RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8741
         (62 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.7 bits (58), Expect = 0.39
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 2   VDTLVESAANVELILKYFDMFLKLKDLTSSASFME-IDINNEGWVYPK---DFKEKMEQQ 57
           +D ++ S   V   L+ F   L  K       F+E +   N  ++      + ++     
Sbjct: 51  IDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 58  KSY 60
           + Y
Sbjct: 110 RMY 112


>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2,
           protein structure initiative, northeast structural
           genomics consortium; HET: CXS; 2.00A {Thermotoga
           maritima MSB8}
          Length = 304

 Score = 26.0 bits (58), Expect = 0.73
 Identities = 4/21 (19%), Positives = 14/21 (66%)

Query: 1   MVDTLVESAANVELILKYFDM 21
           + + ++ +   ++ ++KYFD+
Sbjct: 99  LTEEIISAMLELDKVVKYFDV 119


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
          synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.0 bits (54), Expect = 2.0
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 7  ESAANVELILKYFDMFLKLKDLTSSASFMEI 37
          E     EL+ K+      L + +    F ++
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83


>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction,
          receptor, UBL conjugation, UBL conjugation pathway,
          acetylation, cytoplasm; 2.60A {Homo sapiens} PDB:
          3dqv_C
          Length = 382

 Score = 22.8 bits (48), Expect = 9.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 13 ELILKYFDMFLKLKDLTSSASFMEID 38
          E +  Y DM L+   L+   +  EI+
Sbjct: 8  EELANYCDMLLRKTPLSKKLTSEEIE 33


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 874,527
Number of extensions: 35938
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 9
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.0 bits)