BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8742
(968 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 619 bits (1595), Expect = e-177, Method: Compositional matrix adjust.
Identities = 375/929 (40%), Positives = 510/929 (54%), Gaps = 114/929 (12%)
Query: 47 FLNGASANYVEEMYRSWQEDPKSVHASWDAFFRSSSAGALPEDPKSVHASWDAFFRSSSA 106
+L+GA+ +++E++Y + DP SV A+W + F+ + P H+ +FR
Sbjct: 14 YLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGV--KPDQFHSQTREYFRR--- 68
Query: 107 GALPGQAYQPPPTLAPPSGNQVPISSLAPFVGGASSHFNEPLSEKIIDDHLAVQALIRSY 166
L A + T++ P N + L LI +Y
Sbjct: 69 --LAKDASRYSSTISDPDTNVKQVKVLQ---------------------------LINAY 99
Query: 167 QIRGHHIAQLDPLGI----QAADLDDKHPQELIFHNFWPSSISYAQQLQHKVADMMQKET 222
+ RGH A LDPLG+ + ADLD FH+ E
Sbjct: 100 RFRGHQHANLDPLGLWQQDKVADLDPS------FHDL--------------------TEA 133
Query: 223 DMEKVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLET 282
D ++ F + S F GKE + L E+++ L+ TYC IGAE+M I S E+ WI+Q++E+
Sbjct: 134 DFQETFNVGS--FASGKE-TMKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIES 190
Query: 283 PGIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTEL 342
SE++KR L+ LT A G E +L K+ KRF LEG + LIP +K++I +
Sbjct: 191 GRATFNSEEKKRF-LSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNS 249
Query: 343 GVESVVMGMPHRGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRV 402
G VV+GM HRGRLNVL NV K + +F +FA G+GDVKYH+G + +
Sbjct: 250 GTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDF--QT 307
Query: 403 TNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVF 462
+ LA+ NPSHLE V PVV G RA + KV+ I +HGDAA GQGVV
Sbjct: 308 DGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQ 367
Query: 463 ETFHLSDLPDYTTHGTIHIVVNNQIGFTT-DPRFSRSSSYCTDVARVVNAPIFHVNSDDP 521
ET ++S Y GT+ IV+NNQ+GFTT +P +RS+ YCTD+ ++V APIFHVN+DDP
Sbjct: 368 ETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDP 427
Query: 522 EAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKY 581
EAV V LA ++RNTF +DV ID+V YRR+GHNE DEP TQPLMY+ IKK P Y
Sbjct: 428 EAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIY 487
Query: 582 ANKLIEEKVVTEEQVKDVKEKYDKI-----CEEAYVNARKETHIKYKDWLDSPWSGFFEG 636
A+KL +EKV T E ++ Y C A + +L+ W +
Sbjct: 488 ADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPN 547
Query: 637 KDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVES-RTVDWAL 695
K +K L + KR S+ P A E + + +I R M + DW
Sbjct: 548 KVEMK---------RLQELAKRISTVP-EAVE--MQSRVAKIYADRQAMAAGEKLFDWGG 595
Query: 696 GEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTV 755
E +A+ +L+ EGI VRLSG+D RGTF HRH V+H+Q+ + +TY PL +++ Q + V
Sbjct: 596 AENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQS-NGSTYTPLQHIHNGQGAFRV 654
Query: 756 CNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGL 815
+S LSE VL FE G++ P TL WEAQFGDF N AQ +IDQFISSG+ KW R GL
Sbjct: 655 WDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGL 714
Query: 816 VMLLPHGLEGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTT 875
VMLLPHG EG GPEHSSARLER+LQ+ ++ ++V VP +T
Sbjct: 715 VMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVC---VP------------------ST 753
Query: 876 PANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERK 935
PA ++H+LRRQ R+PLV+M+PKSLLRHP A SS +++ GT FL I + I E
Sbjct: 754 PAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT-FLPAIGE--IDELD 810
Query: 936 ADSVEKLVFCSGKVYYDLIKARNDNNLGD 964
V+++V CSGKVYYDL++ R NN D
Sbjct: 811 PKGVKRVVMCSGKVYYDLLEQRRKNNQHD 839
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 618 bits (1594), Expect = e-177, Method: Compositional matrix adjust.
Identities = 375/929 (40%), Positives = 510/929 (54%), Gaps = 114/929 (12%)
Query: 47 FLNGASANYVEEMYRSWQEDPKSVHASWDAFFRSSSAGALPEDPKSVHASWDAFFRSSSA 106
+L+GA+ +++E++Y + DP SV A+W + F+ + P H+ +FR
Sbjct: 14 YLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGV--KPDQFHSQTREYFRR--- 68
Query: 107 GALPGQAYQPPPTLAPPSGNQVPISSLAPFVGGASSHFNEPLSEKIIDDHLAVQALIRSY 166
L A + T++ P N + L LI +Y
Sbjct: 69 --LAKDASRYSSTISDPDTNVKQVKVLQ---------------------------LINAY 99
Query: 167 QIRGHHIAQLDPLGI----QAADLDDKHPQELIFHNFWPSSISYAQQLQHKVADMMQKET 222
+ RGH A LDPLG+ + ADLD FH+ E
Sbjct: 100 RFRGHQHANLDPLGLWQQDKVADLDPS------FHDL--------------------TEA 133
Query: 223 DMEKVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLET 282
D ++ F + S F GKE + L E+++ L+ TYC IGAE+M I S E+ WI+Q++E+
Sbjct: 134 DFQETFNVGS--FASGKE-TMKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIES 190
Query: 283 PGIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTEL 342
SE++KR L+ LT A G E +L K+ KRF LEG + LIP +K++I +
Sbjct: 191 GRATFNSEEKKRF-LSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNS 249
Query: 343 GVESVVMGMPHRGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRV 402
G VV+GM HRGRLNVL NV K + +F +FA G+GDVKYH+G + +
Sbjct: 250 GTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDF--QT 307
Query: 403 TNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVF 462
+ LA+ NPSHLE V PVV G RA + KV+ I +HGDAA GQGVV
Sbjct: 308 DGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQ 367
Query: 463 ETFHLSDLPDYTTHGTIHIVVNNQIGFTT-DPRFSRSSSYCTDVARVVNAPIFHVNSDDP 521
ET ++S Y GT+ IV+NNQ+GFTT +P +RS+ YCTD+ ++V APIFHVN+DDP
Sbjct: 368 ETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDP 427
Query: 522 EAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKY 581
EAV V LA ++RNTF +DV ID+V YRR+GHNE DEP TQPLMY+ IKK P Y
Sbjct: 428 EAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIY 487
Query: 582 ANKLIEEKVVTEEQVKDVKEKYDKI-----CEEAYVNARKETHIKYKDWLDSPWSGFFEG 636
A+KL +EKV T E ++ Y C A + +L+ W +
Sbjct: 488 ADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPN 547
Query: 637 KDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVES-RTVDWAL 695
K +K L + KR S+ P A E + + +I R M + DW
Sbjct: 548 KVEMK---------RLQELAKRISTVP-EAVE--MQSRVAKIYGDRQAMAAGEKLFDWGG 595
Query: 696 GEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTV 755
E +A+ +L+ EGI VRLSG+D RGTF HRH V+H+Q+ + +TY PL +++ Q + V
Sbjct: 596 AENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQS-NGSTYTPLQHIHNGQGAFRV 654
Query: 756 CNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGL 815
+S LSE VL FE G++ P TL WEAQFGDF N AQ +IDQFISSG+ KW R GL
Sbjct: 655 WDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGL 714
Query: 816 VMLLPHGLEGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTT 875
VMLLPHG EG GPEHSSARLER+LQ+ ++ ++V VP +T
Sbjct: 715 VMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVC---VP------------------ST 753
Query: 876 PANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERK 935
PA ++H+LRRQ R+PLV+M+PKSLLRHP A SS +++ GT FL I + I E
Sbjct: 754 PAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT-FLPAIGE--IDELD 810
Query: 936 ADSVEKLVFCSGKVYYDLIKARNDNNLGD 964
V+++V CSGKVYYDL++ R NN D
Sbjct: 811 PKGVKRVVMCSGKVYYDLLEQRRKNNQHD 839
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
Length = 1113
Score = 578 bits (1489), Expect = e-165, Method: Compositional matrix adjust.
Identities = 343/835 (41%), Positives = 471/835 (56%), Gaps = 81/835 (9%)
Query: 150 EKIIDDHLAVQALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQELIFHNF--WPSSISYA 207
+ I D + V LI +Y+ RGH +A +DPL + ++ H W
Sbjct: 247 DSIEDKNARVIELIAAYRNRGHLMADIDPLRLDNTRFRSHPDLDVNSHGLTLW------- 299
Query: 208 QQLQHKVADMMQKETDMEKVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFI 267
D+++ FK+ F G + K L R+I+ L D YCR +G E+ I
Sbjct: 300 ---------------DLDREFKVDG--FAGVQRKKL--RDILSVLRDAYCRHVGVEYTHI 340
Query: 268 NSLEQCNWIRQKLETPGIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAEI 327
EQ WI++++ET +QK IL++L A FE FL K+ +KRF LEGAE
Sbjct: 341 LEPEQQRWIQERVETKHDKPTVAEQK-YILSKLNAAEAFETFLQTKYVGQKRFSLEGAET 399
Query: 328 LIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQFAAL--EAADDGS 385
+IP M VID+ E G++ VV+ MPHRGRLNVLAN+ KP QIF++F + GS
Sbjct: 400 VIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGS 459
Query: 386 GDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKK-- 443
GDVKYHLG + + +I +++ ANPSHLEAVDPV++G RA+Q GE
Sbjct: 460 GDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDN 519
Query: 444 ---VMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSS 500
V+ ++LHGDAAF GQGVV ET +L+ L Y T GTIHIVVNNQIGFTT P SRSS
Sbjct: 520 RFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSE 579
Query: 501 YCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEP 560
YCTDVA+++ APIFHVN DDPEA V LA ++R F KDVVID++ YRR GHNE D+P
Sbjct: 580 YCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDP 639
Query: 561 MFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHI 620
TQP MY +I + Y LI ++ ++ +D Y E + R+
Sbjct: 640 SMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELE-- 697
Query: 621 KYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILK 680
K ++ S + + P K++T +++ L IG + P F +H + +L+
Sbjct: 698 --KHEIEPSESVEADQQIPSKLATA-VDKAMLQRIGDAHLALPEG---FTVHPRVRPVLE 751
Query: 681 ARLQMVESRTVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKAT- 739
R +M +DWA E +A GSL+ EG VRLSGQD +RGTF+ RH V+ VD+ T
Sbjct: 752 KRREMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVI----VDRKTG 807
Query: 740 --YRPLNNLY--PDQAP----YTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFN 791
+ PL L PD P + V NS+LSEF +GFE G+S+ NP+ +V WEAQFGDF
Sbjct: 808 EEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFV 867
Query: 792 NTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGPEHSSARLERFLQMSDDEPIRVIL 851
N AQ IID+FISSG+AKW + S +V+LLPHG EG GP+H+S R+ERFLQ+ + +
Sbjct: 868 NGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLQLWAEGSM---- 923
Query: 852 VLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKS 911
IA +TPAN FH+LRR ++PL++ TPKS+LR+ A S
Sbjct: 924 -----------------TIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVS 966
Query: 912 SFDDMIEGTEFLRVIPDDSISERKAD--SVEKLVFCSGKVYYDLIKARNDNNLGD 964
D E ++F V+ + ++ + D V +L+ SGK+YY+L + N D
Sbjct: 967 DIRDFTE-SKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAARKAKENRED 1020
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 577 bits (1488), Expect = e-165, Method: Compositional matrix adjust.
Identities = 344/837 (41%), Positives = 472/837 (56%), Gaps = 83/837 (9%)
Query: 149 SEKIIDDHLAVQALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQELIFHNF--WPSSISY 206
+ I D + V LI +Y+ RGH +A +DPL + ++ H W
Sbjct: 1 GDSIEDKNARVIELIAAYRNRGHLMADIDPLRLDNTRFRSHPDLDVNSHGLTLW------ 54
Query: 207 AQQLQHKVADMMQKETDMEKVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMF 266
D+++ FK+ F G + K L R+I+ L D YCR +G E+
Sbjct: 55 ----------------DLDREFKVDG--FAGVQRKKL--RDILSVLRDAYCRHVGVEYTH 94
Query: 267 INSLEQCNWIRQKLETPGIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAE 326
I EQ WI++++ET +QK IL++L A FE FL K+ +KRF LEGAE
Sbjct: 95 ILEPEQQRWIQERVETKHDKPTVAEQK-YILSKLNAAEAFETFLQTKYVGQKRFSLEGAE 153
Query: 327 ILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQFAAL--EAADDG 384
+IP M VID+ E G++ VV+ MPHRGRLNVLAN+ KP QIF++F + G
Sbjct: 154 TVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHG 213
Query: 385 SGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKK- 443
SGDVKYHLG + + +I +++ ANPSHLEAVDPV++G RA+Q GE
Sbjct: 214 SGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSD 273
Query: 444 ----VMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSS 499
V+ ++LHGDAAF GQGVV ET +L+ L Y T GTIHIVVNNQIGFTT P SRSS
Sbjct: 274 NRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSS 333
Query: 500 SYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDE 559
YCTDVA+++ APIFHVN DDPEA V LA ++R F KDVVID++ YRR GHNE D+
Sbjct: 334 EYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDD 393
Query: 560 PMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARK-ET 618
P TQP MY +I + Y LI ++ ++ +D Y E + R+ E
Sbjct: 394 PSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEK 453
Query: 619 HIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERI 678
H ++ S + + P K++T +++ L IG + P F +H + +
Sbjct: 454 H-----EIEPSESVEADQQIPSKLATA-VDKAMLQRIGDAHLALPEG---FTVHPRVRPV 504
Query: 679 LKARLQMVESRTVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKA 738
L+ R +M +DWA E +A GSL+ EG VRLSGQD +RGTF+ RH V+ VD+
Sbjct: 505 LEKRREMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVI----VDRK 560
Query: 739 T---YRPLNNLY--PDQAP----YTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGD 789
T + PL L PD P + V NS+LSEF +GFE G+S+ NP+ +V WEAQFGD
Sbjct: 561 TGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGD 620
Query: 790 FNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGPEHSSARLERFLQMSDDEPIRV 849
F N AQ IID+FISSG+AKW + S +V+LLPHG EG GP+H+S R+ERFLQ+ + +
Sbjct: 621 FVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLQLWAEGSM-- 678
Query: 850 ILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEA 909
IA +TPAN FH+LRR ++PL++ TPKS+LR+ A
Sbjct: 679 -------------------TIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAA 719
Query: 910 KSSFDDMIEGTEFLRVIPDDSISERKAD--SVEKLVFCSGKVYYDLIKARNDNNLGD 964
S D E ++F V+ + ++ + D V +L+ SGK+YY+L + N D
Sbjct: 720 VSDIRDFTE-SKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAARKAKENRED 775
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 11/173 (6%)
Query: 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTD-PRFSRSS 499
GK + + L+GD A QG +FE ++++ L I I NN+ G T R + S+
Sbjct: 177 GKDEVCLTLYGDGA-ANQGQIFEAYNMAALWKLPC---IFICENNRYGMGTSVERAAAST 232
Query: 500 SYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDE 559
Y R P V+ D V AA + + +++++ +YR +GH+ D
Sbjct: 233 DY---YKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDP 289
Query: 560 PMF--TQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEA 610
+ T+ + ++ K+ P + ++++ + + E++K++ + K E+A
Sbjct: 290 GVSYRTREEIQEVRSKSDPIM-LLKDRMVNSNLASVEELKEIDVEVRKEIEDA 341
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 11/173 (6%)
Query: 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTD-PRFSRSS 499
GK + + L+GD A QG +FE ++++ L I I NN+ G T R + S+
Sbjct: 177 GKDEVCLTLYGDGA-ANQGQIFEAYNMAALWKLPC---IFICENNRYGMGTSVERAAAST 232
Query: 500 SYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDE 559
Y R P V+ D V AA + + +++++ +YR +GH+ D
Sbjct: 233 DY---YKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDP 289
Query: 560 PMF--TQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEA 610
+ T+ + ++ K+ P + ++++ + + E++K++ + K E+A
Sbjct: 290 GVSYRTREEIQEVRSKSDPIM-LLKDRMVNSNLASVEELKEIDVEVRKEIEDA 341
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 11/173 (6%)
Query: 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTD-PRFSRSS 499
GK + + L+GD A QG +FE ++++ L I I NN+ G T R + S+
Sbjct: 177 GKDEVCLTLYGDGA-ANQGQIFEAYNMAALWKLPC---IFICENNRYGMGTAVERAAAST 232
Query: 500 SYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDE 559
Y R P V+ D V AA + + +++++ +YR +GH+ D
Sbjct: 233 DY---YKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDP 289
Query: 560 PMF--TQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEA 610
+ T+ + ++ K+ P + ++++ + + E++K++ + K E+A
Sbjct: 290 GVAYRTREEIQEVRSKSDPIM-LLKDRMVNSNLASVEELKEIDVEVRKEIEDA 341
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 441 GKKVMSILLHGDAAFCGQGVVFETFH---LSDLPDYTTHGTIHIVVNNQIGFTTD-PRFS 496
GK + + L+GD A QG +FE ++ L LP I I NN+ G T R +
Sbjct: 160 GKDEVCLTLYGDGA-ANQGQIFEAYNXAALWKLP------CIFICENNRYGXGTSVERAA 212
Query: 497 RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNE 556
S+ Y R P V+ D V AA + + ++ ++ +YR +GH+
Sbjct: 213 ASTDY---YKRGDFIPGLRVDGXDILCVREATRFAAAYCRSGKGPILXELQTYRYHGHSX 269
Query: 557 IDEPMF--TQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEA 610
D + T+ + ++ K+ P + ++ + + + E++K++ + K E+A
Sbjct: 270 SDPGVSYRTREEIQEVRSKSDP-IXLLKDRXVNSNLASVEELKEIDVEVRKEIEDA 324
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 43/172 (25%)
Query: 745 NLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDF---------NNTAQ 795
LY P V ++ L+E G+LGF +G +M + E QF DF N+ A+
Sbjct: 90 GLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVA--EIQFVDFIWLGADELLNHIAK 147
Query: 796 CIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGPEHSSARLERFLQMSDDEPIRVILVLVP 855
++ S G K + LV+ P G G + S E
Sbjct: 148 L---RYRSGGNYK----APLVVRTPVGSGTRGGLYHSNSPEAIF---------------- 184
Query: 856 IEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHP 907
+H ++ +TP N +L+ A+ P+V + PK L R P
Sbjct: 185 -------VHTPGLVVVMPSTPYNAKGLLK--AAIRGDDPVVFLEPKILYRAP 227
>pdb|4APW|A Chain A, Alp12 Filament Structure
pdb|4APW|B Chain B, Alp12 Filament Structure
pdb|4APW|C Chain C, Alp12 Filament Structure
pdb|4APW|D Chain D, Alp12 Filament Structure
pdb|4APW|E Chain E, Alp12 Filament Structure
pdb|4APW|F Chain F, Alp12 Filament Structure
pdb|4APW|G Chain G, Alp12 Filament Structure
pdb|4APW|H Chain H, Alp12 Filament Structure
pdb|4APW|I Chain I, Alp12 Filament Structure
pdb|4APW|J Chain J, Alp12 Filament Structure
pdb|4APW|K Chain K, Alp12 Filament Structure
pdb|4APW|L Chain L, Alp12 Filament Structure
pdb|4APW|M Chain M, Alp12 Filament Structure
pdb|4APW|N Chain N, Alp12 Filament Structure
pdb|4APW|O Chain O, Alp12 Filament Structure
pdb|4APW|P Chain P, Alp12 Filament Structure
Length = 329
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 874 TTPANLFHILRRQIALP--------FRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRV 925
T+ NL H L A+ + LVL P S+LR+ +AK + D I+G + V
Sbjct: 79 TSKTNLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITV 138
Query: 926 IPDD 929
DD
Sbjct: 139 KVDD 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,980,101
Number of Sequences: 62578
Number of extensions: 1297704
Number of successful extensions: 3411
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3369
Number of HSP's gapped (non-prelim): 18
length of query: 968
length of database: 14,973,337
effective HSP length: 108
effective length of query: 860
effective length of database: 8,214,913
effective search space: 7064825180
effective search space used: 7064825180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)