BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8740
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H4B|A Chain A, Solution Structure Of The Birch Pollen Allergen Bet V 4
Length = 84
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTD 221
F D N +G + + E ++ S TP++++ M+A +T+ DG I + FTD
Sbjct: 15 FKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAEIDTDGDGFISFQEFTD 68
>pdb|2OPO|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|C Chain C, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|D Chain D, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
Length = 86
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTD 221
F D N +G + + + ++ S TP+++ M+A +T+ DG I + FTD
Sbjct: 17 FKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTD 70
>pdb|1AXI|A Chain A, Structural Plasticity At The Hgh:hghbp Interface
Length = 191
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 85 FLFSHMQDKLSKHSSQVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAA 144
FL S + L +S ++ +L +L++ + T+M + +G+ G I KQ ++
Sbjct: 92 FLRSVFANSLVYGASDSNVYDLLKDLEERIQTLMGRLTDGSPRTGQIFKQTYSKFDTNSH 151
Query: 145 NVELILK-YFDMFLKLKDLTSSASFMEI 171
N + +LK Y ++ +D+T A+++ I
Sbjct: 152 NDDALLKNYGLLYCFRRDMTYVATYLRI 179
>pdb|3K21|A Chain A, Crystal Structure Of Carboxy-Terminus Of Pfc0420w
Length = 191
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 165 SASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGF 219
++F+ +D + +G++ + K+ +E+ P + + +L +++ GKIDY F
Sbjct: 55 KSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKIDYTEF 109
>pdb|3LIC|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Sohk1s-Z6
Length = 274
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 182 KDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGF---TDRFHEPAKEIGFNLAVLL 238
K E + Q+ S++ ++F+L + N G D++G D + P K L +L
Sbjct: 8 KRLYENLAQESSHSASRLQFLLEHAQANTQGLSDFIGLLADKDDINNPEK-----LKTVL 62
Query: 239 TNLSEHMPN 247
TN + P+
Sbjct: 63 TNRIQRNPD 71
>pdb|3OX5|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 167 SFMEIDINNEGWVYPKDFKEKMEQQKSYT--PEDIEFMLACCETNHDGKIDYVGFT 220
+F E D N +G + + +E M + + DIE ++ + N DG++D+ F
Sbjct: 93 AFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 148
>pdb|2K7C|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 C-Domain
pdb|2K7D|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain
Length = 72
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 167 SFMEIDINNEGWVYPKDFKEKMEQQKSYT--PEDIEFMLACCETNHDGKIDYVGF 219
+F E D N +G + + +E M + + DIE ++ + N DG++D+ F
Sbjct: 12 AFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEF 66
>pdb|2LAN|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 N-Domain With Rdc
pdb|2LAP|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain With Rdc
Length = 167
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 167 SFMEIDINNEGWVYPKDFKEKMEQQKSYT--PEDIEFMLACCETNHDGKIDYVGFT 220
+F E D N +G + + +E M + + DIE ++ + N DG++D+ F
Sbjct: 107 AFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 162
>pdb|3HHR|A Chain A, Human Growth Hormone And Extracellular Domain Of Its
Receptor: Crystal Structure Of The Complex
Length = 190
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 85 FLFSHMQDKLSKHSSQVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAA 144
FL S + L +S ++ +L +L++ + T+M + +G+ G I KQ ++
Sbjct: 92 FLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSH 151
Query: 145 NVELILK-YFDMFLKLKDLTSSASFMEI 171
N + +LK Y ++ KD+ +F+ I
Sbjct: 152 NDDALLKNYGLLYCFRKDMDKVETFLRI 179
>pdb|1HWG|A Chain A, 1:2 Complex Of Human Growth Hormone With Its Soluble
Binding Protein
Length = 191
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 85 FLFSHMQDKLSKHSSQVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAA 144
FL S + L +S ++ +L +L++ + T+M + +G+ G I KQ ++
Sbjct: 92 FLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSH 151
Query: 145 NVELILK-YFDMFLKLKDLTSSASFMEI 171
N + +LK Y ++ KD+ +F+ I
Sbjct: 152 NDDALLKNYGLLYCFRKDMDKVETFLRI 179
>pdb|1HWH|A Chain A, 1:1 Complex Of Human Growth Hormone Mutant G120r With Its
Soluble Binding Protein
pdb|1BP3|A Chain A, The Xray Structure Of A Growth Hormone-Prolactin Receptor
Complex
pdb|1A22|A Chain A, Human Growth Hormone Bound To Single Receptor
Length = 191
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 85 FLFSHMQDKLSKHSSQVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAA 144
FL S + L +S ++ +L +L++ + T+M + +G+ G I KQ ++
Sbjct: 92 FLRSVFANSLVYGASDSNVYDLLKDLEERIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSH 151
Query: 145 NVELILK-YFDMFLKLKDLTSSASFMEI 171
N + +LK Y ++ KD+ +F+ I
Sbjct: 152 NDDALLKNYGLLYCFRKDMDKVETFLRI 179
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 133 KQMVDTLVESAANVELILKYFDMFLK-LKDLTSSAS-------FMEIDINNEGWVYPKDF 184
++M+D + E + ++ M ++ +KD + S F D N +G++ ++
Sbjct: 58 QEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEEL 117
Query: 185 KEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219
K ++ ++ T +DIE ++ + N+DG+IDY F
Sbjct: 118 KIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 153
>pdb|1HGU|A Chain A, Human Growth Hormone
Length = 191
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 85 FLFSHMQDKLSKHSSQVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAA 144
FL S + L +S D+ +L +L++ + T+M + +G+ G KQ ++
Sbjct: 92 FLRSVFANSLVYGASDSDVYDLLKDLEEGIQTLMGRLEDGSPRTGQAFKQTYAKFDANSH 151
Query: 145 NVELILK-YFDMFLKLKDLTSSASFMEI 171
N + +LK Y ++ KD+ +F+ I
Sbjct: 152 NDDALLKNYGLLYCFRKDMDKVETFLRI 179
>pdb|3OX6|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 167 SFMEIDINNEGWVYPKDFKEKMEQQKSYT--PEDIEFMLACCETNHDGKIDYVGFT 220
+F E D N +G + + +E M + DIE ++ + N DG++D+ F
Sbjct: 93 AFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 148
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219
F D N +G++ ++ K ++ ++ T +DIE ++ + N+DG+IDY F
Sbjct: 101 FRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 153
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 133 KQMVDTLVESAANVELILKYFDMFLK-LKDLTSSASFMEI-------DINNEGWVYPKDF 184
++M+D + E + ++ M ++ +KD + S E+ D N +G++ +
Sbjct: 58 QEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMXDKNADGYIDLDEL 117
Query: 185 KEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219
K ++ ++ T +DIE ++ + N+DG+IDY F
Sbjct: 118 KIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 153
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 133 KQMVDTLVESAANVELILKYFDMFLK-LKDLTSSASFMEI-------DINNEGWVYPKDF 184
++M+D + E + ++ M ++ +KD + S E+ D N +G++ +
Sbjct: 58 QEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMWDKNADGYIDLDEL 117
Query: 185 KEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219
K ++ ++ T +DIE ++ + N+DG+IDY F
Sbjct: 118 KIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 153
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 172 DINNEGWVYPKDFKEKMEQQKSY-TPEDIEFMLACCETNHDGKIDYVGF 219
D N +G++ ++ E + + T EDIE ++ + N+DG+ID+ F
Sbjct: 106 DKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEF 154
>pdb|2JT8|A Chain A, Solution Structure Of The F153-To-5-Flurotryptophan Mutant
Of Human Cardiac Troponin C
Length = 161
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 133 KQMVDTLVESAANVELILKYFDMFLK-LKDLTSSAS-------FMEIDINNEGWVYPKDF 184
++M+D + E + ++ M ++ +KD + S F D N +G++ +
Sbjct: 58 QEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLDEL 117
Query: 185 KEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDY 216
K ++ ++ T +DIE ++ + N+DG+IDY
Sbjct: 118 KIMLQATGETITEDDIEELMKDGDKNNDGRIDY 150
>pdb|1OZS|A Chain A, C-Domain Of Human Cardiac Troponin C In Complex With The
Inhibitory Region Of Human Cardiac Troponin I
Length = 73
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219
S F D N +G++ ++ K ++ ++ T +DIE ++ + N+DG+IDY F
Sbjct: 10 SDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 65
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219
S F D N +G++ ++ K ++ ++ T +DIE ++ + N+DG+IDY F
Sbjct: 8 SDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 63
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 133 KQMVDTLVESAANVELILKYFDMFLK-LKDLTSSAS-------FMEIDINNEGWVYPKDF 184
++M+D + E + ++ M ++ +KD + S F D N +G++ +
Sbjct: 58 QEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLDEL 117
Query: 185 KEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDY 216
K ++ ++ T +DIE ++ + N+DG+IDY
Sbjct: 118 KIMLQATGETITEDDIEELMKDGDKNNDGRIDY 150
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 172 DINNEGWVYPKDFKEKMEQQKSY-TPEDIEFMLACCETNHDGKIDYVGF 219
D N +G++ ++ E + + T EDIE ++ + N+DG+ID+ F
Sbjct: 106 DKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEF 154
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 172 DINNEGWVYPKDFKEKMEQQKSY-TPEDIEFMLACCETNHDGKIDYVGF 219
D N +G++ ++ E + + T EDIE ++ + N+DG+ID+ F
Sbjct: 103 DKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEF 151
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 172 DINNEGWVYPKDFKEKMEQQKSY-TPEDIEFMLACCETNHDGKIDYVGF 219
D N +G++ ++ E + + T EDIE ++ + N+DG+ID+ F
Sbjct: 106 DKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEF 154
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 76
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219
S F D N +G++ ++ K ++ ++ T +DIE ++ + N+DG+IDY F
Sbjct: 13 SDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 68
>pdb|2LVI|A Chain A, Solution Structure Of Apo-phl P 7
pdb|2LVJ|A Chain A, Solution Structure Of Hemi-mg-bound Phl P 7
pdb|2LVK|A Chain A, Solution Structure Of Ca-bound Phl P 7
Length = 77
Score = 27.7 bits (60), Expect = 6.3, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGF 219
F D N +G + + + + S + ++++ M+A +T+ DG ID+ F
Sbjct: 8 FKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEF 59
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219
S F D N +G++ ++ K ++ ++ T +DIE ++ + N+DG+IDY F
Sbjct: 98 SDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 153
>pdb|2KDH|A Chain A, The Solution Structure Of Human Cardiac Troponin C In
Complex With The Green Tea Polyphenol; (-)-
Epigallocatechin-3-Gallate
pdb|2L98|A Chain A, Structure Of Trans-Resveratrol In Complex With The Cardiac
Regulatory Protein Troponin C
Length = 72
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219
S F D N +G++ + K ++ ++ T +DIE ++ + N+DG+IDY F
Sbjct: 9 SDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 64
>pdb|1K9U|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
pdb|1K9U|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
Length = 78
Score = 27.7 bits (60), Expect = 6.7, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGF 219
F D N +G + + + + S + ++++ M+A +T+ DG ID+ F
Sbjct: 9 FKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEF 60
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I
Length = 81
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219
S F D N +G++ ++ K ++ ++ T +DIE ++ + N+DG+IDY F
Sbjct: 18 SDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 73
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 172 DINNEGWVYPKDFKEKMEQQKSY-TPEDIEFMLACCETNHDGKIDYVGF 219
D N +G++ ++ E + T E+IE ++ + N+DG+ID+ F
Sbjct: 103 DRNADGYIDAEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEF 151
>pdb|2WST|A Chain A, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|B Chain B, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|C Chain C, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|D Chain D, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|E Chain E, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|F Chain F, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
Length = 208
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 123 EGNVVNGTIGKQMVDTLVESAANVELILKYFDMFLKL-KDLTSSASFME--IDINNE 176
E N+V G+ G + DTLV AN + ++ + +L + LTSS + + +D NN
Sbjct: 105 ESNLVRGSWGMKDQDTLVTPIANGQYLMPNLTAYPRLIQTLTSSYIYTQAHLDHNNS 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,018,181
Number of Sequences: 62578
Number of extensions: 267940
Number of successful extensions: 792
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 42
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)