RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8740
(252 letters)
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 45.2 bits (107), Expect = 1e-06
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 166 ASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFTDRFH 224
F D + ++F+ ++ + T E + + N G++ Y F RF
Sbjct: 28 QEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFS 87
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 42.0 bits (99), Expect = 1e-04
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 159 LKDLTSSASFMEIDINNEGWVYPKDFKEKM-EQQKSYTPEDIEFMLACCETNHDGKIDYV 217
L +F D + G + K+ + + S E++E ++ + N DG++D+
Sbjct: 414 LSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFN 473
Query: 218 GFTD 221
F +
Sbjct: 474 EFVE 477
Score = 28.1 bits (63), Expect = 3.3
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 15/64 (23%)
Query: 168 FMEIDINNEGWVYPKDFKE---------------KMEQQKSYTPEDIEFMLACCETNHDG 212
F ++D NN+G + + ++ + S + I+ ++ + + G
Sbjct: 337 FRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSG 396
Query: 213 KIDY 216
I+Y
Sbjct: 397 SIEY 400
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 37.7 bits (88), Expect = 4e-04
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRF 223
F D N G + ++F+ + P D E + + + DG I + F F
Sbjct: 33 FAACDANRSGRLEREEFRALCTEL-RVRPADAEAVFQRLDADRDGAITFQEFARGF 87
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 40.1 bits (94), Expect = 4e-04
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 159 LKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVG 218
L ++F + D + G + + + + M++ ++N+DG +D+
Sbjct: 423 LSKDKLESAFQKFDQDGNGKISVDELASVFGLD-HLESKTWKEMISGIDSNNDGDVDFEE 481
Query: 219 FTD 221
F
Sbjct: 482 FCK 484
Score = 31.2 bits (71), Expect = 0.29
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKS---------YTPEDIEFMLACCETNHDGKIDY 216
F ID N +G + ++ + + +++ +L + + +G IDY
Sbjct: 352 FRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDY 409
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 5e-04
Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 89/231 (38%)
Query: 17 VNESIMDFYWHYSSKELID------PAGKANFFKAIGVASQVFNTLSE--VIQGPCTQNQ 68
+NE + + S K L+ PA + A F L +I
Sbjct: 1710 INEHSTSYTFR-SEKGLLSATQFTQPA----LT-LMEKA--AFEDLKSKGLIPADA---- 1757
Query: 69 QALA-HSRL--WDA---VGGFLFLFSHMQDKLSKHSSQVDLLKI---LLN--LQKDMITM 117
A HS L + A + + + S V+++ + + +D +
Sbjct: 1758 -TFAGHS-LGEYAALASLADVMSI-----------ESLVEVVFYRGMTMQVAVPRDELGR 1804
Query: 118 ----MLSMLEGNVVNGTIGKQMVDTLVESAANVELILKYFDMFLKLKDLTSSASFMEIDI 173
M+++ G V ++ + +VE + +EI +
Sbjct: 1805 SNYGMIAINPGRVAAS-FSQEALQYVVERVGK------------------RTGWLVEI-V 1844
Query: 174 N-N-EGWVY---------------PKDFKEK----MEQQKSYTPEDIEFML 203
N N E Y K + +E QKS + E++E L
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 39.7 bits (93), Expect = 5e-04
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 159 LKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVG 218
L +F D +N G + + E + +L+ + N+DG++D+
Sbjct: 415 LSRERLERAFRMFDSDNSGKISSTELATIFGVS-DVDSETWKSVLSEVDKNNDGEVDFDE 473
Query: 219 FTD 221
F
Sbjct: 474 FQQ 476
Score = 29.3 bits (66), Expect = 1.5
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSY------------TPEDIEFMLACCETNHDGKID 215
F ++D N +G + + E ++ +++ +L + + +G I+
Sbjct: 341 FHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIE 400
Query: 216 Y 216
Y
Sbjct: 401 Y 401
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 39.3 bits (92), Expect = 8e-04
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 159 LKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVG 218
+ +F D + G + ++ S + + +L + N D ID+
Sbjct: 432 FSEERLRRAFNLFDTDKSGKITKEELANLFGLT-SISEKTWNDVLGEADQNKDNMIDFDE 490
Query: 219 FTD 221
F
Sbjct: 491 FVS 493
Score = 30.8 bits (70), Expect = 0.44
Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSY---------TPEDIEFMLACCETNHDGKIDY 216
F ++D N +G + K+ E +++ E+++ +L + + +G I+Y
Sbjct: 361 FKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEY 418
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 35.6 bits (82), Expect = 0.007
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQ--QKSYTPEDIEFMLACCETNHDGKIDYVGF 219
F EID + V ++FK + + ED + + N G + + F
Sbjct: 136 FDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEF 189
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 35.3 bits (82), Expect = 0.009
Identities = 12/49 (24%), Positives = 28/49 (57%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDY 216
F+ +D + +G++ + K+ +E+ P + + +L +++ GKIDY
Sbjct: 58 FLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKIDY 106
Score = 28.8 bits (65), Expect = 1.3
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQ------QKSYTPEDIEFMLACCETNHDGKIDY 216
F D++N+G + + + ++ M+ + N+DGKID+
Sbjct: 128 FRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDF 182
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 34.5 bits (79), Expect = 0.017
Identities = 9/93 (9%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 133 KQMVDTLVESAANVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQK 192
M + + + +V + + + F +D++ +G V ++F+ + +
Sbjct: 83 LAMWEKTIATCKSVADLPAWCQNRIP-------FLFKGMDVSGDGIVDLEEFQNYCKNFQ 135
Query: 193 SYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225
D+ + D + + ++
Sbjct: 136 -LQCADVPAVYNVITDGGKVTFDLNRYKELYYR 167
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 34.8 bits (80), Expect = 0.021
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 155 MFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKI 214
+ L L A F +ID N+ G + K+F+E + + + + + +
Sbjct: 183 VANDLAALV--ADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDV 240
Query: 215 DY 216
+
Sbjct: 241 GF 242
Score = 33.6 bits (77), Expect = 0.047
Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 155 MFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQ--QKSYTPEDIEFMLACCETNHDG 212
+ L L L + D + G + ++ ++ +E + E + + +
Sbjct: 248 LGLCLLVLR--ILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSK 305
Query: 213 KIDY 216
+ Y
Sbjct: 306 SLSY 309
Score = 32.9 bits (75), Expect = 0.088
Identities = 14/148 (9%), Positives = 44/148 (29%), Gaps = 15/148 (10%)
Query: 87 FSHMQDKLSKHSS----QVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVES 142
F+H +D+ + + + L + + +
Sbjct: 33 FAHKEDRDRLEAQIAQKEQEQKAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRL 92
Query: 143 AANVELILKYFDMFLKLKDLTSSAS----------FMEIDINNEGWVYPKDFKEKMEQQK 192
A+ ++ + + +L+ S F+ ++ G +D K+ + +
Sbjct: 93 ASLLKDLEDDASGYNRLRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYA 152
Query: 193 S-YTPEDIEFMLACCETNHDGKIDYVGF 219
++ + E + G++ Y+
Sbjct: 153 DTIPEGPLKKLFVMVENDTKGRMSYITL 180
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 34.2 bits (79), Expect = 0.021
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGF 219
F ++D N+ G + ++ + DI +L + N G I Y F
Sbjct: 45 FYKLDTNHNGSLSHREIYTVLASVG-IKKWDINRILQALDINDRGNITYTEF 95
Score = 27.6 bits (62), Expect = 3.1
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDG--------KIDY 216
F +ID + +G++ D + K DI+ + G KI +
Sbjct: 114 FNKIDKDEDGYISKSDIVSLV-HDKVLDNNDIDNFFLSVHSIKKGIPREHIINKISF 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.022
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 11/116 (9%)
Query: 89 HMQDKLS--KHSSQVDLLKILL-NLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAAN 145
HM + ++ + D+L + + + + ++ + K+ +D ++ S
Sbjct: 6 HMDFETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSI----LSKEEIDHIIMSKDA 60
Query: 146 VELILKYFDMFLKLKDLTSSASFME-IDINNEGWVYPKDFKEKMEQQKSYTPEDIE 200
V L+ F L K F+E + N ++ K + Q T IE
Sbjct: 61 VSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIE 114
Score = 32.5 bits (73), Expect = 0.13
Identities = 39/267 (14%), Positives = 81/267 (30%), Gaps = 75/267 (28%)
Query: 15 TTVNESIMDF-----YWHYSSKELIDPAGKAN----FFKAIGVASQVFNTLSEVIQGPCT 65
TT + + DF H S K + Q L + T
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ---DLPREV---LT 324
Query: 66 QNQQALA--------HSRLWDAVGGFLFLFSHMQ-DKLSKH-SSQVDLL---------KI 106
N + L+ WD + H+ DKL+ S +++L
Sbjct: 325 TNPRRLSIIAESIRDGLATWDN-------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 107 LLNLQKDM-ITMM-LSMLEGNVVNGTIGKQMVDTLVESAA----NVELILKYFDMFLKLK 160
L I + LS++ +V+ + +V+ L + + E + ++L+LK
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDV-MVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 161 DLTSSASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKI-DYVGF 219
+ + NE ++ + + K++ +D D ++G
Sbjct: 437 ----------VKLENEYALH-RSIVDHYNIPKTFDSDD------LIPPYLDQYFYSHIG- 478
Query: 220 TDRFH----EPAKEIGFNLAVLLTNLS 242
H E + + ++ +
Sbjct: 479 ---HHLKNIEHPERMTL-FRMVFLDFR 501
Score = 31.7 bits (71), Expect = 0.24
Identities = 41/279 (14%), Positives = 71/279 (25%), Gaps = 82/279 (29%)
Query: 17 VNESIMDFY-WHYSS--KELIDPAGKANFFKAIGVASQVFNTLSEVIQG------PCTQN 67
V E + Y + S E P+ + I +++N + P +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMY--IEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 68 QQALAHSRLWDAV-----GGF------------LFLFSHMQDK-----LSKHSSQVDLLK 105
+QAL R V G + M K L +S +L+
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 106 ILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAANVELILKYFDMFLKLKDLTSS 165
+L L L ++ N D + I LK K +
Sbjct: 201 MLQKL--------LYQIDPN------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 166 ASFMEI--DINNEGWVYPKDFKEKMEQQKSYTPEDIE-FMLAC---CETNHDGKIDYVGF 219
+ + ++ N + F L+C T D++
Sbjct: 247 ---LLVLLNVQN--------------------AKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 220 TDRFHEPAKEI--GFN----LAVLLTNLSEHMPNEPRLA 252
H ++LL L + PR
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 34.0 bits (78), Expect = 0.026
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 159 LKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQK-SYTPEDIEFMLACCETNHDGKIDY 216
L + A F +D + G + ++K + + ED E C+ + G++D
Sbjct: 106 LIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDV 164
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 31.4 bits (72), Expect = 0.031
Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPE-DIEFMLACCETNHDGKIDY 216
F EID+N +G V ++ K + ++++ E ++ + + + +G+ID
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQ 55
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 32.9 bits (76), Expect = 0.048
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 153 FDMFL-----KLKDLTS----SASFMEIDINNEGWVYPKDFKEKM-EQQKSYTPEDIEFM 202
F +FL KLK +F +D + +G + +E + +TPE+I+ M
Sbjct: 77 FTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNM 136
Query: 203 LACCETNHDGKIDYVGFT 220
A + G +DY
Sbjct: 137 WAAFPPDVAGNVDYKNIC 154
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 32.3 bits (74), Expect = 0.079
Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSY-TPEDIEFMLACCETNHDGKIDYVGF 219
F ++D + + +F++ + + + E + + N G +D F
Sbjct: 43 FRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEF 95
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 31.6 bits (72), Expect = 0.14
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 128 NGTIGKQMVD-----TLVESAANVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVYPK 182
G + + + A EL + +++ + F D + G +
Sbjct: 75 CGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAV-FDIFDKDGSGTITLD 133
Query: 183 DFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDY 216
++K + S + ED E C+ ++ G +D
Sbjct: 134 EWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDV 168
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 31.5 bits (72), Expect = 0.15
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDY 216
F + D + G + ++ + E +L C+ N+DG++D+
Sbjct: 129 FQQFDSDGSGKITNEELGRLFGVTE-VDDETWHQVLQECDKNNDGEVDF 176
Score = 26.9 bits (60), Expect = 4.7
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSY------------TPEDIEFMLACCETNHDGKID 215
F ++D N +G + K+ E + + +++ +L + + +G I+
Sbjct: 46 FRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIE 105
Query: 216 YVGF 219
Y F
Sbjct: 106 YSEF 109
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 30.6 bits (70), Expect = 0.18
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDY 216
+ +D++ +G + ++ K + E + + + N DG I
Sbjct: 81 YKLMDVDGDGKLTKEEVTSFF---KKHGIEKVAEQVMKADANGDGYITL 126
Score = 26.0 bits (58), Expect = 8.9
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219
F EID+N +G V ++ K + ++ + ++ + + + +G+ID F
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEF 58
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 30.3 bits (69), Expect = 0.18
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 168 FMEIDINNEGWVYPKDFKEKM----EQQKSYTPEDIEFMLACCETNHDGKIDY 216
F +D + G++ ++ + + + T + + LA +T+ DGKI
Sbjct: 48 FGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGV 100
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 31.3 bits (71), Expect = 0.19
Identities = 9/92 (9%), Positives = 24/92 (26%), Gaps = 8/92 (8%)
Query: 134 QMVDTLVESAANVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQKS 193
+M V+S E + ++ ++ F D + + + ++
Sbjct: 88 KMWAECVKSVEKGESLPEWLTKYMN-------FMFDVNDTSGDNIIDKHEYSTVY-MSYG 139
Query: 194 YTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225
D + + F + E
Sbjct: 140 IPKSDCDAAFDTLSDGGKTMVTREIFARLWTE 171
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 30.5 bits (70), Expect = 0.23
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 153 FDMFL-----KLKDLTSSASFMEI----DINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFM 202
F MFL KL D G+++ +E + +T E+++ M
Sbjct: 58 FTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEM 117
Query: 203 LACCETNHDGKIDYVGFT 220
+ G +YV FT
Sbjct: 118 YREAPIDKKGNFNYVEFT 135
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 29.5 bits (67), Expect = 0.24
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDY 216
F D N +G + + + + S + ++++ M+A +T+ DG ID+
Sbjct: 9 FKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDF 57
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 31.2 bits (70), Expect = 0.25
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 168 FMEIDINNEGWVYPKDFKEKM---------EQQKSYTPEDIEFMLACCETNHDGKIDYVG 218
+ + D ++ G++ + K + + + E + M+ + N DG++D
Sbjct: 110 WRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLND 169
Query: 219 F 219
Sbjct: 170 L 170
Score = 30.0 bits (67), Expect = 0.67
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 168 FMEIDINNEGWVYPKDFKEKME-----QQKSYTPEDIE----FMLACCETNHDGKIDY 216
F D++ G + + ++ + S + D++ +L C+ N DGKI
Sbjct: 202 FAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQK 259
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 31.0 bits (70), Expect = 0.26
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 153 FDMFLKLKDLTSSASFMEI----DINNEGWVYPKDFKEKM---------EQQKSYTPEDI 199
F + + + L S FM+ D ++ G++ ++ K + + E
Sbjct: 90 FLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYT 149
Query: 200 EFMLACCETNHDGKIDYVGF 219
+ ML ++N+DGK++
Sbjct: 150 DLMLKLFDSNNDGKLELTEM 169
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 29.6 bits (67), Expect = 0.32
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 153 FDMFLKLKDLTS------SASFMEIDINNEGWVYPKDFKEKMEQQKSY----TPEDIEFM 202
F ++ ++ F +D + G++ + K +++ +S T + +
Sbjct: 26 PKKFFQISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTF 85
Query: 203 LACCETNHDGKIDY 216
LA + + DGKI
Sbjct: 86 LAAADHDGDGKIGA 99
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 30.6 bits (69), Expect = 0.37
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 155 MFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKI 214
L L S++ + +D + +G V + K M + E +T+ GK+
Sbjct: 121 GEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMM-KAFDVPQEAAYTFFEKADTDKSGKL 179
Query: 215 DY 216
+
Sbjct: 180 ER 181
Score = 29.4 bits (66), Expect = 0.89
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 10/62 (16%)
Query: 168 FMEIDINNEGWVYPKDFKEKME---QQKSYTPEDIEFMLACCE-------TNHDGKIDYV 217
F D++++G + + + Q + T E +E M +
Sbjct: 42 FDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLRE 101
Query: 218 GF 219
+
Sbjct: 102 DW 103
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 29.1 bits (66), Expect = 0.38
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQ--QKSYTPEDIEFMLACCETNHDGKIDY 216
F D N +G + +FK M++ ++ T ++E + + + +G ID
Sbjct: 14 FKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDI 64
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 28.8 bits (65), Expect = 0.40
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGF 219
F D N +G + + + ++ S TP+++ M+A +T+ DG I + F
Sbjct: 17 FKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEF 68
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 30.3 bits (69), Expect = 0.40
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 168 FMEIDINNEGWVYPKDFKEKM---EQQKSYTPEDIEFMLACCETNHDGKIDY 216
F DI+ G + ++ K + + + I+ +L + N DG+ID+
Sbjct: 135 FKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDF 186
Score = 28.7 bits (65), Expect = 1.2
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219
F+ +D++N G + ++ + +++ P DI +L ++N G+I Y F
Sbjct: 63 FIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDF 115
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional
regulator, structural genomics, center for structural
genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Length = 228
Score = 30.3 bits (68), Expect = 0.41
Identities = 18/151 (11%), Positives = 46/151 (30%), Gaps = 11/151 (7%)
Query: 24 FYWHYSSKELIDPAGKANFFKAIGVASQVFNTLSEVIQGPCTQNQQALAHSRLW-DAVGG 82
Y+H+ +K I ++ ++ + ++ + + + D +
Sbjct: 42 LYYHFRNKSDI-------IYEIFQEYEKLVDYYLDIPEDRPITLEDMTFYLESVFDGLWS 94
Query: 83 FLFLFSHMQDKLSKHSSQVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVES 142
+ F ++ L L + + + + G I Q D
Sbjct: 95 YRFFHRDLEYLLDSDP---RLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAM 151
Query: 143 AANVELILKYFDMFLKLKDLTSSASFMEIDI 173
+ NV L++ + FLK + + +
Sbjct: 152 SLNVWLVITNWMAFLKTAHAAEEPASLSLTE 182
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 30.1 bits (68), Expect = 0.42
Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 166 ASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDY 216
F +D N + + ++ +TN+DG +
Sbjct: 98 LFFRAVDTNEDNNISRDEYGIFF-GMLGLDKTMAPASFDAIDTNNDGLLSL 147
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 29.8 bits (68), Expect = 0.45
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 13/80 (16%)
Query: 153 FDMFL-----KLKDLTSSAS-----FMEIDINNEGWVYPKDFKEKMEQ--QKSYTPEDIE 200
F +K T + F +D G + + ++ + T ++E
Sbjct: 57 LATFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDA-LTSSEVE 115
Query: 201 FMLACCETNHDGKIDYVGFT 220
++ + DG I+Y F
Sbjct: 116 ELMKEVSVSGDGAINYESFV 135
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 29.5 bits (67), Expect = 0.49
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 22/90 (24%)
Query: 131 IGKQMVDTLVESAANVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKM-- 188
I + + A E +K F +F D + G V D + +
Sbjct: 67 IEVNEKELDATTKAKTEDFVKAFQVF---------------DKESTGKVSVGDLRYMLTG 111
Query: 189 --EQQKSYTPEDIEFMLACCETNHDGKIDY 216
E+ T +++ +L E + +G+IDY
Sbjct: 112 LGEKL---TDAEVDELLKGVEVDSNGEIDY 138
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 28.8 bits (65), Expect = 0.57
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 168 FMEIDINNEGWVYPKDFKEKM----EQQKSYTPEDIEFMLACCETNHDGKIDY 216
F ID + G++ + K + + T + + ++ + + DGKI
Sbjct: 47 FRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGA 99
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 29.7 bits (67), Expect = 0.57
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 143 AANVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEF 201
+ +LK + + S + ID + +G+V +FK ++ T +
Sbjct: 83 VNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAIT 142
Query: 202 MLACCETNHDGKIDY 216
+ N +G+I
Sbjct: 143 CFNTLDFNKNGQISR 157
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 29.2 bits (66), Expect = 0.57
Identities = 7/54 (12%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQ--QKSYTPEDIEFMLACCETNHDGKIDYVGF 219
F + + + + + + ED + M+ + + DG ++ F
Sbjct: 46 FSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEF 99
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 29.7 bits (67), Expect = 0.63
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 166 ASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHE 225
D N +G + +F + + + +TN +G++ +
Sbjct: 106 GIVGMCDKNADGQINADEFAAWL-TALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVRD 164
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 27.9 bits (63), Expect = 0.83
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219
F ID +N G + + K+ +++ +I+ ++ + + G IDY F
Sbjct: 29 FKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEF 81
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 28.7 bits (65), Expect = 1.0
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 12/77 (15%)
Query: 153 FDMFL-----KLKDLTSSASFMEI----DINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFM 202
++ +L + D + +++ D N G++ K + + T ++
Sbjct: 66 YEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDA 125
Query: 203 LACCETNHDGKIDYVGF 219
L + + IDY F
Sbjct: 126 LN--AFSSEDNIDYKLF 140
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 28.3 bits (64), Expect = 1.0
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSY----TPEDIEFMLACCETNHDGKIDY 216
F +D + G++ ++ K ++ ++ + + +LA +++HDGKI
Sbjct: 47 FEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGA 99
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 28.3 bits (63), Expect = 1.3
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQ-QKSYTPEDIEFMLACCETNHDGKIDYVGFTDRFHEP 226
+ME D+N G + K +E+ T +++ ++ + + Y F
Sbjct: 54 YMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLGK 113
Query: 227 AKEI 230
I
Sbjct: 114 RSAI 117
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 28.6 bits (65), Expect = 1.3
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 155 MFLKLKDLTS----SASFMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNH 210
L L + A+F D + G++ P + ++ ++ IE ++ + ++
Sbjct: 88 ATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQAC-EEFGVEDVRIEELMRDVDQDN 146
Query: 211 DGKIDY 216
DG+IDY
Sbjct: 147 DGRIDY 152
Score = 25.9 bits (58), Expect = 9.7
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219
F ID + G + ++ K +++ + +I ++ + ++ G IDY F
Sbjct: 33 FNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEF 85
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 27.7 bits (62), Expect = 1.4
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDYVGF 219
F++ D + +G+V + +E + + + + C+T GK+ F
Sbjct: 16 FLKTDKDMDGFVSGLEVREIFLKTG-LPSTLLAHIWSLCDTKDCGKLSKDQF 66
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 28.2 bits (63), Expect = 1.6
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 166 ASFMEIDINNEGWVYPKDFKEKMEQQKSY--TPEDIEFMLACCETNHDGKIDY 216
A+ D + +G V D + ++ + A +T+ DGK+
Sbjct: 102 AALGVADTDGDGAVTVADTARAL---TAFGVPEDLARQAAAALDTDGDGKVGE 151
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 26.7 bits (60), Expect = 1.6
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 168 FMEIDINNEGWVYPKDFKEKM-EQQKSYTPEDIEFMLACCETNHDGKIDY 216
F + D N +G + +F+E +T EDI + + +G+++
Sbjct: 7 FEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNA 56
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 27.9 bits (63), Expect = 1.8
Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 11/78 (14%)
Query: 153 FDMFL-----KLKDLTS----SASFMEIDINNEGWVYPKDFKEKM-EQQKSYTPEDIEFM 202
F FL K+ +F D + +G++ K+ + +++ E+I+ +
Sbjct: 67 FTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNV 126
Query: 203 LACCETNHDGKIDYVGFT 220
+ + +Y
Sbjct: 127 WKDAPLK-NKQFNYNKMV 143
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 27.6 bits (62), Expect = 1.8
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 168 FMEIDINNEGWVYPKDFKEKME----QQKSYTPEDIEFMLACCETNHDGKIDY 216
F ID + G++ + K ++ ++ T + + L +++ DG I
Sbjct: 48 FFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGV 100
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 28.0 bits (63), Expect = 2.5
Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 153 FDMFL-----KLKDLTS----SASFMEIDINNEGWVYPKDFKEKM-EQQKSYTPEDIEFM 202
F MFL ++ +F D + G + K + + ++ ++++
Sbjct: 108 FTMFLTIFGDRIAGTDEEDVIVNAFNLFDEGD-GKCKEETLKRSLTTWGEKFSQDEVDQA 166
Query: 203 LACCETNHDGKIDYVGFT 220
L+ + +G ID F
Sbjct: 167 LSEAPIDGNGLIDIKKFA 184
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded
antiparallel beta sheet, alpha helix linker, peptide
binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2
PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Length = 115
Score = 27.0 bits (59), Expect = 2.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 180 YPKDFKEKMEQQKSYTPEDIEF 201
Y K +E K+ +PED+E+
Sbjct: 94 YKKKDQETKRWLKNASPEDVEY 115
>2q7a_A Cell surface heme-binding protein; beta sandwich; HET: HEM; 2.10A
{Streptococcus pyogenes}
Length = 152
Score = 27.5 bits (60), Expect = 3.0
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Query: 124 GNVVNGTIGKQMVDTLVESAANVELILK---YFDMFLKLKDLTSSASFMEIDINNEGWVY 180
G + IG+ MV+ V S A +E+ + L D + + F +
Sbjct: 27 GGEHSFDIGQGMVEGTVYSDAMLEVSDAGKIVLTFRMSLADYSGNYQFWIQPGGTGSFQA 86
Query: 181 PKDFKEKMEQQKSYTPEDIEF 201
+ + T DI
Sbjct: 87 VDYNITQKGTDTNGTTLDIAI 107
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 26.9 bits (60), Expect = 3.1
Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 153 FDMFLKLKDLTS------SASFMEIDINNEGWVYPKDFKEKM----EQQKSYTPEDIEFM 202
F ++ L F +D + G++ + + + + ++ + +
Sbjct: 26 HKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTL 85
Query: 203 LACCETNHDGKIDY 216
+A + + DGKI
Sbjct: 86 MAAGDKDGDGKIGV 99
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 26.8 bits (60), Expect = 3.2
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 168 FMEIDINNEGWVYPKDFKEKME----QQKSYTPEDIEFMLACCETNHDGKIDY 216
F ID + G++ + K ++ ++ T + + LA + + DG I
Sbjct: 47 FYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGV 99
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 27.6 bits (61), Expect = 3.2
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPED-IEFMLACCETNHDGKIDY 216
F D G V +DF + T + + + + N DG I+
Sbjct: 95 FNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINK 144
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 26.4 bits (59), Expect = 3.3
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 168 FMEIDINNEGWVYPKDFK-------EKMEQQKSYTPEDIEFMLACCETNHDGKIDY 216
F ++D N +G+V + + K E ++ + N DGKI
Sbjct: 13 FKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISK 68
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 27.9 bits (62), Expect = 3.5
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 168 FMEIDINNEGWVYPKDFKEKM----EQQKSYTPEDIEFMLACCETNHDGKIDYVGF 219
F D + G++ + + M E+ T E+++ M+ + + DG+++Y F
Sbjct: 391 FRVFDKDGNGYISAAELRHVMTNLGEKL---TDEEVDEMIREADIDGDGQVNYEEF 443
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 27.1 bits (61), Expect = 3.6
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 16/80 (20%)
Query: 153 FDMFL-----KLKDLTSSASFME----IDINNEGWVYPKDFKEKM----EQQKSYTPEDI 199
F FL K+K+ S +E D + G + + + M E+ T +++
Sbjct: 65 FPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKL---TDDEV 121
Query: 200 EFMLACCETNHDGKIDYVGF 219
+ M+ + + DG I+Y F
Sbjct: 122 DEMIREADIDGDGHINYEEF 141
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural
protein, Z-DISK structural complex; NMR {Homo sapiens}
SCOP: a.39.1.7
Length = 75
Score = 25.9 bits (57), Expect = 4.0
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 182 KDFKEKMEQQKSYTPEDIEFMLA-----CCETNHDGKIDYVGFTDRF 223
K + E ++ P+ ++ + + G +DY F+
Sbjct: 23 KPYILAEELRRELPPDQAQYCIKRMPAYSGPGSVPGALDYAAFSSAL 69
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.79A
{Sinorhizobium meliloti}
Length = 361
Score = 27.4 bits (61), Expect = 4.1
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 195 TPEDIEFMLACCETNHDGKIDYVGFTDRFHEP----AKEI 230
+ + + + G+I + +++ F P A E+
Sbjct: 124 SFDQLAKLRRVQAET--GRIFSILYSEHFESPATVKAGEL 161
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 27.4 bits (61), Expect = 4.3
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGFT 220
FM +D + G + + +P+ M+ +T+ +G I + F
Sbjct: 57 FMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFM 110
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 26.4 bits (59), Expect = 4.5
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSY----TPEDIEFMLACCETNHDGKIDY 216
F ID + G++ ++ K ++ + T + + L + + DGKI
Sbjct: 48 FKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGI 100
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 27.1 bits (61), Expect = 4.6
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 16/80 (20%)
Query: 153 FDMFL-----KLKDLTS----SASFMEIDINNEGWVYPKDFKEKM----EQQKSYTPEDI 199
F FL K+KD S +F D + G++ + + M E+ T E++
Sbjct: 66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKL---TDEEV 122
Query: 200 EFMLACCETNHDGKIDYVGF 219
+ M+ + + DG+++Y F
Sbjct: 123 DEMIREADIDGDGQVNYEEF 142
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 26.7 bits (60), Expect = 5.1
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 153 FDMFL-----KLKDLTS----SASFMEIDINNEGWVYPKDFKEKM-EQQKSYTPEDIEFM 202
+D F K+ +F D ++ G + K+ + E ++ T E++ M
Sbjct: 78 YDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAM 137
Query: 203 LACCETNHDGKIDYVGF 219
+ + + DG+I+ F
Sbjct: 138 IEEFDLDGDGEINENEF 154
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 26.7 bits (60), Expect = 5.6
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQ--KSYTPEDIEFMLACCETNHDGKIDY 216
F E D N +G + + +E M DIE ++ + N DG++D+
Sbjct: 94 FREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDF 144
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 26.3 bits (59), Expect = 6.0
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 153 FDMFL-----KLKDLTS----SASFMEIDINNEGWVYPKDFKEKM-EQQKSYTPEDIEFM 202
F FL ++K TS +F D G++ ++ + P +
Sbjct: 61 FPEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEF 120
Query: 203 LACCETNHDGKIDYVGFT 220
L ET G+I Y F
Sbjct: 121 LGITETE-KGQIRYDNFI 137
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 25.2 bits (56), Expect = 7.0
Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDYVGF 219
F D + +G + + + M + E+++ M+ + + DG+++Y F
Sbjct: 12 FRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEF 64
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 25.7 bits (57), Expect = 7.2
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 154 DMFLKLKDLTSSASFMEI----DINNEGWVYPKDFKEKMEQ--QKSYTPEDIEFMLACCE 207
+KD S E D + G++ + + M +K T E+++ M+ +
Sbjct: 17 YFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEK-LTDEEVDEMIREAD 75
Query: 208 TNHDGKIDYVGF 219
+ DG+++Y F
Sbjct: 76 IDGDGQVNYEEF 87
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 26.7 bits (58), Expect = 7.9
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 184 FKEKMEQQKSYTPEDIEF--MLACCETNHDGK--IDYVGFTDRFHE 225
+ M+ + ++ +DI + ++ DG IDY RF++
Sbjct: 264 TAQVMQARHAWEHDDIRWHHRYVDLMSDVDGMTHIDY----TRFND 305
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 25.2 bits (56), Expect = 8.6
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQ-QKSYTPEDIEFMLACCETNHDGKIDYVGF 219
F D + G++ + + M + T E++E M+ + + DG+++Y F
Sbjct: 15 FKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEF 67
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 26.0 bits (58), Expect = 8.7
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQ-KSYTPEDIEFMLACCETNHDGKIDY 216
F D N +G++ ++ E + + T EDIE ++ + N+DG+ID+
Sbjct: 102 FRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDF 151
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 26.0 bits (58), Expect = 9.9
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 168 FMEIDINNEGWVYPKDFKEKMEQQKSYTPEDIEFMLACCETNHDGKIDY 216
F D + G++ + ++ + I+ M+ + ++DG+IDY
Sbjct: 88 FSYFDKDGSGYITLDEIQQACKDFG-LDDIHIDDMIKEIDQDNDGQIDY 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.391
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,739,030
Number of extensions: 212902
Number of successful extensions: 769
Number of sequences better than 10.0: 1
Number of HSP's gapped: 757
Number of HSP's successfully gapped: 138
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)