Your job contains 1 sequence.
>psy874
MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA
LKQAKSANEKVKLKRSYNDTHAQKKVRNVSSVAMRIAQKVDYISHDVISVGIPFPSIQDE
NVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYNDTHAQKKVRNVSSVAMRIAQKVDYK
LLVSGYFGEHL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy874
(191 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0023171 - symbol:rnh1 "ribonuclease H1" species:72... 220 3.7e-18 1
ZFIN|ZDB-GENE-040718-407 - symbol:rnaseh1 "ribonuclease H... 185 1.8e-14 1
UNIPROTKB|F1NN23 - symbol:RNASEH1 "Uncharacterized protei... 167 2.9e-12 1
UNIPROTKB|F1N2X2 - symbol:RNASEH1 "Uncharacterized protei... 164 5.3e-12 1
RGD|1309012 - symbol:Rnaseh1 "ribonuclease H1" species:10... 164 5.7e-12 1
MGI|MGI:1335073 - symbol:Rnaseh1 "ribonuclease H1" specie... 163 7.6e-12 1
UNIPROTKB|J9NUL8 - symbol:RNASEH1 "Uncharacterized protei... 162 9.8e-12 1
UNIPROTKB|E2R8B0 - symbol:RNASEH1 "Uncharacterized protei... 162 1.0e-11 1
UNIPROTKB|O60930 - symbol:RNASEH1 "Ribonuclease H1" speci... 160 1.7e-11 1
UNIPROTKB|I3LTQ9 - symbol:RNASEH1 "Uncharacterized protei... 160 1.7e-11 1
WB|WBGene00004382 - symbol:rnh-1.0 species:6239 "Caenorha... 139 5.1e-09 1
POMBASE|SPBC336.06c - symbol:rnh1 "ribonuclease H Rnh1 (p... 134 1.0e-07 1
CGD|CAL0006207 - symbol:orf19.5564 species:5476 "Candida ... 122 4.3e-06 1
UNIPROTKB|Q5ABY6 - symbol:RNH12 "Putative uncharacterized... 122 4.3e-06 1
WB|WBGene00007303 - symbol:rnh-1.3 species:6239 "Caenorha... 99 0.00016 1
CGD|CAL0000560 - symbol:orf19.5614 species:5476 "Candida ... 110 0.00027 1
UNIPROTKB|Q5ABT7 - symbol:RNH11 "Putative uncharacterized... 110 0.00027 1
MGI|MGI:2442836 - symbol:Brip1 "BRCA1 interacting protein... 115 0.00051 1
ASPGD|ASPL0000032202 - symbol:AN5188 species:162425 "Emer... 110 0.00063 1
UNIPROTKB|G3N0I3 - symbol:BRIP1 "Uncharacterized protein"... 112 0.00071 1
UNIPROTKB|E1C1X9 - symbol:BRIP1 "Fanconi anemia group J p... 114 0.00072 1
UNIPROTKB|Q3YK19 - symbol:BRIP1 "Fanconi anemia group J p... 114 0.00073 1
RGD|1307659 - symbol:Brip1 "BRCA1 interacting protein C-t... 112 0.00078 1
UNIPROTKB|J3QSE8 - symbol:BRIP1 "Fanconi anemia group J p... 112 0.00098 1
>FB|FBgn0023171 [details] [associations]
symbol:rnh1 "ribonuclease H1" species:7227 "Drosophila
melanogaster" [GO:0004523 "ribonuclease H activity"
evidence=ISS;IDA] [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR002156
InterPro:IPR012337 InterPro:IPR017067 Pfam:PF00075
PIRSF:PIRSF036852 PROSITE:PS50879 GO:GO:0000287 GO:GO:0003676
SUPFAM:SSF53098 Gene3D:3.40.970.10 InterPro:IPR011320 GO:GO:0004523
InterPro:IPR009027 SUPFAM:SSF55658 Pfam:PF01693 FlyBase:FBgn0023171
EMBL:AF032921 PIR:JC5787 HSSP:Q04740 ProteinModelPortal:O44114
STRING:O44114 PRIDE:O44114 InParanoid:O44114 ArrayExpress:O44114
Bgee:O44114 Uniprot:O44114
Length = 333
Score = 220 (82.5 bits), Expect = 3.7e-18, P = 3.7e-18
Identities = 64/169 (37%), Positives = 95/169 (56%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V+V+TDG+C NG+ GA AGYGVYFG+N+ LN A V GRVTNN EIQ AIHA
Sbjct: 176 IDAEGYVIVYTDGSCIGNGRTGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHA 235
Query: 61 LKQAKSANEKVKLKRSYNDTHAQKKVRNVSSVAMRIA--QKVDYI--SHDVISVGIPFPS 116
+K A + KL S T +Q + +S+ + +A +K D+ ++ + + F
Sbjct: 236 IKTALDLGIQ-KLCIS---TDSQFLI---NSITLWVAGWKKRDWKLKNNQPVKNVVDFKE 288
Query: 117 I----QDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYNDTHAQK 161
+ QD N+ +K +Y + H KGI + D KL R + + QK
Sbjct: 289 LDKLLQDNNITVKWNYVEAH---KGIEGNEMAD---KLARQGSALYKQK 331
>ZFIN|ZDB-GENE-040718-407 [details] [associations]
symbol:rnaseh1 "ribonuclease H1" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002156
InterPro:IPR012337 InterPro:IPR017067 Pfam:PF00075
PIRSF:PIRSF036852 PROSITE:PS50879 ZFIN:ZDB-GENE-040718-407
GO:GO:0000287 GO:GO:0003676 SUPFAM:SSF53098 EMBL:BX276180
Gene3D:3.40.970.10 InterPro:IPR011320 GO:GO:0004523
InterPro:IPR009027 SUPFAM:SSF55658 CTD:246243 HOGENOM:HOG000040465
HOVERGEN:HBG002135 KO:K03469 OMA:WRLKSGG Pfam:PF01693
GeneTree:ENSGT00390000003466 EMBL:BC076457 IPI:IPI00492798
RefSeq:NP_001002659.1 UniGene:Dr.16522 SMR:Q6DG94 STRING:Q6DG94
Ensembl:ENSDART00000062441 GeneID:436932 KEGG:dre:436932
InParanoid:Q6DG94 NextBio:20831359 Uniprot:Q6DG94
Length = 276
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 41/75 (54%), Positives = 51/75 (68%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NGK GA AG GVY+G ++P NVA ++ GR TN AE+Q A AL+QAK
Sbjct: 130 VVVYTDGCCSGNGKHGARAGIGVYWGRDHPRNVAERLPGRQTNQRAELQAACKALEQAKE 189
Query: 67 AN-EKVKLKRSYNDT 80
N +KV L Y D+
Sbjct: 190 MNFKKVVL---YTDS 201
>UNIPROTKB|F1NN23 [details] [associations]
symbol:RNASEH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004523
"ribonuclease H activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006264
"mitochondrial DNA replication" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] InterPro:IPR002156
InterPro:IPR012337 InterPro:IPR017067 Pfam:PF00075
PIRSF:PIRSF036852 PROSITE:PS50879 GO:GO:0005739 GO:GO:0005634
GO:GO:0000287 GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10
InterPro:IPR011320 GO:GO:0004523 GO:GO:0006264 InterPro:IPR009027
SUPFAM:SSF55658 Pfam:PF01693 GeneTree:ENSGT00390000003466
OMA:YEQSTNE EMBL:AADN02002886 IPI:IPI00582306
Ensembl:ENSGALT00000026438 Uniprot:F1NN23
Length = 293
Score = 167 (63.8 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 33/63 (52%), Positives = 43/63 (68%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+TDG C NG+ A AG GVY+G +PLN++ ++ GR TN AEI A A++QAKS
Sbjct: 148 VVYTDGCCSGNGRNRARAGIGVYWGPGHPLNISERLPGRQTNQRAEIHAACKAIEQAKSQ 207
Query: 68 NEK 70
N K
Sbjct: 208 NIK 210
>UNIPROTKB|F1N2X2 [details] [associations]
symbol:RNASEH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0006264 "mitochondrial DNA replication"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR002156 InterPro:IPR012337 InterPro:IPR017067
Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879 GO:GO:0005739
GO:GO:0005634 GO:GO:0000287 GO:GO:0003676 SUPFAM:SSF53098
Gene3D:3.40.970.10 InterPro:IPR011320 GO:GO:0004523 GO:GO:0006264
InterPro:IPR009027 SUPFAM:SSF55658 OMA:WRLKSGG Pfam:PF01693
GeneTree:ENSGT00390000003466 EMBL:DAAA02024811 EMBL:DAAA02024812
IPI:IPI00713771 Ensembl:ENSBTAT00000021600 Uniprot:F1N2X2
Length = 280
Score = 164 (62.8 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 37/74 (50%), Positives = 47/74 (63%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QAK
Sbjct: 134 VVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAK- 192
Query: 67 ANEKVKLKRSYNDT 80
A + KL Y D+
Sbjct: 193 AQDITKLVL-YTDS 205
>RGD|1309012 [details] [associations]
symbol:Rnaseh1 "ribonuclease H1" species:10116 "Rattus
norvegicus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004523
"ribonuclease H activity" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0006264 "mitochondrial DNA replication" evidence=IEA;ISO]
[GO:0042803 "protein homodimerization activity" evidence=IEA;ISO]
InterPro:IPR002156 InterPro:IPR012337 InterPro:IPR017067
Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879 RGD:1309012
GO:GO:0005739 GO:GO:0005634 GO:GO:0000287 GO:GO:0003676
GO:GO:0090305 SUPFAM:SSF53098 Gene3D:3.40.970.10 InterPro:IPR011320
GO:GO:0004523 GO:GO:0006264 InterPro:IPR009027 SUPFAM:SSF55658
CTD:246243 eggNOG:COG0328 HOGENOM:HOG000040465 HOVERGEN:HBG002135
KO:K03469 OMA:WRLKSGG Pfam:PF01693 OrthoDB:EOG47M1ZP EMBL:BC091209
IPI:IPI00365534 RefSeq:NP_001013115.1 UniGene:Rn.13139
ProteinModelPortal:Q5BK46 SMR:Q5BK46 STRING:Q5BK46 PRIDE:Q5BK46
Ensembl:ENSRNOT00000011819 GeneID:298933 KEGG:rno:298933
GeneTree:ENSGT00390000003466 InParanoid:Q5BK46 NextBio:644522
Genevestigator:Q5BK46 GermOnline:ENSRNOG00000008584 Uniprot:Q5BK46
Length = 285
Score = 164 (62.8 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAITQAKA 198
Query: 67 AN 68
N
Sbjct: 199 QN 200
>MGI|MGI:1335073 [details] [associations]
symbol:Rnaseh1 "ribonuclease H1" species:10090 "Mus
musculus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0006264 "mitochondrial DNA replication" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR017067 Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879
MGI:MGI:1335073 GO:GO:0005739 GO:GO:0005634 GO:GO:0042803
GO:GO:0000287 GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10
InterPro:IPR011320 GO:GO:0004523 GO:GO:0006264 CleanEx:MM_RNH1
InterPro:IPR009027 SUPFAM:SSF55658 eggNOG:COG0328
HOGENOM:HOG000040465 HOVERGEN:HBG002135 Pfam:PF01693 EMBL:AF048993
EMBL:BC019411 IPI:IPI00117308 UniGene:Mm.10152
ProteinModelPortal:O70338 SMR:O70338 STRING:O70338
PhosphoSite:O70338 PRIDE:O70338 UCSC:uc007nft.2 InParanoid:O70338
OrthoDB:EOG47M1ZP ChiTaRS:RNASEH1 CleanEx:MM_RNASEH1
Genevestigator:O70338 GermOnline:ENSMUSG00000020630 Uniprot:O70338
Length = 285
Score = 163 (62.4 bits), Expect = 7.6e-12, P = 7.6e-12
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAKA 198
Query: 67 AN 68
N
Sbjct: 199 QN 200
>UNIPROTKB|J9NUL8 [details] [associations]
symbol:RNASEH1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0004523 "ribonuclease H activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR002156 InterPro:IPR012337 InterPro:IPR017067
Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879 GO:GO:0000287
GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10 InterPro:IPR011320
GO:GO:0004523 InterPro:IPR009027 SUPFAM:SSF55658 CTD:246243
KO:K03469 Pfam:PF01693 GeneTree:ENSGT00390000003466
EMBL:AAEX03010655 RefSeq:XP_532858.2 ProteinModelPortal:J9NUL8
Ensembl:ENSCAFT00000044124 GeneID:475648 KEGG:cfa:475648
Uniprot:J9NUL8
Length = 285
Score = 162 (62.1 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 37/74 (50%), Positives = 47/74 (63%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +P NV ++ GR TN AEI A A++QAK+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPWNVGIRLPGRQTNQRAEIHAACKAIEQAKA 198
Query: 67 ANEKVKLKRSYNDT 80
N K KL Y D+
Sbjct: 199 QNIK-KLVL-YTDS 210
>UNIPROTKB|E2R8B0 [details] [associations]
symbol:RNASEH1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0004523 "ribonuclease H activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR002156 InterPro:IPR012337 InterPro:IPR017067
Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879 GO:GO:0000287
GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10 InterPro:IPR011320
GO:GO:0004523 InterPro:IPR009027 SUPFAM:SSF55658 Pfam:PF01693
GeneTree:ENSGT00390000003466 EMBL:AAEX03010655
Ensembl:ENSCAFT00000005229 OMA:YEQSTNE NextBio:20851446
Uniprot:E2R8B0
Length = 288
Score = 162 (62.1 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 37/74 (50%), Positives = 47/74 (63%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +P NV ++ GR TN AEI A A++QAK+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPWNVGIRLPGRQTNQRAEIHAACKAIEQAKA 198
Query: 67 ANEKVKLKRSYNDT 80
N K KL Y D+
Sbjct: 199 QNIK-KLVL-YTDS 210
>UNIPROTKB|O60930 [details] [associations]
symbol:RNASEH1 "Ribonuclease H1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006264 "mitochondrial DNA replication" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=TAS] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0004540 "ribonuclease activity"
evidence=TAS] [GO:0006401 "RNA catabolic process" evidence=TAS]
InterPro:IPR002156 InterPro:IPR012337 InterPro:IPR017067
Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879 GO:GO:0005739
GO:GO:0005634 EMBL:CH471053 GO:GO:0000287 GO:GO:0003723
GO:GO:0006401 SUPFAM:SSF53098 GO:GO:0004540 Gene3D:3.40.970.10
InterPro:IPR011320 GO:GO:0004523 GO:GO:0006264 CleanEx:HS_RNH1
InterPro:IPR009027 SUPFAM:SSF55658 EMBL:AF048995 EMBL:AF048994
EMBL:AF039652 EMBL:AJ224117 EMBL:CR541820 EMBL:BT019670
EMBL:AK075490 EMBL:AC108488 EMBL:BC002973 IPI:IPI00000077
RefSeq:NP_002927.2 UniGene:Hs.568006 PDB:2QK9 PDB:2QKB PDB:2QKK
PDB:3BSU PDBsum:2QK9 PDBsum:2QKB PDBsum:2QKK PDBsum:3BSU
ProteinModelPortal:O60930 SMR:O60930 IntAct:O60930 STRING:O60930
PhosphoSite:O60930 PaxDb:O60930 PRIDE:O60930 DNASU:246243
Ensembl:ENST00000315212 GeneID:246243 KEGG:hsa:246243
UCSC:uc002qxs.3 CTD:246243 GeneCards:GC02M003592 H-InvDB:HIX0039191
HGNC:HGNC:18466 HPA:CAB032715 MIM:604123 neXtProt:NX_O60930
PharmGKB:PA38543 eggNOG:COG0328 HOGENOM:HOG000040465
HOVERGEN:HBG002135 InParanoid:O60930 KO:K03469 OMA:WRLKSGG
PhylomeDB:O60930 BindingDB:O60930 ChEMBL:CHEMBL5893
EvolutionaryTrace:O60930 GenomeRNAi:246243 NextBio:91896
ArrayExpress:O60930 Bgee:O60930 CleanEx:HS_RNASEH1
Genevestigator:O60930 GermOnline:ENSG00000171865 Pfam:PF01693
Uniprot:O60930
Length = 286
Score = 160 (61.4 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QAK+
Sbjct: 140 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 199
Query: 67 AN 68
N
Sbjct: 200 QN 201
>UNIPROTKB|I3LTQ9 [details] [associations]
symbol:RNASEH1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0006264 "mitochondrial DNA replication"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR002156 InterPro:IPR012337 InterPro:IPR017067
Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879 GO:GO:0005739
GO:GO:0005634 GO:GO:0000287 GO:GO:0003676 SUPFAM:SSF53098
Gene3D:3.40.970.10 InterPro:IPR011320 GO:GO:0004523 GO:GO:0006264
InterPro:IPR009027 SUPFAM:SSF55658 CTD:246243 KO:K03469 OMA:WRLKSGG
Pfam:PF01693 GeneTree:ENSGT00390000003466 EMBL:FP476004
RefSeq:NP_001230610.1 UniGene:Ssc.36025 Ensembl:ENSSSCT00000027102
GeneID:100626539 KEGG:ssc:100626539 Uniprot:I3LTQ9
Length = 287
Score = 160 (61.4 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A AL+ AK+
Sbjct: 141 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKALELAKA 200
Query: 67 AN 68
N
Sbjct: 201 QN 202
>WB|WBGene00004382 [details] [associations]
symbol:rnh-1.0 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004523
"ribonuclease H activity" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR017067 Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879
GO:GO:0000287 GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10
InterPro:IPR011320 GO:GO:0004523 InterPro:IPR009027 SUPFAM:SSF55658
HOGENOM:HOG000040465 KO:K03469 OMA:WRLKSGG Pfam:PF01693
GeneTree:ENSGT00390000003466 HSSP:Q04740 EMBL:FO081284
UniGene:Cel.14915 GeneID:3565940 KEGG:cel:CELE_F59A6.6
UCSC:F59A6.6a CTD:3565940 NextBio:958453 RefSeq:NP_001040786.1
ProteinModelPortal:Q86MG7 SMR:Q86MG7 STRING:Q86MG7
EnsemblMetazoa:F59A6.6c WormBase:F59A6.6c InParanoid:Q86MG7
ArrayExpress:Q86MG7 Uniprot:Q86MG7
Length = 251
Score = 139 (54.0 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 1 MDPD--NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAI 58
+DP+ N VV+TDGAC NG A AG+GVY+G+++ N G V G TNN E+
Sbjct: 95 IDPEFANAPVVYTDGACSSNGTKNAKAGWGVYWGDDSEDNEFGPVYGAPTNNRGELIAVQ 154
Query: 59 HALKQA-KSANEKVKLKRSYN 78
A+++A + KV +K N
Sbjct: 155 KAIEKAIEKRLPKVVIKTDSN 175
>POMBASE|SPBC336.06c [details] [associations]
symbol:rnh1 "ribonuclease H Rnh1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=ISO] InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR017067 Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879
PomBase:SPBC336.06c GO:GO:0005730 GO:GO:0000287 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003676 GO:GO:0006401
SUPFAM:SSF53098 Gene3D:3.40.970.10 InterPro:IPR011320 GO:GO:0004523
InterPro:IPR009027 SUPFAM:SSF55658 eggNOG:COG0328
HOGENOM:HOG000040465 KO:K03469 Pfam:PF01693 EMBL:AF048992
PIR:T40244 PIR:T43641 RefSeq:NP_596126.1 ProteinModelPortal:Q9UST8
SMR:Q9UST8 STRING:Q9UST8 EnsemblFungi:SPBC336.06c.1 GeneID:2540252
KEGG:spo:SPBC336.06c OMA:MNEVEGD OrthoDB:EOG4ZGSNP NextBio:20801383
Uniprot:Q9UST8
Length = 264
Score = 134 (52.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAKS 66
VV+ DG+ RNGK GA AG GV+FG ++P N++ + G TNN AE+Q I AL+ S
Sbjct: 125 VVYADGSSLRNGKKGAVAGCGVFFGNDDPRNISVPLAGEEQTNNRAELQAIILALENT-S 183
Query: 67 ANEKVKLKRSYN 78
+ ++ +Y+
Sbjct: 184 GDLTIRSDSNYS 195
>CGD|CAL0006207 [details] [associations]
symbol:orf19.5564 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002156 InterPro:IPR012337 Pfam:PF00075
PROSITE:PS50879 GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10
InterPro:IPR011320 GO:GO:0004523 EMBL:AACQ01000034
InterPro:IPR009027 SUPFAM:SSF55658 eggNOG:COG0328 KO:K03469
Pfam:PF01693 RefSeq:XP_719126.1 ProteinModelPortal:Q5ABY6
GeneID:3639238 KEGG:cal:CaO19.5564 Uniprot:Q5ABY6
Length = 232
Score = 122 (48.0 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVA---GKV--TG-RVTNNNAEIQGAIHALK 62
V+ DGAC NG+ A GYGVY+G+ +P NV+ +V G R TN AE+ HALK
Sbjct: 57 VYVDGACRNNGRENAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALK 116
>UNIPROTKB|Q5ABY6 [details] [associations]
symbol:RNH12 "Putative uncharacterized protein RNH12"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR002156
InterPro:IPR012337 Pfam:PF00075 PROSITE:PS50879 GO:GO:0003676
SUPFAM:SSF53098 Gene3D:3.40.970.10 InterPro:IPR011320 GO:GO:0004523
EMBL:AACQ01000034 InterPro:IPR009027 SUPFAM:SSF55658 eggNOG:COG0328
KO:K03469 Pfam:PF01693 RefSeq:XP_719126.1 ProteinModelPortal:Q5ABY6
GeneID:3639238 KEGG:cal:CaO19.5564 Uniprot:Q5ABY6
Length = 232
Score = 122 (48.0 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVA---GKV--TG-RVTNNNAEIQGAIHALK 62
V+ DGAC NG+ A GYGVY+G+ +P NV+ +V G R TN AE+ HALK
Sbjct: 57 VYVDGACRNNGRENAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALK 116
>WB|WBGene00007303 [details] [associations]
symbol:rnh-1.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004523
"ribonuclease H activity" evidence=IEA] InterPro:IPR002156
InterPro:IPR012337 Pfam:PF00075 PROSITE:PS50879 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0328 HOGENOM:HOG000040465
KO:K03469 GeneTree:ENSGT00390000003466 EMBL:Z81461 PIR:T18916
RefSeq:NP_492581.1 HSSP:P00647 ProteinModelPortal:Q9XVE6 SMR:Q9XVE6
DIP:DIP-24980N IntAct:Q9XVE6 MINT:MINT-1040043 STRING:Q9XVE6
EnsemblMetazoa:C04F12.9 GeneID:182229 KEGG:cel:CELE_C04F12.9
UCSC:C04F12.9 CTD:182229 WormBase:C04F12.9 InParanoid:Q9XVE6
OMA:HISINTD NextBio:916840 Uniprot:Q9XVE6
Length = 139
Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 10 FTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQAK 65
+TDG+ NG+ G+ GYGV+ + NV+G G TNN E++ HA + A+
Sbjct: 6 YTDGSALGNGQQGSRGGYGVHVPSDTSKNVSGSYPHGPQTNNRYELEAIKHATQMAR 62
>CGD|CAL0000560 [details] [associations]
symbol:orf19.5614 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006401 "RNA catabolic
process" evidence=IEA] [GO:0031505 "fungal-type cell wall
organization" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=IEA] InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR017067 Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879
CGD:CAL0000560 GO:GO:0000287 GO:GO:0003676 SUPFAM:SSF53098
Gene3D:3.40.970.10 InterPro:IPR011320 GO:GO:0004523
EMBL:AACQ01000034 InterPro:IPR009027 SUPFAM:SSF55658 eggNOG:COG0328
KO:K03469 Pfam:PF01693 RefSeq:XP_719174.1 ProteinModelPortal:Q5ABT7
GeneID:3639183 KEGG:cal:CaO19.5614 Uniprot:Q5ABT7
Length = 285
Score = 110 (43.8 bits), Expect = 0.00027, P = 0.00027
Identities = 42/137 (30%), Positives = 64/137 (46%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENN------PLNVAGKVTG-RVTNNNAEIQGAIHA 60
V+ DGA NG+ A +GYGVY+G N+ PL+ K T + TN AE+ G HA
Sbjct: 117 VYVDGASRGNGQTSKAPSGYGVYYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGVKHA 176
Query: 61 LKQAKSANEKVKLKRSYNDTHAQKK--VRNVSSVAMRIAQKVDYISHDVISVGIPFPSIQ 118
LK + + K + H+ K +++V+ + A K + + +V +
Sbjct: 177 LKNIHNDLQSGKATGK-TEIHSDSKYAIQSVNEWSSNWA-KNGWKNSKGETVANK--DLI 232
Query: 119 DENVKLKRSYNDTHAQK 135
E V LK S N T+ K
Sbjct: 233 QETVALKNSINKTYQDK 249
>UNIPROTKB|Q5ABT7 [details] [associations]
symbol:RNH11 "Putative uncharacterized protein RNH11"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002156
InterPro:IPR012337 InterPro:IPR017067 Pfam:PF00075
PIRSF:PIRSF036852 PROSITE:PS50879 CGD:CAL0000560 GO:GO:0000287
GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10 InterPro:IPR011320
GO:GO:0004523 EMBL:AACQ01000034 InterPro:IPR009027 SUPFAM:SSF55658
eggNOG:COG0328 KO:K03469 Pfam:PF01693 RefSeq:XP_719174.1
ProteinModelPortal:Q5ABT7 GeneID:3639183 KEGG:cal:CaO19.5614
Uniprot:Q5ABT7
Length = 285
Score = 110 (43.8 bits), Expect = 0.00027, P = 0.00027
Identities = 42/137 (30%), Positives = 64/137 (46%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENN------PLNVAGKVTG-RVTNNNAEIQGAIHA 60
V+ DGA NG+ A +GYGVY+G N+ PL+ K T + TN AE+ G HA
Sbjct: 117 VYVDGASRGNGQTSKAPSGYGVYYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGVKHA 176
Query: 61 LKQAKSANEKVKLKRSYNDTHAQKK--VRNVSSVAMRIAQKVDYISHDVISVGIPFPSIQ 118
LK + + K + H+ K +++V+ + A K + + +V +
Sbjct: 177 LKNIHNDLQSGKATGK-TEIHSDSKYAIQSVNEWSSNWA-KNGWKNSKGETVANK--DLI 232
Query: 119 DENVKLKRSYNDTHAQK 135
E V LK S N T+ K
Sbjct: 233 QETVALKNSINKTYQDK 249
>MGI|MGI:2442836 [details] [associations]
symbol:Brip1 "BRCA1 interacting protein C-terminal helicase
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 MGI:MGI:2442836
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006357
GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
CleanEx:MM_BACH1 eggNOG:COG1199 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 CTD:83990 HOGENOM:HOG000068083
HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:AL592465
EMBL:AL592065 EMBL:AL645690 EMBL:BC094252 EMBL:AK051878
EMBL:AK080771 IPI:IPI00319607 RefSeq:NP_840094.1 UniGene:Mm.186143
ProteinModelPortal:Q5SXJ3 SMR:Q5SXJ3 STRING:Q5SXJ3
PhosphoSite:Q5SXJ3 PRIDE:Q5SXJ3 Ensembl:ENSMUST00000044423
GeneID:237911 KEGG:mmu:237911 UCSC:uc007ksf.2 InParanoid:Q5SXJ3
OMA:GVHKISD ChiTaRS:BRIP1 NextBio:383570 Bgee:Q5SXJ3
CleanEx:MM_BRIP1 Genevestigator:Q5SXJ3
GermOnline:ENSMUSG00000034329 Uniprot:Q5SXJ3
Length = 1174
Score = 115 (45.5 bits), Expect = 0.00051, P = 0.00051
Identities = 23/64 (35%), Positives = 43/64 (67%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + VI+VGIPFP+++D V+LKR YND H++ +G+ P Q +++
Sbjct: 767 KVSEGLDFSDDNARAVITVGIPFPNVKDLQVELKRQYNDHHSKSRGL-LPGRQWYEIQAY 825
Query: 152 RSYN 155
R+ N
Sbjct: 826 RALN 829
>ASPGD|ASPL0000032202 [details] [associations]
symbol:AN5188 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR002156 InterPro:IPR012337 Pfam:PF00075 PROSITE:PS50879
GO:GO:0003676 EMBL:BN001305 SUPFAM:SSF53098 Gene3D:3.40.970.10
InterPro:IPR011320 GO:GO:0004523 InterPro:IPR009027 SUPFAM:SSF55658
Pfam:PF01693 OMA:PGVYTDW ProteinModelPortal:C8VF62
EnsemblFungi:CADANIAT00003184 HOGENOM:HOG000209450 Uniprot:C8VF62
Length = 463
Score = 110 (43.8 bits), Expect = 0.00063, P = 0.00063
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPL-NVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ RNG+V A AG GVYFG + NV+ + G R TN AE+ + A
Sbjct: 276 PPGMLRIYTDGSSLRNGRVQAMAGVGVYFGPGDSRRNVSEPLKGSRQTNQRAELTAILRA 335
Query: 61 L 61
L
Sbjct: 336 L 336
>UNIPROTKB|G3N0I3 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
EMBL:DAAA02048371 Ensembl:ENSBTAT00000065712 Uniprot:G3N0I3
Length = 756
Score = 112 (44.5 bits), Expect = 0.00071, P = 0.00071
Identities = 21/64 (32%), Positives = 43/64 (67%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + V+++GIPFP+++D V+LKR YND H++ +G+ P Q +++
Sbjct: 625 KVSEGLDFSDDNARAVVTIGIPFPNVKDLQVELKRQYNDQHSKLRGL-LPGRQWYEIQAY 683
Query: 152 RSYN 155
R+ N
Sbjct: 684 RALN 687
>UNIPROTKB|E1C1X9 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 EMBL:AADN02025783
IPI:IPI00820128 Ensembl:ENSGALT00000008466 ArrayExpress:E1C1X9
Uniprot:E1C1X9
Length = 1249
Score = 114 (45.2 bits), Expect = 0.00072, P = 0.00072
Identities = 31/112 (27%), Positives = 62/112 (55%)
Query: 51 NAEIQGAIHALKQAKSANEKVKLKRSYNDTHAQKKVRNVSS-VAM---RIAQKVDYISHD 106
N E+ + A Q + ++ +L + Y D K ++ + +A+ ++++ +D+ +
Sbjct: 726 NLELVKTVIAEPQGGAKSDFDELLKIYYDAIKFKGEKDGALLIAVCRGKVSEGLDFCDEN 785
Query: 107 ---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H +G+ P Q +++ R+ N
Sbjct: 786 ARAVITIGIPFPNVKDLQVELKRKYNDQHKTTRGL-LPGSQWYEIQAYRALN 836
>UNIPROTKB|Q3YK19 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031965 "nuclear
membrane" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0006357 GO:GO:0051539 GO:GO:0004003
Reactome:REACT_115612 eggNOG:COG1199 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:DQ109581 IPI:IPI00593256
RefSeq:NP_001028230.1 UniGene:Gga.17801 ProteinModelPortal:Q3YK19
STRING:Q3YK19 Ensembl:ENSGALT00000039225 GeneID:417642
KEGG:gga:417642 CTD:83990 HOGENOM:HOG000068083 HOVERGEN:HBG081519
InParanoid:Q3YK19 KO:K15362 OMA:GYETSCK OrthoDB:EOG4J6RQ8
NextBio:20820915 ArrayExpress:Q3YK19 Uniprot:Q3YK19
Length = 1252
Score = 114 (45.2 bits), Expect = 0.00073, P = 0.00073
Identities = 31/112 (27%), Positives = 62/112 (55%)
Query: 51 NAEIQGAIHALKQAKSANEKVKLKRSYNDTHAQKKVRNVSS-VAM---RIAQKVDYISHD 106
N E+ + A Q + ++ +L + Y D K ++ + +A+ ++++ +D+ +
Sbjct: 726 NLELVKTVIAEPQGGAKSDFDELLKIYYDAIKFKGEKDGALLIAVCRGKVSEGLDFCDEN 785
Query: 107 ---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLKRSYN 155
VI++GIPFP+++D V+LKR YND H +G+ P Q +++ R+ N
Sbjct: 786 ARAVITIGIPFPNVKDLQVELKRKYNDQHKTTRGL-LPGSQWYEIQAYRALN 836
>RGD|1307659 [details] [associations]
symbol:Brip1 "BRCA1 interacting protein C-terminal helicase 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IDA] [GO:0031965 "nuclear membrane" evidence=ISO]
[GO:0071295 "cellular response to vitamin" evidence=IEP]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491 RGD:1307659
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0008285 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
IPI:IPI00781914 Ensembl:ENSRNOT00000055817 ArrayExpress:D4AD12
GO:GO:0071295 Uniprot:D4AD12
Length = 818
Score = 112 (44.5 bits), Expect = 0.00078, P = 0.00078
Identities = 22/64 (34%), Positives = 43/64 (67%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++
Sbjct: 687 KVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAY 745
Query: 152 RSYN 155
R+ N
Sbjct: 746 RALN 749
>UNIPROTKB|J3QSE8 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 HGNC:HGNC:20473
ProteinModelPortal:J3QSE8 Ensembl:ENST00000577598 Uniprot:J3QSE8
Length = 994
Score = 112 (44.5 bits), Expect = 0.00098, P = 0.00098
Identities = 22/64 (34%), Positives = 43/64 (67%)
Query: 95 RIAQKVDYISHD---VISVGIPFPSIQDENVKLKRSYNDTHAQKKGIPFPSIQDEKVKLK 151
++++ +D+ + VI++GIPFP+++D V+LKR YND H++ +G+ P Q +++
Sbjct: 764 KVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGL-LPGRQWYEIQAY 822
Query: 152 RSYN 155
R+ N
Sbjct: 823 RALN 826
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.366 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 191 191 0.00094 110 3 11 23 0.36 33
31 0.43 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 535 (57 KB)
Total size of DFA: 133 KB (2084 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.96u 0.09s 19.05t Elapsed: 00:00:02
Total cpu time: 18.97u 0.09s 19.06t Elapsed: 00:00:02
Start: Thu Aug 15 12:39:23 2013 End: Thu Aug 15 12:39:25 2013