RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8741
         (62 letters)



>gnl|CDD|185216 PRK15316, PRK15316, RatA-like protein; Provisional.
          Length = 2683

 Score = 26.2 bits (57), Expect = 0.98
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 25   LKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQKSYTP 62
              +LTS++   +I+ NNE W Y   F    +   S +P
Sbjct: 2305 WSELTSTSGVGKINNNNEDWPY---FTPTQKSDASVSP 2339


>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.
          Length = 1294

 Score = 23.9 bits (52), Expect = 6.3
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 3    DTLVESAANVELILKY-FDMFLKLK---DLTSSASFMEIDINNEGWVYP 47
            DT+V+ A  VE IL   F++  +LK   D+T + +  +I     G VY 
Sbjct: 1143 DTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALALSDIKAQMGGLVYR 1191


>gnl|CDD|197803 smart00609, VIT, Vault protein Inter-alpha-Trypsin domain. 
          Length = 130

 Score = 23.5 bits (51), Expect = 9.3
 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 33 SFMEIDINNEGWVYPKDFKEKMEQQKSY 60
          S   + I+  G  Y  + KEK   QK Y
Sbjct: 62 SNFAMTID--GKTYVGEIKEKEVAQKQY 87


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0706    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,954,133
Number of extensions: 201968
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 5
Length of query: 62
Length of database: 10,937,602
Length adjustment: 33
Effective length of query: 29
Effective length of database: 9,473,920
Effective search space: 274743680
Effective search space used: 274743680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)