BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy874
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5BK46|RNH1_RAT Ribonuclease H1 OS=Rattus norvegicus GN=Rnaseh1 PE=2 SV=1
Length = 285
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAITQAKA 198
Query: 67 AN 68
N
Sbjct: 199 QN 200
>sp|O70338|RNH1_MOUSE Ribonuclease H1 OS=Mus musculus GN=Rnaseh1 PE=2 SV=1
Length = 285
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAKA 198
Query: 67 AN-EKVKLKRSYNDT-----------HAQKKVRNVSSVAMRIAQKVDYISHDVISVGI 112
N K+ L Y D+ KK +S + K D++ D ++ G+
Sbjct: 199 QNISKLVL---YTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGM 253
>sp|O60930|RNH1_HUMAN Ribonuclease H1 OS=Homo sapiens GN=RNASEH1 PE=1 SV=2
Length = 286
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSAN 68
K+ N
Sbjct: 198 KTQN 201
>sp|Q9UST8|RNH1_SCHPO Ribonuclease H OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rnh1 PE=1 SV=1
Length = 264
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
VV+ DG+ RNGK GA AG GV+FG ++P N++ + G TNN AE+Q I AL+
Sbjct: 125 VVYADGSSLRNGKKGAVAGCGVFFGNDDPRNISVPLAGEEQTNNRAELQAIILALE 180
>sp|Q5SXJ3|FANCJ_MOUSE Fanconi anemia group J protein homolog OS=Mus musculus GN=Brip1
PE=2 SV=1
Length = 1174
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI+VGIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 782 VITVGIPFPNVKDLQVELKRQYNDHHSKSRGL-LPGRQWYEIQAYRALN 829
Score = 39.3 bits (90), Expect = 0.016, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+++D +V+LKR YND H++ +
Sbjct: 786 GIPFPNVKDLQVELKRQYNDHHSKSR 811
>sp|Q3YK19|FANCJ_CHICK Fanconi anemia group J protein homolog OS=Gallus gallus GN=BRIP1
PE=2 SV=1
Length = 1252
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + VI++GIPFP+++D V+LKR YND H +G+ P Q +++
Sbjct: 774 KVSEGLDFCDENARAVITIGIPFPNVKDLQVELKRKYNDQHKTTRGL-LPGSQWYEIQAY 832
Query: 152 RSYN 155
R+ N
Sbjct: 833 RALN 836
Score = 37.7 bits (86), Expect = 0.046, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQKK 162
GIPFP+++D +V+LKR YND H +
Sbjct: 793 GIPFPNVKDLQVELKRKYNDQHKTTR 818
>sp|Q9BX63|FANCJ_HUMAN Fanconi anemia group J protein OS=Homo sapiens GN=BRIP1 PE=1 SV=1
Length = 1249
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 107 VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++ R+ N
Sbjct: 779 VITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAYRALN 826
Score = 38.5 bits (88), Expect = 0.026, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 137 GIPFPSIQDEKVKLKRSYNDTHAQ 160
GIPFP+++D +V+LKR YND H++
Sbjct: 783 GIPFPNVKDLQVELKRQYNDHHSK 806
>sp|Q07762|RNH1_CRIFA Ribonuclease H OS=Crithidia fasciculata GN=RNH1 PE=3 SV=1
Length = 494
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNP---LNVAGKVTGRVTNNNAEIQGAIHALKQ 63
VV+ DGAC NG A AGYG ++G + ++ +T TNN E++ IH + Q
Sbjct: 277 VVYVDGACSHNGTPKARAGYGGFYGSTSDSRNFSLPVPITEAQTNNRGEMRAVIHCIVQ 335
>sp|Q04740|RNH1_YEAST Ribonuclease H OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RNH1 PE=1 SV=2
Length = 348
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQGAIHALKQ--AK 65
V+ DG+ NG + AGYG YF N++ ++G TNN AEI+ ALK+ K
Sbjct: 190 VYCDGSSFGNGTSSSRAGYGAYFEGAPEENISEPLLSGAQTNNRAEIEAVSEALKKIWEK 249
Query: 66 SANEKVKL 73
NEK K+
Sbjct: 250 LTNEKEKV 257
>sp|Q2LWY9|RNH_SYNAS Ribonuclease H OS=Syntrophus aciditrophicus (strain SB) GN=rnhA
PE=3 SV=1
Length = 173
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGV--YFGENN-PLNVAGKVTGRVTNNNAEIQGAI 58
DP V+++TDGAC N G GYGV +GE+ L+ ++T TNN EI AI
Sbjct: 19 DPQKQVIIYTDGACLGNPGPG---GYGVVLLYGEHRKELSGGYRLT---TNNRMEILAAI 72
Query: 59 HALKQAKSA 67
L+ KSA
Sbjct: 73 KGLEALKSA 81
>sp|A5CX29|RNH_VESOH Ribonuclease H OS=Vesicomyosocius okutanii subsp. Calyptogena
okutanii (strain HA) GN=rnhA PE=3 SV=1
Length = 148
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 28/124 (22%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTG---RVTNNNAEIQGAIH 59
N +V++TDG C N +G G+GV+ +G+ + K+ G + TNN E+ I
Sbjct: 3 NRIVIYTDGGCRCNTGIG---GWGVWLKYGDYDK-----KLKGNEKKTTNNRMELTATIK 54
Query: 60 ALKQAKSANEKVKL-------KRSYNDTHAQKKVRNVSSVAMR------IAQKVDYIS-- 104
AL++ KS + L N+ KV+N + R + Q++D ++
Sbjct: 55 ALEEIKSNQIGIDLFTDSKYVITGINEWMKNWKVKNWETSKKRPVKNVDLWQRLDVLNKQ 114
Query: 105 HDVI 108
HDVI
Sbjct: 115 HDVI 118
>sp|Q72IE1|RNH_THET2 Ribonuclease H OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=rnhA PE=3 SV=1
Length = 166
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P V +FTDGAC N G A + F + L G+ TNN E++ AI LK
Sbjct: 5 PRKRVALFTDGACLGNPGPGGWAAL-LRFNAHEKLLSGGEAC--TTNNRMELKAAIEGLK 61
Query: 63 QAKSANEKVKLKRSYNDTHAQKKV 86
K E V L Y D+H KK
Sbjct: 62 ALKEPCE-VDL---YTDSHYLKKA 81
>sp|P29253|RNH_THET8 Ribonuclease H OS=Thermus thermophilus (strain HB8 / ATCC 27634 /
DSM 579) GN=rnhA PE=1 SV=2
Length = 166
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P V +FTDGAC N G A + F + L G+ TNN E++ AI LK
Sbjct: 5 PRKRVALFTDGACLGNPGPGGWAAL-LRFHAHEKLLSGGEAC--TTNNRMELKAAIEGLK 61
Query: 63 QAKSANEKVKLKRSYNDTHAQKKV 86
K E V L Y D+H KK
Sbjct: 62 ALKEPCE-VDL---YTDSHYLKKA 81
>sp|Q2GHJ9|RNH_EHRCR Ribonuclease H OS=Ehrlichia chaffeensis (strain Arkansas) GN=rnhA
PE=3 SV=1
Length = 146
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D N VV++TDGAC N G A V ++N + G TNN E+ I AL
Sbjct: 3 DELNKVVIYTDGACSGNPGPGGWA--AVLLFDDNEKTICGN-DSDTTNNRMELTAVIEAL 59
Query: 62 KQAKSA 67
K K A
Sbjct: 60 KLLKVA 65
>sp|B8HPS9|RNH_CYAP4 Ribonuclease H OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141)
GN=rnhA PE=3 SV=1
Length = 157
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++TDGAC N G G+GV YFG+ + ++ G TNN E+Q AI AL+ ++
Sbjct: 8 IYTDGACSGNPGPG---GWGVVVYFGDGS-VHEMGGAAAATTNNRMEMQAAIAALEFCQA 63
Query: 67 A 67
A
Sbjct: 64 A 64
>sp|Q2KBL2|RNH_RHIEC Ribonuclease H OS=Rhizobium etli (strain CFN 42 / ATCC 51251)
GN=rnhA PE=3 SV=1
Length = 151
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + +GE G+ TNN E+ AI AL+
Sbjct: 3 HVDIFTDGACSGNPGPG---GWGAVLRYGEVEKELCGGEA--ETTNNRMELMAAISALQA 57
Query: 64 AKSANE 69
KS E
Sbjct: 58 LKSPCE 63
>sp|Q55801|RNH_SYNY3 Ribonuclease HI OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=rnhA PE=3 SV=1
Length = 160
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 5 NHVVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
N V ++TDGAC P G GA YG G L+ K+T TNN EI GAI AL
Sbjct: 6 NSVTLYTDGACSMNPGPGGYGAVILYGD--GRREELSAGYKMT---TNNRMEIMGAIAAL 60
>sp|Q1QH30|RNH_NITHX Ribonuclease H OS=Nitrobacter hamburgensis (strain X14 / DSM
10229) GN=rnhA PE=3 SV=1
Length = 151
Score = 37.0 bits (84), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + FGE G+ TNN E+ AI AL+
Sbjct: 8 HVTIFTDGACSGNPGPG---GWGAILRFGEIEKELKGGEP--HTTNNRMELLAAISALEA 62
Query: 64 AKSA 67
K A
Sbjct: 63 LKKA 66
>sp|A1AW38|RNH_RUTMC Ribonuclease H OS=Ruthia magnifica subsp. Calyptogena magnifica
GN=rnhA PE=3 SV=1
Length = 146
Score = 37.0 bits (84), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N ++++TDG C N +G G+GV+ + V TNN E+ I AL+
Sbjct: 2 NKIIIYTDGGCRGNPGIG---GWGVWLKYGDYDKKLQGVQQDTTNNQMELTATIKALEVI 58
Query: 65 KSANEKVKL--KRSYNDTHAQKKVRNVSSVAMRIAQK 99
KS + + L Y T + ++N + + A K
Sbjct: 59 KSNDIAIDLFTDSKYVITGISEWIKNWKAKGWKTANK 95
>sp|B6JJ39|RNH_OLICO Ribonuclease H OS=Oligotropha carboxidovorans (strain ATCC 49405
/ DSM 1227 / OM5) GN=rnhA PE=3 SV=1
Length = 149
Score = 36.6 bits (83), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HVV+FTDGAC N G G+G + FGE G+ TNN E+ AI AL+
Sbjct: 8 HVVIFTDGACSGNPGPG---GWGAILRFGEIEKELKGGE--NPTTNNRMELLAAISALEA 62
Query: 64 AK 65
K
Sbjct: 63 LK 64
>sp|Q8UHA7|RNH_AGRT5 Ribonuclease H OS=Agrobacterium tumefaciens (strain C58 / ATCC
33970) GN=rnhA PE=3 SV=1
Length = 146
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + +GE G+ TNN E+ AI AL
Sbjct: 3 HVDIFTDGACSGNPGPG---GWGAVLRYGETEKELSGGEAD--TTNNRMELLAAISALNA 57
Query: 64 AKSANE 69
KS E
Sbjct: 58 LKSPCE 63
>sp|Q67K93|RNH_SYMTH Ribonuclease H OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=rnhA PE=3 SV=1
Length = 147
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 13/77 (16%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V+++TDGAC P G GA YG + E + + TNN EIQ AI AL+
Sbjct: 4 VIIYTDGACSGNPGPGGWGAVLLYGSHRKELSGFHP------HTTNNRMEIQAAIEALRA 57
Query: 64 AKSANEKVKLKRSYNDT 80
K KVKL Y+D+
Sbjct: 58 LKYPC-KVKL---YSDS 70
>sp|Q0AV47|RNH_SYNWW Ribonuclease H OS=Syntrophomonas wolfei subsp. wolfei (strain
Goettingen) GN=rnhA PE=3 SV=1
Length = 146
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 6 HVVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
++++TDGAC P G GA YG + E +AG TN E+ I ALK
Sbjct: 3 EIIIYTDGACSGNPGPGGWGAVLAYGEHQKE-----IAG-AEADTTNQRMELMAVIEALK 56
Query: 63 QAKSANEKVKLKRSYNDT----HAQKK--VRNVSSVAMRIAQKVDYISHDVISVGIPF 114
K + ++ R Y+D+ +A +K + N + ++K D + D+ IP
Sbjct: 57 AIKGSGWEI---RVYSDSAYFINAIQKGWLENWQRNGWKNSKKEDVANQDLWKALIPL 111
>sp|Q6G0C8|RNH_BARQU Ribonuclease H OS=Bartonella quintana (strain Toulouse) GN=rnhA
PE=3 SV=1
Length = 155
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N VG + G L +G+V + TNN E+ AI ALK K
Sbjct: 8 VEIYTDGACSGNPGVGGWGAILRWNGHEREL-YSGEV--QTTNNRMELMAAICALKVLKE 64
Query: 67 A 67
A
Sbjct: 65 A 65
>sp|Q3YR62|RNH_EHRCJ Ribonuclease H OS=Ehrlichia canis (strain Jake) GN=rnhA PE=3 SV=1
Length = 146
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYG-VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
D N VV++TDGAC N G G+G + + N + G TNN E+ I A
Sbjct: 3 DELNKVVIYTDGACSGNPGPG---GWGAILLFDKNERTICGN-NPDTTNNRMELTAVIEA 58
Query: 61 LKQAKSA 67
LK K A
Sbjct: 59 LKFLKVA 65
>sp|Q3J7D4|RNH_NITOC Ribonuclease H OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=rnhA PE=3 SV=1
Length = 147
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDGAC N G Y G L+ A + TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGACRGNPGPGGWGALLCYQGREKTLSGA---ESKTTNNRMELMAAIRALETLK 60
>sp|A5G5F6|RNH_GEOUR Ribonuclease H OS=Geobacter uraniireducens (strain Rf4) GN=rnhA
PE=3 SV=1
Length = 147
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +F DGAC N VG G+G + + G TNN E+ AI AL K
Sbjct: 3 VEIFCDGACSGNPGVG---GWGSILRYGDTVKELSGADGDTTNNRMEMTAAIEALASLKR 59
Query: 67 ANEKV 71
E V
Sbjct: 60 PCEVV 64
>sp|B4R8T3|RNH_PHEZH Ribonuclease H OS=Phenylobacterium zucineum (strain HLK1) GN=rnhA
PE=3 SV=1
Length = 153
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAI 58
M P+ VV++TDGAC N G G+G GE G+ TNN E+ AI
Sbjct: 1 MTPE--VVIYTDGACSGNPGPG---GWGAILIHGEREKELCGGEAA--TTNNRMELMAAI 53
Query: 59 HALKQAK 65
AL+ K
Sbjct: 54 QALEALK 60
>sp|Q8DM24|RNH_THEEB Ribonuclease H OS=Thermosynechococcus elongatus (strain BP-1)
GN=rnhA PE=3 SV=1
Length = 159
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
++TDGAC N G G+GV YF + + + G TNN E+Q AI ALK +
Sbjct: 7 IYTDGACEGNPGPG---GWGVVIYFTDGSVHELGGHHPA-TTNNRMELQAAIEALKAWR 61
>sp|Q2SJ45|RNH_HAHCH Ribonuclease H OS=Hahella chejuensis (strain KCTC 2396) GN=rnhA
PE=3 SV=1
Length = 148
Score = 35.4 bits (80), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V ++TDGAC +N G G+G + +G+N G++ TNN E+ AI AL+
Sbjct: 4 VEIYTDGACKKNPGPG---GWGAILIYGKNEKEIYGGELD--TTNNRMELMAAIEALRAL 58
Query: 65 KSANEKVKLKRSYNDTHAQKK 85
K KV+L Y D+ +K
Sbjct: 59 KQGC-KVEL---YTDSQYVRK 75
>sp|B4S5K2|RNH_PROA2 Ribonuclease H OS=Prosthecochloris aestuarii (strain DSM 271 / SK
413) GN=rnhA PE=3 SV=1
Length = 146
Score = 35.4 bits (80), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 7 VVVFTDGACPRN-GKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
++++TDGAC N GK G A + FGE N ++G + TNN E+ AI AL+ K
Sbjct: 5 IIIYTDGACSGNPGKGGWGA--LLMFGELNR-EISG-YSPATTNNRMELMAAIQALEALK 60
>sp|B0TZ91|RNH_FRAP2 Ribonuclease H OS=Francisella philomiragia subsp. philomiragia
(strain ATCC 25017) GN=rnhA PE=3 SV=1
Length = 152
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N+V+ +TDGAC N +G Y G + ++ A K T TNN E+ AI L+
Sbjct: 8 NNVIAYTDGACKGNPGIGGWGAILSYNGVDKEISGAEKDT---TNNRMELMAAIKTLQAL 64
Query: 65 K 65
K
Sbjct: 65 K 65
>sp|Q8RA67|RNH_THETN Ribonuclease H OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=rnhA PE=3
SV=1
Length = 153
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 1 MDPDNHVV-VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG---RVTNNNAEIQG 56
M +N +V ++TDGAC N G A +Y G + +++G TNN E++
Sbjct: 1 MKNNNEIVEIYTDGACSGNPGPGGWAAVLIYKG------IKKEISGFEENTTNNRMELKA 54
Query: 57 AIHALKQAK 65
AI LK K
Sbjct: 55 AIEGLKALK 63
>sp|A3DD79|RNH_CLOTH Ribonuclease H OS=Clostridium thermocellum (strain ATCC 27405 /
DSM 1237) GN=rnhA PE=3 SV=1
Length = 147
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V ++TDGAC P +G GA YG N+ V+G TNN E+ AI+ALK
Sbjct: 4 VSIYTDGACSGNPGDGGWGAILIYG-----NHEKEVSG-FEKDTTNNRMELVAAINALKM 57
Query: 64 AKSANE 69
K E
Sbjct: 58 LKEPCE 63
>sp|Q1MKH6|RNH_RHIL3 Ribonuclease H OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=rnhA PE=3 SV=1
Length = 151
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 32/70 (45%), Gaps = 15/70 (21%)
Query: 6 HVVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTG---RVTNNNAEIQGAIH 59
HV +FTDGAC P G GA YG +V ++ G TNN E+ AI
Sbjct: 3 HVDIFTDGACSGNPGPGGWGAVLRYG---------DVEKELCGGEADTTNNRMELLAAIS 53
Query: 60 ALKQAKSANE 69
AL KS E
Sbjct: 54 ALSALKSPCE 63
>sp|Q2Y8K1|RNH_NITMU Ribonuclease H OS=Nitrosospira multiformis (strain ATCC 25196 /
NCIMB 11849) GN=rnhA PE=3 SV=1
Length = 155
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
V +FTDGAC N VG Y G L K+T TNN E+ I AL+
Sbjct: 9 VEIFTDGACKGNPGVGGWGALLQYNGHRRELFGGEKMT---TNNRMELLAVIRALE 61
>sp|Q0AE34|RNH_NITEC Ribonuclease H OS=Nitrosomonas eutropha (strain C91) GN=rnhA PE=3
SV=1
Length = 162
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +FTDGAC N G G+GV + GE VT TNN E+ AI AL++
Sbjct: 10 VEIFTDGACKGNPGPG---GWGVCLHFNGETREFFGGEPVT---TNNRMELLAAIRALQE 63
Query: 64 AKS 66
+S
Sbjct: 64 LES 66
>sp|Q2G9E3|RNH_NOVAD Ribonuclease H OS=Novosphingobium aromaticivorans (strain DSM
12444) GN=rnhA PE=3 SV=1
Length = 143
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G GE+ +AG TNN E+ AI AL+
Sbjct: 3 HVEIFTDGACKGNPGKG---GWGALLRMGEHEK-EMAGS-EKETTNNRMELMAAIRALEA 57
Query: 64 AK 65
K
Sbjct: 58 LK 59
>sp|A8WS58|RTEL1_CAEBR Regulator of telomere elongation helicase 1 homolog
OS=Caenorhabditis briggsae GN=rtel-1 PE=3 SV=1
Length = 994
Score = 34.7 bits (78), Expect = 0.36, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 95 RIAQKVDYI---SHDVISVGIPFPSIQDENVKLKRSYNDTHAQKKGI 138
++++ +D+ S VI VGIP+P I DE V LK+ Y D +K +
Sbjct: 642 KVSEGIDFCDAESRAVIIVGIPYPPIHDERVVLKKMYLDDLMGRKDL 688
>sp|B5EMD8|RNH_ACIF5 Ribonuclease H OS=Acidithiobacillus ferrooxidans (strain ATCC
53993) GN=rnhA PE=3 SV=1
Length = 158
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P+ + +FTDG C N +GA +GV+ V TNN E+ A+ L+
Sbjct: 2 PEKIIELFTDGGCRGNPGIGA---WGVWLRLAGQERVLWGFVPETTNNRMELTAALRGLE 58
Query: 63 QAK 65
K
Sbjct: 59 ALK 61
>sp|B7J4E2|RNH_ACIF2 Ribonuclease H OS=Acidithiobacillus ferrooxidans (strain ATCC
23270 / DSM 14882 / NCIB 8455) GN=rnhA PE=3 SV=1
Length = 158
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P+ + +FTDG C N +GA +GV+ V TNN E+ A+ L+
Sbjct: 2 PEKIIELFTDGGCRGNPGIGA---WGVWLRLAGQERVLWGFVPETTNNRMELTAALRGLE 58
Query: 63 QAK 65
K
Sbjct: 59 ALK 61
>sp|A0LGJ7|RNH_SYNFM Ribonuclease H OS=Syntrophobacter fumaroxidans (strain DSM 10017
/ MPOB) GN=rnhA PE=3 SV=1
Length = 164
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HV +F DGAC N G Y G+ L+ + T TNN E+ I AL+ K
Sbjct: 16 HVEIFADGACRGNPGPGGWGAVLRYHGKEKELSGYAEYT---TNNQMELAAVIQALRALK 72
Query: 66 S 66
Sbjct: 73 E 73
>sp|Q74BH0|RNH_GEOSL Ribonuclease H OS=Geobacter sulfurreducens (strain ATCC 51573 /
DSM 12127 / PCA) GN=rnhA PE=3 SV=1
Length = 149
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
V VF DGAC N VG GYG + G TNN E+ AI AL+
Sbjct: 4 EVEVFCDGACSGNPGVG---GYGAILRYGSAEKELSGADGDTTNNRMELTAAIRALE 57
>sp|A4VLR0|RNH_PSEU5 Ribonuclease H OS=Pseudomonas stutzeri (strain A1501) GN=rnhA
PE=3 SV=1
Length = 151
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D+ V ++TDGAC N G +Y G L T TNN E+ AI AL +
Sbjct: 3 DDWVEIYTDGACKGNPGPGGWGALLIYKGVKRELWGGEPDT---TNNRMELMAAIRALAE 59
Query: 64 AKSANEKVKL 73
K KV+L
Sbjct: 60 LKRPC-KVRL 68
>sp|Q82XV8|RNH_NITEU Ribonuclease H OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=rnhA PE=3 SV=1
Length = 161
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +FTDGAC N +G G+GV + GE VT TNN E+ AI AL+
Sbjct: 10 VEIFTDGACKGNPGIG---GWGVCLKFDGEVREFFGGEPVT---TNNRMELLAAIRALQA 63
Query: 64 AKS 66
+S
Sbjct: 64 LES 66
>sp|A1BE10|RNH_CHLPD Ribonuclease H OS=Chlorobium phaeobacteroides (strain DSM 266)
GN=rnhA PE=3 SV=1
Length = 146
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
++V+TDGAC P G GA YG E ++G + TNN E+ AI AL+
Sbjct: 5 IIVYTDGACSGNPGKGGWGALLMYGASTRE-----ISG-YSPATTNNRMELSAAIEALET 58
Query: 64 AK 65
K
Sbjct: 59 LK 60
>sp|A5EXP9|RNH_DICNV Ribonuclease H OS=Dichelobacter nodosus (strain VCS1703A) GN=rnhA
PE=3 SV=1
Length = 150
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
+F DGAC N +G G+GV V TNN E+ AI ALK K
Sbjct: 8 IFVDGACKGNPGIG---GWGVLMRYGQHEKVLMGAQWHTTNNRMELTAAIEALKAIK 61
>sp|Q48KX6|RNH_PSE14 Ribonuclease H OS=Pseudomonas syringae pv. phaseolicola (strain
1448A / Race 6) GN=rnhA PE=3 SV=1
Length = 149
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V+ G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVFKGVEKEL-WGGEAN--TTNNRMELTGAIRGLEEL 59
Query: 65 KSANE 69
K E
Sbjct: 60 KRPCE 64
>sp|A1U0U9|RNH_MARAV Ribonuclease H OS=Marinobacter aquaeolei (strain ATCC 700491 /
DSM 11845 / VT8) GN=rnhA PE=3 SV=1
Length = 147
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
VV++TDGAC N G G+GV +G+ G++ + TNN E+ AI L++
Sbjct: 5 VVMYTDGACKGNPGPG---GWGVVLRYGDACKTMHGGEL--QTTNNRMELMAAIRGLREL 59
Query: 65 KSA 67
K A
Sbjct: 60 KRA 62
>sp|A6V705|RNH_PSEA7 Ribonuclease H OS=Pseudomonas aeruginosa (strain PA7) GN=rnhA
PE=3 SV=1
Length = 148
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M VV++TDGAC N G +Y G L T TNN E+ AI A
Sbjct: 1 MTDKEQVVIYTDGACKGNPGRGGWGALLLYKGAERELWGGEPDT---TNNRMELMAAIQA 57
Query: 61 LKQAK 65
L K
Sbjct: 58 LAALK 62
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,659,121
Number of Sequences: 539616
Number of extensions: 2885147
Number of successful extensions: 6270
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 6189
Number of HSP's gapped (non-prelim): 220
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)