1| ribonuclease H1, isoform A [Drosophila melanogaster]
gi|19527995|gb|AAL90112.1| AT19436p [Drosophila melanogaster]
gi|220949756|gb|ACL87421.1| rnh1-PA [synthetic construct]
gi|220958970|gb|ACL92028.1| rnh1-PA [synthetic construct]
Length = 333
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 49/64 (76%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V+V+TDG+C NG+ GA AGYGVYFG+N+ LN A V GRVTNN EIQ AIHA
Sbjct: 176 IDAEGYVIVYTDGSCIGNGRAGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHA 235
Query: 61 LKQA 64
+K A
Sbjct: 236 IKTA 239
>gi|348518291|ref|XP_003446665.1| PREDICTED: ribonuclease H1-like isoform 1 [Oreochromis niloticus]
Length = 278
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 46/64 (71%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ GA AG GVY+G NNPLNVA ++ GR TN AEIQ A AL+QAK
Sbjct: 132 VVVYTDGCCSGNGQSGARAGIGVYWGCNNPLNVAERLQGRQTNQRAEIQAACRALEQAKQ 191
Query: 67 ANEK 70
N K
Sbjct: 192 NNIK 195
>gi|348518293|ref|XP_003446666.1| PREDICTED: ribonuclease H1-like isoform 2 [Oreochromis niloticus]
Length = 295
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 46/64 (71%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ GA AG GVY+G NNPLNVA ++ GR TN AEIQ A AL+QAK
Sbjct: 149 VVVYTDGCCSGNGQSGARAGIGVYWGCNNPLNVAERLQGRQTNQRAEIQAACRALEQAKQ 208
Query: 67 ANEK 70
N K
Sbjct: 209 NNIK 212
>gi|357604992|gb|EHJ64411.1| hypothetical protein KGM_00953 [Danaus plexippus]
Length = 323
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 46/64 (71%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D D +V VFTDGAC NGK GA AG GV++GE +PLN++ V+GR TNN EIQ A A
Sbjct: 171 LDEDGYVQVFTDGACSSNGKNGARAGLGVFWGEGHPLNISKPVSGRATNNCGEIQAATEA 230
Query: 61 LKQA 64
++ A
Sbjct: 231 IRTA 234
>gi|432947322|ref|XP_004083988.1| PREDICTED: ribonuclease H1-like isoform 1 [Oryzias latipes]
Length = 297
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 44/59 (74%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
VVV+TDG C NGK GA AG GVY+G N+PLNVA ++ GR TN AEIQ A AL+QAK
Sbjct: 144 VVVYTDGCCSCNGKAGARAGIGVYWGHNHPLNVAERLEGRQTNQRAEIQAACKALQQAK 202
>gi|432947324|ref|XP_004083989.1| PREDICTED: ribonuclease H1-like isoform 2 [Oryzias latipes]
Length = 304
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 44/59 (74%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
VVV+TDG C NGK GA AG GVY+G N+PLNVA ++ GR TN AEIQ A AL+QAK
Sbjct: 151 VVVYTDGCCSCNGKAGARAGIGVYWGHNHPLNVAERLEGRQTNQRAEIQAACKALQQAK 209
>gi|432947326|ref|XP_004083990.1| PREDICTED: ribonuclease H1-like isoform 3 [Oryzias latipes]
Length = 307
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 44/59 (74%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
VVV+TDG C NGK GA AG GVY+G N+PLNVA ++ GR TN AEIQ A AL+QAK
Sbjct: 154 VVVYTDGCCSCNGKAGARAGIGVYWGHNHPLNVAERLEGRQTNQRAEIQAACKALQQAK 212
>gi|47214632|emb|CAG01473.1| unnamed protein product [Tetraodon nigroviridis]
Length = 279
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 46/64 (71%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NGKVGA AG GVY+G N+PLNVA ++ GR TN AEIQ A AL+ AK
Sbjct: 128 VVVYTDGCCSANGKVGARAGIGVYWGLNHPLNVAERLPGRQTNQRAEIQAACRALELAKE 187
Query: 67 ANEK 70
N K
Sbjct: 188 QNIK 191
>gi|156717518|ref|NP_001096299.1| ribonuclease H1 [Xenopus (Silurana) tropicalis]
gi|134023904|gb|AAI35623.1| LOC100124876 protein [Xenopus (Silurana) tropicalis]
Length = 299
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 46/62 (74%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C +NG++ A AG GVY+G N+PLN+A K+ GR TN AEIQ A AL+ AKS
Sbjct: 151 VVVYTDGCCSQNGRLKARAGIGVYWGLNHPLNLAEKLEGRQTNQRAEIQAACRALELAKS 210
Query: 67 AN 68
N
Sbjct: 211 QN 212
>gi|213511842|ref|NP_001135083.1| Ribonuclease H1 [Salmo salar]
gi|209738530|gb|ACI70134.1| Ribonuclease H1 [Salmo salar]
Length = 291
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 45/64 (70%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NGK GA AG GVY+G ++PLNVA + GR TN AE+Q A AL+QAK
Sbjct: 145 VVVYTDGCCSGNGKAGARAGIGVYWGRDHPLNVAEPLDGRQTNQRAELQAACKALEQAKE 204
Query: 67 ANEK 70
N K
Sbjct: 205 MNIK 208
>gi|332373760|gb|AEE62021.1| unknown [Dendroctonus ponderosae]
Length = 266
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D +VVV+TDGAC NGK A AG G +F + NP+N++ V GR TNN AEIQ I ALK
Sbjct: 115 DGYVVVYTDGACENNGKPNAKAGVGAWFSDGNPMNISEPVVGRPTNNTAEIQAPIEALKL 174
Query: 64 AKSAN-EKVKL 73
KS +KVK+
Sbjct: 175 LKSQGFKKVKI 185
>gi|147898893|ref|NP_001084684.1| ribonuclease H1 [Xenopus laevis]
gi|46249528|gb|AAH68735.1| MGC81203 protein [Xenopus laevis]
Length = 300
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 45/62 (72%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV+TDG C NG+V A AG GVY+G+ +PLN+A K+ GR TN AEIQ A AL+QAK+
Sbjct: 152 AVVYTDGCCSGNGRVKARAGIGVYWGQGHPLNLAEKLEGRQTNQRAEIQAACRALEQAKA 211
Query: 67 AN 68
N
Sbjct: 212 QN 213
>gi|225707592|gb|ACO09642.1| Ribonuclease H1 [Osmerus mordax]
Length = 306
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 46/64 (71%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG++GA AG GVY+G ++PLNVA + GR TN AE+Q A AL+QAK
Sbjct: 152 VVVYTDGCCSGNGRIGARAGIGVYWGRDHPLNVAEPLDGRQTNQRAELQAACKALEQAKE 211
Query: 67 ANEK 70
N K
Sbjct: 212 MNIK 215
>gi|340711175|ref|XP_003394155.1| PREDICTED: ribonuclease H1-like isoform 1 [Bombus terrestris]
gi|340711177|ref|XP_003394156.1| PREDICTED: ribonuclease H1-like isoform 2 [Bombus terrestris]
Length = 283
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 46/67 (68%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D D V V+TDGAC NG+ A AG GV+FG+N+PLNV+ V GR TNNNAEI A
Sbjct: 132 VDSDGFVNVYTDGACSANGRENAKAGIGVWFGDNHPLNVSEAVVGRATNNNAEINAVTVA 191
Query: 61 LKQAKSA 67
+QA+ A
Sbjct: 192 ARQARKA 198
>gi|380023892|ref|XP_003695743.1| PREDICTED: ribonuclease H1-like [Apis florea]
Length = 238
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 46/67 (68%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D D +V V+TDGAC NG A AG GV+FG+N+PLN++ V GR TNN AEIQ A
Sbjct: 88 IDNDGYVNVYTDGACSSNGHKNAQAGIGVWFGDNHPLNISKAVVGRATNNMAEIQAVTIA 147
Query: 61 LKQAKSA 67
KQAK A
Sbjct: 148 AKQAKKA 154
>gi|328792978|ref|XP_395566.3| PREDICTED: ribonuclease H1 [Apis mellifera]
Length = 278
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 45/67 (67%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D D +V V+TDGAC NG A AG GV+FG N+PLN++ V GR TNN AEIQ A
Sbjct: 128 IDNDGYVNVYTDGACSLNGHKNAQAGIGVWFGNNHPLNISKAVIGRATNNMAEIQAVTIA 187
Query: 61 LKQAKSA 67
KQAK A
Sbjct: 188 AKQAKKA 194
>gi|307183362|gb|EFN70220.1| Ribonuclease H1 [Camponotus floridanus]
Length = 296
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D D++V VFTDGAC NG A AG GV+F +N+PLNV+ V GR TNN AEIQ A
Sbjct: 143 VDEDDYVNVFTDGACSSNGYKNAQAGIGVWFRDNHPLNVSQPVVGRPTNNMAEIQAVTVA 202
Query: 61 LKQAKSANEKVKLK 74
+QAK A K KLK
Sbjct: 203 ARQAKKAGIK-KLK 215
>gi|189233976|ref|XP_001810667.1| PREDICTED: similar to GA21286-PA [Tribolium castaneum]
gi|270014569|gb|EFA11017.1| hypothetical protein TcasGA2_TC004604 [Tribolium castaneum]
Length = 231
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 46/61 (75%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
++V V+TDGAC NG+ GA AG GV+FG+N+PLNV+ V G+ TNN AEIQ I A++ A
Sbjct: 82 DYVTVYTDGACENNGREGAKAGIGVWFGDNHPLNVSKPVKGKATNNAAEIQACICAVQIA 141
Query: 65 K 65
+
Sbjct: 142 R 142
>gi|259089333|ref|NP_001158704.1| Ribonuclease H1 [Oncorhynchus mykiss]
gi|225704990|gb|ACO08341.1| Ribonuclease H1 [Oncorhynchus mykiss]
Length = 280
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 45/64 (70%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NGK GA AG GVY+G ++PLNVA + GR TN AE+Q A AL+QAK
Sbjct: 134 VVVYTDGCCSGNGKPGARAGIGVYWGRDHPLNVAEPLDGRQTNQRAELQAACKALEQAKE 193
Query: 67 ANEK 70
+ K
Sbjct: 194 MDIK 197
>gi|332024086|gb|EGI64303.1| Ribonuclease H1 [Acromyrmex echinatior]
Length = 292
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D D +V VFTDGAC NG A AG GV+F +N+PLN++ V GR TNN AEIQ A
Sbjct: 140 VDEDGYVNVFTDGACSSNGYKNARAGIGVWFRDNHPLNISEPVNGRPTNNMAEIQAVTVA 199
Query: 61 LKQAKSANEKVKLK 74
++QAK A K KLK
Sbjct: 200 VRQAKKAGIK-KLK 212
>gi|350405851|ref|XP_003487571.1| PREDICTED: ribonuclease H1-like [Bombus impatiens]
Length = 280
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 46/67 (68%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D D V V+TDGAC NG+ A AG GV+FG+++PLNV+ V GR TNNNAEI A
Sbjct: 129 VDGDGFVNVYTDGACTANGRKNAKAGIGVWFGDSHPLNVSEAVVGRATNNNAEIMAVTVA 188
Query: 61 LKQAKSA 67
+QA+ A
Sbjct: 189 ARQARKA 195
>gi|50540386|ref|NP_001002659.1| ribonuclease H1 [Danio rerio]
gi|49900309|gb|AAH76457.1| Ribonuclease H1 [Danio rerio]
gi|182891492|gb|AAI64625.1| Rnaseh1 protein [Danio rerio]
Length = 276
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 45/64 (70%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NGK GA AG GVY+G ++P NVA ++ GR TN AE+Q A AL+QAK
Sbjct: 130 VVVYTDGCCSGNGKHGARAGIGVYWGRDHPRNVAERLPGRQTNQRAELQAACKALEQAKE 189
Query: 67 ANEK 70
N K
Sbjct: 190 MNFK 193
>gi|148233804|ref|NP_001090055.1| ribonuclease H1 [Xenopus laevis]
gi|66911791|gb|AAH97857.1| MGC115609 protein [Xenopus laevis]
Length = 292
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VV+TDG C +NG++ A AG GVY+G +PLN+A ++ GR TN AEIQ A AL+QA
Sbjct: 143 DSAVVYTDGCCSQNGRLKAQAGIGVYWGPGHPLNLAERLEGRQTNQRAEIQAACRALEQA 202
Query: 65 KSAN 68
++ N
Sbjct: 203 QAKN 206
>gi|410916019|ref|XP_003971484.1| PREDICTED: ribonuclease H1-like [Takifugu rubripes]
Length = 279
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 20/125 (16%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G N+PLNVA +++GR TN AEIQ A AL+ AK
Sbjct: 128 VVVYTDGCCTANGRANARAGIGVYWGLNHPLNVAERLSGRQTNQRAEIQAACRALELAK- 186
Query: 67 ANEKVKLKRSYNDTH-----AQKKVRNVSSVAMR------IAQKVDYI-------SHDVI 108
++ +K Y D+ + V+N + R I K D++ DV+
Sbjct: 187 -DQSIKKLVLYTDSKFTINGVTRWVKNWKKNSWRLKSGGPITNKEDFMKLDRLNAELDVV 245
Query: 109 SVGIP 113
+ IP
Sbjct: 246 WIHIP 250
>gi|328726334|ref|XP_003248854.1| PREDICTED: hypothetical protein LOC100570279 [Acyrthosiphon pisum]
Length = 401
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+ +N VVV+TDGAC NG GA AG GV+FG ++PLN++ +V G TNNNAEI I A
Sbjct: 251 FNEENQVVVYTDGACSNNGYKGACAGAGVWFGNDHPLNLSIRVPGTQTNNNAEIFSTIKA 310
Query: 61 LKQAKSA 67
+++ S
Sbjct: 311 IERVYST 317
>gi|322791341|gb|EFZ15831.1| hypothetical protein SINV_13418 [Solenopsis invicta]
Length = 154
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V VFTDGAC NG A AG GV+F +N+PLNV+ V GR TNN AEIQ A
Sbjct: 8 VDEEGYVNVFTDGACSSNGYKNARAGIGVWFKDNHPLNVSKPVEGRCTNNMAEIQAVTVA 67
Query: 61 LKQAKSANEKVKLK 74
+QAK A K KLK
Sbjct: 68 ARQAKKAGIK-KLK 80
>gi|328707186|ref|XP_001948714.2| PREDICTED: hypothetical protein LOC100160388 [Acyrthosiphon pisum]
Length = 362
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+ +N VVV+TDGAC NG GA AG GV+FG ++PLN++ +V G TNNNAEI I A
Sbjct: 212 FNEENQVVVYTDGACSNNGYKGACAGAGVWFGNDHPLNLSIRVPGTQTNNNAEIFSTIKA 271
Query: 61 LKQAKSA 67
+++ S
Sbjct: 272 IERVYST 278
>gi|339257342|ref|XP_003370041.1| ubiquitin-conjugating enzyme E22 [Trichinella spiralis]
gi|316965396|gb|EFV50118.1| ubiquitin-conjugating enzyme E22 [Trichinella spiralis]
Length = 248
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
+ ++ V +TDGAC NGK+GA AG GVY+GEN+P N++ + G TNN AEI+ A+
Sbjct: 109 EKNSFAVCYTDGACVNNGKLGARAGIGVYWGENDPRNISEPLKGLQTNNRAEIEACSRAI 168
Query: 62 KQAK 65
+QAK
Sbjct: 169 EQAK 172
>gi|417398338|gb|JAA46202.1| Putative ribonuclease h1-like protein [Desmodus rotundus]
Length = 284
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
HVVV+TDG C RNG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 136 EHVVVYTDGCCSRNGRRRPRAGIGVYWGPGHPLNVGVRLPGRQTNQRAEIHAACRAIEQA 195
Query: 65 KSAN 68
++ +
Sbjct: 196 RAQD 199
>gi|390345185|ref|XP_789772.2| PREDICTED: ribonuclease H1-like [Strongylocentrotus purpuratus]
Length = 220
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 13/99 (13%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+++VV+TDGAC NG GA AG GVY+G+N+PLN + ++ G+ TN AE+ A+ AL+Q
Sbjct: 68 DNLVVYTDGACSHNGFSGAKAGLGVYWGDNHPLNTSARLEGKQTNQRAELTAALRALEQ- 126
Query: 65 KSANEKVKLKRSYNDTHAQKKVRNVSSVAMRIAQKVDYI 103
N+ H ++KV + I D+I
Sbjct: 127 ------------INEHHKRRKVTLYTDSKYTINCVTDWI 153
>gi|194220992|ref|XP_001502934.2| PREDICTED: ribonuclease H1-like [Equus caballus]
Length = 359
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 15/118 (12%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QAK+
Sbjct: 208 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKA 267
Query: 67 AN-EKVKLKRSYNDT-----------HAQKKVRNVSSVAMRIAQKVDYISHDVISVGI 112
N K+ L Y D+ KK +S + K D++ D ++ G+
Sbjct: 268 QNINKLVL---YTDSMFTINGITNWVQGWKKNGWRTSTGKEVTNKEDFVELDRLTQGM 322
>gi|327282766|ref|XP_003226113.1| PREDICTED: ribonuclease H1-like isoform 1 [Anolis carolinensis]
Length = 323
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
+ VV+TDG C NGK A AG GVY+G ++PLN + ++ GR TN AEI A A++QAK
Sbjct: 178 YTVVYTDGCCSSNGKSKARAGTGVYWGPSHPLNSSERLPGRQTNQRAEIHAACKAIEQAK 237
Query: 66 SAN 68
S N
Sbjct: 238 SQN 240
>gi|327282768|ref|XP_003226114.1| PREDICTED: ribonuclease H1-like isoform 2 [Anolis carolinensis]
Length = 300
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
+ VV+TDG C NGK A AG GVY+G ++PLN + ++ GR TN AEI A A++QAK
Sbjct: 155 YTVVYTDGCCSSNGKSKARAGTGVYWGPSHPLNSSERLPGRQTNQRAEIHAACKAIEQAK 214
Query: 66 SAN 68
S N
Sbjct: 215 SQN 217
>gi|334312524|ref|XP_001381337.2| PREDICTED: ribonuclease H1-like [Monodelphis domestica]
Length = 342
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 62/118 (52%), Gaps = 15/118 (12%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV+TDG C NG+ A AG GVY+G +PLNVA ++ GR TN AEI A A++QAK+
Sbjct: 194 AVVYTDGCCSSNGRRKARAGIGVYWGPGHPLNVADRLLGRQTNQRAEIHAACKAIEQAKN 253
Query: 67 AN-EKVKLKRSYNDT-----------HAQKKVRNVSSVAMRIAQKVDYISHDVISVGI 112
N K+ L Y D+ KK +S + K D++ D ++ GI
Sbjct: 254 QNINKLVL---YTDSMFTINGITSWIKDWKKNGWKTSTGKEVINKEDFVKLDTLTQGI 308
>gi|307214302|gb|EFN89389.1| Ribonuclease H1 [Harpegnathos saltator]
Length = 235
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 44/66 (66%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D D +V VFTDGAC NG A AG GV+F +++PLNV+ V GR TNN AEIQ A
Sbjct: 79 DKDGYVNVFTDGACSSNGYKNARAGIGVWFQDHHPLNVSQPVEGRPTNNMAEIQAVTVAA 138
Query: 62 KQAKSA 67
+QAK A
Sbjct: 139 RQAKKA 144
>gi|391345438|ref|XP_003746993.1| PREDICTED: ribonuclease H1-like [Metaseiulus occidentalis]
Length = 283
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+TDGAC NG GA AG GVY+G+ +P NV+ + G+ TNN AEIQ A A++QAK
Sbjct: 135 VVYTDGACSGNGMAGAKAGIGVYWGDGDPRNVSEPLKGKPTNNRAEIQAATRAIQQAKEQ 194
Query: 68 N-EKVKLK 74
E+V+++
Sbjct: 195 GYEEVEIR 202
>gi|344280294|ref|XP_003411919.1| PREDICTED: ribonuclease H1-like [Loxodonta africana]
Length = 287
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 42/62 (67%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+KQAK+
Sbjct: 141 VVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACRAIKQAKA 200
Query: 67 AN 68
N
Sbjct: 201 QN 202
>gi|403182973|gb|EJY57760.1| AAEL017101-PA [Aedes aegypti]
Length = 320
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 42/64 (65%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D D +V V+TDG+C NG A AG GVYFGE + LN + V+GR TNN EIQ A A+
Sbjct: 162 DEDGYVHVYTDGSCEGNGTAAACAGLGVYFGEGHALNTSQPVSGRATNNCGEIQAASLAI 221
Query: 62 KQAK 65
+ AK
Sbjct: 222 RLAK 225
>gi|336088093|dbj|BAK39906.1| ribonuclease H1 [Cricetulus griseus]
Length = 285
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGFRLPGRQTNQRAEIHAACKAIMQAKA 198
Query: 67 AN 68
N
Sbjct: 199 QN 200
>gi|431911810|gb|ELK13954.1| Ribonuclease H1 [Pteropus alecto]
Length = 285
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
H +V+TDG C RNG+ A AG GVY+G +PLN++ ++ GR TN AEI A A++QA
Sbjct: 137 EHAIVYTDGCCSRNGRHRARAGIGVYWGPGHPLNISVRLPGRQTNQRAEIHAACKAIEQA 196
Query: 65 KS 66
++
Sbjct: 197 RA 198
>gi|354495311|ref|XP_003509774.1| PREDICTED: ribonuclease H1 [Cricetulus griseus]
gi|344254547|gb|EGW10651.1| Ribonuclease H1 [Cricetulus griseus]
Length = 285
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGFRLPGRQTNQRAEIHAACKAIMQAKA 198
Query: 67 AN 68
N
Sbjct: 199 QN 200
>gi|281341314|gb|EFB16898.1| hypothetical protein PANDA_019509 [Ailuropoda melanoleuca]
Length = 241
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLN+ ++ GR TN AEI A A++QAK+
Sbjct: 95 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNIGIRLPGRQTNQRAEIHAACKAIEQAKA 154
Query: 67 ANEKVKLKRSYNDT-----------HAQKKVRNVSSVAMRIAQKVDYISHDVISVGI 112
N +K Y D+ KK +S + K D+++ + ++ G+
Sbjct: 155 QN--IKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDFVALEQLTQGM 209
>gi|395852160|ref|XP_003798608.1| PREDICTED: ribonuclease H1 [Otolemur garnettii]
Length = 287
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 139 DSVVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 198
Query: 65 KSAN 68
K+ N
Sbjct: 199 KAQN 202
>gi|301787875|ref|XP_002929354.1| PREDICTED: ribonuclease H1-like [Ailuropoda melanoleuca]
Length = 285
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLN+ ++ GR TN AEI A A++QAK+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNIGIRLPGRQTNQRAEIHAACKAIEQAKA 198
Query: 67 ANEKVKLKRSYNDT-----------HAQKKVRNVSSVAMRIAQKVDYISHDVISVGI 112
N +K Y D+ KK +S + K D+++ + ++ G+
Sbjct: 199 QN--IKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDFVALEQLTQGM 253
>gi|312374134|gb|EFR21765.1| hypothetical protein AND_16414 [Anopheles darlingi]
Length = 735
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D D +V V+TDG+C NGK A+AG GVYF E + LN + V+GR TNN EIQ A A+
Sbjct: 538 DQDGYVHVYTDGSCEGNGKPNAAAGLGVYFDEGHALNTSKPVSGRATNNCGEIQAASTAI 597
Query: 62 KQAK 65
+ A+
Sbjct: 598 RLAR 601
>gi|326916464|ref|XP_003204527.1| PREDICTED: ribonuclease H1-like [Meleagris gallopavo]
Length = 253
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV+TDG C NG+ A AG GVY+G ++PLN++ ++ GR TN AEI A A++QAKS
Sbjct: 107 AVVYTDGCCSGNGRNRARAGIGVYWGPDHPLNISERLPGRQTNQRAEIHAACKAIEQAKS 166
Query: 67 AN 68
N
Sbjct: 167 QN 168
>gi|440911204|gb|ELR60910.1| Ribonuclease H1, partial [Bos grunniens mutus]
Length = 253
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 132 DSVVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 191
Query: 65 KSAN 68
K+ +
Sbjct: 192 KAQD 195
>gi|226246542|ref|NP_035405.2| ribonuclease H1 [Mus musculus]
Length = 285
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAKA 198
Query: 67 AN-EKVKLKRSYNDT-----------HAQKKVRNVSSVAMRIAQKVDYISHDVISVGI 112
N K+ L Y D+ KK +S + K D++ D ++ G+
Sbjct: 199 QNISKLVL---YTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGM 253
>gi|348558346|ref|XP_003464979.1| PREDICTED: ribonuclease H1-like [Cavia porcellus]
Length = 294
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 136 DSVVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 195
Query: 65 KSAN 68
K+ +
Sbjct: 196 KAQD 199
>gi|387018090|gb|AFJ51163.1| Ribonuclease H1-like [Crotalus adamanteus]
Length = 294
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 44/64 (68%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
++V V+TDG C NG+ A AG GVY+G ++PLN + ++ GR TN AEI A A++QA
Sbjct: 146 DYVAVYTDGCCSSNGRQAARAGTGVYWGPDHPLNNSERLHGRQTNQRAEIHAACKAIEQA 205
Query: 65 KSAN 68
KS N
Sbjct: 206 KSQN 209
>gi|114050737|ref|NP_001039970.1| ribonuclease H1 [Bos taurus]
gi|86438465|gb|AAI12855.1| Ribonuclease H1 pseudogene 1 [Bos taurus]
gi|296484317|tpg|DAA26432.1| TPA: ribonuclease H1 [Bos taurus]
Length = 280
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 132 DSVVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 191
Query: 65 KSAN 68
K+ +
Sbjct: 192 KAQD 195
>gi|61556933|ref|NP_001013115.1| ribonuclease H1 [Rattus norvegicus]
gi|81909480|sp|Q5BK46.1|RNH1_RAT RecName: Full=Ribonuclease H1; Short=RNase H1
gi|60688306|gb|AAH91209.1| Ribonuclease H1 [Rattus norvegicus]
gi|149051044|gb|EDM03217.1| ribonuclease H1, isoform CRA_a [Rattus norvegicus]
Length = 285
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAITQAKA 198
Query: 67 AN 68
N
Sbjct: 199 QN 200
>gi|224048680|ref|XP_002197364.1| PREDICTED: ribonuclease H1 [Taeniopygia guttata]
Length = 299
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VV+TDG C NG+ A AG GVY+G +PLN + ++ GR TN AEI A A++QA
Sbjct: 151 DFAVVYTDGCCTSNGRSRARAGIGVYWGPGHPLNTSERLPGRQTNQRAEIHAACRAIEQA 210
Query: 65 KSANEK 70
K+ N K
Sbjct: 211 KTQNIK 216
>gi|18044436|gb|AAH19411.1| Ribonuclease H1 [Mus musculus]
Length = 285
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAKA 198
Query: 67 AN-EKVKLKRSYNDT-----------HAQKKVRNVSSVAMRIAQKVDYISHDVISVGI 112
N K+ L Y D+ KK +S + K D++ D ++ G+
Sbjct: 199 QNISKLVL---YTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGM 253
>gi|13878717|sp|O70338.1|RNH1_MOUSE RecName: Full=Ribonuclease H1; Short=RNase H1
gi|2935418|gb|AAC78562.1| ribonuclease H1 [Mus musculus]
Length = 285
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAKA 198
Query: 67 AN-EKVKLKRSYNDT-----------HAQKKVRNVSSVAMRIAQKVDYISHDVISVGI 112
N K+ L Y D+ KK +S + K D++ D ++ G+
Sbjct: 199 QNISKLVL---YTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGM 253
>gi|148705006|gb|EDL36953.1| ribonuclease H1, isoform CRA_a [Mus musculus]
Length = 286
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 140 VIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAKA 199
Query: 67 AN-EKVKLKRSYNDT-----------HAQKKVRNVSSVAMRIAQKVDYISHDVISVGI 112
N K+ L Y D+ KK +S + K D++ D ++ G+
Sbjct: 200 QNISKLVL---YTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGM 254
>gi|444721603|gb|ELW62330.1| Ribonuclease H1, partial [Tupaia chinensis]
Length = 254
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 98 DFVVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGVRLPGRQTNQRAEIHAACKAIEQA 157
Query: 65 KSAN 68
++ N
Sbjct: 158 RAQN 161
>gi|291409767|ref|XP_002721174.1| PREDICTED: ribonuclease H1 [Oryctolagus cuniculus]
Length = 286
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLN++ ++ GR TN AEI A A++QAK+
Sbjct: 140 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNLSIRLPGRQTNQRAEIHAACKAIEQAKA 199
Query: 67 AN 68
N
Sbjct: 200 QN 201
>gi|45384532|ref|NP_990329.1| ribonuclease H1 precursor [Gallus gallus]
gi|516686|dbj|BAA05382.1| unnamed protein product [Gallus gallus]
Length = 293
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV+TDG C NG+ A AG GVY+G +PLN++ ++ GR TN AEI A A++QAKS
Sbjct: 147 AVVYTDGCCSGNGRNRARAGIGVYWGPGHPLNISERLPGRQTNQRAEIHAACKAIEQAKS 206
Query: 67 ANEK 70
N K
Sbjct: 207 QNIK 210
>gi|73979924|ref|XP_532858.2| PREDICTED: ribonuclease H1 [Canis lupus familiaris]
Length = 285
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 13/117 (11%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +P NV ++ GR TN AEI A A++QAK+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPWNVGIRLPGRQTNQRAEIHAACKAIEQAKA 198
Query: 67 ANEKVKLKRSYNDT-----------HAQKKVRNVSSVAMRIAQKVDYISHDVISVGI 112
N +K Y D+ KK +S + K D+++ + ++ G+
Sbjct: 199 QN--IKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDFVALEQLTQGM 253
>gi|410955906|ref|XP_003984589.1| PREDICTED: ribonuclease H1 [Felis catus]
Length = 277
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ A AG GVY+G +PLN+ ++ GR TN AEI A A++QA
Sbjct: 129 DFVVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNLGIRLPGRQTNQRAEIHAACKAIEQA 188
Query: 65 KSANEK 70
K+ N K
Sbjct: 189 KAQNIK 194
>gi|351714605|gb|EHB17524.1| Ribonuclease H1 [Heterocephalus glaber]
Length = 308
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ ++V+TDG C NG+ A AG GVY+G ++PLNV ++ GR TN AEI A A++QA
Sbjct: 136 DSIIVYTDGCCSSNGRRRARAGIGVYWGPSHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 195
Query: 65 KSAN 68
++ N
Sbjct: 196 RAQN 199
>gi|148231538|ref|NP_001089336.1| uncharacterized protein LOC734386 [Xenopus laevis]
gi|62027455|gb|AAH92118.1| MGC115038 protein [Xenopus laevis]
Length = 204
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
V+TDG C RNG+ GA+ G GVY+G N+ NV+ ++ GR TN AEI+ A A KQA++ N
Sbjct: 63 VYTDGCCSRNGQYGANGGIGVYWGPNDSRNVSARLEGRQTNQRAEIEAAYTAAKQARNDN 122
>gi|355716669|gb|AES05685.1| ribonuclease H1 [Mustela putorius furo]
Length = 284
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLN+ ++ GR TN AEI A A++QAK+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNIGIRLPGRQTNQRAEIHAACKAIEQAKA 198
Query: 67 ANEK 70
N K
Sbjct: 199 QNIK 202
>gi|332254936|ref|XP_003276592.1| PREDICTED: ribonuclease H1 [Nomascus leucogenys]
Length = 258
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 140 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 199
Query: 65 KSAN 68
K+ N
Sbjct: 200 KTQN 203
>gi|383872358|ref|NP_001244787.1| ribonuclease H1 precursor [Macaca mulatta]
gi|380811294|gb|AFE77522.1| ribonuclease H1 [Macaca mulatta]
gi|383408989|gb|AFH27708.1| ribonuclease H1 [Macaca mulatta]
gi|384946204|gb|AFI36707.1| ribonuclease H1 [Macaca mulatta]
Length = 286
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSAN 68
K+ N
Sbjct: 198 KAQN 201
>gi|426334587|ref|XP_004028827.1| PREDICTED: ribonuclease H1, partial [Gorilla gorilla gorilla]
Length = 211
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 56 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 115
Query: 65 KSAN 68
K+ N
Sbjct: 116 KTQN 119
>gi|395507260|ref|XP_003757945.1| PREDICTED: ribonuclease H1 [Sarcophilus harrisii]
Length = 206
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QAK+
Sbjct: 58 AVVYTDGCCSSNGRRKARAGIGVYWGPGHPLNVGDRLPGRQTNQRAEIHAACKAIEQAKN 117
Query: 67 AN 68
N
Sbjct: 118 QN 119
>gi|334330218|ref|XP_001381443.2| PREDICTED: ribonuclease H1-like [Monodelphis domestica]
Length = 259
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV+TDG C GK AG GVY+G +PLNV ++TGR TN AEI A AL+QAK
Sbjct: 113 AVVYTDGCCSSKGK-KPRAGIGVYWGPGHPLNVGDRLTGRQTNQRAEIHAACKALEQAKD 171
Query: 67 ANEKVKLKRSY---------NDTHAQKKVRNVSSVAMRIAQKVDYISHDVISVGI 112
N + +Y N KK +S +++ K D++ D ++ GI
Sbjct: 172 QNINKLVLYTYSMCTVNGITNRIKDWKKNGWKTSAGKKVSNKDDFVKLDRLTRGI 226
>gi|54696208|gb|AAV38476.1| ribonuclease H1 [Homo sapiens]
Length = 286
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSAN 68
K+ N
Sbjct: 198 KTQN 201
>gi|402889986|ref|XP_003908276.1| PREDICTED: ribonuclease H1 [Papio anubis]
Length = 286
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSAN 68
K+ N
Sbjct: 198 KAQN 201
>gi|61372889|gb|AAX43931.1| ribonuclease H1 [synthetic construct]
Length = 287
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSAN 68
K+ N
Sbjct: 198 KTQN 201
>gi|54696206|gb|AAV38475.1| ribonuclease H1 [synthetic construct]
gi|61366338|gb|AAX42845.1| ribonuclease H1 pseudogene 1 [synthetic construct]
Length = 287
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSAN 68
K+ N
Sbjct: 198 KTQN 201
>gi|3043447|emb|CAA11835.1| RNase HII [Homo sapiens]
Length = 286
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSAN 68
K+ N
Sbjct: 198 KTQN 201
>gi|355569653|gb|EHH25473.1| hypothetical protein EGK_21266 [Macaca mulatta]
Length = 286
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSAN 68
K+ N
Sbjct: 198 KAQN 201
>gi|49456597|emb|CAG46619.1| RNASEH1 [Homo sapiens]
Length = 286
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSAN 68
K+ N
Sbjct: 198 KTQN 201
>gi|355765002|gb|EHH62348.1| hypothetical protein EGM_20653 [Macaca fascicularis]
Length = 286
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSAN 68
K+ N
Sbjct: 198 KAQN 201
>gi|426222090|ref|XP_004005236.1| PREDICTED: ribonuclease H1 [Ovis aries]
Length = 262
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 42/62 (67%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 137 DSVVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 196
Query: 65 KS 66
K+
Sbjct: 197 KA 198
>gi|21359816|ref|NP_002927.2| ribonuclease H1 precursor [Homo sapiens]
gi|13878716|sp|O60930.2|RNH1_HUMAN RecName: Full=Ribonuclease H1; Short=RNase H1; AltName:
Full=Ribonuclease H type II
gi|3004981|gb|AAC09261.1| ribonuclease H type II [Homo sapiens]
gi|12804229|gb|AAH02973.1| Ribonuclease H1 [Homo sapiens]
gi|60655541|gb|AAX32334.1| ribonuclease H1 [synthetic construct]
gi|62420309|gb|AAX82026.1| unknown [Homo sapiens]
gi|119621466|gb|EAX01061.1| ribonuclease H1 [Homo sapiens]
gi|123984355|gb|ABM83523.1| ribonuclease H1 [synthetic construct]
gi|123998297|gb|ABM86750.1| ribonuclease H1 [synthetic construct]
gi|193786833|dbj|BAG52156.1| unnamed protein product [Homo sapiens]
gi|311347258|gb|ADP90574.1| ribonuclease H1 [Homo sapiens]
gi|311347260|gb|ADP90575.1| ribonuclease H1 [Homo sapiens]
gi|311347262|gb|ADP90576.1| ribonuclease H1 [Homo sapiens]
gi|311347264|gb|ADP90577.1| ribonuclease H1 [Homo sapiens]
gi|311347266|gb|ADP90578.1| ribonuclease H1 [Homo sapiens]
gi|311347268|gb|ADP90579.1| ribonuclease H1 [Homo sapiens]
gi|311347270|gb|ADP90580.1| ribonuclease H1 [Homo sapiens]
gi|311347272|gb|ADP90581.1| ribonuclease H1 [Homo sapiens]
gi|311347274|gb|ADP90582.1| ribonuclease H1 [Homo sapiens]
gi|311347276|gb|ADP90583.1| ribonuclease H1 [Homo sapiens]
gi|311347278|gb|ADP90584.1| ribonuclease H1 [Homo sapiens]
gi|311347280|gb|ADP90585.1| ribonuclease H1 [Homo sapiens]
gi|311347282|gb|ADP90586.1| ribonuclease H1 [Homo sapiens]
gi|311347284|gb|ADP90587.1| ribonuclease H1 [Homo sapiens]
gi|311347286|gb|ADP90588.1| ribonuclease H1 [Homo sapiens]
gi|311347288|gb|ADP90589.1| ribonuclease H1 [Homo sapiens]
gi|311347290|gb|ADP90590.1| ribonuclease H1 [Homo sapiens]
gi|311347292|gb|ADP90591.1| ribonuclease H1 [Homo sapiens]
gi|311347294|gb|ADP90592.1| ribonuclease H1 [Homo sapiens]
gi|311347296|gb|ADP90593.1| ribonuclease H1 [Homo sapiens]
gi|311347298|gb|ADP90594.1| ribonuclease H1 [Homo sapiens]
gi|311347300|gb|ADP90595.1| ribonuclease H1 [Homo sapiens]
gi|311347302|gb|ADP90596.1| ribonuclease H1 [Homo sapiens]
gi|311347304|gb|ADP90597.1| ribonuclease H1 [Homo sapiens]
gi|311347306|gb|ADP90598.1| ribonuclease H1 [Homo sapiens]
gi|311347308|gb|ADP90599.1| ribonuclease H1 [Homo sapiens]
gi|311347310|gb|ADP90600.1| ribonuclease H1 [Homo sapiens]
gi|311347312|gb|ADP90601.1| ribonuclease H1 [Homo sapiens]
gi|311347314|gb|ADP90602.1| ribonuclease H1 [Homo sapiens]
gi|311347316|gb|ADP90603.1| ribonuclease H1 [Homo sapiens]
gi|311347318|gb|ADP90604.1| ribonuclease H1 [Homo sapiens]
gi|311347320|gb|ADP90605.1| ribonuclease H1 [Homo sapiens]
gi|311347322|gb|ADP90606.1| ribonuclease H1 [Homo sapiens]
gi|311347324|gb|ADP90607.1| ribonuclease H1 [Homo sapiens]
gi|311347326|gb|ADP90608.1| ribonuclease H1 [Homo sapiens]
gi|311347328|gb|ADP90609.1| ribonuclease H1 [Homo sapiens]
gi|311347330|gb|ADP90610.1| ribonuclease H1 [Homo sapiens]
gi|311347332|gb|ADP90611.1| ribonuclease H1 [Homo sapiens]
gi|311347334|gb|ADP90612.1| ribonuclease H1 [Homo sapiens]
gi|311347336|gb|ADP90613.1| ribonuclease H1 [Homo sapiens]
Length = 286
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSAN 68
K+ N
Sbjct: 198 KTQN 201
>gi|2935442|gb|AAC78563.1| ribonuclease H1 [Homo sapiens]
gi|2935444|gb|AAC78564.1| ribonuclease H1 [Homo sapiens]
Length = 286
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSAN 68
K+ N
Sbjct: 198 KTQN 201
>gi|114575921|ref|XP_001150506.1| PREDICTED: ribonuclease H1 isoform 2 [Pan troglodytes]
gi|397471807|ref|XP_003807469.1| PREDICTED: ribonuclease H1 [Pan paniscus]
gi|410214322|gb|JAA04380.1| ribonuclease H1 [Pan troglodytes]
gi|410253442|gb|JAA14688.1| ribonuclease H1 [Pan troglodytes]
gi|410298660|gb|JAA27930.1| ribonuclease H1 [Pan troglodytes]
gi|410334637|gb|JAA36265.1| ribonuclease H1 [Pan troglodytes]
Length = 286
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSAN 68
K+ N
Sbjct: 198 KTQN 201
>gi|449283665|gb|EMC90270.1| Ribonuclease H1, partial [Columba livia]
Length = 256
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 42/64 (65%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV+TDG C NG+ A AG GVY+G +PLN + ++ GR TN AEI A A++QAKS
Sbjct: 110 AVVYTDGCCSGNGRNRARAGIGVYWGPGHPLNTSERLPGRQTNQRAEIHAACKAIEQAKS 169
Query: 67 ANEK 70
N K
Sbjct: 170 QNIK 173
>gi|343887422|ref|NP_001230610.1| ribonuclease H1 [Sus scrofa]
Length = 287
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A AL+ AK+
Sbjct: 141 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKALELAKA 200
Query: 67 AN 68
N
Sbjct: 201 QN 202
>gi|345485265|ref|XP_001599895.2| PREDICTED: ribonuclease H1 [Nasonia vitripennis]
Length = 302
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + + V+TDGAC NG+ A AG GV+F E N NV+ V GR TNN AEIQ A
Sbjct: 126 IDSNGYTEVYTDGACSSNGRRNAKAGIGVWFSERNAYNVSQPVDGRATNNIAEIQAVTIA 185
Query: 61 LKQAKSANEKVKLK 74
QA+ A K KLK
Sbjct: 186 ASQAQKAGIK-KLK 198
>gi|26352958|dbj|BAC40109.1| unnamed protein product [Mus musculus]
Length = 153
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 7 VIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAKA 66
Query: 67 AN 68
N
Sbjct: 67 QN 68
>gi|403297220|ref|XP_003939475.1| PREDICTED: ribonuclease H1 [Saimiri boliviensis boliviensis]
Length = 284
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 136 DSVVVYTDGCCCSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 195
Query: 65 KSAN 68
K+ N
Sbjct: 196 KAQN 199
>gi|193788502|dbj|BAG53396.1| unnamed protein product [Homo sapiens]
Length = 169
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 21 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 80
Query: 65 KSAN 68
K+ N
Sbjct: 81 KTQN 84
>gi|118403524|ref|NP_001072354.1| uncharacterized protein LOC779807 [Xenopus (Silurana) tropicalis]
gi|111305694|gb|AAI21450.1| hypothetical protein MGC146443 [Xenopus (Silurana) tropicalis]
Length = 204
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
V+TDG C RNG+ GA+ G GVY+G + NV+ K+ GR TN AEI+ A A+KQA+ N
Sbjct: 63 VYTDGCCSRNGQYGANGGIGVYWGPGDSRNVSAKLEGRQTNQRAEIEAARTAVKQARDDN 122
>gi|160285878|pdb|2QK9|A Chain A, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 18-Mer RnaDNA HYBRID
gi|160285887|pdb|2QKK|A Chain A, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285888|pdb|2QKK|B Chain B, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285891|pdb|2QKK|E Chain E, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285892|pdb|2QKK|F Chain F, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285895|pdb|2QKK|I Chain I, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285896|pdb|2QKK|J Chain J, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285899|pdb|2QKK|M Chain M, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285900|pdb|2QKK|N Chain N, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285903|pdb|2QKK|R Chain R, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285904|pdb|2QKK|S Chain S, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285907|pdb|2QKK|W Chain W, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
Length = 154
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QAK+
Sbjct: 8 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 67
Query: 67 ---------ANEKVKLKRSYNDTHAQKKVRNVSSVAMRIAQKVDYISHDVISVGI 112
N + N KK +S + K D+++ + ++ G+
Sbjct: 68 QNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGM 122
>gi|383852242|ref|XP_003701637.1| PREDICTED: ribonuclease H1-like [Megachile rotundata]
Length = 264
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEI 54
+D + +V V+TDGAC NG+ A AG GV+FG+++PLNV+ V GR TNN AEI
Sbjct: 114 IDSNGYVNVYTDGACSSNGRKNAKAGIGVWFGDDHPLNVSRPVVGRATNNMAEI 167
>gi|244790067|ref|NP_001156443.1| ribonuclease H1-like [Acyrthosiphon pisum]
gi|239792775|dbj|BAH72688.1| ACYPI28043 [Acyrthosiphon pisum]
Length = 157
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
VVV+ DGACPRNG GA AG GV+F + + LNV+ V G TNNNAEI A+ A+
Sbjct: 11 VVVYVDGACPRNGTRGARAGVGVWFDDFHDLNVSSTVPGIQTNNNAEIYAAVKAI 65
>gi|301611092|ref|XP_002935076.1| PREDICTED: ribonuclease H1-like [Xenopus (Silurana) tropicalis]
Length = 204
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
V+TDG C RNG+ GA+ G GVY+G + NV+ K+ GR TN AEI+ A A++QA+ N
Sbjct: 63 VYTDGCCYRNGQYGANGGIGVYWGPEDSRNVSAKLKGRQTNQRAEIEAACTAVEQARDDN 122
>gi|291220697|ref|XP_002730361.1| PREDICTED: ribonuclease H1-like [Saccoglossus kowalevskii]
Length = 309
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V V+TDG C NG+ GA AG GVY+G +P N++ +V GR TN AEI+ A AL+ A
Sbjct: 162 DRVAVYTDGCCTSNGRRGARAGLGVYWGPCHPRNISERVDGRQTNQRAEIKAASRALECA 221
Query: 65 KSANEK 70
N K
Sbjct: 222 IEMNIK 227
>gi|160285882|pdb|2QKB|A Chain A, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 20-Mer RnaDNA HYBRID
gi|160285883|pdb|2QKB|B Chain B, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 20-Mer RnaDNA HYBRID
Length = 154
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QAK+
Sbjct: 8 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 67
Query: 67 AN 68
N
Sbjct: 68 QN 69
>gi|341888714|gb|EGT44649.1| hypothetical protein CAEBREN_22993 [Caenorhabditis brenneri]
Length = 356
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
VFTDG+C GK A AG+GV++G+++P N +GKV G NN AE+ A HA++QA
Sbjct: 34 ATVFTDGSCRNQGKSNAKAGFGVFWGDDHPNNHSGKVDGLQDNNRAELFAACHAIRQA 91
>gi|50552764|ref|XP_503792.1| YALI0E10725p [Yarrowia lipolytica]
gi|49649661|emb|CAG79383.1| YALI0E10725p [Yarrowia lipolytica CLIB122]
Length = 474
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
VF DGAC NG A AGYG+YFGENNP NVA V G V T+ AE+Q + A +
Sbjct: 304 VFVDGACSNNGGPDAKAGYGLYFGENNPWNVAASVMGTVHTSQRAELQAIMKAYQ 358
>gi|158297078|ref|XP_317369.4| AGAP008088-PA [Anopheles gambiae str. PEST]
gi|157015022|gb|EAA12293.4| AGAP008088-PA [Anopheles gambiae str. PEST]
Length = 294
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 40/64 (62%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D D V V+TDG+C NG A AG GVYF E + LN A V+GR TNN EIQ A A+
Sbjct: 136 DEDGFVHVYTDGSCEGNGTARAVAGLGVYFAEGHALNTAKPVSGRATNNCGEIQAASLAI 195
Query: 62 KQAK 65
+ A+
Sbjct: 196 RLAR 199
>gi|260829299|ref|XP_002609599.1| hypothetical protein BRAFLDRAFT_125021 [Branchiostoma floridae]
gi|229294961|gb|EEN65609.1| hypothetical protein BRAFLDRAFT_125021 [Branchiostoma floridae]
Length = 203
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D VV+TDG C NG GASAG GVY+G + N++ K+ GR TNN AEI A +A++
Sbjct: 47 DGAAVVYTDGCCTDNGFHGASAGIGVYWGPGHERNMSAKLPGRQTNNRAEIHAARYAIES 106
Query: 64 AK 65
AK
Sbjct: 107 AK 108
>gi|198423486|ref|XP_002128178.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 282
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+TDGAC +NG+ G+ AGYGV++G+++ LN + ++ G TN AEI A+KQA
Sbjct: 133 VVYTDGACSKNGRKGSRAGYGVWWGDDHKLNFSARLPGIPTNQRAEIAAVNKAIKQAIDV 192
Query: 68 NEKVKLKRS 76
K L R+
Sbjct: 193 GHKQLLIRT 201
>gi|341886801|gb|EGT42736.1| hypothetical protein CAEBREN_11718 [Caenorhabditis brenneri]
Length = 358
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 1 MDPDNH-VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
M+ N VFTDG+C GK A AG+GV++G+++P N +GKV G NN AE+ A H
Sbjct: 27 MEEQNRGATVFTDGSCRNQGKSTAKAGFGVFWGDDHPNNHSGKVDGLQDNNRAELYAACH 86
Query: 60 ALKQA 64
A++Q+
Sbjct: 87 AIRQS 91
>gi|388580349|gb|EIM20664.1| ribonuclease H-like protein [Wallemia sebi CBS 633.66]
Length = 264
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALK 62
D+ VV+TDGAC NGK AG GVY+G+ +PLN+A KV G TNN E+ G I AL+
Sbjct: 90 DDSAVVYTDGACTDNGKKNPKAGCGVYWGKGSPLNLAEKVPGPNQTNNRGEMMGFIRALE 149
Query: 63 QA 64
+
Sbjct: 150 RC 151
>gi|156379280|ref|XP_001631386.1| predicted protein [Nematostella vectensis]
gi|156218425|gb|EDO39323.1| predicted protein [Nematostella vectensis]
Length = 272
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 39/58 (67%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
VV+TDG C RNG GA AG GVY+G N+ N++ ++ GR TN AEI A AL+ AK
Sbjct: 127 VVYTDGCCTRNGFSGAKAGVGVYWGPNHKRNISERLPGRQTNQRAEIVAATMALESAK 184
>gi|393212910|gb|EJC98408.1| hypothetical protein FOMMEDRAFT_23654 [Fomitiporia mediterranea
MF3/22]
Length = 291
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ + VV+ DGAC NG+VG+ AG GV++G N+P N+A + G TNN AE+ + L+Q
Sbjct: 101 EGYDVVYADGACKGNGQVGSVAGVGVWWGHNDPRNIAERCPGAQTNNRAELIAIVRVLEQ 160
Query: 64 AKSANEKVKLKRSYNDTHAQKKVR 87
+ + +K + T++ K +R
Sbjct: 161 TPPSGRPLMIKT--DSTYSIKCLR 182
>gi|321471007|gb|EFX81981.1| hypothetical protein DAPPUDRAFT_35962 [Daphnia pulex]
Length = 146
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 4/62 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV---TNNNAEIQGAIHALKQ 63
V+V+TDGAC RNG+ GA AG GV+F ++PLNV+ ++ R+ TNN AEI+ I ALK
Sbjct: 1 VIVYTDGACLRNGQPGAQAGIGVWFDYDHPLNVSQQLN-RIDPATNNVAEIKAVIEALKI 59
Query: 64 AK 65
K
Sbjct: 60 VK 61
>gi|405976256|gb|EKC40769.1| Ribonuclease H1 [Crassostrea gigas]
Length = 372
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V+TDG C NG+ AG GVY+G ++P NV+ ++ GR TNN AEI A A+KQAK
Sbjct: 222 VYTDGCCRNNGRDNPVAGVGVYWGPDHPSNVSERLPGRATNNRAEIHAARIAVKQAK 278
>gi|170085781|ref|XP_001874114.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651666|gb|EDR15906.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 561
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV++DGAC NGKVG+ AG GV++G N+P N+A + G TNN AE+ L+ +
Sbjct: 94 VVYSDGACKGNGKVGSVAGVGVWWGHNDPRNIAERCPGDQTNNRAELIAIARVLESTPRS 153
Query: 68 NEKVKLK 74
+ + +K
Sbjct: 154 KKPLLIK 160
>gi|171683197|ref|XP_001906541.1| hypothetical protein [Podospora anserina S mat+]
gi|170941558|emb|CAP67210.1| unnamed protein product [Podospora anserina S mat+]
Length = 334
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHA 60
DP+ +VV+TDGA P NGK A+AG GVYFG +P N++ ++ G + TN AE+ + A
Sbjct: 170 DPNELIVVYTDGAAPGNGKRHAAAGIGVYFGAGDPRNISKRLPGPLQTNQRAELMAILLA 229
Query: 61 LKQAKSANEKVKLK 74
L QA E V+++
Sbjct: 230 L-QAFDPAESVEIR 242
>gi|268573648|ref|XP_002641801.1| C. briggsae CBR-RNH-1.0 protein [Caenorhabditis briggsae]
Length = 266
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 2 DPD--NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
DP+ + VV+TDGAC +NGK A AG+GVY+GE++ N G V G TNN E+
Sbjct: 111 DPEFIDAPVVYTDGACSKNGKAKARAGWGVYWGEDSEDNAFGPVYGTATNNRGELIAVEK 170
Query: 60 ALKQA 64
AL++A
Sbjct: 171 ALEKA 175
>gi|443710129|gb|ELU04460.1| hypothetical protein CAPTEDRAFT_135802, partial [Capitella
teleta]
Length = 146
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 39/62 (62%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V V+TDG C NG+ AG GVY+G N N+A K+ GR TNN AEI A A++QAK
Sbjct: 3 VSVYTDGCCHDNGRGDPRAGIGVYWGPGNERNLAEKLYGRQTNNRAEIYAAHRAIEQAKE 62
Query: 67 AN 68
N
Sbjct: 63 MN 64
>gi|353238691|emb|CCA70629.1| related to ribonuclease H1 [Piriformospora indica DSM 11827]
Length = 448
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V+TDGAC +NGKV A AG GV++G ++ N++ + G TNN AE+ I AL+ A S
Sbjct: 200 IIVYTDGACKQNGKVDAVAGIGVWWGPHDERNLSERCPGDQTNNRAELIAIIRALETAPS 259
>gi|242008555|ref|XP_002425068.1| asparagine-rich protein, putative [Pediculus humanus corporis]
gi|212508733|gb|EEB12330.1| asparagine-rich protein, putative [Pediculus humanus corporis]
Length = 710
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/74 (48%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V V+TDG C NGK A AG G++FG+++PLNV+ + G TNN AEIQ A A
Sbjct: 546 VDKNEYVQVYTDGTCLNNGKKEARAGIGIWFGDSHPLNVSEPLVGSPTNNCAEIQAARVA 605
Query: 61 LKQAKSANEKVKLK 74
++ A A K KLK
Sbjct: 606 MELAIKAGIK-KLK 618
>gi|50543288|ref|XP_499810.1| YALI0A06523p [Yarrowia lipolytica]
gi|49645675|emb|CAG83736.1| YALI0A06523p [Yarrowia lipolytica CLIB122]
Length = 369
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALKQAKSA 67
+FTDGAC RNG+ A AG+G+Y GEN+ N++G+V G TN AE+ +HA S
Sbjct: 209 IFTDGACSRNGQKDAVAGFGLYLGENHKENLSGRVYGSPQTNQRAELTAILHAYCICASK 268
Query: 68 NEKVKLKRSYNDT 80
+L Y D+
Sbjct: 269 LSDGRLYEIYTDS 281
>gi|340376377|ref|XP_003386709.1| PREDICTED: ribonuclease H1-like [Amphimedon queenslandica]
Length = 244
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
VV++DG+C RNGK GA AG GVY+ EN+ NV+ +++G+ TN AE+ A A++
Sbjct: 102 VVYSDGSCYRNGKTGARAGIGVYWEENSIWNVSERLSGKQTNQRAELLSATRAIE 156
>gi|393239196|gb|EJD46729.1| ribonuclease H-like protein, partial [Auricularia delicata
TFB-10046 SS5]
Length = 168
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 15/113 (13%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHA 60
DPD + +TDG+C GK GA+AG GVY+G N LN++ ++ G + TNN AE+ +
Sbjct: 27 DPDP-IQAYTDGSCLNGGKPGAAAGLGVYWGPQNALNLSERLPGDIQTNNRAELCAILRC 85
Query: 61 LKQAKSANEKVKLKRSYNDTHAQKKVRNVSSVAMRIAQKVDY------ISHDV 107
L+QA + ++ Y+D+ + +R+++ A A+ +D+ I HD+
Sbjct: 86 LEQA----DPLRALHIYSDS--EYAIRSIAEWAPARAE-LDWTCTNGDILHDI 131
>gi|225710246|gb|ACO10969.1| Ribonuclease H1 [Caligus rogercresseyi]
Length = 257
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIH 59
++ + V VFTDGAC NG+ GA AG G YFG +P N++ V+G TNN+AEIQ
Sbjct: 108 LNKEGWVKVFTDGACSNNGRRGAVAGIGAYFGPGSPKNISEPVSGDHQTNNSAEIQAISQ 167
Query: 60 ALKQAK 65
A++ K
Sbjct: 168 AIQSVK 173
>gi|403418424|emb|CCM05124.1| predicted protein [Fibroporia radiculosa]
Length = 490
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D +V++DGAC NGK G+ AG GV++G ++P N+A + G TNN AE+ I L
Sbjct: 108 DETGWAIVYSDGACKGNGKAGSIAGVGVWWGRDDPRNLAERCPGMQTNNRAELIAIIRVL 167
Query: 62 KQAKSANEKVKLK 74
+ A + + +K
Sbjct: 168 ETAPRDKQPLLIK 180
>gi|341887045|gb|EGT42980.1| hypothetical protein CAEBREN_03086 [Caenorhabditis brenneri]
Length = 140
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 39/61 (63%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
H V+TDGAC G GA AGYGVYFGE++ N +G+V G +N E++ A A+ AK
Sbjct: 4 HADVYTDGACTNQGLSGARAGYGVYFGEDSQYNRSGRVVGPQDSNRGELRAAQVAIDSAK 63
Query: 66 S 66
S
Sbjct: 64 S 64
>gi|241781706|ref|XP_002400516.1| ribonuclease H1, putative [Ixodes scapularis]
gi|215508575|gb|EEC18029.1| ribonuclease H1, putative [Ixodes scapularis]
Length = 120
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 3 PDNHVVVFTDGACPRNGKVGAS--AGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
P V+TDGAC NG + AG GVY+G N+P+NV+ + GR TNN AEIQ A A
Sbjct: 14 PGCEYHVYTDGACSNNGGYNRTPQAGIGVYWGPNHPMNVSEPLPGRQTNNRAEIQAATRA 73
Query: 61 LKQAK 65
L Q +
Sbjct: 74 LYQVR 78
>gi|341885909|gb|EGT41844.1| hypothetical protein CAEBREN_19546 [Caenorhabditis brenneri]
Length = 140
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 38/61 (62%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
H V+TDGAC G GA AGYGVYFGE + N +G+V G +N E++ A A+ AK
Sbjct: 4 HADVYTDGACTNQGLSGAKAGYGVYFGEGSRYNQSGRVNGIQDSNRGELRAAQEAINLAK 63
Query: 66 S 66
S
Sbjct: 64 S 64
>gi|308465025|ref|XP_003094775.1| hypothetical protein CRE_19457 [Caenorhabditis remanei]
gi|308246945|gb|EFO90897.1| hypothetical protein CRE_19457 [Caenorhabditis remanei]
Length = 161
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M H V+ DGAC G A AGYGV++GEN+ N++G+V G NN E+ GA A
Sbjct: 1 MSNSKHAVINIDGACINQGLSNAKAGYGVHWGENHQNNLSGRVVGDQDNNRGELTGANQA 60
Query: 61 LKQ 63
LKQ
Sbjct: 61 LKQ 63
>gi|443927459|gb|ELU45942.1| RNase H domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 631
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
+ V+TDG+C NG+ A+A Y VYFG ++P N A + G+ TNN EI G I AL+
Sbjct: 355 IEVWTDGSCLGNGRENAAAAYAVYFGPDDPRNEAARAPGKQTNNVGEIYGVIRALE 410
>gi|426201378|gb|EKV51301.1| hypothetical protein AGABI2DRAFT_43209, partial [Agaricus
bisporus var. bisporus H97]
Length = 144
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV++DGAC NGK G+ AG GV++G N+P N+A + G TNN AE+ + L+ +
Sbjct: 1 VVYSDGACKGNGKAGSVAGVGVFYGPNDPRNLAERCPGDQTNNRAELIAIVRVLETVPVS 60
Query: 68 NEKVKLK 74
++K+ +K
Sbjct: 61 SQKLLIK 67
>gi|116200977|ref|XP_001226300.1| hypothetical protein CHGG_08373 [Chaetomium globosum CBS 148.51]
gi|88176891|gb|EAQ84359.1| hypothetical protein CHGG_08373 [Chaetomium globosum CBS 148.51]
Length = 312
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
V+V+TDG+ NG+VGA+AG GVYFG N+P NV+ ++ G TN AE+ + AL+
Sbjct: 166 VIVYTDGSSLGNGRVGATAGVGVYFGANDPRNVSERLEGETQTNQRAELTAILRALE 222
>gi|341882748|gb|EGT38683.1| hypothetical protein CAEBREN_07473 [Caenorhabditis brenneri]
Length = 140
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 38/61 (62%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
H V+TDGAC G GA AGYGVYFGE + N +G+V G +N E++ A A+ AK
Sbjct: 4 HADVYTDGACTNQGLSGAKAGYGVYFGEGSQYNRSGRVDGIQDSNRGELRAAQVAINSAK 63
Query: 66 S 66
S
Sbjct: 64 S 64
>gi|341882740|gb|EGT38675.1| hypothetical protein CAEBREN_05833 [Caenorhabditis brenneri]
Length = 90
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA-K 65
V V+TDGAC G A AGYGV++G+ N N G+VTG +N AE++ A A+K A +
Sbjct: 4 VTVYTDGACIDQGTKNARAGYGVFWGDGNKNNCFGRVTGPQDSNRAELRAAHQAIKTAVR 63
Query: 66 SANEKVKLK 74
+ EK+K++
Sbjct: 64 NGYEKIKIR 72
>gi|409083583|gb|EKM83940.1| hypothetical protein AGABI1DRAFT_14088, partial [Agaricus
bisporus var. burnettii JB137-S8]
Length = 144
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV++DGAC NGK G+ AG GV++G N+P N+A + G TNN AE+ + L+ +
Sbjct: 1 VVYSDGACKGNGKAGSIAGVGVFYGPNDPRNLAERCPGDQTNNRAELIAIVRVLETVPVS 60
Query: 68 NEKVKLK 74
++K+ +K
Sbjct: 61 SQKLLIK 67
>gi|393239084|gb|EJD46618.1| ribonuclease H-like protein, partial [Auricularia delicata
TFB-10046 SS5]
Length = 135
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKSA 67
++TDGAC RNG ASAG GVY+GE P N A +V G TNN E+ + A++QA
Sbjct: 1 IYTDGACERNGSQNASAGAGVYWGERCPRNCALRVPGPGQTNNRGELYAVLEAVRQA--- 57
Query: 68 NEKVKLKRSYNDT 80
E K R + D+
Sbjct: 58 -EPYKTLRIFTDS 69
>gi|341886823|gb|EGT42758.1| hypothetical protein CAEBREN_26064 [Caenorhabditis brenneri]
Length = 456
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V+TDG+C G A AG+GV++G+ +P N +GKV G NN AE+ A HA+ QA
Sbjct: 271 VYTDGSCHLQGTPNARAGFGVFWGDGHPNNFSGKVDGIQENNRAELAAAEHAIWQA 326
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V T G+C G A A +GV++G+ +P N KV G N AE+ A+ A+ QA
Sbjct: 46 VCTSGSCHLQGTPNARATFGVFWGDGHPKNFCEKVYGIQEKNRAELLAALIAIGQA 101
>gi|170037640|ref|XP_001846664.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167880948|gb|EDS44331.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 180
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
+ D V V+TDG+ NG A AG GVYFGE + LN V+GR TNN E Q A A+
Sbjct: 58 NEDGFVYVYTDGSWEGNGTAAACAGLGVYFGEGHTLNA---VSGRATNNCREFQAAALAI 114
Query: 62 KQAKSANEKVK 72
+ AK VK
Sbjct: 115 RLAKQQGITVK 125
>gi|324523182|gb|ADY48204.1| Ribonuclease H1 [Ascaris suum]
Length = 250
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQGAIHALKQAKS 66
VVFTDGAC NG GA AG GV++G+++P NV+ ++G TNN AE+ I AL+ A
Sbjct: 104 VVFTDGACSSNGHHGAKAGIGVFWGDDHPDNVSEPLISGPPTNNRAELSAVITALRTACE 163
Query: 67 AN 68
N
Sbjct: 164 RN 165
>gi|452977701|gb|EME77467.1| hypothetical protein MYCFIDRAFT_212709 [Pseudocercospora fijiensis
CIRAD86]
Length = 214
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHAL 61
++ +VV DGAC NGK A A YGVYFG ++P N AG V + T+ AEI+ HAL
Sbjct: 57 ESSLVVHIDGACRNNGKPNARAAYGVYFGPDSPFNCAGLVPSTIPQTSTRAEIEALAHAL 116
Query: 62 KQAKS-ANEKVKL 73
+ + N KL
Sbjct: 117 EAVQRICNTDFKL 129
>gi|149051045|gb|EDM03218.1| ribonuclease H1, isoform CRA_b [Rattus norvegicus]
Length = 200
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEI 54
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI
Sbjct: 139 VVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEI 186
>gi|341888703|gb|EGT44638.1| hypothetical protein CAEBREN_12948 [Caenorhabditis brenneri]
Length = 205
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 40/56 (71%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V+TDG+C G+ A+AG+GV++G+ +P N +G+V G NN AE+ A +A++QA
Sbjct: 40 VYTDGSCHNQGQPNATAGFGVFWGDLHPYNHSGRVDGLQDNNRAELTAAHYAIRQA 95
>gi|344280138|ref|XP_003411842.1| PREDICTED: hypothetical protein LOC100655166 [Loxodonta africana]
Length = 152
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQ 55
V+ DG+C NG+ GA AGYG Y+G +PLNV+ +V+GR TN AE++
Sbjct: 88 TVYIDGSCKNNGRDGARAGYGNYWGPGHPLNVSERVSGRQTNQTAELR 135
>gi|341885893|gb|EGT41828.1| hypothetical protein CAEBREN_00223 [Caenorhabditis brenneri]
Length = 140
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 38/61 (62%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
H V+TDGAC G GA AGYGVYFGE + N +G+V G +N E++ A A+ AK
Sbjct: 4 HADVYTDGACTNQGLPGAKAGYGVYFGEGSQYNRSGRVDGVQDSNRGELRAAQVAIDSAK 63
Query: 66 S 66
S
Sbjct: 64 S 64
>gi|341886817|gb|EGT42752.1| hypothetical protein CAEBREN_24873 [Caenorhabditis brenneri]
Length = 205
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 40/56 (71%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V+TDG+C G+ A+AG+GV++G+ +P N +G+V G NN AE+ A +A++QA
Sbjct: 40 VYTDGSCHNQGQPNATAGFGVFWGDLHPYNHSGRVDGLQDNNRAELTAAHYAIRQA 95
>gi|358378365|gb|EHK16047.1| hypothetical protein TRIVIDRAFT_227979 [Trichoderma virens Gv29-8]
Length = 260
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQAK 65
+V F DGACP NG+ A GVYFG +P N++ + T R TN AEI A+ A++Q +
Sbjct: 87 LVAFIDGACPANGQGALQASIGVYFGPESPNNISRVISTYRPTNQLAEITAAVEAMRQVR 146
Query: 66 S---ANEKVKLKRSYNDTHAQKKVRNVSSVAMRIAQKVDYI 103
S + +K S +H +R++ + +A Y+
Sbjct: 147 SIIMPERRALVKASLPGSHPD-ALRDIRHFTLVLATDSSYL 186
>gi|449547075|gb|EMD38043.1| hypothetical protein CERSUDRAFT_82283 [Ceriporiopsis subvermispora
B]
Length = 658
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
MD ++V+TDGAC NG+ G+ AG GV++G N+ N++ + G TNN AE+ + A
Sbjct: 75 MDAKGRLIVYTDGACGGNGQRGSKAGIGVWWGRNDTRNLSERCPGDQTNNRAELIAIVRA 134
Query: 61 LKQAKSANEKVKLKRSYN 78
L+ A +K Y+
Sbjct: 135 LETAPEKPLLIKTDSQYS 152
>gi|426195315|gb|EKV45245.1| hypothetical protein AGABI2DRAFT_144709 [Agaricus bisporus var.
bisporus H97]
Length = 208
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV--TGRVTNNNAEIQGAIHALKQ 63
H+ VF DGAC NG +GA AG GVYFG + N++ ++ G T+ AEI AI AL +
Sbjct: 45 HIAVFVDGACRGNGYLGARAGMGVYFGPRSRHNISQRLDDDGPQTSQRAEINAAILALDR 104
Query: 64 AKSANEKVKLK 74
KS ++ +L+
Sbjct: 105 VKSLLDQDRLE 115
>gi|308474914|ref|XP_003099677.1| hypothetical protein CRE_22985 [Caenorhabditis remanei]
gi|308266532|gb|EFP10485.1| hypothetical protein CRE_22985 [Caenorhabditis remanei]
Length = 192
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGEN-NPLNVAGKVTGRVTNNNAEIQGAIHA 60
D +H +V+TDG+C GK A AG+GV + EN +P N +GKV G + +AE+ A HA
Sbjct: 27 DDKSHCIVYTDGSCINQGKDSAKAGFGVCWDENYHPNNYSGKVHGLQDSGHAELCAAEHA 86
Query: 61 LKQA 64
+KQA
Sbjct: 87 IKQA 90
>gi|409076972|gb|EKM77340.1| hypothetical protein AGABI1DRAFT_108182 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 208
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV--TGRVTNNNAEIQGAIHALKQ 63
H+ VF DGAC NG +GA AG GVYFG + N++ ++ G T+ AEI AI AL +
Sbjct: 45 HIAVFVDGACRGNGYLGARAGMGVYFGPRSRHNISRRLDDDGPQTSQRAEINAAILALDR 104
Query: 64 AKSANEKVKLK 74
KS ++ +L+
Sbjct: 105 VKSLLDQDRLE 115
>gi|350855035|emb|CAZ37482.2| phosphoglucomutase, putative [Schistosoma mansoni]
Length = 576
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V+V+TDG+C AGYGVY+G N+P NV+ ++ G TNN AEI+ I A+KQA
Sbjct: 30 VMVYTDGSC-NGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICAIKQA 86
>gi|256090536|ref|XP_002581243.1| phosphoglucomutase [Schistosoma mansoni]
Length = 731
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V+V+TDG+C AGYGVY+G N+P NV+ ++ G TNN AEI+ I A+KQA
Sbjct: 30 VMVYTDGSC-NGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICAIKQA 86
>gi|322511036|gb|ADX06349.1| putative ribonuclease H1 [Organic Lake phycodnavirus 2]
Length = 198
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAI 58
++ D+++ V+ DG+C NGK A AG G+YFGEN+P NV+ + G +NN AE+ I
Sbjct: 52 LNQDSNIYVYCDGSCIHNGKSNAKAGIGIYFGENDPRNVSETINGH-SNNVAELIAMI 108
>gi|350855036|emb|CAZ37481.2| phosphoglucomutase, putative [Schistosoma mansoni]
Length = 671
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V+V+TDG+C AGYGVY+G N+P NV+ ++ G TNN AEI+ I A+KQA
Sbjct: 125 VMVYTDGSC-NGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICAIKQA 181
>gi|256090534|ref|XP_002581242.1| phosphoglucomutase [Schistosoma mansoni]
Length = 826
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V+V+TDG+C AGYGVY+G N+P NV+ ++ G TNN AEI+ I A+KQA
Sbjct: 125 VMVYTDGSC-NGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICAIKQA 181
>gi|308493295|ref|XP_003108837.1| CRE-RNH-1.0 protein [Caenorhabditis remanei]
gi|308247394|gb|EFO91346.1| CRE-RNH-1.0 protein [Caenorhabditis remanei]
Length = 194
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 2 DPD--NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
DP+ + VV+TDGAC NG A AG+GVY+G+++P N G V G TNN E+
Sbjct: 127 DPEFIDAPVVYTDGACSSNGTNRARAGWGVYWGDDSPDNEYGAVYGAPTNNRGELIAVEK 186
Query: 60 ALKQAKS 66
AL++ +S
Sbjct: 187 ALEKVRS 193
>gi|392562672|gb|EIW55852.1| ribonuclease H-like protein [Trametes versicolor FP-101664 SS1]
Length = 419
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+V+TDG+C NGK GA AG G+++G+++P N + G TNN AE+ I L+ A
Sbjct: 120 IVYTDGSCQGNGKPGAVAGIGIWWGKDDPRNTCERCPGDQTNNRAELIAIIRVLETA 176
>gi|256090538|ref|XP_002581244.1| phosphoglucomutase [Schistosoma mansoni]
Length = 817
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V+V+TDG+C AGYGVY+G N+P NV+ ++ G TNN AEI+ I A+KQA
Sbjct: 116 VMVYTDGSC-NGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICAIKQA 172
>gi|350855034|emb|CAZ37483.2| phosphoglucomutase, putative [Schistosoma mansoni]
Length = 662
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V+V+TDG+C AGYGVY+G N+P NV+ ++ G TNN AEI+ I A+KQA
Sbjct: 116 VMVYTDGSC-NGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICAIKQA 172
>gi|119495985|ref|XP_001264766.1| reverse transcriptase, RNaseH, putative [Neosartorya fischeri NRRL
181]
gi|119412928|gb|EAW22869.1| reverse transcriptase, RNaseH, putative [Neosartorya fischeri NRRL
181]
Length = 221
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHAL 61
+H+VV DGAC +NGK GA + YGV++G NN LN A V G TN AE++ + AL
Sbjct: 52 DHIVVAVDGACSKNGKDGARSSYGVFWGHNNVLNTAVPVEGEGHHTNQVAELRACMRAL 110
>gi|324526829|gb|ADY48717.1| Ribonuclease H [Ascaris suum]
Length = 181
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQGAIHALKQAK 65
VVFTDGAC NG GA AG GV++G+++P NV+ ++G TNN AE+ I AL+ +
Sbjct: 104 VVFTDGACSSNGHHGAKAGIGVFWGDDHPDNVSEPLISGPPTNNRAELSAVITALRTVR 162
>gi|358397043|gb|EHK46418.1| hypothetical protein TRIATDRAFT_256410 [Trichoderma atroviride IMI
206040]
Length = 331
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKSA 67
++TDG+ NG+ GA AG GVYFGEN+P N+A K+ G + TN AE+ + AL+ +A
Sbjct: 185 IYTDGSSLANGRKGARAGLGVYFGENDPRNLAEKLLGDKQTNQRAELMAMLRALESVPAA 244
Query: 68 NEKVKLKRSYNDTH 81
+ R Y+D+
Sbjct: 245 ----QTVRIYSDSQ 254
>gi|336376962|gb|EGO05297.1| hypothetical protein SERLA73DRAFT_44067 [Serpula lacrymans var.
lacrymans S7.3]
Length = 322
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+ DGAC NG+VG+ AG GV++G N+P N+ + G TNN AE+ + L+ ++
Sbjct: 118 VVYCDGACKGNGQVGSIAGVGVWWGVNDPRNIIERCPGDQTNNRAELIAIVRILETTPTS 177
Query: 68 NEKVKLK 74
+ +K
Sbjct: 178 KRTLVIK 184
>gi|170029000|ref|XP_001842382.1| ribonuclease H1 [Culex quinquefasciatus]
gi|167879432|gb|EDS42815.1| ribonuclease H1 [Culex quinquefasciatus]
Length = 135
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
+ D V V+TDG+ NG A AG GVYFGE + LN V+GR TNN + Q A A+
Sbjct: 14 NEDGFVYVYTDGSWEGNGTAAACAGLGVYFGEGHTLNA---VSGRATNNCRKFQAAALAI 70
Query: 62 KQAKSANEKVK 72
+ AK VK
Sbjct: 71 RLAKQQGITVK 81
>gi|254565827|ref|XP_002490024.1| Ribonuclease H1 [Komagataella pastoris GS115]
gi|238029820|emb|CAY67743.1| Ribonuclease H1 [Komagataella pastoris GS115]
gi|328350430|emb|CCA36830.1| ribonuclease HI [Komagataella pastoris CBS 7435]
Length = 274
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
NH +++TDGA NGK GA GYGV+F EN+ N++ +TG TN AE+ AL
Sbjct: 115 NHEIIYTDGATRGNGKFGAKGGYGVFFKENDLRNISKPLTGVQTNQRAELSAVRDAL 171
>gi|171677308|ref|XP_001903605.1| hypothetical protein [Podospora anserina S mat+]
gi|170936722|emb|CAP61380.1| unnamed protein product [Podospora anserina S mat+]
Length = 311
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
+V+TDGA P NGK GA G GV+FG ++P NV+ ++ G + TN AE+ + AL+
Sbjct: 154 TMVYTDGAAPGNGKAGACGGVGVWFGADDPRNVSERLAGPLQTNQRAELTAILRALQ 210
>gi|341886825|gb|EGT42760.1| hypothetical protein CAEBREN_10874 [Caenorhabditis brenneri]
Length = 369
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V+TDG+C G A AG+GVY+G+ +P NV+GKV G NN AE+ A+ A+ QA
Sbjct: 184 VYTDGSCHLPGTPNARAGFGVYWGDGHPNNVSGKVDGIQENNRAELLAAVVAICQA 239
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGA 57
V TDG+C NGK+ A A + V++G + N + KV G +N AE+ A
Sbjct: 44 VSTDGSCSFNGKLNARAAFAVWWGNDPQNNHSEKVEGTQESNRAELVAA 92
>gi|321472337|gb|EFX83307.1| hypothetical protein DAPPUDRAFT_223388 [Daphnia pulex]
Length = 163
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK------VTGRVTNNNAEI 54
+D + +V+V+ DGACP NG GA G GV+FG N+PLNV+ + TN AEI
Sbjct: 11 VDRNGYVIVYIDGACPGNGIQGARGGIGVWFGNNHPLNVSEPLRRHEFIHTNPTNQVAEI 70
Query: 55 QGAIHALKQAKS 66
+ AI A + ++
Sbjct: 71 KAAIRACELLRN 82
>gi|296224561|ref|XP_002758102.1| PREDICTED: ribonuclease H1 [Callithrix jacchus]
Length = 287
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPL-NVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ VVV+TDG C NG+ AG GVY+G + NV ++ GR TN AEI A A++Q
Sbjct: 138 DSVVVYTDGCCCSNGRRRPRAGIGVYWGPGHLCKNVGIRLPGRQTNQRAEIHAACKAIEQ 197
Query: 64 AKSAN 68
AK+ N
Sbjct: 198 AKAQN 202
>gi|393228682|gb|EJD36322.1| ribonuclease H-like protein, partial [Auricularia delicata
TFB-10046 SS5]
Length = 200
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALKQA 64
V V+TDG+C NG+ A++G GV++G++NPLN A + G TNN AE+ + AL+ A
Sbjct: 64 VRVYTDGSCLGNGRSWAASGSGVFWGDSNPLNTAARTPGPGQTNNRAELYAVLIALRDA 122
>gi|340939599|gb|EGS20221.1| ribonuclease H-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 335
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
+VV+TDG+ NG+ GASAG GVYFG ++P N++ ++ G V TN AE+ + AL+
Sbjct: 188 LVVYTDGSSLGNGRNGASAGVGVYFGPSDPRNISERLEGEVQTNQRAELTAILRALQ 244
>gi|429851426|gb|ELA26616.1| RNase h domain protein [Colletotrichum gloeosporioides Nara gc5]
Length = 384
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQ 63
++TDG+C NG A+ G GV+FGEN+P NV+ ++ G + TN AE+ G + AL++
Sbjct: 167 IYTDGSCLGNGTDNATGGVGVFFGENDPRNVSERLEGKKQTNQRAELTGVLRALEK 222
>gi|170595213|ref|XP_001902289.1| RNase H family protein [Brugia malayi]
gi|158590103|gb|EDP28857.1| RNase H family protein [Brugia malayi]
Length = 212
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQA 64
+V+TDGAC NG VGA+AG GVY+GE + N++ + G TNN AE++ I A++ A
Sbjct: 63 IVYTDGACSFNGHVGATAGIGVYWGEQHVDNISEPLLRGPPTNNRAELEAVIRAVQMA 120
>gi|146322556|ref|XP_752368.2| ribonuclease H1 [Aspergillus fumigatus Af293]
gi|129557726|gb|EAL90330.2| ribonuclease H1, putative [Aspergillus fumigatus Af293]
gi|159131123|gb|EDP56236.1| reverse transcriptase, RNaseH, putative [Aspergillus fumigatus
A1163]
Length = 221
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHAL 61
++H+VV DGAC +NG+ GA + YGV++G NN LN A V G TN AE++ + AL
Sbjct: 51 NDHIVVAVDGACLKNGQDGARSSYGVFWGHNNVLNTAVPVEGEGNHTNQVAELRACMRAL 110
>gi|392558791|gb|EIW51977.1| hypothetical protein TRAVEDRAFT_156671 [Trametes versicolor
FP-101664 SS1]
Length = 342
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D VV++DGAC NGK G+ AG GV++G+N+ N+A + G TNN AE+ + L
Sbjct: 129 DESGWDVVYSDGACKGNGKTGSIAGVGVWWGQNDARNIAERCPGGQTNNRAELIAIVRVL 188
Query: 62 K 62
+
Sbjct: 189 E 189
>gi|321446744|gb|EFX60940.1| hypothetical protein DAPPUDRAFT_340962 [Daphnia pulex]
Length = 159
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR------VTNNNAEI 54
+D + +V+V+ DGACP NG GA G GV+FG N+PLNV+ + TN AEI
Sbjct: 7 VDRNGYVIVYIDGACPGNGIQGARGGIGVWFGNNHPLNVSEPLRRHEFIHINPTNQVAEI 66
Query: 55 QGAIHALKQAKS 66
+ AI A + ++
Sbjct: 67 KAAIRACELLRN 78
>gi|349804131|gb|AEQ17538.1| putative ribonuclease h1 [Hymenochirus curtipes]
Length = 77
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 33/44 (75%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVT 48
+ VV+TDG C RNG++ A AG GVY+G ++PLNVA ++ GR T
Sbjct: 34 DSTVVYTDGCCSRNGRLKARAGVGVYWGPSHPLNVAERLEGRQT 77
>gi|299756462|ref|XP_001829350.2| hypothetical protein CC1G_00529 [Coprinopsis cinerea okayama7#130]
gi|298411687|gb|EAU92310.2| hypothetical protein CC1G_00529 [Coprinopsis cinerea okayama7#130]
Length = 539
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D +VV+TDGA NG+ G+ AG GV++G ++P N+A + G TNN AE+ + L
Sbjct: 92 DESEWLVVYTDGASKGNGQPGSVAGIGVWWGHDDPRNIAERCPGDQTNNRAELLAILRVL 151
Query: 62 KQAKSANEKVKLK 74
+ A + + +K
Sbjct: 152 ETAPISKTPLLIK 164
>gi|115532542|ref|NP_001040786.1| Protein RNH-1.0, isoform c [Caenorhabditis elegans]
gi|351062499|emb|CCD70468.1| Protein RNH-1.0, isoform c [Caenorhabditis elegans]
Length = 251
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 1 MDPD--NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAI 58
+DP+ N VV+TDGAC NG A AG+GVY+G+++ N G V G TNN E+
Sbjct: 95 IDPEFANAPVVYTDGACSSNGTKNAKAGWGVYWGDDSEDNEFGPVYGAPTNNRGELIAVQ 154
Query: 59 HALKQA 64
A+++A
Sbjct: 155 KAIEKA 160
>gi|367041475|ref|XP_003651118.1| hypothetical protein THITE_2111128 [Thielavia terrestris NRRL 8126]
gi|346998379|gb|AEO64782.1| hypothetical protein THITE_2111128 [Thielavia terrestris NRRL 8126]
Length = 327
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
VVV+TDG+ NG+ GA+AG GVYFGE++P N++ ++ G TN AE+ + AL+
Sbjct: 181 VVVYTDGSSLGNGRNGATAGVGVYFGESDPRNISERLQGEPQTNQRAELTAILRALE 237
>gi|452821851|gb|EME28876.1| ribonuclease HI [Galdieria sulphuraria]
Length = 280
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
++TDGAC NG A AGYGVYFG+ + N++ + G+V TN AE+ I AL+
Sbjct: 120 LYTDGACISNGSCSAKAGYGVYFGDGDSRNISRPLLGQVQTNQRAELSAMIAALE 174
>gi|390345521|ref|XP_781875.3| PREDICTED: Fanconi anemia group J protein-like [Strongylocentrotus
purpuratus]
Length = 1704
Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 38/106 (35%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKK--------------- 136
+I++ +D+ ++ VI+VGIP+P+++D V+ KR YND H+ +
Sbjct: 831 KISEGMDFADNNARAVITVGIPYPNVRDAQVEAKRHYNDQHSASRGLLTGSEWYEVQAYR 890
Query: 137 --------------------GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIP+P+++D +V+ KR YND HA +
Sbjct: 891 ALNQALGRCIRHKVLMLDEVGIPYPNVRDAQVEAKRHYNDQHAAAR 936
Score = 44.3 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 68 NEKVKLKRSYNDTHAQKKVRNVSS-----VAMRIAQKV--DYISHDVI---SVGIPFPSI 117
+ +V+ KR YND H+ + S A R + I H V+ VGIP+P++
Sbjct: 858 DAQVEAKRHYNDQHSASRGLLTGSEWYEVQAYRALNQALGRCIRHKVLMLDEVGIPYPNV 917
Query: 118 QDENVKLKRSYNDTHAQKKGI 138
+D V+ KR YND HA +G+
Sbjct: 918 RDAQVEAKRHYNDQHAAARGL 938
>gi|452820270|gb|EME27315.1| ribonuclease HI [Galdieria sulphuraria]
Length = 326
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
++TDGAC NG A AGYGVYFG+ + N++ + G+V TN AE+ I AL+
Sbjct: 166 LYTDGACISNGSCSAKAGYGVYFGDGDSRNISRPLLGQVQTNQRAELSAMIAALE 220
>gi|342888163|gb|EGU87530.1| hypothetical protein FOXB_01953 [Fusarium oxysporum Fo5176]
Length = 208
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQAK 65
+VVF DGACP NG A GVYFG +P N++ + T R TN AEI A+ ++Q
Sbjct: 87 LVVFIDGACPENGPAALQASVGVYFGPESPKNISRLIDTSRPTNQLAEITAAVEDMRQWT 146
Query: 66 SANEKVKLKRSY 77
N L R Y
Sbjct: 147 FDN----LNRVY 154
>gi|367030821|ref|XP_003664694.1| hypothetical protein MYCTH_2307792 [Myceliophthora thermophila ATCC
42464]
gi|347011964|gb|AEO59449.1| hypothetical protein MYCTH_2307792 [Myceliophthora thermophila ATCC
42464]
Length = 327
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
VV++TDG+ NG++GA+AG GVYFG +P N++ ++ G TN AE+ + AL+
Sbjct: 181 VVIYTDGSSLGNGRLGATAGVGVYFGPGDPRNISERLKGETQTNQRAELTAILRALE 237
>gi|392597844|gb|EIW87166.1| ribonuclease H-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 392
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+ DGAC NG+ G+ AG GV++G ++P N++ + G TNN AE+ + L+ ++
Sbjct: 117 VVYCDGACRGNGQPGSVAGLGVWWGHDDPRNISERCPGDQTNNRAELCAIVRVLETTSAS 176
Query: 68 NEKVKLK 74
+ +K
Sbjct: 177 KGTLIIK 183
>gi|19112918|ref|NP_596126.1| ribonuclease H Rnh1 (predicted) [Schizosaccharomyces pombe 972h-]
gi|41017812|sp|Q9UST8.1|RNH1_SCHPO RecName: Full=Ribonuclease H; Short=RNase H
gi|6048295|emb|CAB58158.1| ribonuclease H Rnh1 (predicted) [Schizosaccharomyces pombe]
Length = 264
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
VV+ DG+ RNGK GA AG GV+FG ++P N++ + G TNN AE+Q I AL+
Sbjct: 125 VVYADGSSLRNGKKGAVAGCGVFFGNDDPRNISVPLAGEEQTNNRAELQAIILALE 180
>gi|341898149|gb|EGT54084.1| hypothetical protein CAEBREN_13986 [Caenorhabditis brenneri]
Length = 90
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V V+TDGAC G + AGYGVY+G+ + N G+VTG +N AE++ A A+K A
Sbjct: 4 VTVYTDGACIDQGTKNSRAGYGVYWGDGHKNNRFGRVTGPQDSNRAELRAAHQAIKTAVR 63
Query: 67 ANEKVKLKRSYNDTHAQKKVRN 88
N K+K + ++ + VRN
Sbjct: 64 -NGYAKIKICTDSSYVVETVRN 84
>gi|341885885|gb|EGT41820.1| hypothetical protein CAEBREN_05312 [Caenorhabditis brenneri]
Length = 92
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
V V+TDGAC G A AGYGVY+G+ N N G+VTG +N E++ A A+K
Sbjct: 4 VTVYTDGACIDQGTKNARAGYGVYWGDGNKNNCEGRVTGPQDSNRTELRAAHQAIK 59
>gi|345564269|gb|EGX47243.1| hypothetical protein AOL_s00091g64 [Arthrobotrys oligospora ATCC
24927]
Length = 229
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHAL 61
N ++V DGAC NG YGVYFG N+P N +G +T V T+N AEI+ I AL
Sbjct: 69 NTMIVNIDGACRNNGGQNPHGAYGVYFGPNSPYNASGLITSDVAQTSNRAEIEALIKAL 127
>gi|340517696|gb|EGR47939.1| hypothetical protein TRIREDRAFT_4265 [Trichoderma reesei QM6a]
Length = 309
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
+N + ++TDG+ NGK GA AG GV+FGEN+P N+A ++ G TN AE+ AL+
Sbjct: 158 ENVLNIWTDGSSLANGKAGARAGLGVWFGENDPRNLAERLPGEPQTNQRAELLAMQRALE 217
Query: 63 QA 64
A
Sbjct: 218 IA 219
>gi|401415090|ref|XP_003872041.1| putative ribonuclease H1 [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322488263|emb|CBZ23508.1| putative ribonuclease H1 [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 250
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKV--TGRVTNNNAEIQGAIH 59
P VV+ DGAC NG A AGYG Y+G ++P N + V T TNN E++G IH
Sbjct: 27 PRGFEVVYVDGACSHNGTAQARAGYGGYYGSMSDPRNFSCPVPLTESQTNNRGEVRGVIH 86
Query: 60 ALKQA 64
A+ QA
Sbjct: 87 AIVQA 91
>gi|308491388|ref|XP_003107885.1| hypothetical protein CRE_12596 [Caenorhabditis remanei]
gi|308249832|gb|EFO93784.1| hypothetical protein CRE_12596 [Caenorhabditis remanei]
Length = 145
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+TDG+C G A AGYGVY+G+ + N +G V+G +N AE++ A A+K A S
Sbjct: 10 VYTDGSCRNQGTANAQAGYGVYWGQGHANNRSGTVSGHQDSNRAELRAAQQAVKTASS 67
>gi|170042793|ref|XP_001849097.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167866254|gb|EDS29637.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 186
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 36/175 (20%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D D V V+TDG+ NG A AG VYFGE + LN V+GR TNN E A A+
Sbjct: 16 DEDGFVYVYTDGSWEGNGTAAACAGLVVYFGEGHALNA---VSGRATNNCGEFLAAALAI 72
Query: 62 KQAKSANEKVKLKRSYNDTHAQKKVRNVS-------------SVAMRIAQKVDYISHDVI 108
+ K +KR +T ++ V +++ S + +VD+ D +
Sbjct: 73 RLTKQQG----IKRLTVNTDSKFLVNSITKWLPGWKRNAWKLSTGKPVKNQVDFEELDPL 128
Query: 109 SVGIPFPSIQDENVKLKRSYNDTH--------AQKKGIP--FPSI-QDEKVKLKR 152
+ ++++K+K ++ D H A G P F +I Q E LKR
Sbjct: 129 D-----QELAEKSIKIKWNHADAHCVILGNERADAGGCPGRFGNISQTESKSLKR 178
>gi|330934491|ref|XP_003304570.1| hypothetical protein PTT_17208 [Pyrenophora teres f. teres 0-1]
gi|311318749|gb|EFQ87344.1| hypothetical protein PTT_17208 [Pyrenophora teres f. teres 0-1]
Length = 214
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHAL 61
+N +VVF DGAC NG A A YGVYFG +P N G V + T+ AEI+ AL
Sbjct: 56 ENSMVVFIDGACRNNGSPTARASYGVYFGPESPYNRYGLVPDSLPQTSTRAEIEALSQAL 115
Query: 62 KQAKSANEK 70
+ ++ ++
Sbjct: 116 EVIRAITDR 124
>gi|50545063|ref|XP_500083.1| YALI0A15059p [Yarrowia lipolytica]
gi|49645948|emb|CAG84014.1| YALI0A15059p [Yarrowia lipolytica CLIB122]
Length = 225
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
V+TDGAC RNGK A AG GVYFG NNP N + + G + TN AE+ AL+
Sbjct: 74 VYTDGACIRNGKRDARAGCGVYFGANNPFNESKILGGTLQTNQRAELVAIKRALQ 128
>gi|395507270|ref|XP_003757950.1| PREDICTED: ribonuclease H1-like [Sarcophilus harrisii]
Length = 177
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
DP+ V+ GAC NG+ GA G G +G N+ N + +GR TN +A ++ A +
Sbjct: 31 DPE---TVYIKGACKNNGREGAQGGIGTCWGPNHKFNTSSTFSGRQTNQSASLEAATKGI 87
Query: 62 KQAKSANE 69
+QAK+ N+
Sbjct: 88 EQAKAQNK 95
>gi|209489240|gb|ACI49022.1| hypothetical protein Cbre_JD04.007 [Caenorhabditis brenneri]
Length = 180
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 DPD--NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
DP+ + VVFTDGAC NG A AG+GV++G++N N G V G TNN E
Sbjct: 106 DPEFADAPVVFTDGACSSNGGKKAKAGWGVFWGDDNEDNEYGPVYGAATNNRGEYIAVEK 165
Query: 60 ALKQ 63
AL++
Sbjct: 166 ALEK 169
>gi|347831496|emb|CCD47193.1| similar to ribonuclease H [Botryotinia fuckeliana]
Length = 325
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALK 62
+ + V+TDG+ NGKVGA AGYGV+FG+ + N++ + G TN AE+ A+ AL+
Sbjct: 173 DMIKVWTDGSSRGNGKVGAVAGYGVFFGDGDERNISAPLEGSPQTNQRAELTAALRALE 231
>gi|154317974|ref|XP_001558306.1| hypothetical protein BC1G_02970 [Botryotinia fuckeliana B05.10]
Length = 325
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALK 62
+ + V+TDG+ NGKVGA AGYGV+FG+ + N++ + G TN AE+ A+ AL+
Sbjct: 173 DMIKVWTDGSSRGNGKVGAVAGYGVFFGDGDERNISAPLEGSPQTNQRAELTAALRALE 231
>gi|308490085|ref|XP_003107235.1| hypothetical protein CRE_14515 [Caenorhabditis remanei]
gi|308252341|gb|EFO96293.1| hypothetical protein CRE_14515 [Caenorhabditis remanei]
Length = 155
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
H + +TDG+C G+ A AG+GV++ + N GKVTG NN AE+ A A++ A
Sbjct: 31 HAIAYTDGSCFNPGRRNAKAGFGVFWYDGCEYNCCGKVTGIQDNNRAELCAACRAIRMAY 90
Query: 66 SANE 69
+ E
Sbjct: 91 NLKE 94
>gi|341887039|gb|EGT42974.1| hypothetical protein CAEBREN_03185 [Caenorhabditis brenneri]
Length = 63
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
V V+TDGAC G A AGYGV++G+ N N G+VTG +N AE++ A A+K
Sbjct: 4 VTVYTDGACIDQGTKNARAGYGVFWGDGNKNNCKGRVTGPQDSNRAELRAAHQAIK 59
>gi|390597543|gb|EIN06942.1| ribonuclease H-like protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 577
Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VVF DGAC NG+ G+ AG GV++G +P N+A + G TNN AE+ L+ +
Sbjct: 92 VVFCDGACKGNGQKGSYAGIGVWWGHQDPRNIAERCPGNQTNNRAELIAIARVLENTPIS 151
Query: 68 NEKVKLK 74
+ + +K
Sbjct: 152 KKPLLIK 158
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
VV+ DGAC NG G+ AG GV++G +P N+A + G TN AE+ I L++
Sbjct: 353 VVYCDGACTGNGNPGSVAGIGVWWGPEDPRNLAERCPGAQTNIRAELIAIIRILEE 408
>gi|2911504|gb|AAC04366.1| ribonuclease H1 [Schizosaccharomyces pombe]
Length = 264
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
VV+ +G+ RNGK GA AG GV+FG ++P N++ + G TNN AE+Q I AL+
Sbjct: 125 VVYAEGSSLRNGKKGAVAGCGVFFGNDDPRNISVPLAGEEQTNNRAELQAIILALE 180
>gi|225711046|gb|ACO11369.1| Ribonuclease H1 [Caligus rogercresseyi]
Length = 394
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIH 59
M+ D V VFTDGAC NG+ GAS G G++F +N+ N + + R TNN AE+
Sbjct: 239 MNKDGWVKVFTDGACIHNGRRGASGGIGIFFWKNSHKNTSEPLIDLRQTNNVAELTAISR 298
Query: 60 ALKQAKS 66
A++ KS
Sbjct: 299 AIQIVKS 305
>gi|393239997|gb|EJD47525.1| ribonuclease H-like protein, partial [Auricularia delicata
TFB-10046 SS5]
Length = 151
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAK 65
V +TDG+C NG A++G G+Y+GE N LN A +V G TNN+ E+ AL+ A
Sbjct: 15 VEAYTDGSCLNNGGPNAASGSGIYWGERNALNCAARVPGPGQTNNHGELYAIFLALRDA- 73
Query: 66 SANEKVKLKRSYNDTHAQKKVRNVSSV-AMRI-AQKVDYISHDVISVGIPFPSIQDENVK 123
L +S+ T + N ++ A R A + + DVI + + IQ +
Sbjct: 74 ------ALDKSFRITSDSEYAINAATWNAPRTAANSWQFPNGDVIMLIV--SRIQLRQAQ 125
Query: 124 LKRSYNDTHAQ 134
++ SY H+Q
Sbjct: 126 VRFSYTKGHSQ 136
>gi|348679769|gb|EGZ19585.1| hypothetical protein PHYSODRAFT_496359 [Phytophthora sojae]
Length = 330
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 2 DPD----NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQG 56
DPD + +V F DG+ NG+ G AGY F N NVA + V RVTNN AE
Sbjct: 164 DPDPKDPSSLVAFCDGSALENGRRGCRAGYACIFPHNESWNVAKQLVEDRVTNNRAEYMA 223
Query: 57 AIHALKQA 64
A+ A+K+A
Sbjct: 224 ALEAMKRA 231
>gi|389750407|gb|EIM91578.1| ribonuclease H-like protein [Stereum hirsutum FP-91666 SS1]
Length = 412
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 4 DNHVVVFTDGACPRN-GKV-----GASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGA 57
D V+TDGAC N GK AG GV++G N+P NV + G TNN AE+
Sbjct: 119 DEWEEVYTDGACRNNQGKALKKGPPPKAGLGVWWGPNDPRNVCERCPGEQTNNRAELIAI 178
Query: 58 IHALKQAKSANEKVKLK 74
I L+ + +++++K
Sbjct: 179 IRVLEMTPQSQKRIRIK 195
>gi|393231646|gb|EJD39236.1| ribonuclease H-like protein, partial [Auricularia delicata
TFB-10046 SS5]
Length = 154
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALKQAK 65
V V+TDG+C NG+ A+ G GVY+GE N LN A + G TNN E+ AL+ A
Sbjct: 15 VEVYTDGSCLNNGRPNAACGSGVYWGERNTLNCAARAPGPGQTNNRGELYAIFIALRDA- 73
Query: 66 SANEKVKLKRSYNDTHAQKKVRNVSSVAMRIAQKVDYISHDVISVGIPFPSIQDENVKLK 125
A +K S ++ N A A + D+I + + IQ +++
Sbjct: 74 -ALDKTLRVTSDSEYAINSATWNAPRAA---ANGWQVPNGDIIMLIV--SRIQQRQAQVR 127
Query: 126 RSYNDTHAQ 134
SY +HAQ
Sbjct: 128 FSYTKSHAQ 136
>gi|402225199|gb|EJU05260.1| hypothetical protein DACRYDRAFT_19826 [Dacryopinax sp. DJM-731 SS1]
Length = 305
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
VV+TDGAC NG+ GA+ G GVY+G N++ ++ G TNN AE+ + AL+
Sbjct: 115 VVYTDGACSGNGRAGATGGIGVYWGPGM-KNISERLPGAQTNNRAELIALVRALE 168
>gi|154331049|ref|XP_001561964.1| putative ribonuclease H1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059286|emb|CAM36985.1| putative ribonuclease H1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 228
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKV--TGRVTNNNAEIQGAIHALKQ 63
VVV+ DGAC NG A AGYG Y+G ++P N + V T TNN E++ IHA+ Q
Sbjct: 9 VVVYVDGACSHNGTSQARAGYGGYYGSLSDPRNFSCAVPLTESQTNNRGELRAVIHAIVQ 68
Query: 64 A 64
A
Sbjct: 69 A 69
>gi|453084651|gb|EMF12695.1| ribonuclease H-like protein [Mycosphaerella populorum SO2202]
Length = 212
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHALKQA 64
+V+ DGAC NG A A YG+YFG N+P N G V + T+ AEI+ HAL
Sbjct: 58 MVIHIDGACRGNGTRNARAAYGIYFGPNSPYNTWGLVPAHMPQTSTRAEIEALAHALPVL 117
Query: 65 KS 66
+S
Sbjct: 118 QS 119
>gi|321472557|gb|EFX83527.1| hypothetical protein DAPPUDRAFT_301828 [Daphnia pulex]
Length = 156
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR---VTNNNAEIQGA 57
D ++VV + DGACP NG A G GV+FG+++PLNV+ + TN AEI+
Sbjct: 8 FDSHDNVVTYIDGACPFNGYPHAKGGIGVWFGDDHPLNVSEPLDREGFPPTNQVAEIKAC 67
Query: 58 IHALKQAK 65
I A + K
Sbjct: 68 IRACQILK 75
>gi|156063922|ref|XP_001597883.1| hypothetical protein SS1G_02079 [Sclerotinia sclerotiorum 1980]
gi|154697413|gb|EDN97151.1| hypothetical protein SS1G_02079 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 397
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 7 VVVFTDGACPRNG-KVGASAGYGVYFGENNPLNVAGKVT----GRVTNNNAEIQGAIHAL 61
+V+ DGACP NG + + +GV+FG ++PLN + R TNN AE+ +HAL
Sbjct: 57 LVIAADGACPHNGTSLATKSSFGVFFGPDSPLNTCDLIARPPGERHTNNYAELTSVLHAL 116
Query: 62 K 62
+
Sbjct: 117 E 117
>gi|310796781|gb|EFQ32242.1| hypothetical protein GLRG_07386 [Glomerella graminicola M1.001]
Length = 355
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
++ V+TDG+ NG G+ AG GVYFG N+P NV+ ++ G++ TN AE+ + AL+
Sbjct: 194 EDTAKVYTDGSSLGNGTPGSVAGVGVYFGPNDPRNVSERLEGKLQTNQRAELTAILRALQ 253
>gi|396464878|ref|XP_003837047.1| hypothetical protein LEMA_P032810.1 [Leptosphaeria maculans JN3]
gi|312213605|emb|CBX93607.1| hypothetical protein LEMA_P032810.1 [Leptosphaeria maculans JN3]
Length = 460
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
++V+TDG+ NG+ GA AG GVYFG +P NV+ + G R TN AE+ AL
Sbjct: 234 IIVYTDGSSLGNGRTGAVAGVGVYFGPRDPRNVSEPLRGDRQTNQRAELTAVARAL 289
>gi|389749285|gb|EIM90462.1| ribonuclease H-like protein, partial [Stereum hirsutum FP-91666
SS1]
Length = 136
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V+TDG+C NG+ GA AG G+++ N+P NV+ +V G TN E+ AL++A
Sbjct: 3 VWTDGSCHGNGRDGARAGAGIWWAANSPRNVSARVPGAQTNMRGELLAVYIALREA 58
>gi|429851916|gb|ELA27074.1| ribonuclease [Colletotrichum gloeosporioides Nara gc5]
Length = 299
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 4 DNHVVVFTDGACPRNGKVGAS-AGYGVYFGENNPLNVAGKVT------GRVTNNNAEIQG 56
++ +V+ DGACP NG A+ +GYGV+F NP N+A ++ G+ TNN AEI
Sbjct: 87 EDPLVIAIDGACPGNGTNRATKSGYGVFFAPGNPKNMAARIPDHLLEGGKHTNNIAEIMS 146
Query: 57 AIHALKQA 64
AI AL A
Sbjct: 147 AISALHGA 154
>gi|358378287|gb|EHK15969.1| hypothetical protein TRIVIDRAFT_56712 [Trichoderma virens Gv29-8]
Length = 302
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALKQAKSA 67
++TDG+ NG+ G+ AG GVYFGEN+P N++ ++ G TN AE+ AL+ A S
Sbjct: 156 IWTDGSSLANGRAGSRAGLGVYFGENDPRNLSERLIGEPQTNQRAELMAMQRALEIA-SL 214
Query: 68 NEKVKLKRSYNDTHAQKKVRNVSSVAMRIAQK 99
+ V++ + +Q ++ V+ A+ QK
Sbjct: 215 EQHVRIH-----SDSQYSIKCVTEWAVGWKQK 241
>gi|170052423|ref|XP_001862215.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167873370|gb|EDS36753.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 117
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQ 55
+ D V V+TDG+ NG A AG GVYFGE + LN V+GR TNN E Q
Sbjct: 58 NEDGFVYVYTDGSWEGNGTAAACAGLGVYFGEGHTLNA---VSGRATNNCREFQ 108
>gi|343428929|emb|CBQ72474.1| related to Ribonuclease H [Sporisorium reilianum SRZ2]
Length = 170
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGEN--NPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
++ V+ DG+C NGK A AGY YF + NVA ++ G TNN AE+ I A++Q
Sbjct: 18 YIFVYCDGSCLGNGKPWARAGYAAYFPDPRLRDRNVAARLQGLQTNNRAELMALIRAVQQ 77
Query: 64 AKSANEKV 71
A +V
Sbjct: 78 ASKDGRQV 85
>gi|440471788|gb|ELQ40733.1| ribonuclease H [Magnaporthe oryzae Y34]
gi|440479505|gb|ELQ60268.1| ribonuclease H [Magnaporthe oryzae P131]
Length = 341
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHAL 61
PD V+TDG+ NGK ++AG GV+FG +P N++ ++ G TN AE+ + AL
Sbjct: 183 PDGMTEVYTDGSSMGNGKKNSAAGIGVFFGLGDPRNLSEQLHNGPQTNQRAELTAILRAL 242
Query: 62 KQAKSANEKVKL 73
Q+ ANE V++
Sbjct: 243 -QSLGANEGVRI 253
>gi|170042117|ref|XP_001848784.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167865652|gb|EDS29035.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 256
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 12 DGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANEKV 71
DG+ NG A AG GVYFGE + LN V+GR TNN E Q A A++ AK V
Sbjct: 16 DGSWEGNGTAAACAGLGVYFGEGHTLNA---VSGRATNNCREFQAAALAIRLAKQQGITV 72
Query: 72 K 72
K
Sbjct: 73 K 73
>gi|393238316|gb|EJD45853.1| ribonuclease H-like protein, partial [Auricularia delicata
TFB-10046 SS5]
Length = 202
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIH 59
+D N + V+TDG+C GK A+AG GVY+G + LN+A ++ G TNN AE+ +
Sbjct: 59 IDDPNPIRVYTDGSCVNPGKDDAAAGIGVYWGPGSMLNIAERLPGVAQTNNRAELFAILR 118
Query: 60 ALKQA 64
AL+ A
Sbjct: 119 ALEIA 123
>gi|170044155|ref|XP_001849722.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167867419|gb|EDS30802.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 188
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 12 DGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANEKV 71
DG+C NG A +G GVYFGE + LN V+GR TNN E + A++ AK K
Sbjct: 97 DGSCEGNGTAVACSGLGVYFGEGHALNA---VSGRATNNCGEFKADALAIRFAKQHGIKR 153
Query: 72 KLKRSYNDTHAQKKVRN 88
KR+ +K V+N
Sbjct: 154 LTKRNAWKLSTEKPVKN 170
>gi|357289666|gb|AET72979.1| ribonuclease H [Phaeocystis globosa virus 12T]
gi|357292464|gb|AET73800.1| hypothetical protein PGBG_00092 [Phaeocystis globosa virus 14T]
Length = 220
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
V+TDG+C NG A AG G++FG N+ NV+ K+ G+ TNN AE+ I
Sbjct: 78 VYTDGSCHSNGYPNAKAGIGIFFGINDERNVSRKLEGKQTNNAAELTAIIET 129
>gi|392565013|gb|EIW58190.1| hypothetical protein TRAVEDRAFT_124253, partial [Trametes
versicolor FP-101664 SS1]
Length = 325
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P V V+TDG+C NG A+AG G YFGE + N A +V GR +N G I+A+
Sbjct: 252 PSESVTVYTDGSCNDNGCENAAAGSGAYFGEGDTRNTAARVPGRTQSNQ---TGEIYAVA 308
Query: 63 QAKS 66
A +
Sbjct: 309 LAAA 312
>gi|157864171|ref|XP_001680798.1| putative ribonuclease H1 [Leishmania major strain Friedlin]
gi|68124090|emb|CAJ02072.1| putative ribonuclease H1 [Leishmania major strain Friedlin]
Length = 250
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKV--TGRVTNNNAEIQGAIH 59
P VV+ DGAC NG A AGYG Y+G ++P N + V T TNN E++ IH
Sbjct: 27 PGAFEVVYVDGACSHNGTSQARAGYGGYYGSMSDPRNFSCPVPLTESQTNNRGEVRAVIH 86
Query: 60 ALKQA 64
A+ QA
Sbjct: 87 AIVQA 91
>gi|56713260|gb|AAW23357.1| ribonuclease HI [Leishmania major]
Length = 381
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKV--TGRVTNNNAEIQGAIH 59
P VV+ DGAC NG A AGYG Y+G ++P N + V T TNN E++ IH
Sbjct: 158 PGAFEVVYVDGACSHNGTSQARAGYGGYYGSMSDPRNFSCPVPLTESQTNNRGEVRAVIH 217
Query: 60 ALKQA 64
A+ QA
Sbjct: 218 AIVQA 222
>gi|237844543|ref|XP_002371569.1| ribonuclease H, putative [Toxoplasma gondii ME49]
gi|211969233|gb|EEB04429.1| ribonuclease H, putative [Toxoplasma gondii ME49]
Length = 657
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 VFTDGACPRNGK-VGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALKQAKS 66
++TDGAC NG+ A AG GV+FG+ +P NV+ ++TG+ TN AE+Q + AL K+
Sbjct: 360 IYTDGACRSNGRGKEAKAGVGVFFGDGDPRNVSRRLTGQPQTNQRAELQAILDALVLLKA 419
Query: 67 ANE 69
E
Sbjct: 420 WEE 422
>gi|341888708|gb|EGT44643.1| hypothetical protein CAEBREN_12686 [Caenorhabditis brenneri]
Length = 169
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V+TDG+C G A +GV++GE +P N GK+TG + AE+ A +A+KQA
Sbjct: 81 VWTDGSCYNQGFAEPRAAFGVFWGEGHPNNHNGKITGVNDSTRAELFAACYAIKQA 136
>gi|221481155|gb|EEE19560.1| ribonuclease H, putative [Toxoplasma gondii GT1]
Length = 657
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 VFTDGACPRNGK-VGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALKQAKS 66
++TDGAC NG+ A AG GV+FG+ +P NV+ ++TG+ TN AE+Q + AL K+
Sbjct: 360 IYTDGACRSNGRGKEAKAGVGVFFGDGDPRNVSRRLTGQPQTNQRAELQAILDALVLLKA 419
Query: 67 ANE 69
E
Sbjct: 420 WEE 422
>gi|146070838|ref|XP_001463111.1| putative ribonuclease H1 [Leishmania infantum JPCM5]
gi|134067194|emb|CAM65460.1| putative ribonuclease H1 [Leishmania infantum JPCM5]
Length = 250
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKV--TGRVTNNNAEIQGAIH 59
P VV+ DGAC NG A AGYG Y+G ++P N + V T TNN E++ IH
Sbjct: 27 PGAFEVVYVDGACSHNGTSHARAGYGGYYGSMSDPRNFSCPVPLTESQTNNRGEVRAVIH 86
Query: 60 ALKQA 64
A+ QA
Sbjct: 87 AIVQA 91
>gi|322510768|gb|ADX06082.1| putative ribonuclease H [Organic Lake phycodnavirus 1]
Length = 203
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D + V+ DG+C NG++ + G G+YFGEN+ NV+ ++ G TNN AE+ I
Sbjct: 55 SDADLYVYCDGSCIHNGQIYSKTGIGIYFGENDIRNVSKQINGH-TNNVAELVAMIEVF 112
>gi|398010279|ref|XP_003858337.1| ribonuclease H1, putative [Leishmania donovani]
gi|322496544|emb|CBZ31613.1| ribonuclease H1, putative [Leishmania donovani]
Length = 250
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKV--TGRVTNNNAEIQGAIH 59
P VV+ DGAC NG A AGYG Y+G ++P N + V T TNN E++ IH
Sbjct: 27 PGAFEVVYVDGACSHNGTSHARAGYGGYYGSMSDPRNFSCPVPLTESQTNNRGEVRAVIH 86
Query: 60 ALKQA 64
A+ QA
Sbjct: 87 AIVQA 91
>gi|451994754|gb|EMD87223.1| hypothetical protein COCHEDRAFT_1197382 [Cochliobolus
heterostrophus C5]
Length = 448
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
+VV TDG NGKVGA AG GVYFG +P NV + G R TN AE+ AL
Sbjct: 232 LVVHTDGGSRGNGKVGARAGVGVYFGPRDPRNVGEPLRGERQTNQRAELVAIARAL 287
>gi|451846607|gb|EMD59916.1| hypothetical protein COCSADRAFT_164090 [Cochliobolus sativus
ND90Pr]
Length = 448
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
+VV TDG NGKVGA AG GVYFG +P NV + G R TN AE+ AL
Sbjct: 232 LVVHTDGGSRGNGKVGARAGVGVYFGPRDPRNVGEPLRGERQTNQRAELVAIARAL 287
>gi|268536398|ref|XP_002633334.1| Hypothetical protein CBG06073 [Caenorhabditis briggsae]
Length = 146
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P+ HV +TDG+C G A AGYGVY+G+ + N +G V+G +N AE++ A A++
Sbjct: 7 PNPHV--YTDGSCRNQGTPNAQAGYGVYWGQGHANNRSGTVSGHQDSNRAELRAAQQAIQ 64
Query: 63 QA 64
A
Sbjct: 65 TA 66
>gi|380475734|emb|CCF45096.1| hypothetical protein CH063_14289 [Colletotrichum higginsianum]
Length = 352
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 1 MDPDNHVV--VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGA 57
++P+ + V+TDG+ NG G+ AG GVYFG N+P NV+ ++ G + TN AE+
Sbjct: 186 VEPETKIYTQVYTDGSSLGNGTAGSVAGVGVYFGPNDPRNVSERLEGELQTNQRAELTAI 245
Query: 58 IHALK 62
+ A +
Sbjct: 246 LRAFQ 250
>gi|322710650|gb|EFZ02224.1| RNase H domain protein [Metarhizium anisopliae ARSEF 23]
Length = 449
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQA 64
++TDG+ NGK G+ AG GVYFG+ +P NV+ ++ G TN AE+ + AL+ A
Sbjct: 302 IYTDGSSLANGKAGSRAGVGVYFGDGDPRNVSERLVGDPQTNQRAELMAMLRALEIA 358
>gi|322701805|gb|EFY93553.1| RNase H domain protein [Metarhizium acridum CQMa 102]
Length = 448
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQA 64
++TDG+ NGK G+ AG GVYFG+ +P NV+ ++ G TN AE+ + AL+ A
Sbjct: 301 IYTDGSSLANGKAGSRAGVGVYFGDGDPRNVSERLVGDPQTNQRAELMAMLRALEIA 357
>gi|76156706|gb|AAX27858.2| SJCHGC09332 protein [Schistosoma japonicum]
Length = 230
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 23 ASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
A AGYGVY+G ++P NV+ ++ G TNN AEI+ I A+KQA ++
Sbjct: 96 AMAGYGVYWGPSHPWNVSERLEGEQTNNRAEIEAVICAIKQAHASG 141
>gi|341898152|gb|EGT54087.1| hypothetical protein CAEBREN_07681 [Caenorhabditis brenneri]
Length = 112
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
V+TDGAC G A AGYGVY+G+ + N G+VTG +N AE++ A A+K
Sbjct: 4 ATVYTDGACIDQGTGKARAGYGVYWGDGHKNNRFGRVTGPQDSNRAELRAAHQAIK 59
>gi|301608630|ref|XP_002933884.1| PREDICTED: Fanconi anemia group J protein-like [Xenopus (Silurana)
tropicalis]
Length = 1229
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 44/64 (68%), Gaps = 4/64 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ ++ V++VGIPFP+I+D V+LKR YND HA+ +G+ P Q +++
Sbjct: 769 KVSEGLDFSDNNARAVVTVGIPFPNIKDLQVELKRKYNDQHAKSRGL-LPGSQWYEIQAY 827
Query: 152 RSYN 155
R+ N
Sbjct: 828 RALN 831
Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 22/26 (84%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+I+D +V+LKR YND HA+ +
Sbjct: 788 GIPFPNIKDLQVELKRKYNDQHAKSR 813
>gi|226290451|gb|EEH45935.1| ribonuclease H1 [Paracoccidioides brasiliensis Pb18]
Length = 419
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
++TDG+ RNG++GA AG GVYFG + NV+ + G R TN AE+ I AL
Sbjct: 243 IYTDGSSLRNGRMGAKAGVGVYFGPGDKRNVSEPLKGSRQTNQRAELTAIIRAL 296
>gi|225555483|gb|EEH03775.1| RNase H domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 432
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
++TDG+ RNG +GA AG GVYFG + NV+ + G R TN AE+ I AL
Sbjct: 245 IYTDGSSLRNGSMGAKAGVGVYFGPGDERNVSEPLKGSRQTNQRAELTAIIRAL 298
>gi|321476812|gb|EFX87772.1| hypothetical protein DAPPUDRAFT_96634 [Daphnia pulex]
Length = 291
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR--VTNNNAEIQGAIHALKQA 64
V V+TDG C + G A AG GV+FG N+ LN++ + R + + AE++ AI A+K A
Sbjct: 144 VRVYTDGICLQKGHPDAQAGIGVWFGRNHQLNLSEPLDDRDDTSKSAAEVRAAIEAIKIA 203
Query: 65 KS 66
K+
Sbjct: 204 KA 205
>gi|325094793|gb|EGC48103.1| RNase H domain-containing protein [Ajellomyces capsulatus H88]
Length = 429
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
++TDG+ RNG +GA AG GVYFG + NV+ + G R TN AE+ I AL
Sbjct: 245 IYTDGSSLRNGSMGAKAGVGVYFGPGDERNVSEPLKGSRQTNQRAELTAIIRAL 298
>gi|50557008|ref|XP_505912.1| YALI0F26543p [Yarrowia lipolytica]
gi|49651782|emb|CAG78724.1| YALI0F26543p [Yarrowia lipolytica CLIB122]
Length = 281
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
+ +TDGAC NG G GVYFGE +P N +G + G V TN AE+ + AL+
Sbjct: 128 LAYTDGACENNGGHRPKGGIGVYFGELHPCNYSGPLVGDVQTNQRAELSAILKALE 183
>gi|342882723|gb|EGU83323.1| hypothetical protein FOXB_06174 [Fusarium oxysporum Fo5176]
Length = 343
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQ 63
N + ++TDG+ NG+ G+ AG GVYFG N+ N+A ++ G TN AE+ + AL+
Sbjct: 190 NLLKIWTDGSSLANGQAGSRAGLGVYFGPNDKRNLAERLPGEPQTNQRAELMAILRALEI 249
Query: 64 AKSANE 69
A S +
Sbjct: 250 APSTQD 255
>gi|154287076|ref|XP_001544333.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407974|gb|EDN03515.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 432
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
++TDG+ RNG +GA AG GVYFG + NV+ + G R TN AE+ I AL
Sbjct: 245 IYTDGSSLRNGSMGAKAGVGVYFGPGDERNVSEPLKGSRQTNQRAELTAIIRAL 298
>gi|322510672|gb|ADX05986.1| putative ribonuclease H [Organic Lake phycodnavirus 1]
Length = 203
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D + V+ DG+C NG+ + G G+YFGEN+ NV+ ++ G TNN AE+ I
Sbjct: 55 SDADLYVYCDGSCIHNGQTYSKTGIGIYFGENDIRNVSKQINGH-TNNVAELVAMIEVF 112
>gi|261192988|ref|XP_002622900.1| RNase H domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239589035|gb|EEQ71678.1| RNase H domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239613618|gb|EEQ90605.1| RNase H domain-containing protein [Ajellomyces dermatitidis ER-3]
Length = 434
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
++TDG+ RNG +GA AG GVYFG + NV+ + G R TN AE+ I AL
Sbjct: 245 IYTDGSSLRNGAMGAKAGIGVYFGPGDERNVSEPLKGSRQTNQRAELTAIIRAL 298
>gi|68473603|ref|XP_719126.1| hypothetical protein CaO19.5564 [Candida albicans SC5314]
gi|46440930|gb|EAL00231.1| hypothetical protein CaO19.5564 [Candida albicans SC5314]
Length = 232
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG------RVTNNNAEIQGAIHALK 62
V+ DGAC NG+ A GYGVY+G+ +P NV+ + R TN AE+ HALK
Sbjct: 57 VYVDGACRNNGRENAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALK 116
>gi|68473370|ref|XP_719243.1| hypothetical protein CaO19.13010 [Candida albicans SC5314]
gi|46441053|gb|EAL00353.1| hypothetical protein CaO19.13010 [Candida albicans SC5314]
Length = 232
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG------RVTNNNAEIQGAIHALK 62
V+ DGAC NG+ A GYGVY+G+ +P NV+ + R TN AE+ HALK
Sbjct: 57 VYVDGACRNNGRENAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALK 116
>gi|341891404|gb|EGT47339.1| hypothetical protein CAEBREN_01466 [Caenorhabditis brenneri]
Length = 229
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V+TDG+C NGK+ A A GV++ N + KV G NN AE+ A+HA+ QA
Sbjct: 44 VYTDGSCSFNGKMNARAAIGVWWKYEPQNNHSEKVDGIQENNRAELAAAVHAIDQA 99
>gi|336259183|ref|XP_003344395.1| hypothetical protein SMAC_08988 [Sordaria macrospora k-hell]
gi|380089306|emb|CCC12865.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 326
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIH 59
+D V+++TDG+ NGKVGA AG GVYF N++ ++ G V TN AE+ +
Sbjct: 171 LDATKPVIIYTDGSARGNGKVGAMAGVGVYFCGGFRENISERLQGPVQTNQRAELTAVLR 230
Query: 60 ALK 62
AL+
Sbjct: 231 ALE 233
>gi|238883080|gb|EEQ46718.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 465
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG------RVTNNNAEIQGAIHALK 62
V+ DGAC NG+ A GYGVY+G+ +P NV+ + R TN AE+ HALK
Sbjct: 290 VYVDGACRNNGRENAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALK 349
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-----TGRV-TNNNAEIQGAIHALK 62
++ DGAC NG A AGYGVY+G+ + NV+ + G + TN AE+ HAL+
Sbjct: 57 IYVDGACRYNGCPHAEAGYGVYYGDGDSRNVSVPLDDVDPDGIIPTNQRAELWAMNHALR 116
>gi|431890862|gb|ELK01741.1| Fanconi anemia group J protein [Pteropus alecto]
Length = 1164
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H+Q +G+ P Q +++ R+ N
Sbjct: 779 VITIGIPFPNVKDLQVELKRRYNDQHSQLRGL-LPGRQWYEIQAYRALN 826
Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H+Q
Sbjct: 783 GIPFPNVKDLQVELKRRYNDQHSQ 806
>gi|341898151|gb|EGT54086.1| hypothetical protein CAEBREN_19329 [Caenorhabditis brenneri]
Length = 68
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
V+TDGAC G A AGYGV++G+ + N G+VTG +N AE++ A A+K
Sbjct: 4 ATVYTDGACLDQGTKNARAGYGVFWGDGHKNNRFGRVTGPQDSNRAELRAAHQAIK 59
>gi|336467695|gb|EGO55859.1| hypothetical protein NEUTE1DRAFT_86567 [Neurospora tetrasperma FGSC
2508]
gi|350287648|gb|EGZ68884.1| hypothetical protein NEUTE2DRAFT_93439 [Neurospora tetrasperma FGSC
2509]
Length = 327
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHA 60
D V+++TDG+ NGKVGA AG GVYF N++ ++ G V TN AE+ + A
Sbjct: 173 DASKPVIIYTDGSARGNGKVGAMAGVGVYFCGGFRENISERLQGPVQTNQRAELTAVLRA 232
Query: 61 LK 62
L+
Sbjct: 233 LE 234
>gi|221501867|gb|EEE27620.1| ribonuclease H, putative [Toxoplasma gondii VEG]
Length = 657
Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 VFTDGACPRNGK-VGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALKQAKS 66
++TDGAC NG+ A AG GV+FG+ +P NV+ ++ G+ TN AE+Q + AL K+
Sbjct: 360 IYTDGACRSNGRGKEAKAGVGVFFGDGDPRNVSRRLMGQPQTNQRAELQAILDALVLLKA 419
Query: 67 ANE 69
E
Sbjct: 420 WEE 422
>gi|85093608|ref|XP_959725.1| hypothetical protein NCU05750 [Neurospora crassa OR74A]
gi|28921176|gb|EAA30489.1| predicted protein [Neurospora crassa OR74A]
Length = 327
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHA 60
D V+++TDG+ NGKVGA AG GVYF N++ ++ G V TN AE+ + A
Sbjct: 173 DASKPVIIYTDGSARGNGKVGAMAGVGVYFCGGFRENISERLQGPVQTNQRAELTAVLRA 232
Query: 61 LK 62
L+
Sbjct: 233 LE 234
>gi|149236507|ref|XP_001524131.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452507|gb|EDK46763.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 321
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 9 VFTDGACPRNGKV-GASAGYGVYFGENNPLNVAGKV-------TGRVTNNNAEIQGAIHA 60
++TDGA NGK A++GYGVY+G N+P N A + T TN AE+ HA
Sbjct: 150 IYTDGASRGNGKSRTAASGYGVYYGRNDPRNAAVPLSSVDDIHTVAPTNQRAELHAIHHA 209
Query: 61 LKQAKSANEKVKLKRSYNDTHAQKKVRNVSSVAMRIAQKVDYISHDVI------SVGIPF 114
LK +K + + T Q + + S AM Q VD S+ + + G P
Sbjct: 210 LKN-------IKNELATAPTGKQYSIHSDSKYAM---QCVDEWSNKWLKNGWTNTAGKPV 259
Query: 115 PS--IQDENVKLKRSYNDTHAQKKGIPF 140
+ I E V+LK N+ H Q+ P
Sbjct: 260 ANADIIKEAVQLKNEINEIHQQRGHQPL 287
>gi|170056261|ref|XP_001863950.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876019|gb|EDS39402.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 123
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 12 DGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANEKV 71
DG+C NG A G GVYFGE + LN V+GR TNN E + A A++ AK K
Sbjct: 34 DGSCEGNGTAVACFGLGVYFGEGHALNA---VSGRATNNCGEFKAAALAIRFAKQHGIKR 90
Query: 72 KLKRSYNDTHAQKKVRN 88
K + +K V+N
Sbjct: 91 LTKWNAWKLSTEKPVKN 107
>gi|148683832|gb|EDL15779.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_a [Mus
musculus]
Length = 901
Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI+VGIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 509 VITVGIPFPNVKDLQVELKRQYNDHHSKSRGL-LPGRQWYEIQAYRALN 556
Score = 39.7 bits (91), Expect = 0.67, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+++D +V+LKR YND H++ +
Sbjct: 513 GIPFPNVKDLQVELKRQYNDHHSKSR 538
>gi|164660740|ref|XP_001731493.1| hypothetical protein MGL_1676 [Malassezia globosa CBS 7966]
gi|159105393|gb|EDP44279.1| hypothetical protein MGL_1676 [Malassezia globosa CBS 7966]
Length = 304
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 8/65 (12%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPL----NVAGKVTGRV-TNNNAEIQGA 57
PD ++V+TDG+ NGK G+ AGYGVY+ + PL NVA ++ G V TNN AE+
Sbjct: 152 PD-EIIVYTDGSSHGNGKRGSIAGYGVYWAD--PLYHRQNVAARLPGPVQTNNRAELTAI 208
Query: 58 IHALK 62
+ A++
Sbjct: 209 LIAIR 213
>gi|26348753|dbj|BAC38016.1| unnamed protein product [Mus musculus]
Length = 421
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + VI+VGIPFP+++D V+LKR YND H++ +G+ P Q +++
Sbjct: 14 KVSEGLDFSDDNARAVITVGIPFPNVKDLQVELKRQYNDHHSKSRGL-LPGRQWYEIQAY 72
Query: 152 RSYN 155
R+ N
Sbjct: 73 RALN 76
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+++D +V+LKR YND H++ +
Sbjct: 33 GIPFPNVKDLQVELKRQYNDHHSKSR 58
>gi|74138560|dbj|BAE41179.1| unnamed protein product [Mus musculus]
gi|74216986|dbj|BAE26603.1| unnamed protein product [Mus musculus]
Length = 898
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI+VGIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 782 VITVGIPFPNVKDLQVELKRQYNDHHSKSRGL-LPGRQWYEIQAYRALN 829
Score = 39.3 bits (90), Expect = 0.76, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+++D +V+LKR YND H++ +
Sbjct: 786 GIPFPNVKDLQVELKRQYNDHHSKSR 811
>gi|121701987|ref|XP_001269258.1| reverse transcriptase, RNaseH, putative [Aspergillus clavatus NRRL
1]
gi|119397401|gb|EAW07832.1| reverse transcriptase, RNaseH, putative [Aspergillus clavatus NRRL
1]
Length = 208
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLN--VAGKVTGRVTNNNAEIQGAIHAL 61
+VV DGAC NG+ A A GVY+G NN N + T R TN AE+Q + AL
Sbjct: 55 IVVAVDGACLYNGRAQARASLGVYWGANNYFNTGIVLDPTDRQTNQVAELQACLEAL 111
>gi|407920528|gb|EKG13719.1| hypothetical protein MPH_09185 [Macrophomina phaseolina MS6]
Length = 464
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLN----VAGKVTGRVTNNNAEIQGAIHA 60
N V++ DGAC RNG+ A A V+F + +P N +AG + T+ AE+ GAI A
Sbjct: 67 NSVLIAIDGACRRNGRSDAIAACAVFFSKESPYNEAHVLAGDGSTPATSQRAELMGAIKA 126
Query: 61 LKQA 64
L+ A
Sbjct: 127 LEAA 130
>gi|365986589|ref|XP_003670126.1| hypothetical protein NDAI_0E00670 [Naumovozyma dairenensis CBS 421]
gi|343768896|emb|CCD24883.1| hypothetical protein NDAI_0E00670 [Naumovozyma dairenensis CBS 421]
Length = 353
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALK 62
V+ DG+ NGK GA AGYGV+F LN++ ++ G TNN EIQ ALK
Sbjct: 195 VYCDGSSLGNGKYGARAGYGVFFETQPSLNISDRLRIGAQTNNRGEIQAVSEALK 249
>gi|30795235|ref|NP_840094.1| Fanconi anemia group J protein homolog [Mus musculus]
gi|78099253|sp|Q5SXJ3.1|FANCJ_MOUSE RecName: Full=Fanconi anemia group J protein homolog; Short=Protein
FACJ; AltName: Full=ATP-dependent RNA helicase BRIP1;
AltName: Full=BRCA1-associated C-terminal helicase 1;
AltName: Full=BRCA1-interacting protein C-terminal
helicase 1; Short=BRCA1-interacting protein 1
gi|62740250|gb|AAH94252.1| BRCA1 interacting protein C-terminal helicase 1 [Mus musculus]
Length = 1174
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI+VGIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 782 VITVGIPFPNVKDLQVELKRQYNDHHSKSRGL-LPGRQWYEIQAYRALN 829
Score = 39.3 bits (90), Expect = 0.82, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+++D +V+LKR YND H++ +
Sbjct: 786 GIPFPNVKDLQVELKRQYNDHHSKSR 811
>gi|148683833|gb|EDL15780.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_b [Mus
musculus]
Length = 1180
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI+VGIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 788 VITVGIPFPNVKDLQVELKRQYNDHHSKSRGL-LPGRQWYEIQAYRALN 835
Score = 39.3 bits (90), Expect = 0.82, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+++D +V+LKR YND H++ +
Sbjct: 792 GIPFPNVKDLQVELKRQYNDHHSKSR 817
>gi|449269835|gb|EMC80576.1| Fanconi anemia group J protein like protein [Columba livia]
Length = 1261
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 51 NAEIQGAIHALKQAKSANEKVKLKRSYNDTHAQKKVRN----VSSVAMRIAQKVDYISHD 106
N E+ + A Q + ++ +L + Y D K R+ ++ ++++ +D+ +
Sbjct: 729 NLELVKTVIAEPQGGAKSDFDELLKIYYDAIKCKGERDGALLIAVCRGKVSEGLDFCDEN 788
Query: 107 ---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H +G+ P Q +++ R+ N
Sbjct: 789 ARAVITIGIPFPNVKDLQVELKRKYNDQHKNTRGL-LPGSQWYEIQAYRALN 839
Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+++D +V+LKR YND H +
Sbjct: 796 GIPFPNVKDLQVELKRKYNDQHKNTR 821
>gi|74146859|dbj|BAE41393.1| unnamed protein product [Mus musculus]
Length = 824
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI+VGIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 708 VITVGIPFPNVKDLQVELKRQYNDHHSKSRGL-LPGRQWYEIQAYRALN 755
Score = 39.3 bits (90), Expect = 0.83, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+++D +V+LKR YND H++ +
Sbjct: 712 GIPFPNVKDLQVELKRQYNDHHSKSR 737
>gi|328766726|gb|EGF76779.1| hypothetical protein BATDEDRAFT_28244 [Batrachochytrium
dendrobatidis JAM81]
Length = 206
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAKS 66
V+TDG C NG GA A G++FG + N++ ++ + TNN AE+ I AL+ S
Sbjct: 63 VYTDGGCRANGTKGAQASIGIWFGHADSRNISERLISPIQTNNRAEMTAVIRALQATTS 121
>gi|145238804|ref|XP_001392049.1| RNase H domain protein [Aspergillus niger CBS 513.88]
gi|134076548|emb|CAK39740.1| unnamed protein product [Aspergillus niger]
Length = 410
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P + ++TDG+ +NGK ASAG GVYFG + NV+ + G R TN AE+ + AL
Sbjct: 232 PPGMLRIYTDGSSLKNGKALASAGVGVYFGPGDSRNVSEPLKGSRQTNQRAELTAILRAL 291
>gi|406863200|gb|EKD16248.1| RNase H domain protein [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 405
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQA 64
+ V+TDG+ NG+ GA AG GV+FG + NV+ + G TNN AE+ G + AL+ A
Sbjct: 252 IKVYTDGSALGNGRTGAVAGVGVFFGVGDSRNVSEPLEGMPQTNNRAELTGILRALQIA 310
>gi|302416407|ref|XP_003006035.1| ribonuclease H [Verticillium albo-atrum VaMs.102]
gi|261355451|gb|EEY17879.1| ribonuclease H [Verticillium albo-atrum VaMs.102]
Length = 328
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQA 64
+ ++TDG+ NGKVGA+AG GV+FG ++ N++ ++ G TN AE+ I AL+ A
Sbjct: 178 LAIYTDGSSLANGKVGAAAGVGVFFGVDDARNLSERLEGEPQTNQRAELTAIIRALEIA 236
>gi|350590582|ref|XP_003483098.1| PREDICTED: Fanconi anemia group J protein-like, partial [Sus
scrofa]
Length = 487
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI+VGIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 80 VITVGIPFPNVKDLQVELKRQYNDQHSKVRGL-LPGRQWYEIQAYRALN 127
Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 24/30 (80%), Gaps = 2/30 (6%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKKVRNV 166
GIPFP+++D +V+LKR YND H+ KVR +
Sbjct: 84 GIPFPNVKDLQVELKRQYNDQHS--KVRGL 111
>gi|302697371|ref|XP_003038364.1| hypothetical protein SCHCODRAFT_47645 [Schizophyllum commune H4-8]
gi|300112061|gb|EFJ03462.1| hypothetical protein SCHCODRAFT_47645, partial [Schizophyllum
commune H4-8]
Length = 266
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEI 54
VV+TDGAC NG+ G+ AG GV++G + N++ + G TNN AE+
Sbjct: 122 VVYTDGACSGNGRPGSLAGVGVWYGVGDERNMSERCPGDQTNNRAEL 168
>gi|22760335|dbj|BAC11156.1| unnamed protein product [Homo sapiens]
Length = 375
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 160 VITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAYRALN 207
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+++D +V+LKR YND H++ +
Sbjct: 164 GIPFPNVKDLQVELKRQYNDHHSKLR 189
>gi|344285337|ref|XP_003414418.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein-like
[Loxodonta africana]
Length = 1240
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI+VGIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 764 VITVGIPFPNVKDLQVELKRQYNDQHSKLRGL-LPGRQWYEIQAYRALN 811
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 768 GIPFPNVKDLQVELKRQYNDQHSK 791
>gi|426347270|ref|XP_004041278.1| PREDICTED: Fanconi anemia group J protein-like [Gorilla gorilla
gorilla]
Length = 469
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 254 VITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAYRALN 301
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+++D +V+LKR YND H++ +
Sbjct: 258 GIPFPNVKDLQVELKRQYNDHHSKLR 283
>gi|351703518|gb|EHB06437.1| Fanconi anemia group J protein [Heterocephalus glaber]
Length = 836
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++
Sbjct: 434 KVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAY 492
Query: 152 RSYN 155
R+ N
Sbjct: 493 RALN 496
Score = 38.9 bits (89), Expect = 0.96, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 453 GIPFPNVKDLQVELKRQYNDHHSK 476
>gi|320582980|gb|EFW97197.1| Ribonuclease H1 [Ogataea parapolymorpha DL-1]
Length = 176
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 8 VVFTDGACPRNGKVG-ASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
++TDGAC N A AGYGV+FG+ +P N A + G V TNN AE+ AL+
Sbjct: 15 TIYTDGACSFNHDPSRAKAGYGVFFGDGDPRNTAAPLAGPVQTNNRAELSAIKQALE 71
>gi|432092892|gb|ELK25255.1| Fanconi anemia group J protein [Myotis davidii]
Length = 1114
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 647 VITIGIPFPNVKDLQVELKRQYNDQHSKLRGL-LPGRQWYEIQAYRALN 694
Score = 39.3 bits (90), Expect = 0.88, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 651 GIPFPNVKDLQVELKRQYNDQHSK 674
>gi|361131383|gb|EHL03081.1| putative Ribonuclease H [Glarea lozoyensis 74030]
Length = 314
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
V+TDG+ NGK A AG GVYFG ++ N++ ++ G + TN AE+ G + AL+
Sbjct: 165 VWTDGSARGNGKANAEAGVGVYFGYDDERNLSERLAGDLQTNQRAELTGILRALE 219
>gi|301777952|ref|XP_002924394.1| PREDICTED: Fanconi anemia group J protein-like [Ailuropoda
melanoleuca]
gi|281342514|gb|EFB18098.1| hypothetical protein PANDA_013720 [Ailuropoda melanoleuca]
Length = 1249
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 779 VITIGIPFPNVKDLQVELKRQYNDQHSKLRGL-LPGRQWYEIQAYRALN 826
Score = 38.9 bits (89), Expect = 0.96, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 783 GIPFPNVKDLQVELKRQYNDQHSK 806
>gi|50543708|ref|XP_500020.1| YALI0A12705p [Yarrowia lipolytica]
gi|49645885|emb|CAG83949.1| YALI0A12705p [Yarrowia lipolytica CLIB122]
Length = 236
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIH 59
V V+TDGAC N A AG GVYFG +P NV+ V G R TN AE++ AIH
Sbjct: 88 VPVYTDGACHNNQGSNARAGVGVYFGPGHPDNVSRPVQGSRQTNQRAELE-AIH 140
>gi|50543706|ref|XP_500019.1| YALI0A12683p [Yarrowia lipolytica]
gi|49645884|emb|CAG83948.1| YALI0A12683p [Yarrowia lipolytica CLIB122]
Length = 276
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAI 58
V+ DGA RNG+ G AG GV+FG NP+NV+ + G + + + AI
Sbjct: 149 VYVDGAYARNGQGGPQAGVGVWFGRCNPMNVSEPLAGPIQTSQRAVLAAI 198
>gi|345805276|ref|XP_852649.2| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Canis lupus familiaris]
Length = 1247
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 778 VITIGIPFPNVKDLQVELKRQYNDQHSKLRGL-LPGRQWYEIQAYRALN 825
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 782 GIPFPNVKDLQVELKRQYNDQHSK 805
>gi|74271901|ref|NP_001028230.1| Fanconi anemia group J protein homolog [Gallus gallus]
gi|78099252|sp|Q3YK19.1|FANCJ_CHICK RecName: Full=Fanconi anemia group J protein homolog; Short=Protein
FACJ; AltName: Full=ATP-dependent RNA helicase BRIP1
gi|72199300|gb|AAZ66861.1| BRIP1 [Gallus gallus]
Length = 1252
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + VI++GIPFP+++D V+LKR YND H +G+ P Q +++
Sbjct: 774 KVSEGLDFCDENARAVITIGIPFPNVKDLQVELKRKYNDQHKTTRGL-LPGSQWYEIQAY 832
Query: 152 RSYN 155
R+ N
Sbjct: 833 RALN 836
Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+++D +V+LKR YND H +
Sbjct: 793 GIPFPNVKDLQVELKRKYNDQHKTTR 818
>gi|326931537|ref|XP_003211885.1| PREDICTED: Fanconi anemia group J protein homolog [Meleagris
gallopavo]
Length = 1257
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + VI++GIPFP+++D V+LKR YND H +G+ P Q +++
Sbjct: 775 KVSEGLDFCDENARAVITIGIPFPNVKDLQVELKRKYNDQHKTTRGL-LPGSQWYEIQAY 833
Query: 152 RSYN 155
R+ N
Sbjct: 834 RALN 837
Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+++D +V+LKR YND H +
Sbjct: 794 GIPFPNVKDLQVELKRKYNDQHKTTR 819
>gi|348567428|ref|XP_003469501.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein-like
[Cavia porcellus]
Length = 1209
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 778 VITIGIPFPNVKDLQVELKRKYNDHHSKLRGL-LPGRQWYEIQAYRALN 825
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 782 GIPFPNVKDLQVELKRKYNDHHSK 805
>gi|334322387|ref|XP_001363088.2| PREDICTED: Fanconi anemia group J protein [Monodelphis domestica]
Length = 1179
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++
Sbjct: 713 KVSEGLDFSDENARAVITIGIPFPNMKDLQVELKRKYNDQHSKLRGL-LPGRQWYEIQAY 771
Query: 152 RSYN 155
R+ N
Sbjct: 772 RALN 775
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 732 GIPFPNMKDLQVELKRKYNDQHSK 755
>gi|253994026|gb|ACT52883.1| RNase H [Polyporus grammocephalus]
Length = 243
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHA 60
P+ +VV+TDG+C R AG GV+FG ++P N+A +V + TN AE+ A
Sbjct: 169 PEEPLVVYTDGSCVREATGAPEAGSGVWFGVDDPRNLAARVPDEINQTNQVAEMYAVNLA 228
Query: 61 L 61
L
Sbjct: 229 L 229
>gi|196010473|ref|XP_002115101.1| hypothetical protein TRIADDRAFT_28584 [Trichoplax adhaerens]
gi|190582484|gb|EDV22557.1| hypothetical protein TRIADDRAFT_28584 [Trichoplax adhaerens]
Length = 173
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
+V+ DG C NG A AG G+Y+ N +V+ +++G+ TN AE+ A AL+ A
Sbjct: 29 IVYCDGCCFNNGFQNARAGIGIYWSYPNLSSVSERLSGKQTNQRAELVAACKALESASDH 88
Query: 68 N-EKVKLK 74
N E ++++
Sbjct: 89 NLETIEIR 96
>gi|242807454|ref|XP_002484959.1| ribonuclease H, putative [Talaromyces stipitatus ATCC 10500]
gi|218715584|gb|EED15006.1| ribonuclease H, putative [Talaromyces stipitatus ATCC 10500]
Length = 419
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P + ++TDG+ NGK A AG GVYFG N+ NV+ + G R TN AE+ I AL
Sbjct: 236 PPGMLRIYTDGSSLGNGKKIAQAGVGVYFGPNDTRNVSEPLKGHRQTNQRAELTAIIRAL 295
Query: 62 KQA 64
+ A
Sbjct: 296 EIA 298
>gi|403274761|ref|XP_003929130.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Saimiri boliviensis boliviensis]
Length = 1252
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 779 VITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAYRALN 826
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 783 GIPFPNVKDLQVELKRQYNDHHSK 806
>gi|332258882|ref|XP_003278520.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Nomascus leucogenys]
Length = 1248
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 779 VITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAYRALN 826
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 783 GIPFPNVKDLQVELKRQYNDHHSK 806
>gi|57012613|sp|Q9BX63.1|FANCJ_HUMAN RecName: Full=Fanconi anemia group J protein; Short=Protein FACJ;
AltName: Full=ATP-dependent RNA helicase BRIP1; AltName:
Full=BRCA1-associated C-terminal helicase 1; AltName:
Full=BRCA1-interacting protein C-terminal helicase 1;
Short=BRCA1-interacting protein 1
gi|13661819|gb|AAK38111.1|AF360549_1 BRCA1-binding helicase-like protein BACH1 [Homo sapiens]
gi|75516497|gb|AAI01473.1| BRCA1 interacting protein C-terminal helicase 1 [Homo sapiens]
gi|75516501|gb|AAI01475.1| BRCA1 interacting protein C-terminal helicase 1 [Homo sapiens]
gi|313883612|gb|ADR83292.1| BRCA1 interacting protein C-terminal helicase 1 [synthetic
construct]
Length = 1249
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 779 VITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAYRALN 826
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 783 GIPFPNVKDLQVELKRQYNDHHSK 806
>gi|296201899|ref|XP_002806878.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Callithrix jacchus]
Length = 1252
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 779 VITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAYRALN 826
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 783 GIPFPNVKDLQVELKRQYNDHHSK 806
>gi|170042670|ref|XP_001849040.1| ribonuclease H1 [Culex quinquefasciatus]
gi|167866167|gb|EDS29550.1| ribonuclease H1 [Culex quinquefasciatus]
Length = 125
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 12 DGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANEKV 71
DG+C NG A G GVYFGE + LN V+GR TNN E + A A++ K K
Sbjct: 34 DGSCEGNGTAVACFGLGVYFGEGHALNA---VSGRATNNCGEFKAAALAIRFTKQHGIKR 90
Query: 72 KLKRSYNDTHAQKKVRN 88
K + +K V+N
Sbjct: 91 LTKWNAWKLSTEKPVKN 107
>gi|114669761|ref|XP_511607.2| PREDICTED: Fanconi anemia group J protein [Pan troglodytes]
gi|410223276|gb|JAA08857.1| BRCA1 interacting protein C-terminal helicase 1 [Pan troglodytes]
gi|410257750|gb|JAA16842.1| BRCA1 interacting protein C-terminal helicase 1 [Pan troglodytes]
gi|410303552|gb|JAA30376.1| BRCA1 interacting protein C-terminal helicase 1 [Pan troglodytes]
gi|410331379|gb|JAA34636.1| BRCA1 interacting protein C-terminal helicase 1 [Pan troglodytes]
Length = 1249
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 779 VITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAYRALN 826
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 783 GIPFPNVKDLQVELKRQYNDHHSK 806
>gi|212538155|ref|XP_002149233.1| ribonuclease H, putative [Talaromyces marneffei ATCC 18224]
gi|210068975|gb|EEA23066.1| ribonuclease H, putative [Talaromyces marneffei ATCC 18224]
Length = 420
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P + ++TDG+ NGK A AG GVYFG N+ NV+ + G R TN AE+ I AL
Sbjct: 237 PPGMLRIYTDGSSLGNGKKVAQAGVGVYFGPNDTRNVSEPLKGHRQTNQRAELTAIIRAL 296
Query: 62 KQA 64
+ A
Sbjct: 297 EIA 299
>gi|297715610|ref|XP_002834155.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Pongo abelii]
Length = 1248
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 779 VITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAYRALN 826
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 783 GIPFPNVKDLQVELKRQYNDHHSK 806
>gi|301897118|ref|NP_114432.2| Fanconi anemia group J protein [Homo sapiens]
gi|119571815|gb|EAW51430.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_a
[Homo sapiens]
gi|119571816|gb|EAW51431.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_a
[Homo sapiens]
gi|119571817|gb|EAW51432.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_a
[Homo sapiens]
gi|119571818|gb|EAW51433.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_a
[Homo sapiens]
Length = 1249
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 779 VITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAYRALN 826
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 783 GIPFPNVKDLQVELKRQYNDHHSK 806
>gi|397486822|ref|XP_003814520.1| PREDICTED: Fanconi anemia group J protein [Pan paniscus]
Length = 1249
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 779 VITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAYRALN 826
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 783 GIPFPNVKDLQVELKRQYNDHHSK 806
>gi|326480360|gb|EGE04370.1| hypothetical protein TEQG_08665 [Trichophyton equinum CBS 127.97]
Length = 243
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQ 63
+ +V+ DGAC NG A AG G+YFG + N++ + TN AE+ AI AL+
Sbjct: 88 DSIVIAVDGACSNNGTPYAQAGLGIYFGSRSSFNISLALDIDEPTNQKAELMAAIGALQM 147
Query: 64 AK 65
A+
Sbjct: 148 AR 149
>gi|297462303|ref|XP_002702129.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein [Bos
taurus]
Length = 1232
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
V+++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 777 VVTIGIPFPNVKDLQVELKRQYNDQHSKLRGL-LPGRQWYEIQAYRALN 824
Score = 38.9 bits (89), Expect = 0.96, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 781 GIPFPNVKDLQVELKRQYNDQHSK 804
>gi|169764014|ref|XP_001727907.1| RNase H domain protein [Aspergillus oryzae RIB40]
gi|83770935|dbj|BAE61068.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871201|gb|EIT80366.1| ribonuclease H [Aspergillus oryzae 3.042]
Length = 407
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P + ++TDG+ +NG+ ASAG GVYFG + NV+ + G R TN AE+ + AL
Sbjct: 232 PPGMLRIYTDGSSLKNGRALASAGVGVYFGPGDNRNVSEPLKGSRQTNQRAELTAILRAL 291
>gi|297486418|ref|XP_002695655.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein,
partial [Bos taurus]
gi|296477040|tpg|DAA19155.1| TPA: BRCA1 interacting protein C-terminal helicase 1 [Bos taurus]
Length = 1169
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
V+++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 714 VVTIGIPFPNVKDLQVELKRQYNDQHSKLRGL-LPGRQWYEIQAYRALN 761
Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 718 GIPFPNVKDLQVELKRQYNDQHSK 741
>gi|297272722|ref|XP_002808171.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein-like
[Macaca mulatta]
Length = 1151
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 682 VITIGIPFPNVKDLQVELKRRYNDHHSKLRGL-LPGRQWYEIQAYRALN 729
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 686 GIPFPNVKDLQVELKRRYNDHHSK 709
>gi|149053741|gb|EDM05558.1| BRCA1 interacting protein C-terminal helicase 1 (predicted) [Rattus
norvegicus]
Length = 964
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 776 VITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAYRALN 823
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 780 GIPFPNVKDLQVELKRQYNDHHSK 803
>gi|384488313|gb|EIE80493.1| hypothetical protein RO3G_05198 [Rhizopus delemar RA 99-880]
Length = 133
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLN 38
+V+TDGA NG+ GA AGYGVY+G+N+P N
Sbjct: 92 TIVYTDGASSGNGQKGARAGYGVYWGDNDPRN 123
>gi|393239032|gb|EJD46566.1| ribonuclease H-like protein [Auricularia delicata TFB-10046 SS5]
Length = 390
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 8 VVFTDGACPRNGKVGAS-AGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V++TDGAC NGK A+ AG GV+ E+ ++ + G TNN AE+ I AL+
Sbjct: 86 VLYTDGACSNNGKGAAALAGIGVWSAEDEGRRLSERCPGEQTNNRAELIAIIRALESTPF 145
Query: 67 ANEKVKLK 74
+++ +K
Sbjct: 146 GGKQLLVK 153
>gi|340379357|ref|XP_003388193.1| PREDICTED: hypothetical protein LOC100635447 [Amphimedon
queenslandica]
Length = 1055
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 36/47 (76%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ ++ VI++GIPFP+++DE V LKR YN++H+ +G+
Sbjct: 265 KVSEGLDFADNNARAVITIGIPFPNVKDEQVGLKREYNNSHSYHRGL 311
Score = 39.3 bits (90), Expect = 0.88, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 21/23 (91%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHA 159
GIPFP+++DE+V LKR YN++H+
Sbjct: 284 GIPFPNVKDEQVGLKREYNNSHS 306
>gi|342890532|gb|EGU89335.1| hypothetical protein FOXB_00144 [Fusarium oxysporum Fo5176]
Length = 222
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQ 63
+ + + DGAC NG+ A A GV+FG + N + +T VTN AE+ I ALKQ
Sbjct: 66 DSIFIAVDGACRGNGQANAKAAVGVFFGRRSTYNQSVLLTEPHVTNQIAELSAGILALKQ 125
Query: 64 AK 65
AK
Sbjct: 126 AK 127
>gi|443894222|dbj|GAC71571.1| ribonuclease H [Pseudozyma antarctica T-34]
Length = 370
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGEN--NPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
+V+ DG+ NGK GA AGYGV+F + + LN A ++ G++ TNN AE+ + A++
Sbjct: 219 TIVYCDGSATGNGKKGARAGYGVWFEDQALHHLNEARRLPGKIQTNNRAELLAIVRAIQ 277
>gi|392571118|gb|EIW64290.1| RNase H, partial [Trametes versicolor FP-101664 SS1]
Length = 247
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
++TDG+ NG A+AG G++FG ++P N+A +V G + N A G ++A+ A +A
Sbjct: 180 IYTDGSAMSNGASNATAGSGLWFGPDDPRNIAARVPGPIQTNQA---GELYAIAVAANA 235
>gi|393224565|gb|EJD32906.1| ribonuclease H-like protein, partial [Auricularia delicata
TFB-10046 SS5]
Length = 186
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1 MDPDNHV--VVFTDGACPRNGKVGAS-AGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGA 57
M+ + H+ V+++DGAC NGK GA+ AG GV+ ++ ++ + G TNN AE+
Sbjct: 34 MEDEEHLWDVLYSDGACSNNGKGGAAVAGIGVWSADDQGRRLSERCGGEQTNNRAELIAI 93
Query: 58 IHALKQAKSANEKVKLK 74
I AL+ +++ +K
Sbjct: 94 IRALESTPLGGKQLLVK 110
>gi|354497402|ref|XP_003510809.1| PREDICTED: Fanconi anemia group J protein homolog [Cricetulus
griseus]
gi|344242804|gb|EGV98907.1| Fanconi anemia group J protein-like [Cricetulus griseus]
Length = 1166
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
V++VGIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 774 VVTVGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAYRALN 821
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 778 GIPFPNVKDLQVELKRQYNDHHSK 801
>gi|109488700|ref|XP_340870.3| PREDICTED: Fanconi anemia group J protein homolog [Rattus
norvegicus]
gi|109491562|ref|XP_001081096.1| PREDICTED: Fanconi anemia group J protein homolog [Rattus
norvegicus]
Length = 1166
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 776 VITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAYRALN 823
Score = 38.1 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 780 GIPFPNVKDLQVELKRQYNDHHSK 803
>gi|449550143|gb|EMD41108.1| hypothetical protein CERSUDRAFT_103428 [Ceriporiopsis subvermispora
B]
Length = 246
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENN------PLNVAGKVTGRVTNNNAEIQGAIHAL 61
+VFTDGAC NG+ GA+AG G+ GE + P++ + + ++ AE+ AIHAL
Sbjct: 66 LVFTDGACLSNGQSGATAGIGIAMGELDGRQWSVPIDNSIDSFPKRSSQRAELLAAIHAL 125
Query: 62 KQAKSANEKVKLK 74
+ K L+
Sbjct: 126 RFLSETRIKAALE 138
>gi|346323444|gb|EGX93042.1| ribonuclease H, putative [Cordyceps militaris CM01]
Length = 337
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
+ V+TDG+ NGK GA AG GV+FG + N++ ++ G TN AE+ + AL+
Sbjct: 190 IRVYTDGSSLANGKAGARAGVGVFFGPGDARNISERLEGEPQTNQRAELMAMLRALQ 246
>gi|393235515|gb|EJD43069.1| ribonuclease H-like protein, partial [Auricularia delicata
TFB-10046 SS5]
Length = 189
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
++H+ V+ DG+C G+ ++AG G+ +G + N + +V GR T+ AE+ +HAL
Sbjct: 50 EDHIYVYPDGSCQNPGQSWSAAGAGICWGLGSSRNSSHRVPGRQTSPRAELYAVLHAL 107
>gi|326475292|gb|EGD99301.1| Reverse transcriptase, RNaseH [Trichophyton tonsurans CBS 112818]
Length = 159
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQ 63
+ +V+ DGAC NG A AG G+YFG + N++ + TN AE+ AI AL+
Sbjct: 54 DSIVIAVDGACSNNGTPYAQAGLGIYFGSRSSFNISLALDIDEPTNQKAELMAAIGALQM 113
Query: 64 AK 65
A+
Sbjct: 114 AR 115
>gi|410980592|ref|XP_003996661.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Felis catus]
Length = 1230
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 779 VITIGIPFPNVKDLQVVLKRQYNDQHSKLRGL-LPGRQWYEIQAYRALN 826
Score = 37.7 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V LKR YND H++
Sbjct: 783 GIPFPNVKDLQVVLKRQYNDQHSK 806
>gi|170044850|ref|XP_001850044.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167867969|gb|EDS31352.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 290
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAG 41
D D V V+TDG+ NG A AG GVYFGE + LN G
Sbjct: 144 DEDGFVYVYTDGSWEGNGTAAACAGLGVYFGEGHALNAQG 183
>gi|388857853|emb|CCF48518.1| related to Ribonuclease H [Ustilago hordei]
Length = 328
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNP--LNVAGKVTG---RVTNNNAEIQGAIHAL 61
+V+ DG+C NGK A AGYGVYF +++ L+ + ++ G + TNN AE+ I A+
Sbjct: 119 TIVYVDGSCLHNGKFSARAGYGVYFPDSSLSHLSESRRLPGPPKQQTNNRAELTAIIRAI 178
Query: 62 KQAKSANEKVKLKRSYNDT 80
+ + ++++ Y+D+
Sbjct: 179 QLCPDDDSRLEI---YSDS 194
>gi|344300213|gb|EGW30553.1| hypothetical protein SPAPADRAFT_63394 [Spathaspora passalidarum
NRRL Y-27907]
Length = 286
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 9 VFTDGACPRNGKVGA-SAGYGVYFGENNPLNVAGKVT----GRVTNNNAEIQGAIHALK 62
++ DGAC NGK + SAGYGV++G+ +P N A + G+ TN AE+ HAL+
Sbjct: 119 IYVDGACRGNGKFKSPSAGYGVFYGDKDPRNAAVPLNKVYKGKPTNQRAELYAMNHALE 177
>gi|402899850|ref|XP_003912899.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Papio anubis]
Length = 1248
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
V+++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 779 VVTIGIPFPNVKDLQVELKRRYNDHHSKLRGL-LPGRQWYEIQAYRALN 826
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 783 GIPFPNVKDLQVELKRRYNDHHSK 806
>gi|295659076|ref|XP_002790097.1| ribonuclease H [Paracoccidioides sp. 'lutzii' Pb01]
gi|226281999|gb|EEH37565.1| ribonuclease H [Paracoccidioides sp. 'lutzii' Pb01]
Length = 420
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENN-PLNVAGKVTG-RVTNNNAEIQGAIHAL 61
++TDG+ RNG++GA AG GVYFG + NV+ + G R TN AE+ I AL
Sbjct: 243 IYTDGSSLRNGRMGAKAGVGVYFGPGDKSRNVSEPLKGSRQTNQRAELTAIIRAL 297
>gi|160333450|ref|NP_001103766.1| BRCA1 interacting protein C-terminal helicase 1 [Danio rerio]
gi|126843119|gb|ABO27623.1| Fanconi anemia J [Danio rerio]
Length = 1217
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ + V+++GIPFP+I+D V+LK YND HA+ +G+
Sbjct: 797 KVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDKHAKSRGL 843
Score = 39.3 bits (90), Expect = 0.84, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+I+D +V+LK YND HA+ +
Sbjct: 816 GIPFPNIKDLQVELKMKYNDKHAKSR 841
>gi|296419694|ref|XP_002839432.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635582|emb|CAZ83623.1| unnamed protein product [Tuber melanosporum]
Length = 405
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQA 64
++TDG+ RNGK A AG GV+FG+ + N++ + G R TN+ AE+ + A+ A
Sbjct: 250 IYTDGSALRNGKPSAIAGVGVWFGDKDSRNISEPLPGPRQTNSRAELTAILRAINVA 306
>gi|301106002|ref|XP_002902084.1| ribonuclease, putative [Phytophthora infestans T30-4]
gi|262098704|gb|EEY56756.1| ribonuclease, putative [Phytophthora infestans T30-4]
Length = 317
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 2 DPD----NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQG 56
DPD +V F DG+ NG+ AGY F NVA + V R TNN AE
Sbjct: 152 DPDPKDPKTLVAFCDGSALENGRRKCRAGYACIFPHCEQWNVAKQLVEDRATNNRAEYMA 211
Query: 57 AIHALKQA 64
A+ A+K+A
Sbjct: 212 ALEAMKRA 219
>gi|392570835|gb|EIW64007.1| hypothetical protein TRAVEDRAFT_109655, partial [Trametes
versicolor FP-101664 SS1]
Length = 243
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNA 52
P+ V VFTDG+C NG A AG GV+FGE++ N +V R +N A
Sbjct: 170 PNEAVEVFTDGSCLNNGMSNACAGSGVWFGEHDARNEGVRVPHREQSNQA 219
>gi|255725982|ref|XP_002547917.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133841|gb|EER33396.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 283
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 8 VVFTDGACPRNG-KVGASAGYGVYFGENNPLNVAGKV-------TGRVTNNNAEIQGAIH 59
VV+ DGAC NG K +SAGYGV++G NNP NVA + R TN AE+
Sbjct: 113 VVYIDGACRGNGNKYNSSAGYGVFYGRNNPRNVANPLDLVDRHNDYRPTNQRAELYALCQ 172
Query: 60 AL 61
L
Sbjct: 173 VL 174
>gi|169625445|ref|XP_001806126.1| hypothetical protein SNOG_15995 [Phaeosphaeria nodorum SN15]
gi|111055454|gb|EAT76574.1| hypothetical protein SNOG_15995 [Phaeosphaeria nodorum SN15]
Length = 319
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALK 62
++ +V+ TDG+ RNGK A AG GVYFG N+ N + G+ TN AE+ AL+
Sbjct: 17 ESWLVINTDGSSFRNGKPDAIAGVGVYFGPNDKRNTGQPLGPGKQTNQRAELMAVKIALE 76
Query: 63 QA 64
+A
Sbjct: 77 KA 78
>gi|410928893|ref|XP_003977834.1| PREDICTED: Fanconi anemia group J protein homolog [Takifugu
rubripes]
Length = 1109
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ + V+++GIPFP+I+D V+LK YND HA+ +G+
Sbjct: 731 KVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHAKSRGL 777
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+I+D +V+LK YND HA+ +
Sbjct: 750 GIPFPNIKDLQVELKMKYNDQHAKSR 775
>gi|449295058|gb|EMC91080.1| hypothetical protein BAUCODRAFT_39203, partial [Baudoinia
compniacensis UAMH 10762]
Length = 148
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENN-PLNVAGKVTGR-VTNNNAEIQGAIHALK 62
+ +++ DGAC NG+ A GYG++F NN N A +T TN AE++ A+ ALK
Sbjct: 44 DSIIIAVDGACRNNGRPTARVGYGIFFHRNNHQWNKAVLLTPEDSTNQRAELRAALQALK 103
Query: 63 QAKSANEKVKLKRSYNDTHAQK 84
A KL+R + + Q+
Sbjct: 104 LA------TKLRRLNPELYGQE 119
>gi|170067777|ref|XP_001868615.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167863835|gb|EDS27218.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 443
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNV--AGKVT-GRVTNNNAEIQGAI 58
D D V V+TDG+C NG A AG GVYF E + LN A K++ G++ N + +
Sbjct: 114 DEDGFVYVYTDGSCEGNGTAAARAGMGVYFDEGHALNARNAWKLSMGKLVKNQVDFEELD 173
Query: 59 HALKQAKSANEKVKLK 74
L AN+ +++K
Sbjct: 174 REL-----ANKSIEIK 184
>gi|47224934|emb|CAG06504.1| unnamed protein product [Tetraodon nigroviridis]
Length = 862
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ + V+++GIPFP+I+D V+LK YND HA+ +G+
Sbjct: 724 KVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDHHARSRGL 770
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+I+D +V+LK YND HA+ +
Sbjct: 743 GIPFPNIKDLQVELKMKYNDHHARSR 768
>gi|426238589|ref|XP_004013233.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Ovis aries]
Length = 1234
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
V+++GIPFP+++D V+LK+ YND H++ +G+ P Q +++ R+ N
Sbjct: 777 VVTIGIPFPNVKDLQVELKKQYNDQHSKLRGL-LPGRQWYEIQAYRALN 824
Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LK+ YND H++
Sbjct: 781 GIPFPNVKDLQVELKKQYNDQHSK 804
>gi|121702361|ref|XP_001269445.1| RNase H domain protein [Aspergillus clavatus NRRL 1]
gi|119397588|gb|EAW08019.1| RNase H domain protein [Aspergillus clavatus NRRL 1]
Length = 402
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P + ++TDG+ +NG+ A+AG GVYFG + NV+ + G R TN AE+ + AL
Sbjct: 224 PPGMLRIYTDGSSLKNGRDTAAAGVGVYFGPGDTRNVSEPLQGSRQTNQRAELTAILRAL 283
>gi|395845987|ref|XP_003795698.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Otolemur garnettii]
Length = 1234
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 27/32 (84%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
VI++GIPFP+++D V+LKR YND H++ +G+
Sbjct: 779 VITIGIPFPNVKDLQVELKRKYNDHHSKLRGV 810
Score = 39.3 bits (90), Expect = 0.80, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 2/32 (6%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKKVRNVSS 168
GIPFP+++D +V+LKR YND H+ K+R V S
Sbjct: 783 GIPFPNVKDLQVELKRKYNDHHS--KLRGVLS 812
>gi|224076637|ref|XP_002196566.1| PREDICTED: Fanconi anemia group J protein homolog [Taeniopygia
guttata]
Length = 1249
Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 33/47 (70%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ + V+++GIPFP+++D V+LKR YND H +G+
Sbjct: 776 KVSEGLDFCDENARAVVTIGIPFPNVKDLQVELKRKYNDQHKSTRGL 822
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+++D +V+LKR YND H +
Sbjct: 795 GIPFPNVKDLQVELKRKYNDQHKSTR 820
>gi|400600526|gb|EJP68200.1| ribonuclease H [Beauveria bassiana ARSEF 2860]
Length = 338
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
+ V+TDG+ NGK GA AG GV+FG + N++ ++ G TN AE+ + AL+
Sbjct: 191 IRVYTDGSSLANGKAGARAGVGVFFGPGDERNLSERLEGEPQTNQRAELMAMLRALQ 247
>gi|238489999|ref|XP_002376237.1| ribonuclease H, putative [Aspergillus flavus NRRL3357]
gi|220698625|gb|EED54965.1| ribonuclease H, putative [Aspergillus flavus NRRL3357]
Length = 408
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ +NG+ ASAG GVYFG +N NV+ + G R TN AE+ + A
Sbjct: 232 PPGMLRIYTDGSSLKNGRALASAGVGVYFGPGDNSRNVSEPLKGSRQTNQRAELTAILRA 291
Query: 61 L 61
L
Sbjct: 292 L 292
>gi|366989535|ref|XP_003674535.1| hypothetical protein NCAS_0B00740 [Naumovozyma castellii CBS 4309]
gi|342300399|emb|CCC68158.1| hypothetical protein NCAS_0B00740 [Naumovozyma castellii CBS 4309]
Length = 338
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALK 62
+V+ DG+ NGK + AGYGVYF + N++ ++ G TNN EIQ AL+
Sbjct: 179 IVYCDGSALSNGKSSSRAGYGVYFQDEPEYNISERLRIGEQTNNRGEIQAVSSALE 234
>gi|451992200|gb|EMD84713.1| hypothetical protein COCHEDRAFT_1199323 [Cochliobolus
heterostrophus C5]
gi|451995561|gb|EMD88029.1| hypothetical protein COCHEDRAFT_1197116 [Cochliobolus
heterostrophus C5]
Length = 308
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALK 62
V TDG+ NGK A+AG GVYFG N+P N + G TN AE++ + AL+
Sbjct: 26 VSTDGSSLGNGKKKATAGVGVYFGPNDPRNYGEPLGPGPQTNQRAELKAVLKALQ 80
>gi|156847604|ref|XP_001646686.1| hypothetical protein Kpol_1028p104 [Vanderwaltozyma polyspora DSM
70294]
gi|156117365|gb|EDO18828.1| hypothetical protein Kpol_1028p104 [Vanderwaltozyma polyspora DSM
70294]
Length = 397
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENN--PLNVAGKV-TGRVTNNNAEIQGAIH 59
P + V V+ DG+ NG A AGYGVYF +N LN + ++ TG TNN EI+ +
Sbjct: 233 PADKVRVYCDGSSLHNGTAIARAGYGVYFDHDNYKDLNASERLNTGAQTNNRGEIEAVSN 292
Query: 60 AL 61
AL
Sbjct: 293 AL 294
>gi|70991232|ref|XP_750465.1| ribonuclease H [Aspergillus fumigatus Af293]
gi|66848097|gb|EAL88427.1| ribonuclease H, putative [Aspergillus fumigatus Af293]
gi|159130938|gb|EDP56051.1| ribonuclease H, putative [Aspergillus fumigatus A1163]
Length = 410
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIH 59
+ P + ++TDG+ +NG+ A+AG GV+FG + NV+ + G R TN AE+ +
Sbjct: 233 IGPPGMLRIYTDGSALKNGRDTAAAGVGVFFGPGDTRNVSEPLRGDRQTNQRAELTAILR 292
Query: 60 AL 61
AL
Sbjct: 293 AL 294
>gi|452843791|gb|EME45726.1| hypothetical protein DOTSEDRAFT_34181 [Dothistroma septosporum
NZE10]
Length = 201
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 3 PDNHVVVFTDGACPRNGKVG--ASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIH 59
PD +++ DG CP NGK + GVY G ++PLN + RV TN AE+Q I
Sbjct: 96 PDC-IIITVDGVCPNNGKKSNLIFSAAGVYVGAHSPLNGGYTLVDRVATNQKAELQAGIK 154
Query: 60 ALKQAKSANEKVKLKRSYNDTHAQKKV 86
L+ A L+ + ND + +K+
Sbjct: 155 GLETA--------LRMTANDLYGSEKI 173
>gi|259484645|tpe|CBF81045.1| TPA: ribonuclease H, putative (AFU_orthologue; AFUA_1G07180)
[Aspergillus nidulans FGSC A4]
Length = 463
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNP-LNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ RNG+V A AG GVYFG + NV+ + G R TN AE+ + A
Sbjct: 276 PPGMLRIYTDGSSLRNGRVQAMAGVGVYFGPGDSRRNVSEPLKGSRQTNQRAELTAILRA 335
Query: 61 L 61
L
Sbjct: 336 L 336
>gi|389742903|gb|EIM84089.1| ribonuclease H-like protein [Stereum hirsutum FP-91666 SS1]
Length = 449
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIH 59
+P++ + V+T+G+C +G+ A AG G+++G ++ N + +V TN E+ H
Sbjct: 14 EPNDPITVYTNGSCLNSGQEDARAGSGIWYGPDDERNTSLRVPSEFAQTNQTGELLAVWH 73
Query: 60 ALKQAKSA 67
A+K A +
Sbjct: 74 AVKSAPTT 81
>gi|348532245|ref|XP_003453617.1| PREDICTED: Fanconi anemia group J protein [Oreochromis niloticus]
Length = 1236
Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + V++VGIPFP+I+D V+LK YND H++ +G+ P + +++
Sbjct: 783 KVSEGLDFTDDNARAVVAVGIPFPNIKDLQVELKMKYNDLHSKSRGL-LPGSRWYEIQAY 841
Query: 152 RSYN 155
R+ N
Sbjct: 842 RALN 845
Score = 37.4 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+I+D +V+LK YND H++ +
Sbjct: 802 GIPFPNIKDLQVELKMKYNDLHSKSR 827
>gi|119496353|ref|XP_001264950.1| RNase H domain protein [Neosartorya fischeri NRRL 181]
gi|119413112|gb|EAW23053.1| RNase H domain protein [Neosartorya fischeri NRRL 181]
Length = 412
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIH 59
+ P + ++TDG+ +NG+ A+AG GV+FG + NV+ + G R TN AE+ +
Sbjct: 235 IGPPGMLRIYTDGSALKNGRDTAAAGVGVFFGPGDTRNVSEPLRGNRQTNQRAELTAILR 294
Query: 60 AL 61
AL
Sbjct: 295 AL 296
>gi|310831474|ref|YP_003970117.1| putative ribonuclease H1 [Cafeteria roenbergensis virus BV-PW1]
gi|309386658|gb|ADO67518.1| putative ribonuclease H1 [Cafeteria roenbergensis virus BV-PW1]
Length = 164
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1 MDPDNHVV-VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
M DN FTDG+ N + G+GVYF + LN++ K+ G+VTNN AE+ +
Sbjct: 1 MQKDNKFYYFFTDGSSKGNQFKNPTGGFGVYFPHHPELNISKKLEGKVTNNIAELSAVYY 60
Query: 60 AL 61
+
Sbjct: 61 GI 62
>gi|146309277|ref|YP_001189742.1| ribonuclease H [Pseudomonas mendocina ymp]
gi|145577478|gb|ABP87010.1| Ribonuclease H [Pseudomonas mendocina ymp]
Length = 162
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKV--TGRVTNNNAEIQGAIHALKQ 63
++TDGAC NG+ A AG+G Y E L +A V + TNN AE+ A+ AL++
Sbjct: 5 TIYTDGACTNNGQANARAGWGAYLVNPEGKTLKLAAPVPLEQKQTNNRAELLAAVEALRR 64
Query: 64 A 64
Sbjct: 65 C 65
>gi|134106645|ref|XP_778333.1| hypothetical protein CNBA3330 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50261036|gb|EAL23686.1| hypothetical protein CNBA3330 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 324
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYF---GENNPLNVAGKVTGRV-TNNNAEIQGAIHA 60
+++VV+TDG+ NG+VG+ AG GV++ GE + N A +V G TNN E+ I A
Sbjct: 121 HYLVVYTDGSAKGNGQVGSRAGAGVWWGSRGEASKQNWAERVPGEPQTNNRGELLAVIRA 180
Query: 61 LKQAKSANEKVKLK 74
+++ + ++++
Sbjct: 181 IERCPFPDIPLEIR 194
>gi|67538036|ref|XP_662792.1| hypothetical protein AN5188.2 [Aspergillus nidulans FGSC A4]
gi|40743179|gb|EAA62369.1| hypothetical protein AN5188.2 [Aspergillus nidulans FGSC A4]
Length = 411
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNP-LNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ RNG+V A AG GVYFG + NV+ + G R TN AE+ + A
Sbjct: 224 PPGMLRIYTDGSSLRNGRVQAMAGVGVYFGPGDSRRNVSEPLKGSRQTNQRAELTAILRA 283
Query: 61 L 61
L
Sbjct: 284 L 284
>gi|58258539|ref|XP_566682.1| ribonuclease H [Cryptococcus neoformans var. neoformans JEC21]
gi|57222819|gb|AAW40863.1| ribonuclease H, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 321
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYF---GENNPLNVAGKVTGRV-TNNNAEIQGAIHA 60
+++VV+TDG+ NG+VG+ AG GV++ GE + N A +V G TNN E+ I A
Sbjct: 118 HYLVVYTDGSAKGNGQVGSRAGAGVWWGSRGEASKQNWAERVPGEPQTNNRGELLAVIRA 177
Query: 61 LKQAKSANEKVKLK 74
+++ + ++++
Sbjct: 178 IERCPFPDIPLEIR 191
>gi|341886806|gb|EGT42741.1| hypothetical protein CAEBREN_24856 [Caenorhabditis brenneri]
Length = 932
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 6 HVVVFTDGAC-PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
H VFTDG+ R K+ G GV++G+++P N G V G +NN AE+ A HA+ QA
Sbjct: 36 HAFVFTDGSYRERPQKI---TGIGVFWGDDHPNNYCGLVHGDPSNNRAELCAAHHAIGQA 92
>gi|115388643|ref|XP_001211827.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195911|gb|EAU37611.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 390
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFG-ENNPLNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ +NGK A+AG GVYFG E++ NV+ + G R TN AE+ + A
Sbjct: 214 PPGMLHIYTDGSSLKNGKALAAAGVGVYFGPEDSSRNVSEPLRGSRQTNQRAELTAILRA 273
Query: 61 L 61
L
Sbjct: 274 L 274
>gi|380486426|emb|CCF38711.1| hypothetical protein CH063_09736 [Colletotrichum higginsianum]
Length = 212
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 20/106 (18%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIH 59
DP + +VV+ DGAC NG A +GVYFG + N G + + T++ AEI+
Sbjct: 55 DPGS-LVVYIDGACRDNGARAARGSWGVYFGPGSQYNRCGLLAPDLPQTSSRAEIE---- 109
Query: 60 ALKQAKSANEKVKLKRSYNDTHAQKKVRNVSSVAMRIAQKVDYISH 105
AL QA A ++ +R Y+ H + IA +Y++H
Sbjct: 110 ALAQALDALHEIT-RRDYSLRH------------ITIATDSEYLAH 142
>gi|198429884|ref|XP_002120239.1| PREDICTED: similar to BRIP1 [Ciona intestinalis]
Length = 1145
Score = 45.1 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 27/32 (84%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
VI+VGIPFP+ +D+ V+LK++YN+ H Q +G+
Sbjct: 639 VITVGIPFPNYRDKQVELKKTYNNFHCQDRGL 670
Score = 37.4 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 22/26 (84%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+ +D++V+LK++YN+ H Q +
Sbjct: 643 GIPFPNYRDKQVELKKTYNNFHCQDR 668
>gi|425774710|gb|EKV13011.1| Ribonuclease H, putative [Penicillium digitatum PHI26]
gi|425780703|gb|EKV18704.1| Ribonuclease H, putative [Penicillium digitatum Pd1]
Length = 398
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
++TDG+ RNG ASAG GVYFG + NV+ + G R TN AE+ + A+
Sbjct: 229 IYTDGSSLRNGTPLASAGVGVYFGPGDSRNVSEPLKGSRQTNQRAELTAILRAI 282
>gi|255948658|ref|XP_002565096.1| Pc22g11490 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592113|emb|CAP98437.1| Pc22g11490 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 395
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
++TDG+ RNG ASAG GVYFG + NV+ + G R TN AE+ + A+
Sbjct: 226 IYTDGSSLRNGTPLASAGVGVYFGPGDSRNVSEPLKGSRQTNQRAELTAILRAI 279
>gi|321251952|ref|XP_003192235.1| ribonuclease H [Cryptococcus gattii WM276]
gi|317458703|gb|ADV20448.1| Ribonuclease H, putative [Cryptococcus gattii WM276]
Length = 324
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYF---GENNPLNVAGKVTGRV-TNNNAEIQGAIHAL 61
++VV+TDG+ NG+VG+ AG GV++ GE + N A +V G TNN E+ I A+
Sbjct: 122 YLVVYTDGSARGNGQVGSRAGAGVWWGSQGEASKQNWAERVPGEPQTNNRGELLAVIRAI 181
Query: 62 KQA 64
++
Sbjct: 182 ERC 184
>gi|320040502|gb|EFW22435.1| ribonuclease H [Coccidioides posadasii str. Silveira]
Length = 246
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P N + ++TDG+ NGK + AG GVYFG + NV+ + G R TN AE+ AL
Sbjct: 62 PPNMLKIYTDGSSLGNGKAVSKAGVGVYFGPGDERNVSEPLKGNRQTNQRAELTAISRAL 121
Query: 62 KQA 64
A
Sbjct: 122 DIA 124
>gi|393239034|gb|EJD46568.1| RnaseH-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 386
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 8 VVFTDGACPRNGKVGAS-AGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
V++TDGAC NG A+ AG GV+ ++ V+ + G TNN AE+ I AL+
Sbjct: 86 VLYTDGACSNNGNGAAALAGIGVWSADDKTRRVSERCPGEQTNNRAELIAIIRALE 141
>gi|303321962|ref|XP_003070975.1| RNase H domain containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|240110672|gb|EER28830.1| RNase H domain containing protein [Coccidioides posadasii C735
delta SOWgp]
Length = 420
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P N + ++TDG+ NGK + AG GVYFG + NV+ + G R TN AE+ AL
Sbjct: 236 PPNMLKIYTDGSSLGNGKAVSKAGVGVYFGPGDERNVSEPLKGNRQTNQRAELTAISRAL 295
>gi|392566533|gb|EIW59709.1| RNase H, partial [Trametes versicolor FP-101664 SS1]
Length = 259
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 10 FTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQ 63
FTDG+C NG GA AG GV+FG +P N +V +N AEI A+++
Sbjct: 193 FTDGSCIHNGMAGAVAGSGVWFGTADPRNEGARVPYDAQSNQTAEIYAVTMAVRK 247
>gi|119196199|ref|XP_001248703.1| hypothetical protein CIMG_02474 [Coccidioides immitis RS]
gi|392862084|gb|EJB10457.1| RNase H domain-containing protein [Coccidioides immitis RS]
Length = 420
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P N + ++TDG+ NGK + AG GVYFG + NV+ + G R TN AE+ AL
Sbjct: 236 PPNMLKIYTDGSSLGNGKAVSKAGVGVYFGPGDERNVSEPLKGNRQTNQRAELTAISRAL 295
>gi|367010366|ref|XP_003679684.1| hypothetical protein TDEL_0B03440 [Torulaspora delbrueckii]
gi|359747342|emb|CCE90473.1| hypothetical protein TDEL_0B03440 [Torulaspora delbrueckii]
Length = 392
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHAL 61
V+ DG+ NG ++AGYGVYF +N+ ++ ++ +G TNN AEI+ AL
Sbjct: 234 VYCDGSALSNGTSSSTAGYGVYFDDNSEPKISERLRSGLQTNNRAEIKAVSSAL 287
>gi|409041399|gb|EKM50884.1| hypothetical protein PHACADRAFT_102911, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 262
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNA 52
+ +TDG+C NG A AG GVYFG N+ N +V G + +N A
Sbjct: 193 ITAYTDGSCLHNGTAFARAGSGVYFGPNDARNRGMRVPGPIQSNQA 238
>gi|340054865|emb|CCC49173.1| putative ribonuclease H1 [Trypanosoma vivax Y486]
Length = 300
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 7 VVVFTDGACPRNGKVGAS----AGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHA 60
VVV+ DGAC NG S AGYG ++G+++P N V TN AE+ +H
Sbjct: 122 VVVYIDGACSNNGSQTESNPPLAGYGGFYGDDDPRNFKFPVPANEPQTNQRAELSALVHV 181
Query: 61 LKQA 64
L+ A
Sbjct: 182 LRTA 185
>gi|403216867|emb|CCK71363.1| hypothetical protein KNAG_0G03060 [Kazachstania naganishii CBS
8797]
Length = 374
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHAL 61
D V+ DG+ NG A AGYG YF N++ ++ TG TNN EIQ AL
Sbjct: 211 DKQCAVYCDGSSLANGTTSARAGYGAYFEGEPEKNISERLRTGAQTNNRGEIQAVSSAL 269
>gi|432894997|ref|XP_004076035.1| PREDICTED: Fanconi anemia group J protein homolog [Oryzias latipes]
Length = 1273
Score = 44.3 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + V+++GIPFP+I+D V+LK YND H + +G+ P + +++
Sbjct: 832 KVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHCKSRGL-LPGHRWYEIQAY 890
Query: 152 RSYN 155
R+ N
Sbjct: 891 RALN 894
Score = 37.0 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+I+D +V+LK YND H + +
Sbjct: 851 GIPFPNIKDLQVELKMKYNDQHCKSR 876
>gi|311977680|ref|YP_003986800.1| probable ribonuclease H protein [Acanthamoeba polyphaga mimivirus]
gi|308204742|gb|ADO18543.1| probable ribonuclease H protein [Acanthamoeba polyphaga mimivirus]
gi|339061235|gb|AEJ34539.1| ribonuclease HI [Acanthamoeba polyphaga mimivirus]
gi|351737451|gb|AEQ60486.1| ribonuclease HI [Acanthamoeba castellanii mamavirus]
Length = 306
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALK 62
++ VFTDG+C NG+VGAS G G++F +++ + G TN E+ ++A++
Sbjct: 89 NITVFTDGSCLGNGRVGASGGIGIHFPNGELQDISLEFDKGCCTNQRTELYAILYAIQ 146
>gi|308510320|ref|XP_003117343.1| hypothetical protein CRE_02239 [Caenorhabditis remanei]
gi|308242257|gb|EFO86209.1| hypothetical protein CRE_02239 [Caenorhabditis remanei]
Length = 702
Score = 44.3 bits (103), Expect = 0.026, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
+P+N VV+ G C R A A YGV +GEN+ N G+V G T AE+ AL
Sbjct: 9 EPENCPVVYIAGVCERPRTTKAKATYGVCWGENDSRNTFGRVKGPQTELRAELTSLKMAL 68
Query: 62 KQA 64
+ A
Sbjct: 69 ETA 71
>gi|358368950|dbj|GAA85566.1| ribonuclease H [Aspergillus kawachii IFO 4308]
Length = 412
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNP-LNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ +NGK ASAG GVYFG + NV+ + G R TN AE+ + A
Sbjct: 232 PPGMLRIYTDGSSLKNGKALASAGVGVYFGPGDSRRNVSEPLKGSRQTNQRAELTAILRA 291
Query: 61 L 61
L
Sbjct: 292 L 292
>gi|358382171|gb|EHK19844.1| hypothetical protein TRIVIDRAFT_68171 [Trichoderma virens Gv29-8]
Length = 219
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQ 63
N +++ DGAC NGK GA A GV+ G + N + ++ TN AE+Q I AL Q
Sbjct: 66 NCIIIAVDGACKGNGKPGARASVGVFVGNESEYNKSVLLSESNATNQVAELQAGILALHQ 125
Query: 64 A 64
A
Sbjct: 126 A 126
>gi|320585958|gb|EFW98637.1| ribonuclease [Grosmannia clavigera kw1407]
Length = 974
Score = 44.3 bits (103), Expect = 0.027, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALKQAKSA 67
++TDG+ NGK GA AG GV+FG + N++ ++ G TN AE+ + AL QA
Sbjct: 828 IYTDGSSLGNGKHGALAGIGVFFGHGDKRNISERLKGEPQTNQRAELTAIMRAL-QAVPV 886
Query: 68 NEKVKL 73
++ V++
Sbjct: 887 SQPVRI 892
>gi|345487716|ref|XP_001605873.2| PREDICTED: Fanconi anemia group J protein homolog [Nasonia
vitripennis]
Length = 950
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 53 EIQGAIHALKQAKSANEKVKLKRSYNDTHAQKKVRNVSS----------VAMRIAQKVDY 102
E+Q H +++ +S N+ + R + D + R + ++A+ +D+
Sbjct: 768 ELQQCKHIVQEPRSNNDLEDIMREFRDVIRETADREAACGINGALLFAVFRGKVAEGIDF 827
Query: 103 ISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIP 139
++ V+++GIP+ D VKLKR YND H K +P
Sbjct: 828 SDNEARAVLTIGIPYAVQNDPQVKLKREYNDMHRNKGLLP 867
>gi|330933905|ref|XP_003304343.1| hypothetical protein PTT_16900 [Pyrenophora teres f. teres 0-1]
gi|311319112|gb|EFQ87575.1| hypothetical protein PTT_16900 [Pyrenophora teres f. teres 0-1]
Length = 383
Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHA 60
D N +V +TDG+ +N K +AG GVYFG ++P N + G TN AE+
Sbjct: 13 DASNCLVCYTDGSALKNKKGETAAGCGVYFGPDDPRNYGEPLGPGEQTNQRAELAALWQG 72
Query: 61 L 61
L
Sbjct: 73 L 73
>gi|302672344|ref|XP_003025864.1| hypothetical protein SCHCODRAFT_62826 [Schizophyllum commune
H4-8]
gi|300099535|gb|EFI90961.1| hypothetical protein SCHCODRAFT_62826 [Schizophyllum commune
H4-8]
Length = 168
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
V+ DG+C NG+ A AG GVYFGE+ N++ +V G TNN E I AL
Sbjct: 33 VWIDGSCIGNGREDARAGAGVYFGEHAD-NISARVPGAQTNNRGEHLAFILAL 84
>gi|327294337|ref|XP_003231864.1| ribonuclease HI [Trichophyton rubrum CBS 118892]
gi|326465809|gb|EGD91262.1| ribonuclease HI [Trichophyton rubrum CBS 118892]
Length = 178
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQAK 65
+V+ DGAC NG + A A G+YFG N++ + TN AE+ AI AL+ K
Sbjct: 45 IVIAVDGACSNNGTLYAQASLGIYFGSRYSFNISLALDIDEPTNQKAELMAAIKALQIGK 104
>gi|585901|sp|Q07762.1|RNH1_CRIFA RecName: Full=Ribonuclease H; Short=RNase H
gi|310977|gb|AAA03546.1| ribonuclease H [Crithidia fasciculata]
Length = 494
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNP---LNVAGKVTGRVTNNNAEIQGAIHALKQ 63
VV+ DGAC NG A AGYG ++G + ++ +T TNN E++ IH + Q
Sbjct: 277 VVYVDGACSHNGTPKARAGYGGFYGSTSDSRNFSLPVPITEAQTNNRGEMRAVIHCIVQ 335
>gi|255714767|ref|XP_002553665.1| KLTH0E04202p [Lachancea thermotolerans]
gi|238935047|emb|CAR23228.1| KLTH0E04202p [Lachancea thermotolerans CBS 6340]
Length = 381
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQGAIHALKQ 63
V+ DG+ NG + AGYGVYF ++ N++ + G TNN AEIQ AL Q
Sbjct: 224 VYCDGSALSNGTRSSRAGYGVYFEQDGGNNISEPLLEGAQTNNRAEIQAVSSALDQ 279
>gi|258569833|ref|XP_002543720.1| ribonuclease H [Uncinocarpus reesii 1704]
gi|237903990|gb|EEP78391.1| ribonuclease H [Uncinocarpus reesii 1704]
Length = 418
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
N + ++TDG+ NGK+ A AG GVYFG + NV+ + G R TN AE+ AL
Sbjct: 237 NMLNIYTDGSALGNGKLRAKAGVGVYFGPGDERNVSEPLKGNRQTNQRAELTAISRAL 294
>gi|340517631|gb|EGR47874.1| predicted protein [Trichoderma reesei QM6a]
Length = 498
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHAL 61
VVV DGAC NG A A +GVYFG + LN + + + T+ AEI+ AL
Sbjct: 68 VVVSIDGACRGNGTPSARAAWGVYFGPQSMLNASDALDATLPQTSTRAEIEALSQAL 124
>gi|241956674|ref|XP_002421057.1| ribonuclease H, putative [Candida dubliniensis CD36]
gi|223644400|emb|CAX41214.1| ribonuclease H, putative [Candida dubliniensis CD36]
Length = 233
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-----TGRV-TNNNAEIQGAIHALK 62
++ DGAC NG A AGYGVY+G+ + NV+ + G + TN AE+ HAL+
Sbjct: 57 IYVDGACRHNGSPHAEAGYGVYYGDGDSRNVSVPLDDVDPDGLIPTNQRAELWAMNHALR 116
>gi|255539256|ref|XP_002510693.1| brca1 interacting protein helicase 1 brip1, putative [Ricinus
communis]
gi|223551394|gb|EEF52880.1| brca1 interacting protein helicase 1 brip1, putative [Ricinus
communis]
Length = 1248
Score = 43.5 bits (101), Expect = 0.046, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 59 HALKQAKSANEKVKLKRSYNDTHAQKKVRNVSSVAM-RIAQKVDYISHD---VISVGIPF 114
HA+ + K +++ LK++ T K +V ++++ +D+ + VI VGIPF
Sbjct: 623 HAVGRKKRV-KRLDLKKAVESTENLGKGAAFLAVCRGKVSEGMDFSDDNARVVIVVGIPF 681
Query: 115 PSIQDENVKLKRSYNDTHAQKKGI 138
P+I D V+LK+SYNDT+ K +
Sbjct: 682 PNILDIQVRLKKSYNDTYKTSKNL 705
Score = 40.0 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 79 DTHAQKKVRNVSSVAMRIAQKVDYISHDVISVGIPFPSIQDENVKLKRSYNDTHAQKK-- 136
+THA + + V + ++ A + S + + G F ++ V ++D +A+
Sbjct: 621 NTHAVGRKKRVKRLDLKKAVE----STENLGKGAAFLAVCRGKVSEGMDFSDDNARVVIV 676
Query: 137 -GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+I D +V+LK+SYNDT+ K
Sbjct: 677 VGIPFPNILDIQVRLKKSYNDTYKTSK 703
>gi|408391903|gb|EKJ71269.1| hypothetical protein FPSE_08508 [Fusarium pseudograminearum CS3096]
Length = 447
Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
+ ++TDG+ NGK G SAG GV+FG + N++ ++ G TN AE+ + A++
Sbjct: 296 IRIYTDGSSLGNGKPGCSAGLGVFFGPGDVRNLSERLPGLPQTNQRAELLAILRAME 352
>gi|390602854|gb|EIN12246.1| ribonuclease H-like protein, partial [Punctularia strigosozonata
HHB-11173 SS5]
Length = 130
Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
V+TDG+C G AG GVY+ + +N+A +V GR TNN +G ++A+K A A+
Sbjct: 1 VYTDGSC--KGVTVRRAGAGVYWADGAAMNIAARVPGRQTNN----RGELYAVKLALRAS 54
Query: 69 EKVKLKRSYNDTH 81
++ Y+D+
Sbjct: 55 NPLRNLDIYSDSE 67
>gi|392567797|gb|EIW60972.1| hypothetical protein TRAVEDRAFT_119499, partial [Trametes
versicolor FP-101664 SS1]
Length = 313
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
V TDGAC RNG+ ASAG GV+F + + N A ++ + +N + A+ AL+ K A+
Sbjct: 250 VATDGACERNGERNASAGAGVFFAQGDNRNRAFRIPKNIEQSN-QTGEAVAALQAGKMAD 308
>gi|50543514|ref|XP_499923.1| YALI0A09878p [Yarrowia lipolytica]
gi|49645788|emb|CAG83850.1| YALI0A09878p [Yarrowia lipolytica CLIB122]
Length = 276
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALK 62
D+ + V+TDGA N A AGYG++FG + NV+ + G + TN AE+ A K
Sbjct: 126 DHPIPVYTDGASRNNQSSNAKAGYGIFFGNGSEDNVSKPLAGMQQTNQRAELTAIYEACK 185
Query: 63 QAKSANEK 70
K N++
Sbjct: 186 IIKDRNDR 193
>gi|221113571|ref|XP_002164284.1| PREDICTED: ribonuclease H1-like [Hydra magnipapillata]
Length = 255
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQAKS 66
VV++DG C NG A G GVY+G +P NV+ + + TN AE+ A AL+ A
Sbjct: 110 VVYSDGCCLSNGSNFAVGGVGVYWGPYHPKNVSEYLDVEQPTNQKAELVAACRALETAIE 169
Query: 67 AN 68
N
Sbjct: 170 MN 171
>gi|406860289|gb|EKD13348.1| ribonuclease h [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 251
Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR--VTNNNAEIQGAIHALKQA 64
+V+ DGAC NG+ A A YGV+ GE + N + V TN AEI AI ALK+
Sbjct: 73 IVIAVDGACRNNGQPDARAAYGVFHGEGSDENFSRIVPSNHPPTNQVAEIFAAIAALKKL 132
Query: 65 KSA 67
+ A
Sbjct: 133 QLA 135
>gi|380485229|emb|CCF39493.1| RNase H domain-containing protein [Colletotrichum higginsianum]
Length = 329
Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFG---ENNPLNVAGKVTGRV--------TNNNAEI 54
++++TDGAC NG A G G FG E P VA K+ R T+N AE+
Sbjct: 153 EMLIYTDGACLENGAADARGGCGFVFGPRLETAPGRVAFKLEDRGPDGQVYRHTSNRAEL 212
Query: 55 QGAIHALKQAKSANEKVK 72
+ A+ AL+ + E K
Sbjct: 213 RAAVGALRFRRWYGESFK 230
>gi|46109122|ref|XP_381619.1| hypothetical protein FG01443.1 [Gibberella zeae PH-1]
Length = 339
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
+ ++TDG+ NGK G SAG GV+FG + N++ ++ G TN AE+ + A++
Sbjct: 263 IRIYTDGSSLGNGKPGCSAGLGVFFGTGDMRNLSERLPGLPQTNQRAELLAILRAME 319
>gi|452004922|gb|EMD97378.1| hypothetical protein COCHEDRAFT_1164219 [Cochliobolus
heterostrophus C5]
Length = 110
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTN 49
++FTDGAC NG+ GA AG GV +G ++ ++ +T +V N
Sbjct: 66 IIFTDGACTDNGRPGAKAGVGVAYGNDDSSQLSKPITDKVDN 107
>gi|123486053|ref|XP_001324631.1| helicase [Trichomonas vaginalis G3]
gi|121907517|gb|EAY12408.1| helicase, putative [Trichomonas vaginalis G3]
Length = 880
Score = 42.7 bits (99), Expect = 0.068, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPS 142
R+++ D+ VI GIP+PS+ + LKR+YND HA++K + F +
Sbjct: 579 RVSEGTDFADRQARCVIIFGIPYPSLYAPEIILKRNYNDDHAKQKNVEFAT 629
Score = 37.0 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIP+PS+ ++ LKR+YND HA++K
Sbjct: 598 GIPYPSLYAPEIILKRNYNDDHAKQK 623
>gi|408389469|gb|EKJ68917.1| hypothetical protein FPSE_10894 [Fusarium pseudograminearum CS3096]
Length = 680
Score = 42.7 bits (99), Expect = 0.068, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 12/68 (17%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV------------TNNNAEI 54
++++TDG+C NG+ A G+ V FG ++P + V+GR+ T+N AE+
Sbjct: 310 LLLYTDGSCLNNGQSDARGGWSVSFGTDDPHLGSSAVSGRLEEMGPFGDREKATSNRAEL 369
Query: 55 QGAIHALK 62
+ I AL+
Sbjct: 370 RAVIAALR 377
>gi|260947408|ref|XP_002618001.1| hypothetical protein CLUG_01460 [Clavispora lusitaniae ATCC 42720]
gi|238847873|gb|EEQ37337.1| hypothetical protein CLUG_01460 [Clavispora lusitaniae ATCC 42720]
Length = 303
Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENNPLNVAGKV-----TGRV--TNNNAEIQGAIHA 60
V+ DGA NGK G +AGYGVYFG N+ NV+ + R+ TN AE+ +HA
Sbjct: 141 VYVDGAARGNGKSGIPNAGYGVYFGPNDKRNVSQGLHEVDDVDRIKPTNQRAELHALVHA 200
Query: 61 L 61
L
Sbjct: 201 L 201
>gi|317034479|ref|XP_001396454.2| hypothetical protein ANI_1_776114 [Aspergillus niger CBS 513.88]
Length = 271
Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHAL 61
+V+ DGAC NG+ GA A GVY G ++PLN + + + T+ AE+ AL
Sbjct: 108 IVIAIDGACRNNGRYGARASTGVYHGHDHPLNGSASLPPNLKQTSQVAELAACERAL 164
>gi|50547429|ref|XP_501184.1| YALI0B21494p [Yarrowia lipolytica]
gi|49647050|emb|CAG83437.1| YALI0B21494p [Yarrowia lipolytica CLIB122]
Length = 483
Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
++ + V TDGAC G AG GV+F + + N +G V G+ T AE+ AL+
Sbjct: 306 ESTMTVHTDGACQ-----GEKAGAGVWFQDGSEFNFSGPVEGKQTRERAELYAVFQALR 359
>gi|392564393|gb|EIW57571.1| hypothetical protein TRAVEDRAFT_126501, partial [Trametes
versicolor FP-101664 SS1]
Length = 259
Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV 43
+ V VFTDG+C NG+ A AG GV+FG ++P N + V
Sbjct: 187 NEEVEVFTDGSCVNNGRDDARAGSGVWFGVDDPRNCSSGV 226
>gi|345562356|gb|EGX45424.1| hypothetical protein AOL_s00169g30 [Arthrobotrys oligospora ATCC
24927]
Length = 396
Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQA 64
++TDG+ NG A AG G++FG + NV+ + R TNN AE+ + A++ A
Sbjct: 246 IYTDGSSLMNGSASARAGVGIWFGPGDKRNVSEPLNDSRATNNRAELSAILRAIEIA 302
>gi|170106277|ref|XP_001884350.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640696|gb|EDR04960.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 182
Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV------TGRVTNNNAEIQGAIHAL 61
+VF DGAC NG+ A AG G+ G++ + V G T+ AE+ AI L
Sbjct: 62 LVFIDGACSNNGRDDAKAGLGITIGDDEECCWSIAVKDAVDPVGPRTSQRAELLAAIEGL 121
Query: 62 KQAKSAN 68
KQ +++N
Sbjct: 122 KQLETSN 128
>gi|19074028|ref|NP_584634.1| ATP-DEPENDENT DNA-BINDING HELICASE (RAD3/XPD subfamily)
[Encephalitozoon cuniculi GB-M1]
gi|19068670|emb|CAD25138.1| ATP-DEPENDENT DNA-BINDING HELICASE (RAD3/XPD subfamily)
[Encephalitozoon cuniculi GB-M1]
gi|449329243|gb|AGE95516.1| ATP-dependent DNA-binding helicase [Encephalitozoon cuniculi]
Length = 678
Score = 42.4 bits (98), Expect = 0.082, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 12/83 (14%)
Query: 63 QAKSANEKVKLKRSYNDTHAQKKVRNVSSVAM-----RIAQKVDY---ISHDVISVGIPF 114
++ + NE K+ R Y + A K+ S+V M + ++ +D+ + VI+VGIP+
Sbjct: 526 KSGAGNEFEKVMRRYKNRIATKQ----SAVFMCVYRGKASEGIDFKDSFARAVIAVGIPY 581
Query: 115 PSIQDENVKLKRSYNDTHAQKKG 137
PS+ D V+LK+ +ND + G
Sbjct: 582 PSLHDPQVELKKEFNDKYKSFNG 604
>gi|341888732|gb|EGT44667.1| hypothetical protein CAEBREN_09598 [Caenorhabditis brenneri]
Length = 1029
Score = 42.4 bits (98), Expect = 0.087, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 6 HVVVFTDGAC-PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
H VFTDG+ R K+ G GV++G+++P N G V G +NN AE+ A HA+ QA
Sbjct: 36 HAFVFTDGSYRERPQKI---TGIGVFWGDDHPNNYCGLVHGDPSNNRAELCAAHHAIGQA 92
>gi|315056341|ref|XP_003177545.1| hypothetical protein MGYG_08940 [Arthroderma gypseum CBS 118893]
gi|311339391|gb|EFQ98593.1| hypothetical protein MGYG_08940 [Arthroderma gypseum CBS 118893]
Length = 220
Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQAK 65
+++ DGAC NG + A GVY G+ + N + ++ + TN AE+ I+ L A+
Sbjct: 67 IIIAVDGACSENGMETSRAAIGVYVGKKSDYNASMRLDSSWATNQKAELAAGIYGLDAAR 126
Query: 66 SANE 69
N+
Sbjct: 127 EIND 130
>gi|350639095|gb|EHA27450.1| hypothetical protein ASPNIDRAFT_126620 [Aspergillus niger ATCC
1015]
Length = 209
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHAL 61
+V+ DGAC NG+ GA A GVY G ++PLN + ++ + T+ AE+ AL
Sbjct: 49 IVIAIDGACRNNGRYGARASTGVYHGHDHPLNGSASLSPNLKQTSQVAELAACERAL 105
>gi|87119405|ref|ZP_01075303.1| ribonuclease HI, partial [Marinomonas sp. MED121]
gi|86165796|gb|EAQ67063.1| ribonuclease HI, partial [Marinomonas sp. MED121]
Length = 158
Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HV+++TDGAC N G + + FGE+ G+ TNN E+ GAI L K
Sbjct: 16 HVIIYTDGACKGNPGPGGWGAW-ITFGEHEKRLCGGE--NDTTNNRMELSGAIEGL---K 69
Query: 66 SANEKVKLKRSYNDTHAQKKV 86
+ E K+ + ++ QK +
Sbjct: 70 ALTEPCKVTLYTDSSYVQKGI 90
>gi|443682315|gb|ELT86966.1| hypothetical protein CAPTEDRAFT_219962 [Capitella teleta]
Length = 1021
Score = 42.4 bits (98), Expect = 0.092, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 33/47 (70%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ + VI++GIPFP+ +D V+LK+ YN+ QK+G+
Sbjct: 569 KVSEGMDFSDRNARAVIAIGIPFPNYKDAQVELKQKYNNMFGQKRGL 615
>gi|449300208|gb|EMC96220.1| hypothetical protein BAUCODRAFT_33570 [Baudoinia compniacensis UAMH
10762]
Length = 441
Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
V ++TDG+ NG+ A G GVYFG + N++ +TG R TN AE+ AL
Sbjct: 255 VRIYTDGSSLSNGQASAIGGVGVYFGPQDKRNISEGLTGSRQTNQRAELTAIQRAL 310
>gi|328714715|ref|XP_003245432.1| PREDICTED: Fanconi anemia group J protein homolog isoform 2
[Acyrthosiphon pisum]
Length = 912
Score = 42.4 bits (98), Expect = 0.096, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
+I++ +D+ ++ V++VGIPFP+ +D V K+ YND H + KG+ P + +++
Sbjct: 780 KISEGLDFSDNNARAVVAVGIPFPNYKDAAVTHKKDYNDKHHKNKGL-LPGWEWYQIQAY 838
Query: 152 RSYN 155
R+ N
Sbjct: 839 RALN 842
>gi|134081206|emb|CAK41715.1| unnamed protein product [Aspergillus niger]
Length = 278
Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHAL 61
+V+ DGAC NG+ GA A GVY G ++PLN + + + T+ AE+ AL
Sbjct: 131 IVIAIDGACRNNGRYGARASTGVYHGHDHPLNGSASLPPNLKQTSQVAELAACERAL 187
>gi|170100332|ref|XP_001881384.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644063|gb|EDR08314.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 207
Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGEN----NPLNVAGKVTGRVTNNNAEIQGAIH 59
D+ +++FTDGA P NG+ G AG GV G + + + V+ ++T+N AE++
Sbjct: 35 DDRILIFTDGAAPNNGRPGVRAGCGVVTGPSLDSRHLFRLEPDVSHQLTSNRAELRAVEA 94
Query: 60 ALK 62
A++
Sbjct: 95 AIE 97
>gi|427715958|ref|YP_007063952.1| ribonuclease H [Calothrix sp. PCC 7507]
gi|427348394|gb|AFY31118.1| Ribonuclease H [Calothrix sp. PCC 7507]
Length = 303
Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 9 VFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK--QA 64
++TDGAC N G G+G VYF +++ ++ G TNN EIQ AI AL+ QA
Sbjct: 10 IYTDGACTGNPGPG---GWGTVVYFSDDS-IHEMGDAASHTTNNKMEIQAAIAALQYLQA 65
Query: 65 KSANEKVKLKRSYNDTH 81
E + L Y D+
Sbjct: 66 SGQTEPITL---YTDSE 79
>gi|330932415|ref|XP_003303765.1| hypothetical protein PTT_16115 [Pyrenophora teres f. teres 0-1]
gi|311320008|gb|EFQ88137.1| hypothetical protein PTT_16115 [Pyrenophora teres f. teres 0-1]
Length = 545
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 11/77 (14%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNP----LNVA-GKVTGRVTNNNAEIQG 56
D +VV TDGA NG++GA AG GVYFG +P L+ A ++ R+ N +E
Sbjct: 229 DSRGTIVVSTDGASRGNGQLGARAGVGVYFGPADPRFVHLSTAQTNISDRINRNVSE--- 285
Query: 57 AIHALKQAKSANEKVKL 73
L+ +K N++ +L
Sbjct: 286 ---PLRGSKQTNQRAEL 299
>gi|328714717|ref|XP_001943091.2| PREDICTED: Fanconi anemia group J protein homolog isoform 1
[Acyrthosiphon pisum]
Length = 918
Score = 42.4 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
+I++ +D+ ++ V++VGIPFP+ +D V K+ YND H + KG+ P + +++
Sbjct: 786 KISEGLDFSDNNARAVVAVGIPFPNYKDAAVTHKKDYNDKHHKNKGL-LPGWEWYQIQAY 844
Query: 152 RSYN 155
R+ N
Sbjct: 845 RALN 848
>gi|320165278|gb|EFW42177.1| DNA repair helicase [Capsaspora owczarzaki ATCC 30864]
Length = 1329
Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 33/47 (70%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ + V++VGIPFP++ + + +KRSYND HA ++ +
Sbjct: 1020 KVSEGIDFADNQARAVLAVGIPFPNLGTDQIVIKRSYNDLHASERDL 1066
Score = 37.4 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP++ +++ +KRSYND HA ++
Sbjct: 1039 GIPFPNLGTDQIVIKRSYNDLHASER 1064
>gi|449303343|gb|EMC99351.1| hypothetical protein BAUCODRAFT_45711, partial [Baudoinia
compniacensis UAMH 10762]
Length = 165
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENN-PLNVAGKV-TGRVTNNNAEIQGAIHALKQA 64
V++ DGAC NG+ A +G G++F E+N N K+ T T+ AE+ ++AL+ A
Sbjct: 2 VIIAVDGACRNNGRPNAESGVGIFFHEDNYQWNEVVKLETDNHTSQRAELYAGLYALRAA 61
Query: 65 KS 66
+S
Sbjct: 62 RS 63
>gi|170581679|ref|XP_001895788.1| RNase H family protein [Brugia malayi]
gi|158597153|gb|EDP35372.1| RNase H family protein [Brugia malayi]
Length = 262
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNN-AEIQGAIHALKQAK 65
VV++TDG+C + ++G G+YFG N+PLN + + G N AEI A ALK +
Sbjct: 65 VVIYTDGSCIDH----YASGIGIYFGPNHPLNKSKAIHGHEHNXGLAEIIAAKTALKSLR 120
Query: 66 SAN 68
N
Sbjct: 121 KWN 123
>gi|325184773|emb|CCA19264.1| ribonuclease putative [Albugo laibachii Nc14]
Length = 258
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-----GRV---TNNNAEIQGAIH 59
VF DG+ NGK+G AGY F ++ +AG + G+V TNN AE A+
Sbjct: 95 TVFCDGSALNNGKLGCKAGYACIFPDHPDWKIAGALEEKDKDGKVIPPTNNRAEYVAALK 154
Query: 60 ALKQ 63
AL++
Sbjct: 155 ALQR 158
>gi|365763940|gb|EHN05466.1| Rnh1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 348
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQGAIHALKQ--AK 65
V+ DG+ NG + AGYGVYF N++ ++G TNN AEI+ ALK+ K
Sbjct: 190 VYCDGSSFGNGTSSSRAGYGVYFEGAPEENISEPLLSGAQTNNRAEIEAVSEALKKIWEK 249
Query: 66 SANEKVKL 73
NEK K+
Sbjct: 250 LTNEKEKV 257
>gi|440302531|gb|ELP94838.1| HELICc2 domain containing protein, partial [Entamoeba invadens IP1]
Length = 484
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 54/94 (57%), Gaps = 9/94 (9%)
Query: 53 EIQGAIHALKQAKSANEKVKLKRSY-NDTHAQKKVRNVSSVAM-----RIAQKVDY---I 103
E + ++ L++ K+ + K ++ + D KK N +V + ++++ +D+ +
Sbjct: 42 ECRKTLNELRKHKTVFIEQKRRKDFLRDFEEYKKCANQGAVFLGVFRGKLSEGIDFGDNL 101
Query: 104 SHDVISVGIPFPSIQDENVKLKRSYNDTHAQKKG 137
+ VI VGIP+P++ D NVK+K+ YN+ Q++G
Sbjct: 102 ARVVIIVGIPYPNLGDLNVKMKKQYNNAVVQQEG 135
>gi|302510739|ref|XP_003017321.1| hypothetical protein ARB_04201 [Arthroderma benhamiae CBS 112371]
gi|291180892|gb|EFE36676.1| hypothetical protein ARB_04201 [Arthroderma benhamiae CBS 112371]
Length = 427
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFG-ENNPLNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ RNG A AG GVYFG ++ NV+ + G R TN AE+ A
Sbjct: 252 PPGMLKIYTDGSALRNGTSQARAGVGVYFGPDDESRNVSEPLAGSRQTNQRAELTAISRA 311
Query: 61 L 61
L
Sbjct: 312 L 312
>gi|343428928|emb|CBQ72473.1| related to Ribonuclease H [Sporisorium reilianum SRZ2]
Length = 203
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
N V VFTDGAC NGK A AG+ ++F E L+ + +V G R +N AE+ I A
Sbjct: 18 NVVFVFTDGACIDNGKPSARAGWAIHFPDPELRHLSDSDRVFGRRQSNQRAELFALIRAA 77
Query: 62 KQAKSANEKV 71
++ +V
Sbjct: 78 YVTRAETRQV 87
>gi|448825592|ref|YP_007418523.1| putative ribonuclease H protein [Megavirus lba]
gi|444236777|gb|AGD92547.1| putative ribonuclease H protein [Megavirus lba]
Length = 175
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIH 59
+D +N V+VFTDG+C NG+ A G G++F + +++ T G TN E+ ++
Sbjct: 8 IDIEN-VIVFTDGSCVNNGRKHAVGGIGIHFPDRTLNDISRIFTKGCCTNQRTELYAILY 66
Query: 60 ALKQAKS 66
A+K S
Sbjct: 67 AIKYVHS 73
>gi|407925890|gb|EKG18864.1| hypothetical protein MPH_03880 [Macrophomina phaseolina MS6]
Length = 239
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALK 62
N ++V DGAC RNG A A GV+F +P N A + TN AE+ AI AL+
Sbjct: 49 NSIIVSADGACRRNGHSRAQASIGVFFKVGSPYNEAHVLPEATPTNQRAELFAAITALR 107
>gi|241998210|ref|XP_002433748.1| conserved hypothetical protein [Ixodes scapularis]
gi|215495507|gb|EEC05148.1| conserved hypothetical protein [Ixodes scapularis]
Length = 280
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 95 RIAQKVDY---ISHDVISVGIPFPSIQDENVKLKRSYND 130
RI++ +D+ ++ VIS+GIPFPS Q E+V K +ND
Sbjct: 184 RISEGIDFSDNLARAVISIGIPFPSTQQEDVHFKMKFND 222
>gi|255725980|ref|XP_002547916.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133840|gb|EER33395.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 284
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 8 VVFTDGACPRNG-KVGASAGYGVYFGENNPLNVAGKV-------TGRVTNNNAEIQGAIH 59
VV+ DGAC NG K SAGYGVY+G N+ N A + R TN AE+ H
Sbjct: 114 VVYIDGACRGNGNKYNTSAGYGVYYGHNDSRNAAVSLDFVDQDNNYRPTNQRAELHALNH 173
Query: 60 AL 61
L
Sbjct: 174 VL 175
>gi|425701527|gb|AFX92689.1| putative ribonuclease H protein [Megavirus courdo11]
Length = 175
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIH 59
+D +N V+VFTDG+C NG+ A G G++F + +++ T G TN E+ ++
Sbjct: 8 IDIEN-VIVFTDGSCVNNGRKHAVGGIGIHFPDRTLNDISRIFTKGCCTNQRTELYAILY 66
Query: 60 ALKQAKS 66
A+K S
Sbjct: 67 AIKYVHS 73
>gi|315056339|ref|XP_003177544.1| hypothetical protein MGYG_08939 [Arthroderma gypseum CBS 118893]
gi|311339390|gb|EFQ98592.1| hypothetical protein MGYG_08939 [Arthroderma gypseum CBS 118893]
Length = 198
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY------FGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
VV+ DGAC NG+ + A GV+ F E+ PLN+ R TN AEI IH
Sbjct: 26 VVISVDGACRGNGREHSDAAAGVFVDHGSRFNESIPLNL-----DRPTNQKAEILAGIHG 80
Query: 61 LKQAK 65
L +A+
Sbjct: 81 LSKAR 85
>gi|358060818|dbj|GAA93589.1| hypothetical protein E5Q_00233 [Mixia osmundae IAM 14324]
Length = 533
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQ 63
VV+TDG+C NG+ A AGYGV++ + + ++ + G TN AE+ + A+ Q
Sbjct: 163 VVYTDGSCLSNGQARARAGYGVHWPDKDYPDLFEALEGEAQTNQRAELTAILSAVLQ 219
>gi|323650991|ref|YP_004243634.1| ribonuclease H [Bacillus subtilis subsp. natto]
gi|323461631|dbj|BAJ77047.1| ribonuclease H [Bacillus subtilis subsp. natto]
Length = 155
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV++ DGA NGK G+G N + VTNN EI+ AI ALKQ K+
Sbjct: 4 VVIYCDGAARNNGKDNNIGGFGAVLRYGNHVKTIKAGFRNVTNNMMEIRAAIEALKQLKT 63
Query: 67 ANEKVKL 73
N V++
Sbjct: 64 TNIPVEI 70
>gi|68473368|ref|XP_719242.1| hypothetical protein CaO19.13009 [Candida albicans SC5314]
gi|68473601|ref|XP_719125.1| hypothetical protein CaO19.5563 [Candida albicans SC5314]
gi|46440929|gb|EAL00230.1| hypothetical protein CaO19.5563 [Candida albicans SC5314]
gi|46441052|gb|EAL00352.1| hypothetical protein CaO19.13009 [Candida albicans SC5314]
Length = 233
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-----TGRV-TNNNAEIQGAIHALK 62
++ DGAC NG A AGYGVY+G+ + NV+ + G + TN AE+ HAL+
Sbjct: 57 IYVDGACRYNGCPHAEAGYGVYYGDGDSRNVSVPLDDVDPDGIIPTNQRAELWAMNHALR 116
>gi|17507137|ref|NP_493618.1| Protein DOG-1 [Caenorhabditis elegans]
gi|3876642|emb|CAB04262.1| Protein DOG-1 [Caenorhabditis elegans]
Length = 983
Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 33/47 (70%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYI---SHDVISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ + VISVGIP+P+ D+ V K+ YND ++++KGI
Sbjct: 841 KVSEGIDFADDRARVVISVGIPYPNAMDDQVNAKKLYNDQNSKEKGI 887
>gi|341901524|gb|EGT57459.1| CBN-DOG-1 protein [Caenorhabditis brenneri]
Length = 987
Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 33/47 (70%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYI---SHDVISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ + VISVGIP+P+ D+ V K+SYND ++++ GI
Sbjct: 845 KVSEGIDFADDRARVVISVGIPYPNAMDDQVNAKKSYNDMNSKEMGI 891
>gi|169607779|ref|XP_001797309.1| hypothetical protein SNOG_06952 [Phaeosphaeria nodorum SN15]
gi|160701489|gb|EAT85603.2| hypothetical protein SNOG_06952 [Phaeosphaeria nodorum SN15]
Length = 1154
Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAI 58
+DP + +VV DGAC NG A A YGVYFG + N G + + T+ AEI+
Sbjct: 633 VDPAS-LVVHIDGACRGNGTSSAKASYGVYFGPESSHNTKGILPQSLPQTSTRAEIE--- 688
Query: 59 HALKQA 64
AL+QA
Sbjct: 689 -ALRQA 693
>gi|326475291|gb|EGD99300.1| hypothetical protein TESG_06569 [Trichophyton tonsurans CBS 112818]
Length = 220
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQAK 65
+++ DGAC NG A GVY G + N + ++ + TN AE+ I+ L A+
Sbjct: 67 IIIAVDGACSENGAAAPRAAIGVYVGNKSDYNASMQLDSSWATNQKAELAAGIYGLDAAR 126
Query: 66 SANE 69
N+
Sbjct: 127 EIND 130
>gi|50290915|ref|XP_447890.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527201|emb|CAG60839.1| unnamed protein product [Candida glabrata]
Length = 403
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQGAIHAL 61
P V + DG+ NG + AGYGVYF N N++ + G TNN AEI AL
Sbjct: 238 PVQKVTTYCDGSSLGNGTHASKAGYGVYFPHNPSYNISKPLLIGPQTNNRAEIMAVSEAL 297
>gi|302503386|ref|XP_003013653.1| hypothetical protein ARB_00100 [Arthroderma benhamiae CBS 112371]
gi|291177218|gb|EFE33013.1| hypothetical protein ARB_00100 [Arthroderma benhamiae CBS 112371]
Length = 194
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQAK 65
+++ DGAC NG A GVY G + N + ++ + TN AE+ I+ L A+
Sbjct: 41 IIIAVDGACRENGAAAPRAAIGVYVGNKSDYNASMQLDSSWATNQKAELAAGIYGLDAAR 100
Query: 66 SANE 69
N+
Sbjct: 101 EIND 104
>gi|326480361|gb|EGE04371.1| hypothetical protein TEQG_08666 [Trichophyton equinum CBS 127.97]
Length = 220
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQAK 65
+++ DGAC NG A GVY G + N + ++ + TN AE+ I+ L A+
Sbjct: 67 IIIAVDGACSENGAAAPRAAIGVYVGNKSDYNASMQLDSSWATNQKAELAAGIYGLDAAR 126
Query: 66 SANE 69
N+
Sbjct: 127 EIND 130
>gi|363539939|ref|YP_004894660.1| mg609 gene product [Megavirus chiliensis]
gi|350611104|gb|AEQ32548.1| putative ribonuclease H protein [Megavirus chiliensis]
Length = 240
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIH 59
+D +N V+VFTDG+C NG+ A G G++F + +++ T G TN E+ ++
Sbjct: 8 IDIEN-VIVFTDGSCVNNGRKHAVGGIGIHFPDRTLNDISRIFTKGCCTNQRTELYAILY 66
Query: 60 ALKQAKS 66
A+K S
Sbjct: 67 AIKYVHS 73
>gi|371943967|gb|AEX61795.1| putative ribonuclease H protein [Megavirus courdo7]
Length = 240
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIH 59
+D +N V+VFTDG+C NG+ A G G++F + +++ T G TN E+ ++
Sbjct: 8 IDIEN-VIVFTDGSCVNNGRKHAVGGIGIHFPDRTLNDISRIFTKGCCTNQRTELYAILY 66
Query: 60 ALKQAKS 66
A+K S
Sbjct: 67 AIKYVHS 73
>gi|327295675|ref|XP_003232532.1| RNase H domain-containing protein [Trichophyton rubrum CBS 118892]
gi|326464843|gb|EGD90296.1| RNase H domain-containing protein [Trichophyton rubrum CBS 118892]
Length = 381
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFG-ENNPLNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ RNG A AG GVYFG ++ NV+ + G R TN AE+ A
Sbjct: 206 PPGMLKIYTDGSALRNGTSQARAGVGVYFGPDDESRNVSEPLAGSRQTNQRAELTAISRA 265
Query: 61 L 61
L
Sbjct: 266 L 266
>gi|151945939|gb|EDN64171.1| ribonuclease H [Saccharomyces cerevisiae YJM789]
gi|323303448|gb|EGA57243.1| Rnh1p [Saccharomyces cerevisiae FostersB]
gi|349580525|dbj|GAA25685.1| K7_Rnh1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 348
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQGAIHALK 62
D + V+ DG+ NG + AGYG YF N++ ++G TNN AEI+ ALK
Sbjct: 185 DKSMNVYCDGSSFGNGTSSSRAGYGAYFEGAPEENISEPLLSGAQTNNRAEIEAVSEALK 244
Query: 63 Q--AKSANEKVKL 73
+ K NEK K+
Sbjct: 245 KIWEKLTNEKEKV 257
>gi|326472277|gb|EGD96286.1| RNase H domain-containing protein [Trichophyton tonsurans CBS
112818]
gi|326483333|gb|EGE07343.1| hypothetical protein TEQG_08753 [Trichophyton equinum CBS 127.97]
Length = 381
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFG-ENNPLNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ RNG A AG GVYFG ++ NV+ + G R TN AE+ A
Sbjct: 206 PPGMLKIYTDGSALRNGTSQARAGVGVYFGPDDESRNVSEPLAGSRQTNQRAELTAISRA 265
Query: 61 L 61
L
Sbjct: 266 L 266
>gi|392569164|gb|EIW62338.1| RNase H, partial [Trametes versicolor FP-101664 SS1]
Length = 259
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHA 60
+ V VFTDG+C NG A AG G +FG + NV +V + +N AEI I A
Sbjct: 187 EEEVEVFTDGSCIGNGSAMALAGSGAWFGPGDLRNVGARVPYDIQSNQTAEIYAVILA 244
>gi|427725277|ref|YP_007072554.1| ribonuclease H [Leptolyngbya sp. PCC 7376]
gi|427356997|gb|AFY39720.1| Ribonuclease H [Leptolyngbya sp. PCC 7376]
Length = 293
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFG-ENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
++TDG C N S G+GV +N ++ G + TNN E+Q AI ALKQ + +
Sbjct: 5 IYTDGGCINNP---GSGGWGVVIQYQNGSVSELGDHEAQTTNNRMEMQAAIEALKQFRDS 61
Query: 68 NEK 70
+++
Sbjct: 62 DQR 64
>gi|170096448|ref|XP_001879444.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645812|gb|EDR10059.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 236
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENN------PLNVAGKVTGRVTNNNAEIQGAIHAL 61
+VF DGAC NG+ A AG G+ G++ +N A G TN AE+ AI L
Sbjct: 62 IVFIDGACSNNGREDAKAGLGITIGDDESYCWSIAVNDAADPNGPRTNQRAELLAAIEGL 121
Query: 62 KQAKSAN 68
+ + N
Sbjct: 122 QLLANVN 128
>gi|68473460|ref|XP_719288.1| hypothetical protein CaO19.13057 [Candida albicans SC5314]
gi|46441100|gb|EAL00400.1| hypothetical protein CaO19.13057 [Candida albicans SC5314]
Length = 285
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENNPLNVA-------GKVTGRVTNNNAEIQGAIHA 60
V+ DGA NG+ A +GYGVY+G N+ NVA + + TN AE+ G HA
Sbjct: 117 VYVDGASRGNGQTSKAPSGYGVYYGPNDSRNVAVPLDRVDKNTSYKPTNQRAELHGVKHA 176
Query: 61 LK 62
LK
Sbjct: 177 LK 178
>gi|449672585|ref|XP_004207744.1| PREDICTED: Fanconi anemia group J protein homolog, partial [Hydra
magnipapillata]
Length = 372
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQK 135
V++VGIPFP+++D +V LKR YND + K
Sbjct: 300 VVAVGIPFPNVKDLSVTLKRKYNDLYFSK 328
>gi|327294335|ref|XP_003231863.1| hypothetical protein TERG_07483 [Trichophyton rubrum CBS 118892]
gi|326465808|gb|EGD91261.1| hypothetical protein TERG_07483 [Trichophyton rubrum CBS 118892]
Length = 220
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQAK 65
+++ DGAC NG A GVY G + N + ++ + TN AE+ I+ L A+
Sbjct: 67 IIIAVDGACRENGATAPRAAIGVYVGNKSDYNASMQLDSSWATNQKAELAAGIYGLDAAR 126
Query: 66 SANE 69
N+
Sbjct: 127 EIND 130
>gi|452986031|gb|EME85787.1| hypothetical protein MYCFIDRAFT_118885, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 351
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALK 62
D+ + ++TDG+ NG A G GVYFG + N++ + G + TN AE+ + AL+
Sbjct: 194 DSAIRIYTDGSSLANGSKNAWGGVGVYFGPADQRNISEPLQGTKQTNQRAELTAIVRALE 253
Query: 63 QA 64
A
Sbjct: 254 VA 255
>gi|326433574|gb|EGD79144.1| hypothetical protein PTSG_09876 [Salpingoeca sp. ATCC 50818]
Length = 879
Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 25/29 (86%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQK 135
V++VGIPFP+I+D V +K++YND ++Q+
Sbjct: 643 VVTVGIPFPNIKDLKVNMKKAYNDANSQR 671
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQK 161
GIPFP+I+D KV +K++YND ++Q+
Sbjct: 647 GIPFPNIKDLKVNMKKAYNDANSQR 671
>gi|341899021|gb|EGT54956.1| hypothetical protein CAEBREN_14689 [Caenorhabditis brenneri]
Length = 175
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPL--NVAGKVTGRVTNNNAEIQGAIHALKQA 64
++TDG RNG+ GA G+ + F +NN + T TNN E+ I AL+ A
Sbjct: 15 IYTDGCALRNGQPGAKGGWAIVFEDNNEFENDSDWCTTCPQTNNCFELMAVIEALRNA 72
>gi|148705007|gb|EDL36954.1| ribonuclease H1, isoform CRA_b [Mus musculus]
Length = 199
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQ--GAIH 59
V+V+TDG C NG+ A AG GVY+G +P + G + +E Q G++H
Sbjct: 140 VIVYTDGCCSSNGRKRARAGIGVYWGPGHPF-----LQGHHASQGSEHQQAGSVH 189
>gi|430375670|ref|ZP_19430073.1| DNA polymerase III subunit epsilon [Moraxella macacae 0408225]
gi|429540901|gb|ELA08929.1| DNA polymerase III subunit epsilon [Moraxella macacae 0408225]
Length = 586
Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 5 NHVVVFTDGACPRNGKV-GASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
N V+ +TDGAC NGK A G+G V F L++ G G TNN E+ G I AL
Sbjct: 30 NQVIAYTDGACRGNGKANNAKGGFGAVVIFPNGEQLDICGGEVG-TTNNRMELLGVIMAL 88
Query: 62 KQAKS 66
+ + +
Sbjct: 89 ENSPA 93
>gi|4357|emb|CAA40448.1| ribonuclease H [Saccharomyces cerevisiae]
Length = 192
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQGAIHALKQ--AK 65
V+ DG+ NG + AGYG YF N++ ++G TNN AEI+ ALK+ K
Sbjct: 34 VYCDGSSFGNGTSSSRAGYGAYFEGAPEENISEPLLSGAQTNNRAEIEAVSEALKKIWEK 93
Query: 66 SANEKVKL 73
NEK K+
Sbjct: 94 LTNEKEKV 101
>gi|255733062|ref|XP_002551454.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131195|gb|EER30756.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 284
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 9 VFTDGACPRNGK-VGASAGYGVYFGENNPLNVA-------GKVTGRVTNNNAEIQGAIHA 60
V+ DGA NGK A +GYGVY+G N+P N A + + TN AE++ HA
Sbjct: 115 VYVDGASRGNGKSANAPSGYGVYWGPNDPRNAAVPLDKVDRGTSFKPTNQRAELRAINHA 174
Query: 61 LK 62
LK
Sbjct: 175 LK 176
>gi|392566726|gb|EIW59902.1| RNase H, partial [Trametes versicolor FP-101664 SS1]
Length = 261
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNN-AEIQG---AI 58
P V V+TDG+ + G G GV+F +P N+A +V G V +N AEI A+
Sbjct: 188 PTEDVTVYTDGSFKNDAAGGPRCGSGVWFAHEDPRNIAQRVPGPVQSNQVAEIYAVSLAV 247
Query: 59 HA 60
HA
Sbjct: 248 HA 249
>gi|302915144|ref|XP_003051383.1| hypothetical protein NECHADRAFT_80795 [Nectria haematococca mpVI
77-13-4]
gi|256732321|gb|EEU45670.1| hypothetical protein NECHADRAFT_80795 [Nectria haematococca mpVI
77-13-4]
Length = 306
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV------------TN 49
D N ++F DGAC +G AG+ +YF + N +G V+GR+ TN
Sbjct: 130 DNPNEFLIFVDGACLDSGGANPRAGWAIYFKPRSG-NDSGMVSGRLELVGPWGDYHEHTN 188
Query: 50 NNAEIQGAIHALK 62
N AE++ + AL+
Sbjct: 189 NRAELRAVLAALR 201
>gi|428313465|ref|YP_007124442.1| ribonuclease HI [Microcoleus sp. PCC 7113]
gi|428255077|gb|AFZ21036.1| ribonuclease HI [Microcoleus sp. PCC 7113]
Length = 303
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 10 FTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK--QAK 65
+TDGAC N G G+G VYF + + + G T + TNN E+Q AI ALK +A
Sbjct: 11 YTDGACAGNPGPG---GWGTVVYFTDGSVYEMGGG-TAQTTNNRMEMQAAIQALKVLKAS 66
Query: 66 SANEKVKLKRSYNDTH 81
+ E V L Y D+
Sbjct: 67 AQTESVIL---YTDSE 79
>gi|168017754|ref|XP_001761412.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687418|gb|EDQ73801.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 477
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 50 NNAEIQGAIHALKQAKSANEKVKLKRSYNDTHAQKKVRNVSSVAMR--IAQKVDY--ISH 105
NN +++ + + NEKVK+K+ ND KKV+N V M+ +KV+ + +
Sbjct: 58 NNKKVENGVKKV-----ENEKVKMKKMENDKVGLKKVKN-DKVGMKKFKNKKVEMKKVEN 111
Query: 106 D-VISVGIPFPSIQDENVKLKRSYNDTHAQKK----GIPFPSIQDEKVKLKRSYNDTHAQ 160
D V + I ++++ V++K+ ND KK + I+++K+K+K+ +N+
Sbjct: 112 DKVKNDKIKMKKVRNDKVEMKKVENDKVEMKKFENNKVEMKKIENDKIKMKKVWNEKVGM 171
Query: 161 KKVRN 165
KK+ N
Sbjct: 172 KKIAN 176
>gi|358375403|dbj|GAA91986.1| hypothetical protein AKAW_10100 [Aspergillus kawachii IFO 4308]
Length = 243
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG--RVTNNNAEIQGAIHALKQA 64
+V+ DGAC NGK GA A GVY G ++ N + +++ R TN AE+ AL A
Sbjct: 80 IVIAIDGACRNNGKTGARASIGVYHGPDHGWNESARLSPELRQTNQVAELAACRIALIDA 139
>gi|365920334|ref|ZP_09444676.1| ribonuclease HI [Cardiobacterium valvarum F0432]
gi|364578320|gb|EHM55533.1| ribonuclease HI [Cardiobacterium valvarum F0432]
Length = 150
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M+ DN + ++TDGAC N +G Y LN A +T TNN E+ AI A
Sbjct: 1 MNDDNILHIYTDGACKGNPGIGGWGALLCYGPHQKTLNGAEALT---TNNRMELTAAIEA 57
Query: 61 LKQAKSA 67
L+ K A
Sbjct: 58 LRAVKRA 64
>gi|341892193|gb|EGT48128.1| hypothetical protein CAEBREN_20816 [Caenorhabditis brenneri]
Length = 178
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYG-VYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQA 64
+V+FTDGA RNG+ A G+ VY + + + G + G+ +NN +E QG + A+K A
Sbjct: 8 LVIFTDGAALRNGQRDAKGGWAFVYRMNGSRVEIKGFIPFGKQSNNLSEFQGILEAIKHA 67
>gi|315044951|ref|XP_003171851.1| hypothetical protein MGYG_06396 [Arthroderma gypseum CBS 118893]
gi|311344194|gb|EFR03397.1| hypothetical protein MGYG_06396 [Arthroderma gypseum CBS 118893]
Length = 434
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ RNG A AG GVYFG + NV+ + G R TN AE+ A
Sbjct: 252 PPGMLKIYTDGSALRNGTSRARAGVGVYFGPGDESRNVSEPLAGSRQTNQRAELTAISRA 311
Query: 61 L 61
L
Sbjct: 312 L 312
>gi|333908477|ref|YP_004482063.1| ribonuclease H [Marinomonas posidonica IVIA-Po-181]
gi|333478483|gb|AEF55144.1| Ribonuclease H [Marinomonas posidonica IVIA-Po-181]
Length = 146
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
VV++TDGAC N +G + + G L + T TNN E+ GAI LK K
Sbjct: 3 EVVIYTDGACKGNPGIGGWGAWLTFGGHEKRLCGGERDT---TNNRMELMGAIEGLKALK 59
Query: 66 SA 67
A
Sbjct: 60 EA 61
>gi|366991353|ref|XP_003675442.1| hypothetical protein NCAS_0C00850 [Naumovozyma castellii CBS 4309]
gi|342301307|emb|CCC69075.1| hypothetical protein NCAS_0C00850 [Naumovozyma castellii CBS 4309]
Length = 362
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHAL 61
++ DG+ NG + AGYGVYF N++ +V +G TNN AE+ AL
Sbjct: 204 IYCDGSALSNGTLSPRAGYGVYFPNEPEKNISARVKSGNQTNNRAEMLAVSEAL 257
>gi|389749995|gb|EIM91166.1| hypothetical protein STEHIDRAFT_49350, partial [Stereum hirsutum
FP-91666 SS1]
Length = 157
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALK 62
D V +TDG+C NG A AG GV+FG + N++ ++ NN EI + L+
Sbjct: 42 DEAVTAYTDGSCLNNGDSDARAGSGVFFGPEDVRNISARLPANGAANNTGEIVAPLLLLQ 101
>gi|389742031|gb|EIM83218.1| ribonuclease H-like protein, partial [Stereum hirsutum FP-91666
SS1]
Length = 235
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--------TNNNAEIQGAIH 59
VVFTDGACP NG A +G G+ G + L A V V + AE+ A+
Sbjct: 49 VVFTDGACPGNGTGAARSGMGIVLGMDEVLQWALPVDDDVDKFDMSVRMSQRAELLAALE 108
Query: 60 ALKQ 63
+K+
Sbjct: 109 GVKK 112
>gi|321471679|gb|EFX82651.1| hypothetical protein DAPPUDRAFT_48831 [Daphnia pulex]
Length = 720
Score = 40.8 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 29/39 (74%), Gaps = 3/39 (7%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYND 130
++++ +D+ ++ V+ VGIPFP ++D+ V+LKR YND
Sbjct: 505 KVSEGLDFTDNNARAVVCVGIPFPYLKDKQVELKRKYND 543
>gi|297850492|ref|XP_002893127.1| hypothetical protein ARALYDRAFT_889526 [Arabidopsis lyrata subsp.
lyrata]
gi|297338969|gb|EFH69386.1| hypothetical protein ARALYDRAFT_889526 [Arabidopsis lyrata subsp.
lyrata]
Length = 1171
Score = 40.4 bits (93), Expect = 0.31, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ + VI VGIPFP++ D V LK+ YNDT+ K +
Sbjct: 657 KVSEGIDFADDNARAVIIVGIPFPNLHDIQVGLKKKYNDTYKSSKSL 703
>gi|240254129|ref|NP_173495.5| RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]
gi|332191893|gb|AEE30014.1| RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]
Length = 1175
Score = 40.4 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ + VI VGIPFP++ D V LK+ YNDT+ K +
Sbjct: 662 KVSEGIDFADDNARAVIIVGIPFPNLHDIQVGLKKKYNDTYKSSKSL 708
>gi|396080955|gb|AFN82575.1| Rad3/XPD ATP-dependent DNA-binding helicase [Encephalitozoon
romaleae SJ-2008]
Length = 678
Score = 40.4 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 12/80 (15%)
Query: 66 SANEKVKLKRSYNDTHAQKKVRNVSSVAM-----RIAQKVDY---ISHDVISVGIPFPSI 117
+ NE K+ + Y + A K+ S+V M + ++ +D+ + VI+VGIP+PS+
Sbjct: 529 AGNEFEKVMKRYKNRIAMKQ----SAVFMCVYRGKASEGIDFKDSFARAVIAVGIPYPSL 584
Query: 118 QDENVKLKRSYNDTHAQKKG 137
D V+LK+ +ND + G
Sbjct: 585 HDPQVELKKEFNDRYKSFNG 604
>gi|260808249|ref|XP_002598920.1| hypothetical protein BRAFLDRAFT_79851 [Branchiostoma floridae]
gi|229284195|gb|EEN54932.1| hypothetical protein BRAFLDRAFT_79851 [Branchiostoma floridae]
Length = 1352
Score = 40.4 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 35/47 (74%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ ++ VI+VGIP+P+ +D V+LK++YN+ H+ +G+
Sbjct: 719 KVSEGLDFADNNARAVITVGIPYPNFKDLQVELKQNYNNQHSGARGL 765
>gi|342182120|emb|CCC91599.1| putative ribonuclease H1 [Trypanosoma congolense IL3000]
Length = 303
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 7 VVVFTDGACPRNG-KVGAS---AGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHA 60
VVV+ DGAC NG + G AG+G ++G+N+P N + TN AE+ IH
Sbjct: 124 VVVYIDGACRNNGSRCGGKPPRAGFGGFYGDNDPRNFKFSLPENEPQTNQRAELSALIHV 183
Query: 61 LKQAKSANEKVKL 73
L A +A+ L
Sbjct: 184 LDIAVNAHPCYNL 196
>gi|328770876|gb|EGF80917.1| hypothetical protein BATDEDRAFT_1044 [Batrachochytrium
dendrobatidis JAM81]
Length = 639
Score = 40.4 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYISH---DVISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ H VI VG+PFP+I+D V KR YN A +G+
Sbjct: 534 KMSEGIDFSDHRARGVICVGLPFPNIKDIKVLQKRDYNTQRASSRGL 580
>gi|300707205|ref|XP_002995821.1| hypothetical protein NCER_101193 [Nosema ceranae BRL01]
gi|239605041|gb|EEQ82150.1| hypothetical protein NCER_101193 [Nosema ceranae BRL01]
Length = 695
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 19/114 (16%)
Query: 73 LKRSYNDTHAQKKVRNVSSVAMRIAQKVDY---ISHDVISVGIPFPSIQDENVKLKRSYN 129
LK+ +N + +K V + + ++ +D+ + VI VGIP+PS+ D ++LK+ +N
Sbjct: 552 LKKYHNRINEKKPVVLLCVYRGKASEGIDFKDSSARAVICVGIPYPSLVDPQIELKKEFN 611
Query: 130 DTHAQKKGIPFPSIQDEKVKLKRSYNDTHAQKKVRNVSSVAMRIAQKVDYKLLV 183
D H G R + +T A + V A+R K D+ +++
Sbjct: 612 DKHKHFNG--------------RRWYETQALRAVNQAVGRAIR--HKDDWGIII 649
>gi|302666602|ref|XP_003024898.1| hypothetical protein TRV_00903 [Trichophyton verrucosum HKI 0517]
gi|291188975|gb|EFE44287.1| hypothetical protein TRV_00903 [Trichophyton verrucosum HKI 0517]
Length = 194
Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQAK 65
+++ DGAC NG A GVY G + N + ++ TN AE+ I+ L A+
Sbjct: 41 IIIAVDGACRENGAAAPRAAIGVYVGNKSDYNASMQLDPSWATNQKAELAAGIYGLDAAR 100
Query: 66 SANE 69
N+
Sbjct: 101 EIND 104
>gi|6323890|ref|NP_013961.1| Rnh1p [Saccharomyces cerevisiae S288c]
gi|1350805|sp|Q04740.2|RNH1_YEAST RecName: Full=Ribonuclease H; Short=RNase H
gi|887615|emb|CAA90205.1| Rnh1p [Saccharomyces cerevisiae]
gi|190408461|gb|EDV11726.1| ribonuclease H [Saccharomyces cerevisiae RM11-1a]
gi|207342140|gb|EDZ69998.1| YMR234Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259148820|emb|CAY82065.1| Rnh1p [Saccharomyces cerevisiae EC1118]
gi|285814239|tpg|DAA10134.1| TPA: Rnh1p [Saccharomyces cerevisiae S288c]
gi|323307664|gb|EGA60929.1| Rnh1p [Saccharomyces cerevisiae FostersO]
gi|323332148|gb|EGA73559.1| Rnh1p [Saccharomyces cerevisiae AWRI796]
gi|323336061|gb|EGA77335.1| Rnh1p [Saccharomyces cerevisiae Vin13]
gi|323347045|gb|EGA81321.1| Rnh1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323353174|gb|EGA85474.1| Rnh1p [Saccharomyces cerevisiae VL3]
gi|392297404|gb|EIW08504.1| Rnh1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 348
Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQGAIHALKQ--AK 65
V+ DG+ NG + AGYG YF N++ ++G TNN AEI+ ALK+ K
Sbjct: 190 VYCDGSSFGNGTSSSRAGYGAYFEGAPEENISEPLLSGAQTNNRAEIEAVSEALKKIWEK 249
Query: 66 SANEKVKL 73
NEK K+
Sbjct: 250 LTNEKEKV 257
>gi|85860563|ref|YP_462765.1| ribonuclease H [Syntrophus aciditrophicus SB]
gi|123517534|sp|Q2LWY9.1|RNH_SYNAS RecName: Full=Ribonuclease H; Short=RNase H
gi|85723654|gb|ABC78597.1| ribonuclease H [Syntrophus aciditrophicus SB]
Length = 173
Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGV--YFGENN-PLNVAGKVTGRVTNNNAEIQGAI 58
DP V+++TDGAC N G GYGV +GE+ L+ ++T TNN EI AI
Sbjct: 19 DPQKQVIIYTDGACLGNPGPG---GYGVVLLYGEHRKELSGGYRLT---TNNRMEILAAI 72
Query: 59 HALKQAKSA 67
L+ KSA
Sbjct: 73 KGLEALKSA 81
>gi|68473699|ref|XP_719174.1| hypothetical protein CaO19.5614 [Candida albicans SC5314]
gi|46440980|gb|EAL00281.1| hypothetical protein CaO19.5614 [Candida albicans SC5314]
Length = 285
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENN------PLNVAGKVTG-RVTNNNAEIQGAIHA 60
V+ DGA NG+ A +GYGVY+G N+ PL+ K T + TN AE+ G HA
Sbjct: 117 VYVDGASRGNGQTSKAPSGYGVYYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGVKHA 176
Query: 61 LK 62
LK
Sbjct: 177 LK 178
>gi|401825484|ref|XP_003886837.1| RAD3-like DNA-binding helicase [Encephalitozoon hellem ATCC 50504]
gi|392997993|gb|AFM97856.1| RAD3-like DNA-binding helicase [Encephalitozoon hellem ATCC 50504]
Length = 678
Score = 40.4 bits (93), Expect = 0.38, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 14/92 (15%)
Query: 56 GAIHALKQAKSA--NEKVKLKRSYNDTHAQKKVRNVSSVAM-----RIAQKVDY---ISH 105
GA L + KS NE K+ + Y + A K+ S++ M + ++ +D+ +
Sbjct: 517 GASGILIEPKSGAGNEFEKVMKRYKNRIATKQ----SAIFMCVYRGKASEGIDFKDSFAR 572
Query: 106 DVISVGIPFPSIQDENVKLKRSYNDTHAQKKG 137
VI+VGIP+PS+ D V+LK+ +ND + G
Sbjct: 573 AVIAVGIPYPSLHDPQVELKKEFNDRYKSFNG 604
>gi|156050101|ref|XP_001591012.1| hypothetical protein SS1G_07636 [Sclerotinia sclerotiorum 1980]
gi|154692038|gb|EDN91776.1| hypothetical protein SS1G_07636 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 146
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 18 NGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALK 62
NGK GA AGYG++F + + NV+ + G TN AE+ A+ AL+
Sbjct: 7 NGKAGAVAGYGIFFSDGDERNVSAPLEGTPQTNQRAELTAALRALE 52
>gi|389745261|gb|EIM86442.1| hypothetical protein STEHIDRAFT_57307, partial [Stereum hirsutum
FP-91666 SS1]
Length = 250
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEI 54
+D + + V+TDG+C NG A AG G++FG ++ N + +V + TN E+
Sbjct: 174 LDEQDEITVYTDGSCLNNGDDNARAGSGIWFGPDDERNKSLRVPSAMPQTNQTGEV 229
>gi|451927320|gb|AGF85198.1| hypothetical protein glt_00389 [Moumouvirus goulette]
Length = 206
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIH 59
M ++VVFTDG+C NGK A G G++F +++ T G TN E+ ++
Sbjct: 1 MSKLKNIVVFTDGSCMNNGKKYAIGGIGIHFPHGEFKDISRLFTKGCCTNQRTELYAILY 60
Query: 60 ALK 62
A+K
Sbjct: 61 AIK 63
>gi|392563659|gb|EIW56838.1| RNase H [Trametes versicolor FP-101664 SS1]
Length = 276
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNN-AEI 54
P + V+TDG+ +G G +G GV+F + +P N+A V G +N AEI
Sbjct: 188 PTEDISVYTDGSYKEDGAAGPRSGAGVWFADADPRNIAAPVPGDTQSNQVAEI 240
>gi|358396312|gb|EHK45693.1| hypothetical protein TRIATDRAFT_88906 [Trichoderma atroviride IMI
206040]
Length = 231
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N +V+ G C G GA A +GVYFG +P N + + + A + + AL+QA
Sbjct: 57 NSLVLSIGGTCRNPGTPGARAAWGVYFGPESPYNASALLDPALPQTKARAE--MEALRQA 114
Query: 65 KS 66
S
Sbjct: 115 LS 116
>gi|321476840|gb|EFX87800.1| hypothetical protein DAPPUDRAFT_311920 [Daphnia pulex]
Length = 824
Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 3/39 (7%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYND 130
++++ +D+ ++ VI VGIPFP+ +D V+LKR YND
Sbjct: 538 KVSEGLDFTDNNARAVICVGIPFPNFKDTQVELKRQYND 576
>gi|238883043|gb|EEQ46681.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 277
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENN------PLNVAGKVTG-RVTNNNAEIQGAIHA 60
V+ DGA NG+ A +GYGVY+G N+ PL+ K T + TN AE+ G HA
Sbjct: 109 VYVDGASRGNGQTSKAPSGYGVYYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGVKHA 168
Query: 61 LK 62
LK
Sbjct: 169 LK 170
>gi|241956750|ref|XP_002421095.1| ribonuclease H, putative [Candida dubliniensis CD36]
gi|223644438|emb|CAX41253.1| ribonuclease H, putative [Candida dubliniensis CD36]
Length = 266
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENN------PLNVAGKVTG-RVTNNNAEIQGAIHA 60
V+ DGA NG+ A +GYGVY+G N+ PL+ K T + TN AE+ G HA
Sbjct: 98 VYVDGAARGNGQTSKAPSGYGVYYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGVKHA 157
Query: 61 LK 62
LK
Sbjct: 158 LK 159
>gi|50304317|ref|XP_452108.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641240|emb|CAH02501.1| KLLA0B12958p [Kluyveromyces lactis]
Length = 370
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHAL 61
V+ DG+ NG GA AGYG+YF E +A +T G TNN AEI AL
Sbjct: 213 VYCDGSSFNNGFEGARAGYGIYF-EGEDRRIARPLTNGNQTNNRAEISAVSDAL 265
>gi|395331595|gb|EJF63976.1| ribonuclease H-like protein, partial [Dichomitus squalens LYAD-421
SS1]
Length = 250
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M PD ++V+TDG+C NG A AG GV++G+ + +V TNN AE+ I
Sbjct: 102 MSPDV-MIVYTDGSCKGNGTEHAVAGVGVWWGDYDSRHVG----PHQTNNRAELIAIIRV 156
Query: 61 LKQAKS 66
L+ +
Sbjct: 157 LETTPT 162
>gi|410078688|ref|XP_003956925.1| hypothetical protein KAFR_0D01440 [Kazachstania africana CBS 2517]
gi|372463510|emb|CCF57790.1| hypothetical protein KAFR_0D01440 [Kazachstania africana CBS 2517]
Length = 356
Score = 40.0 bits (92), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHAL 61
V+ DG+ NG A AGYGVYF + N++ ++ G TNN EIQ AL
Sbjct: 198 VYCDGSSLANGTAYARAGYGVYFEGDPTSNISERLRVGAQTNNRGEIQAVSRAL 251
>gi|148244507|ref|YP_001219201.1| ribonuclease H [Candidatus Vesicomyosocius okutanii HA]
gi|187611402|sp|A5CX29.1|RNH_VESOH RecName: Full=Ribonuclease H; Short=RNase H
gi|146326334|dbj|BAF61477.1| ribonuclease H [Candidatus Vesicomyosocius okutanii HA]
Length = 148
Score = 40.0 bits (92), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 28/124 (22%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTG---RVTNNNAEIQGAIH 59
N +V++TDG C N +G G+GV+ +G+ + K+ G + TNN E+ I
Sbjct: 3 NRIVIYTDGGCRCNTGIG---GWGVWLKYGDYDK-----KLKGNEKKTTNNRMELTATIK 54
Query: 60 ALKQAKSANEKVKL-------KRSYNDTHAQKKVRNVSSVAMR------IAQKVDYIS-- 104
AL++ KS + L N+ KV+N + R + Q++D ++
Sbjct: 55 ALEEIKSNQIGIDLFTDSKYVITGINEWMKNWKVKNWETSKKRPVKNVDLWQRLDVLNKQ 114
Query: 105 HDVI 108
HDVI
Sbjct: 115 HDVI 118
>gi|429962084|gb|ELA41628.1| hypothetical protein VICG_01376 [Vittaforma corneae ATCC 50505]
Length = 657
Score = 40.0 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 26/108 (24%)
Query: 39 VAGKVTGRVTNNN----AEIQGAIHALKQAKSANEKVKLKRSYNDTHAQKKVRNVSSVAM 94
+AG+++G + E + AI A KQ QKK ++
Sbjct: 485 LAGRISGAIVEPKDGGMVEFEKAIEAYKQ-----------------RIQKKATSIFICVY 527
Query: 95 R--IAQKVDY---ISHDVISVGIPFPSIQDENVKLKRSYNDTHAQKKG 137
R ++ VD+ S V+++GIP+PSI+D + LK+ YND + G
Sbjct: 528 RGKASEGVDFRDEYSRAVVAIGIPYPSIRDPQIGLKKEYNDKTSGYNG 575
>gi|441432460|ref|YP_007354502.1| ribonuclease H [Acanthamoeba polyphaga moumouvirus]
gi|371944819|gb|AEX62640.1| putative ribonuclease H protein [Moumouvirus Monve]
gi|440383540|gb|AGC02066.1| ribonuclease H [Acanthamoeba polyphaga moumouvirus]
Length = 203
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALK 62
++VVFTDG+C NGK A G G++F +++ T G TN E+ ++A+K
Sbjct: 8 NIVVFTDGSCMNNGKKNAVGGIGIHFPCGEFKDISRVFTKGCCTNQRTELFAILYAIK 65
>gi|308806570|ref|XP_003080596.1| putative BRCA1 interacting protein C-terminal helicase 1 (ISS)
[Ostreococcus tauri]
gi|116059057|emb|CAL54764.1| putative BRCA1 interacting protein C-terminal helicase 1 (ISS)
[Ostreococcus tauri]
Length = 1045
Score = 40.0 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 3/39 (7%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYND 130
+I++ +D+ + VISVGIP+P+I+D V KRSYND
Sbjct: 675 KISEGIDFADANARAVISVGIPYPNIKDSLVAEKRSYND 713
>gi|119492692|ref|XP_001263665.1| RNase H domain protein [Neosartorya fischeri NRRL 181]
gi|119411825|gb|EAW21768.1| RNase H domain protein [Neosartorya fischeri NRRL 181]
Length = 321
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNP-----LNVAGKVTGRV------TNNNAE 53
N ++++TDGAC NG+ AG GV F E P A ++ G T+N AE
Sbjct: 147 NEMLIYTDGACLGNGQANPRAGCGVVFREERPGRMGHFAFALELQGPTGHPRPQTSNRAE 206
Query: 54 IQGAIHALK 62
++ I AL+
Sbjct: 207 LRAVIAALQ 215
>gi|324519243|gb|ADY47325.1| Ribonuclease H1 [Ascaris suum]
Length = 245
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKS 66
VV+ DGA + AG G+++G ++P N+ VTG ++TN AE+Q A+ QA S
Sbjct: 69 VVYCDGA---YDWLTGKAGIGIFWGPSDPRNLHLAVTGCKITNIRAEVQAVSIAILQASS 125
Query: 67 ANEKVKLKR 75
+K++R
Sbjct: 126 ----LKMQR 130
>gi|393239052|gb|EJD46586.1| ribonuclease H-like protein [Auricularia delicata TFB-10046 SS5]
Length = 406
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 8 VVFTDGACPRNGKVG-ASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+++TDGAC NG A AG GV+ + ++ + G TNN AE+ I AL++
Sbjct: 128 ILYTDGACSNNGNGAIALAGIGVWSAADERRRLSERCPGTQTNNRAELIAIIRALEE 184
>gi|449550142|gb|EMD41107.1| hypothetical protein CERSUDRAFT_91866 [Ceriporiopsis subvermispora
B]
Length = 206
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENN--------PLNVAGKVTGRVTNNNAEIQGAIH 59
+VFTDGAC NGK A+AG G G + P++ + + +N AE+ AI+
Sbjct: 63 IVFTDGACLSNGKSHATAGIGSAIGATDAEFHQWSIPIDDSVDCFPKQSNQRAELLAAIY 122
Query: 60 ALKQAKSA 67
L+ A
Sbjct: 123 GLRLLSDA 130
>gi|300871726|ref|YP_003786599.1| ribonuclease H [Brachyspira pilosicoli 95/1000]
gi|404476350|ref|YP_006707781.1| ribonuclease H [Brachyspira pilosicoli B2904]
gi|431807531|ref|YP_007234429.1| ribonuclease H [Brachyspira pilosicoli P43/6/78]
gi|300689427|gb|ADK32098.1| ribonuclease H [Brachyspira pilosicoli 95/1000]
gi|404437839|gb|AFR71033.1| ribonuclease H [Brachyspira pilosicoli B2904]
gi|430780890|gb|AGA66174.1| ribonuclease H [Brachyspira pilosicoli P43/6/78]
Length = 163
Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVA-GKVTGRVTNNNAEIQGAIH 59
M DN ++++TDG C N +GA + E + L + G+ TNN E+Q AI
Sbjct: 1 MQKDN-IIIYTDGGCRGNPGIGAWG--AILLSEKHNLRLEIGESEEHTTNNKMEMQAAIK 57
Query: 60 ALKQAK 65
AL++ K
Sbjct: 58 ALERLK 63
>gi|301105994|ref|XP_002902080.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098700|gb|EEY56752.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 281
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
PD+ +V F DG+ RNG+ A Y F + NV + G TNN AE A+ AL
Sbjct: 132 PDS-MVAFCDGSALRNGQRDCDAAYARVFPHDQASNVVRTLNGPWATNNRAEYMAALAAL 190
Query: 62 KQAK 65
+ A+
Sbjct: 191 QWAR 194
>gi|46199493|ref|YP_005160.1| ribonuclease H [Thermus thermophilus HB27]
gi|81830588|sp|Q72IE1.1|RNH_THET2 RecName: Full=Ribonuclease H; Short=RNase H
gi|46197119|gb|AAS81533.1| ribonuclease H [Thermus thermophilus HB27]
Length = 166
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P V +FTDGAC N G A + F + L G+ TNN E++ AI LK
Sbjct: 5 PRKRVALFTDGACLGNPGPGGWAAL-LRFNAHEKLLSGGEAC--TTNNRMELKAAIEGLK 61
Query: 63 QAKSANEKVKLKRSYNDTHAQKKV 86
K E V L Y D+H KK
Sbjct: 62 ALKEPCE-VDL---YTDSHYLKKA 81
>gi|395323130|gb|EJF55627.1| hypothetical protein DICSQDRAFT_73300, partial [Dichomitus squalens
LYAD-421 SS1]
Length = 278
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNN 51
VVV TDG+C NG+ GA AG GVY +N+ +N + ++ + +N
Sbjct: 216 VVVATDGSCINNGQRGAIAGAGVYVDDNHHMNASLRLPADMDQSN 260
>gi|117925405|ref|YP_866022.1| RNase HI [Magnetococcus marinus MC-1]
gi|117609161|gb|ABK44616.1| RNase HI [Magnetococcus marinus MC-1]
Length = 238
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAI 58
+ PD ++++TDGAC N G G+GV+ +GE + + TNN E+ AI
Sbjct: 82 LAPDMEIILYTDGACSGNPGPG---GWGVHGRYGEQMADQMG--WAPQTTNNRMEMLAAI 136
Query: 59 HALK 62
HAL+
Sbjct: 137 HALE 140
>gi|401839342|gb|EJT42606.1| RNH1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 349
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALK 62
D + V+ DG+ NG + AGYG YF N++ + +G TNN AEI+ ALK
Sbjct: 186 DKSMNVYCDGSSFGNGTSSSRAGYGAYFEGAPEENISEPLMSGAQTNNRAEIEAVSEALK 245
Query: 63 Q----AKSANEKVKLK 74
+ + N+KVK +
Sbjct: 246 KIWDNLTNGNDKVKYQ 261
>gi|444318916|ref|XP_004180115.1| hypothetical protein TBLA_0D00880 [Tetrapisispora blattae CBS 6284]
gi|387513157|emb|CCH60596.1| hypothetical protein TBLA_0D00880 [Tetrapisispora blattae CBS 6284]
Length = 439
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHAL 61
V+ DG+ NG + AGYGV+F + +++ ++T G TNN AE+Q AL
Sbjct: 281 VYCDGSALSNGTSTSRAGYGVHFTDEPQNDISERLTNGAQTNNRAELQAVSSAL 334
>gi|449519583|ref|XP_004166814.1| PREDICTED: Fanconi anemia group J protein homolog [Cucumis sativus]
Length = 1239
Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + VI VGIPFP++ D V LK+ +ND + K +
Sbjct: 665 KVSEGIDFSDDNARVVIIVGIPFPNVNDIQVALKKKFNDAYKMSKNL------------- 711
Query: 152 RSYNDTHAQKKVRNVSSVAMR-IAQKVDY 179
S N+ + Q+ R ++ A R I K DY
Sbjct: 712 LSGNEWYCQQAFRALNQAAGRCIRHKFDY 740
>gi|392569285|gb|EIW62458.1| RNase H, partial [Trametes versicolor FP-101664 SS1]
Length = 259
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLN 38
V VFTDG+C +NG A+AG GV+FG+ + N
Sbjct: 189 EVEVFTDGSCVKNGSADAAAGSGVWFGDGDRRN 221
>gi|196012030|ref|XP_002115878.1| hypothetical protein TRIADDRAFT_30066 [Trichoplax adhaerens]
gi|190581654|gb|EDV21730.1| hypothetical protein TRIADDRAFT_30066 [Trichoplax adhaerens]
Length = 995
Score = 39.7 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 33/47 (70%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ + VI+VGIP+P+I+D ++LK+ YND + ++ +
Sbjct: 770 KVSEGLDFADDNARAVITVGIPYPNIKDLKIELKKKYNDKFSAQRNL 816
>gi|405117717|gb|AFR92492.1| ribonuclease H [Cryptococcus neoformans var. grubii H99]
Length = 292
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYF---GENNPLNVAGKVTGRV-TNNNAEI 54
+++VV+TDG+ NG+VG+ AG G+++ GE + N A +V G TNN E+
Sbjct: 117 HYLVVYTDGSARGNGQVGSRAGAGIWWGSHGEASKQNRAERVPGEPQTNNRGEL 170
>gi|254503050|ref|ZP_05115201.1| RNase H [Labrenzia alexandrii DFL-11]
gi|222439121|gb|EEE45800.1| RNase H [Labrenzia alexandrii DFL-11]
Length = 150
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAI 58
M +N V ++TDGAC N G G+GV FGE+ G+V TNN E+ AI
Sbjct: 1 MSQENRVTIYTDGACSGNPGPG---GWGVIMRFGEHERELKGGEV--ETTNNRMELTAAI 55
Query: 59 HALKQAK 65
AL K
Sbjct: 56 EALNALK 62
>gi|414886611|tpg|DAA62625.1| TPA: hypothetical protein ZEAMMB73_124196, partial [Zea mays]
Length = 113
Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 110 VGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
VGIPFP+I D VKLKR YND++ K +
Sbjct: 1 VGIPFPNINDVQVKLKRRYNDSYKSSKHL 29
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+I D +VKLKR YND++ K
Sbjct: 2 GIPFPNINDVQVKLKRRYNDSYKSSK 27
>gi|406863280|gb|EKD16328.1| hypothetical protein MBM_05622 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 342
Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYF-GENNPLNVAGKV--TGRVTNNNAEIQGAIHAL 61
+VV GAC NG+ GA AGYGV+ G LN +G V TN AE+ A+ AL
Sbjct: 185 MVVAVHGACRSNGRAGAKAGYGVFVSGLAEDLNRSGLVPYLSPQTNQYAELFAAMRAL 242
>gi|341892209|gb|EGT48144.1| hypothetical protein CAEBREN_24105 [Caenorhabditis brenneri]
Length = 384
Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQG 56
+++TDG+ NG+ GA GYGV + L+ +G + G TNN E++G
Sbjct: 6 IIYTDGSTVNNGREGARGGYGVVCLFDRQLDTSGSFSFGNQTNNRYELEG 55
>gi|149236513|ref|XP_001524134.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452510|gb|EDK46766.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 331
Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENN------PLNVAGKVTG-RVTNNNAEIQGAIHA 60
++TDGAC N + A++GYGVY+G+++ PL+ V TN AE+ +HA
Sbjct: 151 IYTDGACRGNNRRRLAASGYGVYYGKHDIRNKAVPLSDVDDVDNIPPTNQRAELHAVLHA 210
Query: 61 LKQAKSANEKVKLKRSY 77
L+ +K K Y
Sbjct: 211 LRNIDKELDKAIYKCRY 227
>gi|55981525|ref|YP_144822.1| ribonuclease H [Thermus thermophilus HB8]
gi|401007|sp|P29253.2|RNH_THET8 RecName: Full=Ribonuclease H; Short=RNase H
gi|538673|pir||A42673 ribonuclease H (EC 3.1.26.4) - Thermus aquaticus
gi|157833693|pdb|1RIL|A Chain A, Crystal Structure Of Ribonuclease H From Thermus
Thermophilus Hb8 Refined At 2.8 Angstroms Resolution
gi|55772938|dbj|BAD71379.1| ribonuclease H (RNase H) [Thermus thermophilus HB8]
Length = 166
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P V +FTDGAC N G A + F + L G+ TNN E++ AI LK
Sbjct: 5 PRKRVALFTDGACLGNPGPGGWAAL-LRFHAHEKLLSGGEAC--TTNNRMELKAAIEGLK 61
Query: 63 QAKSANEKVKLKRSYNDTHAQKKV 86
K E V L Y D+H KK
Sbjct: 62 ALKEPCE-VDL---YTDSHYLKKA 81
>gi|268569974|ref|XP_002640663.1| C. briggsae CBR-DOG-1 protein [Caenorhabditis briggsae]
Length = 869
Score = 39.7 bits (91), Expect = 0.62, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYI---SHDVISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ + VISVGIP+P+ D+ V K+ YND ++++ GI
Sbjct: 729 KVSEGIDFADDRARVVISVGIPYPNAMDDQVNAKKMYNDQNSKEMGI 775
>gi|341898717|gb|EGT54652.1| hypothetical protein CAEBREN_25363 [Caenorhabditis brenneri]
Length = 178
Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 9 VFTDGACPRNGKVGASAGYG-VYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQAKS 66
+FTDGA RNG+ A G+ VY N + G + G+ +NN +E QG + +K A S
Sbjct: 10 IFTDGAAFRNGRWDAKGGWAFVYEMNGNLVQRKGHIPFGKQSNNLSEFQGILEGIKHAYS 69
>gi|17505482|ref|NP_492581.1| Protein RNH-1.3 [Caenorhabditis elegans]
gi|3873975|emb|CAB03838.1| Protein RNH-1.3 [Caenorhabditis elegans]
Length = 139
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 10 FTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQAK 65
+TDG+ NG+ G+ GYGV+ + NV+G G TNN E++ HA + A+
Sbjct: 6 YTDGSALGNGQQGSRGGYGVHVPSDTSKNVSGSYPHGPQTNNRYELEAIKHATQMAR 62
>gi|341898711|gb|EGT54646.1| hypothetical protein CAEBREN_25594 [Caenorhabditis brenneri]
Length = 384
Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQG 56
+++TDG+ NG+ GA GYGV + L+ +G + G TNN E++G
Sbjct: 6 IIYTDGSTVNNGREGARGGYGVVCLFDRQLDTSGSFSFGNQTNNRYELEG 55
>gi|443477354|ref|ZP_21067208.1| Ribonuclease H [Pseudanabaena biceps PCC 7429]
gi|443017550|gb|ELS31967.1| Ribonuclease H [Pseudanabaena biceps PCC 7429]
Length = 312
Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
P + + TDGAC +N G G+GV +F + + + G + TNN E+QGAI A
Sbjct: 165 PSKIISIHTDGACSKNPGPG---GWGVVIHFDDGSTKEIGGGIR-ETTNNQMELQGAIAA 220
Query: 61 LK 62
L+
Sbjct: 221 LE 222
>gi|374106133|gb|AEY95043.1| FABL017Cp [Ashbya gossypii FDAG1]
Length = 321
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALK 62
VV+ DG+ NG A+AG GVYF + L+++ +T TNN AE+ A AL+
Sbjct: 158 VVYCDGSALANGSARATAGIGVYFRDEPHLSLSEPLTLPPYTNNRAELLAASRALE 213
>gi|302306518|ref|NP_982930.2| ABL017Cp [Ashbya gossypii ATCC 10895]
gi|299788554|gb|AAS50754.2| ABL017Cp [Ashbya gossypii ATCC 10895]
Length = 327
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALK 62
VV+ DG+ NG A+AG GVYF + L+++ +T TNN AE+ A AL+
Sbjct: 164 VVYCDGSALANGSARATAGIGVYFRDEPHLSLSEPLTLPPYTNNRAELLAASRALE 219
>gi|381191023|ref|ZP_09898535.1| ribonuclease H [Thermus sp. RL]
gi|380451112|gb|EIA38724.1| ribonuclease H [Thermus sp. RL]
Length = 166
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P V +FTDGAC N G A + F ++ L G+ TNN E++ AI LK
Sbjct: 5 PRKRVXLFTDGACLGNPGPGGWAAL-LRFXAHDKLLSGGEPC--TTNNRMELKAAIEGLK 61
Query: 63 QAKSANEKVKLKRSYNDTHAQKKV 86
K E V L Y D+H KK
Sbjct: 62 ALKEPCE-VDL---YTDSHYLKKA 81
>gi|384431738|ref|YP_005641098.1| Ribonuclease H [Thermus thermophilus SG0.5JP17-16]
gi|333967206|gb|AEG33971.1| Ribonuclease H [Thermus thermophilus SG0.5JP17-16]
Length = 166
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P V +FTDGAC N G A + F + L G+ TNN E++ AI LK
Sbjct: 5 PRKRVTLFTDGACLGNPGPGGWAAL-LRFNAHEKLLSGGEPC--TTNNRMELKAAIEGLK 61
Query: 63 QAKSANEKVKLKRSYNDTHAQKKV 86
K E V L Y D+H KK
Sbjct: 62 ALKEPCE-VDL---YTDSHYLKKA 81
>gi|225619653|ref|YP_002720910.1| ribonuclease H [Brachyspira hyodysenteriae WA1]
gi|225214472|gb|ACN83206.1| ribonuclease H [Brachyspira hyodysenteriae WA1]
Length = 163
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M DN ++++TDG C N +GA A + N L + G+ TNN E++ AI A
Sbjct: 1 MTKDN-IIIYTDGGCRGNPGLGAWAAILISEKHNLRLEI-GESEDNTTNNRMEMKAAIKA 58
Query: 61 LKQAK 65
L++ K
Sbjct: 59 LERLK 63
>gi|451994217|gb|EMD86688.1| hypothetical protein COCHEDRAFT_1218244 [Cochliobolus
heterostrophus C5]
Length = 237
Score = 39.3 bits (90), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV------TNNNAEIQGAIHAL 61
++F DGAC NGK A AG GV +G ++ ++ +T V +N E+ A L
Sbjct: 70 IIFIDGACTNNGKPAAKAGVGVAYGNDDSSQMSKPITNTVGSFPLRSNQRVELYAAKSGL 129
Query: 62 KQAKSANEK 70
+ A++K
Sbjct: 130 EFFSEAHDK 138
>gi|357164499|ref|XP_003580074.1| PREDICTED: N-acetyltransferase ESCO2-like [Brachypodium distachyon]
Length = 318
Score = 39.3 bits (90), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 60 ALKQAKSANEKVKLKRSYNDTHAQKKVRNVSSVAMRIAQKVDYISHDVISVGIPFPSIQD 119
A +++ E K +S+ D K RN + + Q D++ H G+ + D
Sbjct: 24 ARRESSGPTEVAKKPKSFADAKVLNKKRNYGQFHLELGQP-DFLLHMCAGCGMMYARGND 82
Query: 120 ENVKLKRSYNDTHAQKKGIPFPSIQDEKV 148
E+ K+ R+Y+ ++ + G+PF +DE V
Sbjct: 83 EDEKVHRAYHKSYFE--GVPFKGWRDEIV 109
>gi|303289152|ref|XP_003063864.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454932|gb|EEH52237.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 256
Score = 39.3 bits (90), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 107 VISVGIPFPSIQDENVKLKRSYND-THAQKKGI 138
V VGIPFPS+ D VKLKR YN+ ++K+G+
Sbjct: 148 VFCVGIPFPSLGDVKVKLKREYNNHVESKKQGL 180
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKKVRNVSS 168
GIPFPS+ D KVKLKR YN+ H + K + + S
Sbjct: 152 GIPFPSLGDVKVKLKREYNN-HVESKKQGLMS 182
>gi|581811|emb|CAA43026.1| ribonuclease h [Thermus thermophilus HB8]
Length = 166
Score = 39.3 bits (90), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P V +FTDGAC N G A + F + L G+ TNN E++ AI LK
Sbjct: 5 PRKRVALFTDGACLGNPGPGGWAAL-LRFHAHEKLLSGGEAW--TTNNRMELKAAIEGLK 61
Query: 63 QAKSANEKVKLKRSYNDTHAQKKV 86
K E V L Y D+H KK
Sbjct: 62 ALKEPCE-VDL---YTDSHYLKKA 81
>gi|326796076|ref|YP_004313896.1| ribonuclease H [Marinomonas mediterranea MMB-1]
gi|326546840|gb|ADZ92060.1| Ribonuclease H [Marinomonas mediterranea MMB-1]
Length = 147
Score = 39.3 bits (90), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V ++TDGAC N +G G+G + FG++ G+ TNN E+ GAI LK
Sbjct: 3 EVTIYTDGACKGNPGIG---GWGAWLTFGQHEKKMCGGEHD--TTNNRMELMGAIEGLKA 57
Query: 64 AKSA 67
K +
Sbjct: 58 LKES 61
>gi|393227406|gb|EJD35086.1| hypothetical protein AURDEDRAFT_31504, partial [Auricularia
delicata TFB-10046 SS5]
Length = 136
Score = 39.3 bits (90), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V V+TDG+C A AG G+ +G + N A +V G+ ++N EI +HA + A
Sbjct: 1 VSVYTDGSCLHANTRFARAGAGLCWGLGSSKNTAHRVPGKQSSNRGEILAVLHAARAA 58
>gi|299134143|ref|ZP_07027336.1| Ribonuclease H [Afipia sp. 1NLS2]
gi|298590890|gb|EFI51092.1| Ribonuclease H [Afipia sp. 1NLS2]
Length = 151
Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
P HVV+FTDGAC N G G+G + FGE G+ TNN E+ AI A
Sbjct: 5 PRPHVVIFTDGACSGNPGPG---GWGAILRFGEIEKEMKGGENP--TTNNRMELMAAISA 59
Query: 61 LKQAK 65
L+ K
Sbjct: 60 LEALK 64
>gi|328767327|gb|EGF77377.1| hypothetical protein BATDEDRAFT_37452 [Batrachochytrium
dendrobatidis JAM81]
Length = 172
Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV--TGRVTNNNAEIQGAIHAL 61
H +V+TDG+C NG+ A+ G G++FG + N G V TNN E+ AL
Sbjct: 25 HRLVYTDGSCLNNGRPDATGGIGIWFGTESAYN-GGMVYPFPSPTNNACELFAVCMAL 81
>gi|312076541|ref|XP_003140907.1| hypothetical protein LOAG_05322 [Loa loa]
Length = 704
Score = 39.3 bits (90), Expect = 0.77, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 95 RIAQKVDYI---SHDVISVGIPFPSIQDENVKLKRSYNDTHAQK 135
++++ +D+ + V++VGIPFPS DE V K+ YND + K
Sbjct: 556 KVSEGIDFTDDRARCVVTVGIPFPSAMDEQVVEKKKYNDDYCTK 599
>gi|303388455|ref|XP_003072462.1| Rad3/XPD ATP-dependent DNA-binding helicase [Encephalitozoon
intestinalis ATCC 50506]
gi|303301602|gb|ADM11102.1| Rad3/XPD ATP-dependent DNA-binding helicase [Encephalitozoon
intestinalis ATCC 50506]
Length = 678
Score = 39.3 bits (90), Expect = 0.77, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 63 QAKSANEKVKLKRSYNDTHAQKKVRNVSSVAMR--IAQKVDY---ISHDVISVGIPFPSI 117
++ NE K+ + Y + A K+ R + R ++ +D+ + VI+VGIP+PS+
Sbjct: 526 KSGGGNEFEKVMKRYKNRIATKQ-RAIFMCVYRGKASEGIDFKDSFARAVIAVGIPYPSL 584
Query: 118 QDENVKLKRSYNDTHAQKKG 137
D V+LK+ +ND + G
Sbjct: 585 HDPQVELKKEFNDRYKSFNG 604
>gi|359405638|ref|ZP_09198385.1| ATP-binding cassette protein, ChvD family [Prevotella stercorea DSM
18206]
gi|357557960|gb|EHJ39478.1| ATP-binding cassette protein, ChvD family [Prevotella stercorea DSM
18206]
Length = 565
Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 16 PRNGKVGASAGYGV-YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANEKVKLK 74
P G+V S GY V Y ++ PLN A V V +Q A ALK+ + NEK L+
Sbjct: 64 PTQGEVVWSPGYSVGYLPQDPPLNEAKTVKENVMEG---VQQAYDALKEYEEINEKFGLE 120
Query: 75 RSYNDTHAQKKVRNVSSVAMRIAQKVDYISHD 106
Y D K+ S I D + D
Sbjct: 121 EYYGDPEKMDKLMQRQSEVQDIIDATDAWNMD 152
>gi|297850494|ref|XP_002893128.1| hypothetical protein ARALYDRAFT_472311 [Arabidopsis lyrata subsp.
lyrata]
gi|297338970|gb|EFH69387.1| hypothetical protein ARALYDRAFT_472311 [Arabidopsis lyrata subsp.
lyrata]
Length = 1138
Score = 39.3 bits (90), Expect = 0.80, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKK 136
++++ +D+ + VI VGIPFP++ D V+LKR YNDT+ K
Sbjct: 635 KVSEGLDFSDDNARAVIIVGIPFPNLGDILVELKRKYNDTNKSSK 679
Score = 35.8 bits (81), Expect = 8.7, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP++ D V+LKR YNDT+ K
Sbjct: 654 GIPFPNLGDILVELKRKYNDTNKSSK 679
>gi|302906464|ref|XP_003049488.1| hypothetical protein NECHADRAFT_82905 [Nectria haematococca mpVI
77-13-4]
gi|256730423|gb|EEU43775.1| hypothetical protein NECHADRAFT_82905 [Nectria haematococca mpVI
77-13-4]
Length = 667
Score = 39.3 bits (90), Expect = 0.80, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGE--NNPLNVAGKVTGRV------------TNN 50
N V+ +TDGAC NG++ AG+ V FG+ ++ V+ R+ T+N
Sbjct: 278 NRVLAYTDGACINNGQLEPRAGWAVVFGKPGSDQEGSQNVVSSRLENEGPFGDDSVATSN 337
Query: 51 NAEIQGAIHALKQAKSANEKVK 72
AE++ AI AL+ +E K
Sbjct: 338 RAELRAAIAALRVCDWHDEGFK 359
>gi|392559957|gb|EIW53141.1| ribonuclease H-like protein, partial [Trametes versicolor
FP-101664 SS1]
Length = 152
Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQA 64
V+TDG+ R+ AG GV +G N NVA +V G TNN AE+ +HAL+ A
Sbjct: 20 VWTDGS-ARSVNDTMCAGAGVCWGLNATANVALRVPGESQTNNRAELFAVLHALRHA 75
>gi|221316468|ref|ZP_03598273.1| ribonuclease H [Bacillus subtilis subsp. subtilis str. NCIB 3610]
Length = 93
Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV++ DGA NGK G+G + + VTNN EI+ AI ALKQ K+
Sbjct: 4 VVIYCDGAARNNGKDNNVGGFGAVLRYGDHVKTIKAGFRNVTNNMMEIRAAIEALKQLKT 63
Query: 67 ANEKVKL 73
N V++
Sbjct: 64 TNIPVEI 70
>gi|71024413|ref|XP_762436.1| hypothetical protein UM06289.1 [Ustilago maydis 521]
gi|46097685|gb|EAK82918.1| hypothetical protein UM06289.1 [Ustilago maydis 521]
Length = 1122
Score = 39.3 bits (90), Expect = 0.84, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFG--ENNPLNVAGKVTG-RVTNNNAEIQGAIH 59
P V+ DG+ NG+ A AG+GV+F E + LN + ++ G + TNN AE+ I
Sbjct: 878 PQRTSTVYCDGSSIGNGRTTARAGWGVFFEDPELHHLNESRRLPGDKQTNNRAELMALIR 937
Query: 60 ALK 62
A++
Sbjct: 938 AVQ 940
>gi|308485824|ref|XP_003105110.1| CRE-DOG-1 protein [Caenorhabditis remanei]
gi|308257055|gb|EFP01008.1| CRE-DOG-1 protein [Caenorhabditis remanei]
Length = 1008
Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
VISVGIP+P+ D+ V K+SYND +++ GI
Sbjct: 878 VISVGIPYPNAMDDQVNAKKSYNDQNSKDLGI 909
>gi|297745566|emb|CBI40731.3| unnamed protein product [Vitis vinifera]
Length = 1218
Score = 39.3 bits (90), Expect = 0.89, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 73 LKRSYNDTHAQKKVRNVSSVAM---RIAQKVDYISHD---VISVGIPFPSIQDENVKLKR 126
LK Y + K + + +A+ ++++ +D+ + VI VGIPFP++ D V K+
Sbjct: 611 LKAYYESSQDNSKKKGAAFLAVFRGKVSEGIDFSDENARAVIIVGIPFPNVHDIQVAQKK 670
Query: 127 SYNDTHAQKKGI 138
YND + K +
Sbjct: 671 KYNDMYKSSKDL 682
>gi|384246051|gb|EIE19542.1| DNA repair helicase [Coccomyxa subellipsoidea C-169]
Length = 1621
Score = 39.3 bits (90), Expect = 0.90, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 15/93 (16%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + VI VGIPFP+++D V LK+ YND Q ++ +
Sbjct: 608 KVSEGLDFTDKNARAVIVVGIPFPNVKDTKVNLKKKYNDAG-----------QRDRSRSL 656
Query: 152 RSYNDTHAQKKVRNVSSVAMR-IAQKVDYKLLV 183
+ + ++Q+ R ++ R I K+DY +V
Sbjct: 657 LTGDQWYSQQAFRALNQAVGRCIRHKLDYGAIV 689
>gi|429124572|ref|ZP_19185104.1| ribonuclease H [Brachyspira hampsonii 30446]
gi|426279583|gb|EKV56605.1| ribonuclease H [Brachyspira hampsonii 30446]
Length = 163
Score = 38.9 bits (89), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M DN ++++TDG C N +GA A + N L + G+ TNN E++ AI A
Sbjct: 1 MTKDN-IIIYTDGGCRGNPGLGAWAAILISEKHNLRLEI-GESEDNTTNNRMEMKAAIKA 58
Query: 61 LKQAK 65
L++ K
Sbjct: 59 LERLK 63
>gi|363749577|ref|XP_003645006.1| hypothetical protein Ecym_2463 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888639|gb|AET38189.1| Hypothetical protein Ecym_2463 [Eremothecium cymbalariae
DBVPG#7215]
Length = 351
Score = 38.9 bits (89), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALK 62
VV+ DG NG AG GVYF L+++ T TNN AEI+ A AL+
Sbjct: 159 VVYCDGCALGNGTADCIAGIGVYFANEPALHLSEPCTEPPYTNNRAEIKAAFRALQ 214
>gi|401626232|gb|EJS44188.1| rnh1p [Saccharomyces arboricola H-6]
Length = 346
Score = 38.9 bits (89), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALK 62
D + V+ DG+ NG + AGYG YF N++ + +G TNN AEI+ ALK
Sbjct: 183 DKSMNVYCDGSSFGNGTSSSRAGYGAYFEGAPKENISEPLMSGAQTNNRAEIEAVSEALK 242
Query: 63 Q 63
+
Sbjct: 243 K 243
>gi|50556944|ref|XP_505880.1| YALI0F25729p [Yarrowia lipolytica]
gi|49651750|emb|CAG78691.1| YALI0F25729p [Yarrowia lipolytica CLIB122]
Length = 254
Score = 38.9 bits (89), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALK 62
V++T G C NG V + G G+ FG N N +G + G + T AE+ AL+
Sbjct: 86 VLYTSGVCDNNGYVNSKGGIGIVFGAPNICNFSGPLHGSKHTTQRAELAAVYQALR 141
>gi|123505191|ref|XP_001328927.1| helicase [Trichomonas vaginalis G3]
gi|121911876|gb|EAY16704.1| helicase, putative [Trichomonas vaginalis G3]
Length = 884
Score = 38.9 bits (89), Expect = 0.98, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQ 134
R ++ +D++ VI GIPFPS D +VKLK+ YND Q
Sbjct: 620 RSSEGIDFVDEQARAVIVFGIPFPSYYDIDVKLKKEYNDYKNQ 662
>gi|384208646|ref|YP_005594366.1| ribonuclease H [Brachyspira intermedia PWS/A]
gi|343386296|gb|AEM21786.1| ribonuclease H [Brachyspira intermedia PWS/A]
Length = 163
Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M DN ++++TDG C N +GA A + N L + G+ TNN E++ AI A
Sbjct: 1 MTKDN-IIIYTDGGCRGNPGLGAWAAILISERHNLRLEI-GESEDNTTNNRMEMKAAIKA 58
Query: 61 LKQAK 65
L++ K
Sbjct: 59 LERLK 63
>gi|296425451|ref|XP_002842255.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638516|emb|CAZ86446.1| unnamed protein product [Tuber melanosporum]
Length = 370
Score = 38.9 bits (89), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
+++ DG NG A AG GVY N LN+ + TN+ AE+ A+ AL+
Sbjct: 145 TLIYIDGTSINNGSPDAKAGCGVYRSPNELLNICRPLPVGTTNSRAELWAAVCALE 200
>gi|353244176|emb|CCA75615.1| hypothetical protein PIIN_09606, partial [Piriformospora indica DSM
11827]
Length = 717
Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
+++TDG+ RNG +G G++ + LN A K+TG+ +N AE+ AL+
Sbjct: 544 ILYTDGSTVRNGFENGESGLGIWHKNRSRLNTAMKITGKAHSNQRAELAAITQALR 599
>gi|302666316|ref|XP_003024759.1| hypothetical protein TRV_01108 [Trichophyton verrucosum HKI 0517]
gi|291188828|gb|EFE44148.1| hypothetical protein TRV_01108 [Trichophyton verrucosum HKI 0517]
Length = 435
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPL---------NVAGKVTG-RVTNNNA 52
P + ++TDG+ RNG A AG GVYFG ++ NV+ + G R TN A
Sbjct: 252 PPGMLKIYTDGSALRNGTSRARAGVGVYFGPDDESLFSSLSSSRNVSEPLAGSRQTNQRA 311
Query: 53 EIQGAIHAL 61
E+ AL
Sbjct: 312 ELTAISRAL 320
>gi|434381796|ref|YP_006703579.1| ribonuclease H [Brachyspira pilosicoli WesB]
gi|404430445|emb|CCG56491.1| ribonuclease H [Brachyspira pilosicoli WesB]
Length = 163
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVA-GKVTGRVTNNNAEIQGAIH 59
M DN + ++TDG C N +GA + E + L + G+ TNN E+Q AI
Sbjct: 1 MQKDN-ITIYTDGGCRGNPGIGAWGA--ILLSEKHNLRLEIGESEEHTTNNKMEMQAAIK 57
Query: 60 ALKQAK 65
AL++ K
Sbjct: 58 ALERLK 63
>gi|342880055|gb|EGU81266.1| hypothetical protein FOXB_08222 [Fusarium oxysporum Fo5176]
Length = 223
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQA 64
+ + DGAC NG A A GV+ GE + N + VTN AE+ I AL+QA
Sbjct: 68 IFIAVDGACRGNGTPDAKAAIGVFVGETSSFNRCLLLRQVPVTNQIAELNAGIVALEQA 126
>gi|67470878|ref|XP_651401.1| DNA repair helicase [Entamoeba histolytica HM-1:IMSS]
gi|56468131|gb|EAL46015.1| DNA repair helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710566|gb|EMD49619.1| regulator of telomere elongation helicase rtel1, putative
[Entamoeba histolytica KU27]
Length = 1033
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 67 ANEKVKLKRSYNDTHAQKKVRNVSSVAMR--IAQKVDY---ISHDVISVGIPFPSIQDEN 121
+ +K + K+ + + Q K V R +++ +D+ ++ VI VGIP+PS+ D N
Sbjct: 618 SKDKSEFKKDFKEYQIQSKKGAVFLGVFRGKLSEGIDFGDDMARLVIVVGIPYPSLGDIN 677
Query: 122 VKLKRSYN 129
V LKR YN
Sbjct: 678 VNLKREYN 685
>gi|50548363|ref|XP_501651.1| YALI0C09658p [Yarrowia lipolytica]
gi|49647518|emb|CAG81956.1| YALI0C09658p [Yarrowia lipolytica CLIB122]
Length = 256
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
+ ++ +G C NG A AGY + FG +P NV+ ++ G T A++ H
Sbjct: 1 MSIYCEGLCRNNGTKFAKAGYAIVFGLQDPRNVSMRLDGAQTTQRADLAAISH 53
>gi|341892277|gb|EGT48212.1| hypothetical protein CAEBREN_06927 [Caenorhabditis brenneri]
Length = 161
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQAKSA 67
++TDG+ NGK GA GYGV + + +G T G TNN E++ A + A+
Sbjct: 7 IYTDGSAVNNGKPGARGGYGVVCESDRSRDTSGSFTHGNQTNNRYELEAIKKATEIARDV 66
Query: 68 NEK 70
N +
Sbjct: 67 NHR 69
>gi|393908189|gb|EJD74948.1| CBR-DOG-1 protein [Loa loa]
Length = 979
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 95 RIAQKVDYI---SHDVISVGIPFPSIQDENVKLKRSYNDTHAQK 135
++++ +D+ + V++VGIPFPS DE V K+ YND + K
Sbjct: 831 KVSEGIDFTDDRARCVVTVGIPFPSAMDEQVVEKKKYNDDYCTK 874
>gi|343428927|emb|CBQ72472.1| related to Ribonuclease H [Sporisorium reilianum SRZ2]
Length = 338
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNP--LNVAGKVTGRV-TNNNAEIQGAIHALK 62
VV+ DG+ NGK A AG+GV+F + + LN + ++ G TNN AE+ I A++
Sbjct: 147 VVYCDGSSIGNGKSNARAGWGVFFEDPDLHHLNESRRLPGAAQTNNRAELMAIIRAIQ 204
>gi|407037674|gb|EKE38739.1| DNA repair helicase, putative [Entamoeba nuttalli P19]
Length = 1034
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 67 ANEKVKLKRSYNDTHAQKKVRNVSSVAMR--IAQKVDY---ISHDVISVGIPFPSIQDEN 121
+ +K + K+ + + Q K V R +++ +D+ ++ VI VGIP+PS+ D N
Sbjct: 619 SKDKNEFKKDFKEYQIQSKKGAVFLGVFRGKLSEGIDFGDDMARLVIVVGIPYPSLGDIN 678
Query: 122 VKLKRSYND 130
V LKR YN+
Sbjct: 679 VNLKREYNN 687
>gi|423112184|ref|ZP_17099877.1| hypothetical protein HMPREF9687_05428 [Klebsiella oxytoca 10-5243]
gi|376374977|gb|EHS87776.1| hypothetical protein HMPREF9687_05428 [Klebsiella oxytoca 10-5243]
Length = 202
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V VF+DG+C +N G GYG+ Y GE L+ T TNN E+ GA+ AL++
Sbjct: 45 VKVFSDGSCLKN--PGGPGGYGIVLQYRGEERELSEGFHST---TNNRMEMMGALIALER 99
Query: 64 AK 65
K
Sbjct: 100 LK 101
>gi|365758908|gb|EHN00729.1| Rnh1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 249
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALK 62
D + V+ DG+ NG + AGYG YF N++ + +G TNN AEI+ ALK
Sbjct: 186 DKSMNVYCDGSSFGNGTSSSRAGYGAYFEGAPEENISEPLMSGAQTNNRAEIEAVSEALK 245
Query: 63 Q 63
+
Sbjct: 246 E 246
>gi|241638389|ref|XP_002409109.1| hypothetical protein IscW_ISCW019247 [Ixodes scapularis]
gi|215501299|gb|EEC10793.1| hypothetical protein IscW_ISCW019247 [Ixodes scapularis]
Length = 805
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 101 DYISHDVISVGIPFPSIQDENVKLKRSYNDTHAQKKGIP 139
D + V++VGIPFP+++D V KR YND K G P
Sbjct: 437 DNTARAVVTVGIPFPNVKDIQVDQKRKYND-QCSKSGRP 474
>gi|385306041|gb|EIF49978.1| ribonuclease h1 [Dekkera bruxellensis AWRI1499]
Length = 282
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 9 VFTDGACPRNGKVGAS-AGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
V+TDGA N S AGYGV+FG N+ NVA + G + +N AEI G A+
Sbjct: 128 VYTDGASKNNQDQSKSVAGYGVFFGHNDSRNVAAPLRGNKQSNQRAEIMGVDTAV 182
>gi|334126350|ref|ZP_08500328.1| ribonuclease H [Enterobacter hormaechei ATCC 49162]
gi|333385579|gb|EGK56808.1| ribonuclease H [Enterobacter hormaechei ATCC 49162]
Length = 202
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V VF+DG+C +N G GYG+ Y GE L+ T TNN E+ GA+ AL++
Sbjct: 45 VKVFSDGSCLKN--PGGPGGYGIVLQYRGEERELSEGFHST---TNNRMEMMGALIALER 99
Query: 64 AK 65
K
Sbjct: 100 LK 101
>gi|406914998|gb|EKD54127.1| Ribonuclease H [uncultured bacterium]
Length = 145
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
HV++FTDGAC N G G+GV +G++ + ++ + TNN E+ AI AL
Sbjct: 3 HVIIFTDGACRGNPGPG---GWGVLLRYGKHEKTFLGAEL--KTTNNRMELMAAIKAL 55
>gi|18466774|ref|NP_569581.1| putative ribonuclease H [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16506090|emb|CAD09976.1| putative ribonuclease H [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
Length = 202
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V VF+DG+C +N G GYG+ Y GE L+ T TNN E+ GA+ AL++
Sbjct: 45 VKVFSDGSCLKN--PGGPGGYGIVLQYRGEERELSEGFHST---TNNRMEMMGALIALER 99
Query: 64 AK 65
K
Sbjct: 100 LK 101
>gi|308510450|ref|XP_003117408.1| hypothetical protein CRE_02238 [Caenorhabditis remanei]
gi|308242322|gb|EFO86274.1| hypothetical protein CRE_02238 [Caenorhabditis remanei]
Length = 510
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D + +V G+C +G+ A AGYGVY+G+ + N G V G ++ A ALK
Sbjct: 112 DGYRIVDIYGSC-NDGQSNALAGYGVYWGDGDVRNECGGVVGLQSSYRAIFTALYRALKT 170
Query: 64 AKSANEKVKLKRS 76
A SA+ + RS
Sbjct: 171 ALSASYDEIIIRS 183
>gi|418300150|ref|ZP_12911978.1| ribonuclease H [Agrobacterium tumefaciens CCNWGS0286]
gi|355534092|gb|EHH03406.1| ribonuclease H [Agrobacterium tumefaciens CCNWGS0286]
Length = 146
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + +GE G+ TNN E+ GAI AL
Sbjct: 3 HVDIFTDGACSGNPGPG---GWGAVLRYGEVEKELSGGEA--ETTNNRMELMGAISALNA 57
Query: 64 AKSANE 69
KS E
Sbjct: 58 LKSPCE 63
>gi|68171356|ref|ZP_00544752.1| RNase H [Ehrlichia chaffeensis str. Sapulpa]
gi|88657670|ref|YP_507084.1| ribonuclease HI [Ehrlichia chaffeensis str. Arkansas]
gi|123722801|sp|Q2GHJ9.1|RNH_EHRCR RecName: Full=Ribonuclease H; Short=RNase H
gi|67999227|gb|EAM85881.1| RNase H [Ehrlichia chaffeensis str. Sapulpa]
gi|88599127|gb|ABD44596.1| ribonuclease HI [Ehrlichia chaffeensis str. Arkansas]
Length = 146
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D N VV++TDGAC N G A V ++N + G TNN E+ I AL
Sbjct: 3 DELNKVVIYTDGACSGNPGPGGWA--AVLLFDDNEKTICGN-DSDTTNNRMELTAVIEAL 59
Query: 62 KQAKSA 67
K K A
Sbjct: 60 KLLKVA 65
>gi|449455726|ref|XP_004145602.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
homolog [Cucumis sativus]
Length = 1042
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 17/93 (18%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + VI VGIPFP I V LK+ +ND + K +
Sbjct: 666 KVSEGIDFSDDNARVVIIVGIPFPDINGIQVALKKKFNDKYKMSKNL------------- 712
Query: 152 RSYNDTHAQKKVRNVSSVAMR-IAQKVDYKLLV 183
S N+ + Q+ R ++ A R I K DY +V
Sbjct: 713 LSGNEWYCQQAFRALNQAAGRCIRHKFDYGAIV 745
>gi|392565150|gb|EIW58327.1| hypothetical protein TRAVEDRAFT_124116, partial [Trametes
versicolor FP-101664 SS1]
Length = 304
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV--TGRVTNNNAEIQGAIHA 60
+ TDG+C +NG A AG GVY + N+A ++ T TN AE+ + A
Sbjct: 245 TIGTDGSCSQNGDANARAGAGVYVAAESTENIAMRLPRTMLQTNQTAEMTATLLA 299
>gi|339240165|ref|XP_003376008.1| fanconi anemia group J protein-like protein [Trichinella spiralis]
gi|316975301|gb|EFV58747.1| fanconi anemia group J protein-like protein [Trichinella spiralis]
Length = 822
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 30/40 (75%), Gaps = 3/40 (7%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDT 131
+I++ +D+ + VI+VGIPFP++++ V+LK+ YN+T
Sbjct: 666 KISEGIDFSDNSARAVIAVGIPFPNLKNIQVQLKKQYNNT 705
>gi|258546178|ref|ZP_05706412.1| ribonuclease HI [Cardiobacterium hominis ATCC 15826]
gi|258518603|gb|EEV87462.1| ribonuclease HI [Cardiobacterium hominis ATCC 15826]
Length = 148
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 9/64 (14%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY--FGENN-PLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
++++TDGAC N +G G+GV +GE+ LN A +T TNN E+ AI AL+
Sbjct: 5 LLIYTDGACKGNPGIG---GWGVLMCYGEHRKTLNGAEAMT---TNNRMELTAAIEALRA 58
Query: 64 AKSA 67
K A
Sbjct: 59 VKRA 62
>gi|296113099|ref|YP_003627037.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
gi|416158113|ref|ZP_11605552.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis
101P30B1]
gi|416217726|ref|ZP_11624459.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169]
gi|416225073|ref|ZP_11626813.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis
103P14B1]
gi|416230940|ref|ZP_11628598.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis
46P47B1]
gi|416235518|ref|ZP_11630194.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis
12P80B1]
gi|416240473|ref|ZP_11632444.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1]
gi|416242545|ref|ZP_11633581.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7]
gi|416246634|ref|ZP_11635092.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8]
gi|416249509|ref|ZP_11636606.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72]
gi|416254841|ref|ZP_11638943.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E]
gi|421779925|ref|ZP_16216415.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
gi|295920793|gb|ADG61144.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BBH18]
gi|326560092|gb|EGE10482.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis
46P47B1]
gi|326560475|gb|EGE10857.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169]
gi|326561678|gb|EGE12015.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis
103P14B1]
gi|326564194|gb|EGE14430.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis
12P80B1]
gi|326565793|gb|EGE15955.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1]
gi|326570446|gb|EGE20486.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8]
gi|326571129|gb|EGE21153.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7]
gi|326573423|gb|EGE23391.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis
101P30B1]
gi|326575681|gb|EGE25604.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72]
gi|326577147|gb|EGE27041.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E]
gi|407812719|gb|EKF83503.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
Length = 432
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 8 VVFTDGACPRNGKVGASA-GYGVYF----GENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
+ +TDGAC NGK G SA G+GVY G+ L T TNN E+ AI AL+
Sbjct: 6 IAYTDGACKGNGKQGVSAGGWGVYLHYFNGDERHLWGGEPDT---TNNRMELMAAITALE 62
>gi|427737956|ref|YP_007057500.1| ribonuclease HI [Rivularia sp. PCC 7116]
gi|427372997|gb|AFY56953.1| ribonuclease HI [Rivularia sp. PCC 7116]
Length = 306
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++TDGAC N G G+GV YF ++ ++ G + + TNN E+Q AI AL+ +S
Sbjct: 10 IYTDGACTGNPGPG---GWGVVVYF-DDGSIHEIGDASKKTTNNRMEMQAAIAALEFLES 65
Query: 67 ANE 69
+ +
Sbjct: 66 SGQ 68
>gi|170579413|ref|XP_001894820.1| BRCA1-binding helicase-like protein BACH1 [Brugia malayi]
gi|158598443|gb|EDP36331.1| BRCA1-binding helicase-like protein BACH1, putative [Brugia malayi]
Length = 962
Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 95 RIAQKVDYI---SHDVISVGIPFPSIQDENVKLKRSYNDTHAQK 135
+I++ +D+ + V++VGIPFPS DE V K+ YND + K
Sbjct: 832 KISEGIDFTDDRARCVVTVGIPFPSAVDEQVIEKKKYNDDYCTK 875
>gi|378975808|ref|YP_005220925.1| putative ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|365803804|gb|AEW92026.1| putative ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
Length = 222
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V VF+DG+C +N G GYG+ Y GE L+ T TNN E+ GA+ AL++
Sbjct: 65 VKVFSDGSCLKN--PGGPGGYGIVLQYRGEERELSEGFHST---TNNRMEMMGALIALER 119
Query: 64 AK 65
K
Sbjct: 120 LK 121
>gi|159472757|ref|XP_001694511.1| ATP-dependent DNA helicase [Chlamydomonas reinhardtii]
gi|158276735|gb|EDP02506.1| ATP-dependent DNA helicase [Chlamydomonas reinhardtii]
Length = 897
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Query: 128 YNDTHAQKK---GIPFPSIQDEKVKLKRSYND 156
+ D HA+ GIPFP+++D KV+LK+ YND
Sbjct: 579 FADQHARGVILLGIPFPAVKDTKVRLKKEYND 610
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 101 DYISHDVISVGIPFPSIQDENVKLKRSYND 130
D + VI +GIPFP+++D V+LK+ YND
Sbjct: 581 DQHARGVILLGIPFPAVKDTKVRLKKEYND 610
>gi|145349251|ref|XP_001419051.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579282|gb|ABO97344.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1067
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 74 KRSYNDTHAQKKVRNVSSVAM---RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRS 127
K Y A K R A+ +I++ +D+ + VI VGIP+P+I+D V KRS
Sbjct: 640 KHPYAPAPANAKCRGAILFAVCRGKISEGIDFADANARAVICVGIPYPNIKDALVAAKRS 699
Query: 128 YNDTHAQK 135
YN+ A +
Sbjct: 700 YNEEGAHR 707
>gi|407926685|gb|EKG19649.1| hypothetical protein MPH_03081 [Macrophomina phaseolina MS6]
Length = 369
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
+ TDG+ NGK G+ AG GV+FG + NV+ + G R TN AE+ AL
Sbjct: 216 ICTDGSALGNGKKGSVAGVGVFFGPLDKRNVSEGLAGARQTNQRAELTAIQRAL 269
>gi|430002466|emb|CCF18247.1| Ribonuclease H (RNase H) [Rhizobium sp.]
Length = 146
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + +GE G+ + TNN E+ AI AL
Sbjct: 3 HVEIFTDGACSGNPGPG---GWGAILRYGETEKEMSGGEA--QTTNNRMELMAAIQALNA 57
Query: 64 AKSANE 69
K+ E
Sbjct: 58 LKTPCE 63
>gi|1890639|gb|AAC57052.1| pol protein [Simian immunodeficiency virus - agm.tan-1]
Length = 1067
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V + DGAC RN K+G AG+ GE+ + + TN AE+Q + ALK +KS
Sbjct: 661 VYYCDGACNRNSKLG-KAGFLTNTGESQVIELED-----TTNQQAELQAVLLALKHSKS 713
>gi|393228117|gb|EJD35772.1| hypothetical protein AURDEDRAFT_34824, partial [Auricularia
delicata TFB-10046 SS5]
Length = 115
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 25 AGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
AG G+Y+G NNP N +G+V G T AE+ + A+++A
Sbjct: 1 AGIGIYWGPNNPGNSSGRVPGPNTRERAELFAILMAVQRA 40
>gi|220908688|ref|YP_002483999.1| Ribonuclease H [Cyanothece sp. PCC 7425]
gi|259494077|sp|B8HPS9.1|RNH_CYAP4 RecName: Full=Ribonuclease H; Short=RNase H
gi|219865299|gb|ACL45638.1| Ribonuclease H [Cyanothece sp. PCC 7425]
Length = 157
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++TDGAC N G G+GV YFG+ + ++ G TNN E+Q AI AL+ ++
Sbjct: 8 IYTDGACSGNPGPG---GWGVVVYFGDGS-VHEMGGAAAATTNNRMEMQAAIAALEFCQA 63
Query: 67 A 67
A
Sbjct: 64 A 64
>gi|410491500|ref|YP_006906722.1| putative ribonuclease H [Salmonella phage SSU5]
gi|390013925|gb|AFL47017.1| putative ribonuclease H [Salmonella phage SSU5]
Length = 254
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V VF+DG+C +N G GYG+ Y GE L+ T TNN E+ GA+ AL++
Sbjct: 97 VKVFSDGSCLKN--PGGPGGYGIVLQYRGEERELSEGFHST---TNNRMEMMGALIALER 151
Query: 64 AK 65
K
Sbjct: 152 LK 153
>gi|449519585|ref|XP_004166815.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
homolog [Cucumis sativus]
Length = 1041
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 17/93 (18%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + VI VGIPFP I V LK+ +ND + K +
Sbjct: 665 KVSEGIDFSDDNARVVIIVGIPFPDINGIQVALKKKFNDKYKMSKNL------------- 711
Query: 152 RSYNDTHAQKKVRNVSSVAMR-IAQKVDYKLLV 183
S N+ + Q+ R ++ A R I K DY +V
Sbjct: 712 LSGNEWYCQQAFRALNQAAGRCIRHKFDYGAIV 744
>gi|407915585|gb|EKG09153.1| hypothetical protein MPH_13854 [Macrophomina phaseolina MS6]
Length = 171
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLN 38
D+ VV++ DGAC NG A A YGVY G ++ N
Sbjct: 10 DSTVVIYIDGACQGNGTPSAKASYGVYAGPSSRYN 44
>gi|392308828|ref|ZP_10271362.1| ribonuclease HI [Pseudoalteromonas citrea NCIMB 1889]
Length = 257
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 7 VVVFTDGAC-PRNGKVGASAGYGVYFGENNPLNVA--GKVTGRVTNNNAEIQGAIHALKQ 63
+ VFTDG C P G+ G G VY ENN L+ G TNN AE+ G AL
Sbjct: 89 IKVFTDGGCEPNPGEAGT--GLAVY--ENNSLSALWYGLYQANGTNNTAELNGLTQALIL 144
Query: 64 AKS 66
AKS
Sbjct: 145 AKS 147
>gi|212539532|ref|XP_002149921.1| ribonuclease H1, putative [Talaromyces marneffei ATCC 18224]
gi|210067220|gb|EEA21312.1| ribonuclease H1, putative [Talaromyces marneffei ATCC 18224]
Length = 222
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQA 64
+++ DGAC NG A A GVYFG+ + N + ++ TN AE+ +AL++A
Sbjct: 58 IIIAVDGACRHNGTSEAQAAIGVYFGKQSLNNRSVRLNIDNPTNQIAELTAGFYALRRA 116
>gi|440683156|ref|YP_007157951.1| Ribonuclease H [Anabaena cylindrica PCC 7122]
gi|428680275|gb|AFZ59041.1| Ribonuclease H [Anabaena cylindrica PCC 7122]
Length = 302
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
++TDGAC N G G+GV YF ++ ++ G + TNN E+Q AI AL+
Sbjct: 10 IYTDGACTGNPGPG---GWGVVVYF-QDGSIHEMGDASSHTTNNKMEMQAAIAALE 61
>gi|114706694|ref|ZP_01439595.1| ribonuclease H [Fulvimarina pelagi HTCC2506]
gi|114538086|gb|EAU41209.1| ribonuclease H [Fulvimarina pelagi HTCC2506]
Length = 153
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAI 58
M +N V ++TDGAC N G G+GV FGE++ G+ TNN E+ AI
Sbjct: 1 MSKENRVEIYTDGACSGNPGPG---GWGVLLRFGEHSKELKGGEAN--TTNNRMELLAAI 55
Query: 59 HALKQAK 65
AL K
Sbjct: 56 EALSALK 62
>gi|397905928|ref|ZP_10506761.1| Ribonuclease HI [Caloramator australicus RC3]
gi|397161031|emb|CCJ34096.1| Ribonuclease HI [Caloramator australicus RC3]
Length = 152
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V+++TDG C NG GYG + + K + TNN E+ AI AL K
Sbjct: 4 EVIIYTDGGCRGNGNEETVGGYGAVLIYKDKIKTIKKGFKKTTNNIMELTAAIDALSLLK 63
Query: 66 SANEKVKL 73
KVKL
Sbjct: 64 EPC-KVKL 70
>gi|324502086|gb|ADY40918.1| Fanconi anemia group J protein [Ascaris suum]
Length = 962
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYI---SHDVISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ + V+SVGIPFP+ DE V K+ +ND + +K I
Sbjct: 820 KVSEGIDFADDRARCVVSVGIPFPNAMDEQVSEKKKFNDDNCKKMRI 866
>gi|282896288|ref|ZP_06304310.1| Ribonuclease H [Raphidiopsis brookii D9]
gi|281198784|gb|EFA73663.1| Ribonuclease H [Raphidiopsis brookii D9]
Length = 309
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
++TDGAC N G G+GV YF + ++ G+ + TNN EIQ AI AL+
Sbjct: 10 IYTDGACKGNPGPG---GWGVVAYF-HDGSIHEMGEASDHTTNNQMEIQAAIAALQ 61
>gi|378756742|gb|EHY66766.1| hypothetical protein NERG_00406 [Nematocida sp. 1 ERTm2]
Length = 690
Score = 38.1 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 101 DYISHDVISVGIPFPSIQDENVKLKRSYNDTHAQKKG 137
D+ S VI VGIP+P+I++ +V LK+ YND + G
Sbjct: 545 DHESRAVILVGIPYPNIRNHSVILKKQYNDRYLNSTG 581
>gi|348679768|gb|EGZ19584.1| RNase H-like protein [Phytophthora sojae]
Length = 228
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHAL 61
PD+ +V F DG+ NG+ A Y F N +V V G T+N AE A+ A
Sbjct: 91 PDS-LVAFCDGSAMDNGQYNCHAAYACIFPHNRSWDVVETVKGPFATSNRAEYLAALEAF 149
Query: 62 KQAKSANEKVK 72
K+A + K +
Sbjct: 150 KRANIEDPKCQ 160
>gi|427732430|ref|YP_007078667.1| ribonuclease HI [Nostoc sp. PCC 7524]
gi|427368349|gb|AFY51070.1| ribonuclease HI [Nostoc sp. PCC 7524]
Length = 302
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK--QA 64
++TDGAC N G G+GV YF + + ++ G TNN E+Q AI ALK A
Sbjct: 10 IYTDGACTGNPGPG---GWGVVVYFNDGS-IHEMGDAASHTTNNKMEMQAAIAALKYFHA 65
Query: 65 KSANEKVKLKRSYNDT 80
E + L Y D+
Sbjct: 66 ARQTEPITL---YTDS 78
>gi|253577623|ref|ZP_04854933.1| ribonuclease HI [Paenibacillus sp. oral taxon 786 str. D14]
gi|251842993|gb|EES71031.1| ribonuclease HI [Paenibacillus sp. oral taxon 786 str. D14]
Length = 146
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V ++TDGAC N G ++ G L+ K+T TNN EIQ I AL Q K
Sbjct: 3 EVTIYTDGACSGNPGPGGWGAVLMFNGHRKDLSGGEKMT---TNNRMEIQAVISALSQLK 59
>gi|308510618|ref|XP_003117492.1| hypothetical protein CRE_02237 [Caenorhabditis remanei]
gi|308242406|gb|EFO86358.1| hypothetical protein CRE_02237 [Caenorhabditis remanei]
Length = 606
Score = 38.1 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 25 AGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANEKVKLKRSYNDT 80
AGYGV++ N+P N +G GR N A AL A ++N + R+ +DT
Sbjct: 204 AGYGVFWDYNDPRNRSGICGGRANTNQAYFTALYFALLTAHTSNHDEIIIRTRSDT 259
>gi|384172790|ref|YP_005554167.1| ribonuclease HI [Arcobacter sp. L]
gi|345472400|dbj|BAK73850.1| ribonuclease HI [Arcobacter sp. L]
Length = 273
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 2 DPDNHVVVFTDGACPRN-GKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+ + H+ ++ DGAC N G G+ G +Y + NP+ + G TNN AE+ A
Sbjct: 102 NEEEHIRIYCDGACSGNPGNAGS--GLAIYSNKKNPVLLYGAYEEEGTNNIAELNALFQA 159
Query: 61 LKQA 64
L A
Sbjct: 160 LTIA 163
>gi|310789359|gb|EFQ24892.1| hypothetical protein GLRG_00036 [Glomerella graminicola M1.001]
Length = 266
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
D+ +++TDGAC NG A G F N +G R T+N AE++ I AL+
Sbjct: 104 DSEFLIYTDGACSDNGAADARGGCAFVFKPNGLNGQSGSY--RHTSNRAELRAVIAALR 160
>gi|190344330|gb|EDK35986.2| hypothetical protein PGUG_00084 [Meyerozyma guilliermondii ATCC
6260]
Length = 264
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVA-----GKVTGRVTNNNAEIQGAIHALK- 62
+F DGA G GYGV++G+++P N A K + N AE++ IH +
Sbjct: 61 IFIDGAFQ-----GDQCGYGVWYGDDDPRNAAVPLFQAKEELPLNNQRAELRAMIHVFRN 115
Query: 63 --QAKSANEKVKLKRS--YNDTHAQKKVRNVSSVAMR 95
Q +N + LK D+ A K + SV +
Sbjct: 116 IQQEIESNNGIPLKEYVILTDSQATIKALTIWSVKWK 152
>gi|345302744|ref|YP_004824646.1| ribonuclease H [Rhodothermus marinus SG0.5JP17-172]
gi|345111977|gb|AEN72809.1| Ribonuclease H [Rhodothermus marinus SG0.5JP17-172]
Length = 162
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P HVV++TDGAC N G G+ N V TNN E+ I AL+
Sbjct: 4 PRKHVVIYTDGACSGNPGPG---GWAAILRYNQHEKVLQGAEAHTTNNRMELTAVIEALR 60
Query: 63 QAKS 66
K
Sbjct: 61 ALKE 64
>gi|406882482|gb|EKD30269.1| ribonuclease H [uncultured bacterium (gcode 4)]
Length = 135
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENN--PLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
++TDG N AG GV+ + N PL K G TNN AE QGA+H +++
Sbjct: 5 IYTDGGARNNP---GPAGIGVFITDENGKPLERRHKYLGIATNNQAEYQGALHGIRRG 59
>gi|297560924|ref|YP_003679898.1| ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296845372|gb|ADH67392.1| ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 160
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
+P VV++TDGAC N G G+GV+ +G + G+ + TNN E+ AI
Sbjct: 13 EPTQRVVIYTDGACSGNPGPG---GWGVWLRYGGHEKELYGGEA--QTTNNRMELMAAIR 67
Query: 60 ALKQAK 65
AL+ +
Sbjct: 68 ALESLR 73
>gi|334339767|ref|YP_004544747.1| Ribonuclease H [Desulfotomaculum ruminis DSM 2154]
gi|334091121|gb|AEG59461.1| Ribonuclease H [Desulfotomaculum ruminis DSM 2154]
Length = 156
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D V+++TDGAC N G +Y G L+ + T TNN EI AI +L+
Sbjct: 3 DKEVIIYTDGACSGNPGPGGYGAVMLYQGHRRELSAGFRDT---TNNRMEIMAAIASLEA 59
Query: 64 AK 65
K
Sbjct: 60 LK 61
>gi|310793466|gb|EFQ28927.1| hypothetical protein GLRG_04071 [Glomerella graminicola M1.001]
Length = 327
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENN------PLNVAGKVTGRV---TNNNA 52
D D V+VF DGAC NG A G G F PL G V G + T+N A
Sbjct: 151 DNDGEVLVFVDGACSGNGTTVAVGGCGFVFNSQEGGSVRFPLEGLG-VDGELYPMTSNRA 209
Query: 53 EIQGAIHALKQAKSANEKVK 72
E++ A+ AL E V+
Sbjct: 210 ELRAALGALSFRTWHGEGVE 229
>gi|225710774|gb|ACO11233.1| Ribonuclease H1 [Caligus rogercresseyi]
Length = 291
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQG--- 56
M+ D V VFTDGAC NG+ GAS G G++F +N+ N + + R TNN AE+
Sbjct: 136 MNKDGWVKVFTDGACIHNGRGGASGGIGIFFWKNSHKNTSEPLIDLRQTNNVAELTAISR 195
Query: 57 AIHALK 62
AIH +K
Sbjct: 196 AIHIVK 201
>gi|152995730|ref|YP_001340565.1| ribonuclease H [Marinomonas sp. MWYL1]
gi|150836654|gb|ABR70630.1| Ribonuclease H [Marinomonas sp. MWYL1]
Length = 142
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 9 VFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++TDGAC N +G G+G + FGE+ G+ TNN E+ GAI L+ K
Sbjct: 1 MYTDGACKGNPGIG---GWGAWLTFGEHEKHLCGGEHD--TTNNRMELMGAIEGLRALK- 54
Query: 67 ANEKVKLKRSYNDTHAQKKV 86
EK + + ++ QK +
Sbjct: 55 --EKCSVTLYTDSSYVQKGI 72
>gi|86356609|ref|YP_468501.1| ribonuclease H [Rhizobium etli CFN 42]
gi|123765846|sp|Q2KBL2.1|RNH_RHIEC RecName: Full=Ribonuclease H; Short=RNase H
gi|86280711|gb|ABC89774.1| ribonuclease H protein [Rhizobium etli CFN 42]
Length = 151
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + +GE G+ TNN E+ AI AL+
Sbjct: 3 HVDIFTDGACSGNPGPG---GWGAVLRYGEVEKELCGGEA--ETTNNRMELMAAISALQA 57
Query: 64 AKSANE 69
KS E
Sbjct: 58 LKSPCE 63
>gi|400286595|ref|ZP_10788627.1| DNA polymerase III subunit epsilon [Psychrobacter sp. PAMC 21119]
gi|400288072|ref|ZP_10790104.1| DNA polymerase III subunit epsilon [Psychrobacter sp. PAMC 21119]
Length = 533
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
N V +TDGAC N G G+G + F + + ++ G T TNN E+ GAI AL
Sbjct: 25 NTTVAYTDGACKGNPGAG---GWGAHLIFSDGHTQDLYGG-TKETTNNRMELMGAIQALT 80
Query: 63 QA 64
+
Sbjct: 81 HS 82
>gi|445065049|ref|ZP_21376951.1| ribonuclease H [Brachyspira hampsonii 30599]
gi|444503565|gb|ELV04425.1| ribonuclease H [Brachyspira hampsonii 30599]
Length = 163
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
++++TDG C N +GA A + N L + G+ TNN E++ AI AL++ K
Sbjct: 6 IIIYTDGGCRGNPGLGAWAAILISEKHNLRLEI-GESEDNTTNNRMEMKAAIKALERLK 63
>gi|291279864|ref|YP_003496699.1| ribonuclease HI [Deferribacter desulfuricans SSM1]
gi|290754566|dbj|BAI80943.1| ribonuclease HI [Deferribacter desulfuricans SSM1]
Length = 141
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 9 VFTDGACPRN-GKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
+FTDGAC N G G G+ +Y ++N + + G TNN AE I AL+ K
Sbjct: 8 IFTDGACSGNPGPAG--IGFVIYDEDDNVIKECSEYLGEATNNIAEYTALIKALESIK 63
>gi|342885615|gb|EGU85602.1| hypothetical protein FOXB_03891 [Fusarium oxysporum Fo5176]
Length = 233
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGE---------NNPLNVAGKVT--GRVTNN 50
DP + ++ TDGAC NG+V AG+ FG N L G + G TNN
Sbjct: 136 DPKSFLIC-TDGACLGNGQVEPKAGWTSVFGPLEQNTNASVNERLEHQGPLGGFGNPTNN 194
Query: 51 NAEIQGAIHALKQAKSANE 69
AE++ I AL+ A+E
Sbjct: 195 RAELRAIIGALRYRNWASE 213
>gi|427707770|ref|YP_007050147.1| ribonuclease H [Nostoc sp. PCC 7107]
gi|427360275|gb|AFY42997.1| Ribonuclease H [Nostoc sp. PCC 7107]
Length = 302
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
++TDGAC N G G+GV YF + + + G TNN E+Q AI ALK
Sbjct: 10 IYTDGACTGNPGPG---GWGVVVYFNDGSVHEI-GDAASHTTNNKMEMQAAIAALK 61
>gi|390605194|gb|EIN14585.1| ribonuclease H-like protein, partial [Punctularia strigosozonata
HHB-11173 SS5]
Length = 152
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
+ V DG+C + ASAG GV++ NV+ +V G+ TNN AE+ + L
Sbjct: 20 ITVHIDGSCVKTPY--ASAGAGVFWARGAAKNVSARVPGKQTNNRAELYAVLLCL 72
>gi|282901341|ref|ZP_06309266.1| Ribonuclease H [Cylindrospermopsis raciborskii CS-505]
gi|281193620|gb|EFA68592.1| Ribonuclease H [Cylindrospermopsis raciborskii CS-505]
Length = 306
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
++TDGAC N G G+GV YF + ++ G+ + TNN EIQ AI AL+
Sbjct: 10 IYTDGACKGNPGPG---GWGVVVYF-HDGSIHEMGEASDYTTNNQMEIQAAIGALE 61
>gi|393239778|gb|EJD47307.1| ribonuclease H-like protein, partial [Auricularia delicata
TFB-10046 SS5]
Length = 153
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 4 DNHVVVFTDGACPR-NGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
++ V V TDG+C + A AG GV +G N + +V GR T+ AE+ HA+K
Sbjct: 14 EDQVYVHTDGSCSDPTVRARARAGSGVCWGLGCKRNASYRVPGRQTSPRAELYAVGHAVK 73
Query: 63 QAKSA 67
A SA
Sbjct: 74 GAPSA 78
>gi|341883785|gb|EGT39720.1| hypothetical protein CAEBREN_25454 [Caenorhabditis brenneri]
Length = 810
Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 95 RIAQKVDYI---SHDVISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ S VI VGIP+P I DE V LK+ Y D +K +K +
Sbjct: 645 KVSEGIDFCDAESRAVIIVGIPYPPIHDERVVLKKMYLDDLMGRK---------DKTHER 695
Query: 152 RSYNDTHAQKKVRNVSSVAMRIAQ-KVDYKLLV 183
+S D + + R V+ R+ + K D+ +V
Sbjct: 696 QSSQDWYQMEAFRAVNQAIGRVLRHKNDFGTVV 728
>gi|354542897|emb|CCE39615.1| hypothetical protein CPAR2_600280 [Candida parapsilosis]
Length = 274
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 9 VFTDGACPRNGKV-GASAGYGVYFGENNPLNVA---------GKVTGRVTNNNAEIQGAI 58
V+ DGA NG+ A++GYGVY+G N+ N A K T TN AE+ G
Sbjct: 104 VYVDGASRGNGQSKSAASGYGVYYGPNDSRNAAVGLHEVDNINKYT--PTNQRAELHGMK 161
Query: 59 HALKQAKS 66
HAL K+
Sbjct: 162 HALTNIKN 169
>gi|50543600|ref|XP_499966.1| YALI0A10989p [Yarrowia lipolytica]
gi|49645831|emb|CAG83895.1| YALI0A10989p [Yarrowia lipolytica CLIB122]
Length = 606
Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNN-NAEIQGAIHALK 62
VF+DG+ + G+GV+FG +P NVAG +TG + + E++G + A K
Sbjct: 420 VFSDGSSKVDSDGKQWGGFGVWFGHYHPDNVAGPLTGDLQDPLQGELRGLLEAYK 474
>gi|392571804|gb|EIW64976.1| RNase H, partial [Trametes versicolor FP-101664 SS1]
Length = 259
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV 43
V+TDG+ NG A AG G++FGE +P N +V
Sbjct: 192 VYTDGSAHGNGSESARAGSGIWFGEGDPRNEGARV 226
>gi|392567376|gb|EIW60551.1| RNase H, partial [Trametes versicolor FP-101664 SS1]
Length = 258
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEI 54
V VFTDG+ NG ASAG G +FGEN+ N +V TN AEI
Sbjct: 189 VEVFTDGSARGNGTGCASAGSGAWFGENDERNEGVRVPYDEQTNQIAEI 237
>gi|290987559|ref|XP_002676490.1| predicted protein [Naegleria gruberi]
gi|284090092|gb|EFC43746.1| predicted protein [Naegleria gruberi]
Length = 640
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 61 LKQAKSANEKVKLKRSYNDTHAQKKVRNVSSVAM-----RIAQKVDYISHD---VISVGI 112
+ + K +++ ++ R Y D+ +K + R+++ +D+I+ + + VG+
Sbjct: 468 ITEPKESSKLNQVIREYEDSIKNRKGNTTGACFFAVCRGRVSEGLDFINRNGRCCMIVGL 527
Query: 113 PFPSIQDENVKLKRSYNDTHAQK 135
PFP + D VKLKR Y D A++
Sbjct: 528 PFPPLFDLKVKLKRDYLDETAKR 550
>gi|302890705|ref|XP_003044236.1| hypothetical protein NECHADRAFT_55208 [Nectria haematococca mpVI
77-13-4]
gi|256725157|gb|EEU38523.1| hypothetical protein NECHADRAFT_55208 [Nectria haematococca mpVI
77-13-4]
Length = 703
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV------------TN 49
DP V+ + DGAC NG++ SAG+ V G + + V+GR+ T+
Sbjct: 319 DP-RKVLTYADGACTNNGQLEPSAGWAVVCGTPGNDDKSCIVSGRLEDKGPFGDDSVATS 377
Query: 50 NNAEIQGAIHALK 62
N AE++ AI L+
Sbjct: 378 NRAELRAAIAVLR 390
>gi|392546171|ref|ZP_10293308.1| RNase HI, degrades RNA of DNA-RNA hybrids [Pseudoalteromonas rubra
ATCC 29570]
Length = 155
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYF---GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V ++TDG+C N G GYGVY G LN ++T TNN E+ AI AL+
Sbjct: 5 VEIYTDGSCLGNPGPG---GYGVYLSYQGHEKTLNAGYRLT---TNNRMEMLAAIVALET 58
Query: 64 AKSANEKV------KLKRSYNDTHAQKKVRNVSSVAMRIAQKVD 101
K + + +K+ A K RN + A + + VD
Sbjct: 59 LKRPCQVILYTDSQYVKQGIESWLANWKKRNWKTAAKKPVKNVD 102
>gi|268317538|ref|YP_003291257.1| ribonuclease H [Rhodothermus marinus DSM 4252]
gi|262335072|gb|ACY48869.1| ribonuclease H [Rhodothermus marinus DSM 4252]
Length = 159
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P HVV++TDGAC N G G+ N V TNN E+ I AL+
Sbjct: 4 PRKHVVIYTDGACSGNPGPG---GWAAILRYNQHEKVLTGAAPHTTNNRMELTAVIEALR 60
Query: 63 QAK 65
K
Sbjct: 61 ALK 63
>gi|429768950|ref|ZP_19301078.1| ribonuclease HI [Brevundimonas diminuta 470-4]
gi|429188301|gb|EKY29189.1| ribonuclease HI [Brevundimonas diminuta 470-4]
Length = 150
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYF----GENNPLNVAGKVTGRVTNNNAEIQG 56
M+P++HV++ TDGAC N G G+G G L +T TNN E+
Sbjct: 1 MNPNDHVIIHTDGACKGNPGPG---GWGAILQTGGGHEKELWGGEALT---TNNRMELMA 54
Query: 57 AIHALKQAK 65
AI AL+ K
Sbjct: 55 AIMALEALK 63
>gi|354567717|ref|ZP_08986885.1| Ribonuclease H [Fischerella sp. JSC-11]
gi|353542175|gb|EHC11639.1| Ribonuclease H [Fischerella sp. JSC-11]
Length = 304
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++TDGAC N G G+GV YF ++ ++ G TNN E+Q AI AL K+
Sbjct: 10 IYTDGACIGNPGPG---GWGVVVYF-DDGSVHEMGNAAAETTNNKMEMQAAIAALSFLKA 65
Query: 67 ANE 69
+ +
Sbjct: 66 SGQ 68
>gi|186686041|ref|YP_001869237.1| ribonuclease H [Nostoc punctiforme PCC 73102]
gi|186468493|gb|ACC84294.1| ribonuclease H [Nostoc punctiforme PCC 73102]
Length = 302
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
++TDGAC N G G+GV YF + + ++ G + TNN E+Q AI AL+
Sbjct: 10 IYTDGACTGNPGPG---GWGVVVYFSDGS-IHEMGDASPHTTNNKMEMQAAIAALQ 61
>gi|118590744|ref|ZP_01548145.1| ribonuclease H [Stappia aggregata IAM 12614]
gi|118436720|gb|EAV43360.1| ribonuclease H [Stappia aggregata IAM 12614]
Length = 156
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
N V ++TDGAC N G G+GV FGE+ G+ TNN E+ AI AL
Sbjct: 6 NRVTIYTDGACSGNPGPG---GWGVILRFGEHEKELCGGEA--ETTNNRMELMAAIEALN 60
Query: 63 QAK 65
K
Sbjct: 61 ALK 63
>gi|345559915|gb|EGX43046.1| hypothetical protein AOL_s00215g832 [Arthrobotrys oligospora ATCC
24927]
Length = 314
Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 16/163 (9%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNN-AEIQGAIH 59
++P ++V+T G C G A A GVYFG +P N + V + + AEI +
Sbjct: 119 VNPCRSILVYTKGICRGGGTPDAKAAIGVYFGPGSPHNRSILVERQAPGSQIAEIAAVVE 178
Query: 60 ALKQAKSA-----NEKVKLKRSYNDTHAQKKVRNVS------SVAMRIAQKVDY-ISHDV 107
A++ ++ E ++ H + + S S+A+R+ DY +
Sbjct: 179 AMRYMRTVILPRRKEILRESLRTRSRHLSSFIASASGVTSNESIAVRLIIATDYQYLVEC 238
Query: 108 ISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKL 150
+ P P +Q +++ + + K F I E+ KL
Sbjct: 239 LCKPRPLPKMQQ---QIRDQFCGENVPKDNEGFSQILSERRKL 278
>gi|361129403|gb|EHL01310.1| putative Ribonuclease H [Glarea lozoyensis 74030]
Length = 243
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG---RV------------TN 49
N V+ +TDGAC NGK SAG G F N + GK G R+ T+
Sbjct: 47 NQVIFWTDGACLNNGKANPSAGGGFVFSTPN-VKHDGKYHGIHFRLENEGPNGNIEAQTS 105
Query: 50 NNAEIQGAIHALKQAKSANEKVK 72
N AE++ I AL+ + E K
Sbjct: 106 NRAELRAVIAALEFKDRSPEGWK 128
>gi|167384070|ref|XP_001736798.1| regulator of telomere elongation helicase 1 rtel1 [Entamoeba dispar
SAW760]
gi|165900684|gb|EDR26949.1| regulator of telomere elongation helicase 1 rtel1, putative
[Entamoeba dispar SAW760]
Length = 1030
Score = 37.4 bits (85), Expect = 3.2, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 95 RIAQKVDY---ISHDVISVGIPFPSIQDENVKLKRSYNDTHAQK 135
++++ +D+ ++ VI VGIP+PS+ D NV LKR YN+ K
Sbjct: 645 KLSEGIDFGDDMARVVIIVGIPYPSLGDINVNLKRDYNNQENLK 688
>gi|269468812|gb|EEZ80416.1| Ribonuclease HI [uncultured SUP05 cluster bacterium]
Length = 145
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++++TDG C N +G G+GV+ + V TNN E+ AI AL+ KS
Sbjct: 4 IIIYTDGGCRGNPGIG---GWGVWLRYGDHDKKLKGVEKGTTNNQMELMAAIKALEAIKS 60
Query: 67 ANEKVKL 73
+ + L
Sbjct: 61 STISIDL 67
>gi|392569451|gb|EIW62624.1| RNase H, partial [Trametes versicolor FP-101664 SS1]
Length = 259
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHA 60
V+TDG+ +NG A AG G +FG N+ N +V TN AEI + A
Sbjct: 192 VYTDGSAMQNGSASARAGSGAWFGPNDARNEGARVPYDEQTNQAAEIYAVVLA 244
>gi|193215034|ref|YP_001996233.1| ribonuclease H [Chloroherpeton thalassium ATCC 35110]
gi|193088511|gb|ACF13786.1| Ribonuclease H [Chloroherpeton thalassium ATCC 35110]
Length = 146
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
VV++TDGAC N G G+G + FGE ++G + TNN E+ AI AL+Q
Sbjct: 3 QVVIYTDGACSGNPGKG---GWGAVLIFGEKRR-EISG-YEAQTTNNRMEMMAAIQALEQ 57
Query: 64 AK 65
K
Sbjct: 58 LK 59
>gi|348679746|gb|EGZ19562.1| hypothetical protein PHYSODRAFT_285296 [Phytophthora sojae]
Length = 163
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGA 57
D H+V F G+ P NG+ G +A Y V F N A + TNN A+ A
Sbjct: 107 DKHLVSFCAGSAPLNGREGCTAAYAVSFPLENIRTHAMALIDHPTNNRADCLAA 160
>gi|66807703|ref|XP_637574.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
gi|60465999|gb|EAL64066.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
Length = 1078
Score = 37.4 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Query: 95 RIAQKVDY---ISHDVISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ + VI VGIP+PS+ D + LK+ +NDT+ KKGI
Sbjct: 956 KVSEGIDFSDEYARGVIVVGIPYPSLVDLRIVLKKEHNDTN--KKGI 1000
>gi|17227638|ref|NP_484186.1| ribonuclease H [Nostoc sp. PCC 7120]
gi|17135120|dbj|BAB77666.1| ribonuclease H [Nostoc sp. PCC 7120]
Length = 302
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
++TDGAC N G G+GV YF + + ++ G TNN E+Q AI ALK
Sbjct: 10 IYTDGACTGNPGPG---GWGVVVYFSDGS-VHEMGDAAKHTTNNKMEMQAAIAALK 61
>gi|395792092|ref|ZP_10471531.1| ribonuclease H [Bartonella vinsonii subsp. arupensis Pm136co]
gi|423714140|ref|ZP_17688399.1| ribonuclease H [Bartonella vinsonii subsp. arupensis OK-94-513]
gi|395421287|gb|EJF87543.1| ribonuclease H [Bartonella vinsonii subsp. arupensis OK-94-513]
gi|395433011|gb|EJF98985.1| ribonuclease H [Bartonella vinsonii subsp. arupensis Pm136co]
Length = 153
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V ++TDGAC N VG + G L GK TNN E+ AIHALK K
Sbjct: 8 VEIYTDGACSGNPGVGGWGAILRWNGHEREL-YGGKE--HTTNNQMELMAAIHALKALK 63
>gi|350407679|ref|XP_003488158.1| PREDICTED: Fanconi anemia group J protein-like [Bombus impatiens]
Length = 959
Score = 37.4 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 6/56 (10%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQK---KGIPFPSIQ 144
++A+ +D+ ++ VI+VGIP+ +D + +K SYNDT+ +K KG + SIQ
Sbjct: 826 KVAEGIDFKDNEARCVITVGIPYAVRKDPVIDMKLSYNDTNVKKGLLKGSEWYSIQ 881
>gi|428775389|ref|YP_007167176.1| ribonuclease H [Halothece sp. PCC 7418]
gi|428689668|gb|AFZ42962.1| Ribonuclease H [Halothece sp. PCC 7418]
Length = 283
Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 8 VVFTDGACPRNGKVGASAGYG-VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++TDGAC N G G+G V++ +N + G TNN E+Q AI +L+ ++
Sbjct: 9 CIYTDGACTGNPGPG---GWGAVFYFKNGSVYEIGGAEPETTNNRMEMQAAIASLELFQA 65
Query: 67 ANEKVKL 73
+ +K +
Sbjct: 66 SEQKTPI 72
>gi|375306962|ref|ZP_09772254.1| ribonuclease H [Paenibacillus sp. Aloe-11]
gi|375081048|gb|EHS59264.1| ribonuclease H [Paenibacillus sp. Aloe-11]
Length = 145
Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV--YFGENN-PLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V+V+TDGAC N G G+GV +GE+ L+ A K+T TNN EI+ I ALK
Sbjct: 4 VMVYTDGACSGNPGPG---GWGVVLLYGEHRKELSGAEKMT---TNNRMEIRSVIEALKM 57
Query: 64 AK 65
K
Sbjct: 58 LK 59
>gi|16331755|ref|NP_442483.1| ribonuclease H [Synechocystis sp. PCC 6803]
gi|383323498|ref|YP_005384352.1| ribonuclease H [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383326667|ref|YP_005387521.1| ribonuclease H [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383492551|ref|YP_005410228.1| ribonuclease H [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384437819|ref|YP_005652544.1| ribonuclease H [Synechocystis sp. PCC 6803]
gi|451815907|ref|YP_007452359.1| ribonuclease H [Synechocystis sp. PCC 6803]
gi|6685893|sp|Q55801.1|RNH_SYNY3 RecName: Full=Ribonuclease HI; Short=RNase HI
gi|1001716|dbj|BAA10553.1| ribonuclease H [Synechocystis sp. PCC 6803]
gi|339274852|dbj|BAK51339.1| ribonuclease H [Synechocystis sp. PCC 6803]
gi|359272818|dbj|BAL30337.1| ribonuclease H [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359275988|dbj|BAL33506.1| ribonuclease H [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359279158|dbj|BAL36675.1| ribonuclease H [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|451781876|gb|AGF52845.1| ribonuclease H [Synechocystis sp. PCC 6803]
Length = 160
Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 5 NHVVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
N V ++TDGAC P G GA YG G L+ K+T TNN EI GAI AL
Sbjct: 6 NSVTLYTDGACSMNPGPGGYGAVILYGD--GRREELSAGYKMT---TNNRMEIMGAIAAL 60
>gi|451994183|gb|EMD86654.1| hypothetical protein COCHEDRAFT_1115293, partial [Cochliobolus
heterostrophus C5]
Length = 147
Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV------TNNNAEIQGAIHAL 61
++FTDGAC NG+ A AG GV +G ++ + +T V +N AE+ A +
Sbjct: 1 IIFTDGACTNNGRPEAKAGIGVAYGNDDKSQLFLPITDVVDEFPLRSNQRAELCAARSGV 60
Query: 62 KQAKSANEK 70
+ AN +
Sbjct: 61 EFLSKANTQ 69
>gi|75907733|ref|YP_322029.1| ribonuclease H [Anabaena variabilis ATCC 29413]
gi|75701458|gb|ABA21134.1| Ribonuclease H [Anabaena variabilis ATCC 29413]
Length = 302
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
++TDGAC N G G+GV YF + + ++ G TNN E+Q AI ALK
Sbjct: 10 IYTDGACTGNPGPG---GWGVVVYFSDGS-VHEMGDAAKHTTNNKMEMQAAIAALK 61
>gi|296413118|ref|XP_002836263.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630076|emb|CAZ80454.1| unnamed protein product [Tuber melanosporum]
Length = 782
Score = 37.0 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 7/65 (10%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNN----AEIQGA 57
DP V++F DG+C +GK+ + GYGVYF + NV G++ +++ AEI A
Sbjct: 275 DP-KQVLLFIDGSCISSGKLDSRPGYGVYFRRED--NVYGRLEEYDGDDSASGVAEIWAA 331
Query: 58 IHALK 62
+ AL+
Sbjct: 332 VIALQ 336
>gi|170074925|ref|XP_001870636.1| ribonuclease H1 [Culex quinquefasciatus]
gi|167871986|gb|EDS35369.1| ribonuclease H1 [Culex quinquefasciatus]
Length = 121
Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNV 39
D V +T+G+ NG A AG GVYFGE + LN
Sbjct: 14 DEAGFVYAYTNGSWEGNGTAAACAGLGVYFGEGHALNA 51
>gi|334182721|ref|NP_173498.3| RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]
gi|332191897|gb|AEE30018.1| RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]
Length = 1144
Score = 37.0 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
VI VGIP P++ D V+LKR YNDT+ K +
Sbjct: 613 VIIVGIPLPNLGDILVELKRKYNDTNKSSKNL 644
>gi|92119198|ref|YP_578927.1| ribonuclease H [Nitrobacter hamburgensis X14]
gi|123264908|sp|Q1QH30.1|RNH_NITHX RecName: Full=Ribonuclease H; Short=RNase H
gi|91802092|gb|ABE64467.1| RNase HI [Nitrobacter hamburgensis X14]
Length = 151
Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + FGE G+ TNN E+ AI AL+
Sbjct: 8 HVTIFTDGACSGNPGPG---GWGAILRFGEIEKELKGGEP--HTTNNRMELLAAISALEA 62
Query: 64 AKSA 67
K A
Sbjct: 63 LKKA 66
>gi|395781827|ref|ZP_10462238.1| ribonuclease H [Bartonella rattimassiliensis 15908]
gi|395420482|gb|EJF86758.1| ribonuclease H [Bartonella rattimassiliensis 15908]
Length = 155
Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V ++TDGAC N VG ++ G L GKV TNN E+ AI ALK K
Sbjct: 8 VEIYTDGACSGNPGVGGWGAILLWNGHEREL-YGGKV--HTTNNQMELMAAICALKALK 63
>gi|442323255|ref|YP_007363276.1| ribonuclease H [Myxococcus stipitatus DSM 14675]
gi|441490897|gb|AGC47592.1| ribonuclease H [Myxococcus stipitatus DSM 14675]
Length = 208
Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V V++DGA R A AG V E L G+ G TNN AE QG + L+ A
Sbjct: 76 GRVRVYSDGAA-RGNPGPAGAGAVVTDAEGQVLARLGRFLGTQTNNTAEYQGLLLGLRHA 134
Query: 65 KS 66
KS
Sbjct: 135 KS 136
>gi|418297192|ref|ZP_12909034.1| putative ribonuclease HI [Agrobacterium tumefaciens CCNWGS0286]
gi|355538290|gb|EHH07537.1| putative ribonuclease HI [Agrobacterium tumefaciens CCNWGS0286]
Length = 229
Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG--RVTNNNAEIQGAIHALKQA 64
V +F DGAC N G GY VY N + VAG G TNN E+ G + A+++A
Sbjct: 56 VHIFCDGACEPNPGAGG-WGYVVY---ENGVEVAGFCGGSTEATNNVMELFGLLSAIEKA 111
Query: 65 KS 66
KS
Sbjct: 112 KS 113
>gi|268532346|ref|XP_002631301.1| Hypothetical protein CBG03115 [Caenorhabditis briggsae]
Length = 545
Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ + +V GAC +G A A YG+Y+GE +P N G V G ++ A AL
Sbjct: 159 EGYRIVDIHGAC-YDGIPNAKAAYGIYWGEGDPRNENGTVNGMQSSYRAYFIALYRALAV 217
Query: 64 AKSANEKVKLKRS 76
A +N + RS
Sbjct: 218 ALDSNHDELIIRS 230
>gi|229012096|ref|ZP_04169275.1| Sarcosine oxidase alpha subunit [Bacillus mycoides DSM 2048]
gi|423487963|ref|ZP_17464645.1| hypothetical protein IEU_02586 [Bacillus cereus BtB2-4]
gi|423493685|ref|ZP_17470329.1| hypothetical protein IEW_02583 [Bacillus cereus CER057]
gi|423499523|ref|ZP_17476140.1| hypothetical protein IEY_02750 [Bacillus cereus CER074]
gi|423599852|ref|ZP_17575852.1| hypothetical protein III_02654 [Bacillus cereus VD078]
gi|228749184|gb|EEL99030.1| Sarcosine oxidase alpha subunit [Bacillus mycoides DSM 2048]
gi|401153356|gb|EJQ60783.1| hypothetical protein IEW_02583 [Bacillus cereus CER057]
gi|401156781|gb|EJQ64183.1| hypothetical protein IEY_02750 [Bacillus cereus CER074]
gi|401234539|gb|EJR41017.1| hypothetical protein III_02654 [Bacillus cereus VD078]
gi|402436028|gb|EJV68061.1| hypothetical protein IEU_02586 [Bacillus cereus BtB2-4]
Length = 411
Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 14/100 (14%)
Query: 37 LNVAGKVTGRVTNNNAEIQGAIHALKQAKSANEKVKLKRSYNDTHAQKKVRNVSSVAMRI 96
L VAG +TG + A +QG + L AK A+EK+ + D Q+ ++NV SV +
Sbjct: 323 LFVAGNITGIESGKIAMVQGTVAGLSVAKHASEKLDVV----DQQLQQAIQNVHSVRQKA 378
Query: 97 AQKVDYISHDVISVGIPFPSIQDENVKLKRSYNDTHAQKK 136
A + + +I VG + + +L R Y+ T+A K
Sbjct: 379 AIQFN----PMIDVG------RRKMNELWRDYSSTYAHTK 408
>gi|213019774|ref|ZP_03335577.1| ribonuclease h [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
gi|212994604|gb|EEB55249.1| ribonuclease h [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
Length = 185
Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG---RVTNNNAEIQGAIHALKQ 63
V+++TDGAC N G A +Y EN + + +++G TNN E++ I+ LK
Sbjct: 14 VIIYTDGACSGNPGPGGWAAVVMY--ENKSVFIKKRISGGEENTTNNKMELKAVINGLKM 71
Query: 64 AK 65
K
Sbjct: 72 LK 73
>gi|414077277|ref|YP_006996595.1| ribonuclease H-like protein [Anabaena sp. 90]
gi|413970693|gb|AFW94782.1| ribonuclease H-like protein [Anabaena sp. 90]
Length = 302
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 9 VFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++TDGAC N G G+G VYF + ++ G + TNN E+Q AI AL+ KS
Sbjct: 10 IYTDGACTGNPGPG---GWGTVVYF-HDGSVHEMGDSSQHTTNNKMEMQAAIAALEFFKS 65
Query: 67 ANE 69
+ +
Sbjct: 66 SRQ 68
>gi|118602401|ref|YP_903616.1| ribonuclease H [Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
gi|187611403|sp|A1AW38.1|RNH_RUTMC RecName: Full=Ribonuclease H; Short=RNase H
gi|118567340|gb|ABL02145.1| ribonuclease H [Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
Length = 146
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N ++++TDG C N +G G+GV+ + V TNN E+ I AL+
Sbjct: 2 NKIIIYTDGGCRGNPGIG---GWGVWLKYGDYDKKLQGVQQDTTNNQMELTATIKALEVI 58
Query: 65 KSANEKVKL--KRSYNDTHAQKKVRNVSSVAMRIAQK 99
KS + + L Y T + ++N + + A K
Sbjct: 59 KSNDIAIDLFTDSKYVITGISEWIKNWKAKGWKTANK 95
>gi|423662312|ref|ZP_17637481.1| hypothetical protein IKM_02709 [Bacillus cereus VDM022]
gi|401297931|gb|EJS03536.1| hypothetical protein IKM_02709 [Bacillus cereus VDM022]
Length = 411
Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 14/100 (14%)
Query: 37 LNVAGKVTGRVTNNNAEIQGAIHALKQAKSANEKVKLKRSYNDTHAQKKVRNVSSVAMRI 96
L VAG +TG + A +QG + L AK A+EK+ + D Q+ ++NV SV +
Sbjct: 323 LFVAGNITGIESGKIAMVQGTVAGLSVAKHASEKLDVV----DQQLQQAIQNVHSVRQKA 378
Query: 97 AQKVDYISHDVISVGIPFPSIQDENVKLKRSYNDTHAQKK 136
A + + +I VG + + +L R Y+ T+A K
Sbjct: 379 AIQFN----PMIDVG------RRKMNELWRDYSSTYAHTK 408
>gi|308802574|ref|XP_003078600.1| Helicase of the DEAD superfamily (ISS) [Ostreococcus tauri]
gi|116057053|emb|CAL51480.1| Helicase of the DEAD superfamily (ISS) [Ostreococcus tauri]
Length = 970
Score = 37.0 bits (84), Expect = 4.3, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 95 RIAQKVDYI---SHDVISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + V VGIPFPS+ D VK K+ +ND+ K+ + + +
Sbjct: 700 KVSEGIDFKDDKARAVFCVGIPFPSVFDPRVKAKKEFNDSPTSKQQGMLAGGEWYRAQAY 759
Query: 152 RSYN 155
R+YN
Sbjct: 760 RAYN 763
>gi|414169880|ref|ZP_11425613.1| ribonuclease H [Afipia clevelandensis ATCC 49720]
gi|410885612|gb|EKS33427.1| ribonuclease H [Afipia clevelandensis ATCC 49720]
Length = 149
Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTG---RVTNNNAEIQGAIHA 60
HV +FTDGAC RN G G+G + FG+ V ++ G TNN E+ AI A
Sbjct: 8 HVTIFTDGACSRNPGPG---GWGAILRFGD-----VEKELKGGENPSTNNRMELMAAISA 59
Query: 61 LKQAK 65
L+ K
Sbjct: 60 LEALK 64
>gi|169621055|ref|XP_001803938.1| hypothetical protein SNOG_13731 [Phaeosphaeria nodorum SN15]
gi|111057635|gb|EAT78755.1| hypothetical protein SNOG_13731 [Phaeosphaeria nodorum SN15]
Length = 225
Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 3 PDNHV-VVFTDGACPRNGKVGASAGYGVYFGENN 35
P +H +VFTDGAC NG A AG GV +G N+
Sbjct: 58 PCHHFRIVFTDGACTHNGNPRARAGAGVAYGNND 91
>gi|190570726|ref|YP_001975084.1| ribonuclease h [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
gi|190356998|emb|CAQ54387.1| ribonuclease h [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
Length = 177
Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG---RVTNNNAEIQGAIHALKQ 63
V+++TDGAC N G A +Y EN + + +++G TNN E++ I+ LK
Sbjct: 6 VIIYTDGACSGNPGPGGWAAVVMY--ENKSVFIKKRISGGEENTTNNKMELKAVINGLKM 63
Query: 64 AK 65
K
Sbjct: 64 LK 65
>gi|374322139|ref|YP_005075268.1| ribonuclease H [Paenibacillus terrae HPL-003]
gi|357201148|gb|AET59045.1| ribonuclease H [Paenibacillus terrae HPL-003]
Length = 159
Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 9/59 (15%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV--YFGENN-PLNVAGKVTGRVTNNNAEIQGAIHALK 62
V+V+TDGAC N G G+GV +GE+ L+ A K+T TNN EI+ I ALK
Sbjct: 18 VMVYTDGACSGNPGPG---GWGVVLLYGEHRKELSGAEKMT---TNNRMEIKAVIEALK 70
>gi|308499723|ref|XP_003112047.1| CRE-RTEL-1 protein [Caenorhabditis remanei]
gi|308268528|gb|EFP12481.1| CRE-RTEL-1 protein [Caenorhabditis remanei]
Length = 535
Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYI---SHDVISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ S VI VGIP+P I DE V LK+ Y D +K +
Sbjct: 168 KVSEGIDFCDAESRAVIIVGIPYPPIHDERVVLKKKYLDDLMGRKDV 214
>gi|307941651|ref|ZP_07657006.1| ribonuclease HI [Roseibium sp. TrichSKD4]
gi|307775259|gb|EFO34465.1| ribonuclease HI [Roseibium sp. TrichSKD4]
Length = 150
Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAI 58
M + VV++TDGAC N G G+G + FG++ G+ G TNN E+ AI
Sbjct: 1 MSDEKRVVIYTDGACSGNPGPG---GWGAILRFGQHEKELSGGE--GETTNNRMELTAAI 55
Query: 59 HAL 61
AL
Sbjct: 56 KAL 58
>gi|423469109|ref|ZP_17445853.1| hypothetical protein IEM_00415 [Bacillus cereus BAG6O-2]
gi|402440460|gb|EJV72453.1| hypothetical protein IEM_00415 [Bacillus cereus BAG6O-2]
Length = 411
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 37 LNVAGKVTGRVTNNNAEIQGAIHALKQAKSANEKVKLKRSYNDTHAQKKVRNVSSVAMRI 96
L VAG +TG + A QGA+ L AK A+E KR D Q+ ++NV SV +
Sbjct: 323 LFVAGNITGIESGKIAMAQGAVAGLSIAKHASE----KRDVVDQQLQQAMQNVHSVRQKA 378
Query: 97 AQKVDYISHDVISVGIPFPSIQDENVKLKRSYNDTHAQKK 136
A + + +I VG + + +L R Y+ T+A K
Sbjct: 379 AIQFN----PMIDVG------RRKMNELWRDYSSTYAHTK 408
>gi|410694240|ref|YP_003624862.1| Ribonuclease HI (RNase HI) (Ribonuclease H) (RNase H) [Thiomonas
sp. 3As]
gi|294340665|emb|CAZ89057.1| Ribonuclease HI (RNase HI) (Ribonuclease H) (RNase H) [Thiomonas
sp. 3As]
Length = 151
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIH 59
+ DN ++++TDGAC N G G+GV G + G++ + TNN E+ AI
Sbjct: 4 ESDNEIIIYTDGACKGNPGPG---GWGVVLRSGAHEKTLHGGEL--QTTNNRMELMAAIM 58
Query: 60 ALKQAK 65
AL+ K
Sbjct: 59 ALEALK 64
>gi|209886441|ref|YP_002290298.1| ribonuclease HI [Oligotropha carboxidovorans OM5]
gi|337740024|ref|YP_004631752.1| ribonuclease H [Oligotropha carboxidovorans OM5]
gi|386029041|ref|YP_005949816.1| ribonuclease H [Oligotropha carboxidovorans OM4]
gi|229564314|sp|B6JJ39.1|RNH_OLICO RecName: Full=Ribonuclease H; Short=RNase H
gi|209874637|gb|ACI94433.1| ribonuclease HI [Oligotropha carboxidovorans OM5]
gi|336094109|gb|AEI01935.1| ribonuclease H [Oligotropha carboxidovorans OM4]
gi|336097688|gb|AEI05511.1| ribonuclease H [Oligotropha carboxidovorans OM5]
Length = 149
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HVV+FTDGAC N G G+G + FGE G+ TNN E+ AI AL+
Sbjct: 8 HVVIFTDGACSGNPGPG---GWGAILRFGEIEKELKGGE--NPTTNNRMELLAAISALEA 62
Query: 64 AK 65
K
Sbjct: 63 LK 64
>gi|162462746|ref|NP_001104820.1| FancJ-like protein [Bombyx mori]
gi|161339205|dbj|BAF94023.1| FancJ-like protein [Bombyx mori]
Length = 851
Score = 36.6 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 101 DYISHDVISVGIPFPSIQDENVKLKRSYNDTHAQKK 136
D + V+++G+PFP+I D V K YND H+ K
Sbjct: 731 DRQARAVVTIGVPFPTIGDRMVTEKMKYNDKHSNGK 766
>gi|402594364|gb|EJW88290.1| hypothetical protein WUBG_00802 [Wuchereria bancrofti]
Length = 961
Score = 36.6 bits (83), Expect = 5.0, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 95 RIAQKVDYI---SHDVISVGIPFPSIQDENVKLKRSYNDTHAQK 135
++++ +D+ + V++VGIPFP+ DE V K+ YND + K
Sbjct: 813 KVSEGIDFTDDRARCVMTVGIPFPNAMDEQVIEKKKYNDDYCTK 856
>gi|449018745|dbj|BAM82147.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 1142
Score = 36.6 bits (83), Expect = 5.3, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 31 FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANEKVKLKRSYNDTHAQ--KKVRN 88
F NNPLN A + GR A + ++A+K+ R D + Q R+
Sbjct: 736 FHHNNPLNPAHR--GR-QPTQATVWDRLNAVKRIFMEPRDADASRQTVDAYRQWISSGRD 792
Query: 89 VSSVAM---RIAQKVDY---ISHDVISVGIPFPSIQDENVKLKRSYNDTHA 133
A+ R + +D+ VI VG+PFPS D + LKR Y + A
Sbjct: 793 ACLFAVCRGRTGEGIDFADDFGRTVILVGLPFPSTTDPRIILKRDYLERQA 843
>gi|390456008|ref|ZP_10241536.1| ribonuclease H [Paenibacillus peoriae KCTC 3763]
Length = 145
Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV--YFGENN-PLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V+V+TDGAC N G G+GV +GE+ L+ A K+T TNN EI+ I ALK
Sbjct: 4 VMVYTDGACSGNPGPG---GWGVVLLYGEHRKELSGAEKMT---TNNRMEIRSVIEALKL 57
Query: 64 AK 65
K
Sbjct: 58 LK 59
>gi|451941635|ref|YP_007462272.1| ribonuclease HI [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
gi|451901022|gb|AGF75484.1| ribonuclease HI [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
Length = 153
Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V ++TDGAC N VG + G L GK TNN E+ AIHALK K
Sbjct: 8 VEIYTDGACSGNPGVGGWGAILRWNGHEREL-YGGKE--HTTNNQMELMAAIHALKALK 63
>gi|307202440|gb|EFN81860.1| Fanconi anemia group J protein [Harpegnathos saltator]
Length = 293
Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQK 135
++A+ +D+ ++ V++VGIPF SI++ V +K+ YND++ K
Sbjct: 180 KVAEGIDFSDNEARCVLTVGIPFTSIKNVAVAMKKDYNDSNMSK 223
>gi|146421522|ref|XP_001486706.1| hypothetical protein PGUG_00083 [Meyerozyma guilliermondii ATCC
6260]
Length = 243
Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 9 VFTDGACPRNG-KVGASAGYGVYFGENNPLNV------AGKVTGRVTNNNAEIQGAIHAL 61
++ DGAC RNG + GYGV++G + N A K++G TN +E++ HA+
Sbjct: 75 IYIDGACKRNGMALQRKTGYGVFYGNGDVRNAAVSSSNADKLSG--TNQRSELRALYHAI 132
>gi|302883098|ref|XP_003040452.1| hypothetical protein NECHADRAFT_55623 [Nectria haematococca mpVI
77-13-4]
gi|256721334|gb|EEU34739.1| hypothetical protein NECHADRAFT_55623 [Nectria haematococca mpVI
77-13-4]
Length = 163
Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQ 63
+++V+ DGA NG GA A GV+ G+ + N + + TN AE++ I AL+Q
Sbjct: 68 DYIVIAVDGAYEGNGMTGARAAAGVFVGKTSQYNKSVLLAEPNATNQVAELRARILALRQ 127
>gi|456063107|ref|YP_007502077.1| Ribonuclease H [beta proteobacterium CB]
gi|455440404|gb|AGG33342.1| Ribonuclease H [beta proteobacterium CB]
Length = 151
Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYF---GENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
H+V++TDGAC N G G+G G L+ + T TNN EI IHAL+
Sbjct: 9 HIVIYTDGACKGNPGPG---GWGAVLRSGGHEKHLHGGAEHT---TNNRMEISAVIHALR 62
Query: 63 QAK 65
K
Sbjct: 63 ALK 65
>gi|359491914|ref|XP_002272718.2| PREDICTED: Fanconi anemia group J protein-like [Vitis vinifera]
Length = 1255
Score = 36.6 bits (83), Expect = 5.8, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 74 KRSYNDTHAQKKVRNVSSVAMRIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYND 130
++ D +K ++ ++++ +D+ + VI VGIPFP++ D V K+ YND
Sbjct: 635 EKESQDNSKKKGAAFLAVFRGKVSEGIDFSDENARAVIIVGIPFPNVHDIQVAQKKKYND 694
Query: 131 THAQKKGI 138
+ K +
Sbjct: 695 MYKSSKDL 702
>gi|254579441|ref|XP_002495706.1| ZYRO0C01078p [Zygosaccharomyces rouxii]
gi|238938597|emb|CAR26773.1| ZYRO0C01078p [Zygosaccharomyces rouxii]
Length = 348
Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV--TGRVTNNNAEIQGAIHAL 61
D V+ DG+ NG + AGYGVYF E +P + +G TNN AEI+ +AL
Sbjct: 184 DQVTKVYCDGSALSNGHSKSRAGYGVYF-EGHPEKSISEPLRSGPQTNNRAEIEAVSNAL 242
>gi|308493705|ref|XP_003109042.1| hypothetical protein CRE_11730 [Caenorhabditis remanei]
gi|308247599|gb|EFO91551.1| hypothetical protein CRE_11730 [Caenorhabditis remanei]
Length = 170
Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAG-KVTGRVTNNNAEIQGAIHALK 62
+ V+TDG RNG+ A G+ V F + N G G TNN E++ ALK
Sbjct: 14 IRVYTDGCALRNGRSDAKGGWAVVFQNDRLFNATGFSEYGPQTNNRYELKAIEEALK 70
>gi|443325980|ref|ZP_21054650.1| ribonuclease HI [Xenococcus sp. PCC 7305]
gi|442794417|gb|ELS03834.1| ribonuclease HI [Xenococcus sp. PCC 7305]
Length = 165
Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V+++TDGAC N G GYG + +GE+ ++G R TNN E+ AI AL+
Sbjct: 15 QVIIYTDGACTGNPGAG---GYGAVLIYGEHRQ-EISGGYK-RTTNNRMEMMAAIAALQS 69
Query: 64 AK 65
K
Sbjct: 70 LK 71
>gi|344231819|gb|EGV63701.1| ribonuclease H-like protein [Candida tenuis ATCC 10573]
Length = 293
Score = 36.2 bits (82), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNP--LNVAGKVTG----RVTNNNAEI 54
+ D + ++ DGA NGK A AGYGVY + +P ++VA + TN E+
Sbjct: 120 ISSDQKIEIYCDGAAKNNGKSNALAGYGVYIKDLSPKGISVAYDQISIDKLKPTNQFMEL 179
Query: 55 QGAIHALKQAKSANEKVK 72
HAL S+ E K
Sbjct: 180 YAIRHALMIIFSSLEHCK 197
>gi|386039423|ref|YP_005958377.1| ribonuclease HI [Paenibacillus polymyxa M1]
gi|343095461|emb|CCC83670.1| ribonuclease HI [Paenibacillus polymyxa M1]
Length = 145
Score = 36.2 bits (82), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV--YFGENN-PLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V+V+TDGAC N G G+G+ +GE+ L+ A K+T TNN EI+ I ALK
Sbjct: 4 VMVYTDGACSGNPGPG---GWGIILLYGEHRKELSGAEKMT---TNNRMEIKSVIEALKL 57
Query: 64 AKS 66
K
Sbjct: 58 LKE 60
>gi|308067490|ref|YP_003869095.1| ribonuclease H [Paenibacillus polymyxa E681]
gi|305856769|gb|ADM68557.1| Ribonuclease H (RNase H) [Paenibacillus polymyxa E681]
Length = 146
Score = 36.2 bits (82), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV--YFGENN-PLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V+V+TDGAC N G G+G+ +GE+ L+ A K+T TNN EI+ I ALK
Sbjct: 5 VMVYTDGACSGNPGPG---GWGIVLLYGEHRKELSGAEKMT---TNNRMEIKSVIEALKL 58
Query: 64 AKS 66
K
Sbjct: 59 LKE 61
>gi|296125369|ref|YP_003632621.1| ribonuclease H [Brachyspira murdochii DSM 12563]
gi|296017185|gb|ADG70422.1| Ribonuclease H [Brachyspira murdochii DSM 12563]
Length = 163
Score = 36.2 bits (82), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M DN ++++TDG C N +GA + N L + G+ TNN E++ AI A
Sbjct: 1 MIRDN-IIIYTDGGCRGNPGLGAWGAILISEKHNLRLEI-GESEDNTTNNRMEMKAAIKA 58
Query: 61 LKQAK 65
L++ K
Sbjct: 59 LERLK 63
>gi|149924708|ref|ZP_01913057.1| DNA polymerase III, epsilon subunit [Plesiocystis pacifica SIR-1]
gi|149814435|gb|EDM74027.1| DNA polymerase III, epsilon subunit [Plesiocystis pacifica SIR-1]
Length = 234
Score = 36.2 bits (82), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ +++ TDGAC N AG GV+ + + + G TNN AE++ + AL +A
Sbjct: 91 DTIIIHTDGACSGNP---GPAGLGVHIVRPDSITEISEFIGDATNNVAELKAILRAL-EA 146
Query: 65 KSANEKVKLKRSYNDT 80
+ EK + Y D+
Sbjct: 147 ITDEEKERRIHLYTDS 162
>gi|190344329|gb|EDK35985.2| hypothetical protein PGUG_00083 [Meyerozyma guilliermondii ATCC
6260]
Length = 243
Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 9 VFTDGACPRNGKVGA-SAGYGVYFGENNPLNV------AGKVTGRVTNNNAEIQGAIHAL 61
++ DGAC RNG GYGV++G + N A K++G TN +E++ HA+
Sbjct: 75 IYIDGACKRNGMASQRKTGYGVFYGNGDVRNAAVSSSNADKLSG--TNQRSELRALYHAI 132
>gi|344231820|gb|EGV63702.1| hypothetical protein CANTEDRAFT_114804 [Candida tenuis ATCC 10573]
Length = 234
Score = 36.2 bits (82), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNP--LNVAGKVTG----RVTNNNAEI 54
+ D + ++ DGA NGK A AGYGVY + +P ++VA + TN E+
Sbjct: 61 ISSDQKIEIYCDGAAKNNGKSNALAGYGVYIKDLSPKGISVAYDQISIDKLKPTNQFMEL 120
Query: 55 QGAIHALKQAKSANEKVK 72
HAL S+ E K
Sbjct: 121 YAIRHALMIIFSSLEHCK 138
>gi|154317242|ref|XP_001557941.1| hypothetical protein BC1G_03523 [Botryotinia fuckeliana B05.10]
Length = 344
Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAI 58
+D +HVV D AC G+ A YGVY G+ P +V+ V + T AE+
Sbjct: 153 IDEGSHVVAI-DSACKTTGQEATRAAYGVYRGDTTPCSVSKLVDEHLPQTTQVAELLAVR 211
Query: 59 HALKQAKS 66
K A+S
Sbjct: 212 TVFKLAES 219
>gi|313233471|emb|CBY09643.1| unnamed protein product [Oikopleura dioica]
Length = 169
Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 16/127 (12%)
Query: 7 VVVFTDGACPRNGKVGAS-AGYGVYFG-ENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQ 63
+ +TDG+C N + G +G GV+FG + RV TN +AE++ A+ A++
Sbjct: 25 FICYTDGSCKGNHQRGIRFSGSGVHFGYRKEIIRPCHTYNPRVSTNQHAELKAALLAIRH 84
Query: 64 AKSANEKVKLKRSYNDTHAQKKVRNV------SSVAMRIAQKVDYISHDVISVGIPF--- 114
A EK L R T +Q + + ++ +A+ VD IS+ + V + F
Sbjct: 85 A----EKYNLDRLQIRTDSQFLIDMIPHRSYGGNMVSHLAEIVDEISYLMNYVDVEFVHV 140
Query: 115 PSIQDEN 121
P+ ++EN
Sbjct: 141 PAHRNEN 147
>gi|119474997|ref|ZP_01615350.1| hypothetical ribonuclease HI [marine gamma proteobacterium
HTCC2143]
gi|119451200|gb|EAW32433.1| hypothetical ribonuclease HI [marine gamma proteobacterium
HTCC2143]
Length = 250
Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 4 DNHVVVFTDGAC-PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
D V ++ DGAC P GK G G +Y G+ G TNN AE+ G H+L
Sbjct: 79 DTDVAIYCDGACDPNPGKAGT--GIAIYKGKKLNQLWYGLYNPAGTNNTAELLGLYHSLT 136
Query: 63 QAK 65
AK
Sbjct: 137 LAK 139
>gi|429851770|gb|ELA26934.1| hypothetical protein CGGC5_12124 [Colletotrichum gloeosporioides
Nara gc5]
Length = 307
Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVA------------GKVTGRVTNNNA 52
+ +++ ACP NG + GV+FG NNP N++ K+ R T + A
Sbjct: 92 DSLIIAVASACPANGP--NKSAIGVFFGPNNPFNLSLAVPTMYRVEGGEKLLLRHTKHRA 149
Query: 53 EIQGAIHALKQAKSANEKVKLKRSYN 78
E+ G I AL S + ++ N
Sbjct: 150 ELYGVIAALNAVYSFTRRDSIESPAN 175
>gi|157737729|ref|YP_001490412.1| ribonuclease HI [Arcobacter butzleri RM4018]
gi|384156097|ref|YP_005538912.1| ribonuclease HI [Arcobacter butzleri ED-1]
gi|157699583|gb|ABV67743.1| ribonuclease HI [Arcobacter butzleri RM4018]
gi|345469651|dbj|BAK71102.1| ribonuclease HI [Arcobacter butzleri ED-1]
Length = 268
Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 2 DPDNHVVVFTDGACPRN-GKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+ + H+ ++ DGAC N G G+ G +Y NP+ + G TNN AE+ A
Sbjct: 97 EQEEHIKIYCDGACSGNPGNAGS--GIVIYSNSKNPVLLYGAYVENGTNNIAELNALFQA 154
Query: 61 LKQA 64
L A
Sbjct: 155 LTIA 158
>gi|148655168|ref|YP_001275373.1| ribonuclease H [Roseiflexus sp. RS-1]
gi|148567278|gb|ABQ89423.1| Ribonuclease H [Roseiflexus sp. RS-1]
Length = 214
Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ +FTDGAC N G G+ +N + G R TNN E++ A+ AL++
Sbjct: 2 IEIFTDGACRGNPGPG---GWAAVIVQNGEVIEIGGAEERTTNNRMELRAAVEALRR 55
>gi|73667375|ref|YP_303391.1| ribonuclease H [Ehrlichia canis str. Jake]
gi|123759436|sp|Q3YR62.1|RNH_EHRCJ RecName: Full=Ribonuclease H; Short=RNase H
gi|72394516|gb|AAZ68793.1| RNase H [Ehrlichia canis str. Jake]
Length = 146
Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYG-VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
D N VV++TDGAC N G G+G + + N + G TNN E+ I A
Sbjct: 3 DELNKVVIYTDGACSGNPGPG---GWGAILLFDKNERTICGN-NPDTTNNRMELTAVIEA 58
Query: 61 LKQAKSA 67
LK K A
Sbjct: 59 LKFLKVA 65
>gi|310640259|ref|YP_003945017.1| ribonuclease hi [Paenibacillus polymyxa SC2]
gi|309245209|gb|ADO54776.1| Ribonuclease HI [Paenibacillus polymyxa SC2]
Length = 145
Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV--YFGENN-PLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V+V+TDGAC N G G+G+ +GE+ L+ A K+T TNN EI+ I ALK
Sbjct: 4 VMVYTDGACSGNPGPG---GWGIVLLYGEHRKELSGAEKMT---TNNRMEIKSVIEALKL 57
Query: 64 AKS 66
K
Sbjct: 58 LKE 60
>gi|298489925|ref|YP_003720102.1| ribonuclease H ['Nostoc azollae' 0708]
gi|298231843|gb|ADI62979.1| Ribonuclease H ['Nostoc azollae' 0708]
Length = 302
Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
++TDGAC N G A VYF + + ++ G V+ TNN E+Q AI AL+
Sbjct: 10 IYTDGACTGNPGPGGWAVV-VYFNDGS-VHEMGDVSRHTTNNKMEMQAAIAALE 61
>gi|343507636|ref|ZP_08745028.1| ribonuclease H [Vibrio ichthyoenteri ATCC 700023]
gi|342797001|gb|EGU32658.1| ribonuclease H [Vibrio ichthyoenteri ATCC 700023]
Length = 282
Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 7 VVVFTDGAC-PRNGKVGASAGYGVYFGENNPLN--VAGKVTGRVTNNNAEIQGAIHALKQ 63
+ +FTDGAC P G+ G G +Y ++N L+ G G TNN AE+ G A
Sbjct: 114 IKIFTDGACEPNPGEAGT--GLAIY--QDNQLSELWYGLYQGMGTNNTAELNGLYQAFLM 169
Query: 64 AKSANEK 70
A+ +E+
Sbjct: 170 AQQKSEQ 176
>gi|388570035|ref|ZP_10156408.1| ribonuclease H [Hydrogenophaga sp. PBC]
gi|388262751|gb|EIK88368.1| ribonuclease H [Hydrogenophaga sp. PBC]
Length = 144
Score = 35.8 bits (81), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
+HVV++TDGAC N G G+GVY G++ G+ TNN E+ I AL
Sbjct: 2 DHVVIYTDGACKGNPGPG---GWGVYLKSGDHEKELWGGERD--TTNNRMELMAVIQALS 56
Query: 63 QAK 65
K
Sbjct: 57 ALK 59
>gi|315637507|ref|ZP_07892717.1| ribonuclease HI [Arcobacter butzleri JV22]
gi|315478225|gb|EFU68948.1| ribonuclease HI [Arcobacter butzleri JV22]
Length = 268
Score = 35.8 bits (81), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 2 DPDNHVVVFTDGACPRN-GKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+ + H+ ++ DGAC N G G+ G +Y NP+ + G TNN AE+ A
Sbjct: 97 EQEEHIKIYCDGACSGNPGNAGS--GIVIYSNSKNPVLLYGAYVENGTNNIAELNALFQA 154
Query: 61 LKQA 64
L A
Sbjct: 155 LTIA 158
>gi|301105990|ref|XP_002902078.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098698|gb|EEY56750.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 118
Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAK 65
+V F G+ RNG+ +A Y F N +V V G T+N AE A+ A+++A
Sbjct: 17 IVAFCGGSALRNGEPDCNAAYACIFPHNRDWDVVKSVEGPWPTSNRAEYMAALAAMERAN 76
Query: 66 -SANEKVKLKRSYNDT 80
++K K+ Y+D+
Sbjct: 77 IQDSDKRKVLFIYSDS 92
>gi|17535073|ref|NP_496532.1| Protein K12D12.5 [Caenorhabditis elegans]
gi|3878528|emb|CAA88868.1| Protein K12D12.5 [Caenorhabditis elegans]
Length = 648
Score = 35.8 bits (81), Expect = 8.2, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 23 ASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANEKVKLKRSYNDTHA 82
+ Y VY+GEN+ N G V R A++ A+ ALK+A+S N + KL +
Sbjct: 359 SKVSYAVYWGENDEKNERGPVNMRAHAFQADLYAAMCALKKARSKNIR-KLHLLTTSEYF 417
Query: 83 QKKVRNVSSVAMRIAQKVDYISHDVISVGIPFPSIQD--ENVKLKRSYNDTHAQKKGI-- 138
+ + NV QK + + +D V + F + E+V ++ + T ++ +
Sbjct: 418 KNWMENV--------QKKNELINDRYDVMMEFQLLLQNFESVTIEVVNSSTQGARRKMYE 469
Query: 139 ---PFPSIQDEKVKLKRSYNDTHAQKKVRN 165
F + ++E ++ +RS D + + N
Sbjct: 470 DAQTFFAGRNESIQKQRSIEDIQLEDPIEN 499
>gi|209878272|ref|XP_002140577.1| DNA repair helicase family protein [Cryptosporidium muris RN66]
gi|209556183|gb|EEA06228.1| DNA repair helicase family protein [Cryptosporidium muris RN66]
Length = 1091
Score = 35.8 bits (81), Expect = 9.0, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 32/148 (21%)
Query: 50 NNAEIQGAIHALKQAKSANEKVKLKRSYND-----THAQKKVRNVSSVAM-----RIAQK 99
N+ E+ + + K K +K + D T+ KK N S+ + +I++
Sbjct: 682 NSYELNSILESYKGCIELKSKNNVKSNSLDKLTDFTNITKKCANFGSLLIAVCRGKISEG 741
Query: 100 VDY---ISHDVISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYND 156
+D+ VI G+PFPSI D V LK+ Y D + ++ +R YN
Sbjct: 742 IDFSDDTCRGVIIAGMPFPSIADPRVCLKKQYMDEY--------------RMDSRRWYN- 786
Query: 157 THAQKKVRNVSSVAMRIAQ-KVDYKLLV 183
Q+ +R V+ R+ + ++DY ++
Sbjct: 787 ---QQAIRAVNQAVGRVVRHRLDYGAVI 811
>gi|347829614|emb|CCD45311.1| hypothetical protein [Botryotinia fuckeliana]
Length = 264
Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAI 58
+D +HVV D AC G+ A YGVY G+ P +V+ V + T AE+
Sbjct: 73 IDEGSHVVAI-DSACKTTGQEATRAAYGVYRGDTTPCSVSKLVDEHLPQTTQVAELLAVR 131
Query: 59 HALKQAKSANEKVKLKRSYNDTHAQKKVRNVSSVAM 94
K A+S + + R +D K VS + +
Sbjct: 132 TVFKLAESVLDAY-IARGGSDEGEHKDAARVSKILI 166
>gi|328772350|gb|EGF82388.1| hypothetical protein BATDEDRAFT_22849 [Batrachochytrium
dendrobatidis JAM81]
Length = 996
Score = 35.8 bits (81), Expect = 9.4, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 26 GYGVYFGENNPLNVAGKVTGRVTNN--NAEIQGAIHALK----QAKSANEKVKLKRSYND 79
G V+F + +N V + +N+ + I +I LK ++++ E V +S+ +
Sbjct: 493 GMLVFFTSYSIMNTCISVWKQPSNDLISKSIWESISELKYPIMESRNQQEFVLAMKSFEE 552
Query: 80 THAQKKVRNVSSVAM---RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHA 133
QKK A+ R+++ +D+ V+ GIP+P+ +D NV LK+ Y D+ A
Sbjct: 553 RIDQKKWPPPIFFAICRGRVSEGIDFSDRKGRAVVIYGIPYPTYKDPNVMLKQKYLDSAA 612
Query: 134 QK 135
K
Sbjct: 613 AK 614
>gi|146421520|ref|XP_001486705.1| hypothetical protein PGUG_00082 [Meyerozyma guilliermondii ATCC
6260]
Length = 260
Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 9 VFTDGACPRNGKV-GASAGYGVYFGENNPLNVA---GKV----TGRVTNNNAEIQGAIHA 60
++ DGA NGKV +GYGV++GE + N A KV TG TN AE+ HA
Sbjct: 97 IYVDGAARGNGKVRSPKSGYGVFYGEGDERNAAVPLSKVDSDRTG--TNQRAELHALNHA 154
Query: 61 L 61
L
Sbjct: 155 L 155
>gi|190344328|gb|EDK35984.2| hypothetical protein PGUG_00082 [Meyerozyma guilliermondii ATCC
6260]
Length = 260
Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 9 VFTDGACPRNGKV-GASAGYGVYFGENNPLNVA---GKV----TGRVTNNNAEIQGAIHA 60
++ DGA NGKV +GYGV++GE + N A KV TG TN AE+ HA
Sbjct: 97 IYVDGAARGNGKVRSPKSGYGVFYGEGDERNAAVPLSKVDSDRTG--TNQRAELHALNHA 154
Query: 61 L 61
L
Sbjct: 155 L 155
>gi|220931738|ref|YP_002508646.1| Ribonuclease H [Halothermothrix orenii H 168]
gi|219993048|gb|ACL69651.1| Ribonuclease H [Halothermothrix orenii H 168]
Length = 269
Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M+P + V+TDGAC N G A V + VAG TNN E++ I A
Sbjct: 124 MEP---IKVYTDGACSGNPGPGGYAA--VILNQGQERVVAG-YEDETTNNRMELRAVIEA 177
Query: 61 LKQAKSANE 69
LK+ K E
Sbjct: 178 LKEIKEGRE 186
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,023,205,936
Number of Sequences: 23463169
Number of extensions: 118098845
Number of successful extensions: 247582
Number of sequences better than 100.0: 840
Number of HSP's better than 100.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 362
Number of HSP's that attempted gapping in prelim test: 246657
Number of HSP's gapped (non-prelim): 1078
length of query: 191
length of database: 8,064,228,071
effective HSP length: 134
effective length of query: 57
effective length of database: 9,215,130,721
effective search space: 525262451097
effective search space used: 525262451097
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 72 (32.3 bits)