Query psy8740
Match_columns 252
No_of_seqs 219 out of 1109
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 18:00:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2243|consensus 100.0 2.2E-90 4.8E-95 701.5 16.3 239 14-252 3909-4147(5019)
2 KOG0027|consensus 99.7 1.6E-16 3.5E-21 131.8 11.7 127 99-226 5-150 (151)
3 COG5126 FRQ1 Ca2+-binding prot 99.6 1.6E-15 3.5E-20 129.7 11.3 128 93-224 13-155 (160)
4 PF08454 RIH_assoc: RyR and IP 99.5 5.7E-15 1.2E-19 119.0 3.8 48 37-84 58-105 (109)
5 KOG0031|consensus 99.5 3.2E-13 6.9E-18 115.2 11.8 121 99-224 29-164 (171)
6 cd05022 S-100A13 S-100A13: S-1 99.3 2.8E-12 6E-17 99.7 6.3 63 164-226 10-76 (89)
7 KOG0030|consensus 99.3 2E-11 4.2E-16 102.8 9.8 126 96-223 5-149 (152)
8 PF13499 EF-hand_7: EF-hand do 99.3 1.4E-11 3.1E-16 87.9 6.3 59 165-223 3-66 (66)
9 cd05027 S-100B S-100B: S-100B 99.2 1.8E-11 3.9E-16 94.6 7.2 62 164-225 10-79 (88)
10 cd05026 S-100Z S-100Z: S-100Z 99.2 4.9E-11 1.1E-15 92.6 6.8 60 165-224 13-80 (93)
11 PTZ00184 calmodulin; Provision 99.1 1E-09 2.2E-14 87.4 11.5 112 111-224 29-147 (149)
12 cd00052 EH Eps15 homology doma 99.1 2.2E-10 4.8E-15 81.0 6.8 59 165-224 2-60 (67)
13 PTZ00183 centrin; Provisional 99.1 1.5E-09 3.2E-14 87.8 12.0 63 163-225 91-154 (158)
14 cd05029 S-100A6 S-100A6: S-100 99.1 2.5E-10 5.5E-15 88.2 6.8 61 165-225 13-79 (88)
15 cd05031 S-100A10_like S-100A10 99.1 2.6E-10 5.6E-15 88.0 6.7 61 164-224 10-78 (94)
16 cd05025 S-100A1 S-100A1: S-100 99.1 2.5E-10 5.4E-15 87.6 5.9 64 164-227 11-82 (92)
17 KOG0027|consensus 99.1 3.3E-10 7.2E-15 94.0 7.1 61 164-224 10-71 (151)
18 KOG0028|consensus 99.1 1.7E-09 3.7E-14 92.9 11.1 114 111-225 51-170 (172)
19 smart00027 EH Eps15 homology d 99.0 6.9E-10 1.5E-14 85.8 6.8 60 165-225 13-72 (96)
20 cd00213 S-100 S-100: S-100 dom 98.9 2.7E-09 5.9E-14 80.7 6.3 62 164-225 10-79 (88)
21 cd05023 S-100A11 S-100A11: S-1 98.9 4.9E-09 1.1E-13 81.3 7.0 63 165-227 12-82 (89)
22 KOG0038|consensus 98.9 6.7E-09 1.5E-13 88.7 8.1 98 127-225 68-177 (189)
23 PF13833 EF-hand_8: EF-hand do 98.9 5.2E-09 1.1E-13 72.3 5.8 50 175-224 1-52 (54)
24 cd00051 EFh EF-hand, calcium b 98.8 1.5E-08 3.3E-13 67.7 7.2 59 165-223 3-62 (63)
25 KOG0034|consensus 98.8 1.7E-08 3.7E-13 88.4 9.4 96 129-225 65-175 (187)
26 COG5126 FRQ1 Ca2+-binding prot 98.7 2.4E-08 5.1E-13 85.8 7.2 61 164-225 22-83 (160)
27 PF14658 EF-hand_9: EF-hand do 98.7 4E-08 8.6E-13 73.1 5.9 60 166-225 2-64 (66)
28 cd05030 calgranulins Calgranul 98.7 2.2E-08 4.8E-13 77.0 4.4 64 165-228 11-82 (88)
29 cd00252 SPARC_EC SPARC_EC; ext 98.6 6E-08 1.3E-12 79.0 6.4 59 164-225 50-108 (116)
30 PTZ00184 calmodulin; Provision 98.6 1.5E-07 3.3E-12 74.8 7.0 60 165-224 14-74 (149)
31 KOG0028|consensus 98.5 2E-07 4.3E-12 80.3 7.0 82 165-246 36-140 (172)
32 PTZ00183 centrin; Provisional 98.5 2.3E-07 5E-12 75.0 7.0 58 166-223 21-79 (158)
33 KOG0037|consensus 98.2 7.5E-06 1.6E-10 73.5 9.7 110 110-223 74-186 (221)
34 KOG0041|consensus 98.2 2.2E-06 4.9E-11 76.5 6.3 61 164-224 101-162 (244)
35 KOG0031|consensus 98.2 3E-06 6.4E-11 72.9 6.6 62 165-230 35-103 (171)
36 KOG0036|consensus 98.1 1.1E-05 2.4E-10 78.3 9.4 111 118-230 39-152 (463)
37 KOG0044|consensus 98.1 2.3E-05 4.9E-10 69.3 10.5 60 165-224 103-174 (193)
38 PLN02964 phosphatidylserine de 98.1 1.6E-05 3.5E-10 81.1 10.8 61 165-225 182-243 (644)
39 PF00036 EF-hand_1: EF hand; 98.1 3.5E-06 7.5E-11 52.9 3.0 26 165-190 3-28 (29)
40 cd05024 S-100A10 S-100A10: A s 97.9 3.4E-05 7.3E-10 60.8 6.9 58 166-224 12-75 (91)
41 PRK12309 transaldolase/EF-hand 97.9 3.4E-05 7.3E-10 74.6 7.7 48 165-224 337-384 (391)
42 KOG0377|consensus 97.8 5.8E-05 1.3E-09 74.2 8.4 62 163-224 548-614 (631)
43 PF00036 EF-hand_1: EF hand; 97.8 1.7E-05 3.6E-10 49.8 3.0 27 198-224 1-27 (29)
44 KOG0030|consensus 97.8 2.2E-05 4.8E-10 66.5 3.9 61 165-225 14-77 (152)
45 PF13405 EF-hand_6: EF-hand do 97.8 2.4E-05 5.3E-10 48.9 3.0 25 165-189 3-27 (31)
46 PLN02964 phosphatidylserine de 97.8 4.1E-05 9E-10 78.1 6.2 57 164-224 145-206 (644)
47 KOG0044|consensus 97.8 0.00011 2.4E-09 65.0 8.1 60 165-224 67-127 (193)
48 KOG3533|consensus 97.6 7.6E-05 1.7E-09 80.5 6.1 100 29-136 1990-2090(2706)
49 KOG0037|consensus 97.5 0.00018 3.9E-09 64.7 6.0 60 165-224 60-121 (221)
50 PF13202 EF-hand_5: EF hand; P 97.4 0.00013 2.9E-09 44.1 2.6 24 165-188 2-25 (25)
51 PF12763 EF-hand_4: Cytoskelet 97.3 0.00059 1.3E-08 54.7 6.4 58 165-224 13-70 (104)
52 KOG0046|consensus 97.3 0.00035 7.7E-09 69.8 6.1 61 164-225 21-85 (627)
53 KOG0036|consensus 97.2 0.00066 1.4E-08 66.2 6.3 61 164-224 16-78 (463)
54 PF10591 SPARC_Ca_bdg: Secrete 97.2 0.0003 6.4E-09 56.9 3.3 60 161-221 53-112 (113)
55 KOG4065|consensus 97.1 0.00089 1.9E-08 55.6 5.2 56 167-222 72-142 (144)
56 KOG4223|consensus 96.9 0.0012 2.6E-08 62.5 4.9 96 137-233 208-317 (325)
57 PF13202 EF-hand_5: EF hand; P 96.8 0.0014 3E-08 39.6 3.0 25 199-223 1-25 (25)
58 KOG4223|consensus 96.7 0.0018 4E-08 61.2 4.5 60 165-224 166-227 (325)
59 KOG0040|consensus 96.5 0.0069 1.5E-07 66.8 7.6 79 165-243 2256-2345(2399)
60 smart00054 EFh EF-hand, calciu 96.2 0.0062 1.4E-07 34.3 2.9 26 165-190 3-28 (29)
61 PF13405 EF-hand_6: EF-hand do 96.1 0.0069 1.5E-07 37.6 2.9 27 198-224 1-27 (31)
62 KOG2643|consensus 96.0 0.0032 6.9E-08 61.9 1.8 66 165-230 236-319 (489)
63 PF14788 EF-hand_10: EF hand; 95.8 0.025 5.4E-07 40.3 5.2 46 179-224 2-48 (51)
64 PF09279 EF-hand_like: Phospho 95.8 0.02 4.4E-07 42.8 5.1 62 165-227 3-71 (83)
65 smart00054 EFh EF-hand, calciu 95.6 0.011 2.4E-07 33.2 2.4 27 198-224 1-27 (29)
66 cd00252 SPARC_EC SPARC_EC; ext 95.6 0.15 3.2E-06 41.6 9.7 102 63-188 1-106 (116)
67 KOG0034|consensus 95.2 0.089 1.9E-06 46.3 7.7 60 165-224 69-131 (187)
68 PF13833 EF-hand_8: EF-hand do 95.1 0.024 5.2E-07 38.7 3.2 27 164-190 27-53 (54)
69 KOG4251|consensus 94.7 0.015 3.3E-07 54.0 1.6 59 165-223 104-166 (362)
70 PF13499 EF-hand_7: EF-hand do 94.6 0.032 6.9E-07 39.3 2.7 24 165-188 43-66 (66)
71 KOG4251|consensus 94.4 0.11 2.4E-06 48.4 6.4 54 169-222 288-342 (362)
72 PF08726 EFhand_Ca_insen: Ca2+ 94.1 0.015 3.2E-07 43.7 0.2 52 165-223 9-67 (69)
73 KOG1955|consensus 91.8 0.24 5.2E-06 50.0 4.8 59 165-224 234-292 (737)
74 PRK12309 transaldolase/EF-hand 91.1 1.2 2.7E-05 43.3 8.8 26 165-190 360-385 (391)
75 KOG2562|consensus 90.0 0.42 9.2E-06 47.6 4.6 56 167-224 283-342 (493)
76 KOG1029|consensus 89.7 0.39 8.4E-06 50.7 4.2 60 164-224 197-256 (1118)
77 KOG4666|consensus 88.3 0.43 9.3E-06 46.0 3.2 85 142-227 272-362 (412)
78 KOG0042|consensus 87.1 0.69 1.5E-05 47.4 4.0 61 165-225 596-657 (680)
79 KOG2643|consensus 86.7 3 6.5E-05 41.6 8.0 94 130-224 285-383 (489)
80 KOG2562|consensus 86.5 0.86 1.9E-05 45.5 4.2 118 127-250 304-443 (493)
81 PF14788 EF-hand_10: EF hand; 85.2 1.6 3.4E-05 31.1 3.9 32 159-190 18-49 (51)
82 cd05022 S-100A13 S-100A13: S-1 84.4 1.3 2.7E-05 34.4 3.4 27 164-190 49-75 (89)
83 cd05026 S-100Z S-100Z: S-100Z 84.3 1.1 2.4E-05 34.5 3.1 27 164-190 55-81 (93)
84 cd00051 EFh EF-hand, calcium b 83.9 1.1 2.5E-05 29.0 2.7 26 199-224 2-27 (63)
85 KOG3555|consensus 81.9 1.8 3.9E-05 42.1 4.1 58 165-225 253-310 (434)
86 cd05029 S-100A6 S-100A6: S-100 81.9 1.8 4E-05 33.2 3.5 27 164-190 53-79 (88)
87 cd00052 EH Eps15 homology doma 81.8 1.6 3.5E-05 30.0 2.9 27 164-190 35-61 (67)
88 PF05517 p25-alpha: p25-alpha 81.7 3.5 7.6E-05 34.9 5.4 75 167-241 7-88 (154)
89 cd05030 calgranulins Calgranul 79.6 2.1 4.5E-05 32.6 3.0 27 164-190 53-79 (88)
90 cd05025 S-100A1 S-100A1: S-100 79.3 2.1 4.6E-05 32.4 3.0 27 164-190 54-80 (92)
91 cd05031 S-100A10_like S-100A10 79.0 2.2 4.7E-05 32.5 3.0 28 164-191 53-80 (94)
92 cd05023 S-100A11 S-100A11: S-1 78.8 2.1 4.5E-05 33.0 2.9 26 165-190 55-80 (89)
93 KOG0751|consensus 77.8 14 0.00031 37.8 9.0 111 111-225 55-175 (694)
94 KOG0169|consensus 76.8 4.4 9.5E-05 42.7 5.3 61 165-225 139-200 (746)
95 PF08976 DUF1880: Domain of un 76.0 2.4 5.1E-05 35.2 2.6 32 193-224 3-34 (118)
96 smart00027 EH Eps15 homology d 75.8 3.5 7.5E-05 31.5 3.3 27 198-224 11-37 (96)
97 PF10591 SPARC_Ca_bdg: Secrete 73.6 22 0.00049 28.5 7.7 107 62-186 2-112 (113)
98 KOG3866|consensus 72.7 3.7 8.1E-05 39.6 3.4 59 165-223 247-322 (442)
99 cd00213 S-100 S-100: S-100 dom 72.2 4.4 9.6E-05 30.1 3.1 29 197-225 8-38 (88)
100 KOG0377|consensus 70.3 17 0.00036 36.8 7.3 67 163-231 465-535 (631)
101 cd05027 S-100B S-100B: S-100B 66.8 6.6 0.00014 30.1 3.1 27 164-190 53-79 (88)
102 KOG4578|consensus 64.1 5.9 0.00013 38.5 2.8 57 167-224 338-397 (421)
103 KOG0041|consensus 63.8 6.4 0.00014 35.9 2.8 34 199-232 101-137 (244)
104 cd05024 S-100A10 S-100A10: A s 62.1 19 0.00041 28.4 4.9 27 164-190 50-76 (91)
105 KOG0751|consensus 61.7 15 0.00033 37.6 5.2 62 159-220 176-239 (694)
106 cd07313 terB_like_2 tellurium 60.3 14 0.00029 28.3 3.8 50 176-225 13-65 (104)
107 PF12763 EF-hand_4: Cytoskelet 59.2 10 0.00022 30.3 3.0 32 159-190 40-71 (104)
108 KOG0998|consensus 57.1 4 8.6E-05 43.6 0.4 60 165-225 286-345 (847)
109 KOG2871|consensus 57.0 8 0.00017 38.1 2.4 59 165-223 312-372 (449)
110 PF14513 DAG_kinase_N: Diacylg 53.5 10 0.00022 32.0 2.2 48 176-224 5-59 (138)
111 KOG0040|consensus 49.7 1.2E+02 0.0026 35.4 10.0 115 99-223 2250-2396(2399)
112 KOG0035|consensus 49.6 25 0.00055 38.0 4.8 61 165-225 750-816 (890)
113 KOG3555|consensus 45.7 30 0.00066 33.9 4.3 76 111-203 248-323 (434)
114 PF14658 EF-hand_9: EF-hand do 44.1 29 0.00063 25.9 3.1 26 165-190 38-64 (66)
115 PF07097 DUF1359: Protein of u 42.4 17 0.00038 28.9 1.8 25 115-139 72-97 (102)
116 KOG4666|consensus 42.1 47 0.001 32.5 4.9 61 164-224 261-323 (412)
117 COG4103 Uncharacterized protei 41.3 45 0.00098 28.7 4.2 57 166-224 34-93 (148)
118 KOG4347|consensus 38.6 29 0.00063 36.3 3.2 55 164-219 557-612 (671)
119 PF12872 OST-HTH: OST-HTH/LOTU 37.7 43 0.00094 23.8 3.2 30 211-240 21-56 (74)
120 PLN02952 phosphoinositide phos 37.0 1.3E+02 0.0028 31.3 7.5 62 164-226 40-111 (599)
121 PF01885 PTS_2-RNA: RNA 2'-pho 36.6 49 0.0011 29.0 3.9 36 172-207 26-62 (186)
122 PLN02222 phosphoinositide phos 36.6 80 0.0017 32.7 5.9 61 164-226 27-91 (581)
123 PRK00819 RNA 2'-phosphotransfe 36.2 56 0.0012 28.7 4.2 36 172-207 27-63 (179)
124 KOG1707|consensus 33.7 36 0.00079 35.3 3.0 51 165-221 318-373 (625)
125 KOG1029|consensus 32.4 1.1E+02 0.0025 33.1 6.3 49 174-223 27-75 (1118)
126 COG1158 Rho Transcription term 30.8 39 0.00084 33.3 2.5 63 160-226 349-421 (422)
127 COG1309 AcrR Transcriptional r 30.1 9.9 0.00022 29.3 -1.4 25 8-32 33-57 (201)
128 KOG1707|consensus 28.6 82 0.0018 32.9 4.5 41 165-205 198-240 (625)
129 PF12486 DUF3702: ImpA domain 28.4 2.7E+02 0.0059 23.8 7.0 77 111-189 20-96 (148)
130 PF07879 PHB_acc_N: PHB/PHA ac 27.9 44 0.00096 25.0 1.8 23 169-191 10-32 (64)
131 KOG0038|consensus 26.2 1.1E+02 0.0023 26.9 4.2 60 165-224 74-135 (189)
132 PF08542 Rep_fac_C: Replicatio 26.0 45 0.00097 24.6 1.6 46 194-245 3-48 (89)
133 PF03979 Sigma70_r1_1: Sigma-7 26.0 73 0.0016 23.9 2.8 34 176-210 19-52 (82)
134 PRK09613 thiH thiamine biosynt 25.1 2E+02 0.0042 29.0 6.4 53 176-230 10-62 (469)
135 PLN02751 glutamyl-tRNA(Gln) am 24.9 7.8E+02 0.017 25.4 12.5 135 11-152 324-475 (544)
136 PF00404 Dockerin_1: Dockerin 24.7 86 0.0019 18.4 2.3 14 172-185 1-14 (21)
137 PLN02230 phosphoinositide phos 24.4 2.3E+02 0.0049 29.6 6.8 61 165-226 32-103 (598)
138 PLN02228 Phosphoinositide phos 24.3 2.4E+02 0.0052 29.2 7.0 60 165-226 27-93 (567)
139 PF05099 TerB: Tellurite resis 24.3 43 0.00094 26.6 1.4 51 175-225 36-89 (140)
140 PF06600 DUF1140: Protein of u 23.6 1.2E+02 0.0026 24.7 3.7 36 70-109 45-80 (107)
141 PF02181 FH2: Formin Homology 23.1 5.2E+02 0.011 24.2 8.6 83 143-236 81-163 (370)
142 PF09674 DUF2400: Protein of u 23.0 66 0.0014 29.4 2.4 61 17-89 60-121 (232)
143 PF08702 Fib_alpha: Fibrinogen 22.9 66 0.0014 27.2 2.3 24 43-66 117-140 (146)
144 PF01763 Herpes_UL6: Herpesvir 22.2 1.2E+02 0.0026 31.3 4.4 55 39-106 349-405 (557)
145 PF00440 TetR_N: Bacterial reg 22.0 21 0.00046 23.7 -0.7 21 13-33 22-42 (47)
146 PF02885 Glycos_trans_3N: Glyc 21.6 2.6E+02 0.0056 19.9 4.9 15 192-206 13-27 (66)
147 PRK00523 hypothetical protein; 20.9 1.8E+02 0.0038 22.3 4.0 32 176-207 37-69 (72)
148 PF09068 EF-hand_2: EF hand; 20.7 88 0.0019 25.8 2.5 26 165-190 100-125 (127)
149 KOG1954|consensus 20.4 1.2E+02 0.0026 30.6 3.7 55 166-222 448-502 (532)
150 PF08461 HTH_12: Ribonuclease 20.4 1.4E+02 0.003 21.7 3.3 36 175-210 10-46 (66)
No 1
>KOG2243|consensus
Probab=100.00 E-value=2.2e-90 Score=701.48 Aligned_cols=239 Identities=64% Similarity=1.025 Sum_probs=236.5
Q ss_pred cceeccccccccccccCccccChhhhhhhHHHHHHHHhhhhhhhhhhcCcccchhHHhhhhhhhhhhhcHHHHHHHHHhh
Q psy8740 14 STTVNESIMDFYWHYSSKELIDPAGKANFFKAIGVASQVFNTLSEVIQGPCTQNQQALAHSRLWDAVGGFLFLFSHMQDK 93 (252)
Q Consensus 14 ~~~l~~~~~~~yw~~~~~~~i~~~g~~~~~~~~~~~~q~f~tlte~iqgpc~~nq~~l~~~~~~d~~~g~~~~~~~~~~k 93 (252)
-|||||||||||||||||||||++|++||+|||.||||+||||||||||||+||||+||||||||||+||+|||+|||+|
T Consensus 3909 llr~qesisdfywyysgkdiide~gq~nfskai~v~kqifnslteyiqgpc~gnqqslahsrlwdavvgflhvfa~mqmk 3988 (5019)
T KOG2243|consen 3909 LLRLQESISDFYWYYSGKDIIDEQGQHNFSKAIAVAKQIFNSLTEYIQGPCIGNQQSLAHSRLWDAVVGFLHVFAHMQMK 3988 (5019)
T ss_pred HHHHHHhhhhheEeecCcchhhhhccccHHHHHHHHHHHHHHHHHHhcCCccCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchHHHHHHHHhhhhhHHHHHHHhhcCccCCcchHHHHHHHhhhcchhHHHHHHHHHHHHhccchhhHHhhhhhCC
Q psy8740 94 LSKHSSQVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAANVELILKYFDMFLKLKDLTSSASFMEIDI 173 (252)
Q Consensus 94 Ls~~~~ql~llke~~~l~~~~~~~lLSmLegn~~ng~i~~qmvd~lvessgnve~i~kfF~m~~klk~l~~~eAFk~fDk 173 (252)
||+||+||+||||+++++++||+|||||||||++||+|++||||++|||+.|||+|++||+||+|+|+++++..|+.||+
T Consensus 3989 lsqdssqiellkelldl~kdmvvmllsllegnvvngtigkqmvd~lvess~nvemilkffdmflklkdltssdtfkeydp 4068 (5019)
T KOG2243|consen 3989 LSQDSSQIELLKELLDLLKDMVVMLLSLLEGNVVNGTIGKQMVDMLVESSNNVEMILKFFDMFLKLKDLTSSDTFKEYDP 4068 (5019)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhHHHHHHHHHHcCccHHHHHHHHHHHHHHhhccccccchhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHHhcCCcchhhhHHHHHhhhcccCCCCCCCCC
Q psy8740 174 NNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLA 252 (252)
Q Consensus 174 D~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~Pa~digf~~~~l~~~l~~~~~~~~rl~ 252 (252)
||.|.||.+||+++|...+.+|+.|++.+++|+..|.|...+|++|+++||+||+|||||+||||||||||||||.||+
T Consensus 4069 dgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rfhepakdigfnvavlltnlsehmpndsrlk 4147 (5019)
T KOG2243|consen 4069 DGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEPAKDIGFNVAVLLTNLSEHMPNDSRLK 4147 (5019)
T ss_pred CCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHhcCchhhcCcchhhhhhhhHhhCCCchhHH
Confidence 9999999999999999988999999999999999999999999999999999999999999999999999999999984
No 2
>KOG0027|consensus
Probab=99.70 E-value=1.6e-16 Score=131.75 Aligned_cols=127 Identities=17% Similarity=0.326 Sum_probs=108.9
Q ss_pred chHHHHHHHHhh---------hhhHHHHHHHhhcCccCCcchHHHHHHHhhhcchhHHHHHHHHHHHHhc-cc-------
Q psy8740 99 SQVDLLKILLNL---------QKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAANVELILKYFDMFLKL-KD------- 161 (252)
Q Consensus 99 ~ql~llke~~~l---------~~~~~~~lLSmLegn~~ng~i~~qmvd~lvessgnve~i~kfF~m~~kl-k~------- 161 (252)
+++..++++|.+ ....+...++.|+.++....+...+-+....++|.+.+ -+|..++.+. ..
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~-~eF~~l~~~~~~~~~~~~~~ 83 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDF-EEFLDLMEKLGEEKTDEEAS 83 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcH-HHHHHHHHhhhccccccccc
Confidence 677888888777 78889999999999998888887777777777888888 3777766533 21
Q ss_pred -hhhHHhhhhhCCCCCCcccHHHHHHHHHh-CCCCCHHHHHHHHHhhccCCCccccHHHHHHHhcCC
Q psy8740 162 -LTSSASFMEIDINNEGWVYPKDFKEKMEQ-QKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHEP 226 (252)
Q Consensus 162 -l~~~eAFk~fDkD~dG~IS~~EL~~~L~~-~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~P 226 (252)
...++||+.||+|++|+||.+||+.+|.+ +.+.+.++++.|++.+|.|+||.|+|+||+.+|...
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 14589999999999999999999999999 478999999999999999999999999999999753
No 3
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.64 E-value=1.6e-15 Score=129.71 Aligned_cols=128 Identities=20% Similarity=0.356 Sum_probs=108.0
Q ss_pred hhhcccchHHHHHHHHhh---------hhhHHHHHHHhhcCccCCcchHHHHHHHhhhcchhHHHHHHHHHHHH-hccch
Q psy8740 93 KLSKHSSQVDLLKILLNL---------QKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAANVELILKYFDMFL-KLKDL 162 (252)
Q Consensus 93 kLs~~~~ql~llke~~~l---------~~~~~~~lLSmLegn~~ng~i~~qmvd~lvessgnve~i~kfF~m~~-klk~l 162 (252)
.+++ +|+..+|++|.+ .+..++.+++-|+.++.+..|.+.+-+.-. ..+.+.+ .+|..++. +++..
T Consensus 13 ~~t~--~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf-~~Fl~~ms~~~~~~ 88 (160)
T COG5126 13 QLTE--EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDF-PEFLTVMSVKLKRG 88 (160)
T ss_pred cCCH--HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCH-HHHHHHHHHHhccC
Confidence 3455 899999999888 678899999999999988888877666444 5577777 36777665 44433
Q ss_pred ----hhHHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 163 ----TSSASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 163 ----~~~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
..+.||+.||+|++|+|+..||+.+++.. .+++++|++.|++.+|.|+||.|+|++|++.+.
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 34799999999999999999999999995 799999999999999999999999999999775
No 4
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=99.52 E-value=5.7e-15 Score=118.96 Aligned_cols=48 Identities=44% Similarity=0.643 Sum_probs=46.3
Q ss_pred hhhhhhHHHHHHHHhhhhhhhhhhcCcccchhHHhhhhhhhhhhhcHH
Q psy8740 37 AGKANFFKAIGVASQVFNTLSEVIQGPCTQNQQALAHSRLWDAVGGFL 84 (252)
Q Consensus 37 ~g~~~~~~~~~~~~q~f~tlte~iqgpc~~nq~~l~~~~~~d~~~g~~ 84 (252)
.+++.+++.+.+++|+|+||||||||||.+||.+|++|++||++++++
T Consensus 58 ~~~~~~~~~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL 105 (109)
T PF08454_consen 58 FGKDINSDNIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLL 105 (109)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHH
Confidence 588899999999999999999999999999999999999999999987
No 5
>KOG0031|consensus
Probab=99.49 E-value=3.2e-13 Score=115.21 Aligned_cols=121 Identities=21% Similarity=0.328 Sum_probs=103.7
Q ss_pred chHHHHHHHHhh---------hhhHHHHHHHhhcCccCCcchHHHHHHHhhhcchhHHHHHHHHHHHH-hccchhh----
Q psy8740 99 SQVDLLKILLNL---------QKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAANVELILKYFDMFL-KLKDLTS---- 164 (252)
Q Consensus 99 ~ql~llke~~~l---------~~~~~~~lLSmLegn~~ng~i~~qmvd~lvessgnve~i~kfF~m~~-klk~l~~---- 164 (252)
+||..|||+|++ .+.=+-.++..|+-.+.+. .+-.++.|.+|++.+ .-|.+||. ||+..++
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~----elDaM~~Ea~gPINf-t~FLTmfGekL~gtdpe~~I 103 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDE----ELDAMMKEAPGPINF-TVFLTMFGEKLNGTDPEEVI 103 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHH----HHHHHHHhCCCCeeH-HHHHHHHHHHhcCCCHHHHH
Confidence 899999999998 4445667778888776443 444455678899999 58999885 8887765
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHh-CCCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQ-QKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~-~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
..||+.||.+++|+|..+.|+++|.+ +.+++++||++|++.+-.|..|.|+|..|+.+++
T Consensus 104 ~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 104 LNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 69999999999999999999999988 5799999999999999999999999999999987
No 6
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.32 E-value=2.8e-12 Score=99.74 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=57.8
Q ss_pred hHHhhhhhCC-CCCCcccHHHHHHHHHh-C-CCCCH-HHHHHHHHhhccCCCccccHHHHHHHhcCC
Q psy8740 164 SSASFMEIDI-NNEGWVYPKDFKEKMEQ-Q-KSYTP-EDIEFMLACCETNHDGKIDYVGFTDRFHEP 226 (252)
Q Consensus 164 ~~eAFk~fDk-D~dG~IS~~EL~~~L~~-~-~~lTe-eEI~~Li~e~D~DgDG~IdyeEFv~~m~~P 226 (252)
.+++|+.||+ +++|+|+.+||+.+|++ . ..+++ ++++.||+.+|.|+||.|+|+||+.+|..-
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4689999999 99999999999999999 5 46888 999999999999999999999999998643
No 7
>KOG0030|consensus
Probab=99.28 E-value=2e-11 Score=102.78 Aligned_cols=126 Identities=17% Similarity=0.270 Sum_probs=97.4
Q ss_pred cccchHHHHHHHHhh---------hhhHHHHHHHhhcCccCCcchHHHHHHHhhh--cchhHHHHHHHHHHHHhccchh-
Q psy8740 96 KHSSQVDLLKILLNL---------QKDMITMMLSMLEGNVVNGTIGKQMVDTLVE--SAANVELILKYFDMFLKLKDLT- 163 (252)
Q Consensus 96 ~~~~ql~llke~~~l---------~~~~~~~lLSmLegn~~ng~i~~qmvd~lve--ssgnve~i~kfF~m~~klk~l~- 163 (252)
..++|++.+||+|++ ...-++=.|+.|+.||.|..+.+-+-.+..+ +...+.| -.|..|+..+.+..
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~F-E~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDF-EEFLPMYQQVAKNKD 83 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhH-HHHHHHHHHHHhccc
Confidence 446889999999888 3344788999999999999888876654443 2233444 25666776443221
Q ss_pred --h----HHhhhhhCCCCCCcccHHHHHHHHHh-CCCCCHHHHHHHHHhhccCCCccccHHHHHHHh
Q psy8740 164 --S----SASFMEIDINNEGWVYPKDFKEKMEQ-QKSYTPEDIEFMLACCETNHDGKIDYVGFTDRF 223 (252)
Q Consensus 164 --~----~eAFk~fDkD~dG~IS~~EL~~~L~~-~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m 223 (252)
. -+-.+.||++++|+|...|||.+|.+ +.++|++|++.++.-.. |.||.|+|+.|++.+
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHI 149 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHH
Confidence 1 47899999999999999999999998 57999999999998654 568999999999754
No 8
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.25 E-value=1.4e-11 Score=87.89 Aligned_cols=59 Identities=17% Similarity=0.460 Sum_probs=51.1
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCH----HHHHHHHHhhccCCCccccHHHHHHHh
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTP----EDIEFMLACCETNHDGKIDYVGFTDRF 223 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTe----eEI~~Li~e~D~DgDG~IdyeEFv~~m 223 (252)
+++|+.||+|++|+|+.+||+.+++.. ...++ +.++.+++.+|.|+||.|+|+||+++|
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 589999999999999999999999985 34444 555666999999999999999999876
No 9
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.25 E-value=1.8e-11 Score=94.58 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=56.6
Q ss_pred hHHhhhhhC-CCCCC-cccHHHHHHHHHh-----C-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 164 SSASFMEID-INNEG-WVYPKDFKEKMEQ-----Q-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 164 ~~eAFk~fD-kD~dG-~IS~~EL~~~L~~-----~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
.+++|+.|| +||+| +|+.+||+.+|++ . ...++++++.+++.+|.|+||.|+|+||+.++..
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 468999998 89999 6999999999998 4 4678999999999999999999999999998764
No 10
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.19 E-value=4.9e-11 Score=92.56 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=53.6
Q ss_pred HHhhhhhC-CCCCC-cccHHHHHHHHHh-C-----CCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 165 SASFMEID-INNEG-WVYPKDFKEKMEQ-Q-----KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 165 ~eAFk~fD-kD~dG-~IS~~EL~~~L~~-~-----~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
.++|..|| +|++| +||.+||+.+|+. . ...++.+++++++++|.|+||.|+|+||+.+|.
T Consensus 13 ~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 13 IRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 58999999 89999 5999999999976 2 245788999999999999999999999999875
No 11
>PTZ00184 calmodulin; Provisional
Probab=99.11 E-value=1e-09 Score=87.37 Aligned_cols=112 Identities=14% Similarity=0.354 Sum_probs=78.7
Q ss_pred hhhHHHHHHHhhcCccCCcchHHHHHHHh-hhcchhHHHHHHHHHHHHhc-c----chhhHHhhhhhCCCCCCcccHHHH
Q psy8740 111 QKDMITMMLSMLEGNVVNGTIGKQMVDTL-VESAANVELILKYFDMFLKL-K----DLTSSASFMEIDINNEGWVYPKDF 184 (252)
Q Consensus 111 ~~~~~~~lLSmLegn~~ng~i~~qmvd~l-vessgnve~i~kfF~m~~kl-k----~l~~~eAFk~fDkD~dG~IS~~EL 184 (252)
....+..++..++.++.+. ....+...+ ...+|.+.+. +|..+.... + ....+.+|+.||.|++|+|+.+|+
T Consensus 29 ~~~e~~~~l~~~~~~~~~~-~~~~~~~~~d~~~~g~i~~~-ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~ 106 (149)
T PTZ00184 29 TTKELGTVMRSLGQNPTEA-ELQDMINEVDADGNGTIDFP-EFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAEL 106 (149)
T ss_pred CHHHHHHHHHHhCCCCCHH-HHHHHHHhcCcCCCCcCcHH-HHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHH
Confidence 3444555667776666432 233333322 2344556662 343333321 1 223579999999999999999999
Q ss_pred HHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 185 KEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 185 ~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
+.++... ..++.+++..+++.+|.+++|.|+|+||+.++.
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 107 RHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 9999884 568999999999999999999999999998764
No 12
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.11 E-value=2.2e-10 Score=80.95 Aligned_cols=59 Identities=17% Similarity=0.314 Sum_probs=54.4
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
+++|+.+|+|++|.|+.+|++.+++..+ .++++++.+++.+|.+++|.|+|+||+..++
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g-~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG-LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC-CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 4689999999999999999999998854 5899999999999999999999999998875
No 13
>PTZ00183 centrin; Provisional
Probab=99.10 E-value=1.5e-09 Score=87.85 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=58.2
Q ss_pred hhHHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 163 TSSASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 163 ~~~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
..+.+|+.+|++++|+|+..||..++... ..++++++..++..+|.|++|.|+|++|.++|..
T Consensus 91 ~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 91 EILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 45799999999999999999999999884 6799999999999999999999999999999864
No 14
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.09 E-value=2.5e-10 Score=88.20 Aligned_cols=61 Identities=13% Similarity=0.242 Sum_probs=54.9
Q ss_pred HHhhhhhCC-CC-CCcccHHHHHHHHHh----CCCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 165 SASFMEIDI-NN-EGWVYPKDFKEKMEQ----QKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 165 ~eAFk~fDk-D~-dG~IS~~EL~~~L~~----~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
-+.|..||. || +|+|+.+||+++|++ +.+++++|++++++.+|.|++|.|+|+||+.+|..
T Consensus 13 i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 13 VAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 378999998 77 899999999999963 46789999999999999999999999999998763
No 15
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.08 E-value=2.6e-10 Score=87.99 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=55.0
Q ss_pred hHHhhhhhCC-CC-CCcccHHHHHHHHHh------CCCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 164 SSASFMEIDI-NN-EGWVYPKDFKEKMEQ------QKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 164 ~~eAFk~fDk-D~-dG~IS~~EL~~~L~~------~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
.+++|+.||. |+ +|+|+.+||+.+|++ +..+++++++.+++.+|.|++|.|+|+||+.++.
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 3689999997 97 799999999999986 2367999999999999999999999999998875
No 16
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.07 E-value=2.5e-10 Score=87.60 Aligned_cols=64 Identities=13% Similarity=0.217 Sum_probs=56.1
Q ss_pred hHHhhhhhC-CCCCC-cccHHHHHHHHHh-CC-----CCCHHHHHHHHHhhccCCCccccHHHHHHHhcCCc
Q psy8740 164 SSASFMEID-INNEG-WVYPKDFKEKMEQ-QK-----SYTPEDIEFMLACCETNHDGKIDYVGFTDRFHEPA 227 (252)
Q Consensus 164 ~~eAFk~fD-kD~dG-~IS~~EL~~~L~~-~~-----~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~Pa 227 (252)
.+++|+.|| +|++| +|+.+||+.+|+. .+ .+++++++.+++.+|.|++|.|+|+||+.++...+
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 468999997 99999 5999999999975 32 35899999999999999999999999999887543
No 17
>KOG0027|consensus
Probab=99.07 E-value=3.3e-10 Score=93.96 Aligned_cols=61 Identities=18% Similarity=0.334 Sum_probs=58.1
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
.+++|+.||+|++|+|+.+||+.+|++. ..+|++|+..+++++|.|+||.|+++||+.+|.
T Consensus 10 l~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~ 71 (151)
T KOG0027|consen 10 LKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLME 71 (151)
T ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 3689999999999999999999999995 689999999999999999999999999999987
No 18
>KOG0028|consensus
Probab=99.05 E-value=1.7e-09 Score=92.93 Aligned_cols=114 Identities=16% Similarity=0.248 Sum_probs=94.6
Q ss_pred hhhHHHHHHHhhcCccCCcchHHHHHHHhhhcchhHHHHHHHHHHHH-hc--cch--hhHHhhhhhCCCCCCcccHHHHH
Q psy8740 111 QKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAANVELILKYFDMFL-KL--KDL--TSSASFMEIDINNEGWVYPKDFK 185 (252)
Q Consensus 111 ~~~~~~~lLSmLegn~~ng~i~~qmvd~lvessgnve~i~kfF~m~~-kl--k~l--~~~eAFk~fDkD~dG~IS~~EL~ 185 (252)
..+.+-.-+..||=++....|-+.+.|+..+++|-+.+. +|..++. ++ ++. ..+.||+.+|-|++|.|+..+|+
T Consensus 51 D~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe-~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lk 129 (172)
T KOG0028|consen 51 DVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFE-DFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLK 129 (172)
T ss_pred cHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechH-HHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHH
Confidence 445565667889999988889999999888888888773 5554432 33 232 23799999999999999999999
Q ss_pred HHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 186 EKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 186 ~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
.+++.+ .++|++|+.+||+++|.|+||.|+-+||+++|..
T Consensus 130 rvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 130 RVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 999995 7899999999999999999999999999999864
No 19
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.02 E-value=6.9e-10 Score=85.78 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=55.8
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
+++|+.||+|++|+|+.+|++++|+.. .+++++++.+++.+|.+++|.|+|+||+.+++.
T Consensus 13 ~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 13 EQIFRSLDKNQDGTVTGAQAKPILLKS-GLPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHhCCCCCCeEeHHHHHHHHHHc-CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 689999999999999999999999885 378999999999999999999999999998863
No 20
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.91 E-value=2.7e-09 Score=80.68 Aligned_cols=62 Identities=21% Similarity=0.311 Sum_probs=55.1
Q ss_pred hHHhhhhhCC--CCCCcccHHHHHHHHHh-C-CC----CCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 164 SSASFMEIDI--NNEGWVYPKDFKEKMEQ-Q-KS----YTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 164 ~~eAFk~fDk--D~dG~IS~~EL~~~L~~-~-~~----lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
.+++|+.||+ |++|+|+.+||+.+++. . .. +++++++.+++.+|.+++|.|+|++|+.++..
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 3689999999 89999999999999976 2 23 35999999999999999999999999998864
No 21
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.89 E-value=4.9e-09 Score=81.27 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=54.8
Q ss_pred HHhhhh-hCCCCCC-cccHHHHHHHHHhC------CCCCHHHHHHHHHhhccCCCccccHHHHHHHhcCCc
Q psy8740 165 SASFME-IDINNEG-WVYPKDFKEKMEQQ------KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHEPA 227 (252)
Q Consensus 165 ~eAFk~-fDkD~dG-~IS~~EL~~~L~~~------~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~Pa 227 (252)
..+|+. +|+||+| +||.+||+.+|... ...++.+++++++.+|.|+||.|+|+||+.+|..-|
T Consensus 12 ~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 12 IAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 579999 7899986 99999999999873 245679999999999999999999999999886543
No 22
>KOG0038|consensus
Probab=98.88 E-value=6.7e-09 Score=88.74 Aligned_cols=98 Identities=14% Similarity=0.384 Sum_probs=81.3
Q ss_pred CCcchHHHHHHHhhh-cchhHHHHHHHHHHHHhccchhh-----HHhhhhhCCCCCCcccHHHHHHHHHhC--CCCCHHH
Q psy8740 127 VNGTIGKQMVDTLVE-SAANVELILKYFDMFLKLKDLTS-----SASFMEIDINNEGWVYPKDFKEKMEQQ--KSYTPED 198 (252)
Q Consensus 127 ~ng~i~~qmvd~lve-ssgnve~i~kfF~m~~klk~l~~-----~eAFk~fDkD~dG~IS~~EL~~~L~~~--~~lTeeE 198 (252)
...+-.+++.+...+ +.||+-+. +|.+||.-+.++++ ..||+.||-|+|++|-..+|...+++. ..++++|
T Consensus 68 kenpfk~ri~e~FSeDG~Gnlsfd-dFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eE 146 (189)
T KOG0038|consen 68 KENPFKRRICEVFSEDGRGNLSFD-DFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEE 146 (189)
T ss_pred hcChHHHHHHHHhccCCCCcccHH-HHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHH
Confidence 345667778887766 46888884 88889987766654 589999999999999999999999985 5799998
Q ss_pred HH----HHHHhhccCCCccccHHHHHHHhcC
Q psy8740 199 IE----FMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 199 I~----~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
+. .++.++|.||||++++.||-.++.+
T Consensus 147 v~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 147 VELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 75 5667899999999999999988753
No 23
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.87 E-value=5.2e-09 Score=72.33 Aligned_cols=50 Identities=16% Similarity=0.411 Sum_probs=46.2
Q ss_pred CCCcccHHHHHHHHHh-CCC-CCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 175 NEGWVYPKDFKEKMEQ-QKS-YTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 175 ~dG~IS~~EL~~~L~~-~~~-lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
++|.|+.+||+.+|+. +.+ ++++|+..++..+|.|+||.|+|+||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 4799999999999977 457 9999999999999999999999999999875
No 24
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.84 E-value=1.5e-08 Score=67.74 Aligned_cols=59 Identities=22% Similarity=0.451 Sum_probs=54.7
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHh
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRF 223 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m 223 (252)
+.+|+.+|.|++|.|+..|++.+++.. ...+.+++..++..+|.+++|.|+|++|+..+
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 468999999999999999999999985 67889999999999999999999999999875
No 25
>KOG0034|consensus
Probab=98.83 E-value=1.7e-08 Score=88.44 Aligned_cols=96 Identities=15% Similarity=0.360 Sum_probs=68.2
Q ss_pred cchHHHHHHHhhhc-chh-HHHHHHHHHHHHhc-----cchhhHHhhhhhCCCCCCcccHHHHHHHHHhC--CCCC--HH
Q psy8740 129 GTIGKQMVDTLVES-AAN-VELILKYFDMFLKL-----KDLTSSASFMEIDINNEGWVYPKDFKEKMEQQ--KSYT--PE 197 (252)
Q Consensus 129 g~i~~qmvd~lves-sgn-ve~i~kfF~m~~kl-----k~l~~~eAFk~fDkD~dG~IS~~EL~~~L~~~--~~lT--ee 197 (252)
.+...++++..... ++. |.+. .|...+... +....+-||++||.+++|+|+.+|++.++... ...+ ++
T Consensus 65 Np~~~rI~~~f~~~~~~~~v~F~-~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e 143 (187)
T KOG0034|consen 65 NPLADRIIDRFDTDGNGDPVDFE-EFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDE 143 (187)
T ss_pred CcHHHHHHHHHhccCCCCccCHH-HHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHH
Confidence 45777888766542 233 5552 443333322 22345679999999999999999999999883 3344 54
Q ss_pred HH----HHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 198 DI----EFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 198 EI----~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
.+ +.++.++|.|+||.|+|+||.+.+..
T Consensus 144 ~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 144 QLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 44 55667899999999999999998863
No 26
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.75 E-value=2.4e-08 Score=85.77 Aligned_cols=61 Identities=10% Similarity=0.217 Sum_probs=57.5
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
.++||..||+|++|.|+..||..+|+.. ..+|++++..|+...|. |+|.|+|.+|+.+|..
T Consensus 22 lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~ 83 (160)
T COG5126 22 LKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSV 83 (160)
T ss_pred HHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHH
Confidence 4799999999999999999999999995 68999999999999999 9999999999999973
No 27
>PF14658 EF-hand_9: EF-hand domain
Probab=98.69 E-value=4e-08 Score=73.11 Aligned_cols=60 Identities=13% Similarity=0.245 Sum_probs=55.8
Q ss_pred HhhhhhCCCCCCcccHHHHHHHHHhC-C-CCCHHHHHHHHHhhccCCC-ccccHHHHHHHhcC
Q psy8740 166 ASFMEIDINNEGWVYPKDFKEKMEQQ-K-SYTPEDIEFMLACCETNHD-GKIDYVGFTDRFHE 225 (252)
Q Consensus 166 eAFk~fDkD~dG~IS~~EL~~~L~~~-~-~lTeeEI~~Li~e~D~DgD-G~IdyeEFv~~m~~ 225 (252)
-+|.+||+++.|.|..+++...|+.. . .+++++++.+.+++|+++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 37999999999999999999999994 5 7899999999999999998 99999999999864
No 28
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.67 E-value=2.2e-08 Score=76.96 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=54.9
Q ss_pred HHhhhhhCCC--CCCcccHHHHHHHHHh-C-CCCC----HHHHHHHHHhhccCCCccccHHHHHHHhcCCcc
Q psy8740 165 SASFMEIDIN--NEGWVYPKDFKEKMEQ-Q-KSYT----PEDIEFMLACCETNHDGKIDYVGFTDRFHEPAK 228 (252)
Q Consensus 165 ~eAFk~fDkD--~dG~IS~~EL~~~L~~-~-~~lT----eeEI~~Li~e~D~DgDG~IdyeEFv~~m~~Pa~ 228 (252)
-..|+.|+.. ++|+|+.+||+.+|.. . ..++ +++++.+++.+|.|++|.|+|+||+.++...++
T Consensus 11 ~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 11 INVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 4689999865 5899999999999974 4 4566 899999999999999999999999999875443
No 29
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.65 E-value=6e-08 Score=78.97 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=52.0
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
..-+|..+|+|+||+||.+||..++ ....+..+..++..+|.|+||.|+++||...+..
T Consensus 50 l~w~F~~lD~d~DG~Ls~~EL~~~~---l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 50 VGWMFNQLDGNYDGKLSHHELAPIR---LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH---ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 4679999999999999999999876 2345678899999999999999999999999843
No 30
>PTZ00184 calmodulin; Provisional
Probab=98.58 E-value=1.5e-07 Score=74.80 Aligned_cols=60 Identities=18% Similarity=0.345 Sum_probs=47.3
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
+.+|+.+|.|++|.|+..||..++... ..++.+++..+++.+|.+++|.|+|++|+..+.
T Consensus 14 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 74 (149)
T PTZ00184 14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMA 74 (149)
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHH
Confidence 467888888888888888888887764 456777888888888888888888888887665
No 31
>KOG0028|consensus
Probab=98.54 E-value=2e-07 Score=80.31 Aligned_cols=82 Identities=24% Similarity=0.330 Sum_probs=70.0
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHh-CCCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC------Ccchh--hh---
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQ-QKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE------PAKEI--GF--- 232 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~-~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~------Pa~di--gf--- 232 (252)
+++|..||.+++|+|+.+||+.+|++ +..+..+||..|+.+.|.++.|.|+|++|...|+. |-.|| .|
T Consensus 36 ~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~ 115 (172)
T KOG0028|consen 36 KEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLF 115 (172)
T ss_pred HHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcc
Confidence 68999999999999999999999999 47899999999999999999999999999999863 55555 33
Q ss_pred -----------HHHHHhhhcccCCC
Q psy8740 233 -----------NLAVLLTNLSEHMP 246 (252)
Q Consensus 233 -----------~~~~l~~~l~~~~~ 246 (252)
|+.++-.-|+|.+.
T Consensus 116 D~D~~Gkis~~~lkrvakeLgenlt 140 (172)
T KOG0028|consen 116 DDDKTGKISQRNLKRVAKELGENLT 140 (172)
T ss_pred cccCCCCcCHHHHHHHHHHhCcccc
Confidence 46777777777553
No 32
>PTZ00183 centrin; Provisional
Probab=98.54 E-value=2.3e-07 Score=74.99 Aligned_cols=58 Identities=29% Similarity=0.440 Sum_probs=32.4
Q ss_pred HhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHh
Q psy8740 166 ASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRF 223 (252)
Q Consensus 166 eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m 223 (252)
.+|+.+|+|++|+|+..||..+++.. ...+.+++..+++.+|.+++|.|+|+||+..+
T Consensus 21 ~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 79 (158)
T PTZ00183 21 EAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIM 79 (158)
T ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 45555555555555555555555543 23455555555555555555555555555443
No 33
>KOG0037|consensus
Probab=98.23 E-value=7.5e-06 Score=73.50 Aligned_cols=110 Identities=13% Similarity=0.219 Sum_probs=77.3
Q ss_pred hhhhHHHHHHHhhcCccCCcchHHHHHHHhh-hcchhHHHHHHHHH-HHHhccchhhHHhhhhhCCCCCCcccHHHHHHH
Q psy8740 110 LQKDMITMMLSMLEGNVVNGTIGKQMVDTLV-ESAANVELILKYFD-MFLKLKDLTSSASFMEIDINNEGWVYPKDFKEK 187 (252)
Q Consensus 110 l~~~~~~~lLSmLegn~~ng~i~~qmvd~lv-essgnve~i~kfF~-m~~klk~l~~~eAFk~fDkD~dG~IS~~EL~~~ 187 (252)
+..+++.-.||......=+=.-.+.|+.+.- +.+|-+.+ +.|. ..+.+++ =+.+|+.||+|++|.|+..||+.+
T Consensus 74 i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f--~EF~~Lw~~i~~--Wr~vF~~~D~D~SG~I~~sEL~~A 149 (221)
T KOG0037|consen 74 ILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGF--KEFKALWKYINQ--WRNVFRTYDRDRSGTIDSSELRQA 149 (221)
T ss_pred ccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCH--HHHHHHHHHHHH--HHHHHHhcccCCCCcccHHHHHHH
Confidence 3445555555555555544455555555442 22344444 3333 2232222 268999999999999999999999
Q ss_pred HHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHh
Q psy8740 188 MEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRF 223 (252)
Q Consensus 188 L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m 223 (252)
+... ..++++=++.+++.+|.-++|.|+|++|+...
T Consensus 150 l~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~cc 186 (221)
T KOG0037|consen 150 LTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCC 186 (221)
T ss_pred HHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHH
Confidence 9994 79999999999999999989999999998754
No 34
>KOG0041|consensus
Probab=98.23 E-value=2.2e-06 Score=76.53 Aligned_cols=61 Identities=21% Similarity=0.382 Sum_probs=56.6
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
...+|+.||.|.||+|+..||+..|..+ .+.|-=-+..||++.|.|.||+|+|.||+-+++
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 4679999999999999999999999995 577888899999999999999999999999886
No 35
>KOG0031|consensus
Probab=98.22 E-value=3e-06 Score=72.88 Aligned_cols=62 Identities=24% Similarity=0.483 Sum_probs=55.2
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC------Ccchh
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE------PAKEI 230 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~------Pa~di 230 (252)
++||..+|.|+||.|..++|+..+.+. ...+++||+.||+++ .|.|+|.-|+.+|.+ |...|
T Consensus 35 KEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I 103 (171)
T KOG0031|consen 35 KEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVI 103 (171)
T ss_pred HHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHH
Confidence 799999999999999999999999995 678999999999986 578999999999963 65555
No 36
>KOG0036|consensus
Probab=98.14 E-value=1.1e-05 Score=78.33 Aligned_cols=111 Identities=15% Similarity=0.230 Sum_probs=90.7
Q ss_pred HHHhhcCc-cCCcchHHHHHHHhhhcchhHHHHHHHHHHHHhccchhhHHhhhhhCCCCCCcccHHHHHHHHHhC-CCCC
Q psy8740 118 MLSMLEGN-VVNGTIGKQMVDTLVESAANVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQ-KSYT 195 (252)
Q Consensus 118 lLSmLegn-~~ng~i~~qmvd~lvessgnve~i~kfF~m~~klk~l~~~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lT 195 (252)
.+.-|.+. +..+.+...+-+..++..|.|+. .-|..+..-++..+.+.|+..|.++||.|+..|+...++.. -+++
T Consensus 39 ~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy--~eF~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~ 116 (463)
T KOG0036|consen 39 GLEKLDHPKPNYEAAKMLFSAMDANRDGRVDY--SEFKRYLDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLS 116 (463)
T ss_pred HHHhcCCCCCchHHHHHHHHhcccCcCCcccH--HHHHHHHHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccC
Confidence 34444444 55556666666666777788887 56777877888889999999999999999999999999984 6899
Q ss_pred HHHHHHHHHhhccCCCccccHHHHHHHhc-CCcchh
Q psy8740 196 PEDIEFMLACCETNHDGKIDYVGFTDRFH-EPAKEI 230 (252)
Q Consensus 196 eeEI~~Li~e~D~DgDG~IdyeEFv~~m~-~Pa~di 230 (252)
+++.+.+++.+|.|+++.|+++||-+.+. -|..+|
T Consensus 117 de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i 152 (463)
T KOG0036|consen 117 DEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDL 152 (463)
T ss_pred HHHHHHHHHHhccCCCeeeccHHHHhhhhcCChhHH
Confidence 99999999999999999999999998775 465554
No 37
>KOG0044|consensus
Probab=98.13 E-value=2.3e-05 Score=69.28 Aligned_cols=60 Identities=17% Similarity=0.349 Sum_probs=49.5
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhC----CC-------C-CHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQ----KS-------Y-TPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~----~~-------l-TeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
+=+|+.||.||+|+||.+|+-.++++. +. . .++-++.+++.+|.|+||.|+++||.....
T Consensus 103 ~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 103 KWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred hhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 357999999999999999999888762 11 1 235568889999999999999999998764
No 38
>PLN02964 phosphatidylserine decarboxylase
Probab=98.13 E-value=1.6e-05 Score=81.06 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=56.4
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
+++|+.+|+|++|.|+.+||..+|... ...+++++..+++.+|.|++|.|+++||.+++..
T Consensus 182 ~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 182 RRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 578999999999999999999999875 5678999999999999999999999999999875
No 39
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.07 E-value=3.5e-06 Score=52.86 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.7
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
+++|+.||+|+||+|+.+||+.+|++
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 57999999999999999999999875
No 40
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.93 E-value=3.4e-05 Score=60.76 Aligned_cols=58 Identities=17% Similarity=0.350 Sum_probs=48.4
Q ss_pred HhhhhhCCCCCCcccHHHHHHHHHh-C----C-CCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 166 ASFMEIDINNEGWVYPKDFKEKMEQ-Q----K-SYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 166 eAFk~fDkD~dG~IS~~EL~~~L~~-~----~-~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
.+|..|-. +.|.++.+||+..|++ . . .-.++.++.+|+..|.|+||.|||.||+.++.
T Consensus 12 ~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 12 LTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 57777773 4579999999999977 2 2 23578899999999999999999999999875
No 41
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.89 E-value=3.4e-05 Score=74.59 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=43.7
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
+.+|+.||+|+||+|+.+||.. ++.++..+|.|+||.|+|+||...+.
T Consensus 337 ~~aF~~~D~dgdG~Is~~E~~~------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 337 QEIFRLYDLDGDGFITREEWLG------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred HHHHHHhCCCCCCcCcHHHHHH------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 6999999999999999999842 57899999999999999999998765
No 42
>KOG0377|consensus
Probab=97.85 E-value=5.8e-05 Score=74.19 Aligned_cols=62 Identities=24% Similarity=0.379 Sum_probs=55.0
Q ss_pred hhHHhhhhhCCCCCCcccHHHHHHHHHh----C-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 163 TSSASFMEIDINNEGWVYPKDFKEKMEQ----Q-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 163 ~~~eAFk~fDkD~dG~IS~~EL~~~L~~----~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
.+.-+|+.+|+|++|.||.+||+.+.+- . ..+++++|.++-+.+|.|+||.||+.||++.|.
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 3467899999999999999999988654 1 468999999999999999999999999999874
No 43
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.83 E-value=1.7e-05 Score=49.77 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=25.3
Q ss_pred HHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 198 DIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 198 EI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
|++.+++.+|.|+||.|+|+||+.+|+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 688999999999999999999999875
No 44
>KOG0030|consensus
Probab=97.79 E-value=2.2e-05 Score=66.54 Aligned_cols=61 Identities=11% Similarity=0.241 Sum_probs=55.3
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccC--CCccccHHHHHHHhcC
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETN--HDGKIDYVGFTDRFHE 225 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~D--gDG~IdyeEFv~~m~~ 225 (252)
+++|..||+.+||+|+......+|+.. .++|+.|+...+...+.+ +--.|+|++|+-++++
T Consensus 14 ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~ 77 (152)
T KOG0030|consen 14 KEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQ 77 (152)
T ss_pred HHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHH
Confidence 799999999999999999999999995 799999999999999888 4567999999988863
No 45
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.77 E-value=2.4e-05 Score=48.86 Aligned_cols=25 Identities=12% Similarity=0.399 Sum_probs=22.8
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHH
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKME 189 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~ 189 (252)
+.+|+.||+|++|+|+.+||+.+|+
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 5799999999999999999999998
No 46
>PLN02964 phosphatidylserine decarboxylase
Probab=97.76 E-value=4.1e-05 Score=78.12 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=51.0
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHhCC--CCCHHH---HHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQQK--SYTPED---IEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~~~--~lTeeE---I~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
.+++|..||+|++|+| ++.++++.+ .+++++ ++.+++.+|.|+||.|+|+||+.+|.
T Consensus 145 lkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~ 206 (644)
T PLN02964 145 ACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIK 206 (644)
T ss_pred HHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 3689999999999998 888898843 788887 89999999999999999999998886
No 47
>KOG0044|consensus
Probab=97.76 E-value=0.00011 Score=64.98 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=52.0
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
..+|+.||+|+||+|+..||-.++... ..-.++.+.-.++..|.||||.|+++|+++++.
T Consensus 67 ~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~ 127 (193)
T KOG0044|consen 67 ELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQ 127 (193)
T ss_pred HHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHH
Confidence 789999999999999999988888763 334466678889999999999999999998875
No 48
>KOG3533|consensus
Probab=97.64 E-value=7.6e-05 Score=80.48 Aligned_cols=100 Identities=20% Similarity=0.391 Sum_probs=68.0
Q ss_pred cCccccChhhhhhhHHHHHHHHhhhhhhhhhhcCcccchhHHhhhhhhhhhhhcHHHHHHHHHhhhhc-ccchHHHHHHH
Q psy8740 29 SSKELIDPAGKANFFKAIGVASQVFNTLSEVIQGPCTQNQQALAHSRLWDAVGGFLFLFSHMQDKLSK-HSSQVDLLKIL 107 (252)
Q Consensus 29 ~~~~~i~~~g~~~~~~~~~~~~q~f~tlte~iqgpc~~nq~~l~~~~~~d~~~g~~~~~~~~~~kLs~-~~~ql~llke~ 107 (252)
|-+.-..+.|-|-.-+......|-..||||||||||-+||..+|.-.- +|+.-|.+-+...+.- -...++|-
T Consensus 1990 STtGgLGllGlyInE~NvaLinQtLetLTEyCQGPCHENQnciathEs----NGldII~aLiLNdInPLgk~rMdLv--- 2062 (2706)
T KOG3533|consen 1990 STTGGLGLLGLYINEHNVALINQTLETLTEYCQGPCHENQNCIATHES----NGLDIIIALILNDINPLGKDRMDLV--- 2062 (2706)
T ss_pred CCCCCceeeeeeeccchhHHHHHHHHHHHHHhcCCccCCcceeeeccc----CCchhhHHHHhccCCchhhhHHHHH---
Confidence 344455667777777888899999999999999999999999987542 6777777777644332 00334443
Q ss_pred HhhhhhHHHHHHHhhcCccCCcchHHHHH
Q psy8740 108 LNLQKDMITMMLSMLEGNVVNGTIGKQMV 136 (252)
Q Consensus 108 ~~l~~~~~~~lLSmLegn~~ng~i~~qmv 136 (252)
+.+...-+-.||..+|-+- +|+=..+++
T Consensus 2063 LelKnnASKLLLAiMESRh-DsENAeRiL 2090 (2706)
T KOG3533|consen 2063 LELKNNASKLLLAIMESRH-DSENAERIL 2090 (2706)
T ss_pred HHHhhhHHHHHHHHHHhcc-cchhHHHHH
Confidence 3334445667888888887 444444443
No 49
>KOG0037|consensus
Probab=97.52 E-value=0.00018 Score=64.72 Aligned_cols=60 Identities=15% Similarity=0.439 Sum_probs=55.0
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhC--CCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQ--KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~--~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
...|...|+|+.|.|+.+||+.+|.++ ..++.+-+..||..+|.+.+|+|++.||.++..
T Consensus 60 ~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~ 121 (221)
T KOG0037|consen 60 AGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWK 121 (221)
T ss_pred HHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Confidence 468999999999999999999999975 578999999999999999999999999998764
No 50
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.41 E-value=0.00013 Score=44.10 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=20.3
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHH
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKM 188 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L 188 (252)
+.+|+.+|+|+||.||.+|+++++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 468999999999999999998764
No 51
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.35 E-value=0.00059 Score=54.65 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=50.4
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
...|+..|+ ++|+|+.++.+.++.+. +++.+.+..+..-+|.|+||.++++||+-.|+
T Consensus 13 ~~~F~~l~~-~~g~isg~~a~~~f~~S-~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 13 DQIFQSLDP-QDGKISGDQAREFFMKS-GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHCTSS-STTEEEHHHHHHHHHHT-TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHhcCC-CCCeEeHHHHHHHHHHc-CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 578999985 68999999999988664 48889999999999999999999999998775
No 52
>KOG0046|consensus
Probab=97.34 E-value=0.00035 Score=69.75 Aligned_cols=61 Identities=20% Similarity=0.466 Sum_probs=54.6
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHhCC----CCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQQK----SYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~~~----~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
+++.|...| |++|+|+..|+..++...+ ....+|+++++...+.|.+|.|+|+||+..+.+
T Consensus 21 l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 21 LKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 478999999 9999999999999998743 345899999999999999999999999997753
No 53
>KOG0036|consensus
Probab=97.21 E-value=0.00066 Score=66.20 Aligned_cols=61 Identities=23% Similarity=0.441 Sum_probs=53.0
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHhC-C-CCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQQ-K-SYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~~-~-~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
-+..|+.||.+++|.|+.+++.+.+.+. . +...+-...+++.+|.|.||.+||+||.+-+.
T Consensus 16 ~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~ 78 (463)
T KOG0036|consen 16 IRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD 78 (463)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH
Confidence 3679999999999999999999999885 3 35567778889999999999999999988665
No 54
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.20 E-value=0.0003 Score=56.90 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=42.2
Q ss_pred chhhHHhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHH
Q psy8740 161 DLTSSASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTD 221 (252)
Q Consensus 161 ~l~~~eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~ 221 (252)
.-+..=-|..+|.|+||.++..||+.+.... ...+.=+...++.+|.|+||.|+..|+..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3344567999999999999999998775433 33444578899999999999999999864
No 55
>KOG4065|consensus
Probab=97.11 E-value=0.00089 Score=55.63 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=45.3
Q ss_pred hhhhhCCCCCCcccHHHHHHHHHh-------C-C--C-CCHHHHHHHHH----hhccCCCccccHHHHHHH
Q psy8740 167 SFMEIDINNEGWVYPKDFKEKMEQ-------Q-K--S-YTPEDIEFMLA----CCETNHDGKIDYVGFTDR 222 (252)
Q Consensus 167 AFk~fDkD~dG~IS~~EL~~~L~~-------~-~--~-lTeeEI~~Li~----e~D~DgDG~IdyeEFv~~ 222 (252)
-|++.|-|++|+|+.=||.++++- + . + .++.|++.|+. .-|.|+||.|||.||+++
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 578889999999999999998853 2 1 2 36778777765 568999999999999875
No 56
>KOG4223|consensus
Probab=96.91 E-value=0.0012 Score=62.47 Aligned_cols=96 Identities=15% Similarity=0.245 Sum_probs=67.0
Q ss_pred HHhhhcchhHHHHHHHHH-HHHhccc-------hhhHHhhh-hhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhh
Q psy8740 137 DTLVESAANVELILKYFD-MFLKLKD-------LTSSASFM-EIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACC 206 (252)
Q Consensus 137 d~lvessgnve~i~kfF~-m~~klk~-------l~~~eAFk-~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~ 206 (252)
+..-...|-|++. +|+. |+..-.. ++.++.|. .+|+|+||+++.+|++.-+-=. ......|...|+.++
T Consensus 208 d~Dkn~DG~I~~e-Efigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~ea 286 (325)
T KOG4223|consen 208 DIDKNGDGKISLE-EFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEA 286 (325)
T ss_pred hcccCCCCceeHH-HHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhh
Confidence 3333345666663 5544 4443221 12355554 5599999999999999665432 356789999999999
Q ss_pred ccCCCccccHHHHHH----HhcCCcchhhhH
Q psy8740 207 ETNHDGKIDYVGFTD----RFHEPAKEIGFN 233 (252)
Q Consensus 207 D~DgDG~IdyeEFv~----~m~~Pa~digf~ 233 (252)
|.|+||+++++|-+. ++...|+++|=.
T Consensus 287 D~dkD~kLs~eEIl~~~d~FvgSqAtdyge~ 317 (325)
T KOG4223|consen 287 DEDKDGKLSKEEILEHYDVFVGSQATDYGED 317 (325)
T ss_pred ccCccccccHHHHhhCcceeeeeecccchhh
Confidence 999999999999986 345788888743
No 57
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.82 E-value=0.0014 Score=39.62 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.1
Q ss_pred HHHHHHhhccCCCccccHHHHHHHh
Q psy8740 199 IEFMLACCETNHDGKIDYVGFTDRF 223 (252)
Q Consensus 199 I~~Li~e~D~DgDG~IdyeEFv~~m 223 (252)
|+..++.+|.|+||.|+++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 58
>KOG4223|consensus
Probab=96.72 E-value=0.0018 Score=61.21 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=51.6
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHh--CCCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQ--QKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~--~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
++-|+.-|.|+||.+|.+||...|.= ...+.+-=|.+-|...|.|+||+|+++||+.=|.
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~ 227 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLY 227 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHh
Confidence 58899999999999999999998854 2345666678888999999999999999997664
No 59
>KOG0040|consensus
Probab=96.52 E-value=0.0069 Score=66.77 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=61.5
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhC-CCC--C-----HHHHHHHHHhhccCCCccccHHHHHHHhcC-Ccchh--hhH
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSY--T-----PEDIEFMLACCETNHDGKIDYVGFTDRFHE-PAKEI--GFN 233 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~l--T-----eeEI~~Li~e~D~DgDG~IdyeEFv~~m~~-Pa~di--gf~ 233 (252)
+.+|++||++++|+++.++|+.+|+++ ..+ - +++++.++...|++.+|.|...+|++.|-. .++.| -=-
T Consensus 2256 s~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~e 2335 (2399)
T KOG0040|consen 2256 SMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEE 2335 (2399)
T ss_pred HHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHH
Confidence 579999999999999999999999994 343 2 348999999999999999999999998854 33333 113
Q ss_pred HHHHhhhccc
Q psy8740 234 LAVLLTNLSE 243 (252)
Q Consensus 234 ~~~l~~~l~~ 243 (252)
+-.-++||++
T Consensus 2336 IE~AfraL~a 2345 (2399)
T KOG0040|consen 2336 IEDAFRALDA 2345 (2399)
T ss_pred HHHHHHHhhc
Confidence 3344556655
No 60
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.17 E-value=0.0062 Score=34.31 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=21.9
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
+.+|+.+|.+++|.|+.+||..++++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 46888999999999999999888764
No 61
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.06 E-value=0.0069 Score=37.62 Aligned_cols=27 Identities=15% Similarity=0.280 Sum_probs=23.6
Q ss_pred HHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 198 DIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 198 EI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
++..+++.+|.|+||.|+++||..+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467899999999999999999999875
No 62
>KOG2643|consensus
Probab=96.01 E-value=0.0032 Score=61.90 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=47.5
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHH---HhCCC--------CC-----HHHHHH--HHHhhccCCCccccHHHHHHHhcCC
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKM---EQQKS--------YT-----PEDIEF--MLACCETNHDGKIDYVGFTDRFHEP 226 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L---~~~~~--------lT-----eeEI~~--Li~e~D~DgDG~IdyeEFv~~m~~P 226 (252)
+-||++||.||||-|+.+||..++ +++.. ++ ..++.. ...-+..+++|+++++||.+.+.+-
T Consensus 236 ~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~L 315 (489)
T KOG2643|consen 236 RIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENL 315 (489)
T ss_pred eeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHHH
Confidence 579999999999999999998876 22211 11 123333 2235789999999999999998764
Q ss_pred cchh
Q psy8740 227 AKEI 230 (252)
Q Consensus 227 a~di 230 (252)
..||
T Consensus 316 q~Ei 319 (489)
T KOG2643|consen 316 QEEI 319 (489)
T ss_pred HHHH
Confidence 4444
No 63
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.83 E-value=0.025 Score=40.29 Aligned_cols=46 Identities=13% Similarity=0.291 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 179 VYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 179 IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
++.+|++..|+.. -.+.++-+..+++++|.+++|.++-+||..++.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 5788999999986 578899999999999999999999999988753
No 64
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.82 E-value=0.02 Score=42.76 Aligned_cols=62 Identities=16% Similarity=0.347 Sum_probs=51.9
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHh-C-C-CCCHHHHHHHHHhhccC----CCccccHHHHHHHhcCCc
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQ-Q-K-SYTPEDIEFMLACCETN----HDGKIDYVGFTDRFHEPA 227 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~-~-~-~lTeeEI~~Li~e~D~D----gDG~IdyeEFv~~m~~Pa 227 (252)
+.+|+.|-. +.+++|.++|++.|+. + . ..+.+++..+|..+..+ ..+.+++++|.+.+..|.
T Consensus 3 ~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 3 EEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 468889955 8999999999999987 4 3 57999999999987655 478999999999997764
No 65
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.62 E-value=0.011 Score=33.22 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=24.0
Q ss_pred HHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 198 DIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 198 EI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
|+..+++.+|.+++|.|++.+|..++.
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 467889999999999999999998875
No 66
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=95.58 E-value=0.15 Score=41.56 Aligned_cols=102 Identities=22% Similarity=0.356 Sum_probs=65.6
Q ss_pred cccchhHHhhhhhhhhhhhcHHHHHHHHHhhhhc----ccchHHHHHHHHhhhhhHHHHHHHhhcCccCCcchHHHHHHH
Q psy8740 63 PCTQNQQALAHSRLWDAVGGFLFLFSHMQDKLSK----HSSQVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDT 138 (252)
Q Consensus 63 pc~~nq~~l~~~~~~d~~~g~~~~~~~~~~kLs~----~~~ql~llke~~~l~~~~~~~lLSmLegn~~ng~i~~qmvd~ 138 (252)
||+....+=...|+.| =|-+++..+++ ...+..+-+.+....+..+.+.-..|=.|. ||.|...=+..
T Consensus 1 ~C~~~el~~~~~R~~d-------W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~F~~lD~d~-DG~Ls~~EL~~ 72 (116)
T cd00252 1 ECTDQELADFPLRLRD-------WFKNVHEDLKERDELEKHKLRLKKSLYPMCKDPVGWMFNQLDGNY-DGKLSHHELAP 72 (116)
T ss_pred CCcHHHHHHHHHHHHH-------HHHHHHHHHhhcccchhhhchhhhhhhHHHHHHHHHHHHHHCCCC-CCcCCHHHHHH
Confidence 5777555555566633 33444444443 123344444455667888999999998884 99887754443
Q ss_pred hhhcchhHHHHHHHHHHHHhccchhhHHhhhhhCCCCCCcccHHHHHHHH
Q psy8740 139 LVESAANVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKM 188 (252)
Q Consensus 139 lvessgnve~i~kfF~m~~klk~l~~~eAFk~fDkD~dG~IS~~EL~~~L 188 (252)
+.. ... +.-....|+.+|.|+||.||.+|+..++
T Consensus 73 ~~l-~~~---------------e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 73 IRL-DPN---------------EHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHc-cch---------------HHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 321 001 1112468899999999999999999998
No 67
>KOG0034|consensus
Probab=95.19 E-value=0.089 Score=46.32 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=49.8
Q ss_pred HHhhhhhCCCCCCc-ccHHHHHHHHHhC-CCCC-HHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 165 SASFMEIDINNEGW-VYPKDFKEKMEQQ-KSYT-PEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 165 ~eAFk~fDkD~dG~-IS~~EL~~~L~~~-~~lT-eeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
..+|+.||++++|. |+.+++-..+.-. .+-+ ++.++..++-+|.+++|.|+.+|+..++.
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~ 131 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILR 131 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence 67899999999988 9999999998774 3333 35888899999999999999999987765
No 68
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=95.13 E-value=0.024 Score=38.70 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=24.4
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
...+|+.+|.|++|+|+.+||..+|..
T Consensus 27 ~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 27 VDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 468999999999999999999998864
No 69
>KOG4251|consensus
Probab=94.70 E-value=0.015 Score=53.97 Aligned_cols=59 Identities=14% Similarity=0.336 Sum_probs=45.7
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHh-C-C--CCCHHHHHHHHHhhccCCCccccHHHHHHHh
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQ-Q-K--SYTPEDIEFMLACCETNHDGKIDYVGFTDRF 223 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~-~-~--~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m 223 (252)
..+|+..|.|.||+||.+|+++-+.. . . .-+.+|-+..++..|+|+||.|.|+||.--|
T Consensus 104 mviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 104 MVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 47899999999999999999876543 2 2 2233444566788999999999999997544
No 70
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=94.57 E-value=0.032 Score=39.30 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.7
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHH
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKM 188 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L 188 (252)
..+|+.+|+|+||.|+.+||..+|
T Consensus 43 ~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 43 DQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHhCCCCcCCCcHHHHhccC
Confidence 467999999999999999998875
No 71
>KOG4251|consensus
Probab=94.35 E-value=0.11 Score=48.39 Aligned_cols=54 Identities=20% Similarity=0.363 Sum_probs=47.7
Q ss_pred hhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHH
Q psy8740 169 MEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDR 222 (252)
Q Consensus 169 k~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~ 222 (252)
..+|.|+||.+|.+||...+.-+ ...+-.|+..+|...|.++|.+++.+|.+++
T Consensus 288 ElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 288 ELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 66899999999999999987554 5677889999999999999999999998765
No 72
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.11 E-value=0.015 Score=43.67 Aligned_cols=52 Identities=23% Similarity=0.503 Sum_probs=38.2
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCC-------CccccHHHHHHHh
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNH-------DGKIDYVGFTDRF 223 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~Dg-------DG~IdyeEFv~~m 223 (252)
.++||.+ .++.++||..||++.| ++++++.+++.+..-. -|..||..|++.+
T Consensus 9 ~~aFr~l-A~~KpyVT~~dLr~~l------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 9 EEAFRAL-AGGKPYVTEEDLRRSL------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp HHHHHHH-CTSSSCEEHHHHHHHS-------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred HHHHHHH-HcCCCcccHHHHHHHc------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 5799999 7888999999999984 4455677776554322 2679999998643
No 73
>KOG1955|consensus
Probab=91.80 E-value=0.24 Score=49.99 Aligned_cols=59 Identities=15% Similarity=0.350 Sum_probs=52.5
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
-.-|+..-+|.+|+|+..--+..+++. ++.-+|+..|.+-+|.|.||.++..||++.||
T Consensus 234 vnQFrtvQpDp~gfisGsaAknFFtKS-klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 234 VNQFRTVQPDPHGFISGSAAKNFFTKS-KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HhhhhcccCCcccccccHHHHhhhhhc-cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 367999999999999998877777653 57889999999999999999999999999987
No 74
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=91.07 E-value=1.2 Score=43.33 Aligned_cols=26 Identities=23% Similarity=0.574 Sum_probs=24.0
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
..+|+.+|.|+||.|+.+||+.++..
T Consensus 360 ~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 360 DAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 57899999999999999999999865
No 75
>KOG2562|consensus
Probab=90.03 E-value=0.42 Score=47.61 Aligned_cols=56 Identities=21% Similarity=0.446 Sum_probs=42.6
Q ss_pred hhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHH----hhccCCCccccHHHHHHHhc
Q psy8740 167 SFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLA----CCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 167 AFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~----e~D~DgDG~IdyeEFv~~m~ 224 (252)
-|-.+|+|+||.|+.++|.+-=. +-+|.-=++.+++ ..-.-.+|+++|++|+.++-
T Consensus 283 kFweLD~Dhd~lidk~~L~ry~d--~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~Fil 342 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRYGD--HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFIL 342 (493)
T ss_pred HHhhhccccccccCHHHHHHHhc--cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHH
Confidence 48888999999999999876521 3456666788887 34456688899999998774
No 76
>KOG1029|consensus
Probab=89.72 E-value=0.39 Score=50.71 Aligned_cols=60 Identities=15% Similarity=0.300 Sum_probs=52.6
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
.+..|...|+...|++|...-+.+|-. ..++...+..+.--.|.|+||+++.+||+-.|+
T Consensus 197 Y~QlFNa~DktrsG~Lsg~qaR~aL~q-S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 197 YRQLFNALDKTRSGYLSGQQARSALGQ-SGLPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHHhhhcccccccccccHHHHHHHHh-cCCchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 479999999999999999998888754 347778888888899999999999999997776
No 77
>KOG4666|consensus
Probab=88.27 E-value=0.43 Score=46.02 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=59.8
Q ss_pred cchhHHHHHHHHHHHHhccch-----hhHHhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccH
Q psy8740 142 SAANVELILKYFDMFLKLKDL-----TSSASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDY 216 (252)
Q Consensus 142 ssgnve~i~kfF~m~~klk~l-----~~~eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~Idy 216 (252)
.+||++++ +.+....-++.. ..+-||+.|+.+-||++...+|.-+++..-...+=.+-.++...+...+|+|.|
T Consensus 272 ~tg~~D~r-e~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~~i~q~d~~ki~~ 350 (412)
T KOG4666|consen 272 TTGNGDYR-ETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFPSIEQKDDPKIYA 350 (412)
T ss_pred CCCcccHH-HHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccchhhhcccCcceeH
Confidence 35778775 333322223221 237999999999999999999999997731122223557788889899999999
Q ss_pred HHHHHHhc-CCc
Q psy8740 217 VGFTDRFH-EPA 227 (252)
Q Consensus 217 eEFv~~m~-~Pa 227 (252)
++|-+++. .|+
T Consensus 351 ~~f~~fa~~~p~ 362 (412)
T KOG4666|consen 351 SNFRKFAATEPN 362 (412)
T ss_pred HHHHHHHHhCch
Confidence 99988764 443
No 78
>KOG0042|consensus
Probab=87.13 E-value=0.69 Score=47.40 Aligned_cols=61 Identities=11% Similarity=0.231 Sum_probs=56.3
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
+.-|..+|.|+.|+++..+..++|+.. .+.+++-..+++.++|.+-+|.+...||..+|+.
T Consensus 596 ~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 596 KTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 467889999999999999999999996 4899999999999999999999999999998874
No 79
>KOG2643|consensus
Probab=86.74 E-value=3 Score=41.61 Aligned_cols=94 Identities=14% Similarity=0.164 Sum_probs=63.9
Q ss_pred chHHHHHHHhhhcchhHHHHHHHHH-HHHhccchhhHHhhhhhCCCCCCcccHHHHHHHHHhCC--CCC--HHHHHHHHH
Q psy8740 130 TIGKQMVDTLVESAANVELILKYFD-MFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQK--SYT--PEDIEFMLA 204 (252)
Q Consensus 130 ~i~~qmvd~lvessgnve~i~kfF~-m~~klk~l~~~eAFk~fDkD~dG~IS~~EL~~~L~~~~--~lT--eeEI~~Li~ 204 (252)
.+.+-++.-...-.|+-....+-|- .+-.|+....+.-|..||+..+|.|+..+|.+.|-... +.. ...+..+-+
T Consensus 285 ~~nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~ 364 (489)
T KOG2643|consen 285 EVNSALLTYFFGKRGNGKLSIDEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKE 364 (489)
T ss_pred hhhhhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHH
Confidence 3334455555555566555545555 34467777778889999999999999999999886632 222 224556666
Q ss_pred hhccCCCccccHHHHHHHhc
Q psy8740 205 CCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 205 e~D~DgDG~IdyeEFv~~m~ 224 (252)
.++.+ +-.|+++||.+.++
T Consensus 365 kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 365 KFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred hccCC-CCCcCHHHHHHHHH
Confidence 77776 44599999988765
No 80
>KOG2562|consensus
Probab=86.53 E-value=0.86 Score=45.52 Aligned_cols=118 Identities=16% Similarity=0.241 Sum_probs=74.5
Q ss_pred CCcchHHHHHHHhhh-------cchhHHHHHHHHHHHH-hccch--h--hHHhhhhhCCCCCCcccHHHHHHHHHh----
Q psy8740 127 VNGTIGKQMVDTLVE-------SAANVELILKYFDMFL-KLKDL--T--SSASFMEIDINNEGWVYPKDFKEKMEQ---- 190 (252)
Q Consensus 127 ~ng~i~~qmvd~lve-------ssgnve~i~kfF~m~~-klk~l--~--~~eAFk~fDkD~dG~IS~~EL~~~L~~---- 190 (252)
.||+....++|-... +.++..+..+-|..|. .+++- . ..--|+.+|-|++|.++..|++-..+.
T Consensus 304 ~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~r 383 (493)
T KOG2562|consen 304 GDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQR 383 (493)
T ss_pred hccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHH
Confidence 466666777776655 1223334445565453 44332 2 368899999999999999999876433
Q ss_pred ---C--CCCC-HHHHHHHHHhhccCCCccccHHHHHHHhcCCcchhhhHHHHHhhhcccCCCCCCC
Q psy8740 191 ---Q--KSYT-PEDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPR 250 (252)
Q Consensus 191 ---~--~~lT-eeEI~~Li~e~D~DgDG~IdyeEFv~~m~~Pa~digf~~~~l~~~l~~~~~~~~r 250 (252)
. ..++ ++-+.+|+..+.+-..++|+..+|... -.|++++-.|-|+..-|-++.|
T Consensus 384 m~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s------kl~~~v~n~l~nl~kfm~~E~R 443 (493)
T KOG2562|consen 384 MECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS------KLAGTVFNILFNLNKFMAHETR 443 (493)
T ss_pred HHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc------cccchhhhhhccHHHHHHHhhh
Confidence 1 2222 444566667777777888999999762 2355666666666555544443
No 81
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=85.24 E-value=1.6 Score=31.15 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=25.1
Q ss_pred ccchhhHHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 159 LKDLTSSASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 159 lk~l~~~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
+.+..+..+|+..|++++|.+..+|+.+..+.
T Consensus 18 ~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 18 MDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp --HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 45556688999999999999999999887654
No 82
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=84.35 E-value=1.3 Score=34.43 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.9
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
..++|+..|.|+||.|+.+||-..|..
T Consensus 49 v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 49 LEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 457889999999999999999988865
No 83
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=84.27 E-value=1.1 Score=34.52 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=23.9
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
..++++.+|.|++|.|+.+||..+|..
T Consensus 55 v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 55 VDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 357889999999999999999998865
No 84
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=83.94 E-value=1.1 Score=28.95 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=23.0
Q ss_pred HHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 199 IEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 199 I~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
+..++..+|.+++|.|+++||...+.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~ 27 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALK 27 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 56778899999999999999998885
No 85
>KOG3555|consensus
Probab=81.92 E-value=1.8 Score=42.11 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=49.1
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
.=+|..+|.|.||.++..||+.+-.-. .+.=|+.++..+|...||.|+-.|++.-|..
T Consensus 253 gWMFnklD~N~Dl~Ld~sEl~~I~ldk---nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 253 GWMFNKLDTNYDLLLDQSELRAIELDK---NEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhccccccccccCHHHhhhhhccC---chhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 468999999999999999998874322 2445788999999999999999999999875
No 86
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=81.91 E-value=1.8 Score=33.20 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=23.7
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
..++|+.+|.|++|.|+.+||-..|..
T Consensus 53 v~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 53 IAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 467899999999999999999888754
No 87
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=81.83 E-value=1.6 Score=30.03 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=23.6
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
..++|+.+|.+++|.|+.+|+..++..
T Consensus 35 ~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 35 LAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred HHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 467899999999999999999888754
No 88
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=81.68 E-value=3.5 Score=34.89 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=54.4
Q ss_pred hhhhhCCCCCCcccHHHHHHHHHhC----CCCCHHHHHHHHHhhccCCCccccHHHHHHHhcCCcchhhh---HHHHHhh
Q psy8740 167 SFMEIDINNEGWVYPKDFKEKMEQQ----KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGF---NLAVLLT 239 (252)
Q Consensus 167 AFk~fDkD~dG~IS~~EL~~~L~~~----~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~Pa~digf---~~~~l~~ 239 (252)
+|..|-+.+...++..-|.++++.+ .++|...++-++..+...+...|+|++|...+..-|..-|= ....+..
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~~~~~~~~ 86 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKSSAEELKE 86 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCTHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444456777899999999999873 46899999999999887777889999999998754444444 5555555
Q ss_pred hc
Q psy8740 240 NL 241 (252)
Q Consensus 240 ~l 241 (252)
.|
T Consensus 87 kl 88 (154)
T PF05517_consen 87 KL 88 (154)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 89
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=79.56 E-value=2.1 Score=32.65 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.7
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
..++|+.+|.|++|.|+.+||...|..
T Consensus 53 v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 53 IDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 357899999999999999999988754
No 90
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=79.30 E-value=2.1 Score=32.42 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.8
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
..++|+.+|+|++|.|+.+||..++..
T Consensus 54 v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 54 VDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 357899999999999999999988765
No 91
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=79.02 E-value=2.2 Score=32.54 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.3
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHhC
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQQ 191 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~~ 191 (252)
...+|+.+|.|++|.|+.+||..+|...
T Consensus 53 i~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 53 VDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3578899999999999999999988763
No 92
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=78.83 E-value=2.1 Score=33.00 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=23.2
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
.++++.+|.|+||.|+.+||-..|..
T Consensus 55 ~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 55 DRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 57889999999999999999888765
No 93
>KOG0751|consensus
Probab=77.83 E-value=14 Score=37.77 Aligned_cols=111 Identities=17% Similarity=0.258 Sum_probs=66.2
Q ss_pred hhhHHHHHHHhhcCccCCcchHHHHHHHhhhcchhHHHHHHHHHHHHhc-cchh--hHHhhhhhCCCCCCcccHHHHHHH
Q psy8740 111 QKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAANVELILKYFDMFLKL-KDLT--SSASFMEIDINNEGWVYPKDFKEK 187 (252)
Q Consensus 111 ~~~~~~~lLSmLegn~~ng~i~~qmvd~lvessgnve~i~kfF~m~~kl-k~l~--~~eAFk~fDkD~dG~IS~~EL~~~ 187 (252)
.++.+-.-|-++.-+.-|-++..-+.. ..+-....-+....|..+..+ +--+ -..||+.||+.++|.+|.+++..+
T Consensus 55 ~edFv~~ylgL~~e~~~n~~~v~Lla~-iaD~tKDglisf~eF~afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~i 133 (694)
T KOG0751|consen 55 PEDFVRRYLGLYNESNFNDKIVRLLAS-IADQTKDGLISFQEFRAFESVLCAPDALFEVAFQLFDRLGNGEVSFEDVADI 133 (694)
T ss_pred HHHHHHHHHhhcccccCChHHHHHHHh-hhhhcccccccHHHHHHHHhhccCchHHHHHHHHHhcccCCCceehHHHHHH
Confidence 555666667777666656665543322 222211112223445545433 2222 268999999999999999999999
Q ss_pred HHhC---C----CCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 188 MEQQ---K----SYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 188 L~~~---~----~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
.... . +...+-|.. .+..+.--.++|.||..++|.
T Consensus 134 f~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~lh~ 175 (694)
T KOG0751|consen 134 FGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFLHE 175 (694)
T ss_pred HhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHHHH
Confidence 9762 1 223333443 334444456899999988873
No 94
>KOG0169|consensus
Probab=76.85 E-value=4.4 Score=42.68 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=52.3
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
...|+..|++++|.++.++...+++.. -.+...-+..++++++..++|++..++|++....
T Consensus 139 ~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 139 HSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred HHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHh
Confidence 468899999999999999999988875 5678888888899999999999999999887764
No 95
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=75.99 E-value=2.4 Score=35.16 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 193 SYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 193 ~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
.+|+++.+.+-.++-.|..|.+.|.||+..|.
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 47999999999999999999999999999997
No 96
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=75.76 E-value=3.5 Score=31.48 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.0
Q ss_pred HHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 198 DIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 198 EI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
++...+..+|.|++|.|+++|+...|.
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~ 37 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILL 37 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHH
Confidence 446677889999999999999998885
No 97
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=73.63 E-value=22 Score=28.54 Aligned_cols=107 Identities=20% Similarity=0.290 Sum_probs=54.2
Q ss_pred CcccchhHHhhhhhhhhhhhcHHHHHHHHHhhhhcccchHHHHHHHH----hhhhhHHHHHHHhhcCccCCcchHHHHHH
Q psy8740 62 GPCTQNQQALAHSRLWDAVGGFLFLFSHMQDKLSKHSSQVDLLKILL----NLQKDMITMMLSMLEGNVVNGTIGKQMVD 137 (252)
Q Consensus 62 gpc~~nq~~l~~~~~~d~~~g~~~~~~~~~~kLs~~~~ql~llke~~----~l~~~~~~~lLSmLegn~~ng~i~~qmvd 137 (252)
.||+....+=...||.|. |..+.......-.....-.+...+.. ...+..+.+.-.-|-+| .||.+.+.=+.
T Consensus 2 ~~C~~~e~~~F~~RL~dW---f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~F~~LD~n-~d~~L~~~El~ 77 (113)
T PF10591_consen 2 TPCTEQELSQFPRRLLDW---FKNLMEQSKSRDELSDHYIELLKRDESSSYSECKRVVHWKFCQLDRN-KDGVLDRSELK 77 (113)
T ss_dssp ----HHHHHHHHHHHHHH---HHHHHHHHHHHTSCCSS-HHHHHHHHHHTGGGGHHHHHHHHHHH--T--SSEE-TTTTG
T ss_pred CCCCHHHHHHHHHHHHHH---HHHHHHHHhcccccccccccccccccccchhhhhhhhhhhHhhhcCC-CCCccCHHHHH
Confidence 378888888888888654 23233333222111101123333322 22566688999999999 48887765444
Q ss_pred HhhhcchhHHHHHHHHHHHHhccchhhHHhhhhhCCCCCCcccHHHHHH
Q psy8740 138 TLVESAANVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVYPKDFKE 186 (252)
Q Consensus 138 ~lvessgnve~i~kfF~m~~klk~l~~~eAFk~fDkD~dG~IS~~EL~~ 186 (252)
++... +.--+-..+.-|+..|.|+||.||..|...
T Consensus 78 ~l~~~--------------l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 78 PLRRP--------------LMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGST--------------TSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HHHHH--------------HhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 33221 000011235678889999999999999754
No 98
>KOG3866|consensus
Probab=72.74 E-value=3.7 Score=39.61 Aligned_cols=59 Identities=19% Similarity=0.353 Sum_probs=45.4
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHh-C-C--CCC--HHHH-----------HHHHHhhccCCCccccHHHHHHHh
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQ-Q-K--SYT--PEDI-----------EFMLACCETNHDGKIDYVGFTDRF 223 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~-~-~--~lT--eeEI-----------~~Li~e~D~DgDG~IdyeEFv~~m 223 (252)
+-.|...|.|+||+.+..||...++. + + ..+ ++++ +.+|+.+|+|.|-.|+.+||++.-
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 57899999999999999999988765 2 1 222 1222 345678999999999999999764
No 99
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=72.23 E-value=4.4 Score=30.12 Aligned_cols=29 Identities=7% Similarity=0.050 Sum_probs=24.6
Q ss_pred HHHHHHHHhhcc--CCCccccHHHHHHHhcC
Q psy8740 197 EDIEFMLACCET--NHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 197 eEI~~Li~e~D~--DgDG~IdyeEFv~~m~~ 225 (252)
+++...+..+|. |++|.|+++||..++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 456677889999 89999999999998853
No 100
>KOG0377|consensus
Probab=70.30 E-value=17 Score=36.83 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=48.4
Q ss_pred hhHHhhhhhCCCCCCcccHHHHHHHHHhC--CCCCHHHHHHHHHhhccCCCccccHHHHHHHhc--CCcchhh
Q psy8740 163 TSSASFMEIDINNEGWVYPKDFKEKMEQQ--KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH--EPAKEIG 231 (252)
Q Consensus 163 ~~~eAFk~fDkD~dG~IS~~EL~~~L~~~--~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~--~Pa~dig 231 (252)
++...|+.+|.+++|+||...-..+|++. -+++-.-+.- +-+..+.||.+.|.+-.+.+. .|-.++|
T Consensus 465 dL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~--kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~ 535 (631)
T KOG0377|consen 465 DLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRP--KLANGSDDGKVEYKSTLDNLDTEVILEEAG 535 (631)
T ss_pred HHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhh--hccCCCcCcceehHhHHHHhhhhhHHHHHH
Confidence 34689999999999999999999999983 3555332221 346677888999988877654 3444444
No 101
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=66.78 E-value=6.6 Score=30.12 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=23.2
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
..+.++.+|+|++|.|+.+||..++..
T Consensus 53 v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 53 VDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 357888999999999999999888754
No 102
>KOG4578|consensus
Probab=64.13 E-value=5.9 Score=38.46 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=43.4
Q ss_pred hhhhhCCCCCCcccHHHHH---HHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 167 SFMEIDINNEGWVYPKDFK---EKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 167 AFk~fDkD~dG~IS~~EL~---~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
-|..+|+|.++.|...|.+ .++..-.++ ..=...+++-+|.|+|.+|++.|+..-+.
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~-rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKP-RKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccH-HHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 5889999999999998864 444432222 22346788899999999999999988775
No 103
>KOG0041|consensus
Probab=63.77 E-value=6.4 Score=35.89 Aligned_cols=34 Identities=24% Similarity=0.465 Sum_probs=29.2
Q ss_pred HHHHHHhhccCCCccccHHHHHHHhc---CCcchhhh
Q psy8740 199 IEFMLACCETNHDGKIDYVGFTDRFH---EPAKEIGF 232 (252)
Q Consensus 199 I~~Li~e~D~DgDG~IdyeEFv~~m~---~Pa~digf 232 (252)
...|++.+|.|-||.||+.|...+|. .|-+++|-
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~l 137 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGL 137 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHH
Confidence 35678889999999999999988886 69999983
No 104
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=62.11 E-value=19 Score=28.39 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=23.4
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
..++|+..|.|+||.|+..|+-..+..
T Consensus 50 vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 50 VDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 468999999999999999999877644
No 105
>KOG0751|consensus
Probab=61.70 E-value=15 Score=37.58 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=42.5
Q ss_pred ccchhhHHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHh-hccCCCccccHHHHH
Q psy8740 159 LKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLAC-CETNHDGKIDYVGFT 220 (252)
Q Consensus 159 lk~l~~~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e-~D~DgDG~IdyeEFv 220 (252)
.......+||+..|+.++|.||.=+++.+|.+. ..+..+.++..+.. +..+....++|..|.
T Consensus 176 ~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 176 FQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHH
Confidence 333445899999999999999999999999884 45555566655544 433333345555543
No 106
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=60.27 E-value=14 Score=28.27 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=39.0
Q ss_pred CCcccHHHHHHHHHh---CCCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 176 EGWVYPKDFKEKMEQ---QKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 176 dG~IS~~EL~~~L~~---~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
||.++..|...+-+- ...+++++...+++.+........++.+|++.+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 689999887665443 34678888999998888777777889999888764
No 107
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=59.23 E-value=10 Score=30.30 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=25.6
Q ss_pred ccchhhHHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 159 LKDLTSSASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 159 lk~l~~~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
|....+..++..-|.|++|+++.+||.-+|+-
T Consensus 40 L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 40 LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 44445678999999999999999999998853
No 108
>KOG0998|consensus
Probab=57.09 E-value=4 Score=43.59 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=52.8
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
.++|...|++++|+|+..+.+..+.. ..++.+.+......+|.++.|.+++++|+-.|+.
T Consensus 286 ~~if~q~d~~~dG~I~s~~~~~~f~~-~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 286 SKIFSQVDKDNDGSISSNEARNIFLP-FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHhccccCCCccccccccccccc-CCCChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 46899999999999999999988766 4577788899999999999999999999887764
No 109
>KOG2871|consensus
Probab=57.03 E-value=8 Score=38.09 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=46.5
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhCC-CCCHHHHHHHHH-hhccCCCccccHHHHHHHh
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQK-SYTPEDIEFMLA-CCETNHDGKIDYVGFTDRF 223 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~~-~lTeeEI~~Li~-e~D~DgDG~IdyeEFv~~m 223 (252)
+++|+.+|+.++|+||..-++.+|.... .+++.+.-.+++ -.|..+-|.|-.++|..-+
T Consensus 312 rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 312 RRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred HhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 7999999999999999999999999864 566655544454 5788888888777776543
No 110
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=53.48 E-value=10 Score=32.04 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=28.4
Q ss_pred CCcccHHHHHHHHHhCCCCCHHHHHHHHHhhcc-------CCCccccHHHHHHHhc
Q psy8740 176 EGWVYPKDFKEKMEQQKSYTPEDIEFMLACCET-------NHDGKIDYVGFTDRFH 224 (252)
Q Consensus 176 dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~-------DgDG~IdyeEFv~~m~ 224 (252)
-+.||+.||.+.-+-. .++...+.++++++.. +..+.|||+.|..+|.
T Consensus 5 ~~~lsp~eF~qLq~y~-eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~ 59 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYS-EYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMK 59 (138)
T ss_dssp -S-S-HHHHHHHHHHH-HH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHH
T ss_pred eeccCHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHH
Confidence 3789999987764321 3455678889988743 3466899999988774
No 111
>KOG0040|consensus
Probab=49.69 E-value=1.2e+02 Score=35.37 Aligned_cols=115 Identities=20% Similarity=0.349 Sum_probs=68.1
Q ss_pred chHHHHHHHHhh---------hhhHHHHHHHhhcCcc---CCcc---hHHHHHHHhhhcc--hhHHHHHHHHHHHHhccc
Q psy8740 99 SQVDLLKILLNL---------QKDMITMMLSMLEGNV---VNGT---IGKQMVDTLVESA--ANVELILKYFDMFLKLKD 161 (252)
Q Consensus 99 ~ql~llke~~~l---------~~~~~~~lLSmLegn~---~ng~---i~~qmvd~lvess--gnve~i~kfF~m~~klk~ 161 (252)
+||..|+=.|+- .....-.-|+.||.+. .+|. --+.++| +|+++ |.|.. .-+..|..-++
T Consensus 2250 e~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld-~vDP~r~G~Vsl--~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2250 EQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILD-LVDPNRDGYVSL--QDYMAFMISKE 2326 (2399)
T ss_pred HHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHH-hcCCCCcCcccH--HHHHHHHHhcc
Confidence 455555544443 3344666788888776 3332 2234444 45544 44444 33333322222
Q ss_pred h-------hhHHhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhh----cc----CCCccccHHHHHHHh
Q psy8740 162 L-------TSSASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACC----ET----NHDGKIDYVGFTDRF 223 (252)
Q Consensus 162 l-------~~~eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~----D~----DgDG~IdyeEFv~~m 223 (252)
. .-..||+.+|. +..||+..++... +|+++.+.+++.+ |+ ..-+.++|.+|++.+
T Consensus 2327 TeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2327 TENILSSEEIEDAFRALDA-GKPYVTKEELYQN------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred cccccchHHHHHHHHHhhc-CCccccHHHHHhc------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 1 12689999999 8889999887654 6778888887754 33 123458999998765
No 112
>KOG0035|consensus
Probab=49.60 E-value=25 Score=37.98 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=50.7
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhC-CCCC-----HHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQ-KSYT-----PEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lT-----eeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
+..|+.+|+...|..+..++..++-.+ .+.- ..|+-.++...|.++-|.+.|.+|...|.+
T Consensus 750 rAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 750 RALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 688999999999999999999988774 3333 355667778888888899999999998875
No 113
>KOG3555|consensus
Probab=45.66 E-value=30 Score=33.95 Aligned_cols=76 Identities=13% Similarity=0.157 Sum_probs=55.6
Q ss_pred hhhHHHHHHHhhcCccCCcchHHHHHHHhhhcchhHHHHHHHHHHHHhccchhhHHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 111 QKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAANVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 111 ~~~~~~~lLSmLegn~~ng~i~~qmvd~lvessgnve~i~kfF~m~~klk~l~~~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
=++.++||.+-|-+|- +|-+..+=+..+.. .+|-.+| +..|...|...||.|+..|-...+..
T Consensus 248 CKds~gWMFnklD~N~-Dl~Ld~sEl~~I~l-dknE~Ci---------------kpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNY-DLLLDQSELRAIEL-DKNEACI---------------KPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhhcccccc-ccccCHHHhhhhhc-cCchhHH---------------HHHHhhhcccccCccccchhhhhhcc
Confidence 5678999999999999 77776665553333 4555555 45677889999999999999999877
Q ss_pred CCCCCHHHHHHHH
Q psy8740 191 QKSYTPEDIEFML 203 (252)
Q Consensus 191 ~~~lTeeEI~~Li 203 (252)
...+-..|+..+-
T Consensus 311 ~~~pc~~e~~riq 323 (434)
T KOG3555|consen 311 SDPPCQAELCRIQ 323 (434)
T ss_pred CCCccccHHHHHH
Confidence 5555555555543
No 114
>PF14658 EF-hand_9: EF-hand domain
Probab=44.13 E-value=29 Score=25.90 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.1
Q ss_pred HHhhhhhCCCCC-CcccHHHHHHHHHh
Q psy8740 165 SASFMEIDINNE-GWVYPKDFKEKMEQ 190 (252)
Q Consensus 165 ~eAFk~fDkD~d-G~IS~~EL~~~L~~ 190 (252)
+..-+.+|+++. |.|+.++|..+|+.
T Consensus 38 q~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 38 QDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 345578999999 99999999999974
No 115
>PF07097 DUF1359: Protein of unknown function (DUF1359); InterPro: IPR010772 This family consists of several hypothetical bacterial and phage proteins of around 100 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this species. The function of this family is unknown.
Probab=42.35 E-value=17 Score=28.89 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=18.9
Q ss_pred HHHHHHhhcCcc-CCcchHHHHHHHh
Q psy8740 115 ITMMLSMLEGNV-VNGTIGKQMVDTL 139 (252)
Q Consensus 115 ~~~lLSmLegn~-~ng~i~~qmvd~l 139 (252)
|+||+|+|+.|+ .|-++...++..+
T Consensus 72 VGTLI~LL~~NIE~NT~l~~EL~~~L 97 (102)
T PF07097_consen 72 VGTLIPLLEQNIEDNTTLISELAKEL 97 (102)
T ss_pred hhhhhHHHHhccccchHHHHHHHHHh
Confidence 899999999999 4446666666543
No 116
>KOG4666|consensus
Probab=42.06 E-value=47 Score=32.49 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=50.3
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHhC-C-CCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQQ-K-SYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~~-~-~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
++..|..||.+++|.++..|--..+.-. . .-|++-|+--++.++.+.||.+.=.+|.-+++
T Consensus 261 l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq 323 (412)
T KOG4666|consen 261 LAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQ 323 (412)
T ss_pred hhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHH
Confidence 3689999999999999988877766653 3 56788888889999999999999888876654
No 117
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.30 E-value=45 Score=28.69 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=44.1
Q ss_pred HhhhhhCCCCCCcccHHHHHH---HHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHHhc
Q psy8740 166 ASFMEIDINNEGWVYPKDFKE---KMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 166 eAFk~fDkD~dG~IS~~EL~~---~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
-+|.+.+.| |.++..|-.+ +++....++.++++.++.....-+...|||-.|...+.
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 467776554 7888887543 44444678999999999999888888999999987765
No 118
>KOG4347|consensus
Probab=38.63 E-value=29 Score=36.28 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=43.6
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCccccHHHH
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~~-~~lTeeEI~~Li~e~D~DgDG~IdyeEF 219 (252)
....|+.+|..++|.||.++|-..+... ..--.+.+..+.+..|.+++ ..+-+|=
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 3699999999999999999999998774 22334567888899999888 7666553
No 119
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=37.66 E-value=43 Score=23.83 Aligned_cols=30 Identities=23% Similarity=0.492 Sum_probs=12.3
Q ss_pred CccccHHHHHHHhc-----CCcchhhh-HHHHHhhh
Q psy8740 211 DGKIDYVGFTDRFH-----EPAKEIGF-NLAVLLTN 240 (252)
Q Consensus 211 DG~IdyeEFv~~m~-----~Pa~digf-~~~~l~~~ 240 (252)
+|.+...++-..+. -+.+++|| ++..||.+
T Consensus 21 ~g~v~ls~l~~~~~~~~~~f~~~~yG~~~l~~ll~~ 56 (74)
T PF12872_consen 21 DGWVSLSQLGQEYKKKYPDFDPRDYGFSSLSELLES 56 (74)
T ss_dssp TSSEEHHHHHHHHHHHHTT--TCCTTSSSHHHHHHT
T ss_pred CceEEHHHHHHHHHHHCCCCCccccCCCcHHHHHHh
Confidence 33455444444332 23444455 44444433
No 120
>PLN02952 phosphoinositide phospholipase C
Probab=37.01 E-value=1.3e+02 Score=31.33 Aligned_cols=62 Identities=8% Similarity=0.085 Sum_probs=45.1
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHh-CC--CCCHHHHHHHHHhhc-------cCCCccccHHHHHHHhcCC
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQ-QK--SYTPEDIEFMLACCE-------TNHDGKIDYVGFTDRFHEP 226 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~-~~--~lTeeEI~~Li~e~D-------~DgDG~IdyeEFv~~m~~P 226 (252)
..++|..|-.++ +.+|.++|...|+. ++ ..+.+++..++..+- ..+.+.+++++|...+..+
T Consensus 40 i~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 40 VKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred HHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcCc
Confidence 368898885544 78999999999987 43 467788888866431 1233458999999988754
No 121
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=36.62 E-value=49 Score=28.95 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCCCCCcccHHHHHHHHHh-CCCCCHHHHHHHHHhhc
Q psy8740 172 DINNEGWVYPKDFKEKMEQ-QKSYTPEDIEFMLACCE 207 (252)
Q Consensus 172 DkD~dG~IS~~EL~~~L~~-~~~lTeeEI~~Li~e~D 207 (252)
..|.+||++.+||-+.+.. ...+|.++|.+++...|
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 5678899999999988877 45689999999987643
No 122
>PLN02222 phosphoinositide phospholipase C 2
Probab=36.62 E-value=80 Score=32.69 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=46.7
Q ss_pred hHHhhhhhCCCCCCcccHHHHHHHHHh-CC--CCCHHHHHHHHHhhcc-CCCccccHHHHHHHhcCC
Q psy8740 164 SSASFMEIDINNEGWVYPKDFKEKMEQ-QK--SYTPEDIEFMLACCET-NHDGKIDYVGFTDRFHEP 226 (252)
Q Consensus 164 ~~eAFk~fDkD~dG~IS~~EL~~~L~~-~~--~lTeeEI~~Li~e~D~-DgDG~IdyeEFv~~m~~P 226 (252)
..++|..|-. ++.+|.++|...|+. ++ ..+.+.+..++..... -..+.++++.|...+..+
T Consensus 27 i~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 27 IKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 3678888853 479999999999987 43 4578888889887532 245679999999998764
No 123
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=36.25 E-value=56 Score=28.65 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=28.9
Q ss_pred CCCCCCcccHHHHHHHHHh-CCCCCHHHHHHHHHhhc
Q psy8740 172 DINNEGWVYPKDFKEKMEQ-QKSYTPEDIEFMLACCE 207 (252)
Q Consensus 172 DkD~dG~IS~~EL~~~L~~-~~~lTeeEI~~Li~e~D 207 (252)
-.|.+||+..++|-+.++. ...+|.++|.+++..-|
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 4578899999999999876 45689999998876433
No 124
>KOG1707|consensus
Probab=33.69 E-value=36 Score=35.33 Aligned_cols=51 Identities=24% Similarity=0.419 Sum_probs=38.0
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhC--CCCC---HHHHHHHHHhhccCCCccccHHHHHH
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQ--KSYT---PEDIEFMLACCETNHDGKIDYVGFTD 221 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~--~~lT---eeEI~~Li~e~D~DgDG~IdyeEFv~ 221 (252)
...|..||.|+||..+..||+.+.... .+.+ .++. .-.+..|.+.|..|+.
T Consensus 318 ~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~------t~~~~~G~ltl~g~l~ 373 (625)
T KOG1707|consen 318 VDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS------TVKNERGWLTLNGFLS 373 (625)
T ss_pred HHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc------ceecccceeehhhHHH
Confidence 589999999999999999999999873 2211 2221 1223689999999985
No 125
>KOG1029|consensus
Probab=32.36 E-value=1.1e+02 Score=33.11 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=38.6
Q ss_pred CCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHHh
Q psy8740 174 NNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRF 223 (252)
Q Consensus 174 D~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m 223 (252)
-+.|+||.+.-+.++-.. .+...=+.++..-.|.|+||++|..||--.|
T Consensus 27 p~~gfitg~qArnfflqS-~LP~~VLaqIWALsDldkDGrmdi~EfSIAm 75 (1118)
T KOG1029|consen 27 PGQGFITGDQARNFFLQS-GLPTPVLAQIWALSDLDKDGRMDIREFSIAM 75 (1118)
T ss_pred CCCCccchHhhhhhHHhc-CCChHHHHHHHHhhhcCccccchHHHHHHHH
Confidence 466999999988776432 3555667888889999999999999996544
No 126
>COG1158 Rho Transcription termination factor [Transcription]
Probab=30.76 E-value=39 Score=33.29 Aligned_cols=63 Identities=19% Similarity=0.399 Sum_probs=44.4
Q ss_pred cchhhHHhhhhhCCCCCCc------ccHHHHHHHH--Hh-CCCCCH-HHHHHHHHhhccCCCccccHHHHHHHhcCC
Q psy8740 160 KDLTSSASFMEIDINNEGW------VYPKDFKEKM--EQ-QKSYTP-EDIEFMLACCETNHDGKIDYVGFTDRFHEP 226 (252)
Q Consensus 160 k~l~~~eAFk~fDkD~dG~------IS~~EL~~~L--~~-~~~lTe-eEI~~Li~e~D~DgDG~IdyeEFv~~m~~P 226 (252)
+.++.++.|=++|..++|+ ++.++|+++. ++ ...+.+ +-++.+++....-.+. +||+..|...
T Consensus 349 R~laerRifPAIdi~kSGTRKEeLLl~~~~l~k~w~lRr~l~~md~~~a~e~li~klk~Tk~N----~eF~~~m~~~ 421 (422)
T COG1158 349 RKLAERRIFPAIDINKSGTRKEELLLSPDELQKMWVLRRILSPMDEIDAIEFLIDKLKKTKTN----DEFLEQMNKS 421 (422)
T ss_pred hhhhhcccccceecccCCcchHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccccH----HHHHHHhhcC
Confidence 3556789999999999996 7788888864 55 345554 5566777766544332 7899888653
No 127
>COG1309 AcrR Transcriptional regulator [Transcription]
Probab=30.11 E-value=9.9 Score=29.28 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=19.0
Q ss_pred CCCCCccceeccccccccccccCcc
Q psy8740 8 LTEPNISTTVNESIMDFYWHYSSKE 32 (252)
Q Consensus 8 ~~~~~~~~~l~~~~~~~yw~~~~~~ 32 (252)
+|-..|.-++.=|-+-|||||.+|+
T Consensus 33 ~t~~~Ia~~agvs~~~~Y~~f~~K~ 57 (201)
T COG1309 33 TTVDEIAKAAGVSKGTLYRHFPSKE 57 (201)
T ss_pred CCHHHHHHHhCCCcchhHHHcCCHH
Confidence 4444566667778889999999986
No 128
>KOG1707|consensus
Probab=28.64 E-value=82 Score=32.86 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=33.4
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhC--CCCCHHHHHHHHHh
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQ--KSYTPEDIEFMLAC 205 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~--~~lTeeEI~~Li~e 205 (252)
.++|+.-|.|+||.++-.||...-+.+ .++...+++.+...
T Consensus 198 ~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~v 240 (625)
T KOG1707|consen 198 KRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNV 240 (625)
T ss_pred HHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHH
Confidence 689999999999999999999887774 46777666666543
No 129
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=28.37 E-value=2.7e+02 Score=23.80 Aligned_cols=77 Identities=9% Similarity=0.149 Sum_probs=50.8
Q ss_pred hhhHHHHHHHhhcCccCCcchHHHHHHHhhhcchhHHHHHHHHHHHHhccchhhHHhhhhhCCCCCCcccHHHHHHHHH
Q psy8740 111 QKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAANVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKME 189 (252)
Q Consensus 111 ~~~~~~~lLSmLegn~~ng~i~~qmvd~lvessgnve~i~kfF~m~~klk~l~~~eAFk~fDkD~dG~IS~~EL~~~L~ 189 (252)
...|+-.+-.+--+|+.-.....++-..+....++.+-.-.+...+.++.+++ +--...|+.+-||+|..||+.+.-
T Consensus 20 g~~L~~~a~~lwP~~~~~~~~s~~Wqq~l~~~a~~~~~l~gW~q~~~~Lq~L~--~rL~~le~~rg~Y~TiSeLKT~vy 96 (148)
T PF12486_consen 20 GEQLVRQAQQLWPDNPQQQQLSQQWQQQLEARALPAPQLDGWHQGMTQLQQLA--DRLNQLEEQRGKYMTISELKTAVY 96 (148)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHhCCCchhhchHHHHHHHHHHHH--HHHHHHHHhcCCceeHHHHHHHHH
Confidence 44455566666666655557777777777776666665444444555665554 334557888889999999999853
No 130
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=27.92 E-value=44 Score=24.96 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=20.8
Q ss_pred hhhCCCCCCcccHHHHHHHHHhC
Q psy8740 169 MEIDINNEGWVYPKDFKEKMEQQ 191 (252)
Q Consensus 169 k~fDkD~dG~IS~~EL~~~L~~~ 191 (252)
+.||+..+.+||.+++++..+.+
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g 32 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREG 32 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCC
Confidence 57899999999999999998875
No 131
>KOG0038|consensus
Probab=26.17 E-value=1.1e+02 Score=26.92 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=43.3
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHH--HHHHHhhccCCCccccHHHHHHHhc
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDI--EFMLACCETNHDGKIDYVGFTDRFH 224 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI--~~Li~e~D~DgDG~IdyeEFv~~m~ 224 (252)
+++=.+|-.||+|-+|.++|-.++.-...+.+.++ ..-++-.|-|+|+.|.-++....++
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~ 135 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLT 135 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHH
Confidence 34556677899999999999888766433333333 4455678999999998888766654
No 132
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=25.97 E-value=45 Score=24.65 Aligned_cols=46 Identities=28% Similarity=0.439 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHhhccCCCccccHHHHHHHhcCCcchhhhHHHHHhhhcccCC
Q psy8740 194 YTPEDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHM 245 (252)
Q Consensus 194 lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~Pa~digf~~~~l~~~l~~~~ 245 (252)
+++++++++++.+-.. +|.+-...+.+=-.+ ||....++++|.+.+
T Consensus 3 p~~~~i~~i~~~~~~~-----~~~~~~~~~~~l~~~-G~s~~~Il~~l~~~l 48 (89)
T PF08542_consen 3 PPPEVIEEILESCLNG-----DFKEARKKLYELLVE-GYSASDILKQLHEVL 48 (89)
T ss_dssp --HHHHHHHHHHHHHT-----CHHHHHHHHHHHHHT-T--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 4556666666655433 555555555544444 777777777776543
No 133
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=25.97 E-value=73 Score=23.95 Aligned_cols=34 Identities=15% Similarity=0.386 Sum_probs=21.9
Q ss_pred CCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCC
Q psy8740 176 EGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNH 210 (252)
Q Consensus 176 dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~Dg 210 (252)
.|+||.+|+..+|.. ..++.+.|+.++..+...|
T Consensus 19 ~G~lT~~eI~~~L~~-~~~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 19 KGYLTYDEINDALPE-DDLDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp HSS-BHHHHHHH-S--S---HHHHHHHHHHHHTT-
T ss_pred cCcCCHHHHHHHcCc-cCCCHHHHHHHHHHHHHCC
Confidence 499999999999863 2478888999988765544
No 134
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=25.09 E-value=2e+02 Score=28.95 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=42.2
Q ss_pred CCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHHhcCCcchh
Q psy8740 176 EGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEI 230 (252)
Q Consensus 176 dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~Pa~di 230 (252)
.-+|+.+++...|....+.+.+++..+++.+-. .+.++.+|++.+++.++.+.
T Consensus 10 ~~~i~~~~i~~~l~~~~~~~~~~v~~il~Kal~--~~~Ls~eEal~LL~~~~~~~ 62 (469)
T PRK09613 10 ADFIDDEEIEELLEKAKNPDKDEIREILEKAKE--KKGLSPEEAAVLLNVEDPEL 62 (469)
T ss_pred hhhcCHHHHHHHHHhccCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHcCCChhH
Confidence 368999999999988777788889998887653 34599999999998765544
No 135
>PLN02751 glutamyl-tRNA(Gln) amidotransferase
Probab=24.89 E-value=7.8e+02 Score=25.42 Aligned_cols=135 Identities=14% Similarity=0.297 Sum_probs=69.6
Q ss_pred CCccceeccccccccccccCccccChhhhhhhHHHHHH-----HHhhhhhhhhhhcCcccchhHHhhhhh----hhhhhh
Q psy8740 11 PNISTTVNESIMDFYWHYSSKELIDPAGKANFFKAIGV-----ASQVFNTLSEVIQGPCTQNQQALAHSR----LWDAVG 81 (252)
Q Consensus 11 ~~~~~~l~~~~~~~yw~~~~~~~i~~~g~~~~~~~~~~-----~~q~f~tlte~iqgpc~~nq~~l~~~~----~~d~~~ 81 (252)
-.+++|--|...| |.||-.=|+--..=...+...+.. =-+....+.|| |=....=..|..++ +++++.
T Consensus 324 ~Tv~mR~KE~a~D-YRyfPEPDLppi~i~~e~i~~ir~~lPElP~~~~~Rl~~~--gLs~~dA~~L~~~~~~a~ffe~~~ 400 (544)
T PLN02751 324 KTVTMRKKEGLAD-YRYFPEPDLPEVVLTEEYVDSIRASMPELPEAKRRRYENM--GLSMQDVLFLANDKNVAEFFDATL 400 (544)
T ss_pred eEeecccccchhh-cCcCCCCCCCceecCHHHHHHHHHhCCCCHHHHHHHHHHc--CCCHHHHHHHHcCcHHHHHHHHHH
Confidence 3578899999989 899988776443211223333320 01112222344 53333334444433 223221
Q ss_pred cH----HH----HHHHHHhhhhcccchHHHHHHHHhhhhhHHHHHHHhhcCccCCcchHHHHHHHhhhcchhHHHHHHH
Q psy8740 82 GF----LF----LFSHMQDKLSKHSSQVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAANVELILKY 152 (252)
Q Consensus 82 g~----~~----~~~~~~~kLs~~~~ql~llke~~~l~~~~~~~lLSmLegn~~ng~i~~qmvd~lvessgnve~i~kf 152 (252)
.. .- +..++.-.|.+..-.++ .+.+..+.+.-|+.++.....+|.+++.++..+.++.+..+-+.+.
T Consensus 401 ~~~~~~k~~anwi~~el~~~l~~~~~~i~----~~~l~p~~laeLi~li~~g~Is~~~AK~vl~~~~~~~~~p~~iiee 475 (544)
T PLN02751 401 AKGADAKLAANWIMGDIAAYLKNEKVSIS----EIKLTPKELAELIASIKDGTISGKIGKEILPELLAKGGTVKGLVEE 475 (544)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhCCCChh----hcCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 10 00 11112222222111111 1234666788889999877779999999999888766665554443
No 136
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=24.74 E-value=86 Score=18.36 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=7.8
Q ss_pred CCCCCCcccHHHHH
Q psy8740 172 DINNEGWVYPKDFK 185 (252)
Q Consensus 172 DkD~dG~IS~~EL~ 185 (252)
|-|+||.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 45666666665554
No 137
>PLN02230 phosphoinositide phospholipase C 4
Probab=24.43 E-value=2.3e+02 Score=29.61 Aligned_cols=61 Identities=10% Similarity=0.111 Sum_probs=45.4
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHh-C-C--CCCHHHHHHHHHhhc-------cCCCccccHHHHHHHhcCC
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQ-Q-K--SYTPEDIEFMLACCE-------TNHDGKIDYVGFTDRFHEP 226 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~-~-~--~lTeeEI~~Li~e~D-------~DgDG~IdyeEFv~~m~~P 226 (252)
+++|..|-.++ +++|.++|.+.|+. + . ..+.+++..++..+- .-+.+.++.+.|...+..+
T Consensus 32 ~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 32 RDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred HHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 68899885444 89999999999987 4 2 347788888886542 1234569999999987764
No 138
>PLN02228 Phosphoinositide phospholipase C
Probab=24.32 E-value=2.4e+02 Score=29.19 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=45.0
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHh-CC--CCCHHHHHHHHHhhccC----CCccccHHHHHHHhcCC
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQ-QK--SYTPEDIEFMLACCETN----HDGKIDYVGFTDRFHEP 226 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~-~~--~lTeeEI~~Li~e~D~D----gDG~IdyeEFv~~m~~P 226 (252)
.++|..|-. ++.+|.++|.+.|+. ++ ..+.+.+..++..+... ..|.++.+.|...+..+
T Consensus 27 ~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 27 KRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred HHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 466776653 368999999999987 33 35677788999877543 34679999999988765
No 139
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=24.30 E-value=43 Score=26.60 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=34.3
Q ss_pred CCCcccHHHHHHHHHh---CCCCCHHHHHHHHHhhccCCCccccHHHHHHHhcC
Q psy8740 175 NEGWVYPKDFKEKMEQ---QKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225 (252)
Q Consensus 175 ~dG~IS~~EL~~~L~~---~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~m~~ 225 (252)
-||.|+.+|...+..- ...+++.+...++..++.-....+++.+|+..+..
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 89 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRD 89 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3688888887766443 33566777778877777666667888888877765
No 140
>PF06600 DUF1140: Protein of unknown function (DUF1140); InterPro: IPR009520 This entry is represented by Bacteriophage bIL286, Orf36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short, hypothetical phage and bacterial proteins. The function of this family is unknown.
Probab=23.62 E-value=1.2e+02 Score=24.74 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=27.5
Q ss_pred HhhhhhhhhhhhcHHHHHHHHHhhhhcccchHHHHHHHHh
Q psy8740 70 ALAHSRLWDAVGGFLFLFSHMQDKLSKHSSQVDLLKILLN 109 (252)
Q Consensus 70 ~l~~~~~~d~~~g~~~~~~~~~~kLs~~~~ql~llke~~~ 109 (252)
....|+-|-+|++..+-+.++..+|++ |..+-.+++
T Consensus 45 ~vrTs~yWKs~~n~efyi~E~~~~l~~----l~e~Dr~~~ 80 (107)
T PF06600_consen 45 CVRTSAYWKSVGNAEFYIKEIYQKLSQ----LAEIDRLFH 80 (107)
T ss_pred ccchhHHHHHhhcHHHHHHHHHHHHHH----HHHHHHHhh
Confidence 345799999999999999999999877 444444443
No 141
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=23.07 E-value=5.2e+02 Score=24.16 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHHHHhccchhhHHhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHH
Q psy8740 143 AANVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDR 222 (252)
Q Consensus 143 sgnve~i~kfF~m~~klk~l~~~eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~ 222 (252)
+.|+.+.++.| ++......++...+|. ..++.+.+..++... +|++|+..+ +.+..+....=.-|.|+-.
T Consensus 81 ~~ni~I~L~~~----~~~~~~l~~ai~~~d~---~~l~~e~l~~L~~~~--Pt~eE~~~l-~~~~~~~~~L~~~E~f~~~ 150 (370)
T PF02181_consen 81 SQNIGIVLKKF----KLSPEELIQAILNLDE---EVLTEELLENLLKIL--PTPEEIEAL-KAYKGDPATLGPAEQFLLE 150 (370)
T ss_dssp HHHHHHHHHHH----TS-HHHHHHHHHTTTT---CCCTHHHHHHHHHHC--GGHHHHHHH-HCTCTSGTTB-HHHHHHHH
T ss_pred HHHHHHHhhcc----CCCHHHHHHHHHccCc---cccchHHHHHHHhcC--CCchHHHHH-HHHhccHHhhccHHHHHHH
Confidence 46777766655 3433444677777776 567777777766443 678888777 6666665555556778776
Q ss_pred hcCCcchhhhHHHH
Q psy8740 223 FHEPAKEIGFNLAV 236 (252)
Q Consensus 223 m~~Pa~digf~~~~ 236 (252)
+.. .+.+--++..
T Consensus 151 l~~-ip~~~~rl~~ 163 (370)
T PF02181_consen 151 LSK-IPRLKERLEA 163 (370)
T ss_dssp HTT-STTHHHHHHH
T ss_pred HHH-HHHHHHHHHH
Confidence 665 4444434333
No 142
>PF09674 DUF2400: Protein of unknown function (DUF2400); InterPro: IPR014127 Members of this uncharacterised protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides. The function is unknown and its gene neighbourhoods show little conservation.
Probab=23.00 E-value=66 Score=29.37 Aligned_cols=61 Identities=18% Similarity=0.320 Sum_probs=43.4
Q ss_pred eccccccc-cccccCccccChhhhhhhHHHHHHHHhhhhhhhhhhcCcccchhHHhhhhhhhhhhhcHHHHHHH
Q psy8740 17 VNESIMDF-YWHYSSKELIDPAGKANFFKAIGVASQVFNTLSEVIQGPCTQNQQALAHSRLWDAVGGFLFLFSH 89 (252)
Q Consensus 17 l~~~~~~~-yw~~~~~~~i~~~g~~~~~~~~~~~~q~f~tlte~iqgpc~~nq~~l~~~~~~d~~~g~~~~~~~ 89 (252)
+.+....| |.+|+++|+. .|..+++.+.+-+.||-+++..-+. .+.....+..+|..-|..
T Consensus 60 ~~~~~~~~~yRf~~~~D~~------~~~~~l~~i~~~~gsLe~~f~~~~~------~~~~~~~~i~~~~~~~~~ 121 (232)
T PF09674_consen 60 DRKDLEGFFYRFQNGEDMY------AFFIALKRIYQEYGSLEEAFAKGYN------KSEDVLEAICAFIEEFFE 121 (232)
T ss_pred hHHHccCCCcCCCCHHHHH------HHHHHHHHHHHccCCHHHHHHhhcc------CCCCHHHHHHHHHHHHHH
Confidence 34556675 9999999997 6789999999999999999982111 235566666666644433
No 143
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=22.95 E-value=66 Score=27.20 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhhhhhhhhcCcccc
Q psy8740 43 FKAIGVASQVFNTLSEVIQGPCTQ 66 (252)
Q Consensus 43 ~~~~~~~~q~f~tlte~iqgpc~~ 66 (252)
.+.|..-+|-=..+.+++||||.-
T Consensus 117 ~~ki~~Le~~i~~~~~~Ck~pC~~ 140 (146)
T PF08702_consen 117 RQKIQRLEQDIDQQERYCKEPCKD 140 (146)
T ss_dssp HHHHHHHHHHHHHHHHCTTSTBEE
T ss_pred HHHHHHHHHHHHHHHHHccCcccc
Confidence 344556667777899999999975
No 144
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=22.23 E-value=1.2e+02 Score=31.27 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=40.9
Q ss_pred hhhhHHHHH--HHHhhhhhhhhhhcCcccchhHHhhhhhhhhhhhcHHHHHHHHHhhhhcccchHHHHHH
Q psy8740 39 KANFFKAIG--VASQVFNTLSEVIQGPCTQNQQALAHSRLWDAVGGFLFLFSHMQDKLSKHSSQVDLLKI 106 (252)
Q Consensus 39 ~~~~~~~~~--~~~q~f~tlte~iqgpc~~nq~~l~~~~~~d~~~g~~~~~~~~~~kLs~~~~ql~llke 106 (252)
...-.+++. |-+|+|.+||+||| +++|.+.++...-..+..|+.+-..||.-.++
T Consensus 349 ~~~~~~~~r~~v~nsI~kcLe~qIn-------------~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~ 405 (557)
T PF01763_consen 349 GEPVQQAFRDSVSNSINKCLEGQIN-------------NQFDTIEDLKEENQDLEKKLRELESELSRYRE 405 (557)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666 88999999999996 56788888887777777777775555555554
No 145
>PF00440 TetR_N: Bacterial regulatory proteins, tetR family; InterPro: IPR001647 This entry represents a DNA-binding domain with a helix-turn-helix (HTH) structure that is found in several bacterial and archaeal transcriptional regulators, such as TetR, the tetracycline resistance repressor. Numerous other transcriptional regulatory proteins also contain HTH-type DNA-binding domains, and can be grouped into subfamiles based on sequence similarity. The domain represented by this entry is found in a subfamily of proteins that includes the transcriptional regulators TetR, TetC, AcrR, BetI, Bm3R1, EnvR, QacR, MtrR, TcmR, Ttk, YbiH, and YhgD [, , ]. Many of these proteins function as repressors that control the level of susceptibility to hydrophobic antibiotics and detergents. They all have similar molecular weights, ranging from 21 to 25 kDa. The helix-turn-helix motif is located in the initial third of the protein. The 3D structure of the homodimeric TetR protein complexed with 7-chloro-tetracycline-magnesium has been determined to 2.1 A resolution []. TetR folds into ten alpha-helices with connecting turns and loops. The three N-terminal alpha-helices of the repressor form the DNA-binding domain: this structural motif encompasses an HTH fold with an inverse orientation compared with that of other DNA-binding proteins.; GO: 0003677 DNA binding; PDB: 3NPI_B 3IUV_A 3CCY_A 2JK3_A 2FX0_A 2JJ7_A 2WV1_B 3BTI_D 3BR6_E 3BR5_A ....
Probab=22.01 E-value=21 Score=23.72 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=15.0
Q ss_pred ccceeccccccccccccCccc
Q psy8740 13 ISTTVNESIMDFYWHYSSKEL 33 (252)
Q Consensus 13 ~~~~l~~~~~~~yw~~~~~~~ 33 (252)
|.-|+-=|-+-||+||.+||-
T Consensus 22 Ia~~~gvs~~~~y~~f~~k~~ 42 (47)
T PF00440_consen 22 IARRAGVSKGSFYRYFPSKDD 42 (47)
T ss_dssp HHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHccchhhHHHHcCCHHH
Confidence 344455566789999999973
No 146
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=21.64 E-value=2.6e+02 Score=19.92 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=5.2
Q ss_pred CCCCHHHHHHHHHhh
Q psy8740 192 KSYTPEDIEFMLACC 206 (252)
Q Consensus 192 ~~lTeeEI~~Li~e~ 206 (252)
..+|.+|+..++..+
T Consensus 13 ~~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 13 EDLSREEAKAAFDAI 27 (66)
T ss_dssp ----HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 344444444444443
No 147
>PRK00523 hypothetical protein; Provisional
Probab=20.91 E-value=1.8e+02 Score=22.25 Aligned_cols=32 Identities=6% Similarity=0.045 Sum_probs=27.2
Q ss_pred CCcccHHHHHHHHHh-CCCCCHHHHHHHHHhhc
Q psy8740 176 EGWVYPKDFKEKMEQ-QKSYTPEDIEFMLACCE 207 (252)
Q Consensus 176 dG~IS~~EL~~~L~~-~~~lTeeEI~~Li~e~D 207 (252)
+-.|+.+-++..+.+ +.++|+..|.++++...
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~mk 69 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSVK 69 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 357999999999988 57899999999998763
No 148
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=20.69 E-value=88 Score=25.76 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=19.4
Q ss_pred HHhhhhhCCCCCCcccHHHHHHHHHh
Q psy8740 165 SASFMEIDINNEGWVYPKDFKEKMEQ 190 (252)
Q Consensus 165 ~eAFk~fDkD~dG~IS~~EL~~~L~~ 190 (252)
.-...+||++++|.|+.-.++.++..
T Consensus 100 n~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 100 NWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 45788999999999999999988753
No 149
>KOG1954|consensus
Probab=20.40 E-value=1.2e+02 Score=30.56 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=40.9
Q ss_pred HhhhhhCCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCccccHHHHHHH
Q psy8740 166 ASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDR 222 (252)
Q Consensus 166 eAFk~fDkD~dG~IS~~EL~~~L~~~~~lTeeEI~~Li~e~D~DgDG~IdyeEFv~~ 222 (252)
+.|-..- --+|+||...-++-|-.. +++..-+..+.+-+|.|.||.+|=+||.-.
T Consensus 448 e~fy~l~-p~~gk~sg~~ak~~mv~s-klpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 448 EIFYTLS-PVNGKLSGRNAKKEMVKS-KLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hhhhccc-ccCceeccchhHHHHHhc-cCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 5555443 346899987777766443 466677888999999999999999999643
No 150
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=20.38 E-value=1.4e+02 Score=21.69 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=31.1
Q ss_pred CCCcccHHHHHHHHHh-CCCCCHHHHHHHHHhhccCC
Q psy8740 175 NEGWVYPKDFKEKMEQ-QKSYTPEDIEFMLACCETNH 210 (252)
Q Consensus 175 ~dG~IS~~EL~~~L~~-~~~lTeeEI~~Li~e~D~Dg 210 (252)
.++.++..++.+.+.. +..+|++.+...++..|.||
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4578999999999977 57899999999999999886
Done!