Query psy8741
Match_columns 62
No_of_seqs 42 out of 44
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 18:01:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2243|consensus 99.9 4.2E-28 9.1E-33 207.4 2.6 62 1-62 4030-4091(5019)
2 PF00036 EF-hand_1: EF hand; 97.8 6.7E-06 1.5E-10 42.3 1.1 25 32-56 4-28 (29)
3 PF13405 EF-hand_6: EF-hand do 97.5 4.4E-05 9.5E-10 38.4 1.0 23 33-55 5-27 (31)
4 PF13202 EF-hand_5: EF hand; P 97.3 8.6E-05 1.9E-09 36.9 0.8 22 33-54 4-25 (25)
5 PF13499 EF-hand_7: EF-hand do 96.9 0.00039 8.5E-09 38.5 1.2 22 33-54 45-66 (66)
6 PF13499 EF-hand_7: EF-hand do 96.9 0.00045 9.7E-09 38.2 1.3 27 32-58 4-30 (66)
7 smart00054 EFh EF-hand, calciu 96.7 0.0009 1.9E-08 29.7 1.4 24 33-56 5-28 (29)
8 PF13833 EF-hand_8: EF-hand do 96.3 0.0022 4.7E-08 34.6 1.5 26 31-56 28-53 (54)
9 cd00051 EFh EF-hand, calcium b 96.3 0.0031 6.6E-08 31.9 1.9 25 33-57 5-29 (63)
10 cd00052 EH Eps15 homology doma 96.2 0.0031 6.8E-08 34.2 1.5 26 32-57 3-28 (67)
11 KOG0027|consensus 96.0 0.003 6.4E-08 40.6 1.2 26 31-56 88-113 (151)
12 smart00027 EH Eps15 homology d 95.1 0.011 2.3E-07 35.6 1.1 26 32-57 14-39 (96)
13 PTZ00184 calmodulin; Provision 94.9 0.015 3.3E-07 34.9 1.4 26 31-56 87-112 (149)
14 cd05027 S-100B S-100B: S-100B 94.7 0.015 3.3E-07 35.6 1.0 25 32-56 12-38 (88)
15 KOG0034|consensus 94.5 0.022 4.7E-07 39.8 1.6 24 33-56 109-132 (187)
16 cd05022 S-100A13 S-100A13: S-1 94.4 0.019 4.2E-07 35.5 1.0 25 32-56 12-37 (89)
17 KOG0034|consensus 94.2 0.025 5.5E-07 39.5 1.4 26 32-57 151-176 (187)
18 PTZ00183 centrin; Provisional 94.1 0.031 6.8E-07 34.2 1.5 24 33-56 22-45 (158)
19 cd00213 S-100 S-100: S-100 dom 94.1 0.028 6.1E-07 32.9 1.2 25 32-56 12-38 (88)
20 cd05026 S-100Z S-100Z: S-100Z 93.8 0.031 6.7E-07 34.1 1.1 26 32-57 14-41 (93)
21 cd05025 S-100A1 S-100A1: S-100 93.7 0.031 6.7E-07 33.4 1.0 25 32-56 13-39 (92)
22 KOG0044|consensus 93.6 0.048 1E-06 38.5 2.0 26 32-57 104-129 (193)
23 cd05031 S-100A10_like S-100A10 93.4 0.036 7.8E-07 33.3 0.9 25 32-56 12-38 (94)
24 cd00252 SPARC_EC SPARC_EC; ext 93.2 0.046 9.9E-07 35.4 1.2 22 32-53 52-73 (116)
25 PTZ00184 calmodulin; Provision 92.6 0.075 1.6E-06 31.9 1.5 24 33-56 16-39 (149)
26 KOG0027|consensus 92.3 0.072 1.6E-06 34.2 1.2 27 32-58 12-38 (151)
27 PTZ00183 centrin; Provisional 92.0 0.099 2.1E-06 32.0 1.5 26 32-57 94-119 (158)
28 cd05022 S-100A13 S-100A13: S-1 90.5 0.19 4.1E-06 31.1 1.8 25 32-56 51-75 (89)
29 COG5126 FRQ1 Ca2+-binding prot 90.1 0.16 3.4E-06 35.2 1.3 25 32-56 24-48 (160)
30 cd05030 calgranulins Calgranul 90.0 0.23 5E-06 29.9 1.8 27 31-57 54-80 (88)
31 KOG2643|consensus 89.1 0.26 5.5E-06 39.8 1.9 33 24-56 421-453 (489)
32 cd05031 S-100A10_like S-100A10 88.5 0.33 7.1E-06 29.0 1.7 26 32-57 55-80 (94)
33 PF14658 EF-hand_9: EF-hand do 88.5 0.32 7E-06 29.6 1.7 23 34-56 41-64 (66)
34 cd00252 SPARC_EC SPARC_EC; ext 88.2 0.26 5.5E-06 32.0 1.1 23 32-54 84-106 (116)
35 cd05026 S-100Z S-100Z: S-100Z 87.9 0.4 8.6E-06 29.1 1.8 25 32-56 57-81 (93)
36 cd00052 EH Eps15 homology doma 87.6 0.4 8.6E-06 25.7 1.5 25 31-55 36-60 (67)
37 cd05023 S-100A11 S-100A11: S-1 87.2 0.46 1E-05 29.1 1.8 25 32-56 56-80 (89)
38 cd05029 S-100A6 S-100A6: S-100 86.7 0.36 7.7E-06 29.4 1.1 24 33-56 15-40 (88)
39 cd05025 S-100A1 S-100A1: S-100 86.2 0.54 1.2E-05 27.9 1.7 26 32-57 56-81 (92)
40 cd05029 S-100A6 S-100A6: S-100 85.0 0.37 8.1E-06 29.3 0.6 26 30-55 53-78 (88)
41 COG5126 FRQ1 Ca2+-binding prot 84.4 0.52 1.1E-05 32.6 1.1 23 32-54 96-118 (160)
42 PLN02964 phosphatidylserine de 83.9 0.53 1.2E-05 38.6 1.2 27 31-57 218-244 (644)
43 PRK12309 transaldolase/EF-hand 83.8 0.63 1.4E-05 35.7 1.5 23 33-55 362-384 (391)
44 KOG0028|consensus 83.6 0.69 1.5E-05 33.0 1.5 24 32-55 110-133 (172)
45 PRK12309 transaldolase/EF-hand 83.2 0.83 1.8E-05 35.1 1.9 37 15-51 305-357 (391)
46 smart00027 EH Eps15 homology d 83.2 0.94 2E-05 27.1 1.8 28 32-59 48-75 (96)
47 KOG2643|consensus 82.1 0.97 2.1E-05 36.6 2.0 39 16-54 216-259 (489)
48 cd05030 calgranulins Calgranul 82.0 0.93 2E-05 27.2 1.5 25 32-56 12-38 (88)
49 KOG0044|consensus 78.4 1.3 2.8E-05 31.3 1.4 27 32-58 151-177 (193)
50 cd05023 S-100A11 S-100A11: S-1 76.0 1.8 3.8E-05 26.5 1.4 25 33-57 14-40 (89)
51 cd05027 S-100B S-100B: S-100B 74.8 2.4 5.2E-05 25.8 1.8 25 32-56 55-79 (88)
52 KOG0038|consensus 69.7 4.8 0.0001 29.1 2.6 39 17-55 92-135 (189)
53 cd00213 S-100 S-100: S-100 dom 69.4 3.9 8.5E-05 23.7 1.8 24 33-56 56-79 (88)
54 KOG0037|consensus 67.5 3.9 8.5E-05 30.1 1.8 24 33-56 129-152 (221)
55 PF12763 EF-hand_4: Cytoskelet 60.8 5.6 0.00012 25.3 1.4 20 37-56 52-71 (104)
56 PLN02964 phosphatidylserine de 58.9 5 0.00011 33.1 1.1 26 31-56 182-207 (644)
57 PF10591 SPARC_Ca_bdg: Secrete 58.0 2.9 6.4E-05 26.6 -0.3 41 11-51 37-77 (113)
58 PF05042 Caleosin: Caleosin re 57.5 5 0.00011 28.5 0.8 14 37-50 16-29 (174)
59 KOG0031|consensus 52.4 9.6 0.00021 27.3 1.6 24 32-55 105-128 (171)
60 PF09851 SHOCT: Short C-termin 49.5 15 0.00032 18.8 1.6 14 42-55 14-27 (31)
61 PF15603 Imm45: Immunity prote 49.2 17 0.00036 22.8 2.1 33 28-60 38-71 (82)
62 PF15017 AF1Q: Drug resistance 48.0 11 0.00024 24.1 1.2 17 36-52 67-83 (87)
63 KOG4251|consensus 47.7 13 0.00028 29.0 1.7 21 32-52 144-164 (362)
64 KOG4251|consensus 45.9 11 0.00023 29.5 1.0 18 34-51 107-124 (362)
65 KOG0377|consensus 45.6 12 0.00027 31.1 1.4 23 34-56 553-575 (631)
66 cd05024 S-100A10 S-100A10: A s 45.0 17 0.00036 23.1 1.7 24 33-57 13-36 (91)
67 KOG0751|consensus 44.3 8.1 0.00018 32.5 0.2 38 20-57 171-208 (694)
68 KOG4223|consensus 44.0 7.6 0.00017 30.0 0.0 33 25-57 197-229 (325)
69 PHA02152 hypothetical protein 43.8 14 0.0003 24.2 1.2 14 40-53 22-35 (96)
70 KOG0041|consensus 42.5 15 0.00032 27.6 1.3 25 32-56 103-127 (244)
71 PF09693 Phage_XkdX: Phage unc 41.5 15 0.00032 19.8 0.9 12 42-53 24-35 (40)
72 PF03986 Autophagy_N: Autophag 40.6 14 0.00031 25.1 1.0 12 42-53 25-36 (145)
73 PF09336 Vps4_C: Vps4 C termin 37.6 22 0.00049 20.7 1.3 15 44-58 29-43 (62)
74 PF13724 DNA_binding_2: DNA-bi 37.3 16 0.00034 21.3 0.6 11 22-32 17-27 (49)
75 PF10552 ORF6C: ORF6C domain; 37.2 20 0.00044 22.6 1.2 28 35-62 80-107 (116)
76 KOG4065|consensus 34.6 23 0.0005 24.7 1.2 19 35-53 124-142 (144)
77 PF06014 DUF910: Bacterial pro 33.4 26 0.00057 21.2 1.2 38 11-55 6-53 (62)
78 KOG2463|consensus 32.5 27 0.00059 27.7 1.4 18 37-54 176-193 (376)
79 KOG0040|consensus 32.0 19 0.00042 34.0 0.6 28 33-60 2258-2285(2399)
80 PF02417 Chromate_transp: Chro 29.6 31 0.00068 22.7 1.2 21 35-55 28-48 (169)
81 KOG0028|consensus 29.5 34 0.00073 24.6 1.4 25 32-56 37-61 (172)
82 PF04081 DNA_pol_delta_4: DNA 29.1 30 0.00065 23.5 1.0 16 9-24 61-76 (124)
83 COG5663 Uncharacterized conser 28.8 42 0.00091 24.5 1.8 45 8-58 20-64 (194)
84 PF03645 Tctex-1: Tctex-1 fami 28.3 19 0.00041 21.6 -0.0 13 36-48 72-84 (101)
85 PF14788 EF-hand_10: EF hand; 28.2 26 0.00056 20.4 0.5 26 27-52 20-45 (51)
86 PF12923 RRP7: Ribosomal RNA-p 26.6 29 0.00063 22.6 0.6 35 12-46 16-54 (131)
87 KOG0377|consensus 26.2 37 0.0008 28.4 1.3 55 2-56 539-615 (631)
88 PF10256 Erf4: Golgin subfamil 26.0 52 0.0011 20.4 1.6 18 40-57 25-42 (118)
89 PF00447 HSF_DNA-bind: HSF-typ 25.9 28 0.0006 21.2 0.4 31 23-53 4-39 (103)
90 PF08726 EFhand_Ca_insen: Ca2+ 25.8 21 0.00045 21.6 -0.2 22 32-54 10-31 (69)
91 COG2059 ChrA Chromate transpor 25.6 32 0.0007 24.3 0.7 23 35-57 33-55 (195)
92 PF00404 Dockerin_1: Dockerin 25.1 47 0.001 16.1 1.1 14 38-51 1-14 (21)
93 TIGR01669 phage_XkdX phage unc 25.0 43 0.00094 18.6 1.0 13 42-54 29-41 (45)
94 PF13331 DUF4093: Domain of un 24.5 39 0.00084 21.0 0.9 11 45-55 77-87 (87)
95 PF09953 DUF2187: Uncharacteri 23.4 34 0.00073 20.5 0.4 25 25-49 29-53 (57)
96 smart00415 HSF heat shock fact 22.5 59 0.0013 20.1 1.4 31 23-53 7-42 (105)
97 PF06902 Fer4_19: Divergent 4F 21.6 51 0.0011 19.3 1.0 17 33-49 25-41 (64)
98 PHA02754 hypothetical protein; 21.3 51 0.0011 20.4 0.9 15 44-58 10-24 (67)
99 COG2306 Predicted RNA-binding 21.2 60 0.0013 23.5 1.4 15 41-55 133-147 (183)
100 PF10747 DUF2522: Protein of u 20.6 1.1E+02 0.0024 21.0 2.5 38 5-47 98-137 (142)
101 PF06226 DUF1007: Protein of u 20.3 29 0.00063 24.0 -0.3 28 26-53 48-75 (212)
No 1
>KOG2243|consensus
Probab=99.94 E-value=4.2e-28 Score=207.45 Aligned_cols=62 Identities=61% Similarity=0.898 Sum_probs=61.2
Q ss_pred CcccccccchhHHHHHHHHHHHHhhccccCCCccccccCCCCCcccchhHHHHHHHhhhcCC
Q psy8741 1 MVDTLVESAANVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQKSYTP 62 (62)
Q Consensus 1 mVd~LvEs~snve~ilkffdmflKLkdltsS~~F~e~d~~~~G~Is~keF~kaMe~qk~ys~ 62 (62)
||||||||+.|||||||||||||||||||||+.|+|||||++|+||++|||||||.+|+||+
T Consensus 4030 mvd~lvess~nvemilkffdmflklkdltssdtfkeydpdgkgiiskkdf~kame~~k~ytq 4091 (5019)
T KOG2243|consen 4030 MVDMLVESSNNVEMILKFFDMFLKLKDLTSSDTFKEYDPDGKGIISKKDFHKAMEGHKHYTQ 4091 (5019)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHhhccccccchhcCCCCCccccHHHHHHHHhccccchh
Confidence 89999999999999999999999999999999999999999999999999999999999986
No 2
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.84 E-value=6.7e-06 Score=42.27 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=22.8
Q ss_pred CccccccCCCCCcccchhHHHHHHH
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
.+|+.||.|++|-|+..||...|..
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4799999999999999999999864
No 3
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.49 E-value=4.4e-05 Score=38.44 Aligned_cols=23 Identities=13% Similarity=0.436 Sum_probs=20.9
Q ss_pred ccccccCCCCCcccchhHHHHHH
Q psy8741 33 SFMEIDINNEGWVYPKDFKEKME 55 (62)
Q Consensus 33 ~F~e~d~~~~G~Is~keF~kaMe 55 (62)
+|+.||.|++|.|+..||+.+|.
T Consensus 5 ~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 5 AFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHH
Confidence 68999999999999999999987
No 4
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.32 E-value=8.6e-05 Score=36.89 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=19.9
Q ss_pred ccccccCCCCCcccchhHHHHH
Q psy8741 33 SFMEIDINNEGWVYPKDFKEKM 54 (62)
Q Consensus 33 ~F~e~d~~~~G~Is~keF~kaM 54 (62)
+|+.+|.|++|.||+.||++.|
T Consensus 4 ~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 4 AFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHHC
Confidence 6899999999999999999754
No 5
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.94 E-value=0.00039 Score=38.45 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=18.1
Q ss_pred ccccccCCCCCcccchhHHHHH
Q psy8741 33 SFMEIDINNEGWVYPKDFKEKM 54 (62)
Q Consensus 33 ~F~e~d~~~~G~Is~keF~kaM 54 (62)
.|+.+|+|++|.|+..||..+|
T Consensus 45 ~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 45 IFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHhCCCCcCCCcHHHHhccC
Confidence 3778888888888888888876
No 6
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.92 E-value=0.00045 Score=38.24 Aligned_cols=27 Identities=11% Similarity=0.485 Sum_probs=24.2
Q ss_pred CccccccCCCCCcccchhHHHHHHHhh
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQQK 58 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~qk 58 (62)
.+|+.+|.|++|.|++.||++++....
T Consensus 4 ~~F~~~D~d~~G~i~~~el~~~~~~~~ 30 (66)
T PF13499_consen 4 EAFKKFDKDGDGYISKEELRRALKHLG 30 (66)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 369999999999999999999998754
No 7
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.75 E-value=0.0009 Score=29.65 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.8
Q ss_pred ccccccCCCCCcccchhHHHHHHH
Q psy8741 33 SFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 33 ~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
.|+.+|+|++|.|+..+|...+..
T Consensus 5 ~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 5 AFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHCCCCCCcEeHHHHHHHHHh
Confidence 588999999999999999998865
No 8
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=96.35 E-value=0.0022 Score=34.61 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=23.1
Q ss_pred CCccccccCCCCCcccchhHHHHHHH
Q psy8741 31 SASFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 31 S~~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
...|..+|+|++|.|+..||...|..
T Consensus 28 ~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 28 DRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 35688999999999999999999875
No 9
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.32 E-value=0.0031 Score=31.88 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=22.4
Q ss_pred ccccccCCCCCcccchhHHHHHHHh
Q psy8741 33 SFMEIDINNEGWVYPKDFKEKMEQQ 57 (62)
Q Consensus 33 ~F~e~d~~~~G~Is~keF~kaMe~q 57 (62)
.|..+|++++|.|+..||..+++..
T Consensus 5 ~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 5 AFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 5888999999999999999999865
No 10
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.15 E-value=0.0031 Score=34.20 Aligned_cols=26 Identities=12% Similarity=0.293 Sum_probs=22.7
Q ss_pred CccccccCCCCCcccchhHHHHHHHh
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQQ 57 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~q 57 (62)
..|+.+|+|++|.|+..|+.+++...
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~ 28 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKS 28 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHc
Confidence 46889999999999999999998654
No 11
>KOG0027|consensus
Probab=96.04 E-value=0.003 Score=40.61 Aligned_cols=26 Identities=15% Similarity=0.457 Sum_probs=23.6
Q ss_pred CCccccccCCCCCcccchhHHHHHHH
Q psy8741 31 SASFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 31 S~~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
-++|+.||.|++|.||..|+++.|..
T Consensus 88 ~eaF~~fD~d~~G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 88 KEAFRVFDKDGDGFISASELKKVLTS 113 (151)
T ss_pred HHHHHHHccCCCCcCcHHHHHHHHHH
Confidence 46899999999999999999999864
No 12
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.08 E-value=0.011 Score=35.64 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.1
Q ss_pred CccccccCCCCCcccchhHHHHHHHh
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQQ 57 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~q 57 (62)
.+|+.+|.|++|.|+..|+.++|...
T Consensus 14 ~~F~~~D~d~~G~Is~~el~~~l~~~ 39 (96)
T smart00027 14 QIFRSLDKNQDGTVTGAQAKPILLKS 39 (96)
T ss_pred HHHHHhCCCCCCeEeHHHHHHHHHHc
Confidence 46888999999999999999998763
No 13
>PTZ00184 calmodulin; Provisional
Probab=94.89 E-value=0.015 Score=34.95 Aligned_cols=26 Identities=15% Similarity=0.437 Sum_probs=23.3
Q ss_pred CCccccccCCCCCcccchhHHHHHHH
Q psy8741 31 SASFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 31 S~~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
..+|+.||.|++|.|++.||.+++..
T Consensus 87 ~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 87 KEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 46799999999999999999998865
No 14
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=94.69 E-value=0.015 Score=35.55 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=22.9
Q ss_pred Ccccccc-CCCCC-cccchhHHHHHHH
Q psy8741 32 ASFMEID-INNEG-WVYPKDFKEKMEQ 56 (62)
Q Consensus 32 ~~F~e~d-~~~~G-~Is~keF~kaMe~ 56 (62)
++|+.|| .|++| .|++.|++..|..
T Consensus 12 ~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 12 DVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 5799998 89999 7999999999987
No 15
>KOG0034|consensus
Probab=94.51 E-value=0.022 Score=39.83 Aligned_cols=24 Identities=17% Similarity=0.528 Sum_probs=22.2
Q ss_pred ccccccCCCCCcccchhHHHHHHH
Q psy8741 33 SFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 33 ~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
||+-||.|++|.|+|.|+...++.
T Consensus 109 aF~vYD~~~~G~I~reel~~iv~~ 132 (187)
T KOG0034|consen 109 AFRVYDLDGDGFISREELKQILRM 132 (187)
T ss_pred HHHHhcCCCCCcCcHHHHHHHHHH
Confidence 799999999999999999998864
No 16
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=94.38 E-value=0.019 Score=35.52 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=20.5
Q ss_pred CccccccC-CCCCcccchhHHHHHHH
Q psy8741 32 ASFMEIDI-NNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 32 ~~F~e~d~-~~~G~Is~keF~kaMe~ 56 (62)
.+|+.||. +++|.|+..|++..|.+
T Consensus 12 ~~F~~fd~~~~~g~i~~~ELk~ll~~ 37 (89)
T cd05022 12 SNFHKASVKGGKESLTASEFQELLTQ 37 (89)
T ss_pred HHHHHHhCCCCCCeECHHHHHHHHHH
Confidence 46888888 88888888888888876
No 17
>KOG0034|consensus
Probab=94.21 E-value=0.025 Score=39.49 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=24.2
Q ss_pred CccccccCCCCCcccchhHHHHHHHh
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQQ 57 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~q 57 (62)
..|.|+|.|+||.||-.||.++++++
T Consensus 151 ~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 151 KTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 46899999999999999999999987
No 18
>PTZ00183 centrin; Provisional
Probab=94.08 E-value=0.031 Score=34.25 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=20.4
Q ss_pred ccccccCCCCCcccchhHHHHHHH
Q psy8741 33 SFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 33 ~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
.|..+|++++|.|+..||..++..
T Consensus 22 ~F~~~D~~~~G~i~~~e~~~~l~~ 45 (158)
T PTZ00183 22 AFDLFDTDGSGTIDPKELKVAMRS 45 (158)
T ss_pred HHHHhCCCCCCcccHHHHHHHHHH
Confidence 467779999999999999988874
No 19
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=94.05 E-value=0.028 Score=32.89 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.7
Q ss_pred CccccccC--CCCCcccchhHHHHHHH
Q psy8741 32 ASFMEIDI--NNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 32 ~~F~e~d~--~~~G~Is~keF~kaMe~ 56 (62)
.+|+.||. |++|.|+..+|..++..
T Consensus 12 ~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 12 DVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 47999999 89999999999999864
No 20
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=93.77 E-value=0.031 Score=34.05 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=22.4
Q ss_pred Ccccccc-CCCCC-cccchhHHHHHHHh
Q psy8741 32 ASFMEID-INNEG-WVYPKDFKEKMEQQ 57 (62)
Q Consensus 32 ~~F~e~d-~~~~G-~Is~keF~kaMe~q 57 (62)
.+|+.|| .|++| -||+.|++..|..+
T Consensus 14 ~~F~~~dd~dgdg~~Is~~EL~~ll~~~ 41 (93)
T cd05026 14 RIFHNYSGKEGDRYKLSKGELKELLQRE 41 (93)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHH
Confidence 4689999 89999 59999999999763
No 21
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=93.71 E-value=0.031 Score=33.36 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=22.3
Q ss_pred Ccccccc-CCCCC-cccchhHHHHHHH
Q psy8741 32 ASFMEID-INNEG-WVYPKDFKEKMEQ 56 (62)
Q Consensus 32 ~~F~e~d-~~~~G-~Is~keF~kaMe~ 56 (62)
++|+.|| .|++| .|++.|+..+|..
T Consensus 13 ~~F~~fDd~dg~G~~Is~~El~~~l~~ 39 (92)
T cd05025 13 NVFHAHSGKEGDKYKLSKKELKDLLQT 39 (92)
T ss_pred HHHHHHhcccCCCCeECHHHHHHHHHH
Confidence 4799997 99999 5999999999975
No 22
>KOG0044|consensus
Probab=93.61 E-value=0.048 Score=38.51 Aligned_cols=26 Identities=12% Similarity=0.349 Sum_probs=22.7
Q ss_pred CccccccCCCCCcccchhHHHHHHHh
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQQ 57 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~q 57 (62)
=+|+-||.|++|.|++.|+-+.+.+.
T Consensus 104 w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 104 WAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred hhheeecCCCCceEcHHHHHHHHHHH
Confidence 35999999999999999999888764
No 23
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=93.40 E-value=0.036 Score=33.27 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.0
Q ss_pred CccccccC-CC-CCcccchhHHHHHHH
Q psy8741 32 ASFMEIDI-NN-EGWVYPKDFKEKMEQ 56 (62)
Q Consensus 32 ~~F~e~d~-~~-~G~Is~keF~kaMe~ 56 (62)
.+|+.||. |+ +|.|+..|+..+|.+
T Consensus 12 ~~F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 12 LTFHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHhccCCCCCeECHHHHHHHHHH
Confidence 47999996 97 699999999999875
No 24
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=93.19 E-value=0.046 Score=35.44 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.0
Q ss_pred CccccccCCCCCcccchhHHHH
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEK 53 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~ka 53 (62)
-+|..+|.|+||.||+.|....
T Consensus 52 w~F~~lD~d~DG~Ls~~EL~~~ 73 (116)
T cd00252 52 WMFNQLDGNYDGKLSHHELAPI 73 (116)
T ss_pred HHHHHHCCCCCCcCCHHHHHHH
Confidence 4688999999999999998865
No 25
>PTZ00184 calmodulin; Provisional
Probab=92.63 E-value=0.075 Score=31.93 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=18.5
Q ss_pred ccccccCCCCCcccchhHHHHHHH
Q psy8741 33 SFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 33 ~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
.|+.+|+|++|.|+..||..++..
T Consensus 16 ~F~~~D~~~~G~i~~~e~~~~l~~ 39 (149)
T PTZ00184 16 AFSLFDKDGDGTITTKELGTVMRS 39 (149)
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHH
Confidence 455568888899999888887754
No 26
>KOG0027|consensus
Probab=92.33 E-value=0.072 Score=34.17 Aligned_cols=27 Identities=11% Similarity=0.243 Sum_probs=22.8
Q ss_pred CccccccCCCCCcccchhHHHHHHHhh
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQQK 58 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~qk 58 (62)
.+|+.+|.|++|.|+.+++..+|++--
T Consensus 12 ~~F~~fD~d~~G~i~~~el~~~lr~lg 38 (151)
T KOG0027|consen 12 EAFQLFDKDGDGKISVEELGAVLRSLG 38 (151)
T ss_pred HHHHHHCCCCCCcccHHHHHHHHHHcC
Confidence 578889999999999999999887643
No 27
>PTZ00183 centrin; Provisional
Probab=92.00 E-value=0.099 Score=32.03 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.5
Q ss_pred CccccccCCCCCcccchhHHHHHHHh
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQQ 57 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~q 57 (62)
..|+.+|.|++|.|+..||..++...
T Consensus 94 ~~F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 94 KAFRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 45999999999999999999888753
No 28
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=90.53 E-value=0.19 Score=31.07 Aligned_cols=25 Identities=16% Similarity=0.326 Sum_probs=22.0
Q ss_pred CccccccCCCCCcccchhHHHHHHH
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
..+++.|.|+||.|+-.||...|..
T Consensus 51 ~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 51 EKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4578899999999999999988864
No 29
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=90.15 E-value=0.16 Score=35.15 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=22.9
Q ss_pred CccccccCCCCCcccchhHHHHHHH
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
++|+-+|+|++|.|++.|+...|++
T Consensus 24 eaF~l~D~d~~G~I~~~el~~ilr~ 48 (160)
T COG5126 24 EAFQLFDRDSDGLIDRNELGKILRS 48 (160)
T ss_pred HHHHHhCcCCCCCCcHHHHHHHHHH
Confidence 5789999999999999999999974
No 30
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=90.03 E-value=0.23 Score=29.90 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=23.1
Q ss_pred CCccccccCCCCCcccchhHHHHHHHh
Q psy8741 31 SASFMEIDINNEGWVYPKDFKEKMEQQ 57 (62)
Q Consensus 31 S~~F~e~d~~~~G~Is~keF~kaMe~q 57 (62)
...|+++|+|++|-|+.+||...|...
T Consensus 54 ~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 54 DKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 346889999999999999999988653
No 31
>KOG2643|consensus
Probab=89.13 E-value=0.26 Score=39.80 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=27.9
Q ss_pred hhccccCCCccccccCCCCCcccchhHHHHHHH
Q psy8741 24 KLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 24 KLkdltsS~~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
+|.|=+-.-.|.-+|-|+||.+|++||.-.|.+
T Consensus 421 eLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 421 ELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred ccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 455556677899999999999999999988875
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=88.54 E-value=0.33 Score=29.05 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.3
Q ss_pred CccccccCCCCCcccchhHHHHHHHh
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQQ 57 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~q 57 (62)
..++++|+|++|-|+..||...|...
T Consensus 55 ~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 55 KIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46788999999999999999888653
No 33
>PF14658 EF-hand_9: EF-hand domain
Probab=88.53 E-value=0.32 Score=29.57 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.3
Q ss_pred cccccCCCC-CcccchhHHHHHHH
Q psy8741 34 FMEIDINNE-GWVYPKDFKEKMEQ 56 (62)
Q Consensus 34 F~e~d~~~~-G~Is~keF~kaMe~ 56 (62)
-.++||++. |-|+..+|+.+|..
T Consensus 41 ~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 41 INELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHhCCCCCCceEeHHHHHHHHHH
Confidence 357899999 99999999999974
No 34
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=88.20 E-value=0.26 Score=31.96 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=20.1
Q ss_pred CccccccCCCCCcccchhHHHHH
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKM 54 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaM 54 (62)
.-|...|.|+||-||..||....
T Consensus 84 ~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 84 PFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHH
Confidence 35778899999999999998876
No 35
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=87.90 E-value=0.4 Score=29.13 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=21.9
Q ss_pred CccccccCCCCCcccchhHHHHHHH
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
..+++.|.|++|-|+-.||...|..
T Consensus 57 ~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 57 KIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 3588899999999999999998865
No 36
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=87.56 E-value=0.4 Score=25.73 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.5
Q ss_pred CCccccccCCCCCcccchhHHHHHH
Q psy8741 31 SASFMEIDINNEGWVYPKDFKEKME 55 (62)
Q Consensus 31 S~~F~e~d~~~~G~Is~keF~kaMe 55 (62)
...|+.+|+|++|-|+.+||...|.
T Consensus 36 ~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 36 AQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred HHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 3458889999999999999998875
No 37
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=87.16 E-value=0.46 Score=29.05 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=21.6
Q ss_pred CccccccCCCCCcccchhHHHHHHH
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
..+++.|.|+||-|+-.||-..|..
T Consensus 56 ~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 56 RMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3588999999999999999987754
No 38
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=86.70 E-value=0.36 Score=29.44 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.4
Q ss_pred ccccccC-CC-CCcccchhHHHHHHH
Q psy8741 33 SFMEIDI-NN-EGWVYPKDFKEKMEQ 56 (62)
Q Consensus 33 ~F~e~d~-~~-~G~Is~keF~kaMe~ 56 (62)
.|.-||- |+ +|.|+..||.+.|..
T Consensus 15 ~F~~y~~~~~~~g~Is~~EL~~~l~~ 40 (88)
T cd05029 15 IFHKYSGREGDKNTLSKKELKELIQK 40 (88)
T ss_pred HHHHHHccCCCCCEECHHHHHHHHHH
Confidence 4778887 67 999999999999963
No 39
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=86.23 E-value=0.54 Score=27.94 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.9
Q ss_pred CccccccCCCCCcccchhHHHHHHHh
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQQ 57 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~q 57 (62)
..|+++|+|++|-|+-.+|...|...
T Consensus 56 ~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 56 KIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 56888999999999999999888754
No 40
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=84.97 E-value=0.37 Score=29.34 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=21.7
Q ss_pred CCCccccccCCCCCcccchhHHHHHH
Q psy8741 30 SSASFMEIDINNEGWVYPKDFKEKME 55 (62)
Q Consensus 30 sS~~F~e~d~~~~G~Is~keF~kaMe 55 (62)
-...+++.|.|++|-|+..||...|.
T Consensus 53 v~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 53 IAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 34458899999999999999987764
No 41
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=84.36 E-value=0.52 Score=32.61 Aligned_cols=23 Identities=13% Similarity=0.446 Sum_probs=19.2
Q ss_pred CccccccCCCCCcccchhHHHHH
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKM 54 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaM 54 (62)
.||+.||.|++|.||..+....+
T Consensus 96 ~aF~~fD~d~dG~Is~~eL~~vl 118 (160)
T COG5126 96 EAFKLFDKDHDGYISIGELRRVL 118 (160)
T ss_pred HHHHHhCCCCCceecHHHHHHHH
Confidence 47999999999999988887665
No 42
>PLN02964 phosphatidylserine decarboxylase
Probab=83.92 E-value=0.53 Score=38.56 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.9
Q ss_pred CCccccccCCCCCcccchhHHHHHHHh
Q psy8741 31 SASFMEIDINNEGWVYPKDFKEKMEQQ 57 (62)
Q Consensus 31 S~~F~e~d~~~~G~Is~keF~kaMe~q 57 (62)
..+|+.+|.|++|.|+..||...|..+
T Consensus 218 ~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 218 EELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 358999999999999999999998874
No 43
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=83.79 E-value=0.63 Score=35.73 Aligned_cols=23 Identities=22% Similarity=0.609 Sum_probs=12.1
Q ss_pred ccccccCCCCCcccchhHHHHHH
Q psy8741 33 SFMEIDINNEGWVYPKDFKEKME 55 (62)
Q Consensus 33 ~F~e~d~~~~G~Is~keF~kaMe 55 (62)
.|..+|.|+||-|+..||+..+.
T Consensus 362 ~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 362 VFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred HHHHhCCCCCCCCcHHHHHHHHH
Confidence 45555555555555555555443
No 44
>KOG0028|consensus
Probab=83.65 E-value=0.69 Score=33.03 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.4
Q ss_pred CccccccCCCCCcccchhHHHHHH
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKME 55 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe 55 (62)
-+|+++|-|++|.||+++|...|.
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvak 133 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAK 133 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHH
Confidence 479999999999999999988764
No 45
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=83.23 E-value=0.83 Score=35.09 Aligned_cols=37 Identities=16% Similarity=0.367 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhccccC----------------CCccccccCCCCCcccchhHH
Q psy8741 15 ILKYFDMFLKLKDLTS----------------SASFMEIDINNEGWVYPKDFK 51 (62)
Q Consensus 15 ilkffdmflKLkdlts----------------S~~F~e~d~~~~G~Is~keF~ 51 (62)
|=+|.+.--||..+.. -.+|+-||.|++|.|++.||.
T Consensus 305 i~~F~~d~~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 305 IKGFSKALETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 4556666666555433 357899999999999999996
No 46
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=83.23 E-value=0.94 Score=27.08 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=23.9
Q ss_pred CccccccCCCCCcccchhHHHHHHHhhh
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQQKS 59 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~qk~ 59 (62)
..|+.+|++++|-|+..||..+|.....
T Consensus 48 ~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 48 KIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 5678899999999999999999876543
No 47
>KOG2643|consensus
Probab=82.08 E-value=0.97 Score=36.58 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=30.7
Q ss_pred HHHHHHHHhhccccCCC-----ccccccCCCCCcccchhHHHHH
Q psy8741 16 LKYFDMFLKLKDLTSSA-----SFMEIDINNEGWVYPKDFKEKM 54 (62)
Q Consensus 16 lkffdmflKLkdltsS~-----~F~e~d~~~~G~Is~keF~kaM 54 (62)
++|-|-.+=+-=|+.|+ ||+-+|.|++|-|.+.||.+.+
T Consensus 216 IsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~ 259 (489)
T KOG2643|consen 216 ISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQ 259 (489)
T ss_pred eeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHH
Confidence 45556555555667776 7999999999999999998765
No 48
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=82.02 E-value=0.93 Score=27.22 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=20.8
Q ss_pred CccccccCC--CCCcccchhHHHHHHH
Q psy8741 32 ASFMEIDIN--NEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 32 ~~F~e~d~~--~~G~Is~keF~kaMe~ 56 (62)
.-|++|+.+ ++|.|++.||...|..
T Consensus 12 ~~f~~y~~~~~~~~~Is~~El~~ll~~ 38 (88)
T cd05030 12 NVFHQYSVRKGHPDTLYKKEFKQLVEK 38 (88)
T ss_pred HHHHHHhccCCCcccCCHHHHHHHHHH
Confidence 358899966 5899999999999963
No 49
>KOG0044|consensus
Probab=78.37 E-value=1.3 Score=31.33 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.0
Q ss_pred CccccccCCCCCcccchhHHHHHHHhh
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQQK 58 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~qk 58 (62)
.-|+..|.|.||.||-+||..+..+.+
T Consensus 151 ~if~k~D~n~Dg~lT~eef~~~~~~d~ 177 (193)
T KOG0044|consen 151 KIFSKMDKNKDGKLTLEEFIEGCKADP 177 (193)
T ss_pred HHHHHcCCCCCCcccHHHHHHHhhhCH
Confidence 358889999999999999998876643
No 50
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=75.98 E-value=1.8 Score=26.48 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=20.3
Q ss_pred cccc-ccCCCCC-cccchhHHHHHHHh
Q psy8741 33 SFME-IDINNEG-WVYPKDFKEKMEQQ 57 (62)
Q Consensus 33 ~F~e-~d~~~~G-~Is~keF~kaMe~q 57 (62)
+|+. .|.+++| -||+.||+..|...
T Consensus 14 ~F~~y~~~dg~~~~Ls~~Elk~ll~~e 40 (89)
T cd05023 14 VFQKYAGKDGDSYQLSKTEFLSFMNTE 40 (89)
T ss_pred HHHHHhccCCCcCeECHHHHHHHHHHh
Confidence 5667 4577876 99999999999875
No 51
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=74.85 E-value=2.4 Score=25.77 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=21.3
Q ss_pred CccccccCCCCCcccchhHHHHHHH
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
..+++.|+|++|-|+-.||...|..
T Consensus 55 ~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 55 KVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4577889999999999999887754
No 52
>KOG0038|consensus
Probab=69.74 E-value=4.8 Score=29.09 Aligned_cols=39 Identities=18% Similarity=0.473 Sum_probs=30.6
Q ss_pred HHHHHHHhhcc-----ccCCCccccccCCCCCcccchhHHHHHH
Q psy8741 17 KYFDMFLKLKD-----LTSSASFMEIDINNEGWVYPKDFKEKME 55 (62)
Q Consensus 17 kffdmflKLkd-----ltsS~~F~e~d~~~~G~Is~keF~kaMe 55 (62)
.|.|||--++. |-.--||+-||-|+|+.|-+.|..+-+.
T Consensus 92 dFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~ 135 (189)
T KOG0038|consen 92 DFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLT 135 (189)
T ss_pred HHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHH
Confidence 46778776654 4455699999999999999999877654
No 53
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=69.37 E-value=3.9 Score=23.67 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.7
Q ss_pred ccccccCCCCCcccchhHHHHHHH
Q psy8741 33 SFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 33 ~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
.+.++|.|++|-|+-.+|...|..
T Consensus 56 i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 56 IMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHhccCCCCcCcHHHHHHHHHH
Confidence 577889999999999999887764
No 54
>KOG0037|consensus
Probab=67.49 E-value=3.9 Score=30.08 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=21.6
Q ss_pred ccccccCCCCCcccchhHHHHHHH
Q psy8741 33 SFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 33 ~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
-|+.||.|+-|-|++.|++.|..+
T Consensus 129 vF~~~D~D~SG~I~~sEL~~Al~~ 152 (221)
T KOG0037|consen 129 VFRTYDRDRSGTIDSSELRQALTQ 152 (221)
T ss_pred HHHhcccCCCCcccHHHHHHHHHH
Confidence 488899999999999999999864
No 55
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=60.83 E-value=5.6 Score=25.30 Aligned_cols=20 Identities=30% Similarity=0.425 Sum_probs=17.0
Q ss_pred ccCCCCCcccchhHHHHHHH
Q psy8741 37 IDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 37 ~d~~~~G~Is~keF~kaMe~ 56 (62)
-|.|++|.++..||--||.-
T Consensus 52 aD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 52 ADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp H-SSSSSEEEHHHHHHHHHH
T ss_pred hcCCCCCcCCHHHHHHHHHH
Confidence 46999999999999999863
No 56
>PLN02964 phosphatidylserine decarboxylase
Probab=58.86 E-value=5 Score=33.05 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=22.8
Q ss_pred CCccccccCCCCCcccchhHHHHHHH
Q psy8741 31 SASFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 31 S~~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
...|.++|.|++|.|+.+||...|..
T Consensus 182 ~~mf~~~D~DgdG~IdfdEFl~lL~~ 207 (644)
T PLN02964 182 RRILAIVDYDEDGQLSFSEFSDLIKA 207 (644)
T ss_pred HHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 35688999999999999999998874
No 57
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=57.95 E-value=2.9 Score=26.63 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHhhccccCCCccccccCCCCCcccchhHH
Q psy8741 11 NVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVYPKDFK 51 (62)
Q Consensus 11 nve~ilkffdmflKLkdltsS~~F~e~d~~~~G~Is~keF~ 51 (62)
.+++..+.....-..+.-+..-.|...|.|+||.++++|..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~W~F~~LD~n~d~~L~~~El~ 77 (113)
T PF10591_consen 37 YIELLKRDESSSYSECKRVVHWKFCQLDRNKDGVLDRSELK 77 (113)
T ss_dssp -HHHHHHHHHHTGGGGHHHHHHHHHHH--T-SSEE-TTTTG
T ss_pred cccccccccccchhhhhhhhhhhHhhhcCCCCCccCHHHHH
Confidence 34445555555555555555556888999999999998853
No 58
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=57.51 E-value=5 Score=28.52 Aligned_cols=14 Identities=36% Similarity=0.745 Sum_probs=12.3
Q ss_pred ccCCCCCcccchhH
Q psy8741 37 IDINNEGWVYPKDF 50 (62)
Q Consensus 37 ~d~~~~G~Is~keF 50 (62)
||.|+||+|.|-|=
T Consensus 16 FDrd~DGiI~P~dT 29 (174)
T PF05042_consen 16 FDRDKDGIIYPWDT 29 (174)
T ss_pred eCCCCCeeECHHHH
Confidence 79999999999763
No 59
>KOG0031|consensus
Probab=52.45 E-value=9.6 Score=27.29 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.1
Q ss_pred CccccccCCCCCcccchhHHHHHH
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKME 55 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe 55 (62)
.||+.+|++++|.|-.+.+++..-
T Consensus 105 ~AF~~FD~~~~G~I~~d~lre~Lt 128 (171)
T KOG0031|consen 105 NAFKTFDDEGSGKIDEDYLRELLT 128 (171)
T ss_pred HHHHhcCccCCCccCHHHHHHHHH
Confidence 489999999999999999887654
No 60
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=49.52 E-value=15 Score=18.78 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=11.8
Q ss_pred CCcccchhHHHHHH
Q psy8741 42 EGWVYPKDFKEKME 55 (62)
Q Consensus 42 ~G~Is~keF~kaMe 55 (62)
.|.||..||.++-.
T Consensus 14 ~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 14 KGEISEEEYEQKKA 27 (31)
T ss_pred cCCCCHHHHHHHHH
Confidence 69999999998643
No 61
>PF15603 Imm45: Immunity protein 45
Probab=49.21 E-value=17 Score=22.79 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=25.9
Q ss_pred ccCCCccccccCCCCCc-ccchhHHHHHHHhhhc
Q psy8741 28 LTSSASFMEIDINNEGW-VYPKDFKEKMEQQKSY 60 (62)
Q Consensus 28 ltsS~~F~e~d~~~~G~-Is~keF~kaMe~qk~y 60 (62)
++=-.+=+.|||+.++. |+..|=|+.+++=..|
T Consensus 38 vvy~~si~~We~P~e~~~it~~e~q~II~aI~~~ 71 (82)
T PF15603_consen 38 VVYKDSIKNWEPPHENEPITIAERQKIIEAIEKY 71 (82)
T ss_pred EEEccccccccCCCCCcccCHHHHHHHHHHHHHH
Confidence 33445668899999995 9999999999875543
No 62
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=48.04 E-value=11 Score=24.08 Aligned_cols=17 Identities=35% Similarity=0.812 Sum_probs=12.7
Q ss_pred cccCCCCCcccchhHHH
Q psy8741 36 EIDINNEGWVYPKDFKE 52 (62)
Q Consensus 36 e~d~~~~G~Is~keF~k 52 (62)
+=|.|+.|||+|....+
T Consensus 67 ~~ddD~gGWITPsNIkq 83 (87)
T PF15017_consen 67 EEDDDGGGWITPSNIKQ 83 (87)
T ss_pred cccCCCCccccchhhhh
Confidence 34588999999976543
No 63
>KOG4251|consensus
Probab=47.74 E-value=13 Score=29.04 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=13.2
Q ss_pred CccccccCCCCCcccchhHHH
Q psy8741 32 ASFMEIDINNEGWVYPKDFKE 52 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~k 52 (62)
.-|+..|||+||-||-.||.-
T Consensus 144 thFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 144 THFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred hheeeeCCCCCCceehhhhhh
Confidence 346666667777666666653
No 64
>KOG4251|consensus
Probab=45.91 E-value=11 Score=29.50 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=15.3
Q ss_pred cccccCCCCCcccchhHH
Q psy8741 34 FMEIDINNEGWVYPKDFK 51 (62)
Q Consensus 34 F~e~d~~~~G~Is~keF~ 51 (62)
|...|.|-||-||-+|-|
T Consensus 107 FsKvDVNtDrkisAkEmq 124 (362)
T KOG4251|consen 107 FSKVDVNTDRKISAKEMQ 124 (362)
T ss_pred HhhcccCccccccHHHHH
Confidence 777899999999988864
No 65
>KOG0377|consensus
Probab=45.62 E-value=12 Score=31.07 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=19.8
Q ss_pred cccccCCCCCcccchhHHHHHHH
Q psy8741 34 FMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 34 F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
|+-+|.|+.|.||-+||..+.+-
T Consensus 553 F~~iD~D~SG~isldEF~~a~~l 575 (631)
T KOG0377|consen 553 FNIIDADNSGEISLDEFRTAWKL 575 (631)
T ss_pred HHHhccCCCCceeHHHHHHHHHH
Confidence 56688999999999999988763
No 66
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=45.04 E-value=17 Score=23.10 Aligned_cols=24 Identities=17% Similarity=0.480 Sum_probs=18.5
Q ss_pred ccccccCCCCCcccchhHHHHHHHh
Q psy8741 33 SFMEIDINNEGWVYPKDFKEKMEQQ 57 (62)
Q Consensus 33 ~F~e~d~~~~G~Is~keF~kaMe~q 57 (62)
.|+.|. -.+|-+|++||++-|+.+
T Consensus 13 ~FhkYa-G~~~tLsk~Elk~Ll~~E 36 (91)
T cd05024 13 TFHKFA-GEKNYLNRDDLQKLMEKE 36 (91)
T ss_pred HHHHHc-CCCCcCCHHHHHHHHHHH
Confidence 456666 346799999999999875
No 67
>KOG0751|consensus
Probab=44.30 E-value=8.1 Score=32.45 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=29.2
Q ss_pred HHHHhhccccCCCccccccCCCCCcccchhHHHHHHHh
Q psy8741 20 DMFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQ 57 (62)
Q Consensus 20 dmflKLkdltsS~~F~e~d~~~~G~Is~keF~kaMe~q 57 (62)
-.+.+.-.=-+-++|+++|+.+.|.||.=+||..|-.-
T Consensus 171 Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 171 QFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhh
Confidence 33444443446789999999999999999999988543
No 68
>KOG4223|consensus
Probab=44.04 E-value=7.6 Score=30.04 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=26.4
Q ss_pred hccccCCCccccccCCCCCcccchhHHHHHHHh
Q psy8741 25 LKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQ 57 (62)
Q Consensus 25 LkdltsS~~F~e~d~~~~G~Is~keF~kaMe~q 57 (62)
+++++=-+.-.+.|.|+||-|+-+||..-|.++
T Consensus 197 M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~ 229 (325)
T KOG4223|consen 197 MKDIVIAETLEDIDKNGDGKISLEEFIGDLYSH 229 (325)
T ss_pred HHHHHHHHHHhhcccCCCCceeHHHHHhHHhhc
Confidence 455555566778999999999999999888664
No 69
>PHA02152 hypothetical protein
Probab=43.83 E-value=14 Score=24.24 Aligned_cols=14 Identities=36% Similarity=0.890 Sum_probs=12.2
Q ss_pred CCCCcccchhHHHH
Q psy8741 40 NNEGWVYPKDFKEK 53 (62)
Q Consensus 40 ~~~G~Is~keF~ka 53 (62)
-+-|||||.+.|+|
T Consensus 22 gnhgwisp~~i~~a 35 (96)
T PHA02152 22 GNHGWVSPSNIRYA 35 (96)
T ss_pred cccCccChhHHHHH
Confidence 46799999999987
No 70
>KOG0041|consensus
Probab=42.48 E-value=15 Score=27.63 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.0
Q ss_pred CccccccCCCCCcccchhHHHHHHH
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
.-|+-||.+.||.|+--|...-||-
T Consensus 103 ~~Fk~yDe~rDgfIdl~ELK~mmEK 127 (244)
T KOG0041|consen 103 SMFKQYDEDRDGFIDLMELKRMMEK 127 (244)
T ss_pred HHHHHhcccccccccHHHHHHHHHH
Confidence 3588999999999999999998884
No 71
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=41.54 E-value=15 Score=19.84 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=10.3
Q ss_pred CCcccchhHHHH
Q psy8741 42 EGWVYPKDFKEK 53 (62)
Q Consensus 42 ~G~Is~keF~ka 53 (62)
-||||+.+|++.
T Consensus 24 ~g~IT~eey~eI 35 (40)
T PF09693_consen 24 AGWITKEEYKEI 35 (40)
T ss_pred cCeECHHHHHHh
Confidence 589999999875
No 72
>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.
Probab=40.64 E-value=14 Score=25.07 Aligned_cols=12 Identities=25% Similarity=0.598 Sum_probs=8.1
Q ss_pred CCcccchhHHHH
Q psy8741 42 EGWVYPKDFKEK 53 (62)
Q Consensus 42 ~G~Is~keF~ka 53 (62)
.|.|||.||-.|
T Consensus 25 tG~iTPeEFV~A 36 (145)
T PF03986_consen 25 TGVITPEEFVAA 36 (145)
T ss_dssp HS---HHHHHHH
T ss_pred cceeCHHHHHHh
Confidence 699999999887
No 73
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=37.63 E-value=22 Score=20.65 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=12.6
Q ss_pred cccchhHHHHHHHhh
Q psy8741 44 WVYPKDFKEKMEQQK 58 (62)
Q Consensus 44 ~Is~keF~kaMe~qk 58 (62)
-|+++||..|+...+
T Consensus 29 ~it~~DF~~Al~~~k 43 (62)
T PF09336_consen 29 PITMEDFEEALKKVK 43 (62)
T ss_dssp HBCHHHHHHHHHTCG
T ss_pred CCCHHHHHHHHHHcC
Confidence 489999999998754
No 74
>PF13724 DNA_binding_2: DNA-binding domain
Probab=37.29 E-value=16 Score=21.34 Aligned_cols=11 Identities=45% Similarity=0.797 Sum_probs=9.0
Q ss_pred HHhhccccCCC
Q psy8741 22 FLKLKDLTSSA 32 (62)
Q Consensus 22 flKLkdltsS~ 32 (62)
|-|||||..+-
T Consensus 17 FYKLkDM~k~r 27 (49)
T PF13724_consen 17 FYKLKDMSKPR 27 (49)
T ss_pred HHHHhhcccCC
Confidence 89999998553
No 75
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=37.18 E-value=20 Score=22.61 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=23.5
Q ss_pred ccccCCCCCcccchhHHHHHHHhhhcCC
Q psy8741 35 MEIDINNEGWVYPKDFKEKMEQQKSYTP 62 (62)
Q Consensus 35 ~e~d~~~~G~Is~keF~kaMe~qk~ys~ 62 (62)
++++.+.-..|-+++|.+||+.=+.|.|
T Consensus 80 ~~F~V~sY~~I~~kdfd~A~~~I~~W~p 107 (116)
T PF10552_consen 80 RHFGVPSYKDIPRKDFDEALEFINNWEP 107 (116)
T ss_pred HHhCCchHHhhhHHHHHHHHHHHHHcCC
Confidence 4567788888999999999998887765
No 76
>KOG4065|consensus
Probab=34.56 E-value=23 Score=24.72 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.3
Q ss_pred ccccCCCCCcccchhHHHH
Q psy8741 35 MEIDINNEGWVYPKDFKEK 53 (62)
Q Consensus 35 ~e~d~~~~G~Is~keF~ka 53 (62)
++-|-|+||.|-.-||.|+
T Consensus 124 ~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 124 DDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred cccccCCCceeeHHHHHhh
Confidence 3557899999999999886
No 77
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=33.40 E-value=26 Score=21.17 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHhhccccCCCcccccc----------CCCCCcccchhHHHHHH
Q psy8741 11 NVELILKYFDMFLKLKDLTSSASFMEID----------INNEGWVYPKDFKEKME 55 (62)
Q Consensus 11 nve~ilkffdmflKLkdltsS~~F~e~d----------~~~~G~Is~keF~kaMe 55 (62)
.|+-.||-|..|+-..| +.|| .-.-|+|++++|.+|+-
T Consensus 6 DVqQLLK~fG~~IY~gd-------r~~DielM~~El~~Ly~~~lidk~~y~~A~l 53 (62)
T PF06014_consen 6 DVQQLLKKFGIIIYVGD-------RLWDIELMEIELKELYKSGLIDKKEYLTAKL 53 (62)
T ss_dssp HHHHHHHTTS-----S--------HHHHHHHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred HHHHHHHHCCEEEEeCC-------hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45666666666655444 2333 33569999999999873
No 78
>KOG2463|consensus
Probab=32.47 E-value=27 Score=27.70 Aligned_cols=18 Identities=28% Similarity=0.870 Sum_probs=14.4
Q ss_pred ccCCCCCcccchhHHHHH
Q psy8741 37 IDINNEGWVYPKDFKEKM 54 (62)
Q Consensus 37 ~d~~~~G~Is~keF~kaM 54 (62)
=|.|.||||++..-.++.
T Consensus 176 ed~DdDgwitp~ni~~~~ 193 (376)
T KOG2463|consen 176 EDADDDGWITPSNITEAI 193 (376)
T ss_pred cccccccccccchHHHHH
Confidence 467888999999887664
No 79
>KOG0040|consensus
Probab=32.02 E-value=19 Score=33.97 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=24.3
Q ss_pred ccccccCCCCCcccchhHHHHHHHhhhc
Q psy8741 33 SFMEIDINNEGWVYPKDFKEKMEQQKSY 60 (62)
Q Consensus 33 ~F~e~d~~~~G~Is~keF~kaMe~qk~y 60 (62)
+|+++|-+..||..+++|.--.+++--|
T Consensus 2258 ~fkhFDkek~G~Ldhq~F~sCLrslgY~ 2285 (2399)
T KOG0040|consen 2258 MFKHFDKEKNGRLDHQHFKSCLRSLGYD 2285 (2399)
T ss_pred HHHHhchhhccCCcHHHHHHHHHhcCCC
Confidence 6889999999999999999888876543
No 80
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=29.60 E-value=31 Score=22.74 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=15.8
Q ss_pred ccccCCCCCcccchhHHHHHH
Q psy8741 35 MEIDINNEGWVYPKDFKEKME 55 (62)
Q Consensus 35 ~e~d~~~~G~Is~keF~kaMe 55 (62)
++.=-+..||||.+||....-
T Consensus 28 ~~~~V~~~~wlt~~~f~~~~a 48 (169)
T PF02417_consen 28 QREFVERRGWLTEEEFLEGLA 48 (169)
T ss_pred HHHHhHccCCCCHHHHHHHHH
Confidence 333357789999999997654
No 81
>KOG0028|consensus
Probab=29.47 E-value=34 Score=24.56 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=19.2
Q ss_pred CccccccCCCCCcccchhHHHHHHH
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaMe~ 56 (62)
++|.-+||+++|.|--+|+.-||.+
T Consensus 37 e~f~lfd~~~~g~iD~~EL~vAmra 61 (172)
T KOG0028|consen 37 EAFELFDPDMAGKIDVEELKVAMRA 61 (172)
T ss_pred HHHHhhccCCCCcccHHHHHHHHHH
Confidence 4677778888888888888777764
No 82
>PF04081 DNA_pol_delta_4: DNA polymerase delta, subunit 4 ; InterPro: IPR007218 DNA polymerase is responsible for effective DNA replication. The function of the delta subunit 4 of DNA polymerase is not yet known.; GO: 0006260 DNA replication, 0005634 nucleus
Probab=29.10 E-value=30 Score=23.45 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=12.6
Q ss_pred chhHHHHHHHHHHHHh
Q psy8741 9 AANVELILKYFDMFLK 24 (62)
Q Consensus 9 ~snve~ilkffdmflK 24 (62)
-+.+|.||++|||=.+
T Consensus 61 ~~~~e~~Lr~FDl~~~ 76 (124)
T PF04081_consen 61 LSQHEKILRQFDLSSQ 76 (124)
T ss_pred hhHHHHHHHHhccccc
Confidence 4678999999998543
No 83
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=28.81 E-value=42 Score=24.52 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=36.2
Q ss_pred cchhHHHHHHHHHHHHhhccccCCCccccccCCCCCcccchhHHHHHHHhh
Q psy8741 8 SAANVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQK 58 (62)
Q Consensus 8 s~snve~ilkffdmflKLkdltsS~~F~e~d~~~~G~Is~keF~kaMe~qk 58 (62)
.+--++..=.+|.-+|-++|+| +||.-.-|||.-.||.+-||+-+
T Consensus 20 ~~t~~~~~n~~f~kslse~d~t------~y~lhkil~i~~ee~~k~~e~~e 64 (194)
T COG5663 20 DPTFAPYLNPAFEKSLSEADPT------DYDLHKILNITTEEFWKWMEQTE 64 (194)
T ss_pred CcccchhccHHHHhhhhhcccc------cccHHHHhCccHHHHHHHHHHHH
Confidence 3344455557888888888876 79999999999999999999854
No 84
>PF03645 Tctex-1: Tctex-1 family; InterPro: IPR005334 Tctex-1 is a dynein light chain. Dynein translocates rhodopsin-bearing vesicles along microtubules and it has been shown that Tctex-1 can bind to the cytoplasmic tail of rhodopsin. An efficient vectorial transport system must be required to deliver large numbers of newly synthesized rhodopsin molecules (~107 molecules per day per photoreceptor) to the base of the outer segment of the photoreceptor, Tctex-1 may well play a role in this process. C-terminal rhodopsin mutations responsible for retinitis pigmentosa inhibit the interaction between Tctex-1 and rhodopsin, which may be the molecular basis of retinitis pigmentosa. In the mouse, the chromosomal location and pattern of expression of Tctex-1 make it a candidate for involvement in male sterility [].; PDB: 1YGT_A 3FM7_A 2PG1_E 1XDX_B.
Probab=28.33 E-value=19 Score=21.60 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=9.2
Q ss_pred cccCCCCCcccch
Q psy8741 36 EIDINNEGWVYPK 48 (62)
Q Consensus 36 e~d~~~~G~Is~k 48 (62)
-||++.||+++.+
T Consensus 72 lWD~~~D~~~~~~ 84 (101)
T PF03645_consen 72 LWDPETDGYVSYK 84 (101)
T ss_dssp ECETTT-EEEEEE
T ss_pred eeCCCCCcEEEEE
Confidence 4889999988753
No 85
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=28.18 E-value=26 Score=20.41 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=19.8
Q ss_pred cccCCCccccccCCCCCcccchhHHH
Q psy8741 27 DLTSSASFMEIDINNEGWVYPKDFKE 52 (62)
Q Consensus 27 dltsS~~F~e~d~~~~G~Is~keF~k 52 (62)
+--+...|++.|..++|.+-..||..
T Consensus 20 ~~yA~~LFq~~D~s~~g~Le~~Ef~~ 45 (51)
T PF14788_consen 20 DEYARQLFQECDKSQSGRLEGEEFEE 45 (51)
T ss_dssp HHHHHHHHHHH-SSSSSEBEHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCccHHHHHH
Confidence 33345578999999999999999875
No 86
>PF12923 RRP7: Ribosomal RNA-processing protein 7 (RRP7); InterPro: IPR024326 Ribosomal RNA-processing protein 7 (RRP7) is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly []. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [, ]. This entry includes RRP7 and homologous sequences from other organisms.
Probab=26.60 E-value=29 Score=22.64 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhccccCCCc----cccccCCCCCccc
Q psy8741 12 VELILKYFDMFLKLKDLTSSAS----FMEIDINNEGWVY 46 (62)
Q Consensus 12 ve~ilkffdmflKLkdltsS~~----F~e~d~~~~G~Is 46 (62)
.+.+.+.-|.|+..=|-..... -..--||-||||+
T Consensus 16 ~~~Lq~~vd~~m~~yd~~~~~~~~~~~~~~~~DEDGwvt 54 (131)
T PF12923_consen 16 PDALQEEVDEYMAKYDKREEEEKKEAKKENEPDEDGWVT 54 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCEE
Confidence 3444455555554433332222 1233489999986
No 87
>KOG0377|consensus
Probab=26.21 E-value=37 Score=28.38 Aligned_cols=55 Identities=29% Similarity=0.360 Sum_probs=44.8
Q ss_pred cccccccchhHHHHHHHHH----------HHHhhccccCCCccccc------------cCCCCCcccchhHHHHHHH
Q psy8741 2 VDTLVESAANVELILKYFD----------MFLKLKDLTSSASFMEI------------DINNEGWVYPKDFKEKMEQ 56 (62)
Q Consensus 2 Vd~LvEs~snve~ilkffd----------mflKLkdltsS~~F~e~------------d~~~~G~Is~keF~kaMe~ 56 (62)
|++|-.--|++|-|+.+-| =|.-.++|-+|+--.++ |.|+||-|---||.+|-+-
T Consensus 539 vetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 539 VETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 5677777899999999875 47788888888877665 5999999999999998653
No 88
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=25.96 E-value=52 Score=20.39 Aligned_cols=18 Identities=22% Similarity=0.606 Sum_probs=15.2
Q ss_pred CCCCcccchhHHHHHHHh
Q psy8741 40 NNEGWVYPKDFKEKMEQQ 57 (62)
Q Consensus 40 ~~~G~Is~keF~kaMe~q 57 (62)
.-.|.||++||++.+..=
T Consensus 25 ~L~~~is~~ef~~iI~~I 42 (118)
T PF10256_consen 25 ELSGYISPEEFEEIINTI 42 (118)
T ss_pred hhcCCCCHHHHHHHHHHH
Confidence 368999999999998763
No 89
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=25.87 E-value=28 Score=21.20 Aligned_cols=31 Identities=13% Similarity=0.411 Sum_probs=21.1
Q ss_pred HhhccccCCCcc---ccccCCCCCccc--chhHHHH
Q psy8741 23 LKLKDLTSSASF---MEIDINNEGWVY--PKDFKEK 53 (62)
Q Consensus 23 lKLkdltsS~~F---~e~d~~~~G~Is--~keF~ka 53 (62)
-||-.|.+++.+ -.|+++|+++|= +++|.+.
T Consensus 4 ~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~ 39 (103)
T PF00447_consen 4 SKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKE 39 (103)
T ss_dssp HHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhh
Confidence 366667776655 458999999643 5667763
No 90
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=25.77 E-value=21 Score=21.58 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=19.0
Q ss_pred CccccccCCCCCcccchhHHHHH
Q psy8741 32 ASFMEIDINNEGWVYPKDFKEKM 54 (62)
Q Consensus 32 ~~F~e~d~~~~G~Is~keF~kaM 54 (62)
.+||.. .++++.|+..|.++++
T Consensus 10 ~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 10 EAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp HHHHHH-CTSSSCEEHHHHHHHS
T ss_pred HHHHHH-HcCCCcccHHHHHHHc
Confidence 478999 8899999999998875
No 91
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=25.60 E-value=32 Score=24.30 Aligned_cols=23 Identities=9% Similarity=0.371 Sum_probs=17.4
Q ss_pred ccccCCCCCcccchhHHHHHHHh
Q psy8741 35 MEIDINNEGWVYPKDFKEKMEQQ 57 (62)
Q Consensus 35 ~e~d~~~~G~Is~keF~kaMe~q 57 (62)
++---|..+|||.+||-..+-=+
T Consensus 33 ~~e~V~~r~Wis~~ef~~~lais 55 (195)
T COG2059 33 RREVVERRKWISEEEFADALAIS 55 (195)
T ss_pred HHHHHHhccCCCHHHHHHHHHHH
Confidence 44446788999999998877543
No 92
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=25.09 E-value=47 Score=16.06 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=10.8
Q ss_pred cCCCCCcccchhHH
Q psy8741 38 DINNEGWVYPKDFK 51 (62)
Q Consensus 38 d~~~~G~Is~keF~ 51 (62)
|.|+||.|.--|+.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 67999999877764
No 93
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=24.96 E-value=43 Score=18.64 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=10.6
Q ss_pred CCcccchhHHHHH
Q psy8741 42 EGWVYPKDFKEKM 54 (62)
Q Consensus 42 ~G~Is~keF~kaM 54 (62)
-|||++.++++..
T Consensus 29 ~~~IT~eey~eIT 41 (45)
T TIGR01669 29 KKLITREQYKVIT 41 (45)
T ss_pred cCccCHHHHHHHh
Confidence 4899999998753
No 94
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=24.48 E-value=39 Score=21.02 Aligned_cols=11 Identities=18% Similarity=0.595 Sum_probs=8.5
Q ss_pred ccchhHHHHHH
Q psy8741 45 VYPKDFKEKME 55 (62)
Q Consensus 45 Is~keF~kaMe 55 (62)
||+.||.+||+
T Consensus 77 it~~e~~~alk 87 (87)
T PF13331_consen 77 ITREEFEEALK 87 (87)
T ss_pred CCHHHHHHHhC
Confidence 78888888774
No 95
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=23.39 E-value=34 Score=20.49 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.4
Q ss_pred hccccCCCccccccCCCCCcccchh
Q psy8741 25 LKDLTSSASFMEIDINNEGWVYPKD 49 (62)
Q Consensus 25 LkdltsS~~F~e~d~~~~G~Is~ke 49 (62)
+.|+|.-+.|++.|.+.+=+|+||.
T Consensus 29 IVdIT~m~~~~e~~l~~ktVVnHKn 53 (57)
T PF09953_consen 29 IVDITIMENFDELDLEEKTVVNHKN 53 (57)
T ss_pred EEEEEecCCccccCCCccEEEeece
Confidence 4578888999999999999998875
No 96
>smart00415 HSF heat shock factor.
Probab=22.47 E-value=59 Score=20.09 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=21.7
Q ss_pred HhhccccCCCccc---cccCCCCCccc--chhHHHH
Q psy8741 23 LKLKDLTSSASFM---EIDINNEGWVY--PKDFKEK 53 (62)
Q Consensus 23 lKLkdltsS~~F~---e~d~~~~G~Is--~keF~ka 53 (62)
.||-+|.+...+. .|+++|+++|= ++.|.+.
T Consensus 7 ~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~ 42 (105)
T smart00415 7 TKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKN 42 (105)
T ss_pred HHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHH
Confidence 4667777766665 48999999775 5557654
No 97
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=21.62 E-value=51 Score=19.32 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=12.2
Q ss_pred ccccccCCCCCcccchh
Q psy8741 33 SFMEIDINNEGWVYPKD 49 (62)
Q Consensus 33 ~F~e~d~~~~G~Is~ke 49 (62)
+..-||++.+|||++.+
T Consensus 25 ~p~VFd~~~~~~v~~d~ 41 (64)
T PF06902_consen 25 APEVFDQDDEPWVSPDE 41 (64)
T ss_pred CCCcccCCCCCcCCcCc
Confidence 34557888899997643
No 98
>PHA02754 hypothetical protein; Provisional
Probab=21.26 E-value=51 Score=20.41 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=12.6
Q ss_pred cccchhHHHHHHHhh
Q psy8741 44 WVYPKDFKEKMEQQK 58 (62)
Q Consensus 44 ~Is~keF~kaMe~qk 58 (62)
+|.-|+|.++|++-|
T Consensus 10 ~i~eK~Fke~MRelk 24 (67)
T PHA02754 10 AIMEKDFKEAMRELK 24 (67)
T ss_pred HHHHhHHHHHHHHHH
Confidence 577899999999765
No 99
>COG2306 Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]
Probab=21.18 E-value=60 Score=23.50 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=13.1
Q ss_pred CCCcccchhHHHHHH
Q psy8741 41 NEGWVYPKDFKEKME 55 (62)
Q Consensus 41 ~~G~Is~keF~kaMe 55 (62)
.-|.|||+.|++|..
T Consensus 133 ~~GlIT~~qf~~Ay~ 147 (183)
T COG2306 133 RYGLITPEQFEKAYR 147 (183)
T ss_pred HcCCCCHHHHHHHHH
Confidence 469999999999975
No 100
>PF10747 DUF2522: Protein of unknown function (DUF2522); InterPro: IPR019683 This entry represents the Sporulation inhibitor of replication (sirA) family of proteins from Bacillus sp. Induction of sporulation in rapidly growing cells inhibits replication; this is thought to be through the action of SirA protein and independent of phosphorylated Spo0A; however SirA protein synthesis is induced by Spo0A [].
Probab=20.62 E-value=1.1e+02 Score=20.96 Aligned_cols=38 Identities=21% Similarity=0.586 Sum_probs=28.5
Q ss_pred ccccchhHHHHHHHHHHHHhhccccCCCcccccc--CCCCCcccc
Q psy8741 5 LVESAANVELILKYFDMFLKLKDLTSSASFMEID--INNEGWVYP 47 (62)
Q Consensus 5 LvEs~snve~ilkffdmflKLkdltsS~~F~e~d--~~~~G~Is~ 47 (62)
+++++.+...=.-||.+.=|+ +..|...| -+.-||++|
T Consensus 98 ~l~~~Gs~~aet~~FevLrk~-----~~~FlAvd~~~~ryGWL~P 137 (142)
T PF10747_consen 98 QLNCSGSYDAETDFFEVLRKI-----SPCFLAVDFENKRYGWLKP 137 (142)
T ss_pred EEEecCCHHHHHHHHHHHHhC-----CCceEEEecCCCcccCcCc
Confidence 467788888888888887664 56777766 556799987
No 101
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=20.34 E-value=29 Score=24.04 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=21.7
Q ss_pred ccccCCCccccccCCCCCcccchhHHHH
Q psy8741 26 KDLTSSASFMEIDINNEGWVYPKDFKEK 53 (62)
Q Consensus 26 kdltsS~~F~e~d~~~~G~Is~keF~ka 53 (62)
-++.|.....++|+|++|..+++|-++.
T Consensus 48 De~~S~~ll~~~D~~~dg~~~~~el~~l 75 (212)
T PF06226_consen 48 DEFFSAYLLEGLDKDGDGKLDPEELAAL 75 (212)
T ss_pred CchhHHHHHHhhhhcccCCCCHHHHHHH
Confidence 3456666777999999999999886543
Done!