Query psy8742
Match_columns 968
No_of_seqs 420 out of 3044
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 18:03:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0450|consensus 100.0 1E-245 3E-250 2044.3 66.3 878 36-968 39-923 (1017)
2 PRK12270 kgd alpha-ketoglutara 100.0 6E-221 1E-225 1914.7 75.4 754 152-968 382-1138(1228)
3 COG0567 SucA 2-oxoglutarate de 100.0 1E-213 3E-218 1865.0 60.0 810 44-968 6-816 (906)
4 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 1E-208 3E-213 1866.9 77.3 832 47-968 1-841 (929)
5 PRK09404 sucA 2-oxoglutarate d 100.0 5E-207 1E-211 1862.3 77.3 822 44-968 10-835 (924)
6 KOG0451|consensus 100.0 5E-194 1E-198 1594.9 41.4 759 156-968 53-826 (913)
7 cd02016 TPP_E1_OGDC_like Thiam 100.0 6.6E-75 1.4E-79 623.4 22.5 262 306-568 1-265 (265)
8 COG1071 AcoA Pyruvate/2-oxoglu 100.0 1.3E-65 2.7E-70 567.9 30.9 310 286-630 22-342 (358)
9 PF00676 E1_dh: Dehydrogenase 100.0 1.1E-62 2.3E-67 542.3 28.0 291 298-623 1-300 (300)
10 PLN02269 Pyruvate dehydrogenas 100.0 1.1E-61 2.5E-66 544.5 33.8 309 286-631 25-342 (362)
11 PLN02374 pyruvate dehydrogenas 100.0 6.7E-60 1.4E-64 539.6 33.2 319 285-633 80-408 (433)
12 TIGR03182 PDH_E1_alph_y pyruva 100.0 1.5E-59 3.2E-64 520.8 32.1 304 290-628 1-312 (315)
13 CHL00149 odpA pyruvate dehydro 100.0 3.5E-57 7.5E-62 506.1 33.0 315 286-630 15-339 (341)
14 KOG0225|consensus 100.0 1.3E-57 2.8E-62 487.2 25.0 303 286-626 54-365 (394)
15 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 1.2E-54 2.6E-59 477.2 30.9 284 296-614 1-293 (293)
16 TIGR03181 PDH_E1_alph_x pyruva 100.0 1.1E-51 2.4E-56 462.3 32.2 301 286-631 19-328 (341)
17 KOG1182|consensus 100.0 1.5E-49 3.3E-54 421.2 18.5 322 266-626 66-396 (432)
18 PRK12315 1-deoxy-D-xylulose-5- 100.0 1.6E-37 3.5E-42 369.6 38.6 401 345-960 64-482 (581)
19 COG0022 AcoB Pyruvate/2-oxoglu 100.0 3.9E-38 8.5E-43 337.7 14.3 201 703-959 14-221 (324)
20 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 1.2E-30 2.6E-35 312.7 35.9 360 413-959 108-516 (617)
21 PRK05899 transketolase; Review 100.0 2.2E-29 4.9E-34 303.0 33.4 393 414-959 116-531 (624)
22 PRK05444 1-deoxy-D-xylulose-5- 100.0 9.4E-29 2E-33 295.3 35.9 361 413-960 114-485 (580)
23 KOG0525|consensus 100.0 1.5E-31 3.2E-36 276.5 5.0 162 707-916 57-226 (362)
24 KOG0524|consensus 100.0 8.9E-30 1.9E-34 267.0 11.5 202 705-957 49-256 (359)
25 TIGR00232 tktlase_bact transke 100.0 1.1E-25 2.3E-30 271.7 42.6 424 411-959 105-561 (653)
26 PRK12571 1-deoxy-D-xylulose-5- 100.0 5.2E-26 1.1E-30 273.8 38.8 354 419-959 122-525 (641)
27 PLN02582 1-deoxy-D-xylulose-5- 100.0 2.5E-25 5.3E-30 267.2 38.4 359 414-959 142-564 (677)
28 PLN02234 1-deoxy-D-xylulose-5- 99.9 1.5E-25 3.3E-30 267.1 30.8 364 413-959 174-565 (641)
29 PRK12754 transketolase; Review 99.9 2.2E-22 4.7E-27 242.2 43.9 430 413-959 111-570 (663)
30 PRK12753 transketolase; Review 99.9 1.6E-22 3.5E-27 244.3 43.0 426 413-959 111-570 (663)
31 PTZ00089 transketolase; Provis 99.9 1.6E-22 3.5E-27 244.5 41.3 427 413-960 113-570 (661)
32 PLN02790 transketolase 99.9 1.2E-21 2.6E-26 236.7 45.0 430 411-959 100-561 (654)
33 PF02779 Transket_pyr: Transke 99.9 4.1E-24 8.9E-29 219.3 9.0 176 690-907 2-178 (178)
34 cd07036 TPP_PYR_E1-PDHc-beta_l 99.9 1.2E-23 2.7E-28 214.1 11.2 153 703-901 9-167 (167)
35 PTZ00182 3-methyl-2-oxobutanat 99.9 1.8E-22 3.9E-27 227.8 17.0 203 703-960 47-255 (355)
36 PLN02225 1-deoxy-D-xylulose-5- 99.9 4.7E-21 1E-25 229.2 26.0 446 277-959 79-588 (701)
37 CHL00144 odpB pyruvate dehydro 99.9 5.5E-22 1.2E-26 221.8 15.9 200 703-959 16-222 (327)
38 PRK11892 pyruvate dehydrogenas 99.9 1.2E-21 2.5E-26 227.5 16.1 200 703-959 154-361 (464)
39 PRK09212 pyruvate dehydrogenas 99.9 1.7E-21 3.7E-26 217.9 16.5 202 701-959 14-222 (327)
40 PLN02683 pyruvate dehydrogenas 99.8 6E-20 1.3E-24 207.5 16.9 202 701-959 37-249 (356)
41 PRK05261 putative phosphoketol 99.7 4.8E-15 1E-19 179.6 34.3 201 322-553 48-287 (785)
42 cd07033 TPP_PYR_DXS_TK_like Py 99.7 2.4E-17 5.3E-22 166.0 11.2 145 703-901 9-156 (156)
43 smart00861 Transket_pyr Transk 99.7 1.8E-16 3.9E-21 160.9 14.4 158 697-901 6-167 (168)
44 TIGR03186 AKGDH_not_PDH alpha- 99.7 4.1E-14 8.8E-19 173.5 33.8 443 415-960 188-746 (889)
45 cd02007 TPP_DXS Thiamine pyrop 99.7 3.9E-16 8.4E-21 163.0 12.0 118 414-553 73-194 (195)
46 PRK13012 2-oxoacid dehydrogena 99.6 1.1E-11 2.3E-16 153.1 46.7 430 416-960 203-754 (896)
47 KOG0523|consensus 99.6 5.2E-13 1.1E-17 154.7 27.6 401 416-959 118-526 (632)
48 PRK09405 aceE pyruvate dehydro 99.6 1.5E-10 3.3E-15 142.5 49.3 442 418-960 197-749 (891)
49 cd02012 TPP_TK Thiamine pyroph 99.6 2E-14 4.3E-19 155.9 12.9 130 414-557 103-235 (255)
50 COG1154 Dxs Deoxyxylulose-5-ph 99.6 8.9E-13 1.9E-17 153.6 26.4 359 416-959 115-522 (627)
51 COG0021 TktA Transketolase [Ca 99.6 3.9E-12 8.4E-17 149.1 31.8 421 416-959 116-569 (663)
52 cd02011 TPP_PK Thiamine pyroph 99.5 2.1E-13 4.5E-18 144.9 13.6 156 342-537 16-175 (227)
53 PRK11864 2-ketoisovalerate fer 99.4 3.5E-12 7.5E-17 140.9 17.4 163 353-548 15-206 (300)
54 PF00456 Transketolase_N: Tran 99.3 1.8E-11 4E-16 137.5 11.6 180 415-605 110-314 (332)
55 COG3959 Transketolase, N-termi 99.2 8.3E-11 1.8E-15 123.0 11.6 130 410-550 113-242 (243)
56 cd02017 TPP_E1_EcPDC_like Thia 99.1 5.5E-10 1.2E-14 126.7 14.3 133 414-555 116-323 (386)
57 cd00568 TPP_enzymes Thiamine p 99.1 1.7E-10 3.7E-15 116.0 8.2 110 415-548 45-168 (168)
58 TIGR00759 aceE pyruvate dehydr 99.1 3.1E-07 6.7E-12 112.8 37.1 132 415-555 188-394 (885)
59 cd02002 TPP_BFDC Thiamine pyro 99.0 8E-10 1.7E-14 113.1 9.7 110 416-548 49-178 (178)
60 cd02004 TPP_BZL_OCoD_HPCL Thia 99.0 2.1E-09 4.5E-14 109.8 10.4 109 416-548 48-171 (172)
61 cd03372 TPP_ComE Thiamine pyro 98.9 1.1E-08 2.3E-13 105.9 12.5 112 416-550 42-156 (179)
62 cd02013 TPP_Xsc_like Thiamine 98.9 3.3E-09 7.2E-14 110.9 7.9 116 416-551 53-181 (196)
63 cd02014 TPP_POX Thiamine pyrop 98.9 7E-09 1.5E-13 106.7 9.6 112 416-550 51-174 (178)
64 cd02015 TPP_AHAS Thiamine pyro 98.9 1.1E-08 2.4E-13 105.9 10.4 112 416-550 50-175 (186)
65 PRK07524 hypothetical protein; 98.8 1.5E-08 3.2E-13 121.0 9.7 115 416-553 407-533 (535)
66 cd02006 TPP_Gcl Thiamine pyrop 98.7 2.2E-08 4.8E-13 105.1 7.9 115 416-549 57-194 (202)
67 PRK08327 acetolactate synthase 98.7 5.2E-08 1.1E-12 117.4 11.0 115 416-548 430-566 (569)
68 cd02005 TPP_PDC_IPDC Thiamine 98.7 7.6E-08 1.6E-12 99.8 10.3 112 417-550 51-175 (183)
69 PRK06725 acetolactate synthase 98.7 6.8E-08 1.5E-12 116.4 10.1 111 416-549 422-545 (570)
70 cd03371 TPP_PpyrDC Thiamine py 98.6 1.5E-07 3.3E-12 98.1 10.6 113 416-551 48-165 (188)
71 PRK06163 hypothetical protein; 98.6 2.4E-07 5.1E-12 97.9 12.1 111 417-550 58-174 (202)
72 cd02001 TPP_ComE_PpyrDC Thiami 98.6 2.1E-07 4.6E-12 94.3 10.8 109 417-548 43-154 (157)
73 cd02008 TPP_IOR_alpha Thiamine 98.6 1.9E-07 4.1E-12 96.3 10.4 113 416-548 51-176 (178)
74 PF02775 TPP_enzyme_C: Thiamin 98.6 4.1E-08 8.9E-13 98.3 5.3 110 416-546 28-153 (153)
75 cd02010 TPP_ALS Thiamine pyrop 98.6 1.8E-07 3.9E-12 96.5 9.2 111 417-550 49-171 (177)
76 cd02003 TPP_IolD Thiamine pyro 98.6 1.2E-07 2.6E-12 100.0 7.6 112 416-550 48-185 (205)
77 TIGR03846 sulfopy_beta sulfopy 98.5 4.1E-07 8.9E-12 94.4 9.8 108 417-549 43-156 (181)
78 PRK07092 benzoylformate decarb 98.5 3.3E-07 7.2E-12 109.5 9.5 109 416-548 407-529 (530)
79 PRK06546 pyruvate dehydrogenas 98.5 5.4E-07 1.2E-11 108.9 10.8 110 416-548 408-529 (578)
80 cd02009 TPP_SHCHC_synthase Thi 98.5 4E-07 8.7E-12 93.6 8.3 109 416-548 51-174 (175)
81 cd03375 TPP_OGFOR Thiamine pyr 98.4 1E-06 2.2E-11 92.3 10.9 112 417-548 52-183 (193)
82 cd02018 TPP_PFOR Thiamine pyro 98.4 6.5E-07 1.4E-11 96.7 9.4 119 416-548 64-202 (237)
83 PRK08266 hypothetical protein; 98.4 7.7E-07 1.7E-11 106.6 10.5 116 416-554 402-530 (542)
84 PRK11865 pyruvate ferredoxin o 98.4 3.4E-06 7.4E-11 93.9 14.5 123 416-555 69-219 (299)
85 PF13292 DXP_synthase_N: 1-deo 98.4 7.3E-07 1.6E-11 96.6 8.8 117 416-548 111-270 (270)
86 PRK11269 glyoxylate carboligas 98.4 9.9E-07 2.1E-11 106.9 10.1 115 416-549 419-556 (591)
87 PRK07710 acetolactate synthase 98.4 9.5E-07 2.1E-11 106.6 9.9 111 416-550 424-549 (571)
88 PRK12474 hypothetical protein; 98.4 1.3E-06 2.9E-11 104.1 10.4 110 416-548 389-518 (518)
89 PRK05778 2-oxoglutarate ferred 98.4 2.5E-06 5.4E-11 95.2 11.8 119 418-556 72-212 (301)
90 PRK07525 sulfoacetaldehyde ace 98.3 9.1E-07 2E-11 107.1 8.9 115 416-550 435-563 (588)
91 PRK06154 hypothetical protein; 98.3 1.3E-06 2.8E-11 105.4 10.1 113 416-548 431-554 (565)
92 PRK08155 acetolactate synthase 98.3 1.4E-06 3.1E-11 104.9 10.5 111 416-549 419-543 (564)
93 TIGR02720 pyruv_oxi_spxB pyruv 98.3 1.6E-06 3.5E-11 104.8 10.4 112 416-548 408-531 (575)
94 cd03376 TPP_PFOR_porB_like Thi 98.3 1.8E-06 3.9E-11 93.2 9.7 112 417-548 63-199 (235)
95 PRK09628 oorB 2-oxoglutarate-a 98.3 1.8E-06 3.8E-11 95.4 9.6 110 419-548 71-200 (277)
96 PRK06112 acetolactate synthase 98.3 1.7E-06 3.6E-11 104.6 10.2 110 416-549 437-560 (578)
97 PRK08199 thiamine pyrophosphat 98.3 2.1E-06 4.5E-11 103.3 10.4 112 416-550 415-539 (557)
98 COG0028 IlvB Thiamine pyrophos 98.3 1.3E-06 2.7E-11 105.0 8.5 112 417-551 409-533 (550)
99 PRK07586 hypothetical protein; 98.3 2E-06 4.2E-11 102.5 9.8 110 416-548 385-514 (514)
100 TIGR01504 glyox_carbo_lig glyo 98.3 1.2E-06 2.6E-11 106.2 7.9 114 416-548 418-554 (588)
101 PRK09124 pyruvate dehydrogenas 98.3 2.5E-06 5.3E-11 103.1 10.6 111 416-549 408-530 (574)
102 COG3958 Transketolase, C-termi 98.3 1.1E-05 2.4E-10 88.2 14.2 191 703-959 19-213 (312)
103 PRK07064 hypothetical protein; 98.3 2.7E-06 5.8E-11 102.0 10.1 111 416-549 405-528 (544)
104 PRK06882 acetolactate synthase 98.3 3.1E-06 6.6E-11 102.2 10.6 113 416-550 421-547 (574)
105 CHL00099 ilvB acetohydroxyacid 98.3 3.3E-06 7.1E-11 102.3 10.8 111 416-549 430-555 (585)
106 TIGR00118 acolac_lg acetolacta 98.2 2.5E-06 5.3E-11 102.7 9.0 111 417-550 413-537 (558)
107 TIGR02418 acolac_catab acetola 98.2 4.6E-06 9.9E-11 100.0 10.8 112 416-550 408-531 (539)
108 TIGR03297 Ppyr-DeCO2ase phosph 98.2 9.6E-06 2.1E-10 92.8 11.8 112 416-550 221-337 (361)
109 PRK08527 acetolactate synthase 98.2 6.5E-06 1.4E-10 99.3 11.0 112 416-550 414-539 (563)
110 PRK06457 pyruvate dehydrogenas 98.2 5.7E-06 1.2E-10 99.5 10.4 111 416-549 396-519 (549)
111 PRK11869 2-oxoacid ferredoxin 98.2 6.9E-06 1.5E-10 90.8 9.9 110 418-548 62-192 (280)
112 TIGR03457 sulphoacet_xsc sulfo 98.2 6.6E-06 1.4E-10 99.5 10.4 114 416-549 430-557 (579)
113 PRK07979 acetolactate synthase 98.2 6.6E-06 1.4E-10 99.4 10.4 114 416-549 421-548 (574)
114 PRK09107 acetolactate synthase 98.1 7.2E-06 1.6E-10 99.6 10.4 112 416-550 430-555 (595)
115 PRK05858 hypothetical protein; 98.1 5.6E-06 1.2E-10 99.4 9.4 110 416-548 407-529 (542)
116 PRK07418 acetolactate synthase 98.1 4.4E-06 9.5E-11 101.8 8.3 111 416-549 434-559 (616)
117 PRK08322 acetolactate synthase 98.1 8.4E-06 1.8E-10 97.8 10.2 111 416-549 406-528 (547)
118 PRK06965 acetolactate synthase 98.1 8.8E-06 1.9E-10 98.7 10.3 112 416-549 437-562 (587)
119 PLN02573 pyruvate decarboxylas 98.1 6.8E-06 1.5E-10 99.5 9.2 112 416-548 428-551 (578)
120 PLN02470 acetolactate synthase 98.1 1.1E-05 2.3E-10 97.9 10.7 111 416-549 426-557 (585)
121 PRK08617 acetolactate synthase 98.1 6.7E-06 1.5E-10 98.8 8.7 112 416-550 414-537 (552)
122 PRK08979 acetolactate synthase 98.1 1.3E-05 2.7E-10 97.0 10.5 113 416-550 421-547 (572)
123 PRK06466 acetolactate synthase 98.0 1.4E-05 3.1E-10 96.5 10.1 113 416-550 423-549 (574)
124 PRK06456 acetolactate synthase 98.0 1.6E-05 3.6E-10 95.9 10.2 112 416-550 421-546 (572)
125 TIGR03394 indol_phenyl_DC indo 98.0 1.3E-05 2.8E-10 96.2 9.2 110 416-548 403-520 (535)
126 TIGR03254 oxalate_oxc oxalyl-C 98.0 2.2E-05 4.8E-10 94.5 11.0 109 416-548 417-537 (554)
127 TIGR02177 PorB_KorB 2-oxoacid: 98.0 1.2E-05 2.6E-10 89.3 7.9 110 418-548 55-185 (287)
128 PRK09259 putative oxalyl-CoA d 98.0 2E-05 4.3E-10 95.2 10.5 108 416-548 424-545 (569)
129 PRK06276 acetolactate synthase 98.0 2.3E-05 5.1E-10 95.0 10.7 110 416-548 419-542 (586)
130 PRK08978 acetolactate synthase 98.0 2.2E-05 4.9E-10 94.3 10.4 112 416-550 401-526 (548)
131 PRK07449 2-succinyl-5-enolpyru 98.0 1E-05 2.2E-10 97.6 7.4 108 417-548 426-548 (568)
132 PRK08611 pyruvate oxidase; Pro 98.0 2.2E-05 4.8E-10 95.0 10.2 112 416-550 408-531 (576)
133 PRK11867 2-oxoglutarate ferred 98.0 2.3E-05 5E-10 87.1 9.2 110 418-547 71-200 (286)
134 PRK07789 acetolactate synthase 98.0 2.3E-05 4.9E-10 95.6 9.8 112 416-549 447-576 (612)
135 TIGR03393 indolpyr_decarb indo 97.9 2.2E-05 4.7E-10 94.3 9.0 110 416-548 404-526 (539)
136 PRK06048 acetolactate synthase 97.9 3.4E-05 7.4E-10 93.1 10.6 112 416-550 414-539 (561)
137 PRK08273 thiamine pyrophosphat 97.9 4.5E-05 9.7E-10 92.8 10.8 112 416-550 415-547 (597)
138 PRK11866 2-oxoacid ferredoxin 97.9 4.2E-05 9E-10 84.7 9.4 110 418-548 61-191 (279)
139 COG3957 Phosphoketolase [Carbo 97.8 0.00025 5.4E-09 85.0 14.8 102 416-531 153-260 (793)
140 PRK07282 acetolactate synthase 97.8 5.5E-05 1.2E-09 91.5 9.2 111 416-550 418-542 (566)
141 TIGR03336 IOR_alpha indolepyru 97.6 0.00019 4.1E-09 87.4 10.1 113 416-548 403-529 (595)
142 cd06586 TPP_enzyme_PYR Pyrimid 97.6 0.00028 6E-09 70.0 9.3 116 752-901 34-154 (154)
143 PLN02980 2-oxoglutarate decarb 97.4 0.00038 8.3E-09 93.6 9.4 110 416-549 759-889 (1655)
144 KOG1185|consensus 97.1 0.0029 6.3E-08 73.5 11.5 110 423-548 433-559 (571)
145 PF09364 XFP_N: XFP N-terminal 96.9 0.0084 1.8E-07 68.0 12.0 108 417-534 141-250 (379)
146 COG3961 Pyruvate decarboxylase 96.5 0.0095 2.1E-07 70.1 8.9 114 416-549 411-535 (557)
147 KOG4166|consensus 95.6 0.018 3.9E-07 66.0 6.0 111 418-549 526-647 (675)
148 COG1013 PorB Pyruvate:ferredox 95.2 0.22 4.8E-06 56.0 12.7 147 419-588 73-241 (294)
149 COG3960 Glyoxylate carboligase 94.3 0.057 1.2E-06 60.4 5.2 123 414-556 417-563 (592)
150 cd03377 TPP_PFOR_PNO Thiamine 93.8 0.35 7.5E-06 55.7 10.3 94 445-548 153-266 (365)
151 COG2609 AceE Pyruvate dehydrog 93.1 12 0.00027 46.3 21.9 170 753-959 562-745 (887)
152 PF01855 POR_N: Pyruvate flavo 91.5 0.12 2.7E-06 56.0 2.7 111 758-905 41-158 (230)
153 KOG1184|consensus 90.2 0.27 5.9E-06 58.2 4.1 113 416-548 415-538 (561)
154 cd07039 TPP_PYR_POX Pyrimidine 90.1 2.2 4.8E-05 43.8 10.2 104 424-546 53-156 (164)
155 TIGR03336 IOR_alpha indolepyru 88.9 0.79 1.7E-05 56.4 6.9 113 761-909 54-171 (595)
156 cd07038 TPP_PYR_PDC_IPDC_like 88.5 2.3 5E-05 43.5 9.0 105 424-546 50-160 (162)
157 TIGR02176 pyruv_ox_red pyruvat 88.2 6.2 0.00014 52.4 14.7 94 444-548 952-1066(1165)
158 PRK08366 vorA 2-ketoisovalerat 88.1 1.5 3.3E-05 51.2 8.3 115 758-909 54-174 (390)
159 PRK09622 porA pyruvate flavodo 87.3 1.1 2.5E-05 52.5 6.6 107 761-906 64-180 (407)
160 PF02776 TPP_enzyme_N: Thiamin 87.2 3.3 7.1E-05 42.5 9.2 106 423-546 53-159 (172)
161 TIGR03710 OAFO_sf 2-oxoacid:ac 87.1 2.2 4.7E-05 52.3 9.1 117 761-909 245-368 (562)
162 PRK08659 2-oxoglutarate ferred 86.9 1.3 2.8E-05 51.5 6.8 120 755-905 51-175 (376)
163 cd06586 TPP_enzyme_PYR Pyrimid 86.5 3.7 8.1E-05 40.5 8.9 104 423-546 49-152 (154)
164 cd07035 TPP_PYR_POX_like Pyrim 85.5 6 0.00013 39.5 9.9 92 444-546 61-153 (155)
165 cd07034 TPP_PYR_PFOR_IOR-alpha 85.0 4.5 9.8E-05 40.7 8.8 90 445-546 67-158 (160)
166 PRK07119 2-ketoisovalerate fer 84.2 4.4 9.5E-05 46.8 9.3 112 755-904 51-174 (352)
167 PRK08659 2-oxoglutarate ferred 83.2 7.9 0.00017 45.2 10.9 109 423-557 62-178 (376)
168 COG4231 Indolepyruvate ferredo 82.5 5.1 0.00011 49.1 9.1 107 419-546 431-551 (640)
169 PRK08367 porA pyruvate ferredo 80.2 4.8 0.0001 47.3 7.7 108 760-906 57-174 (394)
170 PRK09627 oorA 2-oxoglutarate-a 79.7 6.5 0.00014 45.9 8.6 112 761-904 55-173 (375)
171 cd07037 TPP_PYR_MenD Pyrimidin 79.4 6.3 0.00014 40.6 7.4 106 424-546 50-160 (162)
172 TIGR03845 sulfopyru_alph sulfo 77.1 12 0.00027 38.3 8.7 89 447-546 62-152 (157)
173 TIGR03845 sulfopyru_alph sulfo 77.1 7.7 0.00017 39.7 7.3 110 759-904 40-157 (157)
174 COG4231 Indolepyruvate ferredo 76.0 21 0.00045 44.1 11.4 173 753-963 58-272 (640)
175 PF01855 POR_N: Pyruvate flavo 73.9 27 0.00059 38.1 10.8 87 456-556 67-161 (230)
176 PRK08611 pyruvate oxidase; Pro 73.5 17 0.00038 44.5 10.3 95 441-546 67-161 (576)
177 PRK08978 acetolactate synthase 73.4 13 0.00027 45.3 9.0 96 441-547 62-158 (548)
178 PRK07979 acetolactate synthase 73.0 15 0.00033 45.0 9.6 96 441-547 66-162 (574)
179 PRK09627 oorA 2-oxoglutarate-a 72.8 21 0.00046 41.7 10.3 108 423-557 61-177 (375)
180 PRK06725 acetolactate synthase 72.8 14 0.00029 45.5 9.2 96 441-547 76-172 (570)
181 PRK06456 acetolactate synthase 72.4 16 0.00034 44.7 9.6 96 441-547 67-163 (572)
182 PRK07064 hypothetical protein; 71.9 21 0.00045 43.4 10.4 107 424-547 56-164 (544)
183 COG3962 Acetolactate synthase 71.8 15 0.00033 43.7 8.5 46 497-548 529-574 (617)
184 PRK08155 acetolactate synthase 71.8 16 0.00035 44.6 9.5 105 424-547 66-171 (564)
185 PRK06276 acetolactate synthase 71.7 16 0.00035 44.9 9.5 96 441-547 62-158 (586)
186 PLN02470 acetolactate synthase 71.6 15 0.00032 45.2 9.1 96 441-547 75-171 (585)
187 PRK06466 acetolactate synthase 71.5 16 0.00035 44.8 9.4 105 424-547 57-162 (574)
188 PRK07789 acetolactate synthase 71.3 16 0.00034 45.2 9.3 96 441-547 93-189 (612)
189 PRK07525 sulfoacetaldehyde ace 70.7 19 0.00041 44.3 9.8 96 441-547 67-162 (588)
190 TIGR00118 acolac_lg acetolacta 70.2 20 0.00043 43.7 9.8 96 441-547 63-159 (558)
191 PRK07119 2-ketoisovalerate fer 69.7 33 0.00072 39.7 10.9 105 423-556 62-177 (352)
192 TIGR03457 sulphoacet_xsc sulfo 69.6 20 0.00044 43.9 9.7 96 441-547 63-158 (579)
193 TIGR03254 oxalate_oxc oxalyl-C 69.3 21 0.00045 43.5 9.7 98 441-547 64-162 (554)
194 PF03894 XFP: D-xylulose 5-pho 69.2 27 0.00058 36.8 8.9 150 708-887 16-177 (179)
195 PRK06457 pyruvate dehydrogenas 69.1 24 0.00052 43.0 10.1 105 424-547 54-158 (549)
196 PRK06112 acetolactate synthase 68.2 23 0.00051 43.3 9.9 96 441-547 73-169 (578)
197 COG0028 IlvB Thiamine pyrophos 68.0 24 0.00051 43.4 9.7 96 440-546 62-158 (550)
198 PRK08979 acetolactate synthase 67.6 21 0.00046 43.7 9.3 95 441-546 66-161 (572)
199 PRK07586 hypothetical protein; 67.5 21 0.00045 43.1 9.0 96 441-547 63-159 (514)
200 PRK08273 thiamine pyrophosphat 66.7 21 0.00046 44.0 9.1 96 441-547 66-162 (597)
201 PRK08199 thiamine pyrophosphat 66.5 26 0.00055 42.8 9.7 96 441-547 70-166 (557)
202 PRK07418 acetolactate synthase 66.2 29 0.00063 43.0 10.1 96 441-547 84-180 (616)
203 PRK08322 acetolactate synthase 65.0 29 0.00063 42.2 9.7 96 441-547 62-158 (547)
204 PRK08266 hypothetical protein; 64.7 30 0.00064 42.0 9.7 96 441-547 67-166 (542)
205 PRK12474 hypothetical protein; 64.6 31 0.00066 41.8 9.7 105 424-547 58-163 (518)
206 PRK06882 acetolactate synthase 63.9 31 0.00068 42.2 9.8 96 441-547 66-162 (574)
207 PRK11269 glyoxylate carboligas 62.5 35 0.00076 42.0 9.9 106 424-547 57-163 (591)
208 CHL00099 ilvB acetohydroxyacid 62.1 32 0.0007 42.3 9.4 96 441-547 75-171 (585)
209 PRK07710 acetolactate synthase 62.1 32 0.00069 42.2 9.4 96 441-547 77-173 (571)
210 COG1165 MenD 2-succinyl-6-hydr 61.9 22 0.00047 43.3 7.6 110 421-551 427-548 (566)
211 PRK09259 putative oxalyl-CoA d 61.7 35 0.00077 41.8 9.7 98 441-547 71-169 (569)
212 TIGR01504 glyox_carbo_lig glyo 61.1 38 0.00083 41.8 9.8 95 442-547 67-162 (588)
213 TIGR02720 pyruv_oxi_spxB pyruv 60.8 39 0.00085 41.5 9.8 96 441-547 62-157 (575)
214 PRK13030 2-oxoacid ferredoxin 60.7 23 0.0005 47.0 8.1 112 416-546 468-600 (1159)
215 TIGR03297 Ppyr-DeCO2ase phosph 60.2 21 0.00045 41.6 6.9 115 760-905 33-156 (361)
216 PRK06965 acetolactate synthase 60.0 43 0.00092 41.3 10.0 102 424-547 74-179 (587)
217 PRK08527 acetolactate synthase 59.9 42 0.00092 41.0 9.9 96 441-547 65-161 (563)
218 cd07034 TPP_PYR_PFOR_IOR-alpha 59.6 56 0.0012 32.7 9.2 115 752-899 41-158 (160)
219 PRK06048 acetolactate synthase 58.9 37 0.0008 41.5 9.2 96 441-547 69-165 (561)
220 COG1303 Uncharacterized protei 58.6 20 0.00044 36.9 5.6 54 492-548 13-66 (179)
221 PRK09107 acetolactate synthase 58.4 38 0.00083 41.8 9.2 96 441-547 73-169 (595)
222 PRK07282 acetolactate synthase 58.1 40 0.00086 41.4 9.2 96 441-547 72-168 (566)
223 PRK07524 hypothetical protein; 57.8 59 0.0013 39.5 10.6 98 441-547 63-162 (535)
224 PRK09193 indolepyruvate ferred 57.1 38 0.00083 45.0 9.1 111 417-546 482-614 (1165)
225 PRK05858 hypothetical protein; 56.3 50 0.0011 40.2 9.6 105 424-547 57-162 (542)
226 PRK06546 pyruvate dehydrogenas 54.3 53 0.0012 40.4 9.5 94 442-546 66-159 (578)
227 PRK08617 acetolactate synthase 54.0 55 0.0012 39.9 9.5 96 441-547 66-162 (552)
228 TIGR02176 pyruv_ox_red pyruvat 52.9 48 0.001 44.4 9.2 106 760-904 58-172 (1165)
229 PRK06154 hypothetical protein; 52.8 45 0.00099 40.9 8.5 93 442-547 81-174 (565)
230 PRK09124 pyruvate dehydrogenas 51.7 70 0.0015 39.3 9.9 34 863-898 493-526 (574)
231 TIGR03710 OAFO_sf 2-oxoacid:ac 51.0 67 0.0014 39.6 9.5 89 456-556 268-366 (562)
232 KOG2733|consensus 50.6 35 0.00075 39.7 6.4 85 444-554 5-99 (423)
233 PRK07092 benzoylformate decarb 50.0 71 0.0015 38.8 9.5 105 424-547 63-169 (530)
234 TIGR03394 indol_phenyl_DC indo 49.6 67 0.0015 39.2 9.2 98 441-547 62-163 (535)
235 TIGR02418 acolac_catab acetola 48.5 84 0.0018 38.2 9.8 96 441-547 60-156 (539)
236 KOG4166|consensus 48.4 59 0.0013 38.5 7.8 28 519-546 220-248 (675)
237 PLN02573 pyruvate decarboxylas 45.8 61 0.0013 40.0 8.1 95 443-546 79-179 (578)
238 PRK05647 purN phosphoribosylgl 43.3 1.1E+02 0.0024 32.6 8.7 60 444-521 3-62 (200)
239 PRK08327 acetolactate synthase 42.8 78 0.0017 38.9 8.4 98 441-547 74-179 (569)
240 COG3960 Glyoxylate carboligase 42.3 50 0.0011 37.9 6.0 112 417-548 50-164 (592)
241 TIGR00173 menD 2-succinyl-5-en 42.1 58 0.0013 38.5 6.9 97 441-546 62-163 (432)
242 COG0674 PorA Pyruvate:ferredox 40.3 81 0.0017 36.8 7.6 110 760-907 54-171 (365)
243 COG0674 PorA Pyruvate:ferredox 39.6 1.1E+02 0.0024 35.8 8.5 85 456-552 78-169 (365)
244 PF04273 DUF442: Putative phos 39.3 68 0.0015 31.1 5.7 48 498-548 45-95 (110)
245 PRK08367 porA pyruvate ferredo 38.8 2.4E+02 0.0053 33.3 11.3 87 456-555 81-175 (394)
246 PRK09622 porA pyruvate flavodo 35.4 2.3E+02 0.0049 33.7 10.4 87 456-554 87-180 (407)
247 PRK13010 purU formyltetrahydro 35.4 1.5E+02 0.0033 33.5 8.5 56 441-520 92-151 (289)
248 TIGR00655 PurU formyltetrahydr 34.8 1.6E+02 0.0034 33.3 8.5 57 440-520 82-142 (280)
249 PF09851 SHOCT: Short C-termin 31.3 61 0.0013 24.4 3.1 25 578-603 5-29 (31)
250 PF02776 TPP_enzyme_N: Thiamin 30.9 83 0.0018 32.2 5.2 122 752-907 39-167 (172)
251 PRK13029 2-oxoacid ferredoxin 30.8 1.3E+02 0.0029 40.2 8.0 112 416-546 495-628 (1186)
252 PLN02980 2-oxoglutarate decarb 27.8 1.2E+02 0.0025 42.5 7.1 105 424-547 354-465 (1655)
253 cd07035 TPP_PYR_POX_like Pyrim 26.8 2.1E+02 0.0046 28.4 7.2 112 752-900 34-154 (155)
254 PLN02331 phosphoribosylglycina 25.2 2.2E+02 0.0048 30.7 7.3 54 445-520 2-59 (207)
255 TIGR00232 tktlase_bact transke 24.7 2.7E+02 0.0058 35.2 8.9 114 403-546 395-512 (653)
256 PF10925 DUF2680: Protein of u 24.2 1.5E+02 0.0032 25.9 4.6 32 579-610 21-52 (59)
257 PTZ00089 transketolase; Provis 23.3 3E+02 0.0066 34.8 9.1 113 404-546 403-519 (661)
258 PF02779 Transket_pyr: Transke 22.8 2.8E+02 0.006 28.6 7.4 117 405-546 49-170 (178)
259 PHA00456 hypothetical protein 22.8 61 0.0013 25.3 1.8 14 51-65 18-31 (34)
260 TIGR03393 indolpyr_decarb indo 20.7 2.9E+02 0.0063 33.7 8.0 28 869-898 496-523 (539)
No 1
>KOG0450|consensus
Probab=100.00 E-value=1.5e-245 Score=2044.33 Aligned_cols=878 Identities=68% Similarity=1.119 Sum_probs=805.9
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCcchHhHHHHHhccCCCCCCCCCCCCCChhHHHHhhhccCCCCCCCCC
Q psy8742 36 RQQSSVPAAEPFLNGASANYVEEMYRSWQEDPKSVHASWDAFFRSSSAGALPEDPKSVHASWDAFFRSSSAGALPGQAYQ 115 (968)
Q Consensus 36 ~~~~~~~~~~s~l~g~Na~YIEelY~~yl~DP~SVd~sW~~~F~~l~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~ 115 (968)
|........++||+|+++.||||||+.|++||+|||.||++||++.+.++. ++.++++
T Consensus 39 r~~~~~~~td~Fl~g~ss~YveEmy~AW~~dP~SVh~SWDayFrn~~~~~~----------------------~~~~a~~ 96 (1017)
T KOG0450|consen 39 RSVAASVATDPFLSGTSSSYVEEMYRAWLEDPNSVHKSWDAYFRNVSAGAP----------------------PPAQASQ 96 (1017)
T ss_pred ccccCcccccccccCcchHHHHHHHHHHHcCCchhhhhHHHHHHhcccCCC----------------------Ccccccc
Confidence 334566678999999999999999999999999999999996655544321 1223344
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCCCCCchhHHHHhHHHHHHHHHHHHHHccccccccCCCCCCccCCCC----CCC
Q psy8742 116 PPPTLAPPSGNQVPISSLAPFVGGASSHFNEPLSEKIIDDHLAVQALIRSYQIRGHHIAQLDPLGIQAADLDD----KHP 191 (968)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~li~ayr~~GH~~A~ldPL~~~~~~~~~----~~~ 191 (968)
+|+..... +..+...... . -....+.+.+.++++|+.||+||+.+||..|+|||||+...+.+. ..+
T Consensus 97 ~p~~~~~~----~~~t~~~~~~--~---~~t~~s~~~v~~hl~vqlLiRaYQirGH~~A~LDPLGi~~~~~~~~~p~~i~ 167 (1017)
T KOG0450|consen 97 APLSRSAA----VAGTQSAVAA--R---PNTGISDKTVEDHLKVQLLIRAYQIRGHHKAKLDPLGINDADLDSSVPADIP 167 (1017)
T ss_pred CCCccccc----cccccccccc--c---cCCCcccccHHHHHHHHHHHHHHHhcccccccCCccccccccccccCCCCCC
Confidence 44322110 0000000000 0 000112356789999999999999999999999999985443221 123
Q ss_pred cccccccCCCCChhHHHHhhhhhccCCCCcccccceeccCCcccccCCCCCCCHHHHHHHHHHHccCcccccccccCCHH
Q psy8742 192 QELIFHNFWPSSISYAQQLQHKVADMMQKETDMEKVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLE 271 (968)
Q Consensus 192 ~~l~~~~~~~~~~~~~~~~~~~~~~~gl~~~Dl~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~Ycg~ig~E~~hi~~~e 271 (968)
++| .+.+| ||+|.|||++|.++..+|++++++.+|||||+++|+++||++||+|||||.|.+
T Consensus 168 ~~~--------~l~~Y----------gf~E~DLDref~L~~t~Fi~~~~~~ltLreIl~rlE~~YC~~igvEfmhI~~~e 229 (1017)
T KOG0450|consen 168 EEL--------TLAFY----------GFTEADLDREFHLPTTTFIGGGESSLTLREILRRLEKAYCGSIGVEFMHINDLE 229 (1017)
T ss_pred hhh--------hhhhc----------CCchhhccceeccCCcccccCCCccccHHHHHHHHHHHhhccceeEEEeeCcHH
Confidence 445 78899 999999999999988899998888999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCcchhhHHHHHHHHHHhhhcCCCcEEecc
Q psy8742 272 QCNWIRQKLETPGIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTELGVESVVMGM 351 (968)
Q Consensus 272 ~r~Wl~~~~E~~~~~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg~eG~Ea~i~~l~~li~~a~~~g~~divigm 351 (968)
+++||++|||++....++.|+++-||.+|+++..||+||.+||+..||||+||||++||||.++|+.+..+|++++|+||
T Consensus 230 qcnWir~k~EtP~~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRFGLEGcE~lIP~mK~iiDrS~elGVe~iviGM 309 (1017)
T KOG0450|consen 230 QCNWIRQKFETPGPMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFGLEGCEVLIPAMKTIIDRSSELGVESIVIGM 309 (1017)
T ss_pred HhHHHHHhccCCCccccCHHHHHHHHHHHHHhhHHHHHHhhhCCccccccccchhhhhhHHHHHhhhhhhcCchheEecC
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhH
Q psy8742 352 PHRGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRA 431 (968)
Q Consensus 352 ~HRgr~~~La~g~gkp~~~ifae~g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A 431 (968)
+||||+|+|+|+++||+++||.||.+..+...|+||||||||..-.+.+...||.|++++|+||||||++.||++|++||
T Consensus 310 pHRGRLNvL~NVvRKpl~qIfseF~g~~~~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA 389 (1017)
T KOG0450|consen 310 PHRGRLNVLANVVRKPLEQIFSEFSGLEAADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRA 389 (1017)
T ss_pred CccchhHHHHHHHhhHHHHHHHhccCCCCCcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHH
Confidence 99999999999999999999999944555556999999999998888776689999999999999999999999999999
Q ss_pred hHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCC
Q psy8742 432 EQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNA 511 (968)
Q Consensus 432 ~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~gi 511 (968)
.|++++|.++++++.|++||||||+|||+|||||+|+.||+|+||||||||+||||||||+|..+||++||||+||..++
T Consensus 390 ~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~a 469 (1017)
T KOG0450|consen 390 EQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNA 469 (1017)
T ss_pred HHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCC
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCC
Q psy8742 512 PIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVV 591 (968)
Q Consensus 512 P~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~ 591 (968)
||||||+||||||..+|+.|.|||.+|++||+||++|||++||||.|+|+||||.||+.|+++++.++.|.++|+.+|.+
T Consensus 470 PIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtv 549 (1017)
T KOG0450|consen 470 PIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTV 549 (1017)
T ss_pred CeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCccccchHHHHHHHcCCcHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCC---CCccCCCCCCHHHHHHHHhhhcCCCCCCch
Q psy8742 592 TEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKD---PLKVSTTGINENTLVHIGKRFSSPPPNATE 668 (968)
Q Consensus 592 t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~ 668 (968)
+++++++..+.+...+++|++.++.+......+|++.+|.+++.|.. ..+.++||+..+.|+.||+.+.++| |+
T Consensus 550 s~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~P---E~ 626 (1017)
T KOG0450|consen 550 SQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVP---EG 626 (1017)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhcCCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccCC---cc
Confidence 99999999999999999999999998766668999999999998642 2234579999999999999999999 99
Q ss_pred hhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCC
Q psy8742 669 FVIHKGIERILKARLQMVESRTVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYP 748 (968)
Q Consensus 669 f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~ 748 (968)
|.+|+.|+|+++.|.+|+++..||||+||+|||||||.||.+||||||||+||||||||+|||||+++..+|.||++|.+
T Consensus 627 F~~Hrgl~Ril~~R~~mi~~~~iDwal~EalAFgsLl~EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~ 706 (1017)
T KOG0450|consen 627 FKIHRGLKRILKNRAQMIKSEGVDWALAEALAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWP 706 (1017)
T ss_pred cchhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhcCceEEeecccccccccccchhhhcccccCcceecchhhcCC
Confidence 99999999999999999999889999999999999999999999999999999999999999999998789999999999
Q ss_pred CCCCcEeecCCcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccCCCCCc
Q psy8742 749 DQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGP 828 (968)
Q Consensus 749 ~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~~g~Gp 828 (968)
.|+++.|+||.|||+||||||+||||++|+.|||||||||||+|+||+||||||++|++||.+++||||+|||||+|+||
T Consensus 707 ~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWEAQFGDFaNtAQ~IiDQFIssGqaKW~rqsGlVllLPHGyeG~GP 786 (1017)
T KOG0450|consen 707 NQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWEAQFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPHGYEGMGP 786 (1017)
T ss_pred CCCceeeeccchhhhheecceecccccCCCceEEeehhhccccccchhhHHhHhccchhhhhhhcCeEEEccCCcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCC
Q psy8742 829 EHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPE 908 (968)
Q Consensus 829 eHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~ 908 (968)
||||+|+|||||||+|||+.+|. ..+++.+|++++||+||||||||||||+|||||+++||||||+|+||+|||||.
T Consensus 787 EHSSaR~ERfLQm~nddp~~~p~---~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~ 863 (1017)
T KOG0450|consen 787 EHSSARPERFLQMSNDDPDVFPD---EEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPE 863 (1017)
T ss_pred ccccccHHHHHHhccCCCccCCc---ccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCcc
Confidence 99999999999999999999991 223789999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCceEEeccCCCccccCCCCccEEEEecchhHHHHHHHHHhcCCCCCccC
Q psy8742 909 AKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAV 968 (968)
Q Consensus 909 a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~~~~~~~vai 968 (968)
|+|+++||.+|+.||.||+|......++++|||||||||||||||.++|++.++.++|||
T Consensus 864 arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~~~~vAi 923 (1017)
T KOG0450|consen 864 ARSSFSEFDEGTGFQRVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKERKEVGLEGDVAI 923 (1017)
T ss_pred ccCCHHHhccCCCCceeccccccccCChhhceEEEEecceEehhhhHHHHhcCcccceeE
Confidence 999999999999999999997766778999999999999999999999999997789997
No 2
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=5.8e-221 Score=1914.73 Aligned_cols=754 Identities=47% Similarity=0.782 Sum_probs=705.9
Q ss_pred HHhHHHHHHHHHHHHHHccccccccCCCCCCccCCCCCCCcccccccCCCCChhHHHHhhhhhccCCCCcccccceeccC
Q psy8742 152 IIDDHLAVQALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQELIFHNFWPSSISYAQQLQHKVADMMQKETDMEKVFKLP 231 (968)
Q Consensus 152 ~~~~~~~v~~li~ayr~~GH~~A~ldPL~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gl~~~Dl~~~~~~~ 231 (968)
.+.|+.+|++||+|||.||||.|++|||++.. +.+|+| ++.+| |||.+|||++|.++
T Consensus 382 ~i~K~arv~elI~ayR~rGHLmAd~dPL~~~~-----r~hpdL--------d~~~h----------GLTlWDLdR~f~~g 438 (1228)
T PRK12270 382 EVDKNARVMELIHAYRVRGHLMADTDPLEYRQ-----RSHPDL--------DVLTH----------GLTLWDLDREFPVG 438 (1228)
T ss_pred hhhHHHHHHHHHHHHHhccchhccCCcccccc-----cCCCCC--------Ccccc----------CCCHHhcCceeecC
Confidence 45689999999999999999999999999854 367999 99999 99999999999875
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHccCcccccccccCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy8742 232 STTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLETPGIMNMSEDQKRLILARLTRATGFEAFLA 311 (968)
Q Consensus 232 ~~~~~~~~~~~~~l~~i~~~L~~~Ycg~ig~E~~hi~~~e~r~Wl~~~~E~~~~~~ls~e~~~~il~~M~~aR~fE~~l~ 311 (968)
+| + ++..|+||||+..|+++||++||+|||||.|++||.|||+|||.. ...++.++.++|+++|..+++||.||+
T Consensus 439 --gf-~-g~~~m~LrdiL~~LRdsYcr~vg~EymhI~dpeqr~W~Q~rvE~~-~~kp~~~eq~~iL~~LnaaEaFEtFLq 513 (1228)
T PRK12270 439 --GF-G-GKERMKLRDILGVLRDSYCRTVGIEYMHIQDPEQRRWLQERVERP-HEKPTREEQKRILSKLNAAEAFETFLQ 513 (1228)
T ss_pred --Cc-C-CcccccHHHHHHHHHHHHhhhheeeeeecCCHHHHHHHHHHhhCC-CCCCCHHHHHHHHHHhhhHHHHHHHHh
Confidence 33 3 467799999999999999999999999999999999999999975 567899999999999999999999999
Q ss_pred HHHhccCccccCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHHHhcCCCHHHHHHHh-cCCCCC-CCCCCCcc
Q psy8742 312 RKWSSEKRFGLEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQF-AALEAA-DDGSGDVK 389 (968)
Q Consensus 312 ~~~~~~Krfg~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La~g~gkp~~~ifae~-g~~~~~-~~G~GdV~ 389 (968)
+||.+|||||+||.|++||.|+++++.|+..|.++++|||+||||+|||+|++|||+.+||+|| |+.++. ..|+||||
T Consensus 514 tkyvGqkRFslEG~Es~iplld~~~~~aa~~~l~evvigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVK 593 (1228)
T PRK12270 514 TKYVGQKRFSLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVK 593 (1228)
T ss_pred hhcccceeeeecchhhHHHHHHHHHHHHHhcCCceEEecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999 766654 47999999
Q ss_pred cccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCC-CCceEEEEEEeCCccccCcchHHHHHHhC
Q psy8742 390 YHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDG-EGKKVMSILLHGDAAFCGQGVVFETFHLS 468 (968)
Q Consensus 390 ~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~-~~~~~v~v~~hGDgAfsgQGvv~EaLNlA 468 (968)
||||....... ..|..+.+++++||||||+++||..|++||+|+..+.+ .+-.+++|++||||||+|||+|+||||||
T Consensus 594 YHlG~eG~~~~-~~g~~~~v~laaNPSHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla 672 (1228)
T PRK12270 594 YHLGAEGTFTQ-MFGDEIKVSLAANPSHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLS 672 (1228)
T ss_pred eeccCceeeec-cCCCeeEEEEecCchhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHH
Confidence 99998876443 46778999999999999999999999999999976532 35689999999999999999999999999
Q ss_pred CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 469 DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 469 ~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
+|++|+||||||||+||||||||++..+||+.|++|+||++++|+|||||||||||++++++|++||++|+||||||++|
T Consensus 673 ~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvc 752 (1228)
T PRK12270 673 QLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVC 752 (1228)
T ss_pred hccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCC
Q psy8742 549 YRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDS 628 (968)
Q Consensus 549 YR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~ 628 (968)
||++||||+|||++|||.||+.|..++++.++|.+.|+.+|.+|++|++++.++++++|+.+|++.++.....+...
T Consensus 753 YRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~~~~~~--- 829 (1228)
T PRK12270 753 YRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKKPPEPP--- 829 (1228)
T ss_pred EeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999987654332210
Q ss_pred CCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhhhhcC
Q psy8742 629 PWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSLLKEG 708 (968)
Q Consensus 629 ~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sLl~eg 708 (968)
............++|.++.+.|+.|+...+.+| |+|++||+|++++++|.+|+..|.||||++|+|||||||.||
T Consensus 830 --~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~P---egFt~Hpkl~~~l~~R~~m~~~g~iDWa~gEllAfGsLl~eG 904 (1228)
T PRK12270 830 --ESVESDQGPPAGVDTAVSAEVLERIGDAHVNLP---EGFTVHPKLKPLLEKRREMAREGGIDWAFGELLAFGSLLLEG 904 (1228)
T ss_pred --CCccccccCCCCCCCCCCHHHHHHHHHHhccCC---CCCccChhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcC
Confidence 001111112234689999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCccccccchhh
Q psy8742 709 IHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFG 788 (968)
Q Consensus 709 ~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE~qfg 788 (968)
.+|||+|||+.||||+||||||||.+|+ ..|.||++|.+.+|+|.|+||+|||+|+||||||||+++|.+|||||||||
T Consensus 905 ~~VRL~GQDsrRGTF~QRHavl~D~~tg-~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYSv~~pdaLVlWEAQFG 983 (1228)
T PRK12270 905 TPVRLSGQDSRRGTFSQRHAVLIDRETG-EEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFG 983 (1228)
T ss_pred ceeeeeccccCCcceeeeeEEEecCCCC-cccCcHhhcCCCcceEEEecchhhHHHhhccceeeecCCCcceeeehhhhc
Confidence 9999999999999999999999999986 699999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhHHHHHHHhhhccccccccCcEEEcCccCCCCCcccCCChHHHHhcccCCCCcccccccchhhhhhhcccCCCe
Q psy8742 789 DFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINW 868 (968)
Q Consensus 789 DF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~ 868 (968)
||+||||+|||+||+|||.||+++|+|||||||||+||||+|||+||||||||||++ ||
T Consensus 984 DF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPHGyEGQGPdHSSaRiERfLqlcAe~---------------------nm 1042 (1228)
T PRK12270 984 DFANGAQTIIDEFISSGEAKWGQRSGVVLLLPHGYEGQGPDHSSARIERFLQLCAEG---------------------NM 1042 (1228)
T ss_pred ccccchHHHHHHHHhhhHhhhccccceEEEccCCcCCCCCCcchHHHHHHHHhhccC---------------------Ce
Confidence 999999999999999999999999999999999999999999999999999999997 99
Q ss_pred EEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccccCCCCccEEEEecch
Q psy8742 869 IIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGK 948 (968)
Q Consensus 869 ~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~v~rvilcsGk 948 (968)
.|++|||||+||||||||..+..|+|||||+||+|||+|.|+|+++||++| +|++||+|+.. .++++||||||||||
T Consensus 1043 ~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~vedFT~g-~F~pVi~D~~~--~~~~~V~RVlLcSGK 1119 (1228)
T PRK12270 1043 TVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDVEDFTEG-KFRPVIDDPTV--DDGAKVRRVLLCSGK 1119 (1228)
T ss_pred EEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCCHHHhccC-CceecCCCCCC--CCccceeEEEEEcch
Confidence 999999999999999999999999999999999999999999999999976 59999999863 456789999999999
Q ss_pred hHHHHHHHHHhcCCCCCccC
Q psy8742 949 VYYDLIKARNDNNLGDKIAV 968 (968)
Q Consensus 949 vyydl~~~r~~~~~~~~vai 968 (968)
|||||+++|++++. +||||
T Consensus 1120 vYYdL~a~R~k~~~-~d~AI 1138 (1228)
T PRK12270 1120 LYYDLAARREKDGR-DDTAI 1138 (1228)
T ss_pred hHHHHHHHHHhcCC-CceEE
Confidence 99999999999997 68997
No 3
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.5e-213 Score=1864.95 Aligned_cols=810 Identities=49% Similarity=0.827 Sum_probs=749.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcchHhHHHHHhccCCCCCCCCCCCCCChhHHHHhhhccCCCCCCCCCCCCCCCCC
Q psy8742 44 AEPFLNGASANYVEEMYRSWQEDPKSVHASWDAFFRSSSAGALPEDPKSVHASWDAFFRSSSAGALPGQAYQPPPTLAPP 123 (968)
Q Consensus 44 ~~s~l~g~Na~YIEelY~~yl~DP~SVd~sW~~~F~~l~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~ 123 (968)
+.++|+|+|+.|||+||++|++||+|||++|+.||+.++.. +..+|......
T Consensus 6 ~~~~l~g~n~~~ie~ly~~~~~~p~svd~~w~~~F~~~~~~------------~~~~~~~~~~~---------------- 57 (906)
T COG0567 6 NTSYLSGANAAYIEELYEQYLQDPNSVDPSWQEFFDGLSDP------------VRESFRRLAKK---------------- 57 (906)
T ss_pred ccccccCcchHHHHHHHHHHhhCCcccCHHHHHHHHhcCcc------------hhhhhhhhccc----------------
Confidence 46899999999999999999999999999999988877542 22233322111
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCchhHHHHhHHHHHHHHHHHHHHccccccccCCCCCCccCCCCCCCcccccccCCCCC
Q psy8742 124 SGNQVPISSLAPFVGGASSHFNEPLSEKIIDDHLAVQALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQELIFHNFWPSS 203 (968)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~li~ayr~~GH~~A~ldPL~~~~~~~~~~~~~~l~~~~~~~~~ 203 (968)
. . ......++.+|++||+|||.+||+.|+||||++ + ++.+++| +
T Consensus 58 -----------~---~---------~~~~~~~~~~~~~li~ayR~~Ghl~a~ldPL~~-~----~~~~~~l--------~ 101 (906)
T COG0567 58 -----------G---N---------DPDATLKSVKVLRLINAYRSRGHLHANLDPLGL-K----RPDVPEL--------D 101 (906)
T ss_pred -----------c---c---------chhhhHHHHHHHHHHHHHHHhchhhhcCCcccC-C----CCCcccc--------C
Confidence 0 0 013456788999999999999999999999996 2 2467889 9
Q ss_pred hhHHHHhhhhhccCCCCcccccceeccCCcccccCCCCCCCHHHHHHHHHHHccCcccccccccCCHHHHHHHHHHhcCC
Q psy8742 204 ISYAQQLQHKVADMMQKETDMEKVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLETP 283 (968)
Q Consensus 204 ~~~~~~~~~~~~~~gl~~~Dl~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~Ycg~ig~E~~hi~~~e~r~Wl~~~~E~~ 283 (968)
+++| |||++||++.|++.. .+. ++..+||+|+++.|+++|||+||+|||||.|.++|.||++|||+
T Consensus 102 ~~~~----------glt~~d~~~~~~~~~-~~~--~~~~~~l~e~~~~l~~~Ycgsig~E~~hi~~~~~~~Wl~~riE~- 167 (906)
T COG0567 102 PEFH----------GLTEADLDETFNIGD-GFL--GKETMTLRELIEILKKTYCGSIGVEYMHISDPEEKRWLQERIES- 167 (906)
T ss_pred Hhhc----------CCCHHHHhccccccc-ccc--ccccccHHHHHHHHHHHhccceeeeeeccCCHHHHHHHHHHHhc-
Confidence 9999 999999999997432 233 46779999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHHHh
Q psy8742 284 GIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANV 363 (968)
Q Consensus 284 ~~~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La~g 363 (968)
..+.++.|+++.+|++|+.++.||+||+++|+++||||+||+|++||+|+++|+.|...|++++|+||+||||+|+|+|+
T Consensus 168 ~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRFslEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL~nv 247 (906)
T COG0567 168 GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFSLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVLVNV 247 (906)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhcCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCCCCce
Q psy8742 364 CRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKK 443 (968)
Q Consensus 364 ~gkp~~~ifae~g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~~~~ 443 (968)
+|||++.||.||.+......++||||||+|.++++.+ .|+.++++|++||||||+++||+.|.+||+|.+..+....+
T Consensus 248 lgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~--~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~k 325 (906)
T COG0567 248 LGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQT--DGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERDK 325 (906)
T ss_pred hCCCHHHHHHHhCCCCCCCCccccccccccccccccc--CCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCccce
Confidence 9999999999993333333459999999999987654 55689999999999999999999999999999888777779
Q ss_pred EEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCHHH
Q psy8742 444 VMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEA 523 (968)
Q Consensus 444 ~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~eA 523 (968)
+++|++|||+||+|||+|+|+|||++++||+|||+||||+||||||||.|.++||++||||+||++++|++|||||||||
T Consensus 326 ~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DDPEA 405 (906)
T COG0567 326 VLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDPEA 405 (906)
T ss_pred eEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhccCCceeecccCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy8742 524 VIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKY 603 (968)
Q Consensus 524 V~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~ 603 (968)
|..|++.|++||++|++||+||++|||++||||+|+|++|||.||+.|++|+.+.+.|.++|+++|++++++++.+.+++
T Consensus 406 v~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~~~ 485 (906)
T COG0567 406 VLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVNDY 485 (906)
T ss_pred hhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccccccCHHHHHHHhcCCChhhhHHHHHHhhccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHH
Q psy8742 604 DKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARL 683 (968)
Q Consensus 604 ~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~ 683 (968)
++.++..+...+... ..+++...|.++.... . ...+|+++.+.|+.|+.+++++| ++|++|+++++++++|.
T Consensus 486 r~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~-~~~~t~v~~~~L~~L~~kl~~~P---e~f~~h~~v~~~~~~r~ 557 (906)
T COG0567 486 RDALDQGFEVVKEYK---EMDWLEGDWSGYLNAG-L-RHVDTGVPKKTLKELGKKLCTIP---EGFEVHPRVKKILEDRK 557 (906)
T ss_pred HHHhhhhhhHHhHHH---hhhccccccccccCCc-c-cccccccCHHHHHHHHHHhhcCC---cceehhHHHHHHHHHHH
Confidence 999999999887765 4556777898887655 2 45689999999999999999999 99999999999999999
Q ss_pred Hhhhhh-chhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcch
Q psy8742 684 QMVESR-TVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSE 762 (968)
Q Consensus 684 ~~~~~~-~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE 762 (968)
+|++++ .+||+|||.|||+|||.+|++||++|||++||||+|||+|+|||+|+ ..|.||++|+..+|.+.|+||||||
T Consensus 558 ~~~~~~~~iDW~~aE~LAfatll~eG~~iRlsGqDs~RGTF~hRHaVlhdq~~~-~~y~PL~~l~~~q~~f~v~nS~LSE 636 (906)
T COG0567 558 AMAEGGQGIDWGMAETLAFATLLDEGHPIRLSGQDSGRGTFSHRHAVLHDQKTG-ETYIPLNHLSKGQGKFEVINSPLSE 636 (906)
T ss_pred HHhccccccchhHHHHhcccceeccCCccccccccCCCcCccccceeeecccCc-cccChhhhcccccceEEEEechhhH
Confidence 999876 69999999999999999999999999999999999999999999975 6999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccCCCCCcccCCChHHHHhccc
Q psy8742 763 FGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGPEHSSARLERFLQMS 842 (968)
Q Consensus 763 ~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~~g~GpeHSs~r~er~lql~ 842 (968)
+|++|||||||+..|+.|+|||+|||||+|||||||||||+||+.||++.|+||++|||||+||||||||+|+|||||||
T Consensus 637 eAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPHgyEGQGPEHSSaRlER~LQLc 716 (906)
T COG0567 637 EAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPHGYEGQGPEHSSARLERFLQLC 716 (906)
T ss_pred HHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccCCCCCCCCcCccchhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCCCce
Q psy8742 843 DDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEF 922 (968)
Q Consensus 843 ~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F 922 (968)
+|+ ||+||+||||+||||+||||+.+++|||||+|+||+|||||.|+|+++||+.+ .|
T Consensus 717 aE~---------------------NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~~~el~~~-~F 774 (906)
T COG0567 717 AEN---------------------NMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEELTEG-TF 774 (906)
T ss_pred HHh---------------------CCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCchhhhchh-hh
Confidence 996 99999999999999999999999999999999999999999999999999999 69
Q ss_pred EEeccCCCccccCCCCccEEEEecchhHHHHHHHHHhcCCCCCccC
Q psy8742 923 LRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAV 968 (968)
Q Consensus 923 ~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~~~~~~~vai 968 (968)
++||.|.+ ..++ +|+|||||||||||||.+.|++.+. +||||
T Consensus 775 ~~vl~d~~--~~~~-~v~rvvlcSGKvyydl~~~r~~~g~-~dvai 816 (906)
T COG0567 775 QPVLEDID--ELDP-KVKRVVLCSGKVYYDLLEQREKDGR-DDVAI 816 (906)
T ss_pred hhhhcccc--cccc-ceeeEEeeccchHHHHHHHHhhcCC-cceeE
Confidence 99999973 2233 3999999999999999999998885 68886
No 4
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=1.4e-208 Score=1866.92 Aligned_cols=832 Identities=46% Similarity=0.745 Sum_probs=731.3
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCcchHhHHHHHhccCCCCCCCCCCCCCChhHHHHhhhccCCCCCCCCCCCCCCCCCCCC
Q psy8742 47 FLNGASANYVEEMYRSWQEDPKSVHASWDAFFRSSSAGALPEDPKSVHASWDAFFRSSSAGALPGQAYQPPPTLAPPSGN 126 (968)
Q Consensus 47 ~l~g~Na~YIEelY~~yl~DP~SVd~sW~~~F~~l~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (968)
||+|.|+.|||+||++|++||+|||+||+.||+.+.+... .++..+.+....|......
T Consensus 1 fl~g~n~~yie~lY~~~~~dP~sv~~~w~~~F~~~~~~~~--~~~~~~~~~~~~~~~~~~~------------------- 59 (929)
T TIGR00239 1 YLSGANQSYIEELYEDYLTDPDSVDASWRSTFDQLPGPGP--APDQFHSPTRSYFRRLAKD------------------- 59 (929)
T ss_pred CCCCCCHHHHHHHHHHHHhChhcCCHHHHHHHHhCcccCC--ccccccCchhhhhcccccc-------------------
Confidence 7899999999999999999999999999998887631100 0000011111112111000
Q ss_pred CCCCCCCCCcccCCCCCCCCchhHHHHhHHHHHHHHHHHHHHccccccccCCCCCCccCCCCCCCcccccccCCCCChhH
Q psy8742 127 QVPISSLAPFVGGASSHFNEPLSEKIIDDHLAVQALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQELIFHNFWPSSISY 206 (968)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~li~ayr~~GH~~A~ldPL~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (968)
........ ... ....++++|.+||+|||.+||+.|+||||++..+ ...++| +|++
T Consensus 60 ------~~~~~~~~------~~~-~~~~~~~~v~~LI~ayR~~GHl~A~lDPL~~~~~----~~~~~l--------~~~~ 114 (929)
T TIGR00239 60 ------ASRGSVTI------SDP-DTNVSQVKVLQLIRAYRFRGHLHANLDPLGLKQQ----DKVPEL--------DLSF 114 (929)
T ss_pred ------cccccccc------cch-hhhHHHHHHHHHHHHHHHhcchheecCCCCCCCC----CCCCcc--------Chhh
Confidence 00000000 000 1123578999999999999999999999997432 355778 9999
Q ss_pred HHHhhhhhccCCCCcccccceeccCCcccccCC-CCCCCHHHHHHHHHHHccCcccccccccCCHHHHHHHHHHhcCCCC
Q psy8742 207 AQQLQHKVADMMQKETDMEKVFKLPSTTFIGGK-EKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLETPGI 285 (968)
Q Consensus 207 ~~~~~~~~~~~gl~~~Dl~~~~~~~~~~~~~~~-~~~~~l~~i~~~L~~~Ycg~ig~E~~hi~~~e~r~Wl~~~~E~~~~ 285 (968)
| ||+++||++.|.++... ++.. ...+||+||+++|+++|||+||+|||||.|+++|.||++|||+...
T Consensus 115 ~----------gl~~~dl~~~~~~~~~~-~~~~~~~~~~l~eii~~L~~~YCg~ig~E~~hi~~~~~r~Wl~~~iE~~~~ 183 (929)
T TIGR00239 115 Y----------GLTEADLQETFNIGSFV-SGKDATMKLSNLELLQALKQTYCGSIGAEYMHITSTEEKRWLQQRIESGER 183 (929)
T ss_pred c----------CCChHHhCceeeecccc-cCccccccCCHHHHHHHHHHHhcCcceeeeecCCCHHHHHHHHHHHhCCCC
Confidence 9 99999999999765321 2322 2246999999999999999999999999999999999999996546
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHHHhcC
Q psy8742 286 MNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCR 365 (968)
Q Consensus 286 ~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La~g~g 365 (968)
..++++++++||++|++++.||+||+++|+++||||+||+|++||+|++||+.|+..|++++++||+||||+|+|+|++|
T Consensus 184 ~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRFslEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~nv~g 263 (929)
T TIGR00239 184 AQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFSLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLVNVLG 263 (929)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHHHHHhC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHh-cCCCC-CCCCCCCcccccc-cccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCC-CCC
Q psy8742 366 KPLEQIFTQF-AALEA-ADDGSGDVKYHLG-TYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGD-GEG 441 (968)
Q Consensus 366 kp~~~ifae~-g~~~~-~~~G~GdV~~Hlg-~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~-~~~ 441 (968)
||+++||+|| |+..+ .++|+||||||+| ++.... ..|+.++++|++||||||+|+|||+|+|||+|++.++ ..+
T Consensus 264 kp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~--~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~~ 341 (929)
T TIGR00239 264 KPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFT--TDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSPES 341 (929)
T ss_pred CCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccc--cCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCcccc
Confidence 9999999999 75544 3468999999999 555433 3677899999999999999999999999999997543 345
Q ss_pred ceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCH
Q psy8742 442 KKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDP 521 (968)
Q Consensus 442 ~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~ 521 (968)
++.|+||+||||||+|||+||||||||.|++|.|||+||||+||||||||++.+++++.||+|+|++||+|++|||||||
T Consensus 342 ~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~ 421 (929)
T TIGR00239 342 TKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNADDP 421 (929)
T ss_pred cceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECCCCH
Confidence 68999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHH
Q psy8742 522 EAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKE 601 (968)
Q Consensus 522 eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~ 601 (968)
+||++|+++|++|||+|+||+|||++|||++|||++|+|.+|+|+||+.|++++||+.+|+++|+++|++|++++++|++
T Consensus 422 ~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~ 501 (929)
T TIGR00239 422 EAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVN 501 (929)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHH
Q psy8742 602 KYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKA 681 (968)
Q Consensus 602 e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~ 681 (968)
+++++|++|++.++..+.+.+. ...|..+..... ....+|+++.+.|+.|+.+++++| ++|++||+|+|+++.
T Consensus 502 ~~~~~v~~a~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~t~v~~~~l~~l~~~~~~~P---~~f~~h~~~~k~~~~ 574 (929)
T TIGR00239 502 LYRDALEAADCVVPSWREMNTA---SFTWSPELNHEW-DEEYPNKVEMKRLQELAKRISEVP---EGVEMHSRVAKIYFD 574 (929)
T ss_pred HHHHHHHHHHHhhhccCCcccc---cccccccccccc-ccCCCCCCCHHHHHHHHHHhccCC---CCccccHHHHHHHHH
Confidence 9999999999999876543322 125765543221 123479999999999999999999 999999999999999
Q ss_pred H-HHhhhhh-chhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCC
Q psy8742 682 R-LQMVESR-TVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSS 759 (968)
Q Consensus 682 r-~~~~~~~-~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nsp 759 (968)
| .+|.+++ .+||++||+|||++||.+|++|||+||||+||||||||||||||+++ ++|+||++|.++||++||+|||
T Consensus 575 R~~~~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g-~~~~~~~~l~~~~g~~rV~nsp 653 (929)
T TIGR00239 575 RTKAMAAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNG-STYTPLQHLHNGQGAFRVWNSV 653 (929)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccC-ceeecccchhhhcCCeeEEcCC
Confidence 9 7888664 49999999999999999999999999999999999999999999986 6999999999999999999999
Q ss_pred cchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccCCCCCcccCCChHHHHh
Q psy8742 760 LSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGPEHSSARLERFL 839 (968)
Q Consensus 760 LsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~~g~GpeHSs~r~er~l 839 (968)
|||+||+|||||||+.||+||+|||+|||||+|+|||+|||||+++++||++++|||||+||||+|+||+|||+|+||||
T Consensus 654 lSE~a~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~G~~g~g~~hsS~~~E~~l 733 (929)
T TIGR00239 654 LSEESVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPHGYEGQGPEHSSGRLERFL 733 (929)
T ss_pred ccHHHHHHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEecCcCCCCCchhhccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCC
Q psy8742 840 QMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEG 919 (968)
Q Consensus 840 ql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g 919 (968)
|||+. | ||+||+||||+|||||||||+.++++||||||+||+|||++.|+|+++||.+|
T Consensus 734 ql~~~-----~----------------gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~ 792 (929)
T TIGR00239 734 QLAAE-----Q----------------NMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEG 792 (929)
T ss_pred HHhCC-----C----------------CCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCC
Confidence 99986 4 99999999999999999999999999999999999999999999999999877
Q ss_pred CceEEeccCCCcc--ccCCCCccEEEEecchhHHHHHHHHHhcCCCCCccC
Q psy8742 920 TEFLRVIPDDSIS--ERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAV 968 (968)
Q Consensus 920 ~~F~~vi~d~~~~--~~~~~~v~rvilcsGkvyydl~~~r~~~~~~~~vai 968 (968)
+ |+++|+|.... ..++++|+|||+|||||||||.++|.+.+. .||+|
T Consensus 793 ~-f~~~i~~~~~~~~~~~~~~v~~vv~~sg~v~~~l~~~~~~~~~-~~v~i 841 (929)
T TIGR00239 793 T-FQPVIGEIEESGLSLDPEGVKRLVLCSGKVYYDLHEQRRKNGQ-KDVAI 841 (929)
T ss_pred C-cccccccccccccccCccCCcEEEEECchHHHHHHHHHHhcCC-CCEEE
Confidence 5 99999885321 235679999999999999999999987765 46775
No 5
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=4.6e-207 Score=1862.33 Aligned_cols=822 Identities=50% Similarity=0.833 Sum_probs=738.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcchHhHHHHHhccCCCCCCCCCCCCCChhHHHHhhhccCCCCCCCCCCCCCCCCC
Q psy8742 44 AEPFLNGASANYVEEMYRSWQEDPKSVHASWDAFFRSSSAGALPEDPKSVHASWDAFFRSSSAGALPGQAYQPPPTLAPP 123 (968)
Q Consensus 44 ~~s~l~g~Na~YIEelY~~yl~DP~SVd~sW~~~F~~l~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~ 123 (968)
..+||+|.|+.|||+||++|++||+|||+||++||+.+.... ....+.+....|...
T Consensus 10 ~~~~~~~~n~~yie~ly~~~~~dp~sV~~sw~~~F~~~~~~~----~~~~~~~~~~~~~~~------------------- 66 (924)
T PRK09404 10 DSSFLFGANAAYIEELYEQYLKDPDSVDEEWRAFFDGLPGVA----PDVAHSAVRESFRRL------------------- 66 (924)
T ss_pred hcccCCCCCHHHHHHHHHHHhhChhhcCHHHHHHHHhccccc----cccccchhhhhhhhc-------------------
Confidence 459999999999999999999999999999999776653100 000000000000000
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCchhHHHHhHHHHHHHHHHHHHHccccccccCCCCCCccCCCCCCCcccccccCCCCC
Q psy8742 124 SGNQVPISSLAPFVGGASSHFNEPLSEKIIDDHLAVQALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQELIFHNFWPSS 203 (968)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~li~ayr~~GH~~A~ldPL~~~~~~~~~~~~~~l~~~~~~~~~ 203 (968)
+. . . ........++++|.+||+|||.+||+.|+||||++..+ ...++| +
T Consensus 67 --------~~-~---~-------~~~~~~~~~~~~v~~Li~ayR~~GHl~A~lDPL~~~~~----~~~~~L--------~ 115 (924)
T PRK09404 67 --------AK-P---A-------RVSSAVSDPQVKVLQLINAYRFRGHLAANLDPLGLWKR----PDVPEL--------D 115 (924)
T ss_pred --------cc-c---c-------ccchhhhhHHHHHHHHHHHHHHhCchheecCCCCCccC----CCCccC--------C
Confidence 00 0 0 00001123578999999999999999999999997322 356778 9
Q ss_pred hhHHHHhhhhhccCCCCcccccceeccCCcccccCCCCCCCHHHHHHHHHHHccCcccccccccCCHHHHHHHHHHhcCC
Q psy8742 204 ISYAQQLQHKVADMMQKETDMEKVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLETP 283 (968)
Q Consensus 204 ~~~~~~~~~~~~~~gl~~~Dl~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~Ycg~ig~E~~hi~~~e~r~Wl~~~~E~~ 283 (968)
|++| ||+++||++.|.++. +.. +...+||+||+++|+++|||+||+|||||.|.++|+||+++||+.
T Consensus 116 ~~~~----------gl~~~dl~~~~~~~~--~~~-~~~~~~l~eii~~L~~~Ycg~ig~E~~hi~~~~er~Wl~~~iE~~ 182 (924)
T PRK09404 116 PAFY----------GLTEADLDRTFNTGS--LAL-GKETATLREIIEALKKTYCGSIGVEYMHISDPEERRWLQQRIESG 182 (924)
T ss_pred hhhc----------CCChHHcCCccccCc--ccc-CCCCCcHHHHHHHHHHHhcccHhheeccCCCHHHHHHHHHHHhCC
Confidence 9999 999999999997642 211 234479999999999999999999999999999999999999976
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHHHh
Q psy8742 284 GIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANV 363 (968)
Q Consensus 284 ~~~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La~g 363 (968)
.. .+++++++++|++|+++|.||+||+++|.++||||++|+|++++|+.++++.|+++|++|+++||+||||+|+|+++
T Consensus 183 ~~-~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v 261 (924)
T PRK09404 183 RP-SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV 261 (924)
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence 55 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHh-cCCC-CCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCC-CC
Q psy8742 364 CRKPLEQIFTQF-AALE-AADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGD-GE 440 (968)
Q Consensus 364 ~gkp~~~ifae~-g~~~-~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~-~~ 440 (968)
+|+|+.+||+|| |+.. ....|.|||+||+|.+.... ..|+.+++++++||||||+++|||+|+|+|.|++.++ .+
T Consensus 262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~--g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~ 339 (924)
T PRK09404 262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRE--TDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQD 339 (924)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCcccccc--CCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCccc
Confidence 999999999999 7642 22347899999999987643 2578899999999999999999999999999997554 44
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
+++.|+||+||||||+|||+||||||||.|++|.|||+||||+||||||||++.+++++.||+|+|++||+|++||||||
T Consensus 340 ~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D 419 (924)
T PRK09404 340 RKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDD 419 (924)
T ss_pred ccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCC
Confidence 56699999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHH
Q psy8742 521 PEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVK 600 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~ 600 (968)
|+||+.|+++|++|||+|+||+|||++|||++|||++|+|.||+|.||+.|++++||+.+|+++|+++|++|++++++|+
T Consensus 420 ~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~ 499 (924)
T PRK09404 420 PEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMV 499 (924)
T ss_pred HHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHH
Q psy8742 601 EKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILK 680 (968)
Q Consensus 601 ~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~ 680 (968)
++++++|++|+++|++. .+.+++...|+.+..+.. ....+|+++.+.|+.++++++++| ++|++||+|+|+++
T Consensus 500 ~~~~~~v~~a~~~A~~~---~~~~~~~~~~~~~~~~~~-~~~~~t~v~~~~l~~~~~~~~~~P---~~f~~h~~~~k~~~ 572 (924)
T PRK09404 500 NEYRDALDAGFEVVKEW---RPADWLAGDWSPYLGHEW-DDPVDTGVPLERLKELAEKLTTVP---EGFKVHPKVKKILE 572 (924)
T ss_pred HHHHHHHHHHHHHHHhc---Cccccccccccccccccc-ccccCCCCCHHHHHHHHHHhccCC---CCCcccHHHHHHHH
Confidence 99999999999999875 345667778986654432 223589999999999999999999 99999999999999
Q ss_pred HHHHhhhhh-chhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCC
Q psy8742 681 ARLQMVESR-TVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSS 759 (968)
Q Consensus 681 ~r~~~~~~~-~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nsp 759 (968)
+|.+|++++ .||||+||+|||||||.+|++|||+||||+||||||||||||||+++ ++|+||++|.++||++||+|||
T Consensus 573 ~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~g-g~~~~~~~l~~~~g~~rV~nsp 651 (924)
T PRK09404 573 DRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTG-ETYIPLNHLSEGQASFEVYDSP 651 (924)
T ss_pred HHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCC-CEeccccchhhhcCCceEecCc
Confidence 999999764 49999999999999999999999999999999999999999999986 6999999999999999999999
Q ss_pred cchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccCCCCCcccCCChHHHHh
Q psy8742 760 LSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGPEHSSARLERFL 839 (968)
Q Consensus 760 LsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~~g~GpeHSs~r~er~l 839 (968)
|||+||+|||||||+.|++||+|||+|||||+|+||++|||||++++.||++++|||||+||||+|+||+|||+|+||||
T Consensus 652 lsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p~G~~g~g~~hsS~~~E~~l 731 (924)
T PRK09404 652 LSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPHGYEGQGPEHSSARLERFL 731 (924)
T ss_pred chHHHHHHHHHHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEEecCcCCCCChhhhccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCC
Q psy8742 840 QMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEG 919 (968)
Q Consensus 840 ql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g 919 (968)
|+|+++ ||+||+||||+|||||||||+.+++|||||||+||+|||++.++|+++||.++
T Consensus 732 ~~~~~~---------------------gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~ 790 (924)
T PRK09404 732 QLCAED---------------------NMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEG 790 (924)
T ss_pred HhCCCC---------------------CCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCC
Confidence 999874 99999999999999999999999999999999999999999999999999888
Q ss_pred CceEEeccCCCccccCCCCccEEEEecchhHHHHHHHHHhcCCCCCccC
Q psy8742 920 TEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAV 968 (968)
Q Consensus 920 ~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~~~~~~~vai 968 (968)
+ |++||+|+. ..++++|+||||||||+||+|+++|++.+. ++|+|
T Consensus 791 ~-f~~vi~~~~--~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~~-~~v~i 835 (924)
T PRK09404 791 S-FQPVIGDID--ELDPKKVKRVVLCSGKVYYDLLEARRKRGI-DDVAI 835 (924)
T ss_pred C-ceeeccccc--ccCccceeEEEEEcCHHHHHHHHHHHhCCC-CCEEE
Confidence 6 999999974 346789999999999999999999998876 47775
No 6
>KOG0451|consensus
Probab=100.00 E-value=5e-194 Score=1594.90 Aligned_cols=759 Identities=42% Similarity=0.727 Sum_probs=701.9
Q ss_pred HHHHHHHHHHHHHccccccccCCCCCCccCCCCCCCcccccccCCCCChhHHHHhhhhhccCCCCcccccceeccCCccc
Q psy8742 156 HLAVQALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQELIFHNFWPSSISYAQQLQHKVADMMQKETDMEKVFKLPSTTF 235 (968)
Q Consensus 156 ~~~v~~li~ayr~~GH~~A~ldPL~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gl~~~Dl~~~~~~~~~~~ 235 (968)
+..+.+||+|||.|||+.|++|||.+.... ....+| +|..| |+-..| ++
T Consensus 53 ~a~~~rlv~afr~hGhk~A~vnPl~~l~~v---~e~qeL--------~pa~y----------G~~~t~----------gL 101 (913)
T KOG0451|consen 53 QANVYRLVEAFRQHGHKLAAVNPLSILTSV---QELQEL--------SPAFY----------GLQRTD----------GL 101 (913)
T ss_pred cccHHHHHHHHHHhcchhhccCchHhhhcc---HHHHHh--------CHHhh----------cchhhh----------hh
Confidence 457799999999999999999999954211 223457 89999 764221 23
Q ss_pred ccCCCCCCCHHHHHHHHHHHccCcccccccccCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8742 236 IGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLETPGIMNMSEDQKRLILARLTRATGFEAFLARKWS 315 (968)
Q Consensus 236 ~~~~~~~~~l~~i~~~L~~~Ycg~ig~E~~hi~~~e~r~Wl~~~~E~~~~~~ls~e~~~~il~~M~~aR~fE~~l~~~~~ 315 (968)
+.+++...+|.|+.+.|+.+|||++.+||+||+|.|||+||.+++|+.....|.+|++.+|-+.|+++..||.||.+||+
T Consensus 102 l~~~k~~~sl~~l~~~L~~IYCG~tsiEfs~v~~~eEr~W~a~nFE~l~~e~l~keEr~~i~~Lmlksq~fD~FlatKFp 181 (913)
T KOG0451|consen 102 LSGPKVAHSLAQLEQLLKDIYCGSTSIEFSYVEDIEEREWLARNFETLDQEQLGKEERCEIAELMLKSQAFDNFLATKFP 181 (913)
T ss_pred hcCccccccHHHHHHHHHhheeCcchhhhhhhccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhccc
Confidence 34456678999999999999999999999999999999999999998877789999999999999999999999999999
Q ss_pred ccCccccCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHHHhcCCCHHHHHHHh-cCCCC--CCCCCCCccccc
Q psy8742 316 SEKRFGLEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQF-AALEA--ADDGSGDVKYHL 392 (968)
Q Consensus 316 ~~Krfg~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La~g~gkp~~~ifae~-g~~~~--~~~G~GdV~~Hl 392 (968)
+-||||.||.|++...+.+|+.-++..+++++++||+||||+|+|+-.++.|+..||.++ |...- .....|||-.|+
T Consensus 182 TvKRYGgEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl 261 (913)
T KOG0451|consen 182 TVKRYGGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHL 261 (913)
T ss_pred hhhhhccccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999 44332 224578999999
Q ss_pred ccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCC---------CCceEEEEEEeCCccccCcchHHH
Q psy8742 393 GTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDG---------EGKKVMSILLHGDAAFCGQGVVFE 463 (968)
Q Consensus 393 g~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~---------~~~~~v~v~~hGDgAfsgQGvv~E 463 (968)
.++.+.+ ..++++++++++||||||++||||+|++|++|..++++ -|+.++.|++||||||+|||+++|
T Consensus 262 ~sS~dyk--g~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E 339 (913)
T KOG0451|consen 262 HSSEDYK--GLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQE 339 (913)
T ss_pred hhhhhhc--ccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHH
Confidence 9887743 37889999999999999999999999999999977542 367899999999999999999999
Q ss_pred HHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEE
Q psy8742 464 TFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVV 543 (968)
Q Consensus 464 aLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvl 543 (968)
++|||++|+|++||+||+|+|||+|||||.+++||+.||+|+||.+++|+|||||||||+|.+|+++|++|+|+|+||||
T Consensus 340 ~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvf 419 (913)
T KOG0451|consen 340 CLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVF 419 (913)
T ss_pred HHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q psy8742 544 IDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYK 623 (968)
Q Consensus 544 Iel~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~ 623 (968)
||++|||++||||.|||.||+|.||+.++++.++.+.|.++|+++|++|+++++++++++.+.+.+.++.+..+.+| .
T Consensus 420 IdL~CfRrwgHnelddp~ftspvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp--~ 497 (913)
T KOG0451|consen 420 IDLNCFRRWGHNELDDPTFTSPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPP--P 497 (913)
T ss_pred eehHHHHHhccccccCccccChhHHHHHHhhhcccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCccCCC--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876543 3
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHH-HHHHHHhhhhh-chhhhhhhHhhh
Q psy8742 624 DWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERI-LKARLQMVESR-TVDWALGEAMAF 701 (968)
Q Consensus 624 ~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~-l~~r~~~~~~~-~idwa~aE~LA~ 701 (968)
..+...|.++..+......|+||++.+.|+.||.+++++| ++|++|+.|.|. ++.|.+-+++| +|||||||+||+
T Consensus 498 ~~~~~~W~gf~qapk~it~WdTGv~~dLLrfiG~~SV~vP---edf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEAlA~ 574 (913)
T KOG0451|consen 498 SYFEKQWTGFQQAPKEITYWDTGVDYDLLRFIGQQSVTVP---EDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAI 574 (913)
T ss_pred hhhHHhhhhhccChhhhcccccCcchHHHHHhccCceecc---hhccccHHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence 3467789999876667788999999999999999999999 999999999995 67786666555 699999999999
Q ss_pred hhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCC-CCcEeecCCcchHHHHHHhhhcccCCCCcc
Q psy8742 702 GSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQ-APYTVCNSSLSEFGVLGFELGFSMTNPNTL 780 (968)
Q Consensus 702 ~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~-g~~~v~nspLsE~avlG~~~G~s~~g~~~l 780 (968)
||||.+|++||||||||+|||||||||+++||.|+ ..|.||+++...+ |..+|.||+|||.||||||||+|+++|+.|
T Consensus 575 GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td-~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyGmsienP~~L 653 (913)
T KOG0451|consen 575 GSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTD-EMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYGMSIENPNNL 653 (913)
T ss_pred HHHHhccCceeeeccccCcccccccceeeeecccc-ceeeeccccCCCcCCeeEeccccccHhhhhhhhcccccCCcccc
Confidence 99999999999999999999999999999999998 5999999998765 689999999999999999999999999999
Q ss_pred ccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccCCCCCcccCCChHHHHhcccCCCCcccccccchhhhhh
Q psy8742 781 VCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAV 860 (968)
Q Consensus 781 ~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~ 860 (968)
+|||||||||+||||||||.||++||+||..+|+|||+|||||+|.||||||||||||||||++.+..+.+
T Consensus 654 ~iWEAQFGDFfNGAQIIiDTFi~sgE~KWl~ssglvmLLPHGyDGAgpeHSSCRiERFLQlCDS~E~~vDG--------- 724 (913)
T KOG0451|consen 654 IIWEAQFGDFFNGAQIIIDTFIVSGETKWLESSGLVMLLPHGYDGAGPEHSSCRIERFLQLCDSKETSVDG--------- 724 (913)
T ss_pred eeehhhhcccccCceEEEeeeecccchhhhhhCCeEEEccCCcCCCCCccchhhHHHHHHHhccccccCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999998777652
Q ss_pred hcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccccCCCCcc
Q psy8742 861 RQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVE 940 (968)
Q Consensus 861 ~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~v~ 940 (968)
.++||.||+||||||||||||||+.+||||||||..||.|||+|.|+|+++||.+||+|++||+|. ..++++||
T Consensus 725 ---d~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~---~~~p~kvk 798 (913)
T KOG0451|consen 725 ---DSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDT---IAKPEKVK 798 (913)
T ss_pred ---cceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhhhHhhcCCCcccccccccc---ccChhHhe
Confidence 246999999999999999999999999999999999999999999999999999999999999997 46899999
Q ss_pred EEEEecchhHHHHHHHHHhcCCCCCccC
Q psy8742 941 KLVFCSGKVYYDLIKARNDNNLGDKIAV 968 (968)
Q Consensus 941 rvilcsGkvyydl~~~r~~~~~~~~vai 968 (968)
+|||||||+||.|.++|++++.+|.|||
T Consensus 799 kvifcSGKH~y~l~k~Re~rgakd~~AI 826 (913)
T KOG0451|consen 799 KVIFCSGKHYYTLAKEREKRGAKDTVAI 826 (913)
T ss_pred EEEEecCcchhhHHHHHHhcccccceee
Confidence 9999999999999999999999887887
No 7
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=6.6e-75 Score=623.38 Aligned_cols=262 Identities=69% Similarity=1.107 Sum_probs=245.7
Q ss_pred HHHHHHHHHhccCccccCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHHHhcCCCHHHHHHHh-cCCCC--CC
Q psy8742 306 FEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQF-AALEA--AD 382 (968)
Q Consensus 306 fE~~l~~~~~~~Krfg~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La~g~gkp~~~ifae~-g~~~~--~~ 382 (968)
||+||+++|+++||||++|+|+++++++++++.++..|++|+++||+||||+|+|+|++|+|+++||+|| ++.+. ..
T Consensus 1 ~e~f~~~~f~~~krfs~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~ 80 (265)
T cd02016 1 FEQFLATKFPGQKRFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDD 80 (265)
T ss_pred ChhhHHHhcCCCeEEEecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999 65541 22
Q ss_pred CCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHH
Q psy8742 383 DGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVF 462 (968)
Q Consensus 383 ~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~ 462 (968)
.|.||||||+|++..... ..|+.++++|++||||||+++|+|+|+|+|.|++.++..+++.|+||+||||||+|||+||
T Consensus 81 ~~~gdv~yHlg~~~~~~~-~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~ 159 (265)
T cd02016 81 EGSGDVKYHLGYSSDRKT-PSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVY 159 (265)
T ss_pred CCCCCcCcCCccCccccc-CCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHH
Confidence 467899999999876543 2478899999999999999999999999999996544344689999999999988999999
Q ss_pred HHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcE
Q psy8742 463 ETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDV 542 (968)
Q Consensus 463 EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPv 542 (968)
||||||+||+|.|||+||||+||||||||++++++++.+++|+|++||+|++|||||||+||++|+++|++|||+|+||+
T Consensus 160 EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~ 239 (265)
T cd02016 160 ETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDV 239 (265)
T ss_pred HHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCCCCCCCCCCCHHHH
Q psy8742 543 VIDIVSYRRNGHNEIDEPMFTQPLMY 568 (968)
Q Consensus 543 lIel~tYR~~GHne~Ddp~yt~p~~y 568 (968)
|||++|||++|||++|+|+||||.||
T Consensus 240 lIe~~tYR~~GHse~D~p~~t~p~my 265 (265)
T cd02016 240 VIDLVCYRRHGHNELDEPSFTQPLMY 265 (265)
T ss_pred EEEEEEecCCCCCCcCCccccCCCcC
Confidence 99999999999999999999999997
No 8
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-65 Score=567.89 Aligned_cols=310 Identities=19% Similarity=0.268 Sum_probs=281.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc----CcchhhHHHHHHHHHHhhhcCCC-cEEeccCCccHHHHH
Q psy8742 286 MNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGL----EGAEILIPAMKQVIDKSTELGVE-SVVMGMPHRGRLNVL 360 (968)
Q Consensus 286 ~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg~----eG~Ea~i~~l~~li~~a~~~g~~-divigm~HRgr~~~L 360 (968)
..+++++++++|++|+++|.||+++..++++||..|+ .|||++.+|+ +.++..+ |+++ ++||+|+++|
T Consensus 22 ~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~------~~aL~~~~D~i~-~~YR~h~~~l 94 (358)
T COG1071 22 AALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGA------AAALRPGEDWIF-PTYRDHGHLL 94 (358)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHH------HHhcCCCCCEee-cccCccccce
Confidence 4689999999999999999999999999999998864 9999999864 4567755 6665 6999999999
Q ss_pred HHhcCCCHHHHHHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCC
Q psy8742 361 ANVCRKPLEQIFTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDG 439 (968)
Q Consensus 361 a~g~gkp~~~ifae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~ 439 (968)
++|+ |+.+||+++ |+.++.|+|+|+ +||+++...++ ++.++.+|+|.|+|+|+|+|.|++
T Consensus 95 ~~G~--~~~~~~a~~~G~~~g~~kGr~~-~~h~~~~~~~~------------~~~~~iVg~Q~~~AaG~A~a~k~~---- 155 (358)
T COG1071 95 ARGV--PLKEIMAELLGKATGPCKGRGG-SMHYSDKEKGF------------LGGSGIVGTQIPLAAGAALALKYR---- 155 (358)
T ss_pred ecCC--CHHHHHHHHhccccCCCCCCCC-ccccccccccc------------CCCCceecccccHHHHHHHHHHHh----
Confidence 9977 999999999 999999999975 99999876554 344567799999999999999994
Q ss_pred CC-ceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEE
Q psy8742 440 EG-KKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFH 515 (968)
Q Consensus 440 ~~-~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~h 515 (968)
+ ++.|++|++|||| ++||+|||+|||| +|| +||+|+|||||||+|.+.+.....++.+|.+||||++.
T Consensus 156 -~~~~~Va~~~~GDGa-t~qG~FhEalN~A~v~klP------vvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~ 227 (358)
T COG1071 156 -GTKDGVAVAFFGDGA-TNQGDFHEALNFAAVWKLP------VVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVR 227 (358)
T ss_pred -CCCCcEEEEEecCCc-cccchHHHHHHHHHHhcCC------EEEEEecCCceeecchhhcccchhHHhhhhccCCCeEE
Confidence 4 4449999999999 8999999999999 999 99999999999999887787777788899999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCC-CCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHH
Q psy8742 516 VNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPM-FTQPLMYKIIKKTPPALDKYANKLIEEKVVTEE 594 (968)
Q Consensus 516 VDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~-yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~e 594 (968)
|||||++|||+++++|++|+|++++|+|||++|||+.|||++|+|. ||+++|.+.|++ +|||.+++++|++.|++|++
T Consensus 228 VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~-~DPi~r~~~~L~~~g~~see 306 (358)
T COG1071 228 VDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKK-RDPIVRLRKYLIEAGILSEE 306 (358)
T ss_pred ECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhc-cChHHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999999999999999965 999999999986 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCC
Q psy8742 595 QVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPW 630 (968)
Q Consensus 595 e~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w 630 (968)
++++|+++++++|++|+++|++.|.|++.+.+...+
T Consensus 307 ~~~~i~~e~~~~V~ea~e~a~~~p~P~~~~~~~~Vy 342 (358)
T COG1071 307 ELEAIEAEAKAEVDEAVEFAEASPYPDVSELFEDVY 342 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCChhHhhhccc
Confidence 999999999999999999999999888777654433
No 9
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=1.1e-62 Score=542.32 Aligned_cols=291 Identities=28% Similarity=0.367 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCcccc----CcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHHHhcCCCHHHHHH
Q psy8742 298 ARLTRATGFEAFLARKWSSEKRFGL----EGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIFT 373 (968)
Q Consensus 298 ~~M~~aR~fE~~l~~~~~~~Krfg~----eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La~g~gkp~~~ifa 373 (968)
++|+++|.||+.+..+|.++|++|+ .|+|++.+++. .+++.+|+++ ++||+|+++|++|+ ++.++|+
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~------~~l~~~D~v~-~~yR~~~~~la~g~--~~~~~~~ 71 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAA------AALRPGDWVF-PYYRDHGHALARGI--DLEEIFA 71 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHH------HHSCTTSEEE-ECSTTHHHHHHTTT---HHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHH------HhccCCCEEE-ecccchhhhhhccc--cccchhH
Confidence 3677888888888888989998875 89999987643 4567778887 58999999999987 9999999
Q ss_pred Hh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCC
Q psy8742 374 QF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGD 452 (968)
Q Consensus 374 e~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGD 452 (968)
|+ |+..+.++|+. +.|.+.+.. .+.+.+|++|+++|+|+|.|+|.|+ .+++.|+||+|||
T Consensus 72 e~~g~~~g~~g~~~--~~~~~~~~~------------~~~~~~~~vg~~~p~a~G~A~a~k~-----~~~~~v~v~~~GD 132 (300)
T PF00676_consen 72 ELLGKAKGHGGGRH--PLHFSDKGL------------NILGASSPVGAQVPIAAGVALAIKY-----RGKDGVVVCFFGD 132 (300)
T ss_dssp HHHTBTTSTTTTGC--TTEEEBTTT------------TBEEEESSTTTHHHHHHHHHHHHHH-----TTSSEEEEEEEET
T ss_pred HhcCcccCCCCCcc--ccccccccc------------eeeeccccccccCccccchhHhhhh-----cCCceeEEEEecC
Confidence 99 77643333321 244444332 3455668899999999999999998 6888999999999
Q ss_pred ccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHH
Q psy8742 453 AAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCN 529 (968)
Q Consensus 453 gAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~ 529 (968)
|| ++||+|||+|||| +|| +||||+||||||||+..+++++.+++++|++||+|+++||||||++|++|++
T Consensus 133 ga-~~qG~~~EalN~A~~~~lP------vifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~ 205 (300)
T PF00676_consen 133 GA-TSQGDFHEALNLAALWKLP------VIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAK 205 (300)
T ss_dssp GG-GGSHHHHHHHHHHHHTTTS------EEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHH
T ss_pred cc-cccCccHHHHHHHhhccCC------eEEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHH
Confidence 99 8999999999999 999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCcEEEEEEeecCCCCCCCCCCC-CCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy8742 530 LAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPM-FTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICE 608 (968)
Q Consensus 530 ~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~-yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~ 608 (968)
+|++|+|+|+||+|||++|||++|||++|+|. ||+|+||+.|++++||+.+|+++|+++|++|++++++|+++++++|+
T Consensus 206 ~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~ 285 (300)
T PF00676_consen 206 EAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVE 285 (300)
T ss_dssp HHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987 56599999998888999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCc
Q psy8742 609 EAYVNARKETHIKYK 623 (968)
Q Consensus 609 ~a~~~A~~~~~~~~~ 623 (968)
+++++|++.|.|+|+
T Consensus 286 ~a~~~a~~~p~p~~e 300 (300)
T PF00676_consen 286 EAVEFAEASPEPDPE 300 (300)
T ss_dssp HHHHHHHHSHBC-G-
T ss_pred HHHHHHHhCCCCCCC
Confidence 999999999887653
No 10
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=1.1e-61 Score=544.45 Aligned_cols=309 Identities=18% Similarity=0.292 Sum_probs=280.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHH
Q psy8742 286 MNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFG----LEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLA 361 (968)
Q Consensus 286 ~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg----~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La 361 (968)
..+++++++++|+.|+++|.||+++..+|++++..| ..|||++.+|+ +.++..+|+++ ++||+|+++|+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~------~~aL~~~D~~~-~~yR~hg~~la 97 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGM------EAAITKEDAII-TAYRDHCTHLG 97 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHH------HHhcCCCCEEE-echhhHHHHHH
Confidence 468999999999999999999999999999998755 49999998864 34576678777 59999999999
Q ss_pred HhcCCCHHHHHHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCCC
Q psy8742 362 NVCRKPLEQIFTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGE 440 (968)
Q Consensus 362 ~g~gkp~~~ifae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~ 440 (968)
+|+ ++.++|+|+ |+.++.++|+|+ +||+++.+.++ ++..|+||+++|+|+|+|+|.|+ .
T Consensus 98 ~G~--~~~~~~ae~~g~~~g~~~Grgg-smH~~~~~~~~------------~~~~~~vG~~~p~A~G~A~A~k~-----~ 157 (362)
T PLN02269 98 RGG--TVLEVFAELMGRKDGCSRGKGG-SMHFYKKDANF------------YGGHGIVGAQVPLGAGLAFAQKY-----N 157 (362)
T ss_pred cCC--CHHHHHHHHcCCCCCCCCCCCC-cccccchhcCc------------cccCchhhccccHHHHHHHHHHH-----h
Confidence 977 999999999 988999999986 99998876544 45568999999999999999999 5
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEe
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVN 517 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVD 517 (968)
+++.+++|+||||| ++||.|||+|||| +|| +||||+||||||||+...+..+..+++ +++++|+++||
T Consensus 158 ~~~~v~v~~~GDGa-~~eG~~~Ealn~A~~~~lP------vvfvveNN~~aist~~~~~~~~~~~~~--~~~~~p~~~VD 228 (362)
T PLN02269 158 KEENVAFALYGDGA-ANQGQLFEALNIAALWDLP------VIFVCENNHYGMGTAEWRAAKSPAYYK--RGDYVPGLKVD 228 (362)
T ss_pred CCCCeEEEEECCCC-cccCHHHHHHHHhhccCcC------EEEEEeCCCEeccCchhhhccchHHHH--hhcCCCeEEEC
Confidence 67789999999999 8999999999999 899 999999999999998777766655554 45789999999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCC-CCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHH
Q psy8742 518 SDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEP-MFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQV 596 (968)
Q Consensus 518 GnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp-~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~ 596 (968)
|+|++||++|++.|++++|+ +||+|||++|||++|||++|++ .||+|+|++.|++++||+.+|+++|+++|++|++++
T Consensus 229 G~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~ 307 (362)
T PLN02269 229 GMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAEL 307 (362)
T ss_pred CCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999 9999999999999999999987 699999999998779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCC
Q psy8742 597 KDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWS 631 (968)
Q Consensus 597 ~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~ 631 (968)
++++++++++|++++++|++.|.|++++.++..+.
T Consensus 308 ~~i~~e~~~~v~~a~~~A~~~p~P~~~~~~~~vy~ 342 (362)
T PLN02269 308 KDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVYV 342 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccc
Confidence 99999999999999999999999888887766654
No 11
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=6.7e-60 Score=539.63 Aligned_cols=319 Identities=19% Similarity=0.266 Sum_probs=288.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc----CcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHH
Q psy8742 285 IMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGL----EGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVL 360 (968)
Q Consensus 285 ~~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg~----eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~L 360 (968)
.+.+++++++++|++|+++|.||+++.++|++||++|+ .|||++++|+.. ++..+|++++ +||+|+++|
T Consensus 80 ~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~------aL~~~D~v~~-~yR~h~~~L 152 (433)
T PLN02374 80 DLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIK------LLKKDDSVVS-TYRDHVHAL 152 (433)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHH------HcCCCCEEEc-cCcChHHhh
Confidence 45789999999999999999999999999999999875 999999987543 5666788886 999999999
Q ss_pred HHhcCCCHHHHHHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCC-
Q psy8742 361 ANVCRKPLEQIFTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGD- 438 (968)
Q Consensus 361 a~g~gkp~~~ifae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~- 438 (968)
++|+ ++.+||+|+ |+.++.++|+|+ +||+++...++. +..++||.++|+|+|+|+|.|++...
T Consensus 153 a~G~--~~~~~mael~Gk~~g~~~Grgg-smH~~~~~~~~~------------g~~g~lG~~lP~AvGaA~A~k~~~~~~ 217 (433)
T PLN02374 153 SKGV--PARAVMSELFGKATGCCRGQGG-SMHMFSKEHNLL------------GGFAFIGEGIPVATGAAFSSKYRREVL 217 (433)
T ss_pred hcCC--CHHHHHHHHcCCCCCCCCCCCC-cCccCchhhCCC------------CCceeccCchhHHHHHHHHHHHhhccc
Confidence 9966 999999999 988888999987 999987765542 34467899999999999999985321
Q ss_pred -CCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEE
Q psy8742 439 -GEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIF 514 (968)
Q Consensus 439 -~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~ 514 (968)
..+.+.++||++|||+ +++|.|||+||+| +|| +||||+||+|+++|+...+++.+.++++|++||+|++
T Consensus 218 ~~~~~~~vvv~~~GDGa-~~eG~f~EaLn~A~~~~LP------vIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~ 290 (433)
T PLN02374 218 KEESCDDVTLAFFGDGT-CNNGQFFECLNMAALWKLP------IVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGV 290 (433)
T ss_pred cccCCCCEEEEEECCCc-cccChHHHHHHHHHHhCCC------EEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEE
Confidence 1134679999999999 5899999999999 999 9999999999999988777777889999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHH
Q psy8742 515 HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEE 594 (968)
Q Consensus 515 hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~e 594 (968)
+|||+|+++|+++++.|++++|++++|+|||++|||++|||++|++.||+|+|++.|++ +||+.+|+++|+++|++|++
T Consensus 291 ~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GHs~~D~~~YR~~~e~~~~~~-~DPi~~~~~~L~~~gi~te~ 369 (433)
T PLN02374 291 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYAA-RDPIAALKKYLIENGLATEA 369 (433)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecCCcCCCCccccCCHHHHHHHHc-CCcHHHHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999985 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCC
Q psy8742 595 QVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGF 633 (968)
Q Consensus 595 e~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~ 633 (968)
++++|+++++++|++++++|++.|.|+++++++..|.+.
T Consensus 370 e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~~ 408 (433)
T PLN02374 370 ELKAIEKKIDEVVEDAVEFADASPLPPRSQLLENVFADP 408 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhccccCC
Confidence 999999999999999999999999988888888777643
No 12
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1.5e-59 Score=520.78 Aligned_cols=304 Identities=19% Similarity=0.270 Sum_probs=278.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHHHhcC
Q psy8742 290 EDQKRLILARLTRATGFEAFLARKWSSEKRFG----LEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCR 365 (968)
Q Consensus 290 ~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg----~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La~g~g 365 (968)
+|+++++|+.|+++|.||+++.+++++||..| ..|||++.+|+ +.++..+|+++ ++||+|+.+|++|+
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~------~~al~~~D~~~-~~yR~~~~~la~G~- 72 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGL------IAALKPDDYVI-TSYRDHGHALARGV- 72 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHH------HHhCCCCCEEE-echhhHHHHHHcCC-
Confidence 36889999999999999999999999999764 49999998764 45677778777 59999999999977
Q ss_pred CCHHHHHHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCCCCceE
Q psy8742 366 KPLEQIFTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKV 444 (968)
Q Consensus 366 kp~~~ifae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~~~~~ 444 (968)
++.++|+|+ |+.++.++|+|+ ++|+++...++ ++..+++|.+.|+|+|+|+|.|+ .+.+.
T Consensus 73 -~~~~~~~~~~g~~~g~~~Gr~g-~~h~~~~~~~~------------~~~~g~~G~~lp~AiGaa~A~~~-----~~~~~ 133 (315)
T TIGR03182 73 -PPKEVMAELTGRATGCSKGKGG-SMHMFDREKNF------------YGGHGIVGAQVPLATGLAFANKY-----RGNDN 133 (315)
T ss_pred -CHHHHHHHHcCCCCCCCCCCCC-CCCcCchhhCc------------ccCcCcccccccHHHHHHHHHHH-----hCCCC
Confidence 999999999 988899999985 99998876544 34457889999999999999998 45678
Q ss_pred EEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCH
Q psy8742 445 MSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDP 521 (968)
Q Consensus 445 v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~ 521 (968)
++||++|||+| +||.|||+||+| +|| +||||+||+||++|+...+++..+++++|++||+|+++|||+|+
T Consensus 134 ~vv~~~GDGa~-~~g~~~ealn~A~~~~lP------vi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~ 206 (315)
T TIGR03182 134 VTACFFGDGAA-NQGQFYESFNMAALWKLP------VIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDV 206 (315)
T ss_pred EEEEEeCCCcc-cccHHHHHHHHhhccCcC------EEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCH
Confidence 99999999995 899999999999 899 99999999999999988888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHH
Q psy8742 522 EAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKE 601 (968)
Q Consensus 522 eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~ 601 (968)
++|+.+++.|++++|++++|+|||++|||++|||++|++.||+|+||+.|++ +||+.+|+++|+++|++|+++++++++
T Consensus 207 ~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~Yr~~~e~~~~~~-~dPi~~~~~~L~~~g~~~~~~~~~~~~ 285 (315)
T TIGR03182 207 LAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPAKYRSKEEVEEWRK-RDPIEKLKARLIEQGIASEEELKEIDK 285 (315)
T ss_pred HHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCCccccCCHHHHHHHHh-cCHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCccccCC
Q psy8742 602 KYDKICEEAYVNARKETHIKYKDWLDS 628 (968)
Q Consensus 602 e~~~~l~~a~~~A~~~~~~~~~~~~~~ 628 (968)
+++++|+++++.|++.|.|++++.++.
T Consensus 286 ~~~~~v~~a~~~a~~~p~p~~~~~~~~ 312 (315)
T TIGR03182 286 EVRAEVEEAVEFAENSPEPPVEELYTD 312 (315)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHhh
Confidence 999999999999999998888776544
No 13
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=3.5e-57 Score=506.12 Aligned_cols=315 Identities=17% Similarity=0.218 Sum_probs=282.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHH
Q psy8742 286 MNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFG----LEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLA 361 (968)
Q Consensus 286 ~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg----~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La 361 (968)
..+++++++++|+.|+++|.||+++.+++++||..| ..|||++.+|+ +.+++.+|+++ ++||+|+++|+
T Consensus 15 ~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~------~~al~~~D~~~-~~yR~~~~~la 87 (341)
T CHL00149 15 NNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGV------IKLLAETDYVC-STYRDHVHALS 87 (341)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHH------HHhCCCCCEEE-cccccHHHHHH
Confidence 358999999999999999999999999999999765 48999998764 44677778777 59999999999
Q ss_pred HhcCCCHHHHHHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcC--C
Q psy8742 362 NVCRKPLEQIFTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRG--D 438 (968)
Q Consensus 362 ~g~gkp~~~ifae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~--~ 438 (968)
+|+ ++.++|+|+ |+.++.++|+|+ +||+++...++ ++..+++|.+.|.|+|+|+|.+++.. .
T Consensus 88 ~G~--~~~~~~ae~~g~~~g~~~Gr~g-s~H~~~~~~~~------------~~~~g~lG~~lp~AvGaa~A~k~~~~~~~ 152 (341)
T CHL00149 88 KGV--PPKNVMAELFGKETGCSRGRGG-SMHIFSAPHNF------------LGGFAFIGEGIPIALGAAFQSIYRQQVLK 152 (341)
T ss_pred cCC--CHHHHHHHHcCCCCCCCCCCCC-CccccchhcCc------------cCCChhhhccHHHHHHHHHHHHHhccccc
Confidence 977 999999999 998998999985 99998765543 23447889999999999999988421 0
Q ss_pred CCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEE
Q psy8742 439 GEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFH 515 (968)
Q Consensus 439 ~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~h 515 (968)
....+.++||++|||+| ++|.|||+||+| +|| +||||+||+|+++|+...+....+++++|++||+|+++
T Consensus 153 ~~~~~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LP------vifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~ 225 (341)
T CHL00149 153 EVQPLRVTACFFGDGTT-NNGQFFECLNMAVLWKLP------IIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIE 225 (341)
T ss_pred cCCCCCEEEEEeCCchh-hhcHHHHHHHHHhhcCCC------EEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEE
Confidence 01246899999999995 699999999999 899 99999999999999987777778899999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHH
Q psy8742 516 VNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQ 595 (968)
Q Consensus 516 VDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee 595 (968)
|||+|+++|+.+++.|++++|++++|+|||+.|||++||+++|++.||+++|.+.|++ +||+.+|+++|+++|++|+++
T Consensus 226 Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~gHs~~D~~~YR~~~e~~~~~~-~DPi~~~~~~L~~~g~~~~~~ 304 (341)
T CHL00149 226 VDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRGHSLADPDELRSKQEKEAWVA-RDPIKKLKSYIIDNELASQKE 304 (341)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCCCcCCCCCccCCCHHHHHHHhc-CCHHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999985 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCC
Q psy8742 596 VKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPW 630 (968)
Q Consensus 596 ~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w 630 (968)
+++++++++++|++++++|++.|.|++++.+...|
T Consensus 305 ~~~i~~e~~~~v~~a~~~a~~~p~p~~~~~~~~vy 339 (341)
T CHL00149 305 LNKIQREVKIEIEQAVQFAISSPEPNISDLKKYLF 339 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcc
Confidence 99999999999999999999999888877655443
No 14
>KOG0225|consensus
Probab=100.00 E-value=1.3e-57 Score=487.25 Aligned_cols=303 Identities=18% Similarity=0.277 Sum_probs=277.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc----CcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHH
Q psy8742 286 MNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGL----EGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLA 361 (968)
Q Consensus 286 ~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg~----eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La 361 (968)
..+++++.+.+|+.|+++|.||..+..+|...|++|+ .|||++.+|+..+ +...|.+| .+||+|+..+.
T Consensus 54 ~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~a------it~~D~iI-tsYR~Hg~~~~ 126 (394)
T KOG0225|consen 54 VELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAA------ITKSDSII-TSYRCHGWTYL 126 (394)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHh------ccCCCceE-EEeeeeeEEee
Confidence 4589999999999999999999999999999999996 9999999998753 33445566 48999999999
Q ss_pred HhcCCCHHHHHHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCCC
Q psy8742 362 NVCRKPLEQIFTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGE 440 (968)
Q Consensus 362 ~g~gkp~~~ifae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~ 440 (968)
+|+ ++.++|+|+ |+..++++|.|+ +||+..+. |. +..+|| |+|.|+++|+|+|.|+ +
T Consensus 127 ~G~--S~~~v~aEL~Gr~~Gc~kGKGG-SMHmy~k~--Fy------GGnGIV------GAQiPLGaGia~A~kY-----~ 184 (394)
T KOG0225|consen 127 RGV--SVREVLAELMGRQAGCSKGKGG-SMHMYAKN--FY------GGNGIV------GAQIPLGAGIAFAQKY-----N 184 (394)
T ss_pred cCc--cHHHHHHHHhccccccccCCCc-ceeeeccc--cc------Ccccee------ccCCCccccHHHHHHh-----c
Confidence 977 999999999 988999999998 99998763 43 345676 8999999999999999 5
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEe
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVN 517 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVD 517 (968)
+++.|++++.|||| +|||.++|++||| +|| +|||||||.||+.|+..++.+++....++ .| ||+++||
T Consensus 185 ~~~~v~~alYGDGA-aNQGQ~fEa~NMA~LW~LP------~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~Vd 255 (394)
T KOG0225|consen 185 REDAVCFALYGDGA-ANQGQVFEAFNMAALWKLP------VIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVD 255 (394)
T ss_pred cCCceEEEEecccc-ccchhHHHHhhHHHHhCCC------EEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEEC
Confidence 66789999999999 9999999999999 999 99999999999999998888887777777 45 9999999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCC-CCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHH
Q psy8742 518 SDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDE-PMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQV 596 (968)
Q Consensus 518 GnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Dd-p~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~ 596 (968)
|+|+++|.+|++.|++|+++++||+|+|+.|||++|||.+|+ .+||..+|++..++++|||..++++|++.++.|++|+
T Consensus 256 GmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~EL 335 (394)
T KOG0225|consen 256 GMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEEL 335 (394)
T ss_pred CcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHH
Confidence 999999999999999999999999999999999999999998 4699999999999889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcccc
Q psy8742 597 KDVKEKYDKICEEAYVNARKETHIKYKDWL 626 (968)
Q Consensus 597 ~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~ 626 (968)
++|+++++++|++++++|++.|.|.+..++
T Consensus 336 Kai~k~irkeVdeav~~A~~~p~p~~~eL~ 365 (394)
T KOG0225|consen 336 KAIDKEIRKEVDEAVAFATASPEPEPSELF 365 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 999999999999999999999988776653
No 15
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=1.2e-54 Score=477.25 Aligned_cols=284 Identities=21% Similarity=0.285 Sum_probs=260.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccc----cCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHHHhcCCCHHHH
Q psy8742 296 ILARLTRATGFEAFLARKWSSEKRFG----LEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQI 371 (968)
Q Consensus 296 il~~M~~aR~fE~~l~~~~~~~Krfg----~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La~g~gkp~~~i 371 (968)
+|+.|+++|.||+++.+++++||..| ..|||++.+|+. .++..+|++++ +||+|+++|++|+ |+.++
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~------~~l~~~D~~~~-~yR~~~~~la~G~--~~~~~ 71 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVA------AALRPGDWVFP-TYRDHGHALARGV--DLKEM 71 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHH------HHCCCCCEEEe-cchhHHHHHHcCC--CHHHH
Confidence 58999999999999999999999877 599999998653 45666788875 9999999999976 99999
Q ss_pred HHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEe
Q psy8742 372 FTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLH 450 (968)
Q Consensus 372 fae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~h 450 (968)
|+|+ |+.++.++|+| +++|+++...+ +.+..+++|.++|+|+|+|+|.|+ .+.+.++||++
T Consensus 72 ~~e~~g~~~g~~~G~~-g~~h~~~~~~~------------~~~~~g~lG~~~p~a~G~a~a~k~-----~~~~~~vv~~~ 133 (293)
T cd02000 72 LAELFGKETGPCKGRG-GSMHIGDKEKN------------FFGGNGIVGGQVPLAAGAALALKY-----RGEDRVAVCFF 133 (293)
T ss_pred HHHHcCCCCCCCCCCC-CCCCCCchhcC------------ccccccccccchhHHHHHHHHHHH-----hCCCCEEEEEe
Confidence 9999 98889899997 49999876543 456668999999999999999998 35568999999
Q ss_pred CCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHH
Q psy8742 451 GDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHV 527 (968)
Q Consensus 451 GDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a 527 (968)
|||| .+||+|+|+||+| +|| +||||+||+||++|+...+.+.++++++|++||+|+++|||+|+++|+.+
T Consensus 134 GDGa-~~~g~~~E~l~~A~~~~lP------vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a 206 (293)
T cd02000 134 GDGA-TNEGDFHEALNFAALWKLP------VIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEA 206 (293)
T ss_pred CCCc-cccchHHHHHHHHHhhCCC------EEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHH
Confidence 9999 5899999999999 899 99999999999999988777778999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCC-CCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy8742 528 CNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPM-FTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKI 606 (968)
Q Consensus 528 ~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~-yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~ 606 (968)
++.|++++|++++|+|||++|||.+|||++|||. ||+++|++.|++ +||+.+|+++|+++|++|++++++++++++++
T Consensus 207 ~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~~Yr~~~e~~~~~~-~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~ 285 (293)
T cd02000 207 AKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPSRYRTKEEVEEWKK-RDPILRLRKYLIEAGILTEEELAAIEAEVKAE 285 (293)
T ss_pred HHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcccCCCHHHHHHHhc-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999885 999999999984 89999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy8742 607 CEEAYVNA 614 (968)
Q Consensus 607 l~~a~~~A 614 (968)
|++++++|
T Consensus 286 v~~a~~~a 293 (293)
T cd02000 286 VEEAVEFA 293 (293)
T ss_pred HHHHHHhC
Confidence 99998864
No 16
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1.1e-51 Score=462.32 Aligned_cols=301 Identities=18% Similarity=0.191 Sum_probs=266.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHH
Q psy8742 286 MNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFG----LEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLA 361 (968)
Q Consensus 286 ~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg----~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La 361 (968)
+.+++++++++|+.|+++|.||+++..+|++||. | ..|||++.+|+ +.+++.+|++++ +||+|+++|+
T Consensus 19 ~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~------~~al~~~D~~~~-~yR~h~~~l~ 90 (341)
T TIGR03181 19 PDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGS------ALALRKDDWVFP-SYRDHAAMLA 90 (341)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHH------HHHcCCCCEEEc-chhhHHHHHH
Confidence 4689999999999999999999999999999986 4 38999998764 446777788875 9999999999
Q ss_pred HhcCCCHHHHHHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCCC
Q psy8742 362 NVCRKPLEQIFTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGE 440 (968)
Q Consensus 362 ~g~gkp~~~ifae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~ 440 (968)
+|+ ++.++|+|+ |+..+ + ++ ... .++++..|++|.+.|.|+|+|+|.|+ .
T Consensus 91 ~G~--~~~~~~ae~~g~~~g----~-----~~-~~~------------~~~~g~~~~vG~~lp~AiGaAla~k~-----~ 141 (341)
T TIGR03181 91 RGV--PLVEILLYWRGDERG----S-----WD-PEG------------VNILPPNIPIGTQYLHAAGVAYALKL-----R 141 (341)
T ss_pred cCC--CHHHHHHHhcCcCcC----C-----CC-chh------------cCccCCCchHhcchhHHHhHHHHHHh-----h
Confidence 977 999999999 65432 1 11 122 23444557889999999999999998 4
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEe
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVN 517 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVD 517 (968)
+.+.++||++||||| ++|.|+|+||+| +|| +||||+||+|+++|+...+.....++++|++||+|+++||
T Consensus 142 ~~~~~vv~~~GDGa~-~~g~~~EaL~tA~~~~LP------vi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vd 214 (341)
T TIGR03181 142 GEDNVAVTYFGDGGT-SEGDFYEALNFAGVFKAP------VVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVD 214 (341)
T ss_pred CCCCEEEEEecCCcc-ccChHHHHHHHHhccCCC------EEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEEC
Confidence 567899999999995 799999999999 899 9999999999999987666666778999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCC-CCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHH
Q psy8742 518 SDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEP-MFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQV 596 (968)
Q Consensus 518 GnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp-~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~ 596 (968)
|+|+++|+++++.|+++++++++|+|||++|||++|||++|+| .||++++.+.|++ +||+.+|+++|+++|++|++++
T Consensus 215 g~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~-~Dpi~~~~~~L~~~g~~~~~e~ 293 (341)
T TIGR03181 215 GNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWRK-KDPILRLRKYLERKGLWDEEQE 293 (341)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHhc-CCHHHHHHHHHHHCCCCCHHHH
Confidence 9999999999999999999999999999999999999999998 5999999999985 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCC
Q psy8742 597 KDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWS 631 (968)
Q Consensus 597 ~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~ 631 (968)
++++++++++|++++++|++.|.|++++.+...|.
T Consensus 294 ~~i~~~~~~~v~~a~~~a~~~p~P~~~~~~~~vy~ 328 (341)
T TIGR03181 294 EALEEEAEAEVAEAVAEALALPPPPVDDIFDHVYA 328 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccc
Confidence 99999999999999999999999988877665543
No 17
>KOG1182|consensus
Probab=100.00 E-value=1.5e-49 Score=421.16 Aligned_cols=322 Identities=16% Similarity=0.201 Sum_probs=287.6
Q ss_pred ccCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc----CcchhhHHHHHHHHHHhhh
Q psy8742 266 FINSLEQCNWIRQKLETPGIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGL----EGAEILIPAMKQVIDKSTE 341 (968)
Q Consensus 266 hi~~~e~r~Wl~~~~E~~~~~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg~----eG~Ea~i~~l~~li~~a~~ 341 (968)
.+.|.+.+ | |.....+.++.+..++||+.|++...+|+.+..-+++|+ .++ .|.|+.-+ +.|++
T Consensus 66 RV~d~~G~--i---i~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGR-iSFYmT~~GEEa~hi------gSAAA 133 (432)
T KOG1182|consen 66 RVMDADGQ--I---IDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGR-ISFYMTNFGEEAIHI------GSAAA 133 (432)
T ss_pred EEecCCCc--c---cCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcce-EEEEEeccchhhhhh------hhhhh
Confidence 35555544 2 223346889999999999999999999999999887764 443 78898864 57889
Q ss_pred cCCCcEEeccCCccHHHHHHHhcCCCHHHHHHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccc
Q psy8742 342 LGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEA 420 (968)
Q Consensus 342 ~g~~divigm~HRgr~~~La~g~gkp~~~ifae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea 420 (968)
+..+|+++| .||.-+.+|.+|+ ++++++.+. |+..+..+|+. |++|+|+.+.++. +|. |+|..
T Consensus 134 L~p~Dli~g-QYREaGVLlwRgf--tle~f~~qCyGn~~d~gkGrQ-MPvHyGs~elnf~---------tis---splat 197 (432)
T KOG1182|consen 134 LEPQDLIYG-QYREAGVLLWRGF--TLEEFMNQCYGNKSDLGKGRQ-MPVHYGSKELNFV---------TIS---SPLAT 197 (432)
T ss_pred CCccccccc-ccccCceEEEcCc--cHHHHHHHhcCCccccccccc-cccccCccccceE---------Eec---chhhh
Confidence 999999987 8999999999976 999999999 88877778885 7999999887653 343 88999
Q ss_pred cCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCccc
Q psy8742 421 VDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSR 497 (968)
Q Consensus 421 ~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~r 497 (968)
++|.|+|+|+|.|++ ..++.++||+||||| +++|++|.+||+| ..| +||+|-||+|+||||.+++.
T Consensus 198 qlpqAvGaaYa~k~~----~~nnac~V~yfGdG~-aSEGD~HA~~NfAAtle~P------vif~CRNNG~AISTptseQy 266 (432)
T KOG1182|consen 198 QLPQAVGAAYALKMR----KKNNACAVTYFGDGA-ASEGDAHAAFNFAATLECP------VIFFCRNNGWAISTPTSEQY 266 (432)
T ss_pred ccchhhhhhhhhhhc----ccCCeEEEEEecCCc-ccccchhhhhhHHHHhCCC------EEEEEcCCCeeeccccHHHh
Confidence 999999999999984 345589999999999 8999999999999 889 99999999999999999999
Q ss_pred ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCC-CCCHHHHHHHHhCCC
Q psy8742 498 SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPM-FTQPLMYKIIKKTPP 576 (968)
Q Consensus 498 ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~-yt~p~~y~~i~~~~d 576 (968)
.+..++-++.+|||..|+|||||++|||.|++.|.+++-+..+|||||++|||...||++||.+ ||+.+|++.|.+.+.
T Consensus 267 r~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~ 346 (432)
T KOG1182|consen 267 RGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRH 346 (432)
T ss_pred cCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999976 999999999999999
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccc
Q psy8742 577 ALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWL 626 (968)
Q Consensus 577 pi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~ 626 (968)
|+.+|++++.++|+|+++...+++++++++|-++++.|++.++|...+++
T Consensus 347 pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~lF 396 (432)
T KOG1182|consen 347 PISRFRKYIESNGWWSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELF 396 (432)
T ss_pred cHHHHHHHHHhcCCcChhhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHH
Confidence 99999999999999999999999999999999999999988776655444
No 18
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.6e-37 Score=369.62 Aligned_cols=401 Identities=14% Similarity=0.135 Sum_probs=294.1
Q ss_pred CcEEeccCCccHHHHHHHhcCCCHHHHHHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCc
Q psy8742 345 ESVVMGMPHRGRLNVLANVCRKPLEQIFTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDP 423 (968)
Q Consensus 345 ~divigm~HRgr~~~La~g~gkp~~~ifae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~P 423 (968)
|.+++-..||++++.|++|. ++..++++. ++.++.+++.+. .|-. + ..+|.+++.|
T Consensus 64 D~ii~d~ghr~~~~~l~~G~--~~~~~~~~~~g~~~G~~~~~~s--~~~~-----~--------------~~g~~~~~ls 120 (581)
T PRK12315 64 DKIVWDVSHQSYPHKMLTGR--KEAFLDPDHYDDVTGYTNPEES--EHDF-----F--------------TVGHTSTSIA 120 (581)
T ss_pred CcEEEecCCchHHHHHHcCC--ccchhhHHHcCCCCCCCCCCCC--CCCC-----c--------------CCCcHHHHHH
Confidence 45554468999999999976 888888888 888887776652 3321 1 1267789999
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCc-----
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRF----- 495 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~----- 495 (968)
+|+|+|+|.++ .+.+.+++|++|||+ .++|.+||+||+| ++| +|+||+||+|+++++...
T Consensus 121 ~A~G~A~A~k~-----~~~~~~vv~~iGDG~-~~eG~~~EAln~A~~~k~~------li~Ii~dN~~si~~~~~~~~~~l 188 (581)
T PRK12315 121 LATGLAKARDL-----KGEKGNIIAVIGDGS-LSGGLALEGLNNAAELKSN------LIIIVNDNQMSIAENHGGLYKNL 188 (581)
T ss_pred HHHHHHHHHHh-----cCCCCeEEEEECchh-hhcchHHHHHHHHHhhCCC------EEEEEECCCCcCCCCCchhhhhh
Confidence 99999999998 456678999999999 6899999999999 889 999999999999987642
Q ss_pred ----ccccccHhHhhhhcCCcEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHH
Q psy8742 496 ----SRSSSYCTDVARVVNAPIFHV-NSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKI 570 (968)
Q Consensus 496 ----~rss~~~td~Ak~~giP~~hV-DGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~ 570 (968)
........+++++||++++.| ||+|++++++|+++|. +.+||+||++.|||-.|...+. +.-..
T Consensus 189 ~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~----~~~gP~~i~~~T~kG~G~~~~~-------~~~~~ 257 (581)
T PRK12315 189 KELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVK----DIDHPIVLHIHTLKGKGYQPAE-------ENKEA 257 (581)
T ss_pred hhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHH----hCCCCEEEEEEeecCCCCChhh-------cCHHh
Confidence 222334567899999999999 9999999999999863 5789999999999999843110 01112
Q ss_pred HHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcc--ccCCCCCCCCCCCCCCccCCCCCC
Q psy8742 571 IKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKD--WLDSPWSGFFEGKDPLKVSTTGIN 648 (968)
Q Consensus 571 i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~--~~~~~w~~~~~~~~~~~~~~tgv~ 648 (968)
|.. .+| . +... .....|
T Consensus 258 ~h~-~~~-----------------------------------------f-~~~~~~~~~~~~------------------ 276 (581)
T PRK12315 258 FHW-HMP-----------------------------------------F-DLETGQSKVPAS------------------ 276 (581)
T ss_pred cCC-CCC-----------------------------------------C-CcccCcccCCCC------------------
Confidence 221 110 0 0000 000000
Q ss_pred HHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccc
Q psy8742 649 ENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHH 728 (968)
Q Consensus 649 ~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHa 728 (968)
+ ..+ .+ . ++++ +..++.++.+|.+.++|...++
T Consensus 277 --------------~---~~~------~~-------~---------~~~~--l~~~~~~d~~i~~i~~~~~~~~------ 309 (581)
T PRK12315 277 --------------G---ESY------SS-------V---------TLDY--LLKKIKEGKPVVAINAAIPGVF------ 309 (581)
T ss_pred --------------C---cCH------HH-------H---------HHHH--HHHHhccCCCEEEEeCcccccc------
Confidence 0 000 00 0 0111 1233457778889999975432
Q ss_pred eeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccc
Q psy8742 729 VLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAK 808 (968)
Q Consensus 729 v~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~k 808 (968)
.+..+.++| +.|++|++|+|.+++|++.|+|+.|.+|++ ++|.+|+.-| +||+++..-.
T Consensus 310 -------------~~~~f~~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv---~~fs~Fl~ra---~dQi~~d~a~- 368 (581)
T PRK12315 310 -------------GLKEFRKKY-PDQYVDVGIAEQESVAFASGIAANGARPVI---FVNSTFLQRA---YDQLSHDLAI- 368 (581)
T ss_pred -------------CcHHHHHhc-cccccCCCchHHHHHHHHHHHHHCcCeEEE---EeeHHHHHHH---HHHHHHHHHh-
Confidence 236777888 789999999999999999999999999997 8999999888 9999875422
Q ss_pred cccccCcEEEcCccC-CCCCcccCCChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHH
Q psy8742 809 WVRQSGLVMLLPHGL-EGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQI 887 (968)
Q Consensus 809 w~~~~~lv~~lP~G~-~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~ 887 (968)
+..|++++.+|+. .|.||.|+..--..+| .++| ||+|+.|++|.++.++|+.++
T Consensus 369 --~~lpv~~~~~~~g~~~dG~TH~~~~Dia~l-------r~iP----------------nl~V~~P~d~~e~~~~l~~a~ 423 (581)
T PRK12315 369 --NNNPAVMIVFGGSISGNDVTHLGIFDIPMI-------SNIP----------------NLVYLAPTTKEELIAMLEWAL 423 (581)
T ss_pred --cCCCEEEEEECCcccCCCccccccHHHHHH-------hcCC----------------CCEEEecCCHHHHHHHHHHHH
Confidence 3589999999955 5689999988334888 8999 999999999999999999999
Q ss_pred hc-CCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccccCCCCccEEEEecchhHHHHHHHHHhc
Q psy8742 888 AL-PFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDN 960 (968)
Q Consensus 888 ~~-~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~~ 960 (968)
.. + .|++|..||..+...... .++|..+ ... |+.+ .+ +-.|+|+|...+..+++.++.
T Consensus 424 ~~~~--gP~~ir~~r~~~~~~~~~--~~~~~~~-k~~-v~~~-------g~--dvtiia~G~~v~~Al~Aa~~L 482 (581)
T PRK12315 424 TQHE--HPVAIRVPEHGVESGPTV--DTDYSTL-KYE-VTKA-------GE--KVAILALGDFYELGEKVAKKL 482 (581)
T ss_pred hCCC--CcEEEEEcCCccCCCCCC--ccCcccc-eEE-EEec-------CC--CEEEEEEchHHHHHHHHHHHH
Confidence 75 5 899999999987643321 1234332 111 2221 23 458999999998888877653
No 19
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=3.9e-38 Score=337.66 Aligned_cols=201 Identities=22% Similarity=0.351 Sum_probs=166.6
Q ss_pred hhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCcccc
Q psy8742 703 SLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVC 782 (968)
Q Consensus 703 sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~i 782 (968)
.-|.++.+|.|+||||+. + ||+|+.|+||.++||+.||+||||||.++.|.++|+|+.|.||++
T Consensus 14 ~eM~rD~~V~v~GEDVg~--~-------------GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPiv- 77 (324)
T COG0022 14 EEMERDERVVVLGEDVGV--Y-------------GGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIV- 77 (324)
T ss_pred HHHhcCCCEEEEcccccc--c-------------CChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceE-
Confidence 345688899999999964 2 579999999999999999999999999999999999999999999
Q ss_pred ccchhhhhHhhhhHHHHHHHhhh---ccccc--cccCcEEEcCccC-CCCCcccCCChHHHHhcccCCCCcccccccchh
Q psy8742 783 WEAQFGDFNNTAQCIIDQFISSG---QAKWV--RQSGLVMLLPHGL-EGMGPEHSSARLERFLQMSDDEPIRVILVLVPI 856 (968)
Q Consensus 783 WE~qfgDF~~~aQvi~Dq~i~~~---~~kw~--~~~~lv~~lP~G~-~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~ 856 (968)
|+||.||+..| |||++|++ +++.+ ..+|||+|.|.|. .+.|.+||++ +|.|| .|+|
T Consensus 78 -Eiqf~dF~~~a---~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs-~ea~f-------~h~P------ 139 (324)
T COG0022 78 -EIQFADFIYPA---FDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQS-LEALF-------AHIP------ 139 (324)
T ss_pred -EEEecchhHHH---HHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCC-HHHHH-------hcCC------
Confidence 99999999999 99999865 34443 3789999999977 7888999999 99999 8999
Q ss_pred hhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcC-CCCCCCCcccccCCCceEEeccCCCccccC
Q psy8742 857 EFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLR-HPEAKSSFDDMIEGTEFLRVIPDDSISERK 935 (968)
Q Consensus 857 ~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr-~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~ 935 (968)
|||||+||||+|++|||+++|++| +||||||||.||| .+..+. -+ .|.-.|+.... ...
T Consensus 140 ----------GlKVV~PStpyDAKGLL~aAIrd~--dPViflE~k~lY~~~~~eVP-~~------~Y~iPlGkA~i-~re 199 (324)
T COG0022 140 ----------GLKVVMPSTPYDAKGLLKAAIRDP--DPVIFLEHKRLYRSFKGEVP-EE------DYTIPLGKAKI-VRE 199 (324)
T ss_pred ----------CceEEecCChHHHHHHHHHHhcCC--CCEEEEecHHHhcccccCCC-CC------Cccccccceee-Eec
Confidence 999999999999999999999999 9999999999999 455442 22 24344444322 224
Q ss_pred CCCccEEEEecchhHHHHHHHHHh
Q psy8742 936 ADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 936 ~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
.++| -|+++|..-...+++-++
T Consensus 200 G~Dv--Tivtyg~mv~~al~AAe~ 221 (324)
T COG0022 200 GSDV--TIVTYGAMVHTALEAAEE 221 (324)
T ss_pred CCce--EEEEechHHHHHHHHHHH
Confidence 4555 588999855555554443
No 20
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=1.2e-30 Score=312.65 Aligned_cols=360 Identities=14% Similarity=0.198 Sum_probs=255.3
Q ss_pred cCCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCccc
Q psy8742 413 ANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGF 489 (968)
Q Consensus 413 ~NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~ 489 (968)
.++.|++.+.++|+|+|+|.++ ++.+..++|++|||+ .++|.+||+||+| +|| .|+||+||++++
T Consensus 108 ~~~G~~g~~ls~a~G~A~a~~~-----~~~~~~v~~~~GDG~-~~eG~~~Ea~~~a~~~~l~------~i~ii~~N~~~i 175 (617)
T TIGR00204 108 FSAGHSSTSISAGLGIAVAAEK-----KGADRKTVCVIGDGA-ITAGMAFEALNHAGDLKTD------MIVILNDNEMSI 175 (617)
T ss_pred cCCCchHhHHHHHHHHHHHHHh-----hCCCCEEEEEECCcc-cccccHHHHHHHHHhcCCC------EEEEEECCCccc
Confidence 3568999999999999999998 466789999999999 7899999999999 899 999999999999
Q ss_pred ccCCCcccc-------c-----------------c---c-HhHh--------------hhhcCCcEE-EEeCCCHHHHHH
Q psy8742 490 TTDPRFSRS-------S-----------------S---Y-CTDV--------------ARVVNAPIF-HVNSDDPEAVIH 526 (968)
Q Consensus 490 TT~~~~~rs-------s-----------------~---~-~td~--------------Ak~~giP~~-hVDGnD~eAV~~ 526 (968)
+++...... + + . +.++ -+++|+-++ .|||+|+++++.
T Consensus 176 ~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~ 255 (617)
T TIGR00204 176 SENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIE 255 (617)
T ss_pred CCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHH
Confidence 998653211 0 0 0 2233 566899999 899999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy8742 527 VCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKI 606 (968)
Q Consensus 527 a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~ 606 (968)
+.+.|. +.++|++|++.|.|-.|-...- .||.. |. |+-
T Consensus 256 al~~ak----~~~~P~~i~~~T~KGkG~~~~e----------------~~~~~-~H------~~~--------------- 293 (617)
T TIGR00204 256 TLKNAK----KLKGPVFLHIQTKKGKGYKPAE----------------KDPIG-WH------GVG--------------- 293 (617)
T ss_pred HHHHHh----cCCCCEEEEEEecCCCCCchhh----------------cChhh-cc------CCC---------------
Confidence 988553 5578999999999988833210 11111 00 000
Q ss_pred HHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhh
Q psy8742 607 CEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMV 686 (968)
Q Consensus 607 l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~ 686 (968)
.+++.. .+. +... .+..+ .. -
T Consensus 294 ------------~~~~~~----~~~----~~~~----~~~~~--~~----------------~----------------- 314 (617)
T TIGR00204 294 ------------PFDLST----GCL----PKSK----SALPS--YS----------------K----------------- 314 (617)
T ss_pred ------------CCChhh----CCc----CCCC----CCCcc--HH----------------H-----------------
Confidence 000000 000 0000 00000 00 0
Q ss_pred hhhchhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHH
Q psy8742 687 ESRTVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVL 766 (968)
Q Consensus 687 ~~~~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avl 766 (968)
+++++| ..++.+..+|.+...|...+| -+.++.++| +.|++|++|+|.+++
T Consensus 315 -------a~~~~L--~~~~~~d~~iv~i~ad~~~~~-------------------~~~~f~~~f-P~R~~d~GIaEq~~v 365 (617)
T TIGR00204 315 -------IFSDTL--CELAKKDNKIVGITPAMPEGS-------------------GLDKFSRKF-PDRYFDVAIAEQHAV 365 (617)
T ss_pred -------HHHHHH--HHHHhhCcCEEEEECCccCCc-------------------ChHHHHHHC-ccccccCCccHHHHH
Confidence 111221 123345667778888875432 267888899 899999999999999
Q ss_pred HHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cCCCC-CcccCCChHH-HHhcccC
Q psy8742 767 GFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GLEGM-GPEHSSARLE-RFLQMSD 843 (968)
Q Consensus 767 G~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~~g~-GpeHSs~r~e-r~lql~~ 843 (968)
|++.|+|+.|.+|++ ++ |++|+.-| +||+++..-. ...|++++.+| |+.|. ||.|++. .+ .+|
T Consensus 366 g~AaGlA~~G~~Pvv--~~-~a~Fl~ra---~dQi~~~~a~---~~lpV~i~~~~~G~~g~dG~tH~~~-~dia~l---- 431 (617)
T TIGR00204 366 TFAAGMAIEGYKPFV--AI-YSTFLQRA---YDQVVHDVCI---QKLPVLFAIDRAGIVGADGETHQGA-FDISYL---- 431 (617)
T ss_pred HHHHHHHHCCCEEEE--Ee-cHHHHHHH---HHHHHHHHHh---cCCCEEEEEECCCcCCCCCcccccc-hHHHHH----
Confidence 999999999999999 98 99999888 9999875422 25899999997 66554 9999998 66 888
Q ss_pred CCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCCCceE
Q psy8742 844 DEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFL 923 (968)
Q Consensus 844 ~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~ 923 (968)
.++| ||+|+.|++|.|++++|+.+++.+ ..|++|..||..+...........+..|. ++
T Consensus 432 ---r~iP----------------gl~V~~Psd~~e~~~~l~~a~~~~-~~Pv~ir~~r~~~~~~~~~~~~~~~~~Gk-~~ 490 (617)
T TIGR00204 432 ---RCIP----------------NMVIMAPSDENELRQMLYTGYHYD-DGPIAVRYPRGNAVGVELTPEPEKLPIGK-SE 490 (617)
T ss_pred ---hcCC----------------CcEEEeeCCHHHHHHHHHHHHhCC-CCCEEEEEccCCcCCcccCCccccccCCc-eE
Confidence 8999 999999999999999999999732 28999999998763211111112232232 32
Q ss_pred EeccCCCccccCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 924 RVIPDDSISERKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 924 ~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
|+.+ .+ +-+|+++|...+..+++.++
T Consensus 491 -vlr~-------G~--dvtIva~G~~v~~al~Aa~~ 516 (617)
T TIGR00204 491 -VLRK-------GE--KILILGFGTLVPEALEVAES 516 (617)
T ss_pred -EEEc-------CC--CEEEEEcCHHHHHHHHHHHH
Confidence 2221 23 34899999999988877654
No 21
>PRK05899 transketolase; Reviewed
Probab=99.97 E-value=2.2e-29 Score=302.95 Aligned_cols=393 Identities=16% Similarity=0.150 Sum_probs=258.3
Q ss_pred CCCCccccCchhhhHhhHhHhhcCCC-----CCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcC
Q psy8742 414 NPSHLEAVDPVVQGKTRAEQFYRGDG-----EGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNN 485 (968)
Q Consensus 414 NpShLea~~PvA~G~A~A~q~~~~~~-----~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNN 485 (968)
..++||.+.|.|+|+|+|.++....- ...+..++|++|||+ ..+|.++|+|+.| +|| -+|+||.||
T Consensus 116 ~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~-~~~g~~~Eal~~A~~~~L~-----~li~v~dnN 189 (624)
T PRK05899 116 TTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGD-LMEGISHEACSLAGHLKLG-----NLIVIYDDN 189 (624)
T ss_pred CCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcch-hhchHHHHHHHHHHHhCCC-----CEEEEEECC
Confidence 35899999999999999998742100 011578999999999 5899999999999 787 389999999
Q ss_pred CcccccCCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCC-CCCC
Q psy8742 486 QIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEP-MFTQ 564 (968)
Q Consensus 486 qig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp-~yt~ 564 (968)
+|+++++.... ....+.++++++|++++.|||+|++++..|.+.|.+ .++|++|++.|+|-+||+..+++ .|..
T Consensus 190 ~~~~~~~~~~~-~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H~ 264 (624)
T PRK05899 190 RISIDGPTEGW-FTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVHG 264 (624)
T ss_pred CCccccccccc-ccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEeccCCccccCCCcccC
Confidence 99999876643 346788999999999999999999999999998874 25899999999999999855433 2321
Q ss_pred ----HHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCC
Q psy8742 565 ----PLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPL 640 (968)
Q Consensus 565 ----p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~ 640 (968)
+++++.+.+ +| + ++. +..++.+ .+.+.++.+.+.+... ...|....
T Consensus 265 ~~~~~~~~~~~~~----------~l---~-~~~-~~~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~~~------ 314 (624)
T PRK05899 265 APLGAEEIAAAKK----------EL---G-WDY-EPFEVPE----EVYAHWRKAKERGAKA-----EAEWNEKF------ 314 (624)
T ss_pred CCCCHHHHHHHHH----------Hc---C-CCc-ccccCCh----HHHHHHHHhhhcCchh-----HHHHHHhh------
Confidence 122222211 01 1 000 0000111 1111111111100000 00010000
Q ss_pred ccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhhhhcCCcEEEeccccCC
Q psy8742 641 KVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSLLKEGIHVRLSGQDVER 720 (968)
Q Consensus 641 ~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~r 720 (968)
. .+.+.-| -+++++| ..|+.+..+|.+.++|+..
T Consensus 315 -----------------------------~-----~~~~~~~----------~a~~~~l--~~l~~~~~~v~vl~~D~~~ 348 (624)
T PRK05899 315 -----------------------------A-----GEKVATR----------KASGKAL--NALAKALPELVGGSADLAG 348 (624)
T ss_pred -----------------------------c-----ccchHHH----------HHHHHHH--HHHHhhCCCEEEEeCCCcc
Confidence 0 0000001 1122222 3455678899999999987
Q ss_pred CccccccceeeeeccCCceeecCCCCC-CCCCCcEeecCCcchHHHHHHhhhcccCC-CCcccccc--chhhhhHhhhhH
Q psy8742 721 GTFSHRHHVLHHQTVDKATYRPLNNLY-PDQAPYTVCNSSLSEFGVLGFELGFSMTN-PNTLVCWE--AQFGDFNNTAQC 796 (968)
Q Consensus 721 GtFshRHav~~dq~~~~~~~~~~~~l~-~~~g~~~v~nspLsE~avlG~~~G~s~~g-~~~l~iWE--~qfgDF~~~aQv 796 (968)
+++ ...+. .+.+. ++| +.|++|++|+|.+++|++.|+|+.| .+|++ + ++|.||+
T Consensus 349 ~~~-------------~~~~~-~~~f~~~~~-p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~--~t~~~F~~r~----- 406 (624)
T PRK05899 349 SNN-------------TKIKG-SKDFAPEDY-SGRYIHYGVREFAMAAIANGLALHGGFIPFG--GTFLVFSDYA----- 406 (624)
T ss_pred ccC-------------ccccc-ccccCccCC-CCCeeeeChhHHHHHHHHHHHHHcCCCeEEE--EEcHHHHHHH-----
Confidence 664 11222 22222 133 5899999999999999999999999 99999 8 8998876
Q ss_pred HHHHHHhhhccccccccCcEEEcCc-cC-CC-CCcccCCChHHH--HhcccCCCCcccccccchhhhhhhcccCCCeEEE
Q psy8742 797 IIDQFISSGQAKWVRQSGLVMLLPH-GL-EG-MGPEHSSARLER--FLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIA 871 (968)
Q Consensus 797 i~Dq~i~~~~~kw~~~~~lv~~lP~-G~-~g-~GpeHSs~r~er--~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~ 871 (968)
+||+...+ . ...|++++..| |+ .| .||.| ++ +|. ++ .++| ||+|+
T Consensus 407 -~~qir~~~--~--~~~pv~~v~~~~G~~~g~~G~tH-q~-~edia~~-------r~iP----------------~~~V~ 456 (624)
T PRK05899 407 -RNAIRLAA--L--MKLPVIYVFTHDSIGVGEDGPTH-QP-VEQLASL-------RAIP----------------NLTVI 456 (624)
T ss_pred -HHHHHHHH--h--cCCCEEEEEECCCcCcCCCCCCc-cc-HHHHHHH-------HhCC----------------CcEEE
Confidence 45554322 1 34688888655 76 34 69999 77 894 77 7899 99999
Q ss_pred ecCCHhHHHHHHHHHHhc-CCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccccCCCCccEEEEecchhH
Q psy8742 872 NCTTPANLFHILRRQIAL-PFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVY 950 (968)
Q Consensus 872 ~pstpa~~~hlLr~q~~~-~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~v~rvilcsGkvy 950 (968)
.|++|.++..+|+.+++. + +|++|..++.-.......++...+..|. .++.+ .+ +-+|+++|-.-
T Consensus 457 ~P~d~~e~~~~l~~a~~~~~--~P~~ir~~r~~~~~~~~~~~~~~~~~G~---~~l~~-------G~--dvtiia~G~~v 522 (624)
T PRK05899 457 RPADANETAAAWKYALERKD--GPSALVLTRQNLPVLERTAQEEGVAKGG---YVLRD-------DP--DVILIATGSEV 522 (624)
T ss_pred eCCCHHHHHHHHHHHHHcCC--CCEEEEEeCCCCCCcCCccccccccCCc---EEEec-------CC--CEEEEEeCHHH
Confidence 999999999999999987 7 9999999875432111000112232231 33322 12 35899999998
Q ss_pred HHHHHHHHh
Q psy8742 951 YDLIKARND 959 (968)
Q Consensus 951 ydl~~~r~~ 959 (968)
+..+++.+.
T Consensus 523 ~~al~Aa~~ 531 (624)
T PRK05899 523 HLALEAADE 531 (624)
T ss_pred HHHHHHHHH
Confidence 888877654
No 22
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.97 E-value=9.4e-29 Score=295.26 Aligned_cols=361 Identities=16% Similarity=0.212 Sum_probs=257.6
Q ss_pred cCCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCccc
Q psy8742 413 ANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGF 489 (968)
Q Consensus 413 ~NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~ 489 (968)
...+|||.+.|+|+|+|+|.++. .+.+..++|++|||+ ..+|.++|+|++| ++| +|+||.||+|++
T Consensus 114 ~~~G~lG~gl~~AvG~A~a~~~~----~~~~~~v~~i~GDG~-l~eG~~~Eal~~A~~~~~n------li~IvdnN~~~i 182 (580)
T PRK05444 114 FGAGHSSTSISAALGMAKARDLK----GGEDRKVVAVIGDGA-LTGGMAFEALNNAGDLKSD------LIVILNDNEMSI 182 (580)
T ss_pred ECCChHHHHHHHHHHHHHHHHhh----CCCCCeEEEEEcccc-cccCHHHHHHHHHHhhCCC------EEEEEECCCCcC
Confidence 34589999999999999999883 134567999999999 5799999999999 788 999999999999
Q ss_pred ccCCCcc---cccccHhHhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCC-CCCCCC
Q psy8742 490 TTDPRFS---RSSSYCTDVARVVNAPIF-HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEID-EPMFTQ 564 (968)
Q Consensus 490 TT~~~~~---rss~~~td~Ak~~giP~~-hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~D-dp~yt~ 564 (968)
+++.... .......+++++||++++ .|||+|+++++.|.+.|. +.++|++|++.|+|-.|..... ++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~----~~~~P~lI~~~T~kg~G~~~~e~~~~--- 255 (580)
T PRK05444 183 SPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAK----DLKGPVLLHVVTKKGKGYAPAEADPI--- 255 (580)
T ss_pred CCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHH----hCCCCEEEEEEecCCcCCChhhcCcc---
Confidence 9876543 122456689999999999 589999999998887665 4579999999999999864321 110
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCccCC
Q psy8742 565 PLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVST 644 (968)
Q Consensus 565 p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 644 (968)
.|. ..| ..+++ . ..... +.
T Consensus 256 -----~~h--~~~------------~~~~~-~------------------~~~~~----------------~~------- 274 (580)
T PRK05444 256 -----KYH--GVG------------KFDPE-T------------------GEQPK----------------SS------- 274 (580)
T ss_pred -----ccC--CCC------------CCCcc-c------------------CCccc----------------cC-------
Confidence 121 111 00000 0 00000 00
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhhhhcCCcEEEeccccCCCccc
Q psy8742 645 TGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFS 724 (968)
Q Consensus 645 tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFs 724 (968)
.....+. ...+...|. .++.+..+|.+.+.|...|+
T Consensus 275 ~~~~~~~----------------~~~~~~~L~--------------------------~~~~~~~~vv~~~adl~~~~-- 310 (580)
T PRK05444 275 KPGKPSY----------------TKVFGETLC--------------------------ELAEKDPKIVAITAAMPEGT-- 310 (580)
T ss_pred CCCcccH----------------HHHHHHHHH--------------------------HHHhhCCCEEEEECCcCCCC--
Confidence 0000000 011112222 23345667778888975432
Q ss_pred cccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhh
Q psy8742 725 HRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISS 804 (968)
Q Consensus 725 hRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~ 804 (968)
-+..+.++| +.|++|++|+|.+++|++.|+|+.|.+|++ +. |.+|+.-| +||+++.
T Consensus 311 -----------------~~~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~--~~-f~~F~~ra---~dQi~~~ 366 (580)
T PRK05444 311 -----------------GLVKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVV--AI-YSTFLQRA---YDQVIHD 366 (580)
T ss_pred -----------------CHHHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEE--Ee-eHHHHHHH---HHHHHHH
Confidence 123366777 789999999999999999999999999999 98 99999877 9999885
Q ss_pred hccccccccCcEEEcCc-cCCC-CCcccCCChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHH
Q psy8742 805 GQAKWVRQSGLVMLLPH-GLEG-MGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHI 882 (968)
Q Consensus 805 ~~~kw~~~~~lv~~lP~-G~~g-~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hl 882 (968)
.-. ...|++++.+| |+.| .||.|++.--..+| .++| ||+|+.|++|.+++.+
T Consensus 367 ~a~---~~~pv~~v~~~~G~~g~dG~tH~~~edia~l-------r~iP----------------~l~V~~Psd~~e~~~~ 420 (580)
T PRK05444 367 VAL---QNLPVTFAIDRAGLVGADGPTHQGAFDLSYL-------RCIP----------------NMVIMAPSDENELRQM 420 (580)
T ss_pred hhh---cCCCEEEEEeCCCcCCCCCccccccHHHHHH-------hcCC----------------CCEEEeeCCHHHHHHH
Confidence 422 35899999997 5655 48999998323788 8899 9999999999999999
Q ss_pred HHHHHhc-CCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccccCCCCccEEEEecchhHHHHHHHHHhc
Q psy8742 883 LRRQIAL-PFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDN 960 (968)
Q Consensus 883 Lr~q~~~-~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~~ 960 (968)
|+.++.. + +|++|..++.++... ......+|.-|. .+- +.+ .+ +-.|+++|-..+..+++.++.
T Consensus 421 l~~a~~~~~--~P~~ir~~r~~~~~~-~~~~~~~~~~Gk-~~v-l~~-------G~--dvtIia~G~~v~~al~Aa~~L 485 (580)
T PRK05444 421 LYTALAYDD--GPIAIRYPRGNGVGV-ELPELEPLPIGK-GEV-LRE-------GE--DVAILAFGTMLAEALKAAERL 485 (580)
T ss_pred HHHHHhCCC--CcEEEEecCCCCCCC-CCCCcccccCCc-eEE-EEc-------CC--CEEEEEccHHHHHHHHHHHHh
Confidence 9999965 6 999999999887421 111112332232 222 221 22 348999999999998887764
No 23
>KOG0525|consensus
Probab=99.97 E-value=1.5e-31 Score=276.46 Aligned_cols=162 Identities=27% Similarity=0.396 Sum_probs=145.1
Q ss_pred cCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCccccccch
Q psy8742 707 EGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQ 786 (968)
Q Consensus 707 eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE~q 786 (968)
.++.-.++||||+-| |+|..+.+|.++||+.||+||||+|.+|+||.+|.+..|.+.++ |+|
T Consensus 57 tdp~a~vfgedv~fg----------------gvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aia--eiq 118 (362)
T KOG0525|consen 57 TDPRAVVFGEDVAFG----------------GVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIA--EIQ 118 (362)
T ss_pred cCCceEEeccccccc----------------eEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEE--EEe
Confidence 455666999999853 69999999999999999999999999999999999999999999 999
Q ss_pred hhhhHhhhhHHHHHHHhhhcccccc-------ccCcEEEcCccCCCCC-cccCCChHHHHhcccCCCCcccccccchhhh
Q psy8742 787 FGDFNNTAQCIIDQFISSGQAKWVR-------QSGLVMLLPHGLEGMG-PEHSSARLERFLQMSDDEPIRVILVLVPIEF 858 (968)
Q Consensus 787 fgDF~~~aQvi~Dq~i~~~~~kw~~-------~~~lv~~lP~G~~g~G-peHSs~r~er~lql~~~~~~~~p~~~~~~~~ 858 (968)
|+||...| +||++|.+ +|+++ +.+|++|.|.|..|.| .+|||+ .|+|| .|+|
T Consensus 119 fadyifpa---fdqivnea-akfryrsgnqfncg~ltir~p~gavghg~~yhsqs-peaff-------~h~p-------- 178 (362)
T KOG0525|consen 119 FADYIFPA---FDQIVNEA-AKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQS-PEAFF-------CHVP-------- 178 (362)
T ss_pred eccccchh---HHHHHHHH-HhheeccCCccccCceEEeccccccccccccccCC-chhhe-------ecCC--------
Confidence 99999999 99999976 34432 3479999999998887 599999 99999 8999
Q ss_pred hhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccc
Q psy8742 859 AVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDM 916 (968)
Q Consensus 859 ~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~ 916 (968)
|++||.|.+|-|+++||.++|+++ +|+|||+||.|||....-.|.+|+
T Consensus 179 --------gikvviprsp~qakglllscirdp--np~iffepk~lyr~a~edvp~~dy 226 (362)
T KOG0525|consen 179 --------GIKVVIPRSPRQAKGLLLSCIRDP--NPCIFFEPKILYRQAVEDVPEGDY 226 (362)
T ss_pred --------CceEEecCCcchhhceeeeeccCC--CceEEechHHHHHHhhhhCCCCCc
Confidence 999999999999999999999999 999999999999976554444444
No 24
>KOG0524|consensus
Probab=99.96 E-value=8.9e-30 Score=267.03 Aligned_cols=202 Identities=19% Similarity=0.274 Sum_probs=169.5
Q ss_pred hhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCcccccc
Q psy8742 705 LKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWE 784 (968)
Q Consensus 705 l~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE 784 (968)
|..+.+|.++||||+. | +|.|++++||.++||+.||+||||+|.++.|+++|+|+.|.||++ |
T Consensus 49 m~rD~~VfvmGEeV~q--y-------------~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~--e 111 (359)
T KOG0524|consen 49 MDRDPRVFVMGEEVGQ--Y-------------GGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPIC--E 111 (359)
T ss_pred hccCCcEEEechhhhh--c-------------CCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhh--h
Confidence 3567788899999986 3 469999999999999999999999999999999999999999999 9
Q ss_pred chhhhhHhhhhHHHHHHHhhh---ccccc--cccCcEEEcCccC-CCCCcccCCChHHHHhcccCCCCcccccccchhhh
Q psy8742 785 AQFGDFNNTAQCIIDQFISSG---QAKWV--RQSGLVMLLPHGL-EGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEF 858 (968)
Q Consensus 785 ~qfgDF~~~aQvi~Dq~i~~~---~~kw~--~~~~lv~~lP~G~-~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~ 858 (968)
.|.-+|+..| |||+|||+ .++.+ +.+|+|+|-|.|. .|.|++|||+ ++.|+ .++|
T Consensus 112 fMtfnFsmqA---id~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~-f~~wy-------~siP-------- 172 (359)
T KOG0524|consen 112 FMTFNFSMQA---IDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQD-FASWY-------GSIP-------- 172 (359)
T ss_pred hhcchhHHHH---HHHHHHHHHHHhcccCCceeccEEEeCCCCcccchhhhhhhh-hHHHh-------ccCC--------
Confidence 9999999999 99999975 34444 3689999999999 7999999999 99999 6789
Q ss_pred hhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccccCCCC
Q psy8742 859 AVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADS 938 (968)
Q Consensus 859 ~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~ 938 (968)
|+|||.|.||.|++|||+.+||++ +||||+|+..||..+...+. +.+++ .|.-.|+.... ....+.
T Consensus 173 --------GlkvvapysaedakGLlKaAIRd~--NPVV~lEnelLYg~~f~i~~-E~ls~--~fv~p~gkAki-er~G~~ 238 (359)
T KOG0524|consen 173 --------GLKVVAPYSAEDAKGLLKAAIRDE--NPVVFLENELLYGLSFEIPE-EALSK--DFVLPLGKAKI-EREGTH 238 (359)
T ss_pred --------CceEeccCChhhhhhHHHHhccCC--CCeEEEechhhcCCCccCCh-hhcCc--ceeeeccceee-eecCCc
Confidence 999999999999999999999999 99999999999998876532 33432 47777766533 235566
Q ss_pred ccEEEEecchhHHHHHHHH
Q psy8742 939 VEKLVFCSGKVYYDLIKAR 957 (968)
Q Consensus 939 v~rvilcsGkvyydl~~~r 957 (968)
|+ +|--|-.|++.|.++.
T Consensus 239 iT-ivt~Sr~v~~~leAA~ 256 (359)
T KOG0524|consen 239 IT-IVTYSRMVGHCLEAAE 256 (359)
T ss_pred eE-EEEechhHHHHHHHHH
Confidence 64 4555666777665543
No 25
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.96 E-value=1.1e-25 Score=271.73 Aligned_cols=424 Identities=14% Similarity=0.136 Sum_probs=262.9
Q ss_pred eecCCCCccccCchhhhHhhHhHhhcC---C--CCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEE
Q psy8742 411 VVANPSHLEAVDPVVQGKTRAEQFYRG---D--GEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIV 482 (968)
Q Consensus 411 i~~NpShLea~~PvA~G~A~A~q~~~~---~--~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVV 482 (968)
+-...++||.+.|+|+|+|+|.|+... . ....+..++|++|||+ ..||++||++|+| +|| -+|+||
T Consensus 105 i~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~-l~EG~~~EA~~~A~~~~L~-----nLi~iv 178 (653)
T TIGR00232 105 VEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGC-LQEGISYEVASLAGHLKLG-----KLIVLY 178 (653)
T ss_pred eeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEcccc-ccccHHHHHHHHHHHhCCC-----cEEEEE
Confidence 444557899999999999999998531 1 1134678999999999 7999999999999 888 478889
Q ss_pred EcCCcccccCCCcccccccHhHhhhhcCCcEEEE-eCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEEeecCCCCC--CCC
Q psy8742 483 VNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHV-NSDDPEAVIHVCNLAAEWRNTF-HKDVVIDIVSYRRNGHN--EID 558 (968)
Q Consensus 483 eNNqig~TT~~~~~rss~~~td~Ak~~giP~~hV-DGnD~eAV~~a~~~Ave~rr~~-~gPvlIel~tYR~~GHn--e~D 558 (968)
.||+|+++++..+.. ...+.++.++||++++.| ||+|++++++|.+.|. +. ++|++|++.|+|.+|.+ |..
T Consensus 179 d~N~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~----~~~~~P~~I~~~T~~g~G~~~~e~~ 253 (653)
T TIGR00232 179 DSNRISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAK----ASKDKPTLIEVTTTIGFGSPNKAGT 253 (653)
T ss_pred eCCCeeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH----hCCCCCEEEEEEeeecccCcccCCC
Confidence 999999999988876 567899999999999999 9999999988777663 44 48999999999999986 322
Q ss_pred CCC---CCCHHHHHHHHhC----C-------CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcc
Q psy8742 559 EPM---FTQPLMYKIIKKT----P-------PALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKD 624 (968)
Q Consensus 559 dp~---yt~p~~y~~i~~~----~-------dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~ 624 (968)
... --.+++++..++. . ++...|+..+.++|- +..+++.+.+++..+. .| ....
T Consensus 254 ~~~H~~~~~~~~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~-------~~~~~w~~~~~~~~~~---~p--~~~~ 321 (653)
T TIGR00232 254 HGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGA-------KAEQEWNELFAAYKKK---YP--ELAA 321 (653)
T ss_pred CcccCCCCCHHHHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccH-------HHHHHHHHHHHHHHHH---CH--HHHH
Confidence 221 1234455543321 1 222333333333331 1112222222211110 00 0000
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhh
Q psy8742 625 WLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSL 704 (968)
Q Consensus 625 ~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sL 704 (968)
.+...+++ .++.+.... +| .+. ...+.+.-|. +++++| ..|
T Consensus 322 ~~~~~~~~-------------~~p~~~~~~-------~~----~~~---~~~~~~atR~----------~~g~~L--~~l 362 (653)
T TIGR00232 322 EFTRRLSG-------------ELPADWDKK-------LP----EFK---AKLQALATRK----------YSQNVL--NAI 362 (653)
T ss_pred HHHHHHhc-------------cCchhhhhh-------hh----hhh---ccCcchHHHH----------HHHHHH--HHH
Confidence 00000000 000000000 00 000 0000001111 112222 123
Q ss_pred hhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhccc-CCCCccccc
Q psy8742 705 LKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSM-TNPNTLVCW 783 (968)
Q Consensus 705 l~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~-~g~~~l~iW 783 (968)
.....+|.+..-|+..-|. + .......+.++| +.|.+|.-|+|.+.+|++.|+|+ .|.+|++.-
T Consensus 363 a~~~p~iv~lsaDl~~s~~-----------~---~~~~~~~f~~~~-p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~~~t 427 (653)
T TIGR00232 363 ANVLPELLGGSADLAPSNL-----------T---KWKGSGDLHENP-LGNYIHYGVREFAMGAIMNGIALHGGFKPYGGT 427 (653)
T ss_pred HhhCCCEEEEeCCccccCC-----------c---ccccccchhhcC-CCCeEeecccHHHHHHHHHHHHHcCCCeEEEEE
Confidence 3456677777788754321 0 000111144555 56899999999999999999999 678999866
Q ss_pred cchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cC--CCCCcccCCChHHH--HhcccCCCCcccccccchhhh
Q psy8742 784 EAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GL--EGMGPEHSSARLER--FLQMSDDEPIRVILVLVPIEF 858 (968)
Q Consensus 784 E~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~--~g~GpeHSs~r~er--~lql~~~~~~~~p~~~~~~~~ 858 (968)
-++|.||+ .||+-..+-. ..|++++..| |+ ..-||.| |+ +|- +| ..+|
T Consensus 428 f~~F~~r~------~~~ir~~a~~----~lpV~~v~th~g~~~G~dG~TH-q~-iedia~l-------r~iP-------- 480 (653)
T TIGR00232 428 FLMFVDYA------RPAIRLAALM----KLPVIYVYTHDSIGVGEDGPTH-QP-IEQLASL-------RAIP-------- 480 (653)
T ss_pred hHHHHHHH------HHHHHHHHhc----CCCEEEEEeCCccCCCCCCccc-CC-HHHHHHH-------hcCC--------
Confidence 66676655 4555433322 3699999987 44 3358999 77 887 55 6789
Q ss_pred hhhcccCCCeEEEecCCHhHHHHHHHHHH-hcCCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccccCCC
Q psy8742 859 AVRQLHDINWIIANCTTPANLFHILRRQI-ALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKAD 937 (968)
Q Consensus 859 ~~~~~~~~n~~V~~pstpa~~~hlLr~q~-~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~ 937 (968)
||+|+.|+++.++..+++.++ ..+ .|++|..++.-+..... .+..++..|. .++-+. +..
T Consensus 481 --------n~~v~~PaD~~E~~~~~~~a~~~~~--gP~~irl~r~~~~~~~~-~~~~~~~~G~---~vl~~~-----~g~ 541 (653)
T TIGR00232 481 --------NLSVWRPCDGNETAAAWKYALESQD--GPTALILSRQNLPQLEE-SSLEKVLKGG---YVLKDS-----KGP 541 (653)
T ss_pred --------CCEEEeeCCHHHHHHHHHHHHhcCC--CcEEEEEcCCccCCCCc-ccccccCCCc---EEEEec-----CCC
Confidence 999999999999999999999 445 89999998875532221 1223344443 333211 122
Q ss_pred CccEEEEecchhHHHHHHHHHh
Q psy8742 938 SVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 938 ~v~rvilcsGkvyydl~~~r~~ 959 (968)
+-+|+++|-.....+++.++
T Consensus 542 --dv~iia~G~~v~~al~Aa~~ 561 (653)
T TIGR00232 542 --DIILIATGSEVSLAVEAAKK 561 (653)
T ss_pred --CEEEEEeChHHHHHHHHHHH
Confidence 34899999988888776654
No 26
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.96 E-value=5.2e-26 Score=273.76 Aligned_cols=354 Identities=18% Similarity=0.204 Sum_probs=248.6
Q ss_pred cccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCC-
Q psy8742 419 EAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPR- 494 (968)
Q Consensus 419 ea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~- 494 (968)
+...++++|+|+|.++ .+.+..++|++|||++ .+|.++|+||+| ++| +|+||.||++.++++..
T Consensus 122 ~gslg~a~G~A~a~~~-----~~~~~~v~~v~GDG~~-~eG~~~Eal~~a~~~~~~------li~I~dnN~~~i~~~~~~ 189 (641)
T PRK12571 122 STSISAALGFAKARAL-----GQPDGDVVAVIGDGSL-TAGMAYEALNNAGAADRR------LIVILNDNEMSIAPPVGA 189 (641)
T ss_pred cChHHHHHHHHHHHHH-----hCCCCeEEEEEeCchh-hcchHHHHHHHHHHhCCC------EEEEEECCCeeecCCccH
Confidence 4556899999999998 3456789999999995 799999999999 788 99999999999998874
Q ss_pred ------ccccc-cc----------------------------------HhHhhhhcCCcEE-EEeCCCHHHHHHHHHHHH
Q psy8742 495 ------FSRSS-SY----------------------------------CTDVARVVNAPIF-HVNSDDPEAVIHVCNLAA 532 (968)
Q Consensus 495 ------~~rss-~~----------------------------------~td~Ak~~giP~~-hVDGnD~eAV~~a~~~Av 532 (968)
+-+.. .| ..++-+++|+-++ .|||+|++++..|.+.|.
T Consensus 190 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak 269 (641)
T PRK12571 190 LAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAAR 269 (641)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHH
Confidence 22222 11 1367789999999 799999999999998875
Q ss_pred HHhhcCCCcEEEEEEeecCCCCCCCCC-CCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy8742 533 EWRNTFHKDVVIDIVSYRRNGHNEIDE-PMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAY 611 (968)
Q Consensus 533 e~rr~~~gPvlIel~tYR~~GHne~Dd-p~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~ 611 (968)
+. .++|++|.+.|-.-.|-+...+ +. .| |--|
T Consensus 270 ~~---~~~P~~I~~~T~kGkG~~~~e~~~~--------~~--Hg~~---------------------------------- 302 (641)
T PRK12571 270 AR---ADGPVLVHVVTEKGRGYAPAEADED--------KY--HAVG---------------------------------- 302 (641)
T ss_pred hC---CCCCEEEEEEecCccCcchhhcCCC--------cc--cCCC----------------------------------
Confidence 31 4789999999998888642211 10 12 1111
Q ss_pred HHHhhccCCCCccccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhch
Q psy8742 612 VNARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTV 691 (968)
Q Consensus 612 ~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~i 691 (968)
+. +.... . . . . ... ..| ...+ .+
T Consensus 303 ------~f-~~~~~-----~-~---~-~----~~~--------------~~~----------~~~~-------~f----- 325 (641)
T PRK12571 303 ------KF-DVVTG-----L-Q---K-K----SAP--------------SAP----------SYTS-------VF----- 325 (641)
T ss_pred ------Cc-CCCCC-----c-c---c-C----CCc--------------cch----------hHHH-------HH-----
Confidence 00 00000 0 0 0 0 000 000 0000 00
Q ss_pred hhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhh
Q psy8742 692 DWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELG 771 (968)
Q Consensus 692 dwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G 771 (968)
.+ ++..+.....+|.+.+.|...|| -+.++.++| +.|++|++|+|.+++|++.|
T Consensus 326 ----~~--~L~~la~~d~~iv~isadl~~~~-------------------~~~~f~~~~-p~R~id~GIaE~~mvg~AaG 379 (641)
T PRK12571 326 ----GE--ELTKEAAEDSDIVAITAAMPLGT-------------------GLDKLQKRF-PNRVFDVGIAEQHAVTFAAG 379 (641)
T ss_pred ----HH--HHHHHHhhCCCEEEEeCCccCCC-------------------ChHHHHHhC-CCcccccCccHHHHHHHHHH
Confidence 11 11224456778889999986543 236677788 78999999999999999999
Q ss_pred cccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcC-ccCCC-CCcccCCChHHHHhcccCCCCccc
Q psy8742 772 FSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLP-HGLEG-MGPEHSSARLERFLQMSDDEPIRV 849 (968)
Q Consensus 772 ~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP-~G~~g-~GpeHSs~r~er~lql~~~~~~~~ 849 (968)
+|+.|.+|++ ++ |.+|+.-| +||+++..-. ...|++++.. .|+.| .||.|++.--..+| .++
T Consensus 380 lA~~G~~P~v--~~-f~~Fl~ra---~dQI~~~~a~---~~lpv~~v~~~~G~~g~dG~THq~~~dia~l-------r~i 443 (641)
T PRK12571 380 LAAAGLKPFC--AV-YSTFLQRG---YDQLLHDVAL---QNLPVRFVLDRAGLVGADGATHAGAFDLAFL-------TNL 443 (641)
T ss_pred HHHCCCEEEE--Ee-hHHHHHHH---HHHHHHHHhh---cCCCeEEEEECCCcCCCCCccccccHHHHHH-------hcC
Confidence 9999999999 98 99999888 9999875321 3579999884 47644 59999998323888 899
Q ss_pred ccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHh-cCCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccC
Q psy8742 850 ILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIA-LPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPD 928 (968)
Q Consensus 850 p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~-~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d 928 (968)
| ||+|+.|++|.+++++|+.++. .+ .|++|..||..+........-..+.-|. - .++.+
T Consensus 444 P----------------nl~V~~Psd~~e~~~~l~~a~~~~~--~P~~ir~~r~~~~~~~~~~~~~~~~~gk-~-~vlr~ 503 (641)
T PRK12571 444 P----------------NMTVMAPRDEAELRHMLRTAAAHDD--GPIAVRFPRGEGVGVEIPAEGTILGIGK-G-RVPRE 503 (641)
T ss_pred C----------------CCEEEeeCCHHHHHHHHHHHHhCCC--CcEEEEEecCcCCccccCCCCccccCce-e-EEEec
Confidence 9 9999999999999999999998 46 9999999998653111000001121121 1 13322
Q ss_pred CCccccCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 929 DSISERKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 929 ~~~~~~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
.+ +-+|+++|...+..+++.++
T Consensus 504 -------G~--ditIva~G~~v~~aleAa~~ 525 (641)
T PRK12571 504 -------GP--DVAILSVGAHLHECLDAADL 525 (641)
T ss_pred -------CC--CEEEEEecHHHHHHHHHHHH
Confidence 22 34899999999988887764
No 27
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.95 E-value=2.5e-25 Score=267.21 Aligned_cols=359 Identities=15% Similarity=0.183 Sum_probs=244.2
Q ss_pred CCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCc-cc
Q psy8742 414 NPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQI-GF 489 (968)
Q Consensus 414 NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqi-g~ 489 (968)
..+|++...++|+|+|+|+++ ++.+..++|++|||+ ..+|.+||+||+| ++| +|+||.||+. .+
T Consensus 142 ~~G~~g~~ls~a~G~A~a~~~-----~~~~~~v~~viGDG~-~~~G~~~Ealn~a~~~~~~------li~iv~~N~~~s~ 209 (677)
T PLN02582 142 GTGHSSTTISAGLGMAVGRDL-----KGKKNNVVAVIGDGA-MTAGQAYEAMNNAGYLDSD------MIVILNDNKQVSL 209 (677)
T ss_pred ccchhhhhHHHHHHHHHHHHh-----cCCCCEEEEEecccc-cchhhHHHHHHHHHhhCcC------EEEEEECCCCccc
Confidence 348999999999999999998 456678999999999 6899999999999 678 9999999985 33
Q ss_pred ccCCCcccc---------------c-cc--------------------Hh----------------HhhhhcCCcEE-EE
Q psy8742 490 TTDPRFSRS---------------S-SY--------------------CT----------------DVARVVNAPIF-HV 516 (968)
Q Consensus 490 TT~~~~~rs---------------s-~~--------------------~t----------------d~Ak~~giP~~-hV 516 (968)
.|.+-++.+ + .| .. .+-+++|+.++ .|
T Consensus 210 ~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~i 289 (677)
T PLN02582 210 PTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPV 289 (677)
T ss_pred cccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeee
Confidence 221111100 0 00 00 12466899966 99
Q ss_pred eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHH
Q psy8742 517 NSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQV 596 (968)
Q Consensus 517 DGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~ 596 (968)
||+|++++..|.+.|.+. ..++|++|.++|-+-.|-..+.+. |. .|.. .-| .+.
T Consensus 290 DGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~ae~~----~~---~~H~-~~~-------------f~~--- 343 (677)
T PLN02582 290 DGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYAERA----AD---KYHG-VVK-------------FDP--- 343 (677)
T ss_pred CCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChhhcC----hh---hcCC-CCC-------------CCc---
Confidence 999999999999988642 116899999999888776432110 00 1100 000 000
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHH
Q psy8742 597 KDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIE 676 (968)
Q Consensus 597 ~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~ 676 (968)
.|+-... .. ..-|. =...+...|.
T Consensus 344 -----------------------------------------------~~g~~~~------~~-~~~~~--~s~a~~~aL~ 367 (677)
T PLN02582 344 -----------------------------------------------ATGKQFK------VK-AKTQS--YTTYFAEALI 367 (677)
T ss_pred -----------------------------------------------ccCCccC------CC-CCCcC--HHHHHHHHHH
Confidence 0000000 00 00000 0001111222
Q ss_pred HHHHHHHHhhhhhchhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEee
Q psy8742 677 RILKARLQMVESRTVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVC 756 (968)
Q Consensus 677 ~~l~~r~~~~~~~~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~ 756 (968)
.++.++.+|.+.++|...|| + +..+.++| +.|++
T Consensus 368 --------------------------~~a~~d~~vv~ita~m~g~~------------------g-l~~f~~~f-P~R~f 401 (677)
T PLN02582 368 --------------------------AEAEVDKDVVAIHAAMGGGT------------------G-LNLFARRF-PTRCF 401 (677)
T ss_pred --------------------------HHHccCCCEEEEeCCCCCcc------------------c-hHHHHHHc-Ccccc
Confidence 33456777889999875432 2 34788888 89999
Q ss_pred cCCcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cCCC-CCcccCCCh
Q psy8742 757 NSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GLEG-MGPEHSSAR 834 (968)
Q Consensus 757 nspLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~~g-~GpeHSs~r 834 (968)
|++|+|.+++|++.|+|+.|.+|++ ++ |.+|+.-| +||+++..- .+..|++++++| |+.| .||.|++.
T Consensus 402 dvGIAEq~~vg~AaGLA~~G~kPvv--~~-fs~Fl~RA---~DQI~~dva---l~~lpVv~v~~~aG~vg~dG~TH~~~- 471 (677)
T PLN02582 402 DVGIAEQHAVTFAAGLACEGLKPFC--AI-YSSFLQRG---YDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHCGA- 471 (677)
T ss_pred ccCcCHHHHHHHHHHHHHCCCeEEE--Ee-cHHHHHHH---HHHHHHHHH---hcCCCEEEEEECCCcccCCCCccccc-
Confidence 9999999999999999999999999 87 99999877 999987642 235899999997 6655 59999998
Q ss_pred HH-HHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHh-cCCCCcEEEEecccCcCCCCCCCC
Q psy8742 835 LE-RFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIA-LPFRKPLVLMTPKSLLRHPEAKSS 912 (968)
Q Consensus 835 ~e-r~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~-~~~r~Pli~~~pK~Llr~~~a~s~ 912 (968)
.+ .|| .++| ||+|+.|+++.+++++|+.++. .+ .|++|..|+.... +.....
T Consensus 472 ~Dia~l-------r~iP----------------nl~V~~Psd~~E~~~~l~~al~~~~--gPv~IR~pr~~~~-~~~~~~ 525 (677)
T PLN02582 472 FDVTYM-------ACLP----------------NMVVMAPSDEAELFHMVATAAAIDD--RPSCFRYPRGNGI-GVQLPP 525 (677)
T ss_pred HHHHHH-------hcCC----------------CCEEEeeCCHHHHHHHHHHHHhCCC--CCEEEEEecCCCC-CcccCC
Confidence 44 356 7899 9999999999999999999995 44 8999999987521 111000
Q ss_pred ---cccccCCCceEEeccCCCccccCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 913 ---FDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 913 ---l~e~~~g~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
-..+.-|. . .|+.+ .+ +-.|+++|...+..+++.+.
T Consensus 526 ~~~~~~~~iGk-~-~vlr~-------G~--dvtIva~G~~v~~Al~Aa~~ 564 (677)
T PLN02582 526 NNKGIPIEVGK-G-RILLE-------GE--RVALLGYGTAVQSCLAAASL 564 (677)
T ss_pred cccccccccCc-e-EEEEe-------CC--CEEEEeecHHHHHHHHHHHH
Confidence 01111121 2 22222 23 34899999999998887653
No 28
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.95 E-value=1.5e-25 Score=267.07 Aligned_cols=364 Identities=15% Similarity=0.163 Sum_probs=246.3
Q ss_pred cCCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCc-----
Q psy8742 413 ANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQI----- 487 (968)
Q Consensus 413 ~NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqi----- 487 (968)
....|+|..+++|+|+|+|+++ ++.+.-++|+.|||+ ..+|.+||+||.|. .+. ..+|.|+.+|+.
T Consensus 174 ~~tGslg~glS~a~GmA~a~~l-----~g~~~~v~~viGDGe-l~eG~~wEAl~~a~--~~~-~nlivIlddN~~~~~~~ 244 (641)
T PLN02234 174 FGTGHSSTTLSAGLGMAVGRDL-----KGMNNSVVSVIGDGA-MTAGQAYEAMNNAG--YLH-SNMIVILNDNKQVSLPT 244 (641)
T ss_pred ECCCchHHHHHHHHHHHHHHHh-----CCCCCeEEEEEccch-hhhHHHHHHHHHHh--hhC-CCEEEEEECCCCCcccc
Confidence 3458999999999999999998 466677899999999 68999999999993 111 348999999976
Q ss_pred ----ccccCCCcc-------ccc-----ccHhHhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 488 ----GFTTDPRFS-------RSS-----SYCTDVARVVNAPIF-HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 488 ----g~TT~~~~~-------rss-----~~~td~Ak~~giP~~-hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
|.+.+...- +++ ....++-+++|+-++ .|||+|++++..|.+.+.+. +..+|++|.+.|-+
T Consensus 245 ~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~--~~~~P~vI~~~T~K 322 (641)
T PLN02234 245 ANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKST--KTIGPVLIHVVTEK 322 (641)
T ss_pred cccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEec
Confidence 222211100 000 135678899999999 99999999999999876432 23589999999988
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCC
Q psy8742 551 RNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPW 630 (968)
Q Consensus 551 ~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w 630 (968)
-.|-+...... ..|.. .-|.+. +.| +...
T Consensus 323 GkGv~~~E~~~-------~~~H~-~~~~~~------~~g-------------------------~~~~------------ 351 (641)
T PLN02234 323 GRGYPYAERAD-------DKYHG-VLKFDP------ETG-------------------------KQFK------------ 351 (641)
T ss_pred CCCcchhhcCC-------cccCC-CCCCCc------ccc-------------------------cccc------------
Confidence 87765332100 01110 000000 000 0000
Q ss_pred CCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhhhhcCCc
Q psy8742 631 SGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSLLKEGIH 710 (968)
Q Consensus 631 ~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sLl~eg~~ 710 (968)
+. ....+. ..++...|.+ ++.++.+
T Consensus 352 -----~~------~~~~sy------------------~~af~~aL~e--------------------------~a~~D~~ 376 (641)
T PLN02234 352 -----NI------SKTQSY------------------TSCFVEALIA--------------------------EAEADKD 376 (641)
T ss_pred -----CC------CCCCCH------------------HHHHHHHHHH--------------------------HHHHCcC
Confidence 00 000000 0111222223 2345667
Q ss_pred EEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCccccccchhhhh
Q psy8742 711 VRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDF 790 (968)
Q Consensus 711 Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF 790 (968)
|.+.|+|+..|| .+..+.++| +.|++|++|+|.+++|++.|+|+.|.+|++ ++ |++|
T Consensus 377 Iv~l~adm~ggt-------------------~~~~f~~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv--~~-fs~F 433 (641)
T PLN02234 377 IVAIHAAMGGGT-------------------MLNLFESRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFC--TI-YSSF 433 (641)
T ss_pred EEEEECCCCCCc-------------------chHHHHHHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEE--Ee-hHHH
Confidence 779999996543 245666778 899999999999999999999999999999 88 9999
Q ss_pred HhhhhHHHHHHHhhhccccccccCcEEEc-CccCCC-CCcccCCChHH-HHhcccCCCCcccccccchhhhhhhcccCCC
Q psy8742 791 NNTAQCIIDQFISSGQAKWVRQSGLVMLL-PHGLEG-MGPEHSSARLE-RFLQMSDDEPIRVILVLVPIEFAVRQLHDIN 867 (968)
Q Consensus 791 ~~~aQvi~Dq~i~~~~~kw~~~~~lv~~l-P~G~~g-~GpeHSs~r~e-r~lql~~~~~~~~p~~~~~~~~~~~~~~~~n 867 (968)
+.-| +||+++..- ....|++++. ..|+.| .||.|++. .+ .|+ .++| |
T Consensus 434 l~RA---~DQI~~dva---~~~lpV~~v~~~aG~~g~dG~TH~~~-~Dia~l-------r~iP----------------n 483 (641)
T PLN02234 434 MQRA---YDQVVHDVD---LQKLPVRFAIDRAGLMGADGPTHCGA-FDVTFM-------ACLP----------------N 483 (641)
T ss_pred HHHH---HHHHHHHHh---hcCCCEEEEEeCCccCCCCCcccccc-HHHHHH-------hcCC----------------C
Confidence 9877 999987642 2357888887 447654 69999998 44 444 5899 9
Q ss_pred eEEEecCCHhHHHHHHHHHHh-cCCCCcEEEEecccCcCCCCCC--CCcccccCCCceEEeccCCCccccCCCCccEEEE
Q psy8742 868 WIIANCTTPANLFHILRRQIA-LPFRKPLVLMTPKSLLRHPEAK--SSFDDMIEGTEFLRVIPDDSISERKADSVEKLVF 944 (968)
Q Consensus 868 ~~V~~pstpa~~~hlLr~q~~-~~~r~Pli~~~pK~Llr~~~a~--s~l~e~~~g~~F~~vi~d~~~~~~~~~~v~rvil 944 (968)
|+|+.|++|++++++|+.++. ++ +|++|..||..+...... ..-..+.-|. . .|+.+ .+ +-.|+
T Consensus 484 l~V~~Psd~~E~~~~l~~a~~~~~--~Pv~ir~~R~~~~~~~~~~~~~~~~~~iGk-~-~vlre-------G~--dvtIv 550 (641)
T PLN02234 484 MIVMAPSDEAELFNMVATAAAIDD--RPSCFRYHRGNGIGVSLPPGNKGVPLQIGR-G-RILRD-------GE--RVALL 550 (641)
T ss_pred CEEEeeCCHHHHHHHHHHHHhCCC--CCEEEEeecccccccccCCCCccccccCce-E-EEEEe-------CC--CEEEE
Confidence 999999999999999999875 44 899999999876211100 0000111111 1 22222 23 34899
Q ss_pred ecchhHHHHHHHHHh
Q psy8742 945 CSGKVYYDLIKARND 959 (968)
Q Consensus 945 csGkvyydl~~~r~~ 959 (968)
++|...+..+++.++
T Consensus 551 a~G~~v~~Al~AA~~ 565 (641)
T PLN02234 551 GYGSAVQRCLEAASM 565 (641)
T ss_pred EecHHHHHHHHHHHH
Confidence 999999998887764
No 29
>PRK12754 transketolase; Reviewed
Probab=99.93 E-value=2.2e-22 Score=242.25 Aligned_cols=430 Identities=12% Similarity=0.097 Sum_probs=258.9
Q ss_pred cCCCCccccCchhhhHhhHhHhhcC--CCCC---ceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEc
Q psy8742 413 ANPSHLEAVDPVVQGKTRAEQFYRG--DGEG---KKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVN 484 (968)
Q Consensus 413 ~NpShLea~~PvA~G~A~A~q~~~~--~~~~---~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeN 484 (968)
...++||.+.++|+|+|+|.++... +..+ .+..++|++|||. ..||++||++|+| +|| -+|+||.|
T Consensus 111 ~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGe-l~EG~~~EA~~~A~~~kL~-----nLi~ivD~ 184 (663)
T PRK12754 111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGC-MMEGISHEVCSLAGTLKLG-----KLIAFYDD 184 (663)
T ss_pred ccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcch-hhchHHHHHHHHHHHhCCC-----CEEEEEEc
Confidence 3457899999999999999998531 1111 3678999999999 7999999999999 898 36899999
Q ss_pred CCcccccCCCcccccccHhHhhhhcCCcEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCC-CCCCC-
Q psy8742 485 NQIGFTTDPRFSRSSSYCTDVARVVNAPIFH-VNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNE-IDEPM- 561 (968)
Q Consensus 485 Nqig~TT~~~~~rss~~~td~Ak~~giP~~h-VDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne-~Ddp~- 561 (968)
|+|++++++.... ...+.+++++||+++++ |||+|++++++|.+.|.+ ..++|++|++.|+|-+|.+. .+.+.
T Consensus 185 N~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~---~~~~Pt~I~~~T~~g~G~~~~e~~~~~ 260 (663)
T PRK12754 185 NGISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDS 260 (663)
T ss_pred CCCccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCccccCCCccc
Confidence 9999999988776 57899999999999999 899999999988888764 25789999999999999863 23322
Q ss_pred ---CCCHHHHHHHHhCC-----------CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccC
Q psy8742 562 ---FTQPLMYKIIKKTP-----------PALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLD 627 (968)
Q Consensus 562 ---yt~p~~y~~i~~~~-----------dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~ 627 (968)
--.+++++..++.- ++...|++ .++|- +.++++.+.+++-.+ +.| .....+.
T Consensus 261 Hg~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~--~~~~~-------~~~~~w~~~~~~~~~---~~p--~~~~~~~ 326 (663)
T PRK12754 261 HGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDA--KEAGQ-------AKESAWNEKFAAYAK---AYP--QEAAEFT 326 (663)
T ss_pred cCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH--hhhch-------HHHHHHHHHHHHHHH---HCH--HHHHHHH
Confidence 12345555433211 11122211 12221 111122222221100 000 0000000
Q ss_pred CCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhhhhc
Q psy8742 628 SPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSLLKE 707 (968)
Q Consensus 628 ~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sLl~e 707 (968)
..+++ . .++.+.. .+..+...+..-+ +. +.-|. +++++| -.|-..
T Consensus 327 ~~~~~----~-----~p~~~~~-~~~~~~~~~~~~~---~~----------~atR~----------~~~~~L--~~la~~ 371 (663)
T PRK12754 327 RRMKG----E-----MPADFDA-KAKEFIAKLQANP---AK----------IASRK----------ASQNAI--EAFGPL 371 (663)
T ss_pred HHhcC----C-----CchhHHH-HHHHHhhhhcccc---cc----------hHHHH----------HHHHHH--HHHHhh
Confidence 00000 0 0000000 0111100000000 00 11111 111221 123345
Q ss_pred CCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhccc-CCCCccccccch
Q psy8742 708 GIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSM-TNPNTLVCWEAQ 786 (968)
Q Consensus 708 g~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~-~g~~~l~iWE~q 786 (968)
..+|.+..-|....|. ..+.-+..+.++| +.|.+|.-|+|.+++|++.|+++ .|.+|++.-=+.
T Consensus 372 ~~~lv~~sADl~~s~~--------------~~~~~~~~f~~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~tf~~ 436 (663)
T PRK12754 372 LPEFLGGSADLAPSNL--------------TLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGIALHGGFLPYTSTFLM 436 (663)
T ss_pred CCCEEEEeCCcccccC--------------ccccccccccccC-CCCeEeeccchhhHHHHHhhHHhcCCCeEEEEeeHH
Confidence 6677777778754321 1122233444555 56999999999999999999999 678999854445
Q ss_pred hhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cC-CC-CCcccCCChHHHHhcccCCCCcccccccchhhhhhhcc
Q psy8742 787 FGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GL-EG-MGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQL 863 (968)
Q Consensus 787 fgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~-~g-~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~ 863 (968)
|.|++ .||+..++- ...|+++..-| |+ .| -||.|-. +|-.--| ..+|
T Consensus 437 F~~r~------~~qir~~a~----~~l~V~~v~th~gi~~G~DG~THq~--iEdla~l-----R~iP------------- 486 (663)
T PRK12754 437 FVEYA------RNAVRMAAL----MKQRQVMVYTHDSIGLGEDGPTHQP--VEQVASL-----RVTP------------- 486 (663)
T ss_pred HHHHH------HHHHHHHHH----cCCCeEEEEECCccccCCCCCCccc--HHHHHHH-----hcCC-------------
Confidence 54433 777765432 24688777767 44 34 4888855 5633222 5689
Q ss_pred cCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCC-cccccCCCceEEeccCCCccccCCCCccEE
Q psy8742 864 HDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSS-FDDMIEGTEFLRVIPDDSISERKADSVEKL 942 (968)
Q Consensus 864 ~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~-l~e~~~g~~F~~vi~d~~~~~~~~~~v~rv 942 (968)
||.|+.|+++.+...+++.++... ..|+.+-.++.-+........ ..++..|. .|+.+.. .. -+-+
T Consensus 487 ---n~~V~~PaD~~E~~~~~~~a~~~~-~gP~yirl~R~~~p~~~~~~~~~~~~~~G~---~vl~~~~----~~--~dv~ 553 (663)
T PRK12754 487 ---NMSTWRPCDQVESAVAWKYGVERQ-DGPTALILSRQNLAQQERTEEQLANIARGG---YVLKDCA----GQ--PELI 553 (663)
T ss_pred ---CcEEecCCCHHHHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCccchhhhcccCc---EEEEecC----CC--CCEE
Confidence 999999999999999999999762 289988776542211111011 12344443 3454421 11 2358
Q ss_pred EEecchhHHHHHHHHHh
Q psy8742 943 VFCSGKVYYDLIKARND 959 (968)
Q Consensus 943 ilcsGkvyydl~~~r~~ 959 (968)
|++||-.....+++.+.
T Consensus 554 iiatGs~v~~Al~Aa~~ 570 (663)
T PRK12754 554 FIATGSEVELAVAAYEK 570 (663)
T ss_pred EEEECHHHHHHHHHHHH
Confidence 99999998888777654
No 30
>PRK12753 transketolase; Reviewed
Probab=99.93 E-value=1.6e-22 Score=244.29 Aligned_cols=426 Identities=14% Similarity=0.126 Sum_probs=259.6
Q ss_pred cCCCCccccCchhhhHhhHhHhhcC---CC--CCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEc
Q psy8742 413 ANPSHLEAVDPVVQGKTRAEQFYRG---DG--EGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVN 484 (968)
Q Consensus 413 ~NpShLea~~PvA~G~A~A~q~~~~---~~--~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeN 484 (968)
...+|||.+.++|+|+|+|.++... .. .-.+..++|++|||+ ..+|++||++|+| +|| -+|+||.|
T Consensus 111 ~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGe-l~EG~~~EA~~~A~~~kL~-----nLi~ivd~ 184 (663)
T PRK12753 111 TTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGC-LMEGISHEVCSLAGTLGLG-----KLIGFYDH 184 (663)
T ss_pred cCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCc-cccHHHHHHHHHHHHHCCC-----CEEEEEEC
Confidence 3458999999999999999998421 10 012578999999999 7899999999999 887 37889999
Q ss_pred CCcccccCCCcccccccHhHhhhhcCCcEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCC-CCCCC
Q psy8742 485 NQIGFTTDPRFSRSSSYCTDVARVVNAPIFH-VNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEI-DEPMF 562 (968)
Q Consensus 485 Nqig~TT~~~~~rss~~~td~Ak~~giP~~h-VDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~-Ddp~y 562 (968)
|+++++++..... +..+.++.++||++++. |||+|++++++|++.|.+ ..++|++|++.|++-+|++.. +.+.+
T Consensus 185 N~~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~~e~~~~~ 260 (663)
T PRK12753 185 NGISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPNKAGKEES 260 (663)
T ss_pred CCCcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCcccCCCCc
Confidence 9999999988755 46788999999999995 999999999999999875 357899999999999999743 22211
Q ss_pred ----CCHHHHHHHHhC----C-------CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccC
Q psy8742 563 ----TQPLMYKIIKKT----P-------PALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLD 627 (968)
Q Consensus 563 ----t~p~~y~~i~~~----~-------dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~ 627 (968)
-.+++++..++. . ++...|+. .++|- ..++++.+.+++ .++.. |.....+.
T Consensus 261 H~~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~--~~~~~-------~~~~~w~~~~~~----~~~~~-p~~~~~~~ 326 (663)
T PRK12753 261 HGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWDA--REKGE-------KAEQAWNEKFAA----YKKAY-PELAAEFT 326 (663)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh--hhhch-------HHHHHHHHHHHH----HHHHC-HHHHHHHH
Confidence 133444432211 0 00111110 11110 111111111111 10000 00000000
Q ss_pred CCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHH---HHHHHhhhhhchhhhhhhHhhhhhh
Q psy8742 628 SPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERIL---KARLQMVESRTVDWALGEAMAFGSL 704 (968)
Q Consensus 628 ~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l---~~r~~~~~~~~idwa~aE~LA~~sL 704 (968)
..+++ .+| .++. ..+.+.+ ....+.+.. -=++.++| ..|
T Consensus 327 ~~~~~----------------------------~~p---~~~~--~~~~~~~~~~~~~~~~~a~---r~~~g~~L--~~l 368 (663)
T PRK12753 327 RRMSG----------------------------GLP---KDWE--KKTQKYINELQANPAKIAT---RKASQNTL--EAY 368 (663)
T ss_pred HHhcC----------------------------CCC---hhHH--HHHHHHHHHhhccccccHH---HHHHHHHH--HHH
Confidence 00000 011 1110 0000000 000000000 00112222 233
Q ss_pred hhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhccc-CCCCccccc
Q psy8742 705 LKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSM-TNPNTLVCW 783 (968)
Q Consensus 705 l~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~-~g~~~l~iW 783 (968)
....++|.+..-|+..-| ...+.-...+.++| +.|.+|.-|+|.+.+|++.|+|+ .|.+|++
T Consensus 369 ~~~~p~lv~~sADl~~S~--------------~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~~-- 431 (663)
T PRK12753 369 GPLLPELLGGSADLAPSN--------------LTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVPYT-- 431 (663)
T ss_pred HhhCCCeEEEcccccccc--------------CcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeEEE--
Confidence 345677777888875422 00111223344455 45999999999999999999999 8899998
Q ss_pred cchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cC-CC-CCcccCCChHHHHhcccCCCCcccccccchhhhhh
Q psy8742 784 EAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GL-EG-MGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAV 860 (968)
Q Consensus 784 E~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~-~g-~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~ 860 (968)
.-|+-|+.-+ +||+..++-. ..|+++..-| |+ .| -||.|-. +|-.--| ..+|
T Consensus 432 -~tf~~F~~r~---~~qir~~a~~----~l~V~~v~thdg~~~G~DG~THq~--iedla~l-----R~iP---------- 486 (663)
T PRK12753 432 -ATFLMFVEYA---RNAARMAALM----KARQIMVYTHDSIGLGEDGPTHQP--VEQLASL-----RLTP---------- 486 (663)
T ss_pred -EehHHHHHHH---HHHHHHHHhc----CCCeEEEEeCCCcccCCCCccccc--HHHHHHH-----hcCC----------
Confidence 5677776555 8998765322 4688887555 44 24 4888854 5643322 5689
Q ss_pred hcccCCCeEEEecCCHhHHHHHHHHHHh-cCCCCcEEEEecccCcCCCCCC-CCcccccCCCceEEeccCCCccccCCCC
Q psy8742 861 RQLHDINWIIANCTTPANLFHILRRQIA-LPFRKPLVLMTPKSLLRHPEAK-SSFDDMIEGTEFLRVIPDDSISERKADS 938 (968)
Q Consensus 861 ~~~~~~n~~V~~pstpa~~~hlLr~q~~-~~~r~Pli~~~pK~Llr~~~a~-s~l~e~~~g~~F~~vi~d~~~~~~~~~~ 938 (968)
||.|+.|+++.+...+++.++. .+ .|+.+..++.=....... ....++..|. .||.+.+ ..
T Consensus 487 ------n~~v~~PaD~~E~~~~~~~al~~~~--gP~~irl~R~~~~~~~~~~~~~~~~~~G~---~vl~~~~----~~-- 549 (663)
T PRK12753 487 ------NFSTWRPCDQVEAAVAWKLAIERHN--GPTALILSRQNLAQQERTPEQVKNIARGG---YILKDSG----GK-- 549 (663)
T ss_pred ------CCEEEccCCHHHHHHHHHHHHhcCC--CCEEEEecCCCCCCCCCcccchhhccCCc---EEEeccC----CC--
Confidence 9999999999999999999997 45 899988776422111100 0123454443 4454421 11
Q ss_pred ccEEEEecchhHHHHHHHHHh
Q psy8742 939 VEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 939 v~rvilcsGkvyydl~~~r~~ 959 (968)
-+-+|+++|-..+..+++.++
T Consensus 550 ~dv~iia~Gs~v~~al~Aa~~ 570 (663)
T PRK12753 550 PDLILIATGSEVEITLQAAEK 570 (663)
T ss_pred CCEEEEEeCHHHHHHHHHHHH
Confidence 235899999999888777654
No 31
>PTZ00089 transketolase; Provisional
Probab=99.93 E-value=1.6e-22 Score=244.55 Aligned_cols=427 Identities=14% Similarity=0.111 Sum_probs=258.4
Q ss_pred cCCCCccccCchhhhHhhHhHhhcC--C---CCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEc
Q psy8742 413 ANPSHLEAVDPVVQGKTRAEQFYRG--D---GEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVN 484 (968)
Q Consensus 413 ~NpShLea~~PvA~G~A~A~q~~~~--~---~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeN 484 (968)
...+|||.+.++|+|+|+|.++... + ....+..++|++|||+ ..+|++||+||+| +|| -+|+||.|
T Consensus 113 ~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~-l~eG~~~EAl~~A~~~~L~-----nLi~i~d~ 186 (661)
T PTZ00089 113 VTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGC-LQEGVSQEALSLAGHLGLE-----KLIVLYDD 186 (661)
T ss_pred cCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccc-hhhHHHHHHHHHHHHhCCC-----CEEEEEEC
Confidence 3458999999999999999998421 0 0122678999999999 6899999999999 787 37899999
Q ss_pred CCcccccCCCcccccccHhHhhhhcCCcEEEE-eCC-CHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCC-
Q psy8742 485 NQIGFTTDPRFSRSSSYCTDVARVVNAPIFHV-NSD-DPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPM- 561 (968)
Q Consensus 485 Nqig~TT~~~~~rss~~~td~Ak~~giP~~hV-DGn-D~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~- 561 (968)
|+++++++..... ...+.++.++||+.++.| ||+ |+++++.|.+.|.+.. ++|++|++.|+|.+||.+.|...
T Consensus 187 N~~~i~~~~~~~~-~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~~---~~P~~I~~~T~kG~G~~~e~~~~~ 262 (661)
T PTZ00089 187 NKITIDGNTDLSF-TEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSK---GKPKLIIVKTTIGYGSSKAGTEKV 262 (661)
T ss_pred CCcccccCccccc-CccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcC---CCcEEEEEEeeecCCCCcCCCCCc
Confidence 9999999987654 467889999999999999 999 9999999999987542 68999999999999998777653
Q ss_pred ---CCCHHHHHHHHhC--CCH----------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccc
Q psy8742 562 ---FTQPLMYKIIKKT--PPA----------LDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWL 626 (968)
Q Consensus 562 ---yt~p~~y~~i~~~--~dp----------i~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~ 626 (968)
+..+++++..++. .|| ...|.. ..+++ .....++.+.+.+.... .| .....+
T Consensus 263 H~~~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~-~~~~~-------~~~~~~w~~~~~~~~~~---~~--~~~~~l 329 (661)
T PTZ00089 263 HGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQ-HVEKK-------KENYEAWKKRFAKYTAA---FP--KEAQAI 329 (661)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHhhh-------HHHHHHHHHHHHHHHHH---CH--HHHHHH
Confidence 4456677665531 111 111111 01111 11112222222221110 00 000000
Q ss_pred CCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhhhh
Q psy8742 627 DSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSLLK 706 (968)
Q Consensus 627 ~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sLl~ 706 (968)
...+.+ . .+..++. .+..+..+ . +.. ..|. +++++|. .|..
T Consensus 330 ~~~~~~----~-----~~~~~~~-~~~~~~~~----~---~~~----------a~R~----------~~g~~L~--~la~ 370 (661)
T PTZ00089 330 ERRFKG----E-----LPPGWEK-KLPKYTTN----D---KAI----------ATRK----------ASENVLN--PLFQ 370 (661)
T ss_pred HHHhcc----C-----Cchhhhh-hhhhhccc----C---cch----------HHHH----------HHHHHHH--HHHh
Confidence 000000 0 0000000 00000000 0 000 0110 1111111 1112
Q ss_pred cCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhccc-CCCCccccccc
Q psy8742 707 EGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSM-TNPNTLVCWEA 785 (968)
Q Consensus 707 eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~-~g~~~l~iWE~ 785 (968)
....+...--|+..-|+ .+.+ -...+.++|-..|.+|.-|+|...++++.|+|+ .|.+|++ .
T Consensus 371 ~~~~~~~~saDl~~s~~-------~~~~-------~~~~f~~~~P~~rfi~~GIaEq~mv~~AaGlA~~~G~~P~~---~ 433 (661)
T PTZ00089 371 ILPELIGGSADLTPSNL-------TRPK-------EANDFTKASPEGRYIRFGVREHAMCAIMNGIAAHGGFIPFG---A 433 (661)
T ss_pred hCCCeEEEECCCCcccC-------cCCc-------ccccccccCCCCCeeeeeecHHHHHHHHHHHHHcCCCeEEE---E
Confidence 23444444456543221 0000 012344445226899999999999999999999 8889998 6
Q ss_pred hhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc---cCCCCCcccCCChHHHHhcccCCCCcccccccchhhhhhhc
Q psy8742 786 QFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH---GLEGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQ 862 (968)
Q Consensus 786 qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~---G~~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~ 862 (968)
.|.-|+.=| .||+-..+- +..|+++..-| |+..-||.|-. +|-.--| ..+|
T Consensus 434 tf~~Fl~Ra---~dqir~~al----~~lpV~~v~thdg~~~g~DG~THq~--iedia~l-----R~iP------------ 487 (661)
T PTZ00089 434 TFLNFYGYA---LGAVRLAAL----SHHPVIYVATHDSIGLGEDGPTHQP--VETLALL-----RATP------------ 487 (661)
T ss_pred ehHHHHHHH---HHHHHHHHh----cCCCeEEEEeCCceecCCCCCCccc--HHHHHHH-----hcCC------------
Confidence 777787655 999654432 24788888755 33345899976 4533222 5689
Q ss_pred ccCCCeEEEecCCHhHHHHHHHHHHh-cCCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccccCCCCccE
Q psy8742 863 LHDINWIIANCTTPANLFHILRRQIA-LPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEK 941 (968)
Q Consensus 863 ~~~~n~~V~~pstpa~~~hlLr~q~~-~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~v~r 941 (968)
||.|+.|+++.++..+|+.++. .+ .|+.|-.|+.=.. .-..+-.+|..++ -.|+.+.+ .. -+-
T Consensus 488 ----n~~V~~PaD~~E~~~~l~~al~~~~--gP~~irl~R~~~~--~~~~~~~~~~~~g--~~vl~~~~----~~--~dv 551 (661)
T PTZ00089 488 ----NLLVIRPADGTETSGAYALALANAK--TPTILCLSRQNTP--PLPGSSIEGVLKG--AYIVVDFT----NS--PQL 551 (661)
T ss_pred ----CcEEEecCCHHHHHHHHHHHHHcCC--CCEEEEecCCCCC--CcCCCccccccCc--eEEEeccC----CC--CCE
Confidence 9999999999999999999984 44 8999988865221 1100111222121 12444321 01 245
Q ss_pred EEEecchhHHHHHHHHHhc
Q psy8742 942 LVFCSGKVYYDLIKARNDN 960 (968)
Q Consensus 942 vilcsGkvyydl~~~r~~~ 960 (968)
+|+++|-.....+++.++.
T Consensus 552 ~iia~G~~v~~Al~Aa~~L 570 (661)
T PTZ00089 552 ILVASGSEVSLCVEAAKAL 570 (661)
T ss_pred EEEeeCHHHHHHHHHHHHH
Confidence 8999999999888877653
No 32
>PLN02790 transketolase
Probab=99.92 E-value=1.2e-21 Score=236.72 Aligned_cols=430 Identities=14% Similarity=0.148 Sum_probs=254.4
Q ss_pred eecCCCCccccCchhhhHhhHhHhhc----CC-CCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEE
Q psy8742 411 VVANPSHLEAVDPVVQGKTRAEQFYR----GD-GEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIV 482 (968)
Q Consensus 411 i~~NpShLea~~PvA~G~A~A~q~~~----~~-~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVV 482 (968)
+....+|||.+.++|+|+|+|.++.. ++ ..-.+..++|++|||+ ..+|++||+||+| +|| -+|+||
T Consensus 100 i~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~-l~eG~~~EAl~~A~~~~L~-----nli~i~ 173 (654)
T PLN02790 100 IEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGC-QMEGISNEAASLAGHWGLG-----KLIVLY 173 (654)
T ss_pred ccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCc-ccchHHHHHHHHHHHhCCC-----CEEEEE
Confidence 44456899999999999999999631 10 0112578999999999 6899999999999 887 388999
Q ss_pred EcCCcccccCCCcccccccHhHhhhhcCCcEEEEeC--CCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCC-CC
Q psy8742 483 VNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNS--DDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEI-DE 559 (968)
Q Consensus 483 eNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDG--nD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~-Dd 559 (968)
.||+++++++..... ...+.+++++||++++.||| +|++++++|.+.|.+. .++|++|++.|++-+|.... +.
T Consensus 174 d~N~~~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G~~~~e~~ 249 (654)
T PLN02790 174 DDNHISIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYGSPNKANS 249 (654)
T ss_pred ecCCccccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCCCccccCC
Confidence 999999999987644 45678899999999999988 7999999999888642 67899999999999998633 22
Q ss_pred CCC--C--CHHHHHHHHh----CCCHHH-------HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcc
Q psy8742 560 PMF--T--QPLMYKIIKK----TPPALD-------KYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKD 624 (968)
Q Consensus 560 p~y--t--~p~~y~~i~~----~~dpi~-------~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~ 624 (968)
+.+ . .+++++..++ ..+|.. .|.. ..++|- ...+++.+.+.+.... . |....
T Consensus 250 ~~~H~~~~~~~~~~~~~~~l~~~~~~F~~~~~~~~~~~~-~~~~~~-------~~~~~w~~~~~~~~~~----~-~~~~~ 316 (654)
T PLN02790 250 YSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSK-HTKEGA-------ALEAEWNAKFAEYKKK----Y-PEEAA 316 (654)
T ss_pred CCcCCCCCCHHHHHHHHHHhCCCCCCCcCCHHHHHHHHH-HHhhhh-------hhHHHHHHHHHHHHhh----C-HHHHH
Confidence 221 1 2234433221 011111 0111 011110 0111111111111100 0 00000
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhh
Q psy8742 625 WLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSL 704 (968)
Q Consensus 625 ~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sL 704 (968)
.+...++.-. ++.+. ..+..++...+.. .-|. ++.+.| -.|
T Consensus 317 ~~~~~~~~~~---------~~~~~--------~~~~~~~~~~~~~----------a~R~----------~~~~~l--~~i 357 (654)
T PLN02790 317 ELKSLISGEL---------PSGWE--------KALPTFTPEDPAD----------ATRN----------LSQKCL--NAL 357 (654)
T ss_pred HHHHHhccCC---------chhhh--------hhhhhhcccCcch----------HHHH----------HHHHHH--HHH
Confidence 0000000000 00000 0000000000000 0110 001111 111
Q ss_pred hhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccC--CCCcccc
Q psy8742 705 LKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMT--NPNTLVC 782 (968)
Q Consensus 705 l~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~--g~~~l~i 782 (968)
-...+++...--|+...| .....-+..+.+++-+.|.+|.-|+|.+.++++.|+|+. |.+|++.
T Consensus 358 ~~~~p~iv~gsaDl~~s~--------------~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~ 423 (654)
T PLN02790 358 AKVLPGLIGGSADLASSN--------------MTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCA 423 (654)
T ss_pred HhhCCCeEEEECCCCccc--------------ccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEE
Confidence 223345544445664422 001122445556533679999999999999999999995 6999997
Q ss_pred ccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cC-CC-CCcccCCChHHHHhcccCCCCcccccccchhhhh
Q psy8742 783 WEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GL-EG-MGPEHSSARLERFLQMSDDEPIRVILVLVPIEFA 859 (968)
Q Consensus 783 WE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~-~g-~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~ 859 (968)
-=++|.||...+ +-..+- +..|+++..-| |. .| -||.|-. +|-.--| ..+|
T Consensus 424 tf~~F~~~~~~~------ir~~al----~~lpV~~v~thdg~~~G~DG~THq~--iedla~l-----R~iP--------- 477 (654)
T PLN02790 424 TFFVFTDYMRAA------MRLSAL----SEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASL-----RAMP--------- 477 (654)
T ss_pred ecHHHHHHHHHH------HHHHHh----cCCCeEEEEECCceeecCCCCCccc--HHHHHHh-----cCCC---------
Confidence 777888876554 222221 24788988877 43 34 4888866 4533222 5789
Q ss_pred hhcccCCCeEEEecCCHhHHHHHHHHHHh-cCCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccccCCCC
Q psy8742 860 VRQLHDINWIIANCTTPANLFHILRRQIA-LPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADS 938 (968)
Q Consensus 860 ~~~~~~~n~~V~~pstpa~~~hlLr~q~~-~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~ 938 (968)
||.|+.|+++.+...+|+.++. .+ .|+.|-.|+.=...- ...+.+.|..|. .++.+.+ ...+
T Consensus 478 -------nl~V~~PaD~~E~~~~l~~al~~~~--gP~~irl~R~~~~~~-~~~~~~~~~~G~---~vl~~~~----~~~~ 540 (654)
T PLN02790 478 -------NILMLRPADGNETAGAYKVAVTNRK--RPTVLALSRQKVPNL-PGTSIEGVEKGG---YVISDNS----SGNK 540 (654)
T ss_pred -------CcEEEeCCCHHHHHHHHHHHHHcCC--CCEEEEecCCCCCCC-CCCcccccccCc---EEEEeCC----CCCC
Confidence 9999999999999999999986 44 899998886532111 011124454453 3444421 1101
Q ss_pred ccEEEEecchhHHHHHHHHHh
Q psy8742 939 VEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 939 v~rvilcsGkvyydl~~~r~~ 959 (968)
-+-+|+++|......+++.+.
T Consensus 541 ~dv~iia~G~~v~~Al~Aa~~ 561 (654)
T PLN02790 541 PDLILIGTGSELEIAAKAAKE 561 (654)
T ss_pred CCEEEEEcCHHHHHHHHHHHH
Confidence 245899999998888877664
No 33
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.90 E-value=4.1e-24 Score=219.29 Aligned_cols=176 Identities=23% Similarity=0.230 Sum_probs=145.9
Q ss_pred chhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHh
Q psy8742 690 TVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFE 769 (968)
Q Consensus 690 ~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~ 769 (968)
+++|..|-..|+..|+.++.+|++.|+|++.|+| ..+.++...+|+.|++|++|+|.+++|++
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~-----------------~~~~~~~~~~~~~r~i~~gIaE~~~vg~a 64 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTF-----------------GVTFGLAFPFGPGRFINTGIAEQNMVGMA 64 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHT-----------------STTTTHHBHHTTTTEEE--S-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchh-----------------hhhhhccccCCCceEEecCcchhhcccee
Confidence 5788888888899999999999999999997654 46667777778889999999999999999
Q ss_pred hhcccCCC-CccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccCCCCCcccCCChHHHHhcccCCCCcc
Q psy8742 770 LGFSMTNP-NTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGPEHSSARLERFLQMSDDEPIR 848 (968)
Q Consensus 770 ~G~s~~g~-~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~~g~GpeHSs~r~er~lql~~~~~~~ 848 (968)
.|+|+.|. ++++ +.+|++|+..||+.....+......++...+++++.|.|+.+.|+.|++...+.+| .+
T Consensus 65 ~GlA~~G~~~~~~--~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH~s~~d~~~~-------~~ 135 (178)
T PF02779_consen 65 AGLALAGGLRPPV--ESTFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTHHSIEDEAIL-------RS 135 (178)
T ss_dssp HHHHHHSSSEEEE--EEEEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTTSSSSHHHHH-------HT
T ss_pred eeeeeccccccee--EeeccccccccchhhhhhhhhhhhcccceecceeecCccccccccccccccccccc-------cc
Confidence 99999995 5544 99999999988876644444334566666778889999998888888776799999 78
Q ss_pred cccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCC
Q psy8742 849 VILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHP 907 (968)
Q Consensus 849 ~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~ 907 (968)
+| ||+|++|+||+|++++||.+++++.++|++|++||.+|+|+
T Consensus 136 iP----------------g~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r~~~~~~ 178 (178)
T PF02779_consen 136 IP----------------GMKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPRGLYPHQ 178 (178)
T ss_dssp ST----------------TEEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEESSEES-T
T ss_pred cc----------------ccccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeHHhCCCC
Confidence 99 99999999999999999999996556999999999999986
No 34
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.90 E-value=1.2e-23 Score=214.07 Aligned_cols=153 Identities=23% Similarity=0.406 Sum_probs=135.7
Q ss_pred hhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCcccc
Q psy8742 703 SLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVC 782 (968)
Q Consensus 703 sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~i 782 (968)
.++.++.+|++.|+|+..+ +++|..++++.++|+..|++|++|+|..++|++.|+|+.|.+|++
T Consensus 9 ~~~~~~~~vv~l~~D~~~~---------------~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~- 72 (167)
T cd07036 9 EEMERDPRVVVLGEDVGDY---------------GGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIV- 72 (167)
T ss_pred HHHhcCCCEEEECcccccC---------------CCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEE-
Confidence 4567999999999999753 358899999999998889999999999999999999999998877
Q ss_pred ccchhhhhHhhhhHHHHHHHhhh-ccccc----cccCcEEEcCccC-CCCCcccCCChHHHHhcccCCCCcccccccchh
Q psy8742 783 WEAQFGDFNNTAQCIIDQFISSG-QAKWV----RQSGLVMLLPHGL-EGMGPEHSSARLERFLQMSDDEPIRVILVLVPI 856 (968)
Q Consensus 783 WE~qfgDF~~~aQvi~Dq~i~~~-~~kw~----~~~~lv~~lP~G~-~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~ 856 (968)
++||++|+..| +||+.++. ..+|. +..|++++.++|. .+.|++||.. .+++| .++|
T Consensus 73 -~~~~a~Fl~ra---~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ths~~-~~a~l-------r~iP------ 134 (167)
T cd07036 73 -EIMFADFALPA---FDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQS-LEAWF-------AHIP------ 134 (167)
T ss_pred -EeehHHHHHHH---HHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhhhhh-HHHHH-------hcCC------
Confidence 99999999888 99998754 34442 4689999999866 5579999987 89999 8899
Q ss_pred hhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecc
Q psy8742 857 EFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPK 901 (968)
Q Consensus 857 ~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK 901 (968)
||+|++||+|.+++++||++++.+ +|+||+|||
T Consensus 135 ----------g~~V~~Psd~~e~~~~l~~~~~~~--~P~~~~e~k 167 (167)
T cd07036 135 ----------GLKVVAPSTPYDAKGLLKAAIRDD--DPVIFLEHK 167 (167)
T ss_pred ----------CCEEEeeCCHHHHHHHHHHHHhCC--CcEEEEecC
Confidence 999999999999999999999888 999999998
No 35
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=99.89 E-value=1.8e-22 Score=227.84 Aligned_cols=203 Identities=22% Similarity=0.339 Sum_probs=163.6
Q ss_pred hhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCcccc
Q psy8742 703 SLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVC 782 (968)
Q Consensus 703 sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~i 782 (968)
.++.++.+|.+.|+|++. + |++|..+.+|.++||+.|++|++|+|.+++|++.|+|+.|.+|++
T Consensus 47 ~~~~~d~~iv~l~~D~~~--~-------------G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv- 110 (355)
T PTZ00182 47 EELARDPKVFVLGEDVAQ--Y-------------GGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIA- 110 (355)
T ss_pred HHHhhCCCEEEEeCCccc--c-------------CCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEE-
Confidence 456788899999999963 1 357889999999999999999999999999999999999999999
Q ss_pred ccchhhhhHhhhhHHHHHHHhhh-ccccc----cccCcEEEcCccCC-CCCcccCCChHHHHhcccCCCCcccccccchh
Q psy8742 783 WEAQFGDFNNTAQCIIDQFISSG-QAKWV----RQSGLVMLLPHGLE-GMGPEHSSARLERFLQMSDDEPIRVILVLVPI 856 (968)
Q Consensus 783 WE~qfgDF~~~aQvi~Dq~i~~~-~~kw~----~~~~lv~~lP~G~~-g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~ 856 (968)
++||+||+.-| +||+++.. ..+|. ...|+|++.|+|.. +.||.||++ +|.+| .++|
T Consensus 111 -~~~fa~Fl~ra---~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~-~ea~l-------r~iP------ 172 (355)
T PTZ00182 111 -EFMFADFIFPA---FDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQS-FEAYF-------AHVP------ 172 (355)
T ss_pred -EechhhHHHHH---HHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccch-HHHHH-------hcCC------
Confidence 99999999888 99998864 33443 57899999998774 569999998 89999 8999
Q ss_pred hhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccccCC
Q psy8742 857 EFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKA 936 (968)
Q Consensus 857 ~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~ 936 (968)
||+|++|++|.|++++|+.++..+ +|++|++||.|+|.+....+-++ +.-.++... +-.
T Consensus 173 ----------n~~V~~Psd~~e~~~~l~~a~~~~--~P~~i~~p~~l~r~~~~~~~~~~------~~~~~Gk~~---vl~ 231 (355)
T PTZ00182 173 ----------GLKVVAPSDPEDAKGLLKAAIRDP--NPVVFFEPKLLYRESVEVVPEAD------YTLPLGKAK---VVR 231 (355)
T ss_pred ----------CCEEEeeCCHHHHHHHHHHHHhCC--CcEEEEeehHHhCCCCCCCCccc------ccccCCcce---Eec
Confidence 999999999999999999999876 99999999999986543211111 110111111 011
Q ss_pred CCccEEEEecchhHHHHHHHHHhc
Q psy8742 937 DSVEKLVFCSGKVYYDLIKARNDN 960 (968)
Q Consensus 937 ~~v~rvilcsGkvyydl~~~r~~~ 960 (968)
+.-+.+|+|+|..+...+++.++.
T Consensus 232 ~G~di~Iia~Gs~~~~aleAa~~L 255 (355)
T PTZ00182 232 EGKDVTIVGYGSQVHVALKAAEEL 255 (355)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHH
Confidence 223568999999999999888653
No 36
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.88 E-value=4.7e-21 Score=229.22 Aligned_cols=446 Identities=14% Similarity=0.123 Sum_probs=275.6
Q ss_pred HHHhcCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcccc-CcchhhHHHHHHHHHHhhhcCCCcEEeccC
Q psy8742 277 RQKLETPG-IMNMSEDQKRLILARLTRATGFEAFLARKW--SSEKRFGL-EGAEILIPAMKQVIDKSTELGVESVVMGMP 352 (968)
Q Consensus 277 ~~~~E~~~-~~~ls~e~~~~il~~M~~aR~fE~~l~~~~--~~~Krfg~-eG~Ea~i~~l~~li~~a~~~g~~divigm~ 352 (968)
-++|+.+. -..|+.+++..+-..+ =+++...- ..|.-+|. .|-==+.++|.. ....-.|.+++=..
T Consensus 79 L~~i~~P~dlk~L~~~eL~~La~Ei------R~~li~~v~s~~GGHl~snLGvVELTvALH~----VFd~p~DkiiwDvg 148 (701)
T PLN02225 79 LDSIETPLQLKNLSVKELKLLADEI------RTELHSVLWKKTQKSMNPSFAAIELTLALHY----VFRAPVDNILWDAV 148 (701)
T ss_pred hhhcCCHHHHhhCCHHHHHHHHHHH------HHHHHHHhhcccCCCcCCCccHHHHHHHHHH----HhCCCCCceeeccc
Confidence 45555542 3467888877664332 23333333 23433432 332112233332 33444466776667
Q ss_pred CccHHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHh
Q psy8742 353 HRGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAE 432 (968)
Q Consensus 353 HRgr~~~La~g~gkp~~~ifae~g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~ 432 (968)
|-.-.|=|-.|-...+. . +++++-++..+- .-+.+.. ...+|-.+.+..|+|+|.|+
T Consensus 149 HQ~Y~HKiLTGR~~~f~-~-Rq~~GlsGf~~r--------~ES~~D~-------------f~~GHssTSiSaalG~a~ar 205 (701)
T PLN02225 149 EQTYAHKVLTRRWSAIP-S-RQKNGISGVTSQ--------LESEYDS-------------FGTGHGCNSISAGLGLAVAR 205 (701)
T ss_pred cccchhhHhcCChhhcC-c-cccCCcCCCCCC--------CCCCCCC-------------CCCChHHHHHHHHHHHHHHH
Confidence 88777766665411111 1 333222221110 0011111 11256677789999999999
Q ss_pred HhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCc------ccccccHh
Q psy8742 433 QFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRF------SRSSSYCT 503 (968)
Q Consensus 433 q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~------~rss~~~t 503 (968)
.+ .+++.-+|+++||||+ .-|..+|+||-+ +-+ +|.|+.+|+.+|+-+.+. +--+.|++
T Consensus 206 dl-----~g~~~~vvaVIGDGal-tgGma~EaLN~~g~~~~~------livILNDN~mSi~~n~~~~~~~~vG~ls~~l~ 273 (701)
T PLN02225 206 DI-----KGKRDRVVAVIDNATI-TAGQAYEAMSNAGYLDSN------MIVILNDSRHSLHPNMEEGSKASISALSSIMS 273 (701)
T ss_pred Hh-----cCCCCcEEEEEcCcch-hhhhHHHHHhhhhccCCC------EEEEEeCCCCCCCCCCCCccCCccchHHHHHH
Confidence 88 4556678999999995 589999999998 334 999999999999876100 00000000
Q ss_pred ----------------------------------------------HhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHhh
Q psy8742 504 ----------------------------------------------DVARVVNAPIF-HVNSDDPEAVIHVCNLAAEWRN 536 (968)
Q Consensus 504 ----------------------------------------------d~Ak~~giP~~-hVDGnD~eAV~~a~~~Ave~rr 536 (968)
.+-+.+|+-++ -|||+|++++..+.+.+.++
T Consensus 274 ~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~-- 351 (701)
T PLN02225 274 KIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSL-- 351 (701)
T ss_pred HHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcC--
Confidence 12234466555 67999999999998888642
Q ss_pred cCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8742 537 TFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARK 616 (968)
Q Consensus 537 ~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~ 616 (968)
...+||||+++|-. |+
T Consensus 352 ~~~~PvlvHv~T~K--Gk-------------------------------------------------------------- 367 (701)
T PLN02225 352 DSMGPVLVHVITEE--NR-------------------------------------------------------------- 367 (701)
T ss_pred CCCCCEEEEEEecC--CC--------------------------------------------------------------
Confidence 22489999999832 21
Q ss_pred ccCCCCccccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhh
Q psy8742 617 ETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALG 696 (968)
Q Consensus 617 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~a 696 (968)
++++ .. .. .. ....+. ...+...|.++
T Consensus 368 ----d~~t---g~---~~-~~------~~~~s~------------------~~~f~~aL~~l------------------ 394 (701)
T PLN02225 368 ----DAET---GK---NI-MV------KDRRTY------------------SDCFVEALVME------------------ 394 (701)
T ss_pred ----CCCC---CC---cC-CC------CCCcCH------------------HHHHHHHHHHH------------------
Confidence 0000 00 00 00 000000 01112222332
Q ss_pred hHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCC
Q psy8742 697 EAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTN 776 (968)
Q Consensus 697 E~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g 776 (968)
+.++.+|.+.+.|...|| -|..+.++| |.|++|++|+|..++||+.|+|+.|
T Consensus 395 --------a~~D~~Iv~Itadm~~gt-------------------gl~~f~~~f-PdRffDvGIAEQhaVt~AAGLA~~G 446 (701)
T PLN02225 395 --------AEKDRDIVVVHAGMEMDA-------------------SLITFQERF-PDRFFNVGMAEQHAVTFSAGLSSGG 446 (701)
T ss_pred --------HhhCCCEEEEeCCccCcc-------------------cHHHHHHHc-cccccccCccHHHHHHHHHHHHHCC
Confidence 345666779999986554 257788889 8999999999999999999999999
Q ss_pred CCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccCCC-CCcccCCChHH-HHhcccCCCCcccccccc
Q psy8742 777 PNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEG-MGPEHSSARLE-RFLQMSDDEPIRVILVLV 854 (968)
Q Consensus 777 ~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~~g-~GpeHSs~r~e-r~lql~~~~~~~~p~~~~ 854 (968)
.+|++ +++ .+|+.-| +||+++.. .+......+++.- .|+.| .||.|++. .+ .|| .++|
T Consensus 447 ~kPvv--~iy-stFlqRA---yDQI~~Dv-al~~lpV~~vid~-aGlvg~DG~TH~g~-~Dia~l-------r~IP---- 506 (701)
T PLN02225 447 LKPFC--IIP-SAFLQRA---YDQVVHDV-DRQRKAVRFVITS-AGLVGSDGPVQCGA-FDIAFM-------SSLP---- 506 (701)
T ss_pred CEEEE--Eee-hhHHHHH---HHHHHHHH-HhhcCCceEEEEC-CccCCCCCcccccc-HHHHHH-------hcCC----
Confidence 99999 766 7999888 99999864 2222233444443 36655 58999998 44 899 8999
Q ss_pred hhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHh-cCCCCcEEEEecccCcCC-CCCCCCcccccCCCceEEeccCCCcc
Q psy8742 855 PIEFAVRQLHDINWIIANCTTPANLFHILRRQIA-LPFRKPLVLMTPKSLLRH-PEAKSSFDDMIEGTEFLRVIPDDSIS 932 (968)
Q Consensus 855 ~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~-~~~r~Pli~~~pK~Llr~-~~a~s~l~e~~~g~~F~~vi~d~~~~ 932 (968)
||+|+.|++|.++.++|+.++. .+ .|++|..||..+.. +.....-..+.-|. . .|+.+
T Consensus 507 ------------nm~V~aPsD~~El~~mL~~A~~~~~--gPv~IR~pRg~~~~~~~~~~~~~~~~iGK-~-~vlre---- 566 (701)
T PLN02225 507 ------------NMIAMAPADEDELVNMVATAAYVTD--RPVCFRFPRGSIVNMNYLVPTGLPIEIGR-G-RVLVE---- 566 (701)
T ss_pred ------------CCEEEeeCCHHHHHHHHHHHHhcCC--CCEEEEecccccCCCCcCCCCCccccCcc-e-EEEEe----
Confidence 9999999999999999999884 44 89999999986532 11111101221121 1 23322
Q ss_pred ccCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 933 ERKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 933 ~~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
.++ -.|+++|...+..+++.++
T Consensus 567 ---G~d--vtIia~G~mv~~Al~AA~~ 588 (701)
T PLN02225 567 ---GQD--VALLGYGAMVQNCLHAHSL 588 (701)
T ss_pred ---CCC--EEEEeccHHHHHHHHHHHH
Confidence 233 4899999999999888764
No 37
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=99.87 E-value=5.5e-22 Score=221.77 Aligned_cols=200 Identities=20% Similarity=0.258 Sum_probs=162.0
Q ss_pred hhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCcccc
Q psy8742 703 SLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVC 782 (968)
Q Consensus 703 sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~i 782 (968)
.++.++.+|.+.|+|++.++ ++|..|++|.++|+..|++|++|+|..++|++.|+|+.|.+|++
T Consensus 16 ~~~~~dp~iv~l~~d~~~~~---------------g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv- 79 (327)
T CHL00144 16 EEMARDPRVFVIGEDVGHYG---------------GSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIV- 79 (327)
T ss_pred HHHhhCCCEEEEeCcccccC---------------CchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEE-
Confidence 45678899999999998753 47889999999997779999999999999999999999999999
Q ss_pred ccchhhhhHhhhhHHHHHHHhhh-ccccc----cccCcEEEcCccC-CCCCcccCCChHHHHhcccCCCCcccccccchh
Q psy8742 783 WEAQFGDFNNTAQCIIDQFISSG-QAKWV----RQSGLVMLLPHGL-EGMGPEHSSARLERFLQMSDDEPIRVILVLVPI 856 (968)
Q Consensus 783 WE~qfgDF~~~aQvi~Dq~i~~~-~~kw~----~~~~lv~~lP~G~-~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~ 856 (968)
+.++.+|..-| +||+++.. ...|. ...|+|++.|.|. .+.|+.||++ +|.+| .++|
T Consensus 80 -~~~~~~f~~ra---~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~-~ea~~-------~~iP------ 141 (327)
T CHL00144 80 -EGMNMGFLLLA---FNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQR-LESYF-------QSVP------ 141 (327)
T ss_pred -EeehhhHHHHH---HHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCcccccc-HHHHH-------hcCC------
Confidence 99999999888 99998863 33332 3678999988644 5689999999 89999 8999
Q ss_pred hhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCc-ccccCCCceEEeccCCCccccC
Q psy8742 857 EFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSF-DDMIEGTEFLRVIPDDSISERK 935 (968)
Q Consensus 857 ~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l-~e~~~g~~F~~vi~d~~~~~~~ 935 (968)
||+|++||+|.|++++|+++++.+ .|++|++||.||+.+..+..- ..+..|. . .|+. +
T Consensus 142 ----------gl~V~~Psd~~d~~~~l~~a~~~~--~Pv~ire~~~l~~~~~~v~~~~~~~~~Gk-~-~v~~-------~ 200 (327)
T CHL00144 142 ----------GLQIVACSTPYNAKGLLKSAIRSN--NPVIFFEHVLLYNLKEEIPDNEYLLPLEK-A-EVVR-------P 200 (327)
T ss_pred ----------CCEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEcHHhcCCCCCCCCCCccccCCe-e-EEEE-------c
Confidence 999999999999999999999877 999999999999865432211 1111121 1 2222 2
Q ss_pred CCCccEEEEecchhHHHHHHHHHh
Q psy8742 936 ADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 936 ~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
.++ -.|+++|-..+..+++.+.
T Consensus 201 G~d--itiia~G~~v~~al~Aa~~ 222 (327)
T CHL00144 201 GND--ITILTYSRMRHHVLQAVKV 222 (327)
T ss_pred CCC--EEEEEccHHHHHHHHHHHH
Confidence 333 4799999999988887664
No 38
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.87 E-value=1.2e-21 Score=227.54 Aligned_cols=200 Identities=18% Similarity=0.277 Sum_probs=163.8
Q ss_pred hhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCcccc
Q psy8742 703 SLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVC 782 (968)
Q Consensus 703 sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~i 782 (968)
.++.++.+|.++|+|+... ++.|+.+++|.++||+.|++|+||+|.+++|++.|+|+.|.+|++
T Consensus 154 ~~~~~d~~vv~i~~Dv~~~---------------~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv- 217 (464)
T PRK11892 154 EEMRRDEDVFVMGEEVAEY---------------QGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIV- 217 (464)
T ss_pred HHHhhCcCEEEEeCCcccc---------------CCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEE-
Confidence 4566888999999999763 358999999999999999999999999999999999999999999
Q ss_pred ccchhhhhHhhhhHHHHHHHhhh-ccccc----cccCcEEEcCccC-CCCCcccCCChHHHHhcccCCCCcccccccchh
Q psy8742 783 WEAQFGDFNNTAQCIIDQFISSG-QAKWV----RQSGLVMLLPHGL-EGMGPEHSSARLERFLQMSDDEPIRVILVLVPI 856 (968)
Q Consensus 783 WE~qfgDF~~~aQvi~Dq~i~~~-~~kw~----~~~~lv~~lP~G~-~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~ 856 (968)
|+|+.+|+.-| +||++++. ...|+ ...|+|++.|+|. .+.|++||++ ...|+ .++|
T Consensus 218 -~~~~~~f~~ra---~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~hhs~~-d~a~~-------~~iP------ 279 (464)
T PRK11892 218 -EFMTFNFAMQA---IDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAAQHSQD-YAAWY-------SHIP------ 279 (464)
T ss_pred -EEehHHHHHHH---HHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCCccccC-HHHHH-------hhCC------
Confidence 99999999888 99999864 33332 3589999999976 6789999998 88999 8999
Q ss_pred hhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCccccc--CCCceEEeccCCCcccc
Q psy8742 857 EFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMI--EGTEFLRVIPDDSISER 934 (968)
Q Consensus 857 ~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~--~g~~F~~vi~d~~~~~~ 934 (968)
||+|++|+||+|++++|+.+++.+ +|++|+++|.+|.....+..++++. -|. .+ |+.
T Consensus 280 ----------gl~V~~P~d~~d~~~ll~~ai~~~--~Pv~ile~~~ry~~~~~vp~~~~~~~~~Gk-a~-v~r------- 338 (464)
T PRK11892 280 ----------GLKVVAPYSAADAKGLLKAAIRDP--NPVIFLENEILYGQSFDVPKLDDFVLPIGK-AR-IHR------- 338 (464)
T ss_pred ----------CCEEEEeCCHHHHHHHHHHHhhCC--CcEEEEechhhcCCCCCCCCcCCccccCce-EE-EEE-------
Confidence 999999999999999999999877 9999999999998653333333331 121 21 222
Q ss_pred CCCCccEEEEecchhHHHHHHHHHh
Q psy8742 935 KADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 935 ~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
+.+ +-.|+++|...+..+++.++
T Consensus 339 ~G~--DvtIva~G~~v~~Al~Aa~~ 361 (464)
T PRK11892 339 EGK--DVTIVSFSIGMTYALKAAEE 361 (464)
T ss_pred cCC--CEEEEEccHHHHHHHHHHHH
Confidence 223 34799999988888777654
No 39
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=99.87 E-value=1.7e-21 Score=217.91 Aligned_cols=202 Identities=17% Similarity=0.270 Sum_probs=163.9
Q ss_pred hhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCcc
Q psy8742 701 FGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTL 780 (968)
Q Consensus 701 ~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l 780 (968)
.-.++.++.+|.+.|+|++.++ +.|+.|+++.++||+.|++|++|+|.+++|++.|+|+.|.+|+
T Consensus 14 L~~~~~~d~~iv~l~~d~~~~~---------------g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Pi 78 (327)
T PRK09212 14 MQEEMERDPKVFLMGEEVGEYQ---------------GAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPI 78 (327)
T ss_pred HHHHHHhCCCEEEEcCcccccC---------------CcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeE
Confidence 3456778999999999997643 5899999999999999999999999999999999999999999
Q ss_pred ccccchhhhhHhhhhHHHHHHHhhh-ccccc----cccCcEEEcCccC-CCCCcccCCChHHHHhcccCCCCcccccccc
Q psy8742 781 VCWEAQFGDFNNTAQCIIDQFISSG-QAKWV----RQSGLVMLLPHGL-EGMGPEHSSARLERFLQMSDDEPIRVILVLV 854 (968)
Q Consensus 781 ~iWE~qfgDF~~~aQvi~Dq~i~~~-~~kw~----~~~~lv~~lP~G~-~g~GpeHSs~r~er~lql~~~~~~~~p~~~~ 854 (968)
+ ++|+.+|..-| +||+++.. ..+|. ...|+|++.|.|. .+.|++||++ +|.+| .++|
T Consensus 79 v--~~~~~~f~~ra---~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~-~ea~~-------r~iP---- 141 (327)
T PRK09212 79 V--EFMTFNFSMQA---IDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQC-YAAWY-------SHIP---- 141 (327)
T ss_pred E--EeehhhHHHHH---HHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccC-HHHHH-------hcCC----
Confidence 9 99999999888 99998753 33343 3689999999876 6779999999 89999 8999
Q ss_pred hhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCC-cccccCCCceEEeccCCCccc
Q psy8742 855 PIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSS-FDDMIEGTEFLRVIPDDSISE 933 (968)
Q Consensus 855 ~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~-l~e~~~g~~F~~vi~d~~~~~ 933 (968)
||+|++|++|.+++++|+.+++.+ +|++|++|+.+|.....+.. ...|.-|. . .|+.
T Consensus 142 ------------~l~V~~P~d~~e~~~~l~~a~~~~--~Pv~i~~~~~~~~~~~~~~~~~~~~~~Gk-~-~vl~------ 199 (327)
T PRK09212 142 ------------GLKVVAPYFAADCKGLLKTAIRDP--NPVIFLENEILYGHSHEVPEEEESIPIGK-A-AILR------ 199 (327)
T ss_pred ------------CCEEEeeCCHHHHHHHHHHHHhCC--CcEEEEEchhhcCCCCCCCCCCccccCCe-e-EEEE------
Confidence 999999999999999999999876 99999999998874322211 11122221 1 1222
Q ss_pred cCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 934 RKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 934 ~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
+.+ +-+|+|+|..++..+++.+.
T Consensus 200 -~G~--di~iva~G~~~~~a~eAa~~ 222 (327)
T PRK09212 200 -EGS--DVTIVTFSIQVKLALEAAEL 222 (327)
T ss_pred -eCC--CEEEEEccHHHHHHHHHHHH
Confidence 122 35899999999999887764
No 40
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=99.83 E-value=6e-20 Score=207.47 Aligned_cols=202 Identities=19% Similarity=0.263 Sum_probs=162.7
Q ss_pred hhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCcc
Q psy8742 701 FGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTL 780 (968)
Q Consensus 701 ~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l 780 (968)
.-.++.++.+|.+.|+|++.. ++.|..+++|.++|++.|++|++|+|..++|++.|+|+.|.+|+
T Consensus 37 L~e~~~~d~~iv~i~~D~~~~---------------~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~ 101 (356)
T PLN02683 37 LDEEMSADPKVFIMGEEVGEY---------------QGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPV 101 (356)
T ss_pred HHHHHhhCcCEEEEccccccc---------------cCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEE
Confidence 345667888999999999652 35888999999999999999999999999999999999999999
Q ss_pred ccccchhhhhHhhhhHHHHHHHhh-hccccc--c--ccCcEEEcCccC-CCCCcccCCChHHHHhcccCCCCcccccccc
Q psy8742 781 VCWEAQFGDFNNTAQCIIDQFISS-GQAKWV--R--QSGLVMLLPHGL-EGMGPEHSSARLERFLQMSDDEPIRVILVLV 854 (968)
Q Consensus 781 ~iWE~qfgDF~~~aQvi~Dq~i~~-~~~kw~--~--~~~lv~~lP~G~-~g~GpeHSs~r~er~lql~~~~~~~~p~~~~ 854 (968)
+ ++||.+|..-| +||+++. +..+|. . ..|++++.|+|. .|.|+.||+. .+.+| .++|
T Consensus 102 v--~~~~~~f~~ra---~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~-~~a~l-------r~iP---- 164 (356)
T PLN02683 102 V--EFMTFNFSMQA---IDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQC-FAAWY-------SSVP---- 164 (356)
T ss_pred E--EEehhhHHHHH---HHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccC-HHHHH-------hcCC----
Confidence 9 99999999998 9999886 344443 2 479999999987 6789999888 78999 8999
Q ss_pred hhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCc-----ccccCCCceEEeccCC
Q psy8742 855 PIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSF-----DDMIEGTEFLRVIPDD 929 (968)
Q Consensus 855 ~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l-----~e~~~g~~F~~vi~d~ 929 (968)
||+|+.|++|.++.++|+.++..+ +|++|.+||.+++.+..+..- ..+.-|. . .++.
T Consensus 165 ------------nl~V~~Pad~~e~~~~l~~a~~~~--gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk-~-~v~r-- 226 (356)
T PLN02683 165 ------------GLKVLAPYSSEDARGLLKAAIRDP--DPVVFLENELLYGESFPVSAEVLDSSFVLPIGK-A-KIER-- 226 (356)
T ss_pred ------------CCEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEehhhccCCCCCCCCCCCccccccCCe-e-EEEE--
Confidence 999999999999999999999777 999999999999854332110 1111121 1 1222
Q ss_pred CccccCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 930 SISERKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 930 ~~~~~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
+.++ -+|+|+|......+++.++
T Consensus 227 -----~G~d--vtIia~G~~v~~Al~Aa~~ 249 (356)
T PLN02683 227 -----EGKD--VTIVAFSKMVGYALKAAEI 249 (356)
T ss_pred -----cCCC--EEEEEccHHHHHHHHHHHH
Confidence 2333 4899999999988877653
No 41
>PRK05261 putative phosphoketolase; Provisional
Probab=99.72 E-value=4.8e-15 Score=179.63 Aligned_cols=201 Identities=15% Similarity=0.160 Sum_probs=139.8
Q ss_pred cCcchhhHHHHHHHHHHhhhc----CCC-cEEeccCCccHHHHHHHhc-C-----CC--------HHHHHHHhcCCCCCC
Q psy8742 322 LEGAEILIPAMKQVIDKSTEL----GVE-SVVMGMPHRGRLNVLANVC-R-----KP--------LEQIFTQFAALEAAD 382 (968)
Q Consensus 322 ~eG~Ea~i~~l~~li~~a~~~----g~~-divigm~HRgr~~~La~g~-g-----kp--------~~~ifae~g~~~~~~ 382 (968)
+.|+=+..||+.-+....-.+ +.+ -+|+|+-|=+-+.+-..-+ | +| +..+|.+|+-
T Consensus 48 ~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~----- 122 (785)
T PRK05261 48 LLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSF----- 122 (785)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccC-----
Confidence 366666677765543322222 222 2577776755543332322 4 22 4447777732
Q ss_pred CCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchH-
Q psy8742 383 DGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVV- 461 (968)
Q Consensus 383 ~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv- 461 (968)
.|+++.|..... + ++....+.||.+.++|+|+|++. .+.+++|++|||+ +.+|.+
T Consensus 123 --pgg~~sH~~~~t------P------Gi~~~~G~LG~gls~A~G~Al~~---------~d~iv~~~vGDGE-~EeG~lA 178 (785)
T PRK05261 123 --PGGIPSHAAPET------P------GSIHEGGELGYSLSHAYGAAFDN---------PDLIVACVVGDGE-AETGPLA 178 (785)
T ss_pred --CCCcCCCCCCCC------C------CeeeCCCchhhHHHHHHHHHHcC---------CCCEEEEEECcCc-hhhhhhH
Confidence 123456875321 2 23444578999999999999643 3469999999999 799985
Q ss_pred --HHHHHhCCCCCCCcccEEEEEEcCCcccccCCCccccc-ccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhc-
Q psy8742 462 --FETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSS-SYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNT- 537 (968)
Q Consensus 462 --~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss-~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~- 537 (968)
+++.+++. .++.|-++-|+.+|+|.+++++..++.+ ..+.++.++||++++.|||+|+++|+.+++.|++++-+
T Consensus 179 a~W~~~~~~~--~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~ 256 (785)
T PRK05261 179 TSWHSNKFLN--PATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEE 256 (785)
T ss_pred HHhhhhhhcc--cccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 77777652 3456678888889999999999877543 67899999999999999999999999998888775544
Q ss_pred ----------C---CCcE--EEEEEeecCCC
Q psy8742 538 ----------F---HKDV--VIDIVSYRRNG 553 (968)
Q Consensus 538 ----------~---~gPv--lIel~tYR~~G 553 (968)
+ .+|. +|.+.|---+|
T Consensus 257 i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g 287 (785)
T PRK05261 257 IRAIQKEAREGGDTTRPRWPMIVLRTPKGWT 287 (785)
T ss_pred HHHHHHHHHhCCCCCCCCceEEEEECCccCC
Confidence 4 5899 99999977555
No 42
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=99.72 E-value=2.4e-17 Score=166.01 Aligned_cols=145 Identities=16% Similarity=0.203 Sum_probs=124.8
Q ss_pred hhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCcccc
Q psy8742 703 SLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVC 782 (968)
Q Consensus 703 sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~i 782 (968)
.++.++.++.+.|+|+..+ ..|+++.++| +.|++|++|+|.+++|.+.|+|+.|.+|++
T Consensus 9 ~~~~~~~~~v~~~~Dl~~~-------------------~~~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~- 67 (156)
T cd07033 9 ELAKKDPRIVALSADLGGS-------------------TGLDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFV- 67 (156)
T ss_pred HHHhhCCCEEEEECCCCCC-------------------CCcHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHCCCeEEE-
Confidence 4567889999999999753 2467788888 789999999999999999999999988888
Q ss_pred ccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCcc-CC--CCCcccCCChHHHHhcccCCCCcccccccchhhhh
Q psy8742 783 WEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHG-LE--GMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFA 859 (968)
Q Consensus 783 WE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G-~~--g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~ 859 (968)
+.+ .+|..-| +||+.+.+ .++ ..|++++.+|| +. +.|+.|++--.+.+| .++|
T Consensus 68 -~~~-~~f~~ra---~dqi~~~~-a~~--~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~-------~~iP--------- 123 (156)
T cd07033 68 -STF-SFFLQRA---YDQIRHDV-ALQ--NLPVKFVGTHAGISVGEDGPTHQGIEDIALL-------RAIP--------- 123 (156)
T ss_pred -EEC-HHHHHHH---HHHHHHHH-hcc--CCCeEEEEECCcEecCCCCcccchHHHHHHh-------cCCC---------
Confidence 999 9999988 99999654 233 38999999985 43 478999775578888 7899
Q ss_pred hhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecc
Q psy8742 860 VRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPK 901 (968)
Q Consensus 860 ~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK 901 (968)
|++|+.|++|.+++.+|+.+++.+ +|++|..|+
T Consensus 124 -------g~~v~~Ps~~~~~~~ll~~a~~~~--~P~~irl~~ 156 (156)
T cd07033 124 -------NMTVLRPADANETAAALEAALEYD--GPVYIRLPR 156 (156)
T ss_pred -------CCEEEecCCHHHHHHHHHHHHhCC--CCEEEEeeC
Confidence 999999999999999999999988 899998764
No 43
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.70 E-value=1.8e-16 Score=160.90 Aligned_cols=158 Identities=26% Similarity=0.321 Sum_probs=123.6
Q ss_pred hHhhhhhhhhc-CCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccC
Q psy8742 697 EAMAFGSLLKE-GIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMT 775 (968)
Q Consensus 697 E~LA~~sLl~e-g~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~ 775 (968)
-..++..++.+ ..+|+++|+|++.+++.+++.+ |...+++ ++.|++|++|+|.+++|++.|+|+.
T Consensus 6 ~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~~~~----------~~~~~~~----~~~R~~~~gIaE~~~vg~a~GlA~~ 71 (168)
T smart00861 6 FGEALAELAERDPERVVVSGADVGGSTGLDRGGV----------FPDTKGL----GPGRVIDTGIAEQAMVGFAAGLALA 71 (168)
T ss_pred HHHHHHHHHhhCCCcEEEEehhhCcCcCCCcCCc----------cCCCCCC----CCccEEEcCcCHHHHHHHHHHHHHc
Confidence 33445567777 4489999999998887665433 4444444 6789999999999999999999999
Q ss_pred CCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccC-CCC-CcccCCChHHHHhcccCCCCccccccc
Q psy8742 776 NPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGL-EGM-GPEHSSARLERFLQMSDDEPIRVILVL 853 (968)
Q Consensus 776 g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~-~g~-GpeHSs~r~er~lql~~~~~~~~p~~~ 853 (968)
|.+|++ +.++.+|. -| .||+...+..+ ..++|++.+.|+ .|. ||.|++-+.+.+| .++|
T Consensus 72 G~~pi~--~~~~~f~~-~a---~~~~~~~~~~~---~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~-------~~iP--- 132 (168)
T smart00861 72 GLRPVV--AIFFTFFD-RA---KDQIRSDGAMG---RVPVVVRHDSGGGVGEDGPTHHSQEDEALL-------RAIP--- 132 (168)
T ss_pred CCCcEE--EeeHHHHH-HH---HHHHHHhCccc---CCCEEEEecCccccCCCCccccchhHHHHH-------hcCC---
Confidence 987776 76666544 67 89988876544 678999986544 666 9978777799999 8899
Q ss_pred chhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCc-EEEEecc
Q psy8742 854 VPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKP-LVLMTPK 901 (968)
Q Consensus 854 ~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~P-li~~~pK 901 (968)
||+|+.|++|.|++++|+.++.++. +| +|++++|
T Consensus 133 -------------~~~v~~P~~~~e~~~~l~~a~~~~~-~p~~i~~~~~ 167 (168)
T smart00861 133 -------------GLKVVAPSDPAEAKGLLRAAIRRDD-GPPVIRLERK 167 (168)
T ss_pred -------------CcEEEecCCHHHHHHHHHHHHhCCC-CCEEEEecCC
Confidence 9999999999999999999997632 56 7777665
No 44
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.67 E-value=4.1e-14 Score=173.46 Aligned_cols=443 Identities=12% Similarity=0.084 Sum_probs=251.1
Q ss_pred CCCccccCchhhhHhhHhHhhcC--CCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCccc
Q psy8742 415 PSHLEAVDPVVQGKTRAEQFYRG--DGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGF 489 (968)
Q Consensus 415 pShLea~~PvA~G~A~A~q~~~~--~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~ 489 (968)
...||.+.++|+|+|+|.++... ..+..+.-++|+.|||- ..||.++|++.+| +|. .+|+||.+|.+.+
T Consensus 188 TGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGE-l~EG~~wEA~~~Aa~~kLd-----NLi~IvD~N~~ql 261 (889)
T TIGR03186 188 TGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGE-MDEPESIGALSLAARERLD-----NLVFVINCNLQRL 261 (889)
T ss_pred CCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchh-hccHHHHHHHHHHHHhCCC-----CEEEEEeCCCCcc
Confidence 35689999999999999986431 12344567999999999 7999999999999 665 5999999999999
Q ss_pred ccCCCcccc-cccHhHhhhhcCCcEEEE----------------------------------------------------
Q psy8742 490 TTDPRFSRS-SSYCTDVARVVNAPIFHV---------------------------------------------------- 516 (968)
Q Consensus 490 TT~~~~~rs-s~~~td~Ak~~giP~~hV---------------------------------------------------- 516 (968)
..+...... ...+.++-+++|+.++.|
T Consensus 262 DG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~ 341 (889)
T TIGR03186 262 DGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPAL 341 (889)
T ss_pred CCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHH
Confidence 988765322 456888999999999999
Q ss_pred -----------------eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHH
Q psy8742 517 -----------------NSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALD 579 (968)
Q Consensus 517 -----------------DGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~ 579 (968)
+|+|+.+|+.|.+.|++. -++|++|.+.|.--+|-+..-+..- .+ |.
T Consensus 342 ~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~---~~~PTvIla~TvkG~G~~~~g~~~~-------~~--H~---- 405 (889)
T TIGR03186 342 AALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH---EGRPTVILAKTMKGFGMGAIGQGRM-------TT--HQ---- 405 (889)
T ss_pred HHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCEEEEEEeeecCCCCcccCccc-------cc--cC----
Confidence 699999999999999852 3589999999988887543322110 00 00
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhh
Q psy8742 580 KYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRF 659 (968)
Q Consensus 580 ~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~ 659 (968)
.+.++.+++++.++.+.--+.+ +.+ .|..++.|... .+.++.+.++.
T Consensus 406 --------~~~l~~e~~~~~r~~~g~~~~d--------------e~~--~~~~~~~~~~~---------s~~~~~l~~~r 452 (889)
T TIGR03186 406 --------QKKLDVEALLAFRDRFRLPLSD--------------ADV--EQLKFYKPDED---------SAEMRYLHARR 452 (889)
T ss_pred --------cCcCCHHHHHHHHHHcCCCCCh--------------HHh--hcccccCCCCC---------CHHHHHHHHHH
Confidence 0223333333333322111100 000 01111111100 00011111000
Q ss_pred ---c-CCCCCCchhh---HHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhh---hh----cCCcEEEeccccCCCc---
Q psy8742 660 ---S-SPPPNATEFV---IHKGIERILKARLQMVESRTVDWALGEAMAFGSL---LK----EGIHVRLSGQDVERGT--- 722 (968)
Q Consensus 660 ---~-~~P~~~~~f~---~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sL---l~----eg~~Vrl~GqDv~rGt--- 722 (968)
. .+|.+..... ..|.+. .+ ..... +.-+=-++=.+||+.+ |. -|.+|+-.--|+.|=|
T Consensus 453 ~~l~g~~p~r~~~~~~~~~~p~~~-~~---~~~~~-~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~ 527 (889)
T TIGR03186 453 AALGGYLPRRRTAATHALAVPALP-SW---GRFAL-DAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMA 527 (889)
T ss_pred HHcCCCCCCCCCCCccccCCCCcc-hh---hhhhc-cCCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCch
Confidence 0 0110000000 000000 00 00000 0000001223556655 22 3778888889988722
Q ss_pred --cccccceeeeeccCCceeecCCC-----CCCCCCCcEeecCCcchHHHHH--HhhhcccC----CCCccccccchhhh
Q psy8742 723 --FSHRHHVLHHQTVDKATYRPLNN-----LYPDQAPYTVCNSSLSEFGVLG--FELGFSMT----NPNTLVCWEAQFGD 789 (968)
Q Consensus 723 --FshRHav~~dq~~~~~~~~~~~~-----l~~~~g~~~v~nspLsE~avlG--~~~G~s~~----g~~~l~iWE~qfgD 789 (968)
|.| .-+|.+. |..|.|-.. ..+.+ +.|++|.-|+|...+| .+.|.|++ +..|++++=++|+=
T Consensus 528 ~~f~~--~gi~~~~--gq~y~~~d~~~~~~y~e~~-p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~ 602 (889)
T TIGR03186 528 NLFRQ--VGIYSPL--GQRYEPEDLGSMLYYREDT-DGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGF 602 (889)
T ss_pred hhhcc--ccccCcc--cccCCccchHHHHHHhhcC-CCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHh
Confidence 311 1122222 223444321 11333 8899999999999999 88886666 66899887777651
Q ss_pred hHhhhhHHHHHHHhhhccccccccCcEEE-cCccC---CCCCcccCCChHHHHhcccCCCCcccccccchhhhhhhcccC
Q psy8742 790 FNNTAQCIIDQFISSGQAKWVRQSGLVML-LPHGL---EGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHD 865 (968)
Q Consensus 790 F~~~aQvi~Dq~i~~~~~kw~~~~~lv~~-lP~G~---~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~ 865 (968)
|=+.||+.+++-. +.+++++ .++|. .+-|+.|-+- |....+ ..+|
T Consensus 603 -----~Ra~Dqir~a~~~----~a~v~lvG~~aG~tTlg~eG~tHq~~--eDial~-----r~iP--------------- 651 (889)
T TIGR03186 603 -----QRIGDLIWAAADQ----RARGFLIGATSGKTTLGGEGLQHQDG--TSHLAA-----STVP--------------- 651 (889)
T ss_pred -----hhHHHHHHHHhhc----CCCcEEEEECCCccCCCCCcccccch--HhHHHH-----hhCC---------------
Confidence 2237888776422 2444444 45566 2458888764 555533 4688
Q ss_pred CCeEEEecCCHhHHHHHHHHHHhc----CCCCcEEEEecccCcCCCCCCCC-cccccCCCceE--EeccCCCccccCCCC
Q psy8742 866 INWIIANCTTPANLFHILRRQIAL----PFRKPLVLMTPKSLLRHPEAKSS-FDDMIEGTEFL--RVIPDDSISERKADS 938 (968)
Q Consensus 866 ~n~~V~~pstpa~~~hlLr~q~~~----~~r~Pli~~~pK~Llr~~~a~s~-l~e~~~g~~F~--~vi~d~~~~~~~~~~ 938 (968)
||.|+.|+.+.+...+++..+++ +...|+-+=..+.-+.+|.-... +..+..|. -+ -++.+.. .+.
T Consensus 652 -n~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~p~~~~~~~~~~~~gi-~kg~y~l~~~~-----~~g 724 (889)
T TIGR03186 652 -NCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQPSLPEDRLDAVRRGI-LKGMYPLDPAA-----LAA 724 (889)
T ss_pred -CCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCCCCcCCCcccchhcch-hheeeEeeccC-----CCC
Confidence 99999999999999999876652 22367766333222222211100 01122221 00 1222210 122
Q ss_pred ccEEEEecchhHHHHHHHHHhc
Q psy8742 939 VEKLVFCSGKVYYDLIKARNDN 960 (968)
Q Consensus 939 v~rvilcsGkvyydl~~~r~~~ 960 (968)
-+-.|++||-+-...+++.+..
T Consensus 725 ~dV~LlasG~~v~eAL~AAe~L 746 (889)
T TIGR03186 725 ARVQLLGSGAILGEVQAAARLL 746 (889)
T ss_pred CCEEEEeccHHHHHHHHHHHHH
Confidence 3457999999999988877653
No 45
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.66 E-value=3.9e-16 Score=163.03 Aligned_cols=118 Identities=20% Similarity=0.300 Sum_probs=102.7
Q ss_pred CCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccc
Q psy8742 414 NPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFT 490 (968)
Q Consensus 414 NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~T 490 (968)
..++||.+.|+|+|+|+|.++ .+.+..++|++|||++ .||.+||+|++| ++| +|+||.||+++++
T Consensus 73 ~~G~lG~gl~~A~G~Ala~k~-----~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~~~------li~vvdnN~~~~~ 140 (195)
T cd02007 73 GTGHSSTSISAALGMAVARDL-----KGKKRKVIAVIGDGAL-TGGMAFEALNNAGYLKSN------MIVILNDNEMSIS 140 (195)
T ss_pred CCCchhhhHHHHHHHHHHHHH-----hCCCCeEEEEEccccc-ccChHHHHHHHHHHhCCC------EEEEEECCCcccC
Confidence 447899999999999999998 3556789999999995 699999999999 788 9999999999999
Q ss_pred cCCCcccccccHhHhhhhcCCcEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCC
Q psy8742 491 TDPRFSRSSSYCTDVARVVNAPIFH-VNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNG 553 (968)
Q Consensus 491 T~~~~~rss~~~td~Ak~~giP~~h-VDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~G 553 (968)
++.. ...++++++|+.++. |||+|++++.+|++.|. +.++|++|++.|+.-.|
T Consensus 141 ~~~~------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~----~~~~P~~I~~~T~kg~g 194 (195)
T cd02007 141 PNVG------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVK----DLKGPVLLHVVTKKGKG 194 (195)
T ss_pred CCCC------CHHHHHHhcCCCccceECCCCHHHHHHHHHHHH----hCCCCEEEEEEEecccC
Confidence 8765 367888889998885 99999999999988764 35789999999987655
No 46
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.62 E-value=1.1e-11 Score=153.09 Aligned_cols=430 Identities=14% Similarity=0.148 Sum_probs=248.9
Q ss_pred CCccccCchhhhHhhHhHhhcC--CCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRG--DGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFT 490 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~--~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~T 490 (968)
..||.+.+.|+|.|++.++..+ -.+..+.-++|+.|||- ..||.++|++.+| +|. .+|+||.+|...+.
T Consensus 203 GSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGE-l~Eg~~~eA~~~A~~~~Ld-----NLi~ivD~N~~~lD 276 (896)
T PRK13012 203 GSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGE-MDEPESIAALSLAAREGLD-----NLVFVINCNLQRLD 276 (896)
T ss_pred CCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhh-hccHHHHHHHHHHHHhCCC-----cEEEEEECCCcccc
Confidence 4578888999999999996421 11345567999999999 7999999999999 665 59999999999998
Q ss_pred cCCCcccc-cccHhHhhhhcCCcEEEE--------------------------e--------------------------
Q psy8742 491 TDPRFSRS-SSYCTDVARVVNAPIFHV--------------------------N-------------------------- 517 (968)
Q Consensus 491 T~~~~~rs-s~~~td~Ak~~giP~~hV--------------------------D-------------------------- 517 (968)
.+....-. ...+.++-+++|+.++.| |
T Consensus 277 G~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~ 356 (896)
T PRK13012 277 GPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELA 356 (896)
T ss_pred CccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHH
Confidence 88765333 356788899999999999 9
Q ss_pred -----------------CCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCC---CCCCCC----CCCHHHHHHHHh
Q psy8742 518 -----------------SDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHN---EIDEPM----FTQPLMYKIIKK 573 (968)
Q Consensus 518 -----------------GnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHn---e~Ddp~----yt~p~~y~~i~~ 573 (968)
|+|+++|+.|.+.|.+. -++|++|-+.|..-+|=+ |..... -...+
T Consensus 357 ~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~---~~~PtvIla~TvkG~G~~~~~e~~~~~H~~~~l~~e------- 426 (896)
T PRK13012 357 ALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH---KGQPTVILAKTKKGYGMGEAGEGRMTTHQQKKLDVE------- 426 (896)
T ss_pred HHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCEEEEEEeeecCCCCcccCCCcccccCCCCCHH-------
Confidence 99999999999988752 357999999999888844 222211 11122
Q ss_pred CCCHHHHHHHHHHHccC-CCHHHHHHH--------HHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCccCC
Q psy8742 574 TPPALDKYANKLIEEKV-VTEEQVKDV--------KEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVST 644 (968)
Q Consensus 574 ~~dpi~~y~~~Li~~Gv-~t~ee~~~i--------~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 644 (968)
-+..|++++ |+ +++++++++ ..+++. +.+..+ +.....|.... .++.
T Consensus 427 ---~~~~~r~~~---g~p~~d~~~~~~pf~~p~~~~~~~~~-l~~r~~-~l~g~~P~r~~----~~~~------------ 482 (896)
T PRK13012 427 ---ALKAFRDRF---RLPLSDEQLEQLPFYKPAEDSPEMRY-LHARRA-ALGGYLPRRRT----AAPP------------ 482 (896)
T ss_pred ---HHHHHHHHc---CCCCChhhhccCCCcCCccccHHHHH-HHHHHH-HhcCcCCcccc----cccc------------
Confidence 223333333 21 333333220 001111 110000 00000000000 0000
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhh----hhhhhc---CCcEEEeccc
Q psy8742 645 TGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAF----GSLLKE---GIHVRLSGQD 717 (968)
Q Consensus 645 tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~----~sLl~e---g~~Vrl~GqD 717 (968)
+ .+|. .+.| ...+.. ++.-. ++=-+|| ..|+.+ +.+|...--|
T Consensus 483 --l-------------~~p~-~~~~------~~~~~~------~~~~~--isTr~Afgr~L~~L~k~~~~~~~iV~i~aD 532 (896)
T PRK13012 483 --L-------------PVPP-LSAF------AQFALG------AGGKE--MSTTMAFVRMLGNLLKDKALGPRIVPIVAD 532 (896)
T ss_pred --c-------------CCCc-hhhH------HHhhcc------cCCCc--chHHHHHHHHHHHHHhccccCCCEEEeccc
Confidence 0 0110 0001 000000 00000 0111233 345555 8888888889
Q ss_pred cCCCc-----cccccceeeeeccCCceeec-----CCCCCCCCCCcEeecCCcchHHHHH--HhhhcccC----CCCccc
Q psy8742 718 VERGT-----FSHRHHVLHHQTVDKATYRP-----LNNLYPDQAPYTVCNSSLSEFGVLG--FELGFSMT----NPNTLV 781 (968)
Q Consensus 718 v~rGt-----FshRHav~~dq~~~~~~~~~-----~~~l~~~~g~~~v~nspLsE~avlG--~~~G~s~~----g~~~l~ 781 (968)
+.|-| |.+. -++.+. +..|.| +....+.+ +.|++|.-|+|.+.+| .+.|.|+. +..|++
T Consensus 533 la~t~gm~~~f~~~--~i~~~~--gq~y~~~d~~~~~~yke~~-pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~ 607 (896)
T PRK13012 533 EARTFGMANLFRQV--GIYSPL--GQLYEPEDAGSLLYYREAK-DGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFY 607 (896)
T ss_pred cccccCcccccccc--cccccc--cccccccchhHHhhhhhCC-CCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEE
Confidence 87511 2111 111122 224544 22233445 6899999999999977 66665554 458888
Q ss_pred cccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccC---CCCCcccCCChHHHHhcccCCCCcccccccchhhh
Q psy8742 782 CWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGL---EGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEF 858 (968)
Q Consensus 782 iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~---~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~ 858 (968)
++=++|+ +|=+.||+-+++-++ ..++.+...||- .+-||+|-+- |....+ ..+|
T Consensus 608 ~tfs~F~-----~~R~~Dqir~a~~~~---~~~vlig~T~gg~tlg~dG~THQ~~--eslal~-----RaIP-------- 664 (896)
T PRK13012 608 IYYSMFG-----FQRVGDLIWAAADQR---ARGFLLGATAGRTTLGGEGLQHQDG--HSHLLA-----STIP-------- 664 (896)
T ss_pred EehHHHH-----HHHHHHHHHHHHhcc---cCCeEEEEeCcccccCCCCCCCcch--HhHHHH-----HhCC--------
Confidence 6655443 455578877665332 346777777865 4678888775 544433 5688
Q ss_pred hhhcccCCCeEEEecCCHhHHHHHHHHHHhc--CC--CCcEEEEecccCcCCCCCCCC-cccccCCCceEEeccCCCccc
Q psy8742 859 AVRQLHDINWIIANCTTPANLFHILRRQIAL--PF--RKPLVLMTPKSLLRHPEAKSS-FDDMIEGTEFLRVIPDDSISE 933 (968)
Q Consensus 859 ~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~--~~--r~Pli~~~pK~Llr~~~a~s~-l~e~~~g~~F~~vi~d~~~~~ 933 (968)
||.|+.|+.+.+...+++..+++ .. ..|..+-....=+.+|..... -..+..|. -++.+.
T Consensus 665 --------N~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~p~~~~~~~~~i~kG~---y~l~~~---- 729 (896)
T PRK13012 665 --------NCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQPALPEGAEEGILKGM---YRLAAA---- 729 (896)
T ss_pred --------CCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCCCCCCccchhccccCc---EEEecc----
Confidence 99999999999999999987754 11 256443322221211111101 12344443 233221
Q ss_pred cCCCCccEEEEecchhHHHHHHHHHhc
Q psy8742 934 RKADSVEKLVFCSGKVYYDLIKARNDN 960 (968)
Q Consensus 934 ~~~~~v~rvilcsGkvyydl~~~r~~~ 960 (968)
.+.. +..||+||-+-...+++.+..
T Consensus 730 ~~g~--dv~LiasGs~v~eAl~AAe~L 754 (896)
T PRK13012 730 AEAP--RVQLLGSGAILREVLAAARLL 754 (896)
T ss_pred CCCC--CEEEEEecHHHHHHHHHHHHH
Confidence 1222 348999999999888877653
No 47
>KOG0523|consensus
Probab=99.58 E-value=5.2e-13 Score=154.65 Aligned_cols=401 Identities=16% Similarity=0.189 Sum_probs=243.0
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRF 495 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~ 495 (968)
.|||..+..|+|+|++.++. ...+.-++|++|||. ..+|.+||+|++|. +|..+-+|.|.-||++++++++..
T Consensus 118 G~lgQgis~a~GmA~~~k~~----~k~~~rv~~vlGDG~-~~eG~~~EA~s~Ag--~l~ldnLVai~D~n~is~~g~t~~ 190 (632)
T KOG0523|consen 118 GPLGQGISNAVGMAYAGKHL----GKASNRVYCVLGDGC-LTEGSVWEAMSLAG--HLKLDNLVAIYDNNKISIDGATSL 190 (632)
T ss_pred CCccchHHHHHHHHHHHHhh----ccccceEEEEEcCch-hccchHHHHHhhhh--hcccCCEEEEEccccccCCCCCcc
Confidence 68999999999999999984 223667999999999 68999999999994 445567999999999999998887
Q ss_pred ccccccHhH-hhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHHHHhC
Q psy8742 496 SRSSSYCTD-VARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKT 574 (968)
Q Consensus 496 ~rss~~~td-~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~i~~~ 574 (968)
+.. ..+.. +..+||+.++.|||.|++++..|...|. ..-++|+.|-+.|+--+|---.. -..|...
T Consensus 191 ~~~-~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~---~~k~kpt~i~~~t~~g~G~~~ig---------~~~~Hg~ 257 (632)
T KOG0523|consen 191 GFD-EDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAK---SVKGKPTAIKATTFIGRGSPYIG---------SESVHGA 257 (632)
T ss_pred ccc-ccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhh---hccCCceeeeeeeeeecCccccc---------cccccCC
Confidence 755 34555 7789999999999999999999999987 24578999999998877632211 1234333
Q ss_pred CCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCccCCCCCCHHHHHH
Q psy8742 575 PPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVH 654 (968)
Q Consensus 575 ~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~ 654 (968)
+++....++-=-..|+ ....-.+-.+ .+..|..+.++. ..+. -.+..-
T Consensus 258 pl~~~~~~~~k~~~~~--P~~~~~v~~~-----------~~~~p~~~~~~~--------~~~~-------~~i~~~---- 305 (632)
T KOG0523|consen 258 PLGEDDVERVKSIKGL--PVLIFVVPEK-----------VKLYPEKPVEDA--------RAIS-------VRIPKI---- 305 (632)
T ss_pred cchhhHHHHHHhhcCC--cceeEEeccc-----------cccCCCcccccc--------cccc-------cCcCcc----
Confidence 3332211110000010 0000000000 001111111100 0000 000000
Q ss_pred HHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeec
Q psy8742 655 IGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQT 734 (968)
Q Consensus 655 i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~ 734 (968)
...++| .|.+-. +...-|. ++.|+|+ .|-....+|...--|..-+||
T Consensus 306 ---~~~~~p----~yk~~D---k~~Atrk----------~~~~aL~--~l~~~~~~vI~~~ad~~~st~----------- 352 (632)
T KOG0523|consen 306 ---WEKSLP----TYKVGD---KAVATRK----------AFGEALA--ALAEADPRVIGGSADLKNSTL----------- 352 (632)
T ss_pred ---ccccCC----ccccCC---hhhhHHH----------HHHHHHH--HHhhcCcCeEEEecccCCCch-----------
Confidence 000111 010000 0001111 1233332 222333344333344444443
Q ss_pred cCCceeecCCCCC-CCCCCcEeecCCcchHHHHHHhhhcccCCC-CccccccchhhhhHhhhhHHHHHHHhhhccccccc
Q psy8742 735 VDKATYRPLNNLY-PDQAPYTVCNSSLSEFGVLGFELGFSMTNP-NTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQ 812 (968)
Q Consensus 735 ~~~~~~~~~~~l~-~~~g~~~v~nspLsE~avlG~~~G~s~~g~-~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~ 812 (968)
..+. ++| +.|-+|--+.|...+|++.|.|..|+ .|.+ .-|..|+--| +||+.-.+- .+
T Consensus 353 ---------td~~~~~~-p~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~---~tf~~F~trA---~dqvr~~a~----s~ 412 (632)
T KOG0523|consen 353 ---------TDFFPKRF-PERFIECGIAEQNMVGIANGIACRGRTIPFC---GTFAAFFTRA---FDQVRMGAL----SQ 412 (632)
T ss_pred ---------hhhccccC-ccceEEEeeehhhhHHhhhchhcCCCccchh---HHHHHHHHHh---hhheeehhh----cc
Confidence 1333 344 77999999999999999999999999 6776 5677777777 898764432 25
Q ss_pred cCcEEEcCc-cC-CC-CCcccCCChHHH--HhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHH
Q psy8742 813 SGLVMLLPH-GL-EG-MGPEHSSARLER--FLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQI 887 (968)
Q Consensus 813 ~~lv~~lP~-G~-~g-~GpeHSs~r~er--~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~ 887 (968)
++++...-| |. -| -||.|-- +|- || ..+| ||.|..|+.....+++...++
T Consensus 413 ~~v~~v~th~~i~~GeDGPth~~--iedlA~f-------rsiP----------------n~~v~~PaD~~et~~av~~Aa 467 (632)
T KOG0523|consen 413 ANVIYVATHDSIGLGEDGPTHQP--IEDLAMF-------RSIP----------------NMIVFRPADGNETENAVATAA 467 (632)
T ss_pred CCcEEEEEeccccccCCCccccc--HHHHHHH-------HhCC----------------CceEEecCchHHHHHHHHHHH
Confidence 677777777 22 33 4787754 453 45 6789 999999999999999999999
Q ss_pred hcCCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccccCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 888 ALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 888 ~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
..+ +.|.|+-.+..-+-. ..-++..+-+.|. -|+-|. + -+-+++.+|---|..+++-+.
T Consensus 468 ~~~-~~p~i~~~~r~~~~~-~~~~~~~~igkg~---~vl~~~-------~-~dV~LiG~Gs~v~~cl~AA~~ 526 (632)
T KOG0523|consen 468 NTK-GTPSIRTLSRQNLPI-YNNTEIEEIGKGK---YVLQEV-------E-PDVILIGTGSEVQECLEAAEL 526 (632)
T ss_pred hcC-CCeeEEEecCccccc-cCCCchhhhcccc---EEEecC-------C-CCEEEEeccHHHHHHHHHHHH
Confidence 877 347777655443211 1113334444443 244442 1 234789999977777666543
No 48
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.57 E-value=1.5e-10 Score=142.51 Aligned_cols=442 Identities=14% Similarity=0.164 Sum_probs=245.9
Q ss_pred ccccCchhhhHhhHhHhhcC--CCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccC
Q psy8742 418 LEAVDPVVQGKTRAEQFYRG--DGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTD 492 (968)
Q Consensus 418 Lea~~PvA~G~A~A~q~~~~--~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~ 492 (968)
+|.+.+.|+|.|++.++..+ -.++.+.-++|++|||- ..||.++|++.+| +|. .+|+||..|...+..+
T Consensus 197 ~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGE-ldEg~~~EA~~~A~~~~Ld-----NLi~ivD~N~q~lDG~ 270 (891)
T PRK09405 197 MGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGE-MDEPESLGAISLAAREKLD-----NLIFVINCNLQRLDGP 270 (891)
T ss_pred cchhHHHHHHHHHhCccccccccccCCCceEEEEEcchh-hccHHHHHHHHHHHHhCCC-----CEEEEEECCCcccCCc
Confidence 45666889999999986321 11345567999999999 7999999999999 665 5999999999999888
Q ss_pred CCcc-cccccHhHhhhhcCCcEEEE--------------------------e----------------------------
Q psy8742 493 PRFS-RSSSYCTDVARVVNAPIFHV--------------------------N---------------------------- 517 (968)
Q Consensus 493 ~~~~-rss~~~td~Ak~~giP~~hV--------------------------D---------------------------- 517 (968)
.... .....+.++-+++|+.++.| |
T Consensus 271 v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~l 350 (891)
T PRK09405 271 VRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKAL 350 (891)
T ss_pred cccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHH
Confidence 7653 22457888899999999999 4
Q ss_pred ---------------CCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCC-CCCCCCCCCCHHHHHHHHhCCCHHHHH
Q psy8742 518 ---------------SDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGH-NEIDEPMFTQPLMYKIIKKTPPALDKY 581 (968)
Q Consensus 518 ---------------GnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GH-ne~Ddp~yt~p~~y~~i~~~~dpi~~y 581 (968)
|+|+++++.|.+.|.+. -++|++|-+.|..-+|- +...... .+ |.
T Consensus 351 v~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~---~~~PtvIia~TvkG~G~~~~~e~~~--------~~--H~------ 411 (891)
T PRK09405 351 VADMSDDDIWALNRGGHDPRKVYAAYKAAVEH---KGQPTVILAKTIKGYGMGEAGEGKN--------IA--HQ------ 411 (891)
T ss_pred HhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC---CCCCEEEEEeceecCCCCcccCCCc--------cc--cC------
Confidence 99999999999998853 36799999999988886 3221110 01 10
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhh--
Q psy8742 582 ANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRF-- 659 (968)
Q Consensus 582 ~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~-- 659 (968)
.+.++++++++.++.+.--|.+ +..-..+|-.+ .. +.+.++.+.++.
T Consensus 412 ------~~~l~~e~~~~~r~~~g~~~~d-------------~~~~~~~~~~~---~~---------~s~e~~~l~~~r~~ 460 (891)
T PRK09405 412 ------VKKLDLDDLKHFRDRFNIPISD-------------EQLEKLPYYKP---GE---------DSPEIKYLHERRKA 460 (891)
T ss_pred ------CCCCCHHHHHHHHHHcCCCCCh-------------hHhccCCCcCC---CC---------CCHHHHHHHHHHHH
Confidence 0123334433333322111100 00000011110 00 000111111111
Q ss_pred -c-CCCCCCchhhHHHHHH-HHHHHHHHhhhhhchhhhhhhHhhhh----hhhhc---CCcEEEeccccCC-----Cccc
Q psy8742 660 -S-SPPPNATEFVIHKGIE-RILKARLQMVESRTVDWALGEAMAFG----SLLKE---GIHVRLSGQDVER-----GTFS 724 (968)
Q Consensus 660 -~-~~P~~~~~f~~h~~l~-~~l~~r~~~~~~~~idwa~aE~LA~~----sLl~e---g~~Vrl~GqDv~r-----GtFs 724 (968)
. -+|.+.... +.+. .....-....++ .-+=-++=.+||+ .|+.+ |.+|+..--|+.| |-|
T Consensus 461 l~g~~p~r~~~~---~~~~~P~~~~~~~~~~~-~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f- 535 (891)
T PRK09405 461 LGGYLPARRPKF---EPLEVPALSAFEALLKG-SGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLF- 535 (891)
T ss_pred cCCCCCCCCCCC---CCCCCCChhhHHHhhcc-CCCCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhh-
Confidence 0 011000000 0000 000000000000 0000011123444 44454 8899999999987 222
Q ss_pred cccceeeeeccCCceeecCCC-----CCCCCCCcEeecCCcchHHHHH--HhhhcccC----CCCccccccchhhhhHhh
Q psy8742 725 HRHHVLHHQTVDKATYRPLNN-----LYPDQAPYTVCNSSLSEFGVLG--FELGFSMT----NPNTLVCWEAQFGDFNNT 793 (968)
Q Consensus 725 hRHav~~dq~~~~~~~~~~~~-----l~~~~g~~~v~nspLsE~avlG--~~~G~s~~----g~~~l~iWE~qfgDF~~~ 793 (968)
|-.-+|.+. |..|.|-.. ..+.| +.|++|.-|+|...+| .+.|.|++ +..|++++=++||
T Consensus 536 -~~~gi~~~~--gq~y~~~d~~~~~~yke~~-PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~----- 606 (891)
T PRK09405 536 -RQIGIYNPH--GQLYTPVDRDQLMYYKESK-DGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFG----- 606 (891)
T ss_pred -ccccccccc--cccccccccHHHHHHHHcC-CCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhh-----
Confidence 111122222 123444322 12344 8899999999999999 88886666 6689987777765
Q ss_pred hhHHHHHHHhhhccccccccCcEEEcCccC---CCCCcccCCChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEE
Q psy8742 794 AQCIIDQFISSGQAKWVRQSGLVMLLPHGL---EGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWII 870 (968)
Q Consensus 794 aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~---~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V 870 (968)
.|=++||+.+++-+. ..++.|..-||. .|-|++|-+. |....+ ..+| ||.|
T Consensus 607 ~~Ra~Dqir~a~~~~---~~~v~iggt~gg~tl~~eG~qHqdg--~s~~l~-----raiP----------------n~tv 660 (891)
T PRK09405 607 FQRIGDLAWAAGDQR---ARGFLLGGTAGRTTLNGEGLQHEDG--HSHILA-----STIP----------------NCVS 660 (891)
T ss_pred hhhHHHHHHHHHHhc---CCCeEEEEECccccCCCCcccCCch--hhHHHH-----hhCC----------------CCEE
Confidence 133378887766332 244444444433 3567777665 333221 5689 9999
Q ss_pred EecCCHhHHHHHHHHHHhc---CCCCcEEEEec-ccCcCCCCCCCCcccccCCCceEEeccCCCccccCCCCccEEEEec
Q psy8742 871 ANCTTPANLFHILRRQIAL---PFRKPLVLMTP-KSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCS 946 (968)
Q Consensus 871 ~~pstpa~~~hlLr~q~~~---~~r~Pli~~~p-K~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~v~rvilcs 946 (968)
+.|+.+.+...+++..+++ +...|..+++= ..=+-++. ...-.+|.-+.- --++.+.. ....+-+-.|++|
T Consensus 661 ~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne~~~~~~-~pe~~~~~igKg-~y~Lr~g~---~~~~~~dV~Llas 735 (891)
T PRK09405 661 YDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVMNENYHQPA-MPEGAEEGILKG-MYKLETAE---GKKGKPKVQLLGS 735 (891)
T ss_pred EeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCCC-CCcccccccceE-EEEeccCC---CCCCCCCEEEEec
Confidence 9999999999999998773 22334444331 01011111 000012322211 02233321 0122235689999
Q ss_pred chhHHHHHHHHHhc
Q psy8742 947 GKVYYDLIKARNDN 960 (968)
Q Consensus 947 Gkvyydl~~~r~~~ 960 (968)
|-+-...+++.+..
T Consensus 736 G~~v~eAL~AAe~L 749 (891)
T PRK09405 736 GTILREVLEAAEIL 749 (891)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999998887754
No 49
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.56 E-value=2e-14 Score=155.86 Aligned_cols=130 Identities=19% Similarity=0.174 Sum_probs=113.2
Q ss_pred CCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccc
Q psy8742 414 NPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFT 490 (968)
Q Consensus 414 NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~T 490 (968)
..++||.+.|.|+|+|+|.++ .+.+..++|+.|||+ ..+|.++|+|++| +|| -+|+|+.||.|+++
T Consensus 103 ~~GslG~gl~~avG~Ala~~~-----~~~~~~v~~i~GDG~-~~~G~~~eal~~a~~~~l~-----~li~vvdnN~~~~~ 171 (255)
T cd02012 103 TTGSLGQGLSVAVGMALAEKL-----LGFDYRVYVLLGDGE-LQEGSVWEAASFAGHYKLD-----NLIAIVDSNRIQID 171 (255)
T ss_pred CCcchhhHHHHHHHHHHHHHH-----hCCCCEEEEEECccc-ccccHHHHHHHHHHHcCCC-----cEEEEEECCCcccc
Confidence 347899999999999999998 355678999999999 5899999999999 776 48899999999998
Q ss_pred cCCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCC
Q psy8742 491 TDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEI 557 (968)
Q Consensus 491 T~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~ 557 (968)
++..........+++++++|++++.|||+|++++..|.++|.+.. ++|++|++.|.+-.||+..
T Consensus 172 ~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~---~~P~~I~~~t~kg~g~~~~ 235 (255)
T cd02012 172 GPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSK---GKPTLIIAKTIKGKGVPFM 235 (255)
T ss_pred CcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcC---CCCEEEEEEeecccccCcc
Confidence 876555555678999999999999999999999999999987532 7899999999999999843
No 50
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.55 E-value=8.9e-13 Score=153.61 Aligned_cols=359 Identities=17% Similarity=0.244 Sum_probs=228.8
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCC----CCCCCcccEEEEEEcCCccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSD----LPDYTTHGTIHIVVNNQIGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~----LP~y~~gGvIfVVeNNqig~TT 491 (968)
+|-.+.++.|+|+|.|+.. .+++.-+|+++||||+ .-|..+|+||-+. -+ +|.|+.+|+-.|+.
T Consensus 115 GHsSTSiSaalG~A~A~~~-----~g~~~~vvaVIGDGAl-t~GmA~EALN~ag~~~~~~------~iVILNDNeMSIs~ 182 (627)
T COG1154 115 GHSSTSISAALGMAKARDL-----KGEDRNVVAVIGDGAL-TGGMAFEALNNAGADLKSN------LIVILNDNEMSISP 182 (627)
T ss_pred CchHHHHHHHhhHHHHHHh-----cCCCCcEEEEECCccc-cchHHHHHHhhhhhccCCC------EEEEEeCCCcccCC
Confidence 5667778999999999998 5677889999999995 6899999999983 45 99999999999987
Q ss_pred CCC-------cccccc-c------H--------------hH--------------hhhhcCCcEE-EEeCCCHHHHHHHH
Q psy8742 492 DPR-------FSRSSS-Y------C--------------TD--------------VARVVNAPIF-HVNSDDPEAVIHVC 528 (968)
Q Consensus 492 ~~~-------~~rss~-~------~--------------td--------------~Ak~~giP~~-hVDGnD~eAV~~a~ 528 (968)
+.. .-|+++ | . .. +-+.+|+.++ -|||+|.+++..+.
T Consensus 183 nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~L 262 (627)
T COG1154 183 NVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTL 262 (627)
T ss_pred CccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHH
Confidence 642 122221 0 0 00 1223466655 57999999999888
Q ss_pred HHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy8742 529 NLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICE 608 (968)
Q Consensus 529 ~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~ 608 (968)
+.|. ..++|+||+++|-.-.|-. |.| .||.. |- |+
T Consensus 263 k~~k----d~~gPvllHv~T~KGKGY~---------pAE-------~d~~~-~H------~v------------------ 297 (627)
T COG1154 263 KNAK----DLKGPVLLHVVTKKGKGYK---------PAE-------EDPIK-YH------GV------------------ 297 (627)
T ss_pred HHHh----cCCCCEEEEEEecCCCCCC---------hhh-------cChhh-cc------CC------------------
Confidence 8775 5789999999997655521 111 12211 10 00
Q ss_pred HHHHHHhhccCCCCccccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhh
Q psy8742 609 EAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVES 688 (968)
Q Consensus 609 ~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~ 688 (968)
.|. ++.. .+...+ ..++..+.. -.+-..|.++.+++++++
T Consensus 298 --------~~f-~~~~------tg~~~~-----~~~~~~sys------------------~vf~~~L~~~a~~d~~iv-- 337 (627)
T COG1154 298 --------GPF-DPIE------TGQSKK-----SKPSAPSYT------------------KVFGDTLCELAAKDEKIV-- 337 (627)
T ss_pred --------CCC-Cccc------cCccCC-----CCCCCCCHH------------------HHHHHHHHHHHhhCCCeE--
Confidence 000 0000 000000 000101110 011122333333444433
Q ss_pred hchhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHH
Q psy8742 689 RTVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGF 768 (968)
Q Consensus 689 ~~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~ 768 (968)
|..-|| ..|| -|..++++| |.|.+|.-|+|...+-|
T Consensus 338 -----aITaAM-------------------~~gt-------------------GL~~F~~~f-P~R~fDVGIAEQHAVT~ 373 (627)
T COG1154 338 -----AITAAM-------------------PEGT-------------------GLVKFSKKF-PDRFFDVGIAEQHAVTF 373 (627)
T ss_pred -----EEecCC-------------------CCCC-------------------ChHHHHHhC-chhheehhhhHHHHHHH
Confidence 000011 1121 244456667 79999999999999999
Q ss_pred hhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcC-ccCCC-CCcccCCChHHHHhcccCCCC
Q psy8742 769 ELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLP-HGLEG-MGPEHSSARLERFLQMSDDEP 846 (968)
Q Consensus 769 ~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP-~G~~g-~GpeHSs~r~er~lql~~~~~ 846 (968)
+.|+|..|.+|++ +.|.-|+.-| +||++---- .+..|+++.+= .|..| -|+.|.-.===.||
T Consensus 374 AAGlA~~G~kPvv---aIYSTFLQRA---YDQliHDva---iqnLPV~faIDRAGivG~DG~TH~G~fDls~l------- 437 (627)
T COG1154 374 AAGLAAEGMKPVV---AIYSTFLQRA---YDQLIHDVA---IQNLPVTFAIDRAGIVGADGPTHQGLFDLSFL------- 437 (627)
T ss_pred HHHHHhCCCCCEE---EEecHHHHHH---HHHHHHHHH---hccCCeEEEEecCcccCCCCCccccHHHHHHH-------
Confidence 9999999999998 8899999999 999874210 12468887775 46655 48889877444577
Q ss_pred cccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCCCceEEec
Q psy8742 847 IRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVI 926 (968)
Q Consensus 847 ~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi 926 (968)
..|| ||.|++|++.....++|+.++.-+ ..|+.|=-|+.---.......++.+.-|. ++- +
T Consensus 438 ~~iP----------------nmvi~aP~de~el~~ml~ta~~~~-~gP~AiRyPrg~~~~~~~~~~~~~~~~Gk-~~i-~ 498 (627)
T COG1154 438 RCIP----------------NMVIMAPRDEEELRQMLYTALAQD-DGPVAIRYPRGNGVGVILTPELEPLEIGK-GEL-L 498 (627)
T ss_pred hcCC----------------CcEEecCCCHHHHHHHHHHHHhcC-CCCeEEEecCCCCCCCCcccccccccccc-eEE-E
Confidence 7899 999999999999999999999865 14999988876321111111123332332 222 1
Q ss_pred cCCCccccCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 927 PDDSISERKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 927 ~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
- .. -+-+|||.|..++.-++..++
T Consensus 499 ~-------~G--~~vail~~G~~~~~al~vae~ 522 (627)
T COG1154 499 K-------EG--EKVAILAFGTMLPEALKVAEK 522 (627)
T ss_pred e-------cC--CcEEEEecchhhHHHHHHHHH
Confidence 1 22 335899999999987776665
No 51
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=3.9e-12 Score=149.10 Aligned_cols=421 Identities=14% Similarity=0.170 Sum_probs=240.9
Q ss_pred CCccccCchhhhHhhHhHhhcCC--CCC---ceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGD--GEG---KKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFT 490 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~--~~~---~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~T 490 (968)
.+||.+++.|||+|+|.+..... ..+ -+.-+.|+.|||- .-+|+.||+..+|. +|..|-.|.+.-+|.|.|.
T Consensus 116 GPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGc-lmEGvs~EA~slAG--~l~L~kLIvlyD~N~IsiD 192 (663)
T COG0021 116 GPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGC-LMEGVSHEAASLAG--HLKLGKLIVLYDSNDISID 192 (663)
T ss_pred CccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCch-HhcccHHHHHHHHh--hcCCCcEEEEEeCCCceec
Confidence 67999999999999999885321 112 2457999999999 57999999999994 3446679999999999999
Q ss_pred cCCCcccccccHhHhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCC-CCCCC-C---CC
Q psy8742 491 TDPRFSRSSSYCTDVARVVNAPIF-HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNE-IDEPM-F---TQ 564 (968)
Q Consensus 491 T~~~~~rss~~~td~Ak~~giP~~-hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne-~Ddp~-y---t~ 564 (968)
.+..... +.+...|.++||+.++ .+||+|++++..|..+|.. ...||+||+|.|-=-+|-.. .+... - --
T Consensus 193 G~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~---~~dkPtlI~~kTiIG~Gsp~kegt~~~HGapLg 268 (663)
T COG0021 193 GDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKA---STDKPTLIIVKTIIGKGSPNKEGTHKVHGAPLG 268 (663)
T ss_pred cCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHh---cCCCCeEEEEEeeeecCCCCcCCCccccCCCCC
Confidence 9887776 4678899999999999 6799999999999999874 46799999999976666433 33322 1 12
Q ss_pred HHHHHHHHhC-----------CCHHHHHHHHHHHccCCCHHHHHHHHHHHHHH---HHHHHHHHhhccCCCCccccCCCC
Q psy8742 565 PLMYKIIKKT-----------PPALDKYANKLIEEKVVTEEQVKDVKEKYDKI---CEEAYVNARKETHIKYKDWLDSPW 630 (968)
Q Consensus 565 p~~y~~i~~~-----------~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~---l~~a~~~A~~~~~~~~~~~~~~~w 630 (968)
+++.+..++. .++...|+ ...++|.--+++++++-+.+++. +.+.++...+...| ..|
T Consensus 269 ~~ev~~~k~~lgw~~~~F~vp~ev~~~~~-~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~~p-------~~~ 340 (663)
T COG0021 269 EEEVAAAKKALGWEPEPFEVPEEVYAAFR-AVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELP-------ANW 340 (663)
T ss_pred HHHHHHHHHHhCCCCCceecCHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhcccCc-------hhH
Confidence 3344432211 11122222 33334433333444333333332 22222222222111 112
Q ss_pred CCCCCCCCC-CccCCCC-CCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhhhhcC
Q psy8742 631 SGFFEGKDP-LKVSTTG-INENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSLLKEG 708 (968)
Q Consensus 631 ~~~~~~~~~-~~~~~tg-v~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sLl~eg 708 (968)
......... .....|- .+.+.|..|+..+ ++++ +|.
T Consensus 341 ~~~~~~~~~~~~~~ATR~as~~~L~~l~~~~-----------------------p~l~-GGS------------------ 378 (663)
T COG0021 341 AAFLPKFEANGKSIATRKASGKALNALAKKL-----------------------PELI-GGS------------------ 378 (663)
T ss_pred HHhhhhhcccccccchHHHHHHHHHHHHhhC-----------------------cccc-ccC------------------
Confidence 111100000 0000110 0111122222221 1111 000
Q ss_pred CcEEEeccccCCCccccccceeeeeccCCceeecCCCCC-CCCCCcEeecCCcchHHHHHHhhhcccCCC-Cccccccch
Q psy8742 709 IHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLY-PDQAPYTVCNSSLSEFGVLGFELGFSMTNP-NTLVCWEAQ 786 (968)
Q Consensus 709 ~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~-~~~g~~~v~nspLsE~avlG~~~G~s~~g~-~~l~iWE~q 786 (968)
-|+..-++ | .......+. +.+ .-|-+.--+-|.++-+..-|+|+.|. +|..===..
T Consensus 379 -------ADLa~Sn~-----------T---~~~~~~~~~~~~~-~gr~i~~GVREf~M~AimNGialhGg~~pyggTFlv 436 (663)
T COG0021 379 -------ADLAPSNL-----------T---KISGSGDFSPENY-AGRYIHFGVREFAMAAIMNGIALHGGFIPYGGTFLV 436 (663)
T ss_pred -------cccccCcc-----------c---cccccCCCCCCCC-CCCeeEEeeHHHHHHHHHHhHHHhcCceeecceehh
Confidence 11111000 0 000111111 122 23445566889999999999999876 665422344
Q ss_pred hhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc---cCCCCCcccCCChHHHHhcccCCCCcccccccchhhhhhhcc
Q psy8742 787 FGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH---GLEGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQL 863 (968)
Q Consensus 787 fgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~---G~~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~ 863 (968)
|.||+.+| +--++ ....|++..+-| |-..-||.|-- +| ||+.= +.||
T Consensus 437 FsdY~r~A------iRlaA----Lm~l~~~~V~THDSIgvGEDGPTHqP--iE---qLa~L--RaiP------------- 486 (663)
T COG0021 437 FSDYARPA------VRLAA----LMGLPVIYVFTHDSIGVGEDGPTHQP--VE---QLASL--RAIP------------- 486 (663)
T ss_pred hHhhhhHH------HHHHH----hcCCCeEEEEecCceecCCCCCCCCc--HH---HHHHh--hccC-------------
Confidence 55665555 11111 235688888888 33445899954 67 44432 5789
Q ss_pred cCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEE-EecccCcCCCCCCCCcccccCCCceEEeccCCCccccCCCCccEE
Q psy8742 864 HDINWIIANCTTPANLFHILRRQIALPFRKPLVL-MTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKL 942 (968)
Q Consensus 864 ~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~-~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~v~rv 942 (968)
|+.|.-|..+-+-....+.++.+.. .|.++ ++-..|=-.+. ++.+....|. + ||-|.. .++.+-+
T Consensus 487 ---N~~V~RPaD~~Et~~aw~~Al~~~~-gPt~LiltRQnlp~l~~--t~~~~~~kGa-Y--vl~~~~-----~~~pd~i 552 (663)
T COG0021 487 ---NLSVIRPADANETAAAWKYALERKD-GPTALILTRQNLPVLER--TDLEGVAKGA-Y--VLKDSG-----GEDPDVI 552 (663)
T ss_pred ---CceeEecCChHHHHHHHHHHHhcCC-CCeEEEEecCCCCccCC--CccccccCcc-E--EEeecC-----CCCCCEE
Confidence 9999999999999999999999743 56555 44444322221 2344454454 2 344421 1145578
Q ss_pred EEecchhHHHHHHHHHh
Q psy8742 943 VFCSGKVYYDLIKARND 959 (968)
Q Consensus 943 ilcsGkvyydl~~~r~~ 959 (968)
|+.||-=--..+++.++
T Consensus 553 liAtGSEV~lAv~Aa~~ 569 (663)
T COG0021 553 LIATGSEVELAVEAAKE 569 (663)
T ss_pred EEecccHHHHHHHHHHH
Confidence 99999755444444443
No 52
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.49 E-value=2.1e-13 Score=144.89 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=118.6
Q ss_pred cCCCcEEeccCCccHHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCcccc
Q psy8742 342 LGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAV 421 (968)
Q Consensus 342 ~g~~divigm~HRgr~~~La~g~gkp~~~ifae~g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~ 421 (968)
.|-.+.++ +.+|... . .+.++|.+|+. .+| +++|..... + ++....+.||.+
T Consensus 16 ~G~~~~~~-p~~~~~~----~----gl~~lf~qfs~----~gg---~psH~~~~t------p------Gi~~~~G~LG~g 67 (227)
T cd02011 16 EGSYSEFY-PEISQDE----E----GMRKLFKQFSF----PGG---IPSHAAPET------P------GSIHEGGELGYS 67 (227)
T ss_pred cCCCcccc-ccccccH----H----HHHHHHHhcCC----CCC---CCCCCcccC------C------CeeecccchhhH
Confidence 45333344 6788654 2 23668888841 112 567976421 1 344455789999
Q ss_pred CchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchH---HHHHHhCCCCCCCcccEEEEEEcCCcccccCCCccc-
Q psy8742 422 DPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVV---FETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSR- 497 (968)
Q Consensus 422 ~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv---~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~r- 497 (968)
+++|+|+|+ ++.+.+++|++|||+ +.+|.+ +|+.+++ ..++.|.++-|+.||+|++++++..++
T Consensus 68 Ls~A~G~a~---------d~~d~iv~~vvGDGE-~eeG~lA~~W~a~~~~--~~~~~~~vLpIld~Ng~~i~~pt~~~~~ 135 (227)
T cd02011 68 LSHAYGAVF---------DNPDLIVACVVGDGE-AETGPLATSWHSNKFL--NPATDGAVLPILHLNGYKISNPTILARI 135 (227)
T ss_pred HHHHHHhhh---------cCCCcEEEEEECcCH-HHHHhHHHHHHhhhhh--cccccCCeEEEEEcCCCcccCCcccccc
Confidence 999999974 245579999999999 899997 6666654 356677888899999999999988764
Q ss_pred ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhc
Q psy8742 498 SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNT 537 (968)
Q Consensus 498 ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~ 537 (968)
+...+.+++++||++.+.|||+|+++|+++++.|+++++.
T Consensus 136 ~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~~ 175 (227)
T cd02011 136 SHEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAIE 175 (227)
T ss_pred CchhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999998874
No 53
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.42 E-value=3.5e-12 Score=140.88 Aligned_cols=163 Identities=15% Similarity=0.122 Sum_probs=115.9
Q ss_pred CccHHHHHHHhcCCCHH-HHHHHh-cCCC------CCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCch
Q psy8742 353 HRGRLNVLANVCRKPLE-QIFTQF-AALE------AADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPV 424 (968)
Q Consensus 353 HRgr~~~La~g~gkp~~-~ifae~-g~~~------~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~Pv 424 (968)
||||..+...+. ++. .++.+. ++.. +++.+.++ .||+... ++.. ++ +..|.+.|+
T Consensus 15 ~~gh~~C~GCG~--~~~~~~l~~~lg~~~v~~~~iGC~~~~~g-~~p~~~~--~~~~-----i~-------~~~G~~~~~ 77 (300)
T PRK11864 15 YPGNAACPGCGA--PLGLRYLLKALGEKTVLVIPASCSTVIQG-DTPKSPL--TVPV-----LH-------TAFAATAAV 77 (300)
T ss_pred cCCCccCCCCCC--HHHHHHHHHHhCCCeEEEeCCCccceecC-CCCcccc--cccc-----ee-------ehhhChHHH
Confidence 777776666654 555 556655 4433 45555433 4565543 2210 11 346889999
Q ss_pred hhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCccccc--
Q psy8742 425 VQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSS-- 499 (968)
Q Consensus 425 A~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~rss-- 499 (968)
|.|.++|.+.+. ..+..+++++|||+ +.+|.+ |+||+| ++| ++|||+||++...|--..+-++
T Consensus 78 A~G~a~A~~~~~----~~~~~Vva~~GDG~-~~~~g~-~~l~~A~~~~~~------v~~vv~dN~~~~~TGgQ~S~~Tp~ 145 (300)
T PRK11864 78 ASGIEEALKARG----EKGVIVVGWAGDGG-TADIGF-QALSGAAERNHD------ILYIMYDNEAYMNTGIQRSSSTPY 145 (300)
T ss_pred HHHHHHHHHhhC----CCCcEEEEEEccCc-cccccH-HHHHHHHHhCcC------EEEEEECCeeeecCCCCCCCCCcC
Confidence 999999988731 12244555999999 567776 999999 999 9999999999887743222221
Q ss_pred ---------------ccHhHhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 500 ---------------SYCTDVARVVNAPIF-HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 500 ---------------~~~td~Ak~~giP~~-hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
.++..+++++|++.+ +++--|+..+.+++++|++ .+||.||++.+
T Consensus 146 ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~s 206 (300)
T PRK11864 146 GAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLA 206 (300)
T ss_pred CCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 345678999999877 7799999999999999995 68999999874
No 54
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.27 E-value=1.8e-11 Score=137.50 Aligned_cols=180 Identities=19% Similarity=0.145 Sum_probs=124.4
Q ss_pred CCCccccCchhhhHhhHhHhhc-----CCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCC
Q psy8742 415 PSHLEAVDPVVQGKTRAEQFYR-----GDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQ 486 (968)
Q Consensus 415 pShLea~~PvA~G~A~A~q~~~-----~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNq 486 (968)
...||.+.++|+|+|+|.+... .+.+..+.-++|+.|||. ..+|+++||+.+| +|. .+|.||-+|+
T Consensus 110 tGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGe-l~EG~~~EA~~~A~~~~L~-----nLi~i~D~N~ 183 (332)
T PF00456_consen 110 TGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGE-LQEGSVWEAASLAGHYKLD-----NLIVIYDSNG 183 (332)
T ss_dssp -SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHH-HHSHHHHHHHHHHHHTT-T-----TEEEEEEEES
T ss_pred ccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCcc-ccchhhHHHHHHHHHhCCC-----CEEEEEecCC
Confidence 3578999999999999998732 112334578999999999 6899999999999 666 6999999999
Q ss_pred cccccCCCcccccccHhHhhhhcCCcEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCC-CCCCC--C
Q psy8742 487 IGFTTDPRFSRSSSYCTDVARVVNAPIFHV-NSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNE-IDEPM--F 562 (968)
Q Consensus 487 ig~TT~~~~~rss~~~td~Ak~~giP~~hV-DGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne-~Ddp~--y 562 (968)
+.+..++..... ..+.++-++||+.++.| ||+|+++++.|...|.. ..++|++|.+.|-.-+|-+. .+.+. +
T Consensus 184 ~q~dg~~~~~~~-~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG~G~~~~e~~~~~Hg 259 (332)
T PF00456_consen 184 IQIDGPTDIVFS-EDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKGKGVPFMEGTAKWHG 259 (332)
T ss_dssp EETTEEGGGTHH-SHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TTTTSTTTTTSGGGTS
T ss_pred cccCCCcccccc-hHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEecCchhhcccchhhc
Confidence 999887765443 56788889999999999 99999999999998853 33789999999999999843 33332 2
Q ss_pred C--CHHHHHHHHhC-----------CCHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q psy8742 563 T--QPLMYKIIKKT-----------PPALDKYANKLIEEKVVTEEQVKDVKEKYDK 605 (968)
Q Consensus 563 t--~p~~y~~i~~~-----------~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~ 605 (968)
. .+++++..++. .++...|++...+ |--.+++++++.+++++
T Consensus 260 ~~l~~ee~~~~k~~lg~~~~~F~V~~eV~~~f~~~~~~-g~~~~~~W~~~~~~y~~ 314 (332)
T PF00456_consen 260 SPLTEEEVEQAKKELGWDQEPFEVPEEVYDHFRERIAE-GAKAEAEWKELFAAYKK 314 (332)
T ss_dssp S--HHHHHHHHHHHTTSSTSTTCGCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHcCCCCCCcccCHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHH
Confidence 2 23355544421 2455555555533 53333444444444433
No 55
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.20 E-value=8.3e-11 Score=123.02 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=108.7
Q ss_pred eeecCCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCccc
Q psy8742 410 AVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGF 489 (968)
Q Consensus 410 ~i~~NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~ 489 (968)
++.-|...||...+||+|+|+|.|+ ++.+.-+.++.|||- .++|.+|||+..|. +|....+|-||.-|..-.
T Consensus 113 gve~stGSLGqGLsvavGmAlg~kl-----~~~~~~VyvilGDGE-l~EG~~WEAam~Aa--h~~L~NLiaivD~N~~Ql 184 (243)
T COG3959 113 GVEVSTGSLGQGLSVAVGMALGAKL-----KGSPYRVYVILGDGE-LDEGQVWEAAMTAA--HYKLDNLIAIVDRNKLQL 184 (243)
T ss_pred ceeecCCcccccchHHHHHHHHHhh-----cCCCceEEEEecCcc-cccccHHHHHHHHH--HhccCcEEEEEecCCccc
Confidence 3445667899999999999999999 677788999999999 79999999999882 333346888888888877
Q ss_pred ccCCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 490 TTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 490 TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
+-.+++-.+...+.++-++||+.++.|||+|++++++|+..|.. ..++|.+|-+.|-+
T Consensus 185 dG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~---~~~rP~~IIa~Tvk 242 (243)
T COG3959 185 DGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKG---SKGRPTVIIAKTVK 242 (243)
T ss_pred CCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhc---cCCCCeEEEEeccc
Confidence 77777778888899999999999999999999999988877642 23399999998754
No 56
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.12 E-value=5.5e-10 Score=126.70 Aligned_cols=133 Identities=15% Similarity=0.083 Sum_probs=110.4
Q ss_pred CCCCccccCchhhhHhhHhHhhcC--CCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcc
Q psy8742 414 NPSHLEAVDPVVQGKTRAEQFYRG--DGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIG 488 (968)
Q Consensus 414 NpShLea~~PvA~G~A~A~q~~~~--~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig 488 (968)
....||.+.++|+|+|+|.++... ...+.+.-++|+.|||. ..+|.+||++++| +|. .+|.||.+|++.
T Consensus 116 sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGE-l~EG~vwEA~~~Ag~~kL~-----NLivIvD~N~~q 189 (386)
T cd02017 116 PTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGE-MDEPESLGAIGLAAREKLD-----NLIFVVNCNLQR 189 (386)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccc-cccHHHHHHHHHHHHhCCC-----CEEEEEECCCCc
Confidence 446789999999999999997321 11234566899999999 6899999999999 554 599999999999
Q ss_pred cccCCCcc-cccccHhHhhhhcCCcEEEEe--------------------------------------------------
Q psy8742 489 FTTDPRFS-RSSSYCTDVARVVNAPIFHVN-------------------------------------------------- 517 (968)
Q Consensus 489 ~TT~~~~~-rss~~~td~Ak~~giP~~hVD-------------------------------------------------- 517 (968)
+..++... .....+.++-++||+.++.||
T Consensus 190 idG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~ 269 (386)
T cd02017 190 LDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPE 269 (386)
T ss_pred cCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHH
Confidence 98887763 244678999999999999998
Q ss_pred -------------------CCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCC
Q psy8742 518 -------------------SDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHN 555 (968)
Q Consensus 518 -------------------GnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHn 555 (968)
|+|+++++.|+..|.+ .-++|++|.+.|-.-+|-.
T Consensus 270 ~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~---~~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 270 LKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVE---HKGKPTVILAKTIKGYGLG 323 (386)
T ss_pred HHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHh---CCCCCeEEEEeCeecCCCC
Confidence 9999999999988764 2358999999999988875
No 57
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.10 E-value=1.7e-10 Score=116.03 Aligned_cols=110 Identities=19% Similarity=0.110 Sum_probs=84.8
Q ss_pred CCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCccccc
Q psy8742 415 PSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTT 491 (968)
Q Consensus 415 pShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT 491 (968)
-+.+|...|.|+|+++|.+. ..++++.|||+| .. ..++|+.+ ++| +++||.||+....+
T Consensus 45 ~g~~G~~~~~a~Gaa~a~~~---------~~vv~~~GDG~~-~~--~~~~l~ta~~~~~~------~~~iv~nN~~~~~~ 106 (168)
T cd00568 45 FGAMGYGLPAAIGAALAAPD---------RPVVCIAGDGGF-MM--TGQELATAVRYGLP------VIVVVFNNGGYGTI 106 (168)
T ss_pred chhhhhhHHHHHHHHHhCCC---------CcEEEEEcCcHH-hc--cHHHHHHHHHcCCC------cEEEEEECCccHHH
Confidence 36788999999999998753 368999999996 34 44777777 899 99999999976665
Q ss_pred CCC-----------cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 492 DPR-----------FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 492 ~~~-----------~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
... ......+...+|+++|+++++|++ ++++.++.++|. +.++|+|||+.|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~a~~~a~----~~~~p~~i~v~~ 168 (168)
T cd00568 107 RMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEAALAEAL----AAGGPALIEVKT 168 (168)
T ss_pred HHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCCEEEEEEC
Confidence 422 222335678899999999999985 776666666654 678999999975
No 58
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.09 E-value=3.1e-07 Score=112.81 Aligned_cols=132 Identities=12% Similarity=0.043 Sum_probs=109.7
Q ss_pred CCCccccCchhhhHhhHhHhhcC--CCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCccc
Q psy8742 415 PSHLEAVDPVVQGKTRAEQFYRG--DGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGF 489 (968)
Q Consensus 415 pShLea~~PvA~G~A~A~q~~~~--~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~ 489 (968)
...||.+.++|+|.|++.++... ..+..+.-++|+.|||- ..||.++|++.+| +|. .+|+||.+|.+.+
T Consensus 188 TGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGE-ldEG~swEA~~~Aa~~kLd-----NLi~IVD~N~~ql 261 (885)
T TIGR00759 188 TVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGE-MDEPESKGAITFAAREKLD-----NLTFVINCNLQRL 261 (885)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchh-hccHHHHHHHHHHHHhCCC-----CEEEEEeCCCCcc
Confidence 35678999999999999997322 12345567999999999 7999999999999 665 5999999999999
Q ss_pred ccCCCcccc-cccHhHhhhhcCCcEEEE----------------------------------------------------
Q psy8742 490 TTDPRFSRS-SSYCTDVARVVNAPIFHV---------------------------------------------------- 516 (968)
Q Consensus 490 TT~~~~~rs-s~~~td~Ak~~giP~~hV---------------------------------------------------- 516 (968)
..+....-. ...+.++-+++|+.++.|
T Consensus 262 DG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l 341 (885)
T TIGR00759 262 DGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPEL 341 (885)
T ss_pred CCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHH
Confidence 888765333 356888999999999999
Q ss_pred -----------------eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCC
Q psy8742 517 -----------------NSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHN 555 (968)
Q Consensus 517 -----------------DGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHn 555 (968)
||+|+++|++|...|.+. -++|++|-+.|-.-+|-.
T Consensus 342 ~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~---~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 342 KALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH---KGQPTVILAKTIKGYGMG 394 (885)
T ss_pred HHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC---CCCCEEEEEeeeecCCCC
Confidence 699999999999988752 347999999999888876
No 59
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.03 E-value=8e-10 Score=113.11 Aligned_cols=110 Identities=17% Similarity=0.159 Sum_probs=84.0
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|.|+|+++|.+. ..+|++.|||+| ..+. .|-...+ ++| +++||.||+ ||+++.
T Consensus 49 g~mG~~lp~aiGaala~~~---------~~vv~i~GDG~f-~~~~-~el~ta~~~~~p------~~~iV~nN~~~~~~~~ 111 (178)
T cd02002 49 GGLGWGLPAAVGAALANPD---------RKVVAIIGDGSF-MYTI-QALWTAARYGLP------VTVVILNNRGYGALRS 111 (178)
T ss_pred ccccchHHHHHHHHhcCCC---------CeEEEEEcCchh-hccH-HHHHHHHHhCCC------eEEEEEcCccHHHHHH
Confidence 6678899999999998643 469999999997 4553 4444433 899 999999997 887642
Q ss_pred CCc-----------------ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 493 PRF-----------------SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 493 ~~~-----------------~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
... .....+..++|++||+++++|++ ++++..+.++|++ .++|+|||+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 112 FLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred HHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 110 01225678999999999999987 8888888888874 57899999863
No 60
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=98.98 E-value=2.1e-09 Score=109.76 Aligned_cols=109 Identities=19% Similarity=0.104 Sum_probs=80.7
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcC-Cccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNN-QIGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNN-qig~TT 491 (968)
+.+|...|.|+|+++|... ..++|+.|||+|. .. . +.|..+ +|| +++||.|| +||+..
T Consensus 48 g~mG~~lp~AiGa~la~~~---------~~vv~i~GDG~f~-~~-~-~el~ta~~~~lp------v~ivv~NN~~~~~~~ 109 (172)
T cd02004 48 GTLGVGLGYAIAAALARPD---------KRVVLVEGDGAFG-FS-G-MELETAVRYNLP------IVVVVGNNGGWYQGL 109 (172)
T ss_pred CcccchHHHHHHHHHhCCC---------CeEEEEEcchhhc-CC-H-HHHHHHHHcCCC------EEEEEEECcccccch
Confidence 4467788999999888643 3589999999973 22 2 335554 999 99999887 488865
Q ss_pred CCCcc-----------cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 492 DPRFS-----------RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 492 ~~~~~-----------rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
..... ....+...+|++||+++++|+ +++++..+.++|.+ .++|+|||+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 171 (172)
T cd02004 110 DGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALA----SGKPALINVII 171 (172)
T ss_pred hhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH----cCCCEEEEEEc
Confidence 32221 123567899999999999998 58888777777764 47899999975
No 61
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=98.91 E-value=1.1e-08 Score=105.86 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=83.4
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCcccc-CcchHHHHHHhCCCCCCCcccEEEE-EEcCCcccccCC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFC-GQGVVFETFHLSDLPDYTTHGTIHI-VVNNQIGFTTDP 493 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfs-gQGvv~EaLNlA~LP~y~~gGvIfV-VeNNqig~TT~~ 493 (968)
+.+|...|.|+|+++|.. ..+||+.|||+|. +.+.++.+.++..+| +++| +.||.||+....
T Consensus 42 g~mG~~lp~AiGaala~~----------~~vv~i~GDG~f~m~~~el~ta~~~~~~~------l~vvV~NN~~~~~~~~~ 105 (179)
T cd03372 42 GSMGLASSIGLGLALAQP----------RKVIVIDGDGSLLMNLGALATIAAEKPKN------LIIVVLDNGAYGSTGNQ 105 (179)
T ss_pred cchhhHHHHHHHHHhcCC----------CcEEEEECCcHHHhCHHHHHHHHHcCCCC------EEEEEEcCccccccCCC
Confidence 456788899999999853 2589999999962 456677766665455 5555 566677876532
Q ss_pred Cccc-ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 494 RFSR-SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 494 ~~~r-ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
.... ...+...+|++||++.+.|+| +++++..+.++|. ++|+|||+.+-+
T Consensus 106 ~~~~~~~~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~ 156 (179)
T cd03372 106 PTHAGKKTDLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKP 156 (179)
T ss_pred CCCCCCCCCHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcC
Confidence 2111 245688999999999999998 8998888877775 689999999954
No 62
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=98.88 E-value=3.3e-09 Score=110.94 Aligned_cols=116 Identities=22% Similarity=0.237 Sum_probs=87.7
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcC-CcccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNN-QIGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNN-qig~TT~ 492 (968)
+.+|...|.|+|+++|... .-+||+.|||+| +=...|-.+.+ +|| +|+||.|| .||+...
T Consensus 53 g~mG~~lpaaiGa~la~p~---------r~vv~i~GDG~f--~m~~~eL~Ta~~~~lp------vi~vV~NN~~yg~~~~ 115 (196)
T cd02013 53 GNCGYALPAIIGAKAAAPD---------RPVVAIAGDGAW--GMSMMEIMTAVRHKLP------VTAVVFRNRQWGAEKK 115 (196)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcchHH--hccHHHHHHHHHhCCC------eEEEEEECchhHHHHH
Confidence 3467788999999888543 358999999997 44577877766 899 99988666 5676431
Q ss_pred CCc----------ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecC
Q psy8742 493 PRF----------SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRR 551 (968)
Q Consensus 493 ~~~----------~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~ 551 (968)
... .....+...+|++||++.++|+ +++++..+.++|++.++. ++|+|||+.+.+.
T Consensus 116 ~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~~p~liev~v~~~ 181 (196)
T cd02013 116 NQVDFYNNRFVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQE 181 (196)
T ss_pred HHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCC-CCeEEEEEEeCcc
Confidence 000 1123577899999999999998 599999999999876554 7899999998653
No 63
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=98.87 E-value=7e-09 Score=106.73 Aligned_cols=112 Identities=22% Similarity=0.234 Sum_probs=82.0
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|.|+|+++|... ..+|++.|||+| ..+ +.|-.+++ ++| +++||.||+ ||+.+.
T Consensus 51 g~mG~~~~~aiGa~~a~~~---------~~vv~i~GDG~f-~~~-~~el~t~~~~~lp------~~~iv~NN~~~~~~~~ 113 (178)
T cd02014 51 ATMGNGLPGAIAAKLAYPD---------RQVIALSGDGGF-AML-MGDLITAVKYNLP------VIVVVFNNSDLGFIKW 113 (178)
T ss_pred chhhhHHHHHHHHHHhCCC---------CcEEEEEcchHH-Hhh-HHHHHHHHHhCCC------cEEEEEECCchhHHHH
Confidence 3456778899998887533 468999999996 345 78866655 899 999999996 776321
Q ss_pred C---------CcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 493 P---------RFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 493 ~---------~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
. .-.....++..+|++||++.+.|+ +++++..+.++|+ +.++|+|||+.+-+
T Consensus 114 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~----~~~~p~liev~~~~ 174 (178)
T cd02014 114 EQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEAL----AADGPVVIDVVTDP 174 (178)
T ss_pred HHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 0 000123467889999999999987 6777766666654 45799999999853
No 64
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=98.85 E-value=1.1e-08 Score=105.87 Aligned_cols=112 Identities=20% Similarity=0.202 Sum_probs=80.1
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCCc-ccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQI-GFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNqi-g~TT~ 492 (968)
+.+|...|.|+|+++|.+. ..+|++.|||+| +-.+.|-...+ +|| +++||.||+. ++...
T Consensus 50 g~mG~~lp~aiGa~la~~~---------~~vv~i~GDG~f--~~~~~eL~ta~~~~lp------i~ivV~nN~~~~~~~~ 112 (186)
T cd02015 50 GTMGFGLPAAIGAKVARPD---------KTVICIDGDGSF--QMNIQELATAAQYNLP------VKIVILNNGSLGMVRQ 112 (186)
T ss_pred cchhchHHHHHHHHHhCCC---------CeEEEEEcccHH--hccHHHHHHHHHhCCC------eEEEEEECCccHHHHH
Confidence 4567888999999988643 358899999997 45566633333 899 9999999984 43210
Q ss_pred ------CC-----cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 493 ------PR-----FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 493 ------~~-----~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
.. ......+.+.+|+++|+++++|++ ++++.++.+.|. +.++|+|||+.|-+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~liev~~~~ 175 (186)
T cd02015 113 WQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVEK--PEELEAALKEAL----ASDGPVLLDVLVDP 175 (186)
T ss_pred HHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEeCC--HHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 00 111235678999999999999986 666655555554 56889999999854
No 65
>PRK07524 hypothetical protein; Provisional
Probab=98.78 E-value=1.5e-08 Score=121.03 Aligned_cols=115 Identities=19% Similarity=0.092 Sum_probs=88.6
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcC-Cccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNN-QIGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNN-qig~TT- 491 (968)
+.+|...|.|+|+++|... ..+|++.|||+| +..+.|-...+ +|| +++||.|| .||+..
T Consensus 407 g~mG~~lp~aiGa~lA~p~---------~~vv~i~GDG~f--~~~~~el~ta~~~~lp------i~~vV~NN~~~g~i~~ 469 (535)
T PRK07524 407 GTLGYGLPAAIGAALGAPE---------RPVVCLVGDGGL--QFTLPELASAVEADLP------LIVLLWNNDGYGEIRR 469 (535)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchHH--hhhHHHHHHHHHhCCC------eEEEEEECCchHHHHH
Confidence 4567778999999998533 359999999998 56677744344 899 99999999 677531
Q ss_pred --------CCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCC
Q psy8742 492 --------DPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNG 553 (968)
Q Consensus 492 --------~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~G 553 (968)
+.......++...+|++||++++.|+ +++++..+.++|++ .++|+|||+.++|+.|
T Consensus 470 ~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~~ 533 (535)
T PRK07524 470 YMVARDIEPVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFA----RPGPTLIEVDQACWFA 533 (535)
T ss_pred HHHHhcCCccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCcccc
Confidence 11111234567899999999999996 89888888888764 5889999999999986
No 66
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=98.73 E-value=2.2e-08 Score=105.14 Aligned_cols=115 Identities=23% Similarity=0.278 Sum_probs=85.4
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|.|+|+++|... .-+||+.|||+| +=...|-...+ +|| +++||.||+ ||+...
T Consensus 57 GsmG~~lpaaiGa~la~p~---------~~vv~i~GDG~f--~m~~~eL~Ta~~~~lp------viivV~NN~~yg~~~~ 119 (202)
T cd02006 57 GPLGWTVPAALGVAAADPD---------RQVVALSGDYDF--QFMIEELAVGAQHRIP------YIHVLVNNAYLGLIRQ 119 (202)
T ss_pred cchhhhhHHHHhHHhhCCC---------CeEEEEEeChHh--hccHHHHHHHHHhCCC------eEEEEEeCchHHHHHH
Confidence 3467778999999988643 348999999998 55555554444 999 999999997 565221
Q ss_pred CC------------ccc--------ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 493 PR------------FSR--------SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 493 ~~------------~~r--------ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
.. ... ...+.+.+|++||+++++|+ +++++..+.++|++..++.++|+|||+.+=
T Consensus 120 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~ 194 (202)
T cd02006 120 AQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILE 194 (202)
T ss_pred HHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEec
Confidence 00 000 12567889999999999996 789999999999876555578999999873
No 67
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=98.70 E-value=5.2e-08 Score=117.36 Aligned_cols=115 Identities=19% Similarity=0.126 Sum_probs=87.7
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcC-Cccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNN-QIGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNN-qig~TT 491 (968)
+.+|...|.|+|+++|... ..+|++.|||+| ..+...+.|+.+ +|| +++||.|| +||+..
T Consensus 430 gsmG~~lp~aiGa~la~p~---------~~vv~i~GDG~f-~~~~~e~~l~ta~~~~l~------~~ivv~NN~~yg~~~ 493 (569)
T PRK08327 430 GGLGWALGAALGAKLATPD---------RLVIATVGDGSF-IFGVPEAAHWVAERYGLP------VLVVVFNNGGWLAVK 493 (569)
T ss_pred CCCCcchHHHHHHhhcCCC---------CeEEEEecCcce-eecCcHHHHHHHHHhCCC------EEEEEEeCcccccch
Confidence 4567778888888877432 469999999996 455443456554 999 99999999 677631
Q ss_pred C----------------C-Cccc-ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 492 D----------------P-RFSR-SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 492 ~----------------~-~~~r-ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
. . .... ...+...+|++||+++++|+ +++++..+++.|++.+++++||+|||+.+
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 494 EAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred hHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0 0 0011 23567889999999999997 99999999999999888888999999975
No 68
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=98.69 E-value=7.6e-08 Score=99.78 Aligned_cols=112 Identities=21% Similarity=0.148 Sum_probs=81.9
Q ss_pred CccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcC-CcccccCC
Q psy8742 417 HLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNN-QIGFTTDP 493 (968)
Q Consensus 417 hLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNN-qig~TT~~ 493 (968)
-+|...|.|+|++.|... ..+|++.|||+| +..++|..+.+ ++| +++||.|| .|++....
T Consensus 51 ~mG~~l~~aiGaala~~~---------~~vv~i~GDG~f--~~~~~el~ta~~~~~p------~~ivV~nN~~~~~~~~~ 113 (183)
T cd02005 51 SIGYSVPAALGAALAAPD---------RRVILLVGDGSF--QMTVQELSTMIRYGLN------PIIFLINNDGYTIERAI 113 (183)
T ss_pred hHhhhHHHHHHHHHhCCC---------CeEEEEECCchh--hccHHHHHHHHHhCCC------CEEEEEECCCcEEEEEe
Confidence 356677888888887543 469999999998 77889988776 788 66555555 56764311
Q ss_pred Ccc------cccccHhHhhhhcC----CcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 494 RFS------RSSSYCTDVARVVN----APIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 494 ~~~------rss~~~td~Ak~~g----iP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
... ....+...+|++|| +++++|+ ++++...|.++|++ ..++|+|||+.+.|
T Consensus 114 ~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 114 HGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred ccCCcCcccCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 111 11246788999999 7888885 79999888888886 25789999999854
No 69
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.65 E-value=6.8e-08 Score=116.43 Aligned_cols=111 Identities=20% Similarity=0.217 Sum_probs=86.5
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|.|+|+++|... ..+|++.|||+| +..++|-.++. +|| +|+||.||+ |++...
T Consensus 422 gsmG~~lp~aiGa~lA~p~---------~~vv~i~GDG~f--~~~~~el~Ta~~~~lp------i~~vV~NN~~~~~~~~ 484 (570)
T PRK06725 422 GTMGFGFPAAIGAQLAKEE---------ELVICIAGDASF--QMNIQELQTIAENNIP------VKVFIINNKFLGMVRQ 484 (570)
T ss_pred ccccchhhHHHhhHhhcCC---------CeEEEEEecchh--hccHHHHHHHHHhCCC------eEEEEEECCccHHHHH
Confidence 5678899999999988543 358999999998 67788888777 999 999999997 554321
Q ss_pred ---------CC-cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 493 ---------PR-FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 493 ---------~~-~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
.. ......+.+.+|++||+++++|+ +++++..+.+.|++ .++|+|||+.+=
T Consensus 485 ~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~id 545 (570)
T PRK06725 485 WQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA----HEGPVVVDFCVE 545 (570)
T ss_pred HHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 00 01113567899999999999994 89988777777764 478999999983
No 70
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=98.63 E-value=1.5e-07 Score=98.12 Aligned_cols=113 Identities=14% Similarity=0.074 Sum_probs=79.0
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CC-CCCCcccEEEEEEcCC-ccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DL-PDYTTHGTIHIVVNNQ-IGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~L-P~y~~gGvIfVVeNNq-ig~TT 491 (968)
+.+|...|.|+|+++|... .-+|++.|||+|. =...|-...+ ++ | +++||.||+ ||+..
T Consensus 48 g~mG~~lpaAiGaala~p~---------~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~------i~ivV~NN~~yg~~~ 110 (188)
T cd03371 48 GSMGHASQIALGIALARPD---------RKVVCIDGDGAAL--MHMGGLATIGGLAPAN------LIHIVLNNGAHDSVG 110 (188)
T ss_pred CccccHHHHHHHHHHhCCC---------CcEEEEeCCcHHH--hhccHHHHHHHcCCCC------cEEEEEeCchhhccC
Confidence 5577888999999988643 2478999999972 2223333333 55 6 888888886 45532
Q ss_pred CCCcccccccHhHhhhhcCCcE-EEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecC
Q psy8742 492 DPRFSRSSSYCTDVARVVNAPI-FHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRR 551 (968)
Q Consensus 492 ~~~~~rss~~~td~Ak~~giP~-~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~ 551 (968)
.........+.+.+|++||++. ..|+ +++++.++.++|++ .++|+|||+.+=+-
T Consensus 111 ~~~~~~~~~d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~~ 165 (188)
T cd03371 111 GQPTVSFDVSLPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRPG 165 (188)
T ss_pred CcCCCCCCCCHHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecCC
Confidence 1111112357889999999997 5887 89999888888864 47899999999443
No 71
>PRK06163 hypothetical protein; Provisional
Probab=98.63 E-value=2.4e-07 Score=97.86 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=80.4
Q ss_pred CccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcC-CcccccC
Q psy8742 417 HLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNN-QIGFTTD 492 (968)
Q Consensus 417 hLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNN-qig~TT~ 492 (968)
.+|...|.|+|+++|... .-+||+.|||+| +=...|-..++ ++| +++||.|| .||+.-.
T Consensus 58 sMG~glpaAiGaalA~p~---------r~Vv~i~GDG~f--~m~~~eL~Ta~~~~~lp------i~ivV~NN~~yg~~~~ 120 (202)
T PRK06163 58 SMGLAFPIALGVALAQPK---------RRVIALEGDGSL--LMQLGALGTIAALAPKN------LTIIVMDNGVYQITGG 120 (202)
T ss_pred ccccHHHHHHHHHHhCCC---------CeEEEEEcchHH--HHHHHHHHHHHHhcCCC------eEEEEEcCCchhhcCC
Confidence 467888999999998643 237999999997 33334444443 578 99999999 5776321
Q ss_pred CCc-ccccccHhHhhhhcCCc-EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 493 PRF-SRSSSYCTDVARVVNAP-IFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 493 ~~~-~rss~~~td~Ak~~giP-~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
... .....+...+|+++|++ .++|. +++++..+.++|++ .++|+|||+.+-+
T Consensus 121 ~~~~~~~~~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 174 (202)
T PRK06163 121 QPTLTSQTVDVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRIDD 174 (202)
T ss_pred ccCCCCCCCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 111 11235678999999998 67886 88899888888874 4789999998853
No 72
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=98.61 E-value=2.1e-07 Score=94.29 Aligned_cols=109 Identities=14% Similarity=0.049 Sum_probs=79.1
Q ss_pred CccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCcccc-CcchHHHHHHhC-CCCCCCcccEEEEEEcCC-cccccCC
Q psy8742 417 HLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFC-GQGVVFETFHLS-DLPDYTTHGTIHIVVNNQ-IGFTTDP 493 (968)
Q Consensus 417 hLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfs-gQGvv~EaLNlA-~LP~y~~gGvIfVVeNNq-ig~TT~~ 493 (968)
.+|...|.|+|+++|.+ .-+||+.|||+|. +-|.. +|+--- ++| +++||.||+ ||++-..
T Consensus 43 smG~~lp~AiGa~~a~~----------~~Vv~i~GDG~f~m~~~el-~t~~~~~~~~------i~~vV~nN~~~g~~~~~ 105 (157)
T cd02001 43 SMGLAGSIGLGLALGLS----------RKVIVVDGDGSLLMNPGVL-LTAGEFTPLN------LILVVLDNRAYGSTGGQ 105 (157)
T ss_pred chhhHHHHHHHHHhcCC----------CcEEEEECchHHHhcccHH-HHHHHhcCCC------EEEEEEeCccccccCCc
Confidence 45777899999998853 2479999999982 22332 333222 489 999997776 5654311
Q ss_pred CcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 494 RFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 494 ~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
....+..+.+.+|++||++.++|+ +++++..+.++|++ .++|+|||+.+
T Consensus 106 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i 154 (157)
T cd02001 106 PTPSSNVNLEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPI 154 (157)
T ss_pred CCCCCCCCHHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 111124678999999999999985 79999999999885 46899999987
No 73
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=98.61 E-value=1.9e-07 Score=96.25 Aligned_cols=113 Identities=15% Similarity=0.139 Sum_probs=82.8
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|.|+|+++|... .-+|++.|||+|.-.| +.|-...+ ++| +++||.||+ ||++-.
T Consensus 51 g~mG~gl~~AiGa~la~p~---------~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~------i~vvV~nN~~~g~~~~ 114 (178)
T cd02008 51 TCMGASIGVAIGMAKASED---------KKVVAVIGDSTFFHSG-ILGLINAVYNKAN------ITVVILDNRTTAMTGG 114 (178)
T ss_pred ccCccHHHHHhhHHhhCCC---------CCEEEEecChHHhhcc-HHHHHHHHHcCCC------EEEEEECCcceeccCC
Confidence 5678888999999998753 2378999999973223 45555544 899 888888886 344321
Q ss_pred CCc--------c-cccccHhHhhhhcCCcEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 493 PRF--------S-RSSSYCTDVARVVNAPIFHV-NSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 493 ~~~--------~-rss~~~td~Ak~~giP~~hV-DGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
... . ....+...+|++||++.++| |++|.+++.+++++|++ .++|+||++.+
T Consensus 115 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 115 QPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred CCCCCCcccccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 100 0 01256789999999999999 89999998888888873 47899999864
No 74
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=98.60 E-value=4.1e-08 Score=98.31 Aligned_cols=110 Identities=20% Similarity=0.171 Sum_probs=82.9
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCCc-ccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQI-GFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNqi-g~TT~ 492 (968)
+.+|...|.|+|+++|... .-+|++.|||+|. -...|-.+.+ ++| +++||.||+. |++-.
T Consensus 28 g~mG~~~~~aiGa~~a~p~---------~~vv~i~GDG~f~--~~~~el~ta~~~~~~------v~~vv~nN~~~~~~~~ 90 (153)
T PF02775_consen 28 GSMGYALPAAIGAALARPD---------RPVVAITGDGSFL--MSLQELATAVRYGLP------VVIVVLNNGGYGMTGG 90 (153)
T ss_dssp T-TTTHHHHHHHHHHHSTT---------SEEEEEEEHHHHH--HHGGGHHHHHHTTSS------EEEEEEESSBSHHHHH
T ss_pred cccCCHHHhhhHHHhhcCc---------ceeEEecCCccee--eccchhHHHhhccce------EEEEEEeCCcceEecc
Confidence 5678888999999998433 4699999999973 2355555555 899 9999999864 43221
Q ss_pred ----CCc---------ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy8742 493 ----PRF---------SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 493 ----~~~---------~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel 546 (968)
... .....+...+|+++|+++++|+-.|++++.++.++|+ +.++|+|||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV 153 (153)
T PF02775_consen 91 QQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV 153 (153)
T ss_dssp HHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred ccccCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence 111 0233568899999999999999888999999999988 6789999996
No 75
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=98.57 E-value=1.8e-07 Score=96.51 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=80.4
Q ss_pred CccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC-
Q psy8742 417 HLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD- 492 (968)
Q Consensus 417 hLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~- 492 (968)
-+|...|.|+|++.|... .-+|++.|||+| +=...|-...+ +|| +|+||.||+ ||+...
T Consensus 49 ~mG~~lp~aiGa~la~~~---------~~vv~i~GDG~f--~m~~~eL~ta~~~~l~------vi~vV~NN~~~g~~~~~ 111 (177)
T cd02010 49 TMGVALPGAIGAKLVYPD---------RKVVAVSGDGGF--MMNSQELETAVRLKIP------LVVLIWNDNGYGLIKWK 111 (177)
T ss_pred hhhhHHHHHHHHHHhCCC---------CcEEEEEcchHH--HhHHHHHHHHHHHCCC------eEEEEEECCcchHHHHH
Confidence 357778999999988543 358899999997 33334544444 899 888888875 676421
Q ss_pred --------CCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 493 --------PRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 493 --------~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
........+...+|++||+++++|+ +++++..+.++|++ .++|+|||+.+-+
T Consensus 112 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 112 QEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred HHHhcCCcccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 0000012467789999999999996 89999888888874 4789999999843
No 76
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=98.56 E-value=1.2e-07 Score=99.98 Aligned_cols=112 Identities=19% Similarity=0.131 Sum_probs=79.5
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|.|+|+++|... .-+|++.|||+|. - ...|-...+ +|| +++||.||+ ||+.-.
T Consensus 48 gsmG~~lpaAiGa~la~p~---------~~vv~i~GDGsf~-m-~~~eL~Ta~~~~lp------v~ivV~NN~~~g~~~~ 110 (205)
T cd02003 48 SCMGYEIAAGLGAKLAKPD---------REVYVLVGDGSYL-M-LHSEIVTAVQEGLK------IIIVLFDNHGFGCINN 110 (205)
T ss_pred chhhhHHHHHHHHHHhCCC---------CeEEEEEccchhh-c-cHHHHHHHHHcCCC------CEEEEEECCccHHHHH
Confidence 3457777888888887543 3488999999973 2 334544444 899 888877775 564210
Q ss_pred -------CCc-----c-----------cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 493 -------PRF-----S-----------RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 493 -------~~~-----~-----------rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
... . -...+...+|++||++.++|+ +++++..|.++|+ +.++|+|||+.+=
T Consensus 111 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIeV~v~ 184 (205)
T cd02003 111 LQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAK----ASDRTTVIVIKTD 184 (205)
T ss_pred HHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEee
Confidence 000 0 113567889999999999995 8999988888886 4578999999984
Q ss_pred c
Q psy8742 550 R 550 (968)
Q Consensus 550 R 550 (968)
+
T Consensus 185 ~ 185 (205)
T cd02003 185 P 185 (205)
T ss_pred c
Confidence 3
No 77
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=98.51 E-value=4.1e-07 Score=94.40 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=75.4
Q ss_pred CccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--C-CCCCCcccEEEEEEcCC-cccccC
Q psy8742 417 HLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--D-LPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 417 hLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~-LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
.+|...|.|+|+++|. . .-+||+.|||+|. -+ ..|-..++ + +| +++||.||+ ||+.-.
T Consensus 43 smG~~lpaAiGa~la~-~---------~~Vv~i~GDG~f~-m~-~~el~ta~~~~~~p------v~~vV~NN~~yg~~~~ 104 (181)
T TIGR03846 43 SMGLASSIGLGLALAT-D---------RTVIVIDGDGSLL-MN-LGVLPTIAAESPKN------LILVILDNGAYGSTGN 104 (181)
T ss_pred ccccHHHHHHHHHHcC-C---------CcEEEEEcchHHH-hh-hhHHHHHHHhCCCC------eEEEEEeCCccccccC
Confidence 3456679999999986 3 2489999999973 22 23433333 6 58 999998887 666431
Q ss_pred CCccc-ccccHhHhhhhcCCcEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 493 PRFSR-SSSYCTDVARVVNAPIFH-VNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 493 ~~~~r-ss~~~td~Ak~~giP~~h-VDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
..... ...+.+.+|++||++..+ | .+++++..+.+ |+ +.++|+|||+.+-
T Consensus 105 q~~~~~~~~d~~~lA~a~G~~~~~~v--~~~~~l~~al~-a~----~~~~p~li~v~~~ 156 (181)
T TIGR03846 105 QPTPASRRTDLELVAKAAGIRNVEKV--ADEEELRDALK-AL----AMKGPTFIHVKVK 156 (181)
T ss_pred cCCCCCCCCCHHHHHHHCCCCeEEEe--CCHHHHHHHHH-HH----cCCCCEEEEEEeC
Confidence 11111 135678999999999998 6 47888877775 54 4578999999884
No 78
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=98.48 E-value=3.3e-07 Score=109.49 Aligned_cols=109 Identities=18% Similarity=0.169 Sum_probs=81.5
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCC-ccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQ-IGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNq-ig~TT 491 (968)
+.+|...|.|+|+++|... ..+||+.|||+| ..+. +.|+.+ +|| +++||.||+ ||+..
T Consensus 407 g~mG~~lp~aiGa~la~p~---------~~vv~i~GDG~f-~~~~--~eL~ta~~~~lp------~~~vv~NN~~~~~~~ 468 (530)
T PRK07092 407 GGLGYGLPAAVGVALAQPG---------RRVIGLIGDGSA-MYSI--QALWSAAQLKLP------VTFVILNNGRYGALR 468 (530)
T ss_pred CcccchHHHHHHHHHhCCC---------CeEEEEEeCchH-hhhH--HHHHHHHHhCCC------cEEEEEeChHHHHHH
Confidence 5688999999999998543 358999999997 3442 456555 899 999999999 88632
Q ss_pred C----------CCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 492 D----------PRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 492 ~----------~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
. ........+...+|++||+++++|+ +++++..|.++|. +.++|+|||+.+
T Consensus 469 ~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~----~~~~p~liev~~ 529 (530)
T PRK07092 469 WFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARAL----AADGPVLVEVEV 529 (530)
T ss_pred HHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEc
Confidence 1 1111123567899999999999998 5777766666665 568999999975
No 79
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=98.46 E-value=5.4e-07 Score=108.88 Aligned_cols=110 Identities=22% Similarity=0.310 Sum_probs=83.5
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCCc-cccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQI-GFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNqi-g~TT- 491 (968)
+.+|...|.|+|+++|... .-+||+.|||+| +=...|-...+ +|| +++||.||+. |+..
T Consensus 408 gsmG~~~paAiGa~la~p~---------~~vv~i~GDGsf--~~~~~el~Ta~~~~lp------v~~vV~NN~~~g~i~~ 470 (578)
T PRK06546 408 GSMANALPHAIGAQLADPG---------RQVISMSGDGGL--SMLLGELLTVKLYDLP------VKVVVFNNSTLGMVKL 470 (578)
T ss_pred ccccchhHHHHHHHHhCCC---------CcEEEEEcCchH--hhhHHHHHHHHHhCCC------eEEEEEECCccccHHH
Confidence 4567888999999998643 359999999998 34556655444 899 9999999974 6531
Q ss_pred -----C-CCcc--cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 492 -----D-PRFS--RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 492 -----~-~~~~--rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
. .... ....+...+|++||++.++|+ +++++..+.++|++ .++|+|||+.+
T Consensus 471 ~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~ 529 (578)
T PRK06546 471 EMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVT 529 (578)
T ss_pred HHHhcCCCcccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 0 1111 123567899999999999997 89999888888874 57899999987
No 80
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=98.46 E-value=4e-07 Score=93.63 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=79.5
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|.++|+++|. . .-+|++.|||+| +=...|-.+.+ ++| +++||.||+ ||+.-.
T Consensus 51 g~mG~~l~~aiGa~la~-~---------~~Vv~i~GDGsf--~m~~~eL~ta~~~~l~------v~ivVlNN~~~g~~~~ 112 (175)
T cd02009 51 SGIDGTLSTALGIALAT-D---------KPTVLLTGDLSF--LHDLNGLLLGKQEPLN------LTIVVINNNGGGIFSL 112 (175)
T ss_pred cchhhHHHHHHHHHhcC-C---------CCEEEEEehHHH--HHhHHHHHhccccCCC------eEEEEEECCCCchhee
Confidence 34567789999999885 3 238899999997 44456655655 799 888888887 553211
Q ss_pred -CC--------ccc---ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 493 -PR--------FSR---SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 493 -~~--------~~r---ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
.. ... ...+...+|++||+++++|+ +++++..+.++|++ .++|+|||+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 113 LPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred ccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 00 000 13467889999999999997 79998888888864 57899999975
No 81
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=98.44 E-value=1e-06 Score=92.26 Aligned_cols=112 Identities=18% Similarity=0.129 Sum_probs=81.1
Q ss_pred CccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccCC
Q psy8742 417 HLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTDP 493 (968)
Q Consensus 417 hLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~~ 493 (968)
.+|...|.|+|+++|... .-+|++.|||+|. +=.+.|-.+.. ++| +++||.||+ ||.+...
T Consensus 52 ~mG~glpaAiGa~la~p~---------r~Vv~i~GDGs~f-~m~~~eL~ta~~~~lp------v~iiVlnN~~yg~~~~~ 115 (193)
T cd03375 52 LHGRALAVATGVKLANPD---------LTVIVVSGDGDLA-AIGGNHFIHAARRNID------ITVIVHNNQIYGLTKGQ 115 (193)
T ss_pred hhccHHHHHHHHHHhCCC---------CeEEEEeccchHh-hccHHHHHHHHHhCCC------eEEEEEcCcccccCCCc
Confidence 457788999999888543 3589999999941 33356666555 899 999999986 4665311
Q ss_pred Cc-c---------------cccccHhHhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 494 RF-S---------------RSSSYCTDVARVVNAPIF-HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 494 ~~-~---------------rss~~~td~Ak~~giP~~-hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
.. . ....+...+|+++|++.+ ++.-.+++++..+.++|++ .++|+|||+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~ 183 (193)
T cd03375 116 ASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLS 183 (193)
T ss_pred cCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEEC
Confidence 10 0 012467889999999986 3455789999999999885 47899999974
No 82
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=98.43 E-value=6.5e-07 Score=96.70 Aligned_cols=119 Identities=13% Similarity=0.022 Sum_probs=80.9
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
..+|..+|.|+|++.|+-.. ...+.-+|++.|||+|..-| +.|.++.. ++| +++||.||+ ||++-.
T Consensus 64 g~mG~GlpaAiGA~~a~~~~----~~p~~~Vv~i~GDG~~~~~g-~~~l~ta~~~~l~------i~ivVlNN~~yg~~~~ 132 (237)
T cd02018 64 NAVASGLKRGLKARFPKDRE----LDKKKDVVVIGGDGATYDIG-FGALSHSLFRGED------ITVIVLDNEVYSNTGG 132 (237)
T ss_pred HHHHHHHHHHHHhhcccccc----cCCCCcEEEEeCchHHHhcc-HHHHHHHHHcCCC------eEEEEECCccccCCCC
Confidence 44677788888887762210 11234699999999852112 44555444 899 999999997 465420
Q ss_pred CC-----c-----------ccccccHhHhhhhcCCcEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 493 PR-----F-----------SRSSSYCTDVARVVNAPIFH-VNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 493 ~~-----~-----------~rss~~~td~Ak~~giP~~h-VDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
.. . .....+...+|+++|++.+. |+=.+++++..|.++|++ +.++|+|||+.+
T Consensus 133 q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~---~~~GP~lI~v~i 202 (237)
T cd02018 133 QRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAIS---RTDGPTFIHAYT 202 (237)
T ss_pred CCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHh---cCCCCEEEEEeC
Confidence 10 0 11235688999999999986 344579999988888874 367899999985
No 83
>PRK08266 hypothetical protein; Provisional
Probab=98.42 E-value=7.7e-07 Score=106.59 Aligned_cols=116 Identities=20% Similarity=0.206 Sum_probs=83.5
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|.|+|+++|... .-+||+.|||+| ..+ ..|-...+ +|| +++||.||+ ||+...
T Consensus 402 GsmG~~lp~aiGa~la~p~---------~~vv~v~GDG~f-~~~-~~eL~ta~~~~lp------v~ivv~NN~~y~~~~~ 464 (542)
T PRK08266 402 GTLGYGFPTALGAKVANPD---------RPVVSITGDGGF-MFG-VQELATAVQHNIG------VVTVVFNNNAYGNVRR 464 (542)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcchhh-hcc-HHHHHHHHHhCCC------eEEEEEeCCcchHHHH
Confidence 4567778899998877533 358999999997 344 45544433 999 999999994 886431
Q ss_pred CCc----c------cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCC
Q psy8742 493 PRF----S------RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGH 554 (968)
Q Consensus 493 ~~~----~------rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GH 554 (968)
... . ....+...+|++||+++++|+ +++++..+.++|+ +.++|+|||+.++|...+
T Consensus 465 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 465 DQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAAL----AHGGPVLIEVPVPRGSEA 530 (542)
T ss_pred HHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCcEEEEEEecCCCCc
Confidence 100 0 112467889999999999997 5777777777775 457899999999887543
No 84
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.41 E-value=3.4e-06 Score=93.87 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=90.3
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCc-cccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQI-GFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqi-g~TT 491 (968)
|..|...++|.|.++|.+.. +.+..+|++.|||++..-|. .+|.-| +.+ ++|||.||+. +.|-
T Consensus 69 ~~fg~~~a~a~Gi~~a~~~~-----~~~~~Vv~~~GDG~~~dIG~--~~L~~a~~r~~n------i~~ivlDNe~Y~nTG 135 (299)
T PRK11865 69 VAFENAAAVASGIERAVKAL-----GKKVNVVAIGGDGGTADIGF--QSLSGAMERGHN------ILYLMYDNEAYMNTG 135 (299)
T ss_pred hhhcchHHHHHHHHHHHHHh-----cCCCeEEEEeCCchHhhccH--HHHHHHHHcCCC------eEEEEECCccccCCC
Confidence 45688889999999998763 23456999999999766664 444444 788 9999999985 4331
Q ss_pred C-CCc--------------------ccccccHhHhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe-
Q psy8742 492 D-PRF--------------------SRSSSYCTDVARVVNAPIF-HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS- 548 (968)
Q Consensus 492 ~-~~~--------------------~rss~~~td~Ak~~giP~~-hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t- 548 (968)
- ++. .....++..++.++|++.+ .++-.|+..+.+++++|++ .+||.||++.+
T Consensus 136 gQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~sP 211 (299)
T PRK11865 136 IQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQP 211 (299)
T ss_pred CCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 1 000 1113457788999999988 6688999999999999985 57999999984
Q ss_pred -ecCCCCC
Q psy8742 549 -YRRNGHN 555 (968)
Q Consensus 549 -YR~~GHn 555 (968)
-..+||.
T Consensus 212 C~~~~~~~ 219 (299)
T PRK11865 212 CPTGWGFP 219 (299)
T ss_pred CCCCCCCC
Confidence 5555543
No 85
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=98.41 E-value=7.3e-07 Score=96.60 Aligned_cols=117 Identities=19% Similarity=0.288 Sum_probs=78.6
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~ 492 (968)
+|-++....|+|+|.|+.+ .+.+.-+|+++||||+ .-|..+|+||-+ +-+ +|.|..+|+..|+-+
T Consensus 111 GHsstsiSaa~Gma~ar~l-----~~~~~~vVaVIGDGal-t~Gma~EALN~~g~~~~~------liVILNDN~mSIs~n 178 (270)
T PF13292_consen 111 GHSSTSISAALGMAVARDL-----KGEDRKVVAVIGDGAL-TGGMAFEALNNAGHLKSN------LIVILNDNEMSISPN 178 (270)
T ss_dssp SSSS-HHHHHHHHHHHHHH-----HTS---EEEEEETTGG-GSHHHHHHHHHHHHHT-S------EEEEEEE-SBSSSB-
T ss_pred CccHhHHHHHHHHHHHHHh-----cCCCCcEEEEECCcch-hHHHHHHHHHHHHhcCCC------EEEEEeCCCcccCCC
Confidence 5777888999999999998 4566789999999995 589999999999 677 999999999988754
Q ss_pred CC-------cccccccH------------------------hHhhhh--------cCCcEE-EEeCCCHHHHHHHHHHHH
Q psy8742 493 PR-------FSRSSSYC------------------------TDVARV--------VNAPIF-HVNSDDPEAVIHVCNLAA 532 (968)
Q Consensus 493 ~~-------~~rss~~~------------------------td~Ak~--------~giP~~-hVDGnD~eAV~~a~~~Av 532 (968)
.. .-|+++.. .+-.|. +|+-++ -|||+|.+++..+.+.+.
T Consensus 179 vGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K 258 (270)
T PF13292_consen 179 VGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLENAK 258 (270)
T ss_dssp -SSHCCC-------------------------------------------CCCHHCT-EEEEEEETT-HHHHHHHHHHHC
T ss_pred cchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHHHh
Confidence 21 11211110 011122 266666 679999999998877765
Q ss_pred HHhhcCCCcEEEEEEe
Q psy8742 533 EWRNTFHKDVVIDIVS 548 (968)
Q Consensus 533 e~rr~~~gPvlIel~t 548 (968)
+.++||||+++|
T Consensus 259 ----~~~gPvllHV~T 270 (270)
T PF13292_consen 259 ----DIDGPVLLHVIT 270 (270)
T ss_dssp ----CSSSEEEEEEE-
T ss_pred ----cCCCCEEEEEeC
Confidence 579999999987
No 86
>PRK11269 glyoxylate carboligase; Provisional
Probab=98.38 E-value=9.9e-07 Score=106.87 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=86.1
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|..+|-|+|+++|... .-+||+.|||+| +=...|-...+ +|| +++||.||+ ||+--.
T Consensus 419 G~mG~glpaAiGa~la~p~---------r~Vv~i~GDG~f--~m~~~eL~Ta~~~~lp------v~~vV~NN~~~g~i~~ 481 (591)
T PRK11269 419 GPLGWTIPAALGVRAADPD---------RNVVALSGDYDF--QFLIEELAVGAQFNLP------YIHVLVNNAYLGLIRQ 481 (591)
T ss_pred ccccchhhhHHhhhhhCCC---------CcEEEEEccchh--hcCHHHHHHHHHhCCC------eEEEEEeCCchhHHHH
Confidence 4578888999999998643 249999999998 44455533333 899 999999998 664210
Q ss_pred ------------C--Cccc------ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 493 ------------P--RFSR------SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 493 ------------~--~~~r------ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
. .... ...+.+.+|++||+++.+|. +++++..|.++|++...+.+||+|||+.+-
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~ 556 (591)
T PRK11269 482 AQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILE 556 (591)
T ss_pred HHHHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEec
Confidence 0 0000 12567899999999999995 899999999999876656789999999983
No 87
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=98.38 E-value=9.5e-07 Score=106.58 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=81.2
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCC-ccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQ-IGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNq-ig~TT 491 (968)
+.+|...|.|+|+++|... .-+|++.|||+| +-.++| |..+ +|| +++||.||+ ||+-.
T Consensus 424 g~mG~glpaAiGaala~p~---------~~vv~i~GDGsf--~m~~~e-L~ta~r~~lp------i~ivV~NN~~~~~i~ 485 (571)
T PRK07710 424 GTMGFGLPAAIGAQLAKPD---------ETVVAIVGDGGF--QMTLQE-LSVIKELSLP------VKVVILNNEALGMVR 485 (571)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchHH--hhhHHH-HHHHHHhCCC------eEEEEEECchHHHHH
Confidence 5678888999999988543 357999999998 566777 5545 899 888888887 55321
Q ss_pred -----------CCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 -----------DPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 -----------~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
.........+...+|++||+++++|+ +++++..+.+.|+ +.+||+|||+.+-+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lieV~vd~ 549 (571)
T PRK07710 486 QWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAI----ELQEPVVIDCRVLQ 549 (571)
T ss_pred HHHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 00111123567899999999999997 4677766666665 46789999999864
No 88
>PRK12474 hypothetical protein; Provisional
Probab=98.36 E-value=1.3e-06 Score=104.10 Aligned_cols=110 Identities=10% Similarity=0.065 Sum_probs=83.6
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|-|+|+++|... .-+||+.|||+| |=..+|=-.++ +|| +++||.||+ ||+--.
T Consensus 389 gsmG~glpaAiGa~lA~p~---------r~vv~i~GDG~f--~m~~qEL~Ta~r~~lp------v~iiV~NN~~y~~i~~ 451 (518)
T PRK12474 389 GSIGQGLPLAAGAAVAAPD---------RKVVCPQGDGGA--AYTMQALWTMARENLD------VTVVIFANRSYAILNG 451 (518)
T ss_pred CccCccHHHHHHHHHHCCC---------CcEEEEEcCchh--cchHHHHHHHHHHCCC------cEEEEEcCCcchHHHH
Confidence 6788899999999998643 237999999998 66667766666 999 999999997 775310
Q ss_pred ---------CCc------ccc--cccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 493 ---------PRF------SRS--SSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 493 ---------~~~------~rs--s~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
... ... ..+.+.+|++||+++++|+ +++++..+.++|++ .++|+|||+.+
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~----~~~p~liev~~ 518 (518)
T PRK12474 452 ELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA----QRGPRLIEAMI 518 (518)
T ss_pred HHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 000 001 1357889999999999997 68888888888863 47899999964
No 89
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=98.35 E-value=2.5e-06 Score=95.20 Aligned_cols=119 Identities=19% Similarity=0.176 Sum_probs=84.7
Q ss_pred ccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccCCC
Q psy8742 418 LEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTDPR 494 (968)
Q Consensus 418 Lea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~~~ 494 (968)
.|...|.|+|+++|... .-+|++.|||+|.+-| ..|-...+ ++| +++||.||+ ||.+....
T Consensus 72 mG~alpaAiGaklA~pd---------~~VV~i~GDG~~~~mg-~~eL~tA~r~nl~------i~vIV~NN~~YG~t~gQ~ 135 (301)
T PRK05778 72 HGRAIAFATGAKLANPD---------LEVIVVGGDGDLASIG-GGHFIHAGRRNID------ITVIVENNGIYGLTKGQA 135 (301)
T ss_pred hccHHHHHHHHHHHCCC---------CcEEEEeCccHHHhcc-HHHHHHHHHHCCC------cEEEEEeCchhhcccCcc
Confidence 36778999999998644 3489999999963333 34555555 899 999999997 47654210
Q ss_pred ------cc----------cccccHhHhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE--eecCCCCC
Q psy8742 495 ------FS----------RSSSYCTDVARVVNAPIF-HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIV--SYRRNGHN 555 (968)
Q Consensus 495 ------~~----------rss~~~td~Ak~~giP~~-hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~--tYR~~GHn 555 (968)
.. ....+...+|+++|++.+ ++.-.++..+..+.++|++ .++|+|||+. |--.+|.+
T Consensus 136 s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~~C~~~~~~~ 211 (301)
T PRK05778 136 SPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLSPCVTFNGRN 211 (301)
T ss_pred cCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCCcC
Confidence 00 012467889999999986 5566799999999999884 5789999976 44445544
Q ss_pred C
Q psy8742 556 E 556 (968)
Q Consensus 556 e 556 (968)
.
T Consensus 212 ~ 212 (301)
T PRK05778 212 T 212 (301)
T ss_pred C
Confidence 4
No 90
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=98.35 E-value=9.1e-07 Score=107.11 Aligned_cols=115 Identities=18% Similarity=0.118 Sum_probs=86.0
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcC-Cccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNN-QIGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNN-qig~TT- 491 (968)
+.+|...|.|+|++.|... .-+|++.|||+| +=...|-.+.+ +|| +++||.|| .||+..
T Consensus 435 g~mG~glp~aiGa~la~p~---------r~vv~i~GDG~f--~~~~~el~Ta~~~~lp------v~ivV~NN~~y~~~~~ 497 (588)
T PRK07525 435 GNCGYAFPAIIGAKIACPD---------RPVVGFAGDGAW--GISMNEVMTAVRHNWP------VTAVVFRNYQWGAEKK 497 (588)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcCchH--hccHHHHHHHHHhCCC------eEEEEEeCchhHHHHH
Confidence 4578888999999988543 358999999997 33467777666 899 88888777 567421
Q ss_pred --------CCC--cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 --------DPR--FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 --------~~~--~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
... +-....+...+|++||+++++|+ +++++..+.+.|++.. +.++|+|||+.+=|
T Consensus 498 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~ 563 (588)
T PRK07525 498 NQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQ 563 (588)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEecc
Confidence 000 00112477889999999999996 8999999999998754 24689999999843
No 91
>PRK06154 hypothetical protein; Provisional
Probab=98.35 E-value=1.3e-06 Score=105.43 Aligned_cols=113 Identities=20% Similarity=0.177 Sum_probs=84.5
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|-|+|+++|... .-+|++.|||+| +=.+.|-..++ +|| +|+||.||+ ||+-..
T Consensus 431 gsmG~glpaaiGa~la~p~---------r~Vv~i~GDG~f--~m~~~EL~Ta~r~~lp------i~~vV~NN~~yg~~~~ 493 (565)
T PRK06154 431 TQLGYGLGLAMGAKLARPD---------ALVINLWGDAAF--GMTGMDFETAVRERIP------ILTILLNNFSMGGYDK 493 (565)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcchHH--hccHHHHHHHHHhCCC------eEEEEEECCccceeeh
Confidence 4567788899999888643 359999999997 55556655554 999 999999997 664221
Q ss_pred C-------Cc-ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 493 P-------RF-SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 493 ~-------~~-~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
. .. .....+.+.+|++||+++++|+ +++++..+++.|+++.+ .++|+|||+.+
T Consensus 494 ~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v 554 (565)
T PRK06154 494 VMPVSTTKYRATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVIT 554 (565)
T ss_pred hhhhhcCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEe
Confidence 0 00 0012467889999999999998 79999999999987543 36799999987
No 92
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=98.35 E-value=1.4e-06 Score=104.87 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=83.7
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|.|+|+++|... ..+|++.|||+| +-.++|-...+ +|| +|+||.||+ ||+...
T Consensus 419 g~mG~~lpaaiGa~la~~~---------~~vv~i~GDGsf--~~~~~eL~ta~~~~lp------vi~vV~NN~~~g~~~~ 481 (564)
T PRK08155 419 GTMGFGLPAAIGAALANPE---------RKVLCFSGDGSL--MMNIQEMATAAENQLD------VKIILMNNEALGLVHQ 481 (564)
T ss_pred ccccchhHHHHHHHHhCCC---------CcEEEEEccchh--hccHHHHHHHHHhCCC------eEEEEEeCCcccccHH
Confidence 4568888999999998643 358999999997 44577855544 899 999999998 776431
Q ss_pred C----------C-cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 493 P----------R-FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 493 ~----------~-~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
. . +.....+...+|++||++++.|+ +++++..+.+.|++ .++|+|||+.+=
T Consensus 482 ~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~~ 543 (564)
T PRK08155 482 QQSLFYGQRVFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRID 543 (564)
T ss_pred HHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 0 0 00123467889999999999988 68888777777764 478999999983
No 93
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=98.33 E-value=1.6e-06 Score=104.75 Aligned_cols=112 Identities=25% Similarity=0.228 Sum_probs=81.4
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT- 491 (968)
+.+|...|-|+|++.|... .-+|++.|||+| +=...|-..++ +|| +++||.||+ ||+..
T Consensus 408 gsmG~glpaAiGa~la~p~---------r~Vv~i~GDGsf--~m~~~eL~Tavr~~lp------i~~VV~NN~~yg~i~~ 470 (575)
T TIGR02720 408 ATMGVGVPGAIAAKLNYPD---------RQVFNLAGDGAF--SMTMQDLLTQVQYHLP------VINIVFSNCTYGFIKD 470 (575)
T ss_pred chhhchHHHHHHHHHhCCC---------CcEEEEEcccHH--HhhHHHHHHHHHhCCC------eEEEEEeCCccHHHHH
Confidence 4567777888888777533 358999999998 44456644444 999 888877776 78531
Q ss_pred -----C-CCc--ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 492 -----D-PRF--SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 492 -----~-~~~--~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
. ... .....+.+.+|++||+++++|+ +++++..+.++|++ . +.++|+|||+.+
T Consensus 471 ~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i 531 (575)
T TIGR02720 471 EQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKI 531 (575)
T ss_pred HHHHhCCCcccccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEe
Confidence 1 000 0123568899999999999995 78889888888876 3 347899999988
No 94
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=98.33 E-value=1.8e-06 Score=93.20 Aligned_cols=112 Identities=13% Similarity=0.035 Sum_probs=79.2
Q ss_pred CccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccCC
Q psy8742 417 HLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTDP 493 (968)
Q Consensus 417 hLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~~ 493 (968)
.+|...|.|+|++.|.. +.-+|++.|||+| .+=.+.|-.+++ ++| +++||.||+ ||++--.
T Consensus 63 smG~GlpaAiGa~~a~p---------~r~VV~i~GDG~~-~~m~~~eL~ta~~~~~p------v~~vVlNN~~yg~tg~q 126 (235)
T cd03376 63 AVASGIEAALKALGRGK---------DITVVAFAGDGGT-ADIGFQALSGAAERGHD------ILYICYDNEAYMNTGIQ 126 (235)
T ss_pred HHHHHHHHHHHHhccCC---------CCeEEEEEcCchH-HhhHHHHHHHHHHcCCC------eEEEEECCcccccCCCC
Confidence 45666666666644422 2358999999994 244456655555 899 999999997 4742110
Q ss_pred C------cc---------------cccccHhHhhhhcCCcEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 494 R------FS---------------RSSSYCTDVARVVNAPIFH-VNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 494 ~------~~---------------rss~~~td~Ak~~giP~~h-VDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
. .. ....+...+|+++|++.+. ++..+++++..+.++|++ ..+|+|||+.+
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~ 199 (235)
T cd03376 127 RSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILS 199 (235)
T ss_pred CCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 0 00 1225678899999999884 677899999999999885 47899999975
No 95
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=98.32 E-value=1.8e-06 Score=95.39 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=79.9
Q ss_pred cccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc----
Q psy8742 419 EAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT---- 491 (968)
Q Consensus 419 ea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT---- 491 (968)
|...|.|+|+++|... .-+|++.|||+|.. -...|+...+ ++| +++||.||+ ||++-
T Consensus 71 G~alPaAiGaklA~Pd---------r~VV~i~GDG~f~~-~g~~el~ta~r~nlp------i~iIV~NN~~yGmt~~Q~~ 134 (277)
T PRK09628 71 GRAVAYATGIKLANPD---------KHVIVVSGDGDGLA-IGGNHTIHGCRRNID------LNFILINNFIYGLTNSQTS 134 (277)
T ss_pred ccHHHHHHHHHHHCCC---------CeEEEEECchHHHH-hhHHHHHHHHHhCcC------eEEEEEEChHHhcceeccc
Confidence 6677999999998643 35899999999632 2356776666 899 999999996 47643
Q ss_pred ---CCC-------ccc--ccccHhHhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 492 ---DPR-------FSR--SSSYCTDVARVVNAPIF-HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 492 ---~~~-------~~r--ss~~~td~Ak~~giP~~-hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
+.. ... ...+...+|+++|++.+ +..-.+++.+..+.++|++ .+||+|||+.+
T Consensus 135 ~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~----~~Gp~lIeV~~ 200 (277)
T PRK09628 135 PTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGFS----HKGFSFFDVFS 200 (277)
T ss_pred CCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHh----CCCCEEEEEcC
Confidence 100 011 11255899999999986 3344589999888888875 57899999975
No 96
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=98.32 E-value=1.7e-06 Score=104.62 Aligned_cols=110 Identities=22% Similarity=0.294 Sum_probs=79.5
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCc-cccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQI-GFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqi-g~TT 491 (968)
+.+|...|.|+|+++|... .-+||+.|||+| + .....|+.+ +|| +++||.||+. |+..
T Consensus 437 gsmG~~l~~aiGa~la~~~---------~~vv~i~GDGsf--~-~~~~el~ta~~~~l~------~~~vv~NN~~~g~~~ 498 (578)
T PRK06112 437 AGLGWGVPMAIGAKVARPG---------APVICLVGDGGF--A-HVWAELETARRMGVP------VTIVVLNNGILGFQK 498 (578)
T ss_pred cccccHHHHHHHHHhhCCC---------CcEEEEEcchHH--H-hHHHHHHHHHHhCCC------eEEEEEeCCccCCEE
Confidence 4568888999999887543 359999999997 3 334445555 899 9999999973 4322
Q ss_pred CCCc----c------cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 492 DPRF----S------RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 492 ~~~~----~------rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
.... . ....+...+|++||++++.|+ +++++..+.++|+ +.++|+|||+++-
T Consensus 499 ~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIev~~~ 560 (578)
T PRK06112 499 HAETVKFGTHTDACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAM----AAPGPTLIEVITD 560 (578)
T ss_pred eccccccCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEcC
Confidence 1000 0 012457889999999999997 5777777766665 4578999999983
No 97
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=98.30 E-value=2.1e-06 Score=103.31 Aligned_cols=112 Identities=20% Similarity=0.083 Sum_probs=78.5
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT- 491 (968)
+.+|...|.|+|+++|... .-+||+.|||+|. -...|-...+ +|| +++||.||. ||+..
T Consensus 415 g~mG~glpaaiGa~la~p~---------~~vv~i~GDGsf~--~~~~el~ta~~~~l~------i~~vv~nN~~~~~~~~ 477 (557)
T PRK08199 415 GSMGYGLPAAIAAKLLFPE---------RTVVAFAGDGCFL--MNGQELATAVQYGLP------IIVIVVNNGMYGTIRM 477 (557)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchHhh--ccHHHHHHHHHhCCC------eEEEEEeCCcchHHHH
Confidence 4566777888887777533 3589999999973 2334433333 899 999999998 67432
Q ss_pred CCCc---------ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 DPRF---------SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 ~~~~---------~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
.... .....+.+++|++||+++++|+ +++++..+.+.|+ +.+||+|||+.+-+
T Consensus 478 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~li~v~~~~ 539 (557)
T PRK08199 478 HQEREYPGRVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERAL----ASGKPALIEIRIDP 539 (557)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCH
Confidence 1000 0012467899999999999998 6777777777765 45789999999843
No 98
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.30 E-value=1.3e-06 Score=105.03 Aligned_cols=112 Identities=21% Similarity=0.133 Sum_probs=83.5
Q ss_pred CccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccCC
Q psy8742 417 HLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTDP 493 (968)
Q Consensus 417 hLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~~ 493 (968)
.+|...|-|+|++.|.-. .-+|++.|||+| +-..+|=.... ++| +++||.||+ ||+.-..
T Consensus 409 tMG~glPaAIGAkla~P~---------r~Vv~i~GDG~F--~m~~qEL~Ta~r~~lp------v~ivv~nN~~~g~v~~~ 471 (550)
T COG0028 409 TMGFGLPAAIGAKLAAPD---------RKVVAIAGDGGF--MMNGQELETAVRYGLP------VKIVVLNNGGYGMVRQW 471 (550)
T ss_pred cccchHHHHHHHHhhCCC---------CcEEEEEcccHH--hccHHHHHHHHHhCCC------EEEEEEECCccccchHH
Confidence 346677888888888653 459999999998 44455544443 899 999999998 6765422
Q ss_pred Cccccc---------cc-HhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecC
Q psy8742 494 RFSRSS---------SY-CTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRR 551 (968)
Q Consensus 494 ~~~rss---------~~-~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~ 551 (968)
....-. .. ...+|++||+.+++|+ +++++..+.++|+ +-.+|+|||+.+-+-
T Consensus 472 q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al----~~~~p~lidv~id~~ 533 (550)
T COG0028 472 QELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEAL----ASDGPVLIDVVVDPE 533 (550)
T ss_pred HHHhcCCCcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecCc
Confidence 111111 11 7889999999999999 9999999888888 467899999988553
No 99
>PRK07586 hypothetical protein; Validated
Probab=98.29 E-value=2e-06 Score=102.48 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=80.6
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT- 491 (968)
+.+|...|.|+|+++|... .-+||+.|||+| +=..+|=-..+ +|| +++||.||+ ||+--
T Consensus 385 g~mG~~lpaaiGa~lA~p~---------r~Vv~i~GDGsf--~m~~~EL~Ta~~~~lp------v~ivV~NN~~y~~~~~ 447 (514)
T PRK07586 385 GAIGQGLPLATGAAVACPD---------RKVLALQGDGSA--MYTIQALWTQARENLD------VTTVIFANRAYAILRG 447 (514)
T ss_pred cccccHHHHHHHHHHhCCC---------CeEEEEEechHH--HhHHHHHHHHHHcCCC------CEEEEEeCchhHHHHH
Confidence 5678888999999988643 358999999997 44455544444 999 888888886 76421
Q ss_pred ------C--C-C------ccc-ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 492 ------D--P-R------FSR-SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 492 ------~--~-~------~~r-ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
. + . +.. ...+...+|++||+++++|+ +++++..+.++|++ .++|+|||+.+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~~p~liev~~ 514 (514)
T PRK07586 448 ELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALA----EPGPHLIEAVV 514 (514)
T ss_pred HHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 0 0 001 12467889999999999996 78888888888864 47899999863
No 100
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=98.29 E-value=1.2e-06 Score=106.21 Aligned_cols=114 Identities=22% Similarity=0.247 Sum_probs=84.4
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|-|+|+++|... .-+|++.|||+| +=...|=...+ +|| +++||.||. ||+--.
T Consensus 418 gsmG~glpaaiGa~lA~pd---------r~Vv~i~GDG~f--~m~~~EL~Ta~r~~lp------vv~iV~NN~~yg~i~~ 480 (588)
T TIGR01504 418 GPLGWTIPAALGVCAADPK---------RNVVALSGDYDF--QFMIEELAVGAQHNIP------YIHVLVNNAYLGLIRQ 480 (588)
T ss_pred ccccchHhHHHhhhhhCCC---------CcEEEEEcchHh--hccHHHHHHHHHhCCC------eEEEEEeCCchHHHHH
Confidence 4577888999999988644 248899999998 44455544444 999 998888886 765210
Q ss_pred C-----Cc-------c--c------ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 493 P-----RF-------S--R------SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 493 ~-----~~-------~--r------ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
. .. . . ...+...+|++||+++.+|+ +++++..|.+.|++-+.+.++|+|||+.+
T Consensus 481 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i 554 (588)
T TIGR01504 481 AQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVIL 554 (588)
T ss_pred HHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEe
Confidence 0 00 0 0 02467889999999999995 79999999999987554457999999998
No 101
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=98.29 E-value=2.5e-06 Score=103.07 Aligned_cols=111 Identities=18% Similarity=0.209 Sum_probs=82.1
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|-|+|+++|... .-+|++.|||+| |=.+.|=...+ +|| +++||.||+ ||+.-.
T Consensus 408 G~mG~~lpaAiGa~la~p~---------r~vv~i~GDGsf--~m~~~eL~Ta~~~~lp------v~ivV~NN~~~g~i~~ 470 (574)
T PRK09124 408 GSMANAMPQALGAQAAHPG---------RQVVALSGDGGF--SMLMGDFLSLVQLKLP------VKIVVFNNSVLGFVAM 470 (574)
T ss_pred ccccchHHHHHHHHHhCCC---------CeEEEEecCcHH--hccHHHHHHHHHhCCC------eEEEEEeCCccccHHH
Confidence 4567778999999988643 247999999998 55666655544 899 888888886 676410
Q ss_pred ------C-Ccc--cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 493 ------P-RFS--RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 493 ------~-~~~--rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
. ... -...+.+.+|++||+++++|+ +++++..+.+.|++ -++|+|||+.+=
T Consensus 471 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i~ 530 (574)
T PRK09124 471 EMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTA 530 (574)
T ss_pred HHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 0 000 122467889999999999996 78888888888874 468999999874
No 102
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=98.28 E-value=1.1e-05 Score=88.20 Aligned_cols=191 Identities=17% Similarity=0.240 Sum_probs=135.0
Q ss_pred hhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCcccc
Q psy8742 703 SLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVC 782 (968)
Q Consensus 703 sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~i 782 (968)
.|-..+.+|.+.=-|+.. +.-+..+.++| |.|++|--|+|+.++|++.|.|+.|.+|++
T Consensus 19 ~l~~~~~diVvl~ADl~~-------------------St~~~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv- 77 (312)
T COG3958 19 ELGRKNSDIVVLDADLSS-------------------STKTGYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFV- 77 (312)
T ss_pred HHHhcCCCEEEEeccccc-------------------ccchhHHHHhC-chhheecchHHHHHHHHHHHHHhcCCCcee-
Confidence 455678888888888754 23455667778 899999999999999999999999999998
Q ss_pred ccchhhhhHh-hhhHHHHHHHhhhccccccccCcEEEcCc-cC-CC-CCcccCCChHHHHhcccCCCCcccccccchhhh
Q psy8742 783 WEAQFGDFNN-TAQCIIDQFISSGQAKWVRQSGLVMLLPH-GL-EG-MGPEHSSARLERFLQMSDDEPIRVILVLVPIEF 858 (968)
Q Consensus 783 WE~qfgDF~~-~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~-~g-~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~ 858 (968)
--|+-|+- -| +||+.++--+. ..++-+..-| |+ .| -||.|-+ +|-+-=| ..+|
T Consensus 78 --~tfa~F~s~Ra---~EQir~~iay~---~lnVKiv~t~~G~t~g~dG~sHq~--~EDiaim-----R~lp-------- 134 (312)
T COG3958 78 --STFAAFLSRRA---WEQIRNSIAYN---NLNVKIVATHAGVTYGEDGSSHQA--LEDIAIM-----RGLP-------- 134 (312)
T ss_pred --echHHHHHHHH---HHHHHHHhhhc---cCCeEEEEecCCcccCCCCccchh--HHHHHHH-----hcCC--------
Confidence 58999988 78 99998864221 4677777777 55 45 6888865 4543211 6788
Q ss_pred hhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccccCCCC
Q psy8742 859 AVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADS 938 (968)
Q Consensus 859 ~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~ 938 (968)
||.|+.|+.+-+...+++..+..+ .|+-+ .|.|.+..+ .+++- +-.|+. +.... .++.++
T Consensus 135 --------n~~V~~P~D~v~~~~i~~~~~~~~--GP~Y~----Rl~R~~~p~-~~~~~--~~~F~i--Gka~v-LrdG~D 194 (312)
T COG3958 135 --------NMTVIAPADAVETRAILDQIADYK--GPVYM----RLGRGKVPV-VVDEG--GYTFEI--GKANV-LRDGSD 194 (312)
T ss_pred --------CceEEccCcHHHHHHHHHHHHhcC--CCEEE----EecCCCCCc-eecCC--CceEec--cceeE-eecCCc
Confidence 999999999999888888776555 99877 455544332 22221 223542 21110 234454
Q ss_pred ccEEEEecchhHHHHHHHHHh
Q psy8742 939 VEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 939 v~rvilcsGkvyydl~~~r~~ 959 (968)
+ .|+.||-+-...+++-+.
T Consensus 195 ~--tiiA~G~mv~~al~AA~~ 213 (312)
T COG3958 195 L--TIIATGVMVAEALEAAEI 213 (312)
T ss_pred e--EEEecCcchHHHHHHHHH
Confidence 4 799999988877766543
No 103
>PRK07064 hypothetical protein; Provisional
Probab=98.26 E-value=2.7e-06 Score=102.00 Aligned_cols=111 Identities=13% Similarity=0.074 Sum_probs=82.6
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|.|+|++.|... .-+|++.|||+| +=...|=...+ +|| +++||.||+ ||+-..
T Consensus 405 g~mG~~lpaAiGa~lA~p~---------~~vv~i~GDGsf--~m~~~eL~Ta~~~~lp------v~ivV~NN~~yg~~~~ 467 (544)
T PRK07064 405 GGIGQGLAMAIGAALAGPG---------RKTVGLVGDGGL--MLNLGELATAVQENAN------MVIVLMNDGGYGVIRN 467 (544)
T ss_pred CccccccchhhhhhhhCcC---------CcEEEEEcchHh--hhhHHHHHHHHHhCCC------eEEEEEeCChhHHHHH
Confidence 5688889999999998643 248999999998 44555544444 899 888888876 664320
Q ss_pred ----------CCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 493 ----------PRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 493 ----------~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
........+...+|++||+++.+|+ .++++..+.++|++ .++|+|||+.++
T Consensus 468 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 468 IQDAQYGGRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 0001123567889999999999996 78888888888874 468999999986
No 104
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.26 E-value=3.1e-06 Score=102.21 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=80.9
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccc--
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFT-- 490 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~T-- 490 (968)
+.+|...|.|+|+++|... .-+|++.|||+| .. .+.|-...+ +|| +++||.||+ |++-
T Consensus 421 g~mG~~lp~aiGa~la~p~---------~~vv~i~GDG~f-~~-~~~eL~ta~~~~lp------v~~vV~NN~~~~~i~~ 483 (574)
T PRK06882 421 GTMGFGLPAAIGVKFAHPE---------ATVVCVTGDGSI-QM-NIQELSTAKQYDIP------VVIVSLNNRFLGMVKQ 483 (574)
T ss_pred ccccchhHHHHHHHhhcCC---------CcEEEEEcchhh-hc-cHHHHHHHHHhCCC------eEEEEEECchhHHHHH
Confidence 4567788999999988543 248999999997 33 345544443 899 999999997 3321
Q ss_pred -------cC--CCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 491 -------TD--PRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 491 -------T~--~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
.. ........+...+|++||+++++|+ +++++..+.++|++. .++|+|||+.+=|
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 484 WQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred HHHHhcCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 01 0010123467889999999999996 688888888888753 3689999999854
No 105
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=98.26 E-value=3.3e-06 Score=102.29 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=80.9
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccc--
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFT-- 490 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~T-- 490 (968)
+.+|...|.|+|++.|... .-+|++.|||+| +-...|-...+ +|| +++||.||+ ||+-
T Consensus 430 g~mG~glpaaiGaala~p~---------~~vv~i~GDG~f--~m~~~eL~Ta~~~~l~------~~~vV~NN~~y~~i~~ 492 (585)
T CHL00099 430 GTMGYGLPAAIGAQIAHPN---------ELVICISGDASF--QMNLQELGTIAQYNLP------IKIIIINNKWQGMVRQ 492 (585)
T ss_pred cchhhhHHHHHHHHHhCCC---------CeEEEEEcchhh--hhhHHHHHHHHHhCCC------eEEEEEECCcchHHHH
Confidence 5678888999999998653 248899999998 44444444434 999 999999998 3321
Q ss_pred -------cCC-C-c-ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 491 -------TDP-R-F-SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 491 -------T~~-~-~-~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
-.. . + .....+...+|++||+++++|+ +++++..+.+.|++ .++|+|||+.+=
T Consensus 493 ~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~v~ 555 (585)
T CHL00099 493 WQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD----YDGPVLIDCQVI 555 (585)
T ss_pred HHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEEC
Confidence 000 0 0 0012467889999999999996 68888888877764 578999999983
No 106
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=98.24 E-value=2.5e-06 Score=102.67 Aligned_cols=111 Identities=19% Similarity=0.208 Sum_probs=80.4
Q ss_pred CccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCCc-cccc--
Q psy8742 417 HLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQI-GFTT-- 491 (968)
Q Consensus 417 hLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNqi-g~TT-- 491 (968)
.+|...|.|+|+++|... ..+|++.|||+|. =.+.|-..++ +|| +++||.||+. |+..
T Consensus 413 ~mG~~l~aaiGa~la~~~---------~~vv~~~GDG~f~--~~~~eL~ta~~~~l~------~~~vv~NN~~~~~~~~~ 475 (558)
T TIGR00118 413 TMGFGLPAAIGAKVAKPE---------STVICITGDGSFQ--MNLQELSTAVQYDIP------VKILILNNRYLGMVRQW 475 (558)
T ss_pred cccchhhHHHhhhhhCCC---------CcEEEEEcchHHh--ccHHHHHHHHHhCCC------eEEEEEeCCchHHHHHH
Confidence 457778999999887532 3589999999973 2455544444 899 9999999984 3221
Q ss_pred -----C--C-C-cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 -----D--P-R-FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 -----~--~-~-~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
. . . ......+...+|++||+++++|+. ++++..+.+.|++ .++|+|||+.+-+
T Consensus 476 q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~al~~a~~----~~~p~liev~~~~ 537 (558)
T TIGR00118 476 QELFYEERYSHTHMGSLPDFVKLAEAYGIKGIRIEK--PEELDEKLKEALS----SNEPVLLDVVVDK 537 (558)
T ss_pred HHHhcCCceeeccCCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 0 0 001135678999999999999985 7888888888875 3789999999954
No 107
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=98.22 E-value=4.6e-06 Score=99.99 Aligned_cols=112 Identities=19% Similarity=0.143 Sum_probs=83.3
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|-|+|++.|... .-+|++.|||+| |-..+|=...+ +|| +++||.||. ||+--.
T Consensus 408 g~mG~~lpaaiGa~la~~~---------~~vv~i~GDGsf--~m~~~eL~Ta~~~~lp------i~ivV~NN~~y~~~~~ 470 (539)
T TIGR02418 408 QTLGVALPWAIGAALVRPN---------TKVVSVSGDGGF--LFSSMELETAVRLKLN------IVHIIWNDNGYNMVEF 470 (539)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcchhh--hchHHHHHHHHHhCCC------eEEEEEECCcchHHHH
Confidence 4678888999999988654 248899999998 66677765555 899 888888885 554210
Q ss_pred -----CCc----ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 493 -----PRF----SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 493 -----~~~----~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
... .....+...+|++||+++++|+ +++++..+.++|++ .++|+|||+.+-+
T Consensus 471 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 531 (539)
T TIGR02418 471 QEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVDIPVDY 531 (539)
T ss_pred HHHHhcCCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 000 0123567889999999999997 68888888888764 4689999999843
No 108
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=98.18 E-value=9.6e-06 Score=92.81 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=78.1
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CC-CCCCcccEEEEEEcCCc-cccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DL-PDYTTHGTIHIVVNNQI-GFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~L-P~y~~gGvIfVVeNNqi-g~TT 491 (968)
+.+|...|.|+|+++|... .-+||+.|||+| +-...|-...+ ++ | ++|||.||+. +.+.
T Consensus 221 GsMG~a~p~AlG~ala~p~---------r~Vv~i~GDGsf--lm~~~eL~t~~~~~~~n------li~VVlNNg~~~~~g 283 (361)
T TIGR03297 221 GSMGHASQIALGLALARPD---------QRVVCLDGDGAA--LMHMGGLATIGTQGPAN------LIHVLFNNGAHDSVG 283 (361)
T ss_pred chhhhHHHHHHHHHHHCCC---------CCEEEEEChHHH--HHHHHHHHHHHHhCCCC------eEEEEEcCccccccC
Confidence 4567788999999998654 249999999997 32233322222 54 6 9999999984 5432
Q ss_pred CCCcccccccHhHhhhhcCCc-EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 DPRFSRSSSYCTDVARVVNAP-IFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 ~~~~~rss~~~td~Ak~~giP-~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
.........+...+|+++|+. +++| ++++++..|.++|. +.++|+|||+.+-.
T Consensus 284 ~q~~~~~~~d~~~iA~a~G~~~~~~v--~~~~eL~~al~~a~----~~~gp~lIeV~v~~ 337 (361)
T TIGR03297 284 GQPTVSQHLDFAQIAKACGYAKVYEV--STLEELETALTAAS----SANGPRLIEVKVRP 337 (361)
T ss_pred CcCCCCCCCCHHHHHHHCCCceEEEe--CCHHHHHHHHHHHH----hCCCcEEEEEEecC
Confidence 111111235688999999974 5655 68999999988885 34789999999844
No 109
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.18 E-value=6.5e-06 Score=99.25 Aligned_cols=112 Identities=21% Similarity=0.197 Sum_probs=81.0
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|.|+|++.|... .-+||+.|||+| +=.++|-...+ +|| +|+||.||+ ||+-..
T Consensus 414 g~mG~~l~~aiGa~la~p~---------~~vv~i~GDG~f--~m~~~eL~Ta~~~~lp------vi~vV~NN~~~~~i~~ 476 (563)
T PRK08527 414 GTMGYGLPAALGAKLAVPD---------KVVINFTGDGSI--LMNIQELMTAVEYKIP------VINIILNNNFLGMVRQ 476 (563)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEecCchh--cccHHHHHHHHHhCCC------eEEEEEECCcchhHHH
Confidence 4567788999999988643 248999999997 44556633333 999 999999987 343110
Q ss_pred -----------CCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 493 -----------PRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 493 -----------~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
..+.....+...+|+++|+.+++|+ +++++..+.+.|++ .++|+|||+.+.+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~v~~ 539 (563)
T PRK08527 477 WQTFFYEERYSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE----SDKVALIDVKIDR 539 (563)
T ss_pred HHHhhcCCceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 0011112467889999999999996 78888777777764 4789999999976
No 110
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=98.18 E-value=5.7e-06 Score=99.46 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=80.9
Q ss_pred CCccccCchhhhHhhHhH-hhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQ-FYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q-~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT 491 (968)
+.+|...|-|+|++.|.. . .-+|++.|||+| +=...|-...+ +|| +++||.||+ ||+--
T Consensus 396 g~mG~glpaaiGa~la~p~~---------~~Vv~i~GDGsf--~~~~~eL~Ta~~~~lp------i~ivV~NN~~~g~i~ 458 (549)
T PRK06457 396 GSMGIGVPGSVGASFAVENK---------RQVISFVGDGGF--TMTMMELITAKKYDLP------VKIIIYNNSKLGMIK 458 (549)
T ss_pred chhhhhHHHHHHHHhcCCCC---------CeEEEEEcccHH--hhhHHHHHHHHHHCCC------eEEEEEECCccchHH
Confidence 566778899999998853 2 348999999998 44455544444 899 888888885 55321
Q ss_pred --------CC-CcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 492 --------DP-RFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 492 --------~~-~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
+. .......+...+|++||+++++|+ +++++..+.+.|++ .++|+|||+.+-
T Consensus 459 ~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~ 519 (549)
T PRK06457 459 FEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN----TKGPAVLDAIVD 519 (549)
T ss_pred HHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 00 000113467889999999999997 79999888888874 578999999984
No 111
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.17 E-value=6.9e-06 Score=90.80 Aligned_cols=110 Identities=17% Similarity=0.096 Sum_probs=82.6
Q ss_pred ccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcch-HHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc--
Q psy8742 418 LEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGV-VFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT-- 491 (968)
Q Consensus 418 Lea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGv-v~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT-- 491 (968)
+|...|.|+|+.+|... .-+|++.|||+| ... +.|-...+ ++| +++||.||+ ||+|.
T Consensus 62 mG~alp~AiGaklA~pd---------~~VVai~GDG~~--~~iG~~eL~tA~r~nl~------i~~IV~NN~~Yg~t~~Q 124 (280)
T PRK11869 62 HGRAIPAATAVKATNPE---------LTVIAEGGDGDM--YAEGGNHLIHAIRRNPD------ITVLVHNNQVYGLTKGQ 124 (280)
T ss_pred cccHHHHHHHHHHHCCC---------CcEEEEECchHH--hhCcHHHHHHHHHhCcC------cEEEEEECHHHhhhcce
Confidence 47788999999887432 358999999996 444 67777777 999 999999997 46542
Q ss_pred -----CC---------CcccccccHhHhhhhcCCcEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 492 -----DP---------RFSRSSSYCTDVARVVNAPIFHV-NSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 492 -----~~---------~~~rss~~~td~Ak~~giP~~hV-DGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
+. .......+...+|+++|++.+.. +-.+++++..+.++|++ .+||+|||+.+
T Consensus 125 ~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~ 192 (280)
T PRK11869 125 ASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQ 192 (280)
T ss_pred ecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 11 00011246788999999998873 46799999999999985 57899999975
No 112
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=98.16 E-value=6.6e-06 Score=99.54 Aligned_cols=114 Identities=22% Similarity=0.174 Sum_probs=83.3
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT- 491 (968)
+.+|...|-|+|++.|... .-+|++.|||+| +=...|-.... +|| +|+||.||+ ||+-.
T Consensus 430 g~mG~~lpaaiGa~la~p~---------~~Vv~i~GDG~f--~m~~~eL~Tavr~~lp------vi~vV~NN~~yg~i~~ 492 (579)
T TIGR03457 430 GNCGYAFPTIIGAKIAAPD---------RPVVAYAGDGAW--GMSMNEIMTAVRHDIP------VTAVVFRNRQWGAEKK 492 (579)
T ss_pred ccccchHHHHHhhhhhCCC---------CcEEEEEcchHH--hccHHHHHHHHHhCCC------eEEEEEECcchHHHHH
Confidence 4567788889998888533 347999999998 44445544444 999 888888776 66421
Q ss_pred ------CC--Cc-cc-ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 492 ------DP--RF-SR-SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 492 ------~~--~~-~r-ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
.. .. .. ...+...+|++||+++++|+ +++++..+.+.|++.. +.++|+|||+.+=
T Consensus 493 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~ 557 (579)
T TIGR03457 493 NQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCT 557 (579)
T ss_pred HHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeC
Confidence 00 00 01 11367889999999999985 8999999999998754 3468999999984
No 113
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.15 E-value=6.6e-06 Score=99.41 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=82.9
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT- 491 (968)
+.+|...|-|+|++.|... .-+|++.|||+| +=...|--..+ +|| +++||.||+ ||+-.
T Consensus 421 g~mG~glpaaiGa~la~p~---------~~vv~i~GDG~f--~m~~~eL~Ta~r~~l~------v~ivV~NN~~yg~i~~ 483 (574)
T PRK07979 421 GTMGFGLPAALGVKMALPE---------ETVVCVTGDGSI--QMNIQELSTALQYELP------VLVLNLNNRYLGMVKQ 483 (574)
T ss_pred cchhhHHHHHHHHHHhCCC---------CeEEEEEcchhh--hccHHHHHHHHHhCCC------eEEEEEeCchhhHHHH
Confidence 5578888999999988643 247999999998 33344433333 999 999998886 55411
Q ss_pred --------CCCcc--cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 492 --------DPRFS--RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 492 --------~~~~~--rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
..... ....+...+|++||+++++|+ +++++..+.+.|++..+. ++|+|||+.+=
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~~-~~p~lIeV~i~ 548 (574)
T PRK07979 484 WQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVRN-NRLVFVDVTVD 548 (574)
T ss_pred HHHHhcCCccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccCC-CCcEEEEEEEC
Confidence 11111 122567889999999999995 899999999999875433 68999999984
No 114
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.15 E-value=7.2e-06 Score=99.63 Aligned_cols=112 Identities=20% Similarity=0.194 Sum_probs=83.8
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT- 491 (968)
+.+|...|.|+|+++|... .-+|++.|||+| +=.+.|-...+ +|| +|+||.||+ ||+-.
T Consensus 430 gsmG~glpaaiGa~lA~p~---------r~Vv~i~GDG~f--~m~~~EL~Ta~r~~lp------vi~vV~NN~~y~~i~~ 492 (595)
T PRK09107 430 GTMGYGLPAALGVQIAHPD---------ALVIDIAGDASI--QMCIQEMSTAVQYNLP------VKIFILNNQYMGMVRQ 492 (595)
T ss_pred hhhhhhHHHHHHHHHhCCC---------CeEEEEEcCchh--hccHHHHHHHHHhCCC------eEEEEEeCCccHHHHH
Confidence 5678888999999998643 358999999998 55556644444 999 999999997 55411
Q ss_pred --------CCCcc--cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 --------DPRFS--RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 --------~~~~~--rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
..... ....+.+.+|++||+++++|+ +++++..+.+.|++ -++|+|||+.+-+
T Consensus 493 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 493 WQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred HHHHHhCCccccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 00101 022567889999999999994 89999888888875 3789999999854
No 115
>PRK05858 hypothetical protein; Provisional
Probab=98.15 E-value=5.6e-06 Score=99.38 Aligned_cols=110 Identities=19% Similarity=0.191 Sum_probs=82.2
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT- 491 (968)
+.+|...|.++|++.|... .-+|++.|||+| +=.++|-...+ +|| +++||.||+ ||+.-
T Consensus 407 gsmG~~lp~aiGa~la~p~---------r~vv~i~GDG~f--~~~~~eL~Ta~~~~lp------i~ivV~NN~~y~~~~~ 469 (542)
T PRK05858 407 GCLGTGPGYALAARLARPS---------RQVVLLQGDGAF--GFSLMDVDTLVRHNLP------VVSVIGNNGIWGLEKH 469 (542)
T ss_pred cccccchhHHHHHHHhCCC---------CcEEEEEcCchh--cCcHHHHHHHHHcCCC------EEEEEEeCCchhhHHH
Confidence 3467778999999888543 349999999997 55566666666 899 898888884 55421
Q ss_pred --------CCC-cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 492 --------DPR-FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 492 --------~~~-~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
+.. +.....+...+|++||+++.+|+ +++++..+.++|++ .++|+|||+.+
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~~ 529 (542)
T PRK05858 470 PMEALYGYDVAADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA----SGVPYLVNVLT 529 (542)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEE
Confidence 000 01123567889999999999998 78888888888874 57899999998
No 116
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=98.14 E-value=4.4e-06 Score=101.83 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=81.5
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|-|+|++.|... .-+|++.|||+| +-..+|-...+ +|| +|+||.||+ ||+-..
T Consensus 434 g~mG~glpaAiGA~lA~p~---------r~Vv~i~GDG~f--~m~~~eL~Ta~r~~lp------vi~vV~NN~~~g~i~~ 496 (616)
T PRK07418 434 GTMGFGMPAAMGVKVALPD---------EEVICIAGDASF--LMNIQELGTLAQYGIN------VKTVIINNGWQGMVRQ 496 (616)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcchHh--hhhHHHHHHHHHhCCC------eEEEEEECCcchHHHH
Confidence 5567788888888887533 247999999998 45556644444 899 999999987 454220
Q ss_pred --------CCccc----ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 493 --------PRFSR----SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 493 --------~~~~r----ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
..... ...+.+.+|+++|+++++|+ +++++..|.+.|++ .++|+|||+.+.
T Consensus 497 ~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~----~~~p~lIeV~i~ 559 (616)
T PRK07418 497 WQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA----HDGPVLIDVHVR 559 (616)
T ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 00000 12567889999999999997 89999888888874 578999999985
No 117
>PRK08322 acetolactate synthase; Reviewed
Probab=98.12 E-value=8.4e-06 Score=97.80 Aligned_cols=111 Identities=15% Similarity=0.066 Sum_probs=80.5
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|.|+|++.|... .-+|++.|||+| +-...|-.+.+ ++| +++||.||+ ||+...
T Consensus 406 g~mG~~lpaaiGa~la~p~---------~~vv~i~GDGsf--~m~~~eL~Ta~~~~lp------v~iiV~NN~~~g~~~~ 468 (547)
T PRK08322 406 ATMGAGLPSAIAAKLVHPD---------RKVLAVCGDGGF--MMNSQELETAVRLGLP------LVVLILNDNAYGMIRW 468 (547)
T ss_pred ccccchhHHHHHHHHhCCC---------CcEEEEEcchhH--hccHHHHHHHHHhCCC------eEEEEEeCCCcchHHH
Confidence 3467788999999888533 248899999998 44555654444 899 888887775 564310
Q ss_pred -----CCc----ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 493 -----PRF----SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 493 -----~~~----~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
..+ ....++.+.+|++||+++++|+ +++++..+.++|++ .++|+|||+.+-
T Consensus 469 ~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~ 528 (547)
T PRK08322 469 KQENMGFEDFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVD 528 (547)
T ss_pred HHHhhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 000 0123567889999999999995 79999888888874 478999999984
No 118
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.11 E-value=8.8e-06 Score=98.65 Aligned_cols=112 Identities=16% Similarity=0.125 Sum_probs=81.5
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccc--
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFT-- 490 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~T-- 490 (968)
+.+|...|.|+|++.|... .-+|++.|||+| +=...|=.... +|| +|+||.||+ ||+-
T Consensus 437 gsmG~glpaaiGa~lA~p~---------r~Vv~i~GDGsf--~m~~~eL~Ta~r~~lp------viivV~NN~~~~~i~~ 499 (587)
T PRK06965 437 GTMGVGLPYAMGIKMAHPD---------DDVVCITGEGSI--QMCIQELSTCLQYDTP------VKIISLNNRYLGMVRQ 499 (587)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchhh--hcCHHHHHHHHHcCCC------eEEEEEECCcchHHHH
Confidence 4577888999999988643 248899999998 44445544333 899 999999997 3421
Q ss_pred -------cCCCcc--cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 491 -------TDPRFS--RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 491 -------T~~~~~--rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
...... ...++...+|++||+++++|+ +++++..+.++|++. -++|+|||+.+=
T Consensus 500 ~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lieV~i~ 562 (587)
T PRK06965 500 WQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL---KDRTVFLDFQTD 562 (587)
T ss_pred HHHHhcCCCccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEec
Confidence 111000 023467889999999999996 789998898888863 257999999883
No 119
>PLN02573 pyruvate decarboxylase
Probab=98.11 E-value=6.8e-06 Score=99.48 Aligned_cols=112 Identities=14% Similarity=0.072 Sum_probs=83.4
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|-|+|+++|... .-+|++.|||+| |=..+|-...+ +|| +++||.||+ ||+-..
T Consensus 428 gsmG~glpaaiGa~lA~p~---------r~vv~i~GDG~f--~m~~~EL~Ta~r~~lp------vv~vV~NN~~yg~~~~ 490 (578)
T PLN02573 428 GSIGWSVGATLGYAQAAPD---------KRVIACIGDGSF--QVTAQDVSTMIRCGQK------SIIFLINNGGYTIEVE 490 (578)
T ss_pred hhhhhhhhHHHHHHHhCCC---------CceEEEEeccHH--HhHHHHHHHHHHcCCC------CEEEEEeCCceeEEEe
Confidence 5678888999999988643 349999999998 66666666665 899 888888886 564321
Q ss_pred CC----cccccccHhHhhhhcC-----CcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 493 PR----FSRSSSYCTDVARVVN-----APIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 493 ~~----~~rss~~~td~Ak~~g-----iP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
.. ......+.+.+|++|| +++++|+ +++++..+.++|++. ..++|+|||+.+
T Consensus 491 ~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v 551 (578)
T PLN02573 491 IHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIV 551 (578)
T ss_pred ecccCccccCCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEc
Confidence 00 1112356788999985 9999998 688888888888742 237899999987
No 120
>PLN02470 acetolactate synthase
Probab=98.10 E-value=1.1e-05 Score=97.93 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=80.0
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccc--
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFT-- 490 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~T-- 490 (968)
+.+|...|.|+|++.|... .-+|++.|||+| +=...|=-... +|| +++||.||+ ||+-
T Consensus 426 g~mG~glpaaiGa~la~p~---------~~Vv~i~GDG~f--~m~~~eL~Ta~~~~l~------v~ivV~NN~~yg~i~~ 488 (585)
T PLN02470 426 GAMGFGLPAAIGAAAANPD---------AIVVDIDGDGSF--IMNIQELATIHVENLP------VKIMVLNNQHLGMVVQ 488 (585)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEccchh--hccHHHHHHHHHhCCC------eEEEEEeCCcchHHHH
Confidence 4567888999999988643 247999999998 33344433333 899 999998886 4431
Q ss_pred -------cCCCccc---------ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 491 -------TDPRFSR---------SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 491 -------T~~~~~r---------ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
.+..... ...+.+.+|++||+++++|+ +++++..|.+.|++ -++|+|||+.+=
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i~ 557 (585)
T PLN02470 489 WEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIVP 557 (585)
T ss_pred HHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 1000000 01467889999999999996 79999888888875 368999999984
No 121
>PRK08617 acetolactate synthase; Reviewed
Probab=98.10 E-value=6.7e-06 Score=98.83 Aligned_cols=112 Identities=19% Similarity=0.098 Sum_probs=80.4
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|..+|.|+|++.|... .-+|++.|||+| +=...|-...+ +|| +++||.||+ ||+--.
T Consensus 414 g~mG~~lpaaiGa~la~p~---------~~vv~i~GDGsf--~m~~~eL~Ta~~~~lp------v~~vV~NN~~~~~~~~ 476 (552)
T PRK08617 414 QTLGVALPWAIAAALVRPG---------KKVVSVSGDGGF--LFSAMELETAVRLKLN------IVHIIWNDGHYNMVEF 476 (552)
T ss_pred ccccccccHHHhhHhhcCC---------CcEEEEEechHH--hhhHHHHHHHHHhCCC------eEEEEEECCccchHHH
Confidence 3467778889998887532 357999999998 55556655544 899 998888886 343110
Q ss_pred -----CCc----ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 493 -----PRF----SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 493 -----~~~----~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
... .....+...+|++||+++++|. +++++..+.+.|+ +.++|+|||+.+-|
T Consensus 477 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~liev~~~~ 537 (552)
T PRK08617 477 QEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREAL----ATDGPVVIDIPVDY 537 (552)
T ss_pred HHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCcEEEEEEecc
Confidence 000 0123567889999999999887 6888888888776 45689999999854
No 122
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.07 E-value=1.3e-05 Score=97.00 Aligned_cols=113 Identities=19% Similarity=0.156 Sum_probs=81.6
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|.|+|++.|... .-+|++.|||+| +=...|--... +|| +++||.||+ ||+...
T Consensus 421 g~mG~glpaaiGa~la~p~---------~~vv~i~GDG~f--~m~~~EL~Ta~r~~lp------v~~vV~NN~~y~~i~~ 483 (572)
T PRK08979 421 GTMGFGLPAAMGVKFAMPD---------ETVVCVTGDGSI--QMNIQELSTALQYDIP------VKIINLNNRFLGMVKQ 483 (572)
T ss_pred ccccchhhHHHhhhhhCCC---------CeEEEEEcchHh--hccHHHHHHHHHcCCC------eEEEEEeCCccHHHHH
Confidence 4678889999999998643 247899999998 44445544443 899 998888886 554220
Q ss_pred ----------CCc-ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 493 ----------PRF-SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 493 ----------~~~-~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
... -....+...+|++||+++++|+ +++++..+.+.|++. -++|+|||+.+=+
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 547 (572)
T PRK08979 484 WQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM---KDRLVFVDINVDE 547 (572)
T ss_pred HHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 000 0122467889999999999987 788888888888752 2689999998843
No 123
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.04 E-value=1.4e-05 Score=96.54 Aligned_cols=113 Identities=19% Similarity=0.094 Sum_probs=81.3
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT- 491 (968)
+.+|..+|.|+|++.|... .-+|++.|||+| +=...|-.... +|| +++||.||. ||+--
T Consensus 423 gsmG~glpaAiGa~la~p~---------r~Vv~i~GDG~f--~m~~~eL~Ta~r~~lp------v~ivV~NN~~y~~i~~ 485 (574)
T PRK06466 423 GTMGFGLPAAMGVKLAFPD---------QDVACVTGEGSI--QMNIQELSTCLQYGLP------VKIINLNNGALGMVRQ 485 (574)
T ss_pred chhhchHHHHHHHHHhCCC---------CeEEEEEcchhh--hccHHHHHHHHHhCCC------eEEEEEeCCccHHHHH
Confidence 4567888999999988643 248999999998 44445544443 899 999998886 55321
Q ss_pred --------CCCcc--cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 --------DPRFS--RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 --------~~~~~--rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
+.... ....+...+|++||+++++|+ +++++..+.+.|++. -++|+|||+.+=+
T Consensus 486 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 486 WQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred HHHHhcCCceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 00000 112467889999999999995 788988888888752 2689999999843
No 124
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=98.02 E-value=1.6e-05 Score=95.92 Aligned_cols=112 Identities=18% Similarity=0.153 Sum_probs=82.4
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|.|+|++.|... .-+|++.|||+| +=...|=..+. +|| +++||.||+ ||+...
T Consensus 421 g~mG~glpaAiGa~la~p~---------~~vv~i~GDG~f--~m~~~eL~Ta~~~~l~------i~ivV~NN~~yg~i~~ 483 (572)
T PRK06456 421 GTMGFGLPAAMGAKLARPD---------KVVVDLDGDGSF--LMTGTNLATAVDEHIP------VISVIFDNRTLGLVRQ 483 (572)
T ss_pred ccccchhHHHHHHHHhCCC---------CeEEEEEccchH--hcchHHHHHHHHhCCC------eEEEEEECCchHHHHH
Confidence 5677888999999988643 358999999998 44445544444 899 888888886 665321
Q ss_pred ---------CC--cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 493 ---------PR--FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 493 ---------~~--~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
.. +.....+...+|++||+.+++|. +++++..+.++|++ -++|+|||+.+-+
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 546 (572)
T PRK06456 484 VQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIK----EDIPAVIRVPVDK 546 (572)
T ss_pred HHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 00 00023567899999999999985 78888888887764 4789999999855
No 125
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.02 E-value=1.3e-05 Score=96.20 Aligned_cols=110 Identities=18% Similarity=0.084 Sum_probs=81.0
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|-|+|++.|.. + . +|++.|||+| |-..+|=-.++ +|| +++||.||+ ||+-..
T Consensus 403 g~mG~glpaaiGa~lA~~--------~-r-~v~i~GDG~f--~m~~~EL~Ta~r~~lp------v~~vV~NN~~y~~~~~ 464 (535)
T TIGR03394 403 AGMGFGVPAGIGAQCTSG--------K-R-ILTLVGDGAF--QMTGWELGNCRRLGID------PIVILFNNASWEMLRV 464 (535)
T ss_pred chhhhHHHHHHHHHhCCC--------C-C-eEEEEeChHH--HhHHHHHHHHHHcCCC------cEEEEEECCccceeeh
Confidence 467888899999988842 1 2 3668999998 67777766666 899 888888885 564221
Q ss_pred CC-----cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 493 PR-----FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 493 ~~-----~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
.. ......+...+|++||+++++|+ +++++..+.++|++ ..++|+|||+.+
T Consensus 465 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~~p~lIev~i 520 (535)
T TIGR03394 465 FQPESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFA---TRGRFQLIEAML 520 (535)
T ss_pred hccCCCcccCCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHh---cCCCeEEEEEEC
Confidence 00 11123567889999999999998 78888888888875 335689999976
No 126
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=98.02 E-value=2.2e-05 Score=94.54 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=79.6
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccc--
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFT-- 490 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~T-- 490 (968)
+.+|...|-|+|++.|. . .-+|++.|||+| +=...|--.++ +|| +++||.||+ |-..
T Consensus 417 gsmG~~lpaaiGaala~-~---------~~vv~i~GDGsf--~m~~~EL~Ta~r~~l~------v~~vV~NN~~~~~~~~ 478 (554)
T TIGR03254 417 GVMGIGMGYAIAAAVET-G---------KPVVALEGDSAF--GFSGMEVETICRYNLP------VCVVIFNNGGIYRGDD 478 (554)
T ss_pred CcCCchHHHHHHHHhcC-C---------CcEEEEEcCchh--cccHHHHHHHHHcCCC------EEEEEEeChhhhhhhh
Confidence 45677789999998873 2 238999999998 55566655555 999 999999997 3111
Q ss_pred ----c-C-C-CcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 491 ----T-D-P-RFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 491 ----T-~-~-~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
. . . .+-....+...+|++||+++++|. +++++..+.++|++ .++|+|||+.+
T Consensus 479 ~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~i 537 (554)
T TIGR03254 479 VNVVGADPAPTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVI 537 (554)
T ss_pred hhhcCCCCCccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEE
Confidence 0 0 0 010023456889999999999995 79999888888864 46899999987
No 127
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=98.01 E-value=1.2e-05 Score=89.27 Aligned_cols=110 Identities=20% Similarity=0.170 Sum_probs=74.2
Q ss_pred ccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccCCC
Q psy8742 418 LEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTDPR 494 (968)
Q Consensus 418 Lea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~~~ 494 (968)
+|...|+|+|+++|... .-+|++.|||+|.+-| ..|-...+ ++| +++||.||+ ||+|.-..
T Consensus 55 mG~alPaAiGaklA~Pd---------~~VVai~GDG~f~~mg-~~eL~tA~r~nl~------I~vIVlNN~~yGmt~gQ~ 118 (287)
T TIGR02177 55 HGRALPVATGIKLANPH---------LKVIVVGGDGDLYGIG-GNHFVAAGRRNVD------ITVIVHDNQVYGLTKGQA 118 (287)
T ss_pred cccHHHHHHHHHHHCCC---------CcEEEEeCchHHHhcc-HHHHHHHHHhCcC------eEEEEEECHHHHhhhccc
Confidence 37888999999998643 3589999999963333 44555554 899 999999997 47654111
Q ss_pred c--------cccc--------cc--HhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 495 F--------SRSS--------SY--CTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 495 ~--------~rss--------~~--~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
. ...+ .. ...+|.++++.... ...+++.+..+.++|++ .+||+|||+.+
T Consensus 119 sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~-~~~~~~eL~~ai~~Al~----~~GpslIeV~~ 185 (287)
T TIGR02177 119 SPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARG-FSGDVAHLKEIIKEAIN----HKGYALVDILQ 185 (287)
T ss_pred ccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEE-ecCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 0000 01 23455566655443 33799999999999884 57899999974
No 128
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=98.01 E-value=2e-05 Score=95.20 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=79.5
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCCccc--cc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQIGF--TT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNqig~--TT 491 (968)
+.+|..+|.|+|++.|. . .-+|++.|||+| +=...|-..++ +|| +++||.||+ |+ ..
T Consensus 424 gsmG~glpaaiGa~la~-~---------~~vv~i~GDG~f--~m~~~EL~Ta~r~~lp------i~~vV~NN~-~~~~~~ 484 (569)
T PRK09259 424 GVMGIGMGYAIAAAVET-G---------KPVVAIEGDSAF--GFSGMEVETICRYNLP------VTVVIFNNG-GIYRGD 484 (569)
T ss_pred ccccccHHHHHHHHhcC-C---------CcEEEEecCccc--cccHHHHHHHHHcCCC------EEEEEEeCh-hHHHHH
Confidence 34677789999999883 2 238999999998 55556644444 899 999999998 22 11
Q ss_pred --------CC--CcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 492 --------DP--RFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 492 --------~~--~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
.. ..-....+.+.+|++||+++++|+ +++++..+.++|++ .++|+|||+.+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~i 545 (569)
T PRK09259 485 DVNLSGAGDPSPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINVVI 545 (569)
T ss_pred HHHhhcCCCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEE
Confidence 00 000123567889999999999996 78888888888874 47899999997
No 129
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=97.99 E-value=2.3e-05 Score=94.99 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=79.8
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+.+|...|.|+|+++|... .-+|++.|||+| +=...|-..++ +|| +++||.||+ ||+...
T Consensus 419 gsmG~~lpaaiGa~la~p~---------~~Vv~i~GDGsf--~m~~~eL~Ta~~~~lp------v~~vV~NN~~~g~~~~ 481 (586)
T PRK06276 419 GTMGFGFPAAIGAKVAKPD---------ANVIAITGDGGF--LMNSQELATIAEYDIP------VVICIFDNRTLGMVYQ 481 (586)
T ss_pred cccccchhHHHhhhhhcCC---------CcEEEEEcchHh--hccHHHHHHHHHhCCC------eEEEEEeCCchHHHHH
Confidence 3467778999999888532 237999999998 44455544444 899 999988887 554310
Q ss_pred ---------CCcc--cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 493 ---------PRFS--RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 493 ---------~~~~--rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
.... ....+...+|+++|+.++.|+ +++++..+.++|++ .++|+|||+.+
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i 542 (586)
T PRK06276 482 WQNLYYGKRQSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK----SGEPYLLDIII 542 (586)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 0001 012467889999999999985 78999888888874 47899999998
No 130
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=97.99 E-value=2.2e-05 Score=94.30 Aligned_cols=112 Identities=16% Similarity=0.143 Sum_probs=80.3
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT- 491 (968)
+.+|...|.|+|+++|... .-+|++.|||+| +-...|-...+ ++| +++||.||+ ||+-.
T Consensus 401 g~mG~glpaAiGa~la~p~---------~~vv~i~GDG~f--~~~~~eL~ta~~~~l~------v~ivV~NN~~~~~~~~ 463 (548)
T PRK08978 401 GTMGFGLPAAIGAQVARPD---------DTVICVSGDGSF--MMNVQELGTIKRKQLP------VKIVLLDNQRLGMVRQ 463 (548)
T ss_pred hhhhchHHHHHHHHHhCCC---------CcEEEEEccchh--hccHHHHHHHHHhCCC------eEEEEEeCCccHHHHH
Confidence 4567778999999888532 247899999998 44455544444 899 888888885 45321
Q ss_pred ------C-CCccc---ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 ------D-PRFSR---SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 ------~-~~~~r---ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
. ..... ...+...+|++||+++++|. +++++..|.+.|++ .++|+|||+.+-+
T Consensus 464 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 464 WQQLFFDERYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred HHHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 00000 12467889999999999995 78888888888764 5789999999854
No 131
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=97.98 E-value=1e-05 Score=97.64 Aligned_cols=108 Identities=18% Similarity=0.124 Sum_probs=76.2
Q ss_pred CccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccc-cC
Q psy8742 417 HLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFT-TD 492 (968)
Q Consensus 417 hLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~T-T~ 492 (968)
.+|...|-|+|+++| .. .-+|++.|||+|. =...|-...+ +|| +++||.||+ ||+- .-
T Consensus 426 ~~G~~lpaaiGaala-~~---------~~vv~i~GDGsf~--~~~~eL~Ta~r~~l~------i~ivVlNN~g~~~~~~~ 487 (568)
T PRK07449 426 GIDGLLSTAAGVARA-SA---------KPTVALIGDLSFL--HDLNGLLLLKQVPAP------LTIVVVNNNGGGIFSLL 487 (568)
T ss_pred chhhHHHHHHHHHhc-CC---------CCEEEEechHHhh--cCcHHHHhhcccCCC------eEEEEEECCCCccccCC
Confidence 356667899999988 32 1279999999983 2234444444 899 999999997 5531 10
Q ss_pred C---C-----c---ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 493 P---R-----F---SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 493 ~---~-----~---~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
. . + .-...+...+|++||+++++|+ +++++..+.++|+ +.++|+|||+.+
T Consensus 488 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~----~~~~p~lIev~i 548 (568)
T PRK07449 488 PQPEEEPVFERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADAL----PTPGLTVIEVKT 548 (568)
T ss_pred CCCCCcchhhHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHh----cCCCCEEEEEeC
Confidence 0 0 0 0112467889999999999885 7899888888886 347899999976
No 132
>PRK08611 pyruvate oxidase; Provisional
Probab=97.98 E-value=2.2e-05 Score=95.03 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=80.8
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT- 491 (968)
+.+|...|.|+|+++|... .-+|++.|||+| +=...|=...+ +|| +|+||.||. ||+--
T Consensus 408 g~mG~glpaaiGa~la~p~---------~~Vv~i~GDGsf--~m~~~eL~Ta~r~~l~------~iivV~NN~~~g~i~~ 470 (576)
T PRK08611 408 GTMGCGLPGAIAAKIAFPD---------RQAIAICGDGGF--SMVMQDFVTAVKYKLP------IVVVVLNNQQLAFIKY 470 (576)
T ss_pred hhhhhhHHHHHHHHHhCCC---------CcEEEEEcccHH--hhhHHHHHHHHHhCCC------eEEEEEeCCcchHHHH
Confidence 4567778899999887533 238999999998 44455555555 899 888888885 55421
Q ss_pred --------CCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 --------DPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 --------~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
.........+...+|++||+++++|. +++++..+.++|++ .++|+|||+.+-+
T Consensus 471 ~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~vd~ 531 (576)
T PRK08611 471 EQQAAGELEYAIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALA----QDKPVIIDVYVDP 531 (576)
T ss_pred HHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 00011123567889999999999995 78888888887764 4789999999854
No 133
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=97.97 E-value=2.3e-05 Score=87.07 Aligned_cols=110 Identities=16% Similarity=0.114 Sum_probs=78.6
Q ss_pred ccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccCC-
Q psy8742 418 LEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTDP- 493 (968)
Q Consensus 418 Lea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~~- 493 (968)
+|...|.|+|+++|... .-+|++.|||++.+-| ..|-...+ ++| +++||.||+ ||++...
T Consensus 71 mG~alpaAiGaklA~Pd---------~~VV~i~GDG~~f~mg-~~eL~tA~r~nl~------i~vIV~NN~~yGmt~~q~ 134 (286)
T PRK11867 71 HGRALAIATGLKLANPD---------LTVIVVTGDGDALAIG-GNHFIHALRRNID------ITYILFNNQIYGLTKGQY 134 (286)
T ss_pred hhcHHHHHHHHHHhCCC---------CcEEEEeCccHHHhCC-HHHHHHHHHhCCC------cEEEEEeCHHHhhhcCcc
Confidence 47788999999998543 3589999999622233 55666666 899 999999986 5665311
Q ss_pred -----Cccc----------ccccHhHhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q psy8742 494 -----RFSR----------SSSYCTDVARVVNAPIF-HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIV 547 (968)
Q Consensus 494 -----~~~r----------ss~~~td~Ak~~giP~~-hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~ 547 (968)
...+ .......+|.++|+..+ ++.-.+++.+..+.++|++ .++|+|||+.
T Consensus 135 s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~ 200 (286)
T PRK11867 135 SPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEIL 200 (286)
T ss_pred CCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEe
Confidence 0000 01346778999999876 4566789999999998874 5789999996
No 134
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=97.96 E-value=2.3e-05 Score=95.60 Aligned_cols=112 Identities=19% Similarity=0.137 Sum_probs=79.7
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT- 491 (968)
+.+|...|-|+|+++|... .-+||+.|||+| +=...|-...+ +|| +++||.||+ ||+--
T Consensus 447 G~mG~glpaaiGa~la~p~---------~~Vv~i~GDG~f--~m~~~eL~Ta~~~~lp------v~ivV~NN~~~g~i~~ 509 (612)
T PRK07789 447 GTMGYAVPAAMGAKVGRPD---------KEVWAIDGDGCF--QMTNQELATCAIEGIP------IKVALINNGNLGMVRQ 509 (612)
T ss_pred ccccchhhhHHhhhccCCC---------CcEEEEEcchhh--hccHHHHHHHHHcCCC------eEEEEEECCchHHHHH
Confidence 4567778999999888533 247899999998 33344443333 899 888888886 66421
Q ss_pred --------CCC--c-cc---ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 492 --------DPR--F-SR---SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 492 --------~~~--~-~r---ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
... + .. ...+...+|+++|+++++|+ +++++..+.+.|++. -++|+|||+.+-
T Consensus 510 ~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~ 576 (612)
T PRK07789 510 WQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVG 576 (612)
T ss_pred HHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEEC
Confidence 000 0 00 12467889999999999996 799999999998864 258999999984
No 135
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=97.94 E-value=2.2e-05 Score=94.34 Aligned_cols=110 Identities=19% Similarity=0.164 Sum_probs=79.8
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT- 491 (968)
+.+|...|-|+|++.|... .-+||+.|||+| |=..+|=...+ +|| +++||.||+ ||+-.
T Consensus 404 g~mG~glpaaiGa~la~p~---------~~vv~i~GDG~f--~m~~~EL~Ta~~~~lp------i~~vV~NN~~y~~i~~ 466 (539)
T TIGR03393 404 GSIGYTLPAAFGAQTACPN---------RRVILLIGDGSA--QLTIQELGSMLRDKQH------PIILVLNNEGYTVERA 466 (539)
T ss_pred hhhhhHHHHHHHHHhcCCC---------CCeEEEEcCcHH--HhHHHHHHHHHHcCCC------CEEEEEeCCceEEEEe
Confidence 5678888999999988543 247999999998 55556655555 899 888888885 55321
Q ss_pred --C---CCcccccccHhHhhhhcCCc----EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 492 --D---PRFSRSSSYCTDVARVVNAP----IFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 492 --~---~~~~rss~~~td~Ak~~giP----~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
. ........+...+|++||++ +++|. +++++..+.+.|+ +.++|+|||+.+
T Consensus 467 ~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~----~~~~p~liev~i 526 (539)
T TIGR03393 467 IHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVA----AHERLSLIEVVL 526 (539)
T ss_pred ecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHh----ccCCeEEEEEEc
Confidence 0 00011235678899999996 78885 7888888888776 457899999987
No 136
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=97.93 E-value=3.4e-05 Score=93.07 Aligned_cols=112 Identities=22% Similarity=0.207 Sum_probs=80.7
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT- 491 (968)
+.+|...|.|+|++.|... .-+|++.|||+| +=...|=...+ +|| +++||.||. ||+-.
T Consensus 414 g~mG~glpaaiGa~la~p~---------~~Vv~i~GDG~f--~m~~~eL~Ta~~~~l~------i~~vV~NN~~y~~i~~ 476 (561)
T PRK06048 414 GTMGYGFPAAIGAKVGKPD---------KTVIDIAGDGSF--QMNSQELATAVQNDIP------VIVAILNNGYLGMVRQ 476 (561)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEeCchh--hccHHHHHHHHHcCCC------eEEEEEECCccHHHHH
Confidence 3567778999999888533 247899999998 44455555554 899 888888885 55321
Q ss_pred --------CCCccc--ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 --------DPRFSR--SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 --------~~~~~r--ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
...... ...+...+|+++|+++++|+ +++++..+.++|++ .++|+|||+.+=+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~----~~~p~liev~~~~ 539 (561)
T PRK06048 477 WQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA----SDRPVVIDFIVEC 539 (561)
T ss_pred HHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 000011 23567889999999999987 68888888888873 4789999999843
No 137
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=97.90 E-value=4.5e-05 Score=92.78 Aligned_cols=112 Identities=21% Similarity=0.177 Sum_probs=79.5
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcch-HHHHHHhC-------CCCCCCcccEEEEEEcCC-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGV-VFETFHLS-------DLPDYTTHGTIHIVVNNQ- 486 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGv-v~EaLNlA-------~LP~y~~gGvIfVVeNNq- 486 (968)
+.+|...|.|+|+++|... .-+|++.|||+| |-. ..|-..++ +|| +++||.||+
T Consensus 415 g~mG~glpaaiGa~la~p~---------~~Vv~i~GDG~f--~m~~~~EL~Ta~r~~~~~~~lp------viivV~NN~~ 477 (597)
T PRK08273 415 ATMGPAVPYAIAAKFAHPD---------RPVIALVGDGAM--QMNGMAELITVAKYWRQWSDPR------LIVLVLNNRD 477 (597)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchhH--hccchHHHHHHHHHhhcccCCC------EEEEEEeCCc
Confidence 4568888999999988643 238999999998 322 23333332 589 999999996
Q ss_pred ccccc---------CCC--c-ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 487 IGFTT---------DPR--F-SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 487 ig~TT---------~~~--~-~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
||+-. +.. . .....+.+.+|++||+++++|. +++++..+.+.|++ .++|+|||+.+-+
T Consensus 478 ~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~~ 547 (597)
T PRK08273 478 LNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTDP 547 (597)
T ss_pred chHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 54321 100 0 0122457889999999999998 78888888888874 4789999999843
No 138
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.89 E-value=4.2e-05 Score=84.70 Aligned_cols=110 Identities=24% Similarity=0.228 Sum_probs=80.5
Q ss_pred ccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCc-cccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccCC
Q psy8742 418 LEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDA-AFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTDP 493 (968)
Q Consensus 418 Lea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDg-AfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~~ 493 (968)
+|...|+|+|+.+|... .-+|++.||| +| .-| ..|-.+.+ ++| +++||.||+ ||+|--.
T Consensus 61 ~G~alp~A~GaklA~Pd---------~~VV~i~GDG~~f-~ig-~~eL~tA~rrn~~------i~vIV~nN~~ygmtggQ 123 (279)
T PRK11866 61 HGRVLPIATGVKWANPK---------LTVIGYGGDGDGY-GIG-LGHLPHAARRNVD------ITYIVSNNQVYGLTTGQ 123 (279)
T ss_pred cccHHHHHHHHHHHCCC---------CcEEEEECChHHH-Hcc-HHHHHHHHHHCcC------cEEEEEEChhhhhhccc
Confidence 38888999999999543 2489999999 44 333 55666665 899 999999996 4665311
Q ss_pred Cc------ccc--c--------ccHhHhhhhcCCcEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 494 RF------SRS--S--------SYCTDVARVVNAPIFH-VNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 494 ~~------~rs--s--------~~~td~Ak~~giP~~h-VDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
.. ++. + .++.++|+++|++.+. ....|++.+..+.++|++ .+||.|||+.+
T Consensus 124 ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 124 ASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred ccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 00 010 1 2677999999999664 466899999999998884 57899999974
No 139
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=97.82 E-value=0.00025 Score=85.01 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=68.9
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC-----CCCCCCcccEEEEEEcCCcccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS-----DLPDYTTHGTIHIVVNNQIGFT 490 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA-----~LP~y~~gGvIfVVeNNqig~T 490 (968)
..||....+|.|+|+ +..+.++.|+.|||. +-.| .+-++ -+--=+.|-++=|..=|+|-|+
T Consensus 153 GeLGy~l~ha~gAa~---------d~Pdli~~~vvGDGe-aetg----platsWhs~kf~np~~dGavLPIL~lNGykI~ 218 (793)
T COG3957 153 GELGYALSHAYGAAF---------DNPDLIVACVVGDGE-AETG----PLATSWHSNKFLNPARDGAVLPILHLNGYKIE 218 (793)
T ss_pred cchhHHHHHHHHhhc---------CCCCcEEEEEecccc-cccC----ccccccccccccCccccCceeeEEEecceecc
Confidence 456666677777775 455679999999993 2222 22233 1211244556667777999999
Q ss_pred cCCCccccc-ccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHH
Q psy8742 491 TDPRFSRSS-SYCTDVARVVNAPIFHVNSDDPEAVIHVCNLA 531 (968)
Q Consensus 491 T~~~~~rss-~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~A 531 (968)
-++..+|-+ ..+...-++||..-+-|+|.||..+.+++...
T Consensus 219 npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~mAa~ 260 (793)
T COG3957 219 NPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLMAAV 260 (793)
T ss_pred CceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhHHHH
Confidence 887777665 23566778999999999999999955554433
No 140
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=97.79 E-value=5.5e-05 Score=91.47 Aligned_cols=111 Identities=19% Similarity=0.202 Sum_probs=77.3
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-ccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT- 491 (968)
+.+|...|-|+|+++|... .-+|++.|||+| +=...|--... +|| +++||.||+ ||+-.
T Consensus 418 g~mG~glpaaiGa~lA~p~---------~~Vv~i~GDG~f--~m~~~eL~Ta~~~~l~------i~~vV~NN~~y~~i~~ 480 (566)
T PRK07282 418 GTMGFGIPAAIGAKIANPD---------KEVILFVGDGGF--QMTNQELAILNIYKVP------IKVVMLNNHSLGMVRQ 480 (566)
T ss_pred ccccchhhHhheeheecCC---------CcEEEEEcchhh--hccHHHHHHHHHhCCC------eEEEEEeCCCchHHHH
Confidence 5678889999999988643 237899999998 44444433333 899 888888886 55411
Q ss_pred --------CC-Cccc-ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 --------DP-RFSR-SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 --------~~-~~~r-ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
.. .... ...+.+.+|++||+.+++|. +++++..+.+ ++ .-++|+|||+.+=+
T Consensus 481 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~----~~~~p~lIeV~v~~ 542 (566)
T PRK07282 481 WQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VI----TEDVPMLIEVDISR 542 (566)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hh----cCCCCEEEEEEeCC
Confidence 00 0111 23567889999999999996 6777766664 33 23789999998844
No 141
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=97.62 E-value=0.00019 Score=87.40 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=81.6
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
..+|...|.|+|+++|... .-+|++.|||+|. .....|-.+.. ++| +++||.||+ ||++-.
T Consensus 403 ~~mG~~~~~AiGa~~a~p~---------~~Vv~i~GDG~f~-~~g~~eL~tav~~~~~------i~~vVlnN~~~g~~~~ 466 (595)
T TIGR03336 403 LCMGASIGVASGLSKAGEK---------QRIVAFIGDSTFF-HTGIPGLINAVYNKAN------ITVVILDNRITAMTGH 466 (595)
T ss_pred eccCchHHHHhhhhhcCCC---------CCEEEEeccchhh-hcCHHHHHHHHHcCCC------eEEEEEcCcceeccCC
Confidence 4678999999999988543 2389999999983 22255656555 899 999999985 566531
Q ss_pred CCc---c-------cccccHhHhhhhcCCcEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 493 PRF---S-------RSSSYCTDVARVVNAPIFHV-NSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 493 ~~~---~-------rss~~~td~Ak~~giP~~hV-DGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
... . ....+...+|+++|++.++| |-.|.+++..+.++|++ ..+|++|++..
T Consensus 467 q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 467 QPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred CCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEcc
Confidence 100 0 01246789999999999998 44677777888888874 46899999853
No 142
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=97.60 E-value=0.00028 Score=70.04 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=87.4
Q ss_pred CcEeecCCcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cC--CCCCc
Q psy8742 752 PYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GL--EGMGP 828 (968)
Q Consensus 752 ~~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~--~g~Gp 828 (968)
+.+.++.+.+|.+..|++.||+..+.++++ ..++|.|+..+ ++++.+.. ....|++++..+ |. .+.+.
T Consensus 34 ~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~--~~~~gpg~~~~---~~~l~~a~----~~~~Pvl~i~~~~~~~~~~~~~ 104 (154)
T cd06586 34 DKRIIDTVIHELGAAGAAAGYARAGGPPVV--IVTSGTGLLNA---INGLADAA----AEHLPVVFLIGARGISAQAKQT 104 (154)
T ss_pred CCceEEeeCCHHHHHHHHHHHHHhhCCEEE--EEcCCCcHHHH---HHHHHHHH----hcCCCEEEEeCCCChhhhccCc
Confidence 457889999999999999999999877777 89999999888 99988653 235899999865 43 24555
Q ss_pred ccCCChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhc--CCCCcEEEEecc
Q psy8742 829 EHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIAL--PFRKPLVLMTPK 901 (968)
Q Consensus 829 eHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~--~~r~Pli~~~pK 901 (968)
.|+.. ...++ ..+| ++.+..| ++.+....|+++++. ..+.|+++..|+
T Consensus 105 ~q~~~-~~~~~-------~~~~----------------~~~~~~~-~~~~~~~~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 105 FQSMF-DLGMY-------RSIP----------------EANISSP-SPAELPAGIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred ccccC-HHHHH-------HHhh----------------heEEEeC-CHHHHHHHHHHHHHHHhcCCCCEEEEccC
Confidence 66655 55666 4566 7777765 567778888888762 226899998774
No 143
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=97.39 E-value=0.00038 Score=93.60 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=79.1
Q ss_pred CCccc--cCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC----CCCCCCcccEEEEEEcCCc-c
Q psy8742 416 SHLEA--VDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS----DLPDYTTHGTIHIVVNNQI-G 488 (968)
Q Consensus 416 ShLea--~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA----~LP~y~~gGvIfVVeNNqi-g 488 (968)
+.+|. .+|.|+|++.|. . .-+||+.|||+| +=...|=..++ +|| +++||.||+- |
T Consensus 759 G~mG~~G~lpaAIGaala~-~---------r~Vv~i~GDGsF--~m~~~EL~Ta~r~~~~lp------i~iVV~NN~ggg 820 (1655)
T PLN02980 759 GASGIDGLLSTAIGFAVGC-N---------KRVLCVVGDISF--LHDTNGLSILSQRIARKP------MTILVINNHGGA 820 (1655)
T ss_pred CccchhhhHHHHHHHhhcC-C---------CCEEEEEehHHH--HhhhhHHHHhhcccCCCC------EEEEEEeCCCcH
Confidence 33444 589999998875 2 237999999998 55566655544 589 9999999984 3
Q ss_pred cc-cCC----Cc-----c----cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 489 FT-TDP----RF-----S----RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 489 ~T-T~~----~~-----~----rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
+- ..+ .. . -...+...+|++||+++++|+ +++++..|.+.|. +.++|+|||+.|-
T Consensus 821 i~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~----~~~~p~lIEV~t~ 889 (1655)
T PLN02980 821 IFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQ----VEQMDCVVEVESS 889 (1655)
T ss_pred hhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhh----ccCCCEEEEEecC
Confidence 32 110 00 0 012467889999999999998 7888888877776 4588999999994
No 144
>KOG1185|consensus
Probab=97.14 E-value=0.0029 Score=73.52 Aligned_cols=110 Identities=24% Similarity=0.268 Sum_probs=82.0
Q ss_pred chhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcC-C-cccccCCCcccc--
Q psy8742 423 PVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNN-Q-IGFTTDPRFSRS-- 498 (968)
Q Consensus 423 PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNN-q-ig~TT~~~~~rs-- 498 (968)
.|..|.|.|.+.. ..+.-++|+.||+||-=-+.=.||+---+|| +|.||.|| + ||+.+....+.+
T Consensus 433 GVG~Gfalaaa~~-----~P~~~V~~veGDsaFGfSaME~ET~vR~~Lp------vv~vV~NN~Giyg~d~~~~~~I~e~ 501 (571)
T KOG1185|consen 433 GVGLGFALAAALA-----APDRKVVCVEGDSAFGFSAMELETFVRYKLP------VVIVVGNNNGIYGLDDDGWKQISEQ 501 (571)
T ss_pred ccchhHHHHHHhh-----CCCCeEEEEecCcccCcchhhHHHHHHhcCC------eEEEEecCCcccccCcccHHHHhhc
Confidence 4667777777773 3456799999999986667778888777999 99999976 3 355443322221
Q ss_pred -------------cccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 499 -------------SSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 499 -------------s~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
...-..++|++|..++.|+ .++.+..+++.|.. ...+|++|.++-
T Consensus 502 ~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q---~~~~psvINVlI 559 (571)
T KOG1185|consen 502 DPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ---DTDKPSVINVLI 559 (571)
T ss_pred CcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHh---cCCCCeEEEEEe
Confidence 1123578999999999999 89999999998874 677999999864
No 145
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=96.87 E-value=0.0084 Score=68.04 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=71.3
Q ss_pred CccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCC-CCCCCcccEEEEEEcCCcccccCCCc
Q psy8742 417 HLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSD-LPDYTTHGTIHIVVNNQIGFTTDPRF 495 (968)
Q Consensus 417 hLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~-LP~y~~gGvIfVVeNNqig~TT~~~~ 495 (968)
-||....+|.|+++ +..+-+++|+.|||. +..|-..-+-...+ |.-=+.|-|+=|..=|++-|+-|+-.
T Consensus 141 ELGYaLshA~GA~~---------DnPdliv~~vvGDGE-aETGplA~sWh~~kflnP~~dGaVLPILhLNG~KI~~pTil 210 (379)
T PF09364_consen 141 ELGYALSHAFGAVF---------DNPDLIVACVVGDGE-AETGPLAASWHSNKFLNPATDGAVLPILHLNGYKISNPTIL 210 (379)
T ss_dssp STS-HHHHHHHHHT---------T-TT-EEEEEEETTG-GGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSSB-HH
T ss_pred chhhHHHHHhhccc---------CCCCeEEEEEecCCc-ccCCcccccccccceeCcccCceeeceEEecCccccCCeEe
Confidence 45666677777776 345579999999999 78887666654321 22234455666666799999988766
Q ss_pred cccc-ccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHH
Q psy8742 496 SRSS-SYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEW 534 (968)
Q Consensus 496 ~rss-~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~ 534 (968)
+|-+ ..+.+.-++||...+.|+|+||+++...+..|++.
T Consensus 211 ~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~ 250 (379)
T PF09364_consen 211 ARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDW 250 (379)
T ss_dssp HHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHH
T ss_pred eecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 5554 44677788999999999999999999887776654
No 146
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=96.45 E-value=0.0095 Score=70.13 Aligned_cols=114 Identities=17% Similarity=0.089 Sum_probs=75.0
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCCcccccC-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQIGFTTD- 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNqig~TT~- 492 (968)
.|+|-..|-++|++.|.+.+ -+|+|.||||+ |=.++|-=.|- +|| .+|||+.|++|-|---
T Consensus 411 GSIG~t~pAalGa~~A~~dr---------R~IL~iGDGs~--QlTvQEiStmiR~gl~-----p~ifvlNN~GYTIEr~I 474 (557)
T COG3961 411 GSIGYTLPAALGAALAAPDR---------RVILFIGDGSL--QLTVQEISTMIRWGLK-----PIIFVLNNDGYTIERAI 474 (557)
T ss_pred hhcccccHhhhhhhhcCCCc---------cEEEEEcCchh--hhhHHHHHHHHHcCCC-----cEEEEEcCCCcEEEehh
Confidence 56788899999999998874 38999999996 99999987777 666 3778777777744322
Q ss_pred ------CCcccccccHhHhhhhcCCcEEEE--eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 493 ------PRFSRSSSYCTDVARVVNAPIFHV--NSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 493 ------~~~~rss~~~td~Ak~~giP~~hV--DGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
..+-. +..-+++-++||+--.+. ...-.+....+...+.+ ...++.|||++.-
T Consensus 475 Hg~~~~YNdI~-~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~i~lIEv~lp 535 (557)
T COG3961 475 HGPTAPYNDIQ-SWDYTALPEAFGAKNGEAKFRATTGEELALALDVAFA---NNDRIRLIEVMLP 535 (557)
T ss_pred cCCCcCccccc-ccchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhc---CCCceEEEEEecC
Confidence 22221 244567777787653322 22233333344444432 3447899999863
No 147
>KOG4166|consensus
Probab=95.64 E-value=0.018 Score=66.04 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=82.0
Q ss_pred ccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCc-ccccCCCc-
Q psy8742 418 LEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQI-GFTTDPRF- 495 (968)
Q Consensus 418 Lea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqi-g~TT~~~~- 495 (968)
.|.+.|.|+|+.-|.-. .++|=+-|||+|.=.+.=..+.--.++| +-.+|.||+- |+-|...+
T Consensus 526 MGfGLPAAIGAsVA~P~---------~iViDIDGDaSF~Mt~~ELat~rq~~~P------VKiLiLNNeeqGMVtQWq~l 590 (675)
T KOG4166|consen 526 MGFGLPAAIGASVANPD---------AIVIDIDGDASFIMTVQELATIRQENLP------VKILILNNEEQGMVTQWQDL 590 (675)
T ss_pred cccCcchhhcccccCcc---------cEEEeccCCceeeeehHhhhhhhhcCCc------eEEEEecchhhhhHHHHHHH
Confidence 36778999998877544 6999999999996555444455555999 9999999973 66663211
Q ss_pred ---cc------ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 496 ---SR------SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 496 ---~r------ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
.| -.+..-.+|.+.|++..+|- --|...+.+++-+ ..+||||+|++|-
T Consensus 591 FYe~rysHThQ~nPnf~klA~AmGikalRV~--K~edL~~k~kefl----sTkGPvLleV~v~ 647 (675)
T KOG4166|consen 591 FYEARYSHTHQENPNFLKLAAAMGIKALRVT--KKEDLREKIKEFL----STKGPVLLEVIVP 647 (675)
T ss_pred HHHhhhccccccCccHHHHHHhcCCchheee--hHHHHHHHHHHHh----CCCCCeEEEEEcc
Confidence 11 12556788999999999997 4566667777666 6799999999884
No 148
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=95.16 E-value=0.22 Score=55.96 Aligned_cols=147 Identities=22% Similarity=0.176 Sum_probs=93.8
Q ss_pred cccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC-CCCCCCcccEEEEEEcCCc-ccccCCCcc
Q psy8742 419 EAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS-DLPDYTTHGTIHIVVNNQI-GFTTDPRFS 496 (968)
Q Consensus 419 ea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA-~LP~y~~gGvIfVVeNNqi-g~TT~~~~~ 496 (968)
|-..|+|.|..+|.+.. -+|++-|||...+-|.-|=.=.+. +.- +.+||.||++ |.|.-....
T Consensus 73 gra~a~atGik~A~~~l---------~Viv~gGDG~~~dIG~~~l~h~~~Rn~d------it~iv~DNevYgnTggQ~S~ 137 (294)
T COG1013 73 GRAAAVATGIKLANPAL---------SVIVIGGDGDAYDIGGNHLIHALRRNHD------ITYIVVDNEVYGNTGGQASP 137 (294)
T ss_pred CcchhhHHHHHHhccCC---------eEEEEecchhHhhhhhHHHHHHHHcCCC------eEEEEECCeecccCCCccCC
Confidence 67789999999998762 689999999646666544222222 666 9999999985 444311100
Q ss_pred c-----------------ccccHhHhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe--ecCCCCCC
Q psy8742 497 R-----------------SSSYCTDVARVVNAPIF-HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS--YRRNGHNE 556 (968)
Q Consensus 497 r-----------------ss~~~td~Ak~~giP~~-hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t--YR~~GHne 556 (968)
+ .-.++..+|.++|.+.+ ++---|+......+++|+++ +||.||++.+ --.++-|
T Consensus 138 tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~----~Gps~I~v~sPC~t~~~~~- 212 (294)
T COG1013 138 TTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH----KGPSFIDVLSPCPTGNGRN- 212 (294)
T ss_pred CCCCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc----cCCeEEEEecCCCCCCCcc-
Confidence 0 11267788999999866 77777799999999999964 5999999975 2222211
Q ss_pred CCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHc
Q psy8742 557 IDEPMFTQPLMYKIIKKTPPALDKYANKLIEE 588 (968)
Q Consensus 557 ~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~ 588 (968)
+..+-.++..+.+..-+|+-+|.....+.
T Consensus 213 ---~~~~~~~~~~ave~g~~pl~~~~~~~~~~ 241 (294)
T COG1013 213 ---TMKTIEEAKLAVETGYWPLYRYEPGKAEE 241 (294)
T ss_pred ---cchHHHHHHHHHhcCCceeeeccCcchhh
Confidence 21111223333433457777666544333
No 149
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=94.33 E-value=0.057 Score=60.40 Aligned_cols=123 Identities=21% Similarity=0.254 Sum_probs=87.0
Q ss_pred CCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCc---
Q psy8742 414 NPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQI--- 487 (968)
Q Consensus 414 NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqi--- 487 (968)
...+||-.+|.|+|..-|.-- .-+|.+.||=-| |=.. |-|... +|| -|||++||-|
T Consensus 417 qagplgwtipaalgv~~adp~---------r~vvalsgdydf--qfmi-eelavgaq~k~p------yihv~vnnaylgl 478 (592)
T COG3960 417 QAGPLGWTIPAALGVCAADPK---------RNVVAISGDYDF--QFLI-EELAVGAQFKIP------YIHVLVNNAYLGL 478 (592)
T ss_pred ccCCcccccchhhceeecCCC---------CceEEeecCchH--HHHH-HHHhhhhcccCc------eEEEEecchHHHH
Confidence 346899999999998765322 236778899887 5444 444443 899 9999999965
Q ss_pred ------ccccCCCccccc------------ccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 488 ------GFTTDPRFSRSS------------SYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 488 ------g~TT~~~~~rss------------~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
||..+...+-.- -+-..++++.|+..++|- +|+....|...|.+...+.+-||+||++--
T Consensus 479 irqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~--~p~e~a~af~~a~~lm~eh~vpvvve~ile 556 (592)
T COG3960 479 IRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQHRVPVVVEVILE 556 (592)
T ss_pred HHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEec--ChHHhhHHHHHHHHHHHhcCCCeeeehHHH
Confidence 555433222111 112235677888888885 889999999999999999999999999887
Q ss_pred cCCCCCC
Q psy8742 550 RRNGHNE 556 (968)
Q Consensus 550 R~~GHne 556 (968)
|..--+.
T Consensus 557 rvtnism 563 (592)
T COG3960 557 RVTNISM 563 (592)
T ss_pred Hhhcccc
Confidence 7654443
No 150
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=93.79 E-value=0.35 Score=55.73 Aligned_cols=94 Identities=13% Similarity=0.021 Sum_probs=64.2
Q ss_pred EEEEEeCCccccCcchHHHHHHh-CCCCCCCcccEEEEEEcCC-cccc-------cC---------CCcccccccHhHhh
Q psy8742 445 MSILLHGDAAFCGQGVVFETFHL-SDLPDYTTHGTIHIVVNNQ-IGFT-------TD---------PRFSRSSSYCTDVA 506 (968)
Q Consensus 445 v~v~~hGDgAfsgQGvv~EaLNl-A~LP~y~~gGvIfVVeNNq-ig~T-------T~---------~~~~rss~~~td~A 506 (968)
-++++-|||....-|.-+=.=-+ .+.. +.+||.||+ ||.| || ........++..+|
T Consensus 153 ~v~v~gGDG~~ydIG~~~l~ha~~r~~n------i~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia 226 (365)
T cd03377 153 SVWIIGGDGWAYDIGYGGLDHVLASGEN------VNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIA 226 (365)
T ss_pred ceEEEecchhhhccchhhHHHHHHcCCC------eEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHH
Confidence 48889999964445533311112 2667 899999997 4554 11 11112224567788
Q ss_pred hhcCCcEE-EEeC-CCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 507 RVVNAPIF-HVNS-DDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 507 k~~giP~~-hVDG-nD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
.++|++.+ ++-- -|+..+..++++|.+ ++||.||++.+
T Consensus 227 ~a~g~~YVA~~s~~~~~~~~~~~i~eA~~----~~Gps~I~v~s 266 (365)
T cd03377 227 MSYGNVYVAQIALGANDNQTLKAFREAEA----YDGPSLIIAYS 266 (365)
T ss_pred HHcCCCEEEEEecccCHHHHHHHHHHHhc----CCCCEEEEEEc
Confidence 89999977 5543 599999999999985 58999999975
No 151
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=93.14 E-value=12 Score=46.31 Aligned_cols=170 Identities=16% Similarity=0.146 Sum_probs=88.8
Q ss_pred cEeecCCcchHHHH----HHhhhcccCCCC--ccccccchh-----hhhHhhhhHHHHHHHhhhccccccccCcEEEcCc
Q psy8742 753 YTVCNSSLSEFGVL----GFELGFSMTNPN--TLVCWEAQF-----GDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH 821 (968)
Q Consensus 753 ~~v~nspLsE~avl----G~~~G~s~~g~~--~l~iWE~qf-----gDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~ 821 (968)
-+|.---|+|.+.+ ..+.-||+.|.. |+-|.=-|| ||-+|-| -||-. .| ..-+..++=+-|-
T Consensus 562 GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~~waA---~dq~A-Rg-FLlgaTagrtTLn-- 634 (887)
T COG2609 562 GQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDLLWAA---GDQDA-RG-FLLGATAGRTTLN-- 634 (887)
T ss_pred cchHHhhhccccHHHHHHHHhcccccCCccceeeeeeechhhhhhHHHHHHHH---Hhhhh-cc-eeEeecCCCceeC--
Confidence 35666677887654 455667777765 444666677 6777777 67621 00 1111122223233
Q ss_pred cCCCCCcccCCChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCC-cEEEEec
Q psy8742 822 GLEGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRK-PLVLMTP 900 (968)
Q Consensus 822 G~~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~-Pli~~~p 900 (968)
|-|-+|-+. ..-+|- +.+| |+.-.-|+-....-.+|+..++|-|++ .-=++.-
T Consensus 635 ---gEGlqHedg--hS~l~~-----~~ip----------------~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yY 688 (887)
T COG2609 635 ---GEGLQHEDG--HSHLQA-----MTIP----------------NCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYY 688 (887)
T ss_pred ---ccccccccc--cchhhh-----hcCC----------------CccccCchHHHHHHHHHHHHHHHHhccCcCCcEEE
Confidence 445556554 223332 3467 999999999999999999999887654 3111111
Q ss_pred ccCcCCCCCCCCcccccCCCceEEeccCCCc-c-ccCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 901 KSLLRHPEAKSSFDDMIEGTEFLRVIPDDSI-S-ERKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 901 K~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~-~-~~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
-.|+...... -++..| ..+-|+.---. . .....+-+..|+.||-+.-..+++-+-
T Consensus 689 lt~~ne~~~q---Pamp~g-ae~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~Aael 745 (887)
T COG2609 689 ITLSNENYPQ---PAMPEG-AEEGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAEL 745 (887)
T ss_pred EEeccCcCCC---CCCCCc-chhhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHHHH
Confidence 1222211111 111111 11112111000 0 001125677899999998887776653
No 152
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=91.50 E-value=0.12 Score=55.99 Aligned_cols=111 Identities=14% Similarity=0.219 Sum_probs=66.6
Q ss_pred CCcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cCCCC-C---cccCC
Q psy8742 758 SSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GLEGM-G---PEHSS 832 (968)
Q Consensus 758 spLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~~g~-G---peHSs 832 (968)
-.-||-+.++..+|+|+.|-|.++.=--|= ++ ++.|.+...+ +...|+||.+-. +..+. + ++|++
T Consensus 41 ~~E~E~~A~~~~~GAs~aG~ra~t~ts~~G---l~---lm~e~l~~a~----~~~~P~V~~~~~R~g~~~g~~~~~~q~D 110 (230)
T PF01855_consen 41 QAESEHAAMEAAIGASAAGARAMTATSGPG---LN---LMAEPLYWAA----GTELPIVIVVVQRAGPSPGLSTQPEQDD 110 (230)
T ss_dssp E-SSHHHHHHHHHHHHHTT--EEEEEECCH---HH---HHCCCHHHHH----HTT--EEEEEEEB---SSSB--SB-SHH
T ss_pred EecchHHHHHHHHHHHhcCCceEEeecCCc---cc---ccHhHHHHHH----HcCCCEEEEEEECCCCCCCCcCcCChhH
Confidence 346899999999999999999998111111 11 2244444332 235788887754 22232 2 34433
Q ss_pred ChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHH--hcCCCCcEEEEecccCcC
Q psy8742 833 ARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQI--ALPFRKPLVLMTPKSLLR 905 (968)
Q Consensus 833 ~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~--~~~~r~Pli~~~pK~Llr 905 (968)
- +. .++.||.|+.|+|+.++|.+.+.+. ...|+.|||++....+.-
T Consensus 111 ~----~~-----------------------~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~s 158 (230)
T PF01855_consen 111 L----MA-----------------------ARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLCS 158 (230)
T ss_dssp H----HH-----------------------TTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCCT
T ss_pred H----HH-----------------------HHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhhc
Confidence 3 22 1234999999999999999888874 466899999999999883
No 153
>KOG1184|consensus
Probab=90.23 E-value=0.27 Score=58.18 Aligned_cols=113 Identities=18% Similarity=0.111 Sum_probs=70.7
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCCcccccCC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQIGFTTDP 493 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNqig~TT~~ 493 (968)
.|+|-..|-++|+|.|.+. ..+|+|.|||+| |=.++|-..|. .|| ..||++.||+|-|-...
T Consensus 415 gsIG~svga~lG~a~a~~e---------~rvilfiGDGs~--qlTvQeiStmir~gl~-----~~if~~NN~GYTIE~~I 478 (561)
T KOG1184|consen 415 GSIGWSVGATLGYAQAAPE---------KRVILFIGDGSF--QLTVQEISTMIRWGLK-----PIIFLINNGGYTIEVEI 478 (561)
T ss_pred eeccccchhhhhhhhccCC---------ceEEEEecCccc--eeeHHHHHHHHhcCCC-----cEEEEEeCCceEEEEee
Confidence 4567778999999999877 359999999997 99999999998 777 25566655566443322
Q ss_pred Ccc----cccccHhHhhhhcCCcE-----EEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 494 RFS----RSSSYCTDVARVVNAPI-----FHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 494 ~~~----rss~~~td~Ak~~giP~-----~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
++. .-....+++-++||.-. .+| .--+....+.+.+.- .+..++.|||+.-
T Consensus 479 H~~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v--~~~~e~~~~~~~~~~--~~~~~i~liEv~l 538 (561)
T KOG1184|consen 479 HDGPYNDIQNWDYTALLEAFGAGEGKYETHKV--RTEEELVEAIKDATF--EKNDKIRLIEVIL 538 (561)
T ss_pred cCCCccccccchHHHHHHhhcCccceeEEeee--ccchHHHHHHhhhhh--cccCceEEEEEec
Confidence 221 11134456666665433 222 122334444444441 2455688888853
No 154
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=90.09 E-value=2.2 Score=43.78 Aligned_cols=104 Identities=12% Similarity=-0.008 Sum_probs=65.1
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.+|+. ++-.++++..|=|+...-.-+.++. ..++| +|+|+-+-....- ........+..
T Consensus 53 mA~gyar~t--------g~~~v~~~t~GpG~~n~~~~l~~A~-~~~~P------vl~I~g~~~~~~~--~~~~~q~~d~~ 115 (164)
T cd07039 53 AASAEAKLT--------GKLGVCLGSSGPGAIHLLNGLYDAK-RDRAP------VLAIAGQVPTDEL--GTDYFQEVDLL 115 (164)
T ss_pred HHHHHHHHh--------CCCEEEEECCCCcHHHHHHHHHHHH-hcCCC------EEEEecCCccccc--CCCCCcccCHH
Confidence 355655543 3456777777888732222222222 12899 9999865443211 01111112456
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel 546 (968)
++.+.+---..+|+ +++.+.++++.|+..++..+|||+|++
T Consensus 116 ~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 116 ALFKDVAVYNETVT--SPEQLPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred HHHHHhhcEEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 66776666666666 888899999999988888889999998
No 155
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=88.90 E-value=0.79 Score=56.38 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=78.6
Q ss_pred chHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccCCCCCc---ccCCChHHH
Q psy8742 761 SEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGP---EHSSARLER 837 (968)
Q Consensus 761 sE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~~g~Gp---eHSs~r~er 837 (968)
+|.+.+.+++|+|+.|-|.++.+--+= +| ++.|.|...+ .-+...|+|+.+-.+. |-++ +|++-
T Consensus 54 ~E~~a~~~~~GAs~aG~ra~t~ts~~G---l~---~~~e~l~~~~--~~g~~~~iV~~~~~~~-gp~~~~~~q~d~---- 120 (595)
T TIGR03336 54 NEKVAVEVAAGAAWSGLRAFCTMKHVG---LN---VAADPLMTLA--YTGVKGGLVVVVADDP-SMHSSQNEQDTR---- 120 (595)
T ss_pred CHHHHHHHHHHHHhcCcceEEEccCCc---hh---hhHHHhhhhh--hhcCcCceEEEEccCC-CCccchhhHhHH----
Confidence 899999999999999999999554222 22 2378887643 1123678888875442 2222 22222
Q ss_pred HhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHh--cCCCCcEEEEecccCcCCCCC
Q psy8742 838 FLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIA--LPFRKPLVLMTPKSLLRHPEA 909 (968)
Q Consensus 838 ~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~--~~~r~Pli~~~pK~Llr~~~a 909 (968)
++ .++.+|.|+.|+|+.++|.+.+.+.+ ..|+-||+++.-+.|-.....
T Consensus 121 ~~-----------------------~~~~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~ 171 (595)
T TIGR03336 121 HY-----------------------AKFAKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGD 171 (595)
T ss_pred HH-----------------------HHhcCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceee
Confidence 22 12238889999999999999999865 568999999998866544433
No 156
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=88.47 E-value=2.3 Score=43.47 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=65.7
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCccc-ccCC--Cccc--c
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGF-TTDP--RFSR--S 498 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~-TT~~--~~~r--s 498 (968)
.|.|.+|+.+ ..++++..|=|..-.-.-+.|+ ...+.| +|+|+-+....- .+.. .... .
T Consensus 50 mA~gyar~t~---------~gv~~~t~GpG~~n~~~gl~~A-~~~~~P------vl~i~g~~~~~~~~~~~~~~~~~~~~ 113 (162)
T cd07038 50 AADGYARVKG---------LGALVTTYGVGELSALNGIAGA-YAEHVP------VVHIVGAPSTKAQASGLLLHHTLGDG 113 (162)
T ss_pred HHHHHHHhhC---------CEEEEEcCCccHHHHHHHHHHH-HHcCCC------EEEEecCCCccccccccceeeccccc
Confidence 4556666542 3566666677773323334444 344899 999986643210 0000 0000 0
Q ss_pred c-ccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy8742 499 S-SYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 499 s-~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel 546 (968)
. .+..++.+.+--...+|. +++.+-.+++.|+..++.+++||+||+
T Consensus 114 ~~~d~~~~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 114 DFDVFLKMFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred chHHHHHHHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 0 134566777777778885 888999999999999999999999987
No 157
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=88.17 E-value=6.2 Score=52.38 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=65.2
Q ss_pred EEEEEEeCCccccCcc--hHHHHHHhCCCCCCCcccEEEEEEcCCc-ccc-------cC---------CCcccccccHhH
Q psy8742 444 VMSILLHGDAAFCGQG--VVFETFHLSDLPDYTTHGTIHIVVNNQI-GFT-------TD---------PRFSRSSSYCTD 504 (968)
Q Consensus 444 ~v~v~~hGDgAfsgQG--vv~EaLNlA~LP~y~~gGvIfVVeNNqi-g~T-------T~---------~~~~rss~~~td 504 (968)
.-++++-|||....-| -++-++- .+.. +.+||.||+. +-| || ........++..
T Consensus 952 ~sv~~~~GDG~~~diG~~~l~~~~~-r~~~------v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~ 1024 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYGGLDHVLA-SGKD------VNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGM 1024 (1165)
T ss_pred ceeEEEecchhhhccCccchHHHHH-cCCC------eEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHH
Confidence 3589999999644444 3332322 2666 8899999974 443 22 111122345677
Q ss_pred hhhhcCCcEE-EEe-CCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 505 VARVVNAPIF-HVN-SDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 505 ~Ak~~giP~~-hVD-GnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
+|.++|.+.+ ++- |-++..+..++++|. +++||.||++.+
T Consensus 1025 ~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~----~~~G~s~i~~~~ 1066 (1165)
T TIGR02176 1025 MAMTYGYVYVAQVSMGANMQQTLKAFREAE----AYDGPSIVIAYS 1066 (1165)
T ss_pred HHHHCCCCEEEEEecccCHHHHHHHHHHHH----cCCCCEEEEEEC
Confidence 8899999876 666 679999999999997 468999999987
No 158
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=88.14 E-value=1.5 Score=51.24 Aligned_cols=115 Identities=10% Similarity=0.153 Sum_probs=78.4
Q ss_pred CCcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cCCCCCc---ccCCC
Q psy8742 758 SSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GLEGMGP---EHSSA 833 (968)
Q Consensus 758 spLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~~g~Gp---eHSs~ 833 (968)
..=||.+.++.++|+|++|-|.++ =--=.-| =+|.+.+...+-. ..|+||..-. +..+.++ +|+..
T Consensus 54 ~~E~E~aA~~~aiGAs~aGaRa~T--aTSg~Gl----~lm~E~l~~aa~~----~lPiVi~~~~R~~p~~~~~~~~q~D~ 123 (390)
T PRK08366 54 PVESEHSAMAACIGASAAGARAFT--ATSAQGL----ALMHEMLHWAAGA----RLPIVMVDVNRAMAPPWSVWDDQTDS 123 (390)
T ss_pred EeCCHHHHHHHHHHHHhhCCCeEe--eeCcccH----HHHhhHHHHHHhc----CCCEEEEEeccCCCCCCCCcchhhHH
Confidence 345899999999999999999998 1111112 2346776654422 5788876532 1112223 34443
Q ss_pred hHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHh--cCCCCcEEEEecccCcCCCCC
Q psy8742 834 RLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIA--LPFRKPLVLMTPKSLLRHPEA 909 (968)
Q Consensus 834 r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~--~~~r~Pli~~~pK~Llr~~~a 909 (968)
++ +++.||.++.|+|+.++|.+...+.. .+++-|++++..+.++-|-..
T Consensus 124 ----~~-----------------------~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~ 174 (390)
T PRK08366 124 ----LA-----------------------QRDTGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYD 174 (390)
T ss_pred ----HH-----------------------HhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccc
Confidence 22 12349999999999999999998865 578999999999887765444
No 159
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=87.27 E-value=1.1 Score=52.52 Aligned_cols=107 Identities=14% Similarity=0.182 Sum_probs=75.8
Q ss_pred chHHHHHHhhhcccCCCCccccccchhhhhHh--hhhHHHHHHHhhhccccccccCcEEEcCccCCCC-C---cccCCCh
Q psy8742 761 SEFGVLGFELGFSMTNPNTLVCWEAQFGDFNN--TAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGM-G---PEHSSAR 834 (968)
Q Consensus 761 sE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~--~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~~g~-G---peHSs~r 834 (968)
||-+.++..+|+|++|-|.++ +.- |-=+|.|.+...+- ...|+||..-.+.-+. - ++|+..
T Consensus 64 ~E~~A~~~~~GAs~aGaRa~T--------aTS~~Gl~lm~E~l~~aa~----~~~P~V~~~~~R~~~~~~~i~~d~~D~- 130 (407)
T PRK09622 64 SEHAAMSACVGAAAAGGRVAT--------ATSSQGLALMVEVLYQASG----MRLPIVLNLVNRALAAPLNVNGDHSDM- 130 (407)
T ss_pred cHHHHHHHHHHHHhhCcCEEe--------ecCcchHHHHhhHHHHHHH----hhCCEEEEEeccccCCCcCCCchHHHH-
Confidence 999999999999999999998 322 11235677655432 2579888775533111 1 233332
Q ss_pred HHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhc--CC--CCcEEEEecccCcCC
Q psy8742 835 LERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIAL--PF--RKPLVLMTPKSLLRH 906 (968)
Q Consensus 835 ~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~--~~--r~Pli~~~pK~Llr~ 906 (968)
+ +.++.||.|+.|+|+.++|.+...+.+- .+ |-|++++....++-|
T Consensus 131 ----~----------------------~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh 180 (407)
T PRK09622 131 ----Y----------------------LSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSH 180 (407)
T ss_pred ----H----------------------HHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhC
Confidence 1 1234499999999999999999998764 66 899999999997554
No 160
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=87.16 E-value=3.3 Score=42.51 Aligned_cols=106 Identities=16% Similarity=0.135 Sum_probs=68.2
Q ss_pred chhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccH
Q psy8742 423 PVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYC 502 (968)
Q Consensus 423 PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~ 502 (968)
-.|.|.+|+. ++..++++..|=|+.-.-..++++ ...+.| +|+|+-.-..........+. ..+.
T Consensus 53 ~~A~g~ar~~--------g~~~v~~~~~GpG~~n~~~~l~~A-~~~~~P------vl~i~g~~~~~~~~~~~~q~-~~d~ 116 (172)
T PF02776_consen 53 FMADGYARAT--------GRPGVVIVTSGPGATNALTGLANA-YADRIP------VLVITGQRPSAGEGRGAFQQ-EIDQ 116 (172)
T ss_dssp HHHHHHHHHH--------SSEEEEEEETTHHHHTTHHHHHHH-HHTT-E------EEEEEEESSGGGTTTTSTTS-STHH
T ss_pred HHHHHHHHhh--------ccceEEEeecccchHHHHHHHhhc-ccceee------EEEEecccchhhhccccccc-chhh
Confidence 3456666553 445677777777774333334443 345999 99999876654443211121 2245
Q ss_pred hHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHh-hcCCCcEEEEE
Q psy8742 503 TDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWR-NTFHKDVVIDI 546 (968)
Q Consensus 503 td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~r-r~~~gPvlIel 546 (968)
..+.+.+.....+|. +++.+..+++.|+..+ ...++||+|++
T Consensus 117 ~~~~~~~~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~i 159 (172)
T PF02776_consen 117 QSLFRPVTKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEI 159 (172)
T ss_dssp HHHHGGGSSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEE
T ss_pred cchhccccchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEc
Confidence 667778887888885 6777777888888877 67789999998
No 161
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=87.05 E-value=2.2 Score=52.29 Aligned_cols=117 Identities=15% Similarity=0.275 Sum_probs=77.1
Q ss_pred chHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cCCCCC----cccCCChH
Q psy8742 761 SEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GLEGMG----PEHSSARL 835 (968)
Q Consensus 761 sE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~~g~G----peHSs~r~ 835 (968)
||-+.++..+|+|++|-|+++ =--=.-| =+|.|.+-.++- ...|+||..-. +....| ++|+.-
T Consensus 245 ~E~aA~~~a~GAs~aG~Ra~t--aTSg~Gl----~lm~E~l~~a~~----~~~P~Vi~~~~R~gpstg~~t~~eq~D~-- 312 (562)
T TIGR03710 245 DEIAAINMAIGASYAGARAMT--ATSGPGF----ALMTEALGLAGM----TETPLVIVDVQRGGPSTGLPTKTEQSDL-- 312 (562)
T ss_pred cHHHHHHHHHhHHhcCCceee--cCCCCCh----hHhHHHHhHHHh----ccCCEEEEEcccCCCCCCCCCCccHHHH--
Confidence 899999999999999999999 1111112 234566532221 24699998753 322222 344333
Q ss_pred HHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHh--cCCCCcEEEEecccCcCCCCC
Q psy8742 836 ERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIA--LPFRKPLVLMTPKSLLRHPEA 909 (968)
Q Consensus 836 er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~--~~~r~Pli~~~pK~Llr~~~a 909 (968)
++.+-.. +-+.+|.|+.|+|+.++|.+...+.+ ..|+-|||++..+.|-.+...
T Consensus 313 --~~~~~~~------------------hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~ 368 (562)
T TIGR03710 313 --LFALYGG------------------HGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYET 368 (562)
T ss_pred --HHHhcCC------------------CCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCcee
Confidence 3322111 11247999999999999999988865 578999999999988654433
No 162
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=86.89 E-value=1.3 Score=51.51 Aligned_cols=120 Identities=12% Similarity=0.179 Sum_probs=73.7
Q ss_pred eecCCcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHH-HhhhccccccccCcEEEcCc-cCCCCC-cccC
Q psy8742 755 VCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQF-ISSGQAKWVRQSGLVMLLPH-GLEGMG-PEHS 831 (968)
Q Consensus 755 v~nspLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~-i~~~~~kw~~~~~lv~~lP~-G~~g~G-peHS 831 (968)
++-.- ||-+.++.++|+|++|-|.++- --=+-|+ .|+.++ ++.+ . ..|+||..-. +.-+.| |.++
T Consensus 51 ~vq~E-~E~aA~~~a~GAs~aG~Ra~Ta--TSg~Gl~----lm~E~~~~a~~-~----e~P~Viv~~~R~gp~tg~p~~~ 118 (376)
T PRK08659 51 FIQME-DEIASMAAVIGASWAGAKAMTA--TSGPGFS----LMQENIGYAAM-T----ETPCVIVNVQRGGPSTGQPTKP 118 (376)
T ss_pred EEEeC-chHHHHHHHHhHHhhCCCeEee--cCCCcHH----HHHHHHHHHHH-c----CCCEEEEEeecCCCCCCCCCCc
Confidence 44444 9999999999999999999991 0001111 123333 2222 1 4799988743 222233 3333
Q ss_pred CChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHh--cCCCCcEEEEecccCcC
Q psy8742 832 SARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIA--LPFRKPLVLMTPKSLLR 905 (968)
Q Consensus 832 s~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~--~~~r~Pli~~~pK~Llr 905 (968)
+. -+-...+-. .+-+.++.|+.|+|+.++|.+...+.. .+|+-|++++..+.|-.
T Consensus 119 ~q-~D~~~~~~~------------------~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh 175 (376)
T PRK08659 119 AQ-GDMMQARWG------------------THGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGH 175 (376)
T ss_pred Cc-HHHHHHhcc------------------cCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhC
Confidence 32 121221100 011237999999999999999988865 57899999999886543
No 163
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=86.51 E-value=3.7 Score=40.54 Aligned_cols=104 Identities=15% Similarity=0.174 Sum_probs=62.8
Q ss_pred chhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccH
Q psy8742 423 PVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYC 502 (968)
Q Consensus 423 PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~ 502 (968)
-.|.|.+++. + ..++++.+|.|..-.-.-++++. ..++| +|+|+-.....-.. ... -...
T Consensus 49 ~~A~G~a~~~--------~-~~v~~~~~gpg~~~~~~~l~~a~-~~~~P------vl~i~~~~~~~~~~--~~~--~q~~ 108 (154)
T cd06586 49 GAAAGYARAG--------G-PPVVIVTSGTGLLNAINGLADAA-AEHLP------VVFLIGARGISAQA--KQT--FQSM 108 (154)
T ss_pred HHHHHHHHhh--------C-CEEEEEcCCCcHHHHHHHHHHHH-hcCCC------EEEEeCCCChhhhc--cCc--cccc
Confidence 3456666652 2 45666666888832222333332 33899 99998655432110 100 1123
Q ss_pred hHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy8742 503 TDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 503 td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel 546 (968)
.+.+..-++|-..+--.+++.....+..|+..+...++||+|++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 109 FDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred CHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 33444446666666567888888888888888888889999986
No 164
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=85.53 E-value=6 Score=39.49 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=57.1
Q ss_pred EEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCHHH
Q psy8742 444 VMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEA 523 (968)
Q Consensus 444 ~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~eA 523 (968)
.++++..|=|..-.-..++++..- ++| +|+|+-.-...-... ......+..++.+.+-...++|+ +++.
T Consensus 61 ~v~~~~~gpG~~n~~~~l~~A~~~-~~P------ll~i~~~~~~~~~~~--~~~q~~d~~~~~~~~~~~~~~i~--~~~~ 129 (155)
T cd07035 61 GVVLVTSGPGLTNAVTGLANAYLD-SIP------LLVITGQRPTAGEGR--GAFQEIDQVALFRPITKWAYRVT--SPEE 129 (155)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhh-CCC------EEEEeCCCccccccC--CcccccCHHHHHHHHhceEEEcC--CHHH
Confidence 455555566663323333333322 999 999986544322111 11112334556666655667774 8999
Q ss_pred HHHHHHHHHHHhhcC-CCcEEEEE
Q psy8742 524 VIHVCNLAAEWRNTF-HKDVVIDI 546 (968)
Q Consensus 524 V~~a~~~Ave~rr~~-~gPvlIel 546 (968)
+...+..|+..+... ++||.|++
T Consensus 130 ~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 130 IPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEe
Confidence 999999999999888 79999986
No 165
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=85.00 E-value=4.5 Score=40.66 Aligned_cols=90 Identities=14% Similarity=0.072 Sum_probs=54.3
Q ss_pred EEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcC--CcEEEEeCCCHH
Q psy8742 445 MSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVN--APIFHVNSDDPE 522 (968)
Q Consensus 445 v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~g--iP~~hVDGnD~e 522 (968)
++++..|-|..-.-..++++. ..+.| +|+|+-.-...-.... .. .-.. .|.....+ .+.++| .|++
T Consensus 67 v~~~~~gpG~~n~~~~l~~a~-~~~~P------~v~i~g~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~--~~~~ 134 (160)
T cd07034 67 AMTATSGPGLNLMAEALYLAA-GAELP------LVIVVAQRPGPSTGLP-KP-DQSD-LMAARYGGHPWPVLAP--SSVQ 134 (160)
T ss_pred EEEeeCcchHHHHHHHHHHHH-hCCCC------EEEEEeeCCCCCCCCC-Cc-CcHH-HHHHHhCCCCEEEEeC--CCHH
Confidence 777777888832222333333 34788 9999865332111100 00 0011 12222333 555555 5899
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEE
Q psy8742 523 AVIHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 523 AV~~a~~~Ave~rr~~~gPvlIel 546 (968)
++...++.|++.++.+++||+|-.
T Consensus 135 ~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 135 EAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEc
Confidence 999999999999999999999864
No 166
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=84.24 E-value=4.4 Score=46.81 Aligned_cols=112 Identities=14% Similarity=0.168 Sum_probs=73.4
Q ss_pred eecCCcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhh-c--ccc-ccccCcEEEcCccC-CCCC--
Q psy8742 755 VCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSG-Q--AKW-VRQSGLVMLLPHGL-EGMG-- 827 (968)
Q Consensus 755 v~nspLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~-~--~kw-~~~~~lv~~lP~G~-~g~G-- 827 (968)
++. .=+|-+.++.++|+|++|-|+++.= -+|.++-. | ..+ +...|+||.+-..- .+.|
T Consensus 51 ~vq-~E~E~aA~~~a~GAs~aG~Ra~taT--------------Sg~Gl~lm~E~l~~a~~~e~P~v~v~v~R~~p~~g~t 115 (352)
T PRK07119 51 FVQ-AESEVAAINMVYGAAATGKRVMTSS--------------SSPGISLKQEGISYLAGAELPCVIVNIMRGGPGLGNI 115 (352)
T ss_pred EEe-eCcHHHHHHHHHHHHhhCCCEEeec--------------CcchHHHHHHHHHHHHHccCCEEEEEeccCCCCCCCC
Confidence 444 7799999999999999999999911 12222211 1 111 12578887764422 1222
Q ss_pred -cccCCChHHHHhcc--cCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHh--cCCCCcEEEEeccc
Q psy8742 828 -PEHSSARLERFLQM--SDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIA--LPFRKPLVLMTPKS 902 (968)
Q Consensus 828 -peHSs~r~er~lql--~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~--~~~r~Pli~~~pK~ 902 (968)
++|++. ++++ +.. -+.+|.|+.|+||.++|.+.+.+.+ ..++-|+|++..+.
T Consensus 116 ~~eq~D~----~~~~~~~gh-------------------gd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~ 172 (352)
T PRK07119 116 QPSQGDY----FQAVKGGGH-------------------GDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV 172 (352)
T ss_pred cchhHHH----HHHHhcCCC-------------------CCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh
Confidence 355543 3332 111 1237999999999999999998865 56899999999987
Q ss_pred Cc
Q psy8742 903 LL 904 (968)
Q Consensus 903 Ll 904 (968)
|-
T Consensus 173 ls 174 (352)
T PRK07119 173 LG 174 (352)
T ss_pred hh
Confidence 64
No 167
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=83.22 E-value=7.9 Score=45.16 Aligned_cols=109 Identities=18% Similarity=0.225 Sum_probs=74.6
Q ss_pred chhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchH--HHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCccc
Q psy8742 423 PVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVV--FETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSR 497 (968)
Q Consensus 423 PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv--~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~r 497 (968)
-+|.|+++| |.+.++ +++|||.. +|.+-++ .+| +|.++.+- -|-+|...- +
T Consensus 62 ~~a~GAs~a---------G~Ra~T-------aTSg~Gl~lm~E~~~~a~~~e~P------~Viv~~~R-~gp~tg~p~-~ 117 (376)
T PRK08659 62 AAVIGASWA---------GAKAMT-------ATSGPGFSLMQENIGYAAMTETP------CVIVNVQR-GGPSTGQPT-K 117 (376)
T ss_pred HHHHhHHhh---------CCCeEe-------ecCCCcHHHHHHHHHHHHHcCCC------EEEEEeec-CCCCCCCCC-C
Confidence 567777765 333433 23889987 6888776 899 88888874 444432111 1
Q ss_pred cc-ccHh-Hhhhhc-CCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCC
Q psy8742 498 SS-SYCT-DVARVV-NAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEI 557 (968)
Q Consensus 498 ss-~~~t-d~Ak~~-giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~ 557 (968)
++ .+.. .+.-++ +.|.+...-.|+++++.-+..|.+.+.+++-||+|=..+| -+|+..
T Consensus 118 ~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (376)
T PRK08659 118 PAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMRE 178 (376)
T ss_pred cCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCcc
Confidence 11 1111 111122 5888888999999999999999999999999999999984 888754
No 168
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=82.47 E-value=5.1 Score=49.08 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=72.2
Q ss_pred cccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCCc-cccc-CCC
Q psy8742 419 EAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQI-GFTT-DPR 494 (968)
Q Consensus 419 ea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNqi-g~TT-~~~ 494 (968)
|+.+.+|-|.+++.- ..+|+++||++|---|+-. -.|-. +.+ ++.+|.+|.+ ++|- .+.
T Consensus 431 Gssig~a~g~~~~~~----------k~~va~iGDsTF~HsGi~~-l~nAV~n~~~------~~~vvLdN~~tAMTGgQp~ 493 (640)
T COG4231 431 GSSIGIAGGLSFAST----------KKIVAVIGDSTFFHSGILA-LINAVYNKAN------ILVVVLDNRTTAMTGGQPH 493 (640)
T ss_pred cchhhhccccccccC----------CceEEEeccccccccCcHH-HHHHHhcCCC------eEEEEEeccchhccCCCCC
Confidence 444555555554432 4699999999996666654 33332 777 8888888876 6665 222
Q ss_pred ccc---------ccccHhHhhhhcCCcEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy8742 495 FSR---------SSSYCTDVARVVNAPIFH-VNSDDPEAVIHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 495 ~~r---------ss~~~td~Ak~~giP~~h-VDGnD~eAV~~a~~~Ave~rr~~~gPvlIel 546 (968)
.++ ..-.+.++.|+.|+-.+. ||=-|+..+.++.++|++ ..+|.+|-+
T Consensus 494 pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale----~~gpsViia 551 (640)
T COG4231 494 PGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALE----VPGPSVIIA 551 (640)
T ss_pred CCcccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhc----CCCceEEEE
Confidence 211 123467888999998765 466888888888888875 677888755
No 169
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=80.23 E-value=4.8 Score=47.28 Aligned_cols=108 Identities=11% Similarity=0.114 Sum_probs=74.1
Q ss_pred cchHHHHHHhhhcccCCCCccccccchhhhhHh--hhhHHHHHHHhhhccccccccCcEEEcCc--cCCCCC--cccCCC
Q psy8742 760 LSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNN--TAQCIIDQFISSGQAKWVRQSGLVMLLPH--GLEGMG--PEHSSA 833 (968)
Q Consensus 760 LsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~--~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~--G~~g~G--peHSs~ 833 (968)
=||.+.++..+|+|++|-|.++ +.- |-=.|.+.+...+- ...|+||.+.. +-.+.+ ++|++.
T Consensus 57 EsE~aA~~~~~GAs~aGaRa~T--------aTS~~Gl~lm~E~l~~aag----~~lP~V~vv~~R~~~~p~~i~~d~~D~ 124 (394)
T PRK08367 57 ESEHSAISACVGASAAGVRTFT--------ATASQGLALMHEVLFIAAG----MRLPIVMAIGNRALSAPINIWNDWQDT 124 (394)
T ss_pred CCHHHHHHHHHHHHhhCCCeEe--------eeccchHHHHhhHHHHHHH----ccCCEEEEECCCCCCCCCCcCcchHHH
Confidence 4899999999999999999998 221 21234666544331 25788887722 111222 266665
Q ss_pred hHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHh--c--CCCCcEEEEecccCcCC
Q psy8742 834 RLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIA--L--PFRKPLVLMTPKSLLRH 906 (968)
Q Consensus 834 r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~--~--~~r~Pli~~~pK~Llr~ 906 (968)
|.+ ++.||.+++|+|+.++|.+...+.+ . .+.-|++++....++-|
T Consensus 125 ------~~~---------------------rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH 174 (394)
T PRK08367 125 ------ISQ---------------------RDTGWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTH 174 (394)
T ss_pred ------Hhc---------------------cccCeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcC
Confidence 222 2349999999999999999888865 3 34489999999976654
No 170
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=79.73 E-value=6.5 Score=45.86 Aligned_cols=112 Identities=14% Similarity=0.107 Sum_probs=71.6
Q ss_pred chHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc--cCCCCCc---ccCCChH
Q psy8742 761 SEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH--GLEGMGP---EHSSARL 835 (968)
Q Consensus 761 sE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~--G~~g~Gp---eHSs~r~ 835 (968)
+|-+.++.++|+|++|-|+++ =--=+-|+.. ..++--.+ +...|+|+..=. |-.+.-| +|+.-
T Consensus 55 ~E~aA~~~a~GAs~aG~Ra~t--aTSg~G~~lm----~E~~~~a~----~~e~P~V~~~~~R~GpstG~p~~~~q~D~-- 122 (375)
T PRK09627 55 DEISGISVALGASMSGVKSMT--ASSGPGISLK----AEQIGLGF----IAEIPLVIVNVMRGGPSTGLPTRVAQGDV-- 122 (375)
T ss_pred CHHHHHHHHHHHHhhCCCEEe--ecCCchHHHH----hhHHHHHH----hccCCEEEEEeccCCCcCCCCCccchHHH--
Confidence 999999999999999999999 2211222221 12221111 124699987654 3322224 33332
Q ss_pred HHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHh--cCCCCcEEEEecccCc
Q psy8742 836 ERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIA--LPFRKPLVLMTPKSLL 904 (968)
Q Consensus 836 er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~--~~~r~Pli~~~pK~Ll 904 (968)
.+|+-.. +-+.++.|+.|+|+.++|.+...+.+ ..|+-|+|++..+.|-
T Consensus 123 --~~~~~~~------------------hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~ls 173 (375)
T PRK09627 123 --NQAKNPT------------------HGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVG 173 (375)
T ss_pred --HHHhcCC------------------CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHh
Confidence 2222111 11247889999999999999998755 5789999999998653
No 171
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=79.39 E-value=6.3 Score=40.61 Aligned_cols=106 Identities=13% Similarity=0.082 Sum_probs=56.7
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.+|+. ++-.++++..|=|+...-.-++|+. ..+.| +|+|+-+-..... ........+..
T Consensus 50 mAdgyar~s--------g~~gv~~~t~GpG~~n~~~gl~~A~-~~~~P------vl~i~g~~~~~~~--~~~~~q~~d~~ 112 (162)
T cd07037 50 FALGLAKAS--------GRPVAVVCTSGTAVANLLPAVVEAY-YSGVP------LLVLTADRPPELR--GTGANQTIDQV 112 (162)
T ss_pred HHHHHHHhh--------CCCEEEEECCchHHHHHhHHHHHHH-hcCCC------EEEEECCCCHHhc--CCCCCcccchh
Confidence 455655543 4456777777777743333444443 23899 9999864322110 01111111222
Q ss_pred HhhhhcCCcEEEE-eCCC---HHHHHHHHHHHHHHhhcCC-CcEEEEE
Q psy8742 504 DVARVVNAPIFHV-NSDD---PEAVIHVCNLAAEWRNTFH-KDVVIDI 546 (968)
Q Consensus 504 d~Ak~~giP~~hV-DGnD---~eAV~~a~~~Ave~rr~~~-gPvlIel 546 (968)
.+.+.+---..+| +..+ .+.+.++++.|+..++.++ |||+||+
T Consensus 113 ~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 113 GLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred hhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 3333333334444 3333 3337777778887777876 8999987
No 172
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=77.13 E-value=12 Score=38.25 Aligned_cols=89 Identities=10% Similarity=0.014 Sum_probs=53.2
Q ss_pred EEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCc-ccccCCCcccccccHhHh-hhhcCCcEEEEeCCCHHHH
Q psy8742 447 ILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQI-GFTTDPRFSRSSSYCTDV-ARVVNAPIFHVNSDDPEAV 524 (968)
Q Consensus 447 v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqi-g~TT~~~~~rss~~~td~-Ak~~giP~~hVDGnD~eAV 524 (968)
+|+.+=|.--.=.-++++....++| +|+|+-.-.. |-..+.. ......... -...++|...|+ +++.+
T Consensus 62 v~~~~sG~gn~~~~l~~a~~~~~~P------vl~i~g~rg~~~~~~~~q--~~~g~~~~~~l~~~~i~~~~i~--~~e~~ 131 (157)
T TIGR03845 62 ILMQSSGLGNSINALASLNKTYGIP------LPILASWRGVYKEKIPAQ--IPMGRATPKLLDTLGIPYTIPR--EPEEA 131 (157)
T ss_pred EEEeCCcHHHHHHHHHHHHHcCCCC------EEEEEeccCCCCCCCccc--cchhhhhHHHHHHcCCCeEEeC--CHHHH
Confidence 4444444311123344555466999 9999944332 1111111 111111211 244688988885 58999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEE
Q psy8742 525 IHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 525 ~~a~~~Ave~rr~~~gPvlIel 546 (968)
.++..|+..+.+.++||.|=+
T Consensus 132 -~~i~~A~~~a~~~~gPv~il~ 152 (157)
T TIGR03845 132 -KLIEKAISDAYENSRPVAALL 152 (157)
T ss_pred -HHHHHHHHHHHhCCCCEEEEE
Confidence 999999999999999999855
No 173
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=77.12 E-value=7.7 Score=39.71 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=66.0
Q ss_pred CcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccCCCCCc----ccC--C
Q psy8742 759 SLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGP----EHS--S 832 (968)
Q Consensus 759 pLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~~g~Gp----eHS--s 832 (968)
.-.|....|++.|+.+.+-++.+ =.|---..| + +.-+.+.. -....||+++. |+.|..+ .|. .
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v--~~~~sG~gn-~---~~~l~~a~---~~~~~Pvl~i~--g~rg~~~~~~~~q~~~g 108 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAI--LMQSSGLGN-S---INALASLN---KTYGIPLPILA--SWRGVYKEKIPAQIPMG 108 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEE--EEeCCcHHH-H---HHHHHHHH---HcCCCCEEEEE--eccCCCCCCCccccchh
Confidence 45677778888888898887776 333222333 2 22222221 13468999986 4444311 111 1
Q ss_pred ChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhc--CCCCcEEEEecccCc
Q psy8742 833 ARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIAL--PFRKPLVLMTPKSLL 904 (968)
Q Consensus 833 ~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~--~~r~Pli~~~pK~Ll 904 (968)
.-.|..||.+ ++.....++|+|+ ..++++++. .-|+|+.++.+|++.
T Consensus 109 ~~~~~~l~~~------------------------~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~~~ 157 (157)
T TIGR03845 109 RATPKLLDTL------------------------GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPKYW 157 (157)
T ss_pred hhhHHHHHHc------------------------CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCCcC
Confidence 1133444333 4445666789999 999999863 335999999998863
No 174
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=75.96 E-value=21 Score=44.08 Aligned_cols=173 Identities=22% Similarity=0.188 Sum_probs=108.2
Q ss_pred cEeecCCcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccCCCCCcccCC
Q psy8742 753 YTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGPEHSS 832 (968)
Q Consensus 753 ~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~~g~GpeHSs 832 (968)
.-++-=.++|--.+-.++|++..|-+.++ =.- .==.|.| .|-|++++- -|...+||++.--=+ ..|||
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~--~mK-hVGlNvA---sDpl~s~ay--~Gv~GGlviv~aDDp----g~~SS 125 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALV--TMK-HVGLNVA---SDPLMSLAY--AGVTGGLVIVVADDP----GMHSS 125 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeE--Eec-ccccccc---hhhhhhhhh--cCccccEEEEEccCC----Ccccc
Confidence 34566678999999999999999999988 211 1124555 999998651 235678888874211 13555
Q ss_pred ChHH---HHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHH--hcCCCCcEEEEecccCcCCC
Q psy8742 833 ARLE---RFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQI--ALPFRKPLVLMTPKSLLRHP 907 (968)
Q Consensus 833 ~r~e---r~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~--~~~~r~Pli~~~pK~Llr~~ 907 (968)
. .| ||+ .+..+|-|+.|++|..++.+.+.+. .+.++-|+|+=+-..+-...
T Consensus 126 q-neqdsr~y-----------------------~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~ 181 (640)
T COG4231 126 Q-NEQDSRAY-----------------------GKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSR 181 (640)
T ss_pred c-chhHhHHH-----------------------HHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccc
Confidence 4 22 233 1223778999999999999999985 57789999987665543322
Q ss_pred CC----------CCCcc-ccc-CCCceEEeccCCC-c-c---------------------cc-CCCCccEE-EEecchhH
Q psy8742 908 EA----------KSSFD-DMI-EGTEFLRVIPDDS-I-S---------------------ER-KADSVEKL-VFCSGKVY 950 (968)
Q Consensus 908 ~a----------~s~l~-e~~-~g~~F~~vi~d~~-~-~---------------------~~-~~~~v~rv-ilcsGkvy 950 (968)
.- +++.. .|. +..++..+ |+.. . . .. ..++ .+| |+|+|+-|
T Consensus 182 ~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~-p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~-~~lGII~~G~ay 259 (640)
T COG4231 182 GDVEVGLNRRPIVEPEDEFFIKDPGRYVRV-PANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDD-AKLGIIASGIAY 259 (640)
T ss_pred eeEEeccccCCCCccccccccCCccceeec-CcccchhhHHHHHHHHHHHHHHHhhCcccccccCCC-CceEEEecCccH
Confidence 11 12221 222 22222221 2211 0 0 01 1122 345 99999999
Q ss_pred HHHHHHHHhcCCC
Q psy8742 951 YDLIKARNDNNLG 963 (968)
Q Consensus 951 ydl~~~r~~~~~~ 963 (968)
-++.++-++.++.
T Consensus 260 ~yVkeAl~~lgl~ 272 (640)
T COG4231 260 NYVKEALEDLGLD 272 (640)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999998874
No 175
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=73.92 E-value=27 Score=38.08 Aligned_cols=87 Identities=17% Similarity=0.356 Sum_probs=55.8
Q ss_pred cCcchHH--HHHHhC---CCCCCCcccEEEEEEcCCc---ccccCCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHH
Q psy8742 456 CGQGVVF--ETFHLS---DLPDYTTHGTIHIVVNNQI---GFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHV 527 (968)
Q Consensus 456 sgQGvv~--EaLNlA---~LP~y~~gGvIfVVeNNqi---g~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a 527 (968)
+|+|... |.|-++ ++| +|+++.|=.. |.+|... -.|+--....+.+.+...|+.+++.-
T Consensus 67 s~~Gl~lm~e~l~~a~~~~~P------~V~~~~~R~g~~~g~~~~~~-------q~D~~~~~d~~~~vl~p~~~QEa~d~ 133 (230)
T PF01855_consen 67 SGPGLNLMAEPLYWAAGTELP------IVIVVVQRAGPSPGLSTQPE-------QDDLMAARDSGWIVLAPSSPQEAYDM 133 (230)
T ss_dssp ECCHHHHHCCCHHHHHHTT--------EEEEEEEB---SSSB--SB--------SHHHHHTTTSS-EEEE--SHHHHHHH
T ss_pred cCCcccccHhHHHHHHHcCCC------EEEEEEECCCCCCCCcCcCC-------hhHHHHHHhcCeEEEeCCCHHHHHHH
Confidence 6777543 555554 899 8888876433 2333222 24444444666677778899999999
Q ss_pred HHHHHHHhhcCCCcEEEEEEeecCCCCCC
Q psy8742 528 CNLAAEWRNTFHKDVVIDIVSYRRNGHNE 556 (968)
Q Consensus 528 ~~~Ave~rr~~~gPvlIel~tYR~~GHne 556 (968)
+..|.+.+.+++-||++=..+|+. .|..
T Consensus 134 ~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 134 TLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp HHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred HHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 999999999999999999999875 3554
No 176
>PRK08611 pyruvate oxidase; Provisional
Probab=73.48 E-value=17 Score=44.51 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=58.3
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+.-.-.-++||. ..++| +|+|+-.-....... ......+..++.+.+---...| ++
T Consensus 67 g~~gv~~~t~GPG~~N~l~gla~A~-~~~~P------vl~ItG~~~~~~~~~--~~~q~~d~~~l~~~itk~~~~v--~~ 135 (576)
T PRK08611 67 GKIGVCLSIGGPGAIHLLNGLYDAK-MDHVP------VLALAGQVTSDLLGT--DFFQEVNLEKMFEDVAVYNHQI--MS 135 (576)
T ss_pred CCceEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCcccccCC--CCccccCHHHHhhcccceeEEe--CC
Confidence 4456777777888843233333332 33899 999986543321111 1111112344445444444445 48
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~gPvlIel 546 (968)
|+.+..++.+|+..+...+|||+|++
T Consensus 136 ~~~~~~~l~~A~~~A~~~~GPV~l~i 161 (576)
T PRK08611 136 AENLPEIVNQAIRTAYEKKGVAVLTI 161 (576)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEe
Confidence 99999999999998888899999997
No 177
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=73.42 E-value=13 Score=45.32 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=60.8
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|++-.-+-++||. ..+.| +|+|+-.-..-.. ........+..++.+.+---...|+ +
T Consensus 62 g~~gv~~~t~GpG~~n~~~~l~~A~-~~~~P------vl~i~g~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~v~--~ 130 (548)
T PRK08978 62 GKVGVCIATSGPGATNLITGLADAL-LDSVP------VVAITGQVSSPLI--GTDAFQEIDVLGLSLACTKHSFLVQ--S 130 (548)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCCcccc--CCCCCcccchhccccCceeeEEEEC--C
Confidence 4557888888888854444444444 34899 9999753221100 0000111123345555555667775 8
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..++++|+..++.++ |||.|++=
T Consensus 131 ~~~~~~~i~~A~~~A~~~~~GPV~l~iP 158 (548)
T PRK08978 131 LEELPEIMAEAFEIASSGRPGPVLVDIP 158 (548)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 9999999999999998885 99999883
No 178
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=73.03 E-value=15 Score=44.99 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=61.1
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|++..-.-++++. ..++| +|+|+-.=.. +.......-..+...+.+.+-.-...|+ +
T Consensus 66 g~~gv~~~t~GPG~~n~l~gi~~A~-~~~~P------vl~i~G~~~~--~~~~~~~~q~~d~~~l~~~~tk~~~~v~--~ 134 (574)
T PRK07979 66 GEVGVVLVTSGPGATNAITGIATAY-MDSIP------LVVLSGQVAT--SLIGYDAFQECDMVGISRPVVKHSFLVK--Q 134 (574)
T ss_pred CCceEEEECCCccHhhhHHHHHHHh-hcCCC------EEEEECCCCh--hccCCCCCceecHHHHhhcccceEEEeC--C
Confidence 4456788888888843333344433 33899 9999853221 1111111111233445666656667775 8
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..+++.|+..++.++ |||+|++=
T Consensus 135 ~~~~~~~l~~A~~~A~~~~~GPv~l~iP 162 (574)
T PRK07979 135 TEDIPQVLKKAFWLAASGRPGPVVVDLP 162 (574)
T ss_pred HHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 9999999999999999886 89999983
No 179
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=72.80 E-value=21 Score=41.69 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=73.7
Q ss_pred chhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHH--HHHHhC---CCCCCCcccEEEEEEcCC---cccccCCC
Q psy8742 423 PVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVF--ETFHLS---DLPDYTTHGTIHIVVNNQ---IGFTTDPR 494 (968)
Q Consensus 423 PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~--EaLNlA---~LP~y~~gGvIfVVeNNq---ig~TT~~~ 494 (968)
-+|+|+++| |.+.++ |++|+|..+ |.+-++ .+| +|.++.+=. .|+-|...
T Consensus 61 ~~a~GAs~a---------G~Ra~t-------aTSg~G~~lm~E~~~~a~~~e~P------~V~~~~~R~GpstG~p~~~~ 118 (375)
T PRK09627 61 SVALGASMS---------GVKSMT-------ASSGPGISLKAEQIGLGFIAEIP------LVIVNVMRGGPSTGLPTRVA 118 (375)
T ss_pred HHHHHHHhh---------CCCEEe-------ecCCchHHHHhhHHHHHHhccCC------EEEEEeccCCCcCCCCCccc
Confidence 467777765 333443 237888765 888887 999 888777643 44444331
Q ss_pred cccccccHhHhhhhc-CCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCC
Q psy8742 495 FSRSSSYCTDVARVV-NAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEI 557 (968)
Q Consensus 495 ~~rss~~~td~Ak~~-giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~ 557 (968)
.+ .-...+...+ +.|.+...-.|+++++.-+..|++.+.+++-||+|=..+ +. +|+..
T Consensus 119 q~---D~~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~l-sh~~~ 177 (375)
T PRK09627 119 QG---DVNQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-TV-GHMYG 177 (375)
T ss_pred hH---HHHHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-HH-hCCee
Confidence 11 0011111122 567788899999999999999999999999999999888 33 78653
No 180
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=72.79 E-value=14 Score=45.45 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=61.3
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+...-.-++++. ..+.| +|+|+-.-.. +..........+..++.+.+-.-..+|+ +
T Consensus 76 g~~gv~~~t~GpG~~N~~~gla~A~-~~~~P------vl~I~G~~~~--~~~~~~~~q~~d~~~l~~~itk~~~~v~--~ 144 (570)
T PRK06725 76 GKVGVVFATSGPGATNLVTGLADAY-MDSIP------LVVITGQVAT--PLIGKDGFQEADVVGITVPVTKHNYQVR--D 144 (570)
T ss_pred CCCeEEEECCCccHHHHHHHHHHHh-hcCcC------EEEEecCCCc--ccccCCCCcccchhhhhhccceeEEEcC--C
Confidence 4456788888888854444444443 33899 9999843221 1101111111233455665666666775 8
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..++++|+..++.++ |||+|++=
T Consensus 145 ~~~i~~~l~~A~~~A~s~~~GPV~l~iP 172 (570)
T PRK06725 145 VNQLSRIVQEAFYIAESGRPGPVLIDIP 172 (570)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEccc
Confidence 9999999999999999886 89999983
No 181
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=72.41 E-value=16 Score=44.70 Aligned_cols=96 Identities=15% Similarity=0.050 Sum_probs=58.4
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++..++++..|=|+...=.-++||. ..+.| +|+|+-.-... .......-..+..++++.+---...| ++
T Consensus 67 g~~gv~~~t~GpG~~N~l~gi~~A~-~~~~P------vl~i~G~~~~~--~~~~~~~q~~d~~~i~~~~tk~~~~v--~~ 135 (572)
T PRK06456 67 GVPGVCTATSGPGTTNLVTGLITAY-WDSSP------VIAITGQVPRS--VMGKMAFQEADAMGVFENVTKYVIGI--KR 135 (572)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH-hhCCC------EEEEecCCCcc--ccCCCCccccchhhhhhccceeEEEe--CC
Confidence 4456777778888843333344443 33899 99997432211 00001111112234455544455556 58
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..++.+|+..++.++ |||+|++=
T Consensus 136 ~~~~~~~l~~A~~~A~~~~~GPV~l~iP 163 (572)
T PRK06456 136 IDEIPQWIKNAFYIATTGRPGPVVIDIP 163 (572)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 9999999999999998886 99999984
No 182
>PRK07064 hypothetical protein; Provisional
Probab=71.90 E-value=21 Score=43.36 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=64.2
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCc-ccccCCCcccccccH
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQI-GFTTDPRFSRSSSYC 502 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqi-g~TT~~~~~rss~~~ 502 (968)
.|.|.||+. ++-.++++..|=|+...-.-++||. ..+.| +|+|+-+=.. .+.+....-....+.
T Consensus 56 ~A~gyar~t--------g~~~v~~~t~GpG~~N~~~~i~~A~-~~~~P------vl~i~g~~~~~~~~~~~~~~~~~~d~ 120 (544)
T PRK07064 56 MADAHARVS--------GGLGVALTSTGTGAGNAAGALVEAL-TAGTP------LLHITGQIETPYLDQDLGYIHEAPDQ 120 (544)
T ss_pred HHHHHHHhc--------CCCeEEEeCCCCcHHHHHHHHHHHH-hcCCC------EEEEeCCCCcccccCCCcccccccCH
Confidence 456666542 3446777777888743333333333 23899 9999864110 000000000011234
Q ss_pred hHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q psy8742 503 TDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTF-HKDVVIDIV 547 (968)
Q Consensus 503 td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~-~gPvlIel~ 547 (968)
.++++.+---...| ++++++..++++|+..+..+ .|||+|++=
T Consensus 121 ~~~~~~~tk~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (544)
T PRK07064 121 LTMLRAVSKAAFRV--RSAETALATIREAVRVALTAPTGPVSVEIP 164 (544)
T ss_pred HHHhhhhcceEEEe--CCHHHHHHHHHHHHHHhccCCCCcEEEEeC
Confidence 56666665566677 48899999999999888887 699999884
No 183
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=71.80 E-value=15 Score=43.73 Aligned_cols=46 Identities=15% Similarity=0.018 Sum_probs=35.8
Q ss_pred cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 497 RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 497 rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
...-+.+..|.+||+..++|+ +++....| ++.+++..+.+||++.|
T Consensus 529 ~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aA----L~~Ak~~~~ttvi~I~t 574 (617)
T COG3962 529 ILQVDFAAHAESYGAKAYKVG--TIEELEAA----LADAKASDRTTVIVIDT 574 (617)
T ss_pred CCcccHHHHHhhcCceeEecC--CHHHHHHH----HHHHHhCCCCEEEEEec
Confidence 444567788999999999998 77776554 45556788999999976
No 184
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=71.79 E-value=16 Score=44.59 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=63.4
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. ++-.++++..|=|+.-.-.-++||. .++.| +|+|+-.-.... .........+..
T Consensus 66 ~Adgyar~t--------g~~gv~~~t~GpG~~N~l~gl~~A~-~~~~P------vl~i~G~~~~~~--~~~~~~q~~d~~ 128 (564)
T PRK08155 66 IAQGMARTT--------GKPAVCMACSGPGATNLVTAIADAR-LDSIP------LVCITGQVPASM--IGTDAFQEVDTY 128 (564)
T ss_pred HHHHHHHHc--------CCCeEEEECCCCcHHHHHHHHHHHH-hcCCC------EEEEeccCCccc--ccCCCccccchh
Confidence 355666543 3446777777888843344444443 34899 999974221110 000011111233
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+.+---..+|+ +++.+...+.+|+..++.++ |||.|++=
T Consensus 129 ~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 129 GISIPITKHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred hhhhccceEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 44444444555664 89999999999999998885 99999983
No 185
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=71.69 E-value=16 Score=44.90 Aligned_cols=96 Identities=16% Similarity=0.093 Sum_probs=60.6
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+...-.-++||. ..+.| +|+|+-.-. ............+..++++.+-.-..+|+ +
T Consensus 62 g~~gv~~~t~GPG~~n~l~~i~~A~-~~~~P------vl~I~G~~~--~~~~~~~~~q~~d~~~l~~~~tk~s~~v~--~ 130 (586)
T PRK06276 62 GKVGVCVATSGPGATNLVTGIATAY-ADSSP------VIALTGQVP--TKLIGNDAFQEIDALGIFMPITKHNFQIK--K 130 (586)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHH-hcCCC------EEEEeCCCC--ccccCCCCCccccHhhHHhhhcceEEecC--C
Confidence 4456777777888854444455544 33899 999973211 11100001111234456666666666774 7
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..+++.|+..+..++ |||.|++=
T Consensus 131 ~~~i~~~i~~A~~~A~~~~~GPV~l~iP 158 (586)
T PRK06276 131 PEEIPEIFRAAFEIAKTGRPGPVHIDLP 158 (586)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 8899999999999988875 89999984
No 186
>PLN02470 acetolactate synthase
Probab=71.61 E-value=15 Score=45.21 Aligned_cols=96 Identities=19% Similarity=0.107 Sum_probs=59.6
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|++-.=.-++||. ..+.| +|+|.-.-.. +..........+..++.+.+---...| ++
T Consensus 75 g~~gv~~~t~GPG~~N~l~gia~A~-~~~~P------vl~I~G~~~~--~~~~~~~~q~~d~~~l~~~~tk~~~~v--~~ 143 (585)
T PLN02470 75 GKVGVCIATSGPGATNLVTGLADAL-LDSVP------LVAITGQVPR--RMIGTDAFQETPIVEVTRSITKHNYLV--MD 143 (585)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHH-hcCCc------EEEEecCCCh--hhcCCCcCcccchhhhhhhheEEEEEc--CC
Confidence 3456788888888843333333333 23899 9998743211 110011111112334555555556666 48
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..++++|+..++.++ |||+|++=
T Consensus 144 ~~~i~~~l~~A~~~A~s~~~GPV~l~iP 171 (585)
T PLN02470 144 VEDIPRVIREAFFLASSGRPGPVLVDIP 171 (585)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEec
Confidence 9999999999999999886 99999984
No 187
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=71.52 E-value=16 Score=44.76 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=65.8
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. ++-.++++..|=|+...-.-++++. ..+.| +|+|+-.-... .......-..+..
T Consensus 57 mAdgyar~t--------g~~gv~~vt~GPG~~N~l~gl~~A~-~~~~P------vl~i~G~~~~~--~~~~~~~q~~d~~ 119 (574)
T PRK06466 57 MADGYARAT--------GKTGVVLVTSGPGATNAITGIATAY-MDSIP------MVVLSGQVPST--LIGEDAFQETDMV 119 (574)
T ss_pred HHHHHHHHh--------CCCEEEEECCCccHHHHHHHHHHHH-hcCCC------EEEEecCCCcc--ccCCCcccccchh
Confidence 455666542 4457888888888854344444443 34899 99998533211 1000111112333
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+.+---..+|+ +++.+..++++|+..++.++ |||+|++=
T Consensus 120 ~l~~~itk~s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP 162 (574)
T PRK06466 120 GISRPIVKHSFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIP 162 (574)
T ss_pred hhhhccceeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 45555555566666 89999999999999998885 89999983
No 188
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=71.27 E-value=16 Score=45.23 Aligned_cols=96 Identities=15% Similarity=0.085 Sum_probs=60.0
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|++-.-.-++|+. ..++| +|+|+-.-.. +..........+..++.+.+---..+|+ +
T Consensus 93 g~~gv~~~t~GPG~~N~l~gl~~A~-~~~~P------llvI~G~~~~--~~~~~~~~q~~d~~~l~~~~tk~s~~v~--~ 161 (612)
T PRK07789 93 GRVGVCMATSGPGATNLVTPIADAN-MDSVP------VVAITGQVGR--GLIGTDAFQEADIVGITMPITKHNFLVT--D 161 (612)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEecCCCc--cccCCCcCcccchhhhhhcceeEEEEcC--C
Confidence 4456777777888854444445542 34899 9999853221 1100111111233445555555555664 8
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..+++.|+..++.++ |||+|++=
T Consensus 162 ~~~i~~~l~~A~~~A~~~~~GPV~l~iP 189 (612)
T PRK07789 162 ADDIPRVIAEAFHIASTGRPGPVLVDIP 189 (612)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEc
Confidence 9999999999999988874 89999883
No 189
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=70.70 E-value=19 Score=44.28 Aligned_cols=96 Identities=15% Similarity=0.036 Sum_probs=60.0
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+.-.-+-++++. ..++| +|+|+-.=.. ...........+..++++.+---..+| .+
T Consensus 67 g~~gv~~~t~GPG~~n~~~gi~~A~-~~~~P------vl~I~g~~~~--~~~~~~~~q~~d~~~l~~~~tk~~~~i--~~ 135 (588)
T PRK07525 67 GRMGMVIGQNGPGITNFVTAVATAY-WAHTP------VVLVTPQAGT--KTIGQGGFQEAEQMPMFEDMTKYQEEV--RD 135 (588)
T ss_pred CCCEEEEEcCCccHHHHHHHHHHHh-hcCCC------EEEEeCCCCc--ccCCCCCCcccchhhhhhhheeEEEEC--CC
Confidence 3457788888988854445555554 33899 9999821110 000000111112334455554445555 58
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFHKDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~gPvlIel~ 547 (968)
++.+..+++.|+..++..+|||+|++=
T Consensus 136 ~~~~~~~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 136 PSRMAEVLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 899999999999999999999999983
No 190
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=70.17 E-value=20 Score=43.72 Aligned_cols=96 Identities=13% Similarity=0.109 Sum_probs=60.9
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+...-.-++||. ..++| +|+|+-.=.. ...........+..++++.+-.-..+|+ +
T Consensus 63 g~~gv~~~t~GpG~~n~l~~i~~A~-~~~~P------vl~i~g~~~~--~~~~~~~~q~~d~~~~~~~~tk~~~~v~--~ 131 (558)
T TIGR00118 63 GKVGVVLVTSGPGATNLVTGIATAY-MDSIP------MVVFTGQVPT--SLIGSDAFQEADILGITMPITKHSFQVK--S 131 (558)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHH-hcCCC------EEEEecCCCc--cccCCCCCcccChhhhhcCccceeEEeC--C
Confidence 4456777877888844334444443 23899 9999853111 1000111111233456666666777774 7
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++++..++.+|+..+..++ |||.|++=
T Consensus 132 ~~~~~~~v~~A~~~A~~~~~GPV~i~iP 159 (558)
T TIGR00118 132 AEDIPRIIKEAFHIATTGRPGPVLVDLP 159 (558)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 9999999999999888885 89999984
No 191
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=69.73 E-value=33 Score=39.72 Aligned_cols=105 Identities=15% Similarity=0.201 Sum_probs=72.9
Q ss_pred chhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchH--HHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCccc
Q psy8742 423 PVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVV--FETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSR 497 (968)
Q Consensus 423 PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv--~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~r 497 (968)
-+|.|+++| |.+.++.+ +|+|.. +|.|++| .+| +|+++.+=. |=+|-.
T Consensus 62 ~~a~GAs~a---------G~Ra~taT-------Sg~Gl~lm~E~l~~a~~~e~P------~v~v~v~R~-~p~~g~---- 114 (352)
T PRK07119 62 NMVYGAAAT---------GKRVMTSS-------SSPGISLKQEGISYLAGAELP------CVIVNIMRG-GPGLGN---- 114 (352)
T ss_pred HHHHHHHhh---------CCCEEeec-------CcchHHHHHHHHHHHHHccCC------EEEEEeccC-CCCCCC----
Confidence 567777776 33444433 678874 6888888 899 888877743 333311
Q ss_pred ccccHhHhhhh-c-----CCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCC
Q psy8742 498 SSSYCTDVARV-V-----NAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNE 556 (968)
Q Consensus 498 ss~~~td~Ak~-~-----giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne 556 (968)
+-..-.|+--+ + ..|.+..+-.|+++++.-+..|.+.+.+.+-||++=..+| .+|+.
T Consensus 115 t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (352)
T PRK07119 115 IQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMM 177 (352)
T ss_pred CcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCce
Confidence 11122444222 1 5678888899999999999999999999999999999885 36753
No 192
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=69.56 E-value=20 Score=43.93 Aligned_cols=96 Identities=15% Similarity=0.051 Sum_probs=58.3
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.|+++..|=|+.-.-+-++++. ..+.| +|+|+-. .+-...........+..++.+.+---..+| .+
T Consensus 63 g~~gv~~~t~GPG~~N~~~gla~A~-~~~~P------vl~I~g~--~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v--~~ 131 (579)
T TIGR03457 63 GRMSMVIGQNGPGVTNCVTAIAAAY-WAHTP------VVIVTPE--AGTKTIGLGGFQEADQLPMFQEFTKYQGHV--RH 131 (579)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHh-hcCCC------EEEEeCC--CccccCCCCCCcccchhhhhhcceeEEEec--CC
Confidence 4457777778888843333444443 34899 9998731 111100011111113344455444445555 58
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFHKDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~gPvlIel~ 547 (968)
++.+..+++.|+..+..++|||+|++=
T Consensus 132 ~~~~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 132 PSRMAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 889999999999988888999999983
No 193
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=69.29 E-value=21 Score=43.55 Aligned_cols=98 Identities=11% Similarity=-0.000 Sum_probs=60.2
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+...=.-++++. ..++| +|+|+-......-..........+...+.+.+---..+|+ +
T Consensus 64 g~~gv~~~t~GPG~~N~~~gia~A~-~~~~P------vl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~--~ 134 (554)
T TIGR03254 64 QKPGVCLTVSAPGFLNGLTALANAT-TNCFP------MIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVL--R 134 (554)
T ss_pred CCCEEEEEccCccHHhHHHHHHHHH-hcCCC------EEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcC--C
Confidence 3446777777888832222233332 23899 9999865432210000011111233455666666677777 7
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++++.+++.+|+..+..++ |||.|++=
T Consensus 135 ~~~~~~~i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 135 AEDIGIGIARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 9999999999999888875 79999984
No 194
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=69.22 E-value=27 Score=36.79 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=73.2
Q ss_pred CCcEEEeccccCCCccccccceeeeeccCCceee-cCCCC--CCCCCCcEeecCCcchHHHHHHhhhcccCCCCcccccc
Q psy8742 708 GIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYR-PLNNL--YPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWE 784 (968)
Q Consensus 708 g~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~-~~~~l--~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE 784 (968)
..+.||+|.| .|-|.|-.-++|... ..|. +...= .........+.+.|||-.+-|+--||.+.|-..|.
T Consensus 16 ~~nfRvf~PD---Et~SNrL~~v~e~t~--r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~LtGrhglf--- 87 (179)
T PF03894_consen 16 PRNFRVFGPD---ETASNRLNAVFEVTN--RQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLTGRHGLF--- 87 (179)
T ss_dssp TTTEEEEESS----TTTTT-GGGGGT----EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHTT-EEEE---
T ss_pred CCcceeECCC---cchhhchHHHHHhcc--cccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhcCCcccc---
Confidence 5578999999 456777766665541 1221 11000 01112345667999999999999999999988775
Q ss_pred chhhhhHhhhhHHHHHHHh----hhccccccc-cCcEEEc-CccCC--CCCcccCCCh-HHHHhcccCCCCcccccccch
Q psy8742 785 AQFGDFNNTAQCIIDQFIS----SGQAKWVRQ-SGLVMLL-PHGLE--GMGPEHSSAR-LERFLQMSDDEPIRVILVLVP 855 (968)
Q Consensus 785 ~qfgDF~~~aQvi~Dq~i~----~~~~kw~~~-~~lv~~l-P~G~~--g~GpeHSs~r-~er~lql~~~~~~~~p~~~~~ 855 (968)
+-|=-|+..---|+.|.+- +.+..|+.. .+|.+++ -|.++ --|--|-.-- ++.++... |
T Consensus 88 ~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~-------~----- 155 (179)
T PF03894_consen 88 ASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKK-------P----- 155 (179)
T ss_dssp EEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--------------
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcC-------c-----
Confidence 2333465443334666542 346777754 3466655 45663 2344444432 23333211 1
Q ss_pred hhhhhhcccCCCeEEEecCCHhHHHHHHHHHH
Q psy8742 856 IEFAVRQLHDINWIIANCTTPANLFHILRRQI 887 (968)
Q Consensus 856 ~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~ 887 (968)
.-++|..|..+--.--.+..++
T Consensus 156 ----------~~~RvylPpDANtlLav~~~cl 177 (179)
T PF03894_consen 156 ----------DVVRVYLPPDANTLLAVMDHCL 177 (179)
T ss_dssp ----------T-EEEEE-SSHHHHHHHHHHHH
T ss_pred ----------ccceeecCCcHhHHHHHHHHHh
Confidence 2688999877655554444444
No 195
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=69.13 E-value=24 Score=43.03 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=60.8
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+ .++-.++++..|=|+.-.-.-++||. ..+.| +|+|+-.-.... .........+..
T Consensus 54 mAdgyar~--------tgkpgv~~~t~GPG~~N~l~~l~~A~-~~~~P------vl~i~G~~~~~~--~~~~~~q~~d~~ 116 (549)
T PRK06457 54 AASVEAKI--------TGKPSACMGTSGPGSIHLLNGLYDAK-MDHAP------VIALTGQVESDM--IGHDYFQEVNLT 116 (549)
T ss_pred HHHHHHHH--------hCCCeEEEeCCCCchhhhHHHHHHHH-hcCCC------EEEEecCCCccc--cCCCcccccchh
Confidence 35565554 24557777788888843333444443 34899 999985422110 000111111222
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~ 547 (968)
++.+.+ --...--.+|+.+..++++|+..+...+|||+|++=
T Consensus 117 ~l~~~v--tk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP 158 (549)
T PRK06457 117 KLFDDV--AVFNQILINPENAEYIIRRAIREAISKRGVAHINLP 158 (549)
T ss_pred hhhccc--eeEEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 333322 223344458888999999999888888899999984
No 196
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=68.23 E-value=23 Score=43.34 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=57.2
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.|+++..|=|+.-.-.-++||. ..++| +|+|+-.=.. ...........+..++.+.+---...|+ +
T Consensus 73 g~~gv~~~t~GpG~~N~~~gl~~A~-~~~~P------vl~I~G~~~~--~~~~~~~~Q~~d~~~l~~~vtk~~~~v~--~ 141 (578)
T PRK06112 73 GKVAVVTAQNGPAATLLVAPLAEAL-KASVP------IVALVQDVNR--DQTDRNAFQELDHIALFQSCTKWVRRVT--V 141 (578)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCcc--ccCCCCCccccChhhhhccccceEEEeC--C
Confidence 4456777777777722222233332 33899 9999843111 0000111111233455555555555664 7
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
|+.+...++.|+..++.++ |||.|++=
T Consensus 142 ~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (578)
T PRK06112 142 AERIDDYVDQAFTAATSGRPGPVVLLLP 169 (578)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 9999999999999988885 89999984
No 197
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=68.00 E-value=24 Score=43.39 Aligned_cols=96 Identities=18% Similarity=0.134 Sum_probs=58.9
Q ss_pred CCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCC
Q psy8742 440 EGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSD 519 (968)
Q Consensus 440 ~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGn 519 (968)
.|+..|+++..|=|+ ++-=..--+-.+...| +|.|.= |..-+.--.+.....+...+.+.+---.+.|.
T Consensus 62 TGkpgV~~~tsGPGa-tN~~tgla~A~~d~~P------ll~itG--qv~~~~~g~~afQe~D~~~l~~p~tk~~~~v~-- 130 (550)
T COG0028 62 TGKPGVCLVTSGPGA-TNLLTGLADAYMDSVP------LLAITG--QVPTSLIGTDAFQEVDQVGLFRPITKYNFEVR-- 130 (550)
T ss_pred cCCCEEEEECCCCcH-HHHHHHHHHHHhcCCC------EEEEeC--CccccccCcchhhhcchhhHhhhhheeEEEeC--
Confidence 456678888888888 4322222222244788 776653 22222111122222233444444444555665
Q ss_pred CHHHHHHHHHHHHHHhhcCC-CcEEEEE
Q psy8742 520 DPEAVIHVCNLAAEWRNTFH-KDVVIDI 546 (968)
Q Consensus 520 D~eAV~~a~~~Ave~rr~~~-gPvlIel 546 (968)
+++.+-+++++|+..+..++ |||+|++
T Consensus 131 ~~~~ip~~i~~Af~~A~sgrpGpv~i~i 158 (550)
T COG0028 131 SPEDIPEVVARAFRIALSGRPGPVVVDL 158 (550)
T ss_pred CHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 88999999999999999999 9999998
No 198
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=67.61 E-value=21 Score=43.72 Aligned_cols=95 Identities=18% Similarity=0.143 Sum_probs=58.9
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.|+++..|=|++..-.-++++. ..++| +|+|+-.-.. +..........+...+++.+---..+|+ +
T Consensus 66 g~~gv~~~t~GpG~~n~l~gia~A~-~~~~P------vl~i~G~~~~--~~~~~~~~q~~d~~~~~~~itk~~~~v~--~ 134 (572)
T PRK08979 66 GKVGVVLVTSGPGATNTITGIATAY-MDSIP------MVVLSGQVPS--NLIGNDAFQECDMIGISRPVVKHSFLVK--D 134 (572)
T ss_pred CCCeEEEECCCchHhHHHHHHHHHh-hcCCC------EEEEecCCCc--cccCCCCCcccchhHHhhhceeEEEecC--C
Confidence 3446777777888843333444443 33899 9988742111 1000111111233445565555566776 8
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDI 546 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel 546 (968)
++.+...++.|+..++.++ |||+|++
T Consensus 135 ~~~~~~~l~~A~~~A~~~~~GPV~l~i 161 (572)
T PRK08979 135 AEDIPEIIKKAFYIASTGRPGPVVIDL 161 (572)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEec
Confidence 9999999999999998876 8999997
No 199
>PRK07586 hypothetical protein; Validated
Probab=67.48 E-value=21 Score=43.07 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=56.7
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+.-.-+-++++. ..++| +|+|+-.-.... ......-..+..++++.+---..+|+ +
T Consensus 63 g~~gv~~~t~GPG~~N~~~gl~~A~-~~~~P------vl~i~G~~~~~~--~~~~~~q~~d~~~~~~~vtk~~~~v~--~ 131 (514)
T PRK07586 63 GKPAATLLHLGPGLANGLANLHNAR-RARTP------IVNIVGDHATYH--RKYDAPLTSDIEALARPVSGWVRRSE--S 131 (514)
T ss_pred CCCEEEEecccHHHHHHHHHHHHHH-hcCCC------EEEEecCCchhc--cCCCcccccchhhhhccccceeeecC--C
Confidence 4446777778888732222222332 23899 999986422111 00010111123344444443444444 8
Q ss_pred HHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTF-HKDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~-~gPvlIel~ 547 (968)
++.+.+++++|+..++.+ .|||+|++=
T Consensus 132 ~~~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (514)
T PRK07586 132 AADVAADAAAAVAAARGAPGQVATLILP 159 (514)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 999999999999999998 599999984
No 200
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=66.72 E-value=21 Score=44.00 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=55.3
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcC-CcEEEEeCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVN-APIFHVNSD 519 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~g-iP~~hVDGn 519 (968)
++-.++++..|=|+...=.-+++|. ..+.| +|+|+-. ..-+..........+..++.+.+- .-...|+
T Consensus 66 g~~gv~~~t~GPG~~n~~~gi~~A~-~d~vP------vl~I~G~--~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~-- 134 (597)
T PRK08273 66 GEVGVCLATSGPGAIHLLNGLYDAK-LDHVP------VVAIVGQ--QARAALGGHYQQEVDLQSLFKDVAGAFVQMVT-- 134 (597)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHH-hcCCC------EEEEecC--CchhhcCCCCCCccCHHHHHHHHHHHHeeEeC--
Confidence 3446777777888843223333332 33899 9999832 110000011111112233444433 3444554
Q ss_pred CHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q psy8742 520 DPEAVIHVCNLAAEWRNTFHKDVVIDIV 547 (968)
Q Consensus 520 D~eAV~~a~~~Ave~rr~~~gPvlIel~ 547 (968)
+++.+..++.+|+..+..++|||+|++=
T Consensus 135 ~~~~~~~~l~~A~~~A~~~~gPV~i~iP 162 (597)
T PRK08273 135 VPEQLRHLVDRAVRTALAERTVTAVILP 162 (597)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 7888888888999888888999999874
No 201
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=66.54 E-value=26 Score=42.82 Aligned_cols=96 Identities=15% Similarity=0.085 Sum_probs=55.7
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+.-.-.-++||. ..++| +|+|+-.=.. ...........+..++.+.+=--...| ++
T Consensus 70 g~~gv~~~t~GpG~~N~~~gi~~A~-~~~~P------vl~i~g~~~~--~~~~~~~~q~~d~~~l~~~~tk~~~~v--~~ 138 (557)
T PRK08199 70 GRPGICFVTRGPGATNASIGVHTAF-QDSTP------MILFVGQVAR--DFREREAFQEIDYRRMFGPMAKWVAEI--DD 138 (557)
T ss_pred CCCEEEEeCCCccHHHHHHHHHHHh-hcCCC------EEEEecCCcc--ccCCCCcccccCHHHhhhhhhceeeec--CC
Confidence 4456777777887743233333332 23899 9999742111 100011111112233344333334455 68
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..++.+|+..+..++ |||.|++=
T Consensus 139 ~~~~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 139 AARIPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 9999999999999998885 89999873
No 202
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=66.25 E-value=29 Score=43.01 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=56.8
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.|+++..|=|+.-.-.-++++. +.+.| +|+|+-+ ...+....+.....+...+.+.+---...|+ +
T Consensus 84 gk~gv~~~t~GPG~~n~l~gl~~A~-~d~~P------vl~i~G~--~~~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~--~ 152 (616)
T PRK07418 84 GKVGVCFGTSGPGATNLVTGIATAQ-MDSVP------MVVITGQ--VPRPAIGTDAFQETDIFGITLPIVKHSYVVR--D 152 (616)
T ss_pred CCCeEEEECCCccHHHHHHHHHHHH-hcCCC------EEEEecC--CCccccCCCCcccccHHHHhhhcceeEEEeC--C
Confidence 4456777777888843333333332 33899 9999853 1111100111111223334443333344454 8
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..++.+|+..+...+ |||+|++=
T Consensus 153 ~~~i~~~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 153 PSDMARIVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEecc
Confidence 9999999999999999887 99999873
No 203
>PRK08322 acetolactate synthase; Reviewed
Probab=65.04 E-value=29 Score=42.16 Aligned_cols=96 Identities=15% Similarity=0.056 Sum_probs=56.5
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+.-.-.-++||. ..++| +|+|+-.=... ..........+..++.+.+---..+| ++
T Consensus 62 g~~gv~~~t~GpG~~N~~~~i~~A~-~~~~P------ll~i~g~~~~~--~~~~~~~q~~d~~~~~~~~tk~~~~v--~~ 130 (547)
T PRK08322 62 GKAGVCLSTLGPGATNLVTGVAYAQ-LGGMP------MVAITGQKPIK--RSKQGSFQIVDVVAMMAPLTKWTRQI--VS 130 (547)
T ss_pred CCCEEEEECCCccHhHHHHHHHHHh-hcCCC------EEEEecccccc--ccCCCccccccHHHHhhhheeEEEEe--CC
Confidence 3456777777888843333334433 33899 99988432111 00011111112334444333334455 48
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..++.+|+..+..++ |||+|++=
T Consensus 131 ~~~~~~~i~~A~~~A~~~~~GPV~l~iP 158 (547)
T PRK08322 131 PDNIPEVVREAFRLAEEERPGAVHLELP 158 (547)
T ss_pred HHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 9999999999999988875 89999984
No 204
>PRK08266 hypothetical protein; Provisional
Probab=64.72 E-value=30 Score=42.03 Aligned_cols=96 Identities=8% Similarity=0.045 Sum_probs=58.6
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCc--ccc-cccHhHhhhhcCCcEEEEe
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRF--SRS-SSYCTDVARVVNAPIFHVN 517 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~--~rs-s~~~td~Ak~~giP~~hVD 517 (968)
++-.++++..|=|+.-.-+-++|+. ..+.| +|+|+-. ...+..... +.. ..+..++.+.+---...|+
T Consensus 67 g~~~v~~~t~GpG~~N~~~gi~~A~-~~~~P------vl~i~g~--~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~ 137 (542)
T PRK08266 67 GRPGVCSVVPGPGVLNAGAALLTAY-GCNSP------VLCLTGQ--IPSALIGKGRGHLHEMPDQLATLRSFTKWAERIE 137 (542)
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHH-hhCCC------EEEEecC--CChhhccCCCCcceecccHhhHHhhhcceEEEeC
Confidence 3446777777888843334444443 34899 9999842 111100000 000 1234556666655566665
Q ss_pred CCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q psy8742 518 SDDPEAVIHVCNLAAEWRNTF-HKDVVIDIV 547 (968)
Q Consensus 518 GnD~eAV~~a~~~Ave~rr~~-~gPvlIel~ 547 (968)
+++.+..+++.|+..++.+ .|||+|++=
T Consensus 138 --~~~~~~~~l~~A~~~a~~~~~GPV~l~iP 166 (542)
T PRK08266 138 --HPSEAPALVAEAFQQMLSGRPRPVALEMP 166 (542)
T ss_pred --CHHHHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 7888888999999888876 489999884
No 205
>PRK12474 hypothetical protein; Provisional
Probab=64.55 E-value=31 Score=41.79 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=62.4
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|-|.||+. ++-.++++..|=|+.-.-.-++++. ..+.| +|+|+-.....-.. ....-..+..
T Consensus 58 mAdgYaR~t--------g~~gv~~~t~GpG~~N~~~gl~~A~-~d~~P------vl~i~G~~~~~~~~--~~~~q~~d~~ 120 (518)
T PRK12474 58 AADGYGRIA--------GKPAVTLLHLGPGLANGLANLHNAR-RAASP------IVNIVGDHAVEHLQ--YDAPLTSDID 120 (518)
T ss_pred HHHHHHHHh--------CCCEEEEEccchhHhHhHHHHHHHh-hcCCC------EEEEeccCchhhcC--CCCccccCHH
Confidence 455666552 4456788888888832222223332 33899 99998643321110 0000112334
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
.+++.+---...| ++++.+..++++|+..+.+++ |||+|++=
T Consensus 121 ~~~~~vtk~~~~v--~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP 163 (518)
T PRK12474 121 GFARPVSRWVHRS--ASAGAVDSDVARAVQAAQSAPGGIATLIMP 163 (518)
T ss_pred Hhhhcccceeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 4455444344444 589999999999999888887 89999983
No 206
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=63.86 E-value=31 Score=42.17 Aligned_cols=96 Identities=18% Similarity=0.089 Sum_probs=59.1
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+.-.-+-++|+. ..+.| +|+|.-.-... ..........+...+.+.+-.-..+|+ +
T Consensus 66 g~~gv~~~t~GpG~~N~l~~i~~A~-~~~~P------vlvi~G~~~~~--~~~~~~~q~~d~~~l~~~vtk~s~~v~--~ 134 (574)
T PRK06882 66 GKVGCVLVTSGPGATNAITGIATAY-TDSVP------LVILSGQVPSN--LIGTDAFQECDMLGISRPVVKHSFIVK--N 134 (574)
T ss_pred CCCeEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEecCCCcc--ccCCCcccccchhhhhhcccceEEEeC--C
Confidence 4456777777888844444445543 34899 99987432211 000000111223445555555566775 8
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+...+.+|+..+..++ |||.|++=
T Consensus 135 ~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (574)
T PRK06882 135 AEDIPSTIKKAFYIASTGRPGPVVIDIP 162 (574)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEecC
Confidence 8999999999998887775 99999984
No 207
>PRK11269 glyoxylate carboligase; Provisional
Probab=62.53 E-value=35 Score=42.01 Aligned_cols=106 Identities=19% Similarity=0.139 Sum_probs=63.4
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. .++-.++++..|=|+.-.=+-++||. .++.| +|+|+-.-...... .......+..
T Consensus 57 mAdGYar~t-------~g~~gv~~~t~GPG~~N~l~gl~~A~-~~~~P------vl~I~G~~~~~~~~--~~~~q~~d~~ 120 (591)
T PRK11269 57 MAEGYTRAT-------AGNIGVCIGTSGPAGTDMITGLYSAS-ADSIP------ILCITGQAPRARLH--KEDFQAVDIE 120 (591)
T ss_pred HHHHHHHHc-------CCCcEEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCCccccC--CCcccccChh
Confidence 355666543 03446777777887732233333333 23899 99998543321111 0111111234
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+.+-.-...| .+++.+..+++.|+..++.++ |||.|++=
T Consensus 121 ~l~~~itk~s~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 163 (591)
T PRK11269 121 SIAKPVTKWAVTV--REPALVPRVFQQAFHLMRSGRPGPVLIDLP 163 (591)
T ss_pred hHhhcceeEEEEc--CCHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 4555444445556 589999999999999999886 89999984
No 208
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=62.10 E-value=32 Score=42.33 Aligned_cols=96 Identities=14% Similarity=0.010 Sum_probs=58.1
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+...-.-++++. ..+.| +|+|+-.-... ..........+...+.+.+--...+|+ +
T Consensus 75 g~~gv~~~t~GPG~~N~l~gl~~A~-~~~~P------vl~I~G~~~~~--~~~~~~~q~~d~~~~~~~~tk~~~~v~--~ 143 (585)
T CHL00099 75 GKVGVCFATSGPGATNLVTGIATAQ-MDSVP------LLVITGQVGRA--FIGTDAFQEVDIFGITLPIVKHSYVVR--D 143 (585)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCCcc--ccCCCCccccchhhhhcCceeEEEEeC--C
Confidence 4456777777888743333444443 34899 99997431100 000001111122334444444566675 8
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..++++|+..++.++ |||+|++=
T Consensus 144 ~~~i~~~l~~A~~~A~~~~~GPV~l~iP 171 (585)
T CHL00099 144 ARDISRIVAEAFYIAKHGRPGPVLIDIP 171 (585)
T ss_pred HHHHHHHHHHHHHHHccCCCCeEEEecC
Confidence 9999999999999988875 89999973
No 209
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=62.09 E-value=32 Score=42.16 Aligned_cols=96 Identities=16% Similarity=0.086 Sum_probs=54.6
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+.-.=.-++||. ..++| +|+|.-.-... ..........+...+.+.+-.-..+| .+
T Consensus 77 g~~gv~~~t~GPG~~N~~~gl~~A~-~~~~P------vl~ItG~~~~~--~~~~~~~q~~d~~~l~~~~tk~~~~v--~~ 145 (571)
T PRK07710 77 GKPGVVIATSGPGATNVVTGLADAM-IDSLP------LVVFTGQVATS--VIGSDAFQEADIMGITMPVTKHNYQV--RK 145 (571)
T ss_pred CCCeEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEeccCCcc--ccCCCCccccchhhhhhcccceEEec--CC
Confidence 3446777777888732222333333 23899 99987533211 00001111111222333222223334 58
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..++++|+..++.++ |||.|++=
T Consensus 146 ~~~~~~~i~~A~~~A~~~~~GPV~l~iP 173 (571)
T PRK07710 146 ASDLPRIIKEAFHIATTGRPGPVLIDIP 173 (571)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 9999999999999888885 99999985
No 210
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=61.94 E-value=22 Score=43.30 Aligned_cols=110 Identities=21% Similarity=0.124 Sum_probs=65.4
Q ss_pred cCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCccccc--CCCccc-
Q psy8742 421 VDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTT--DPRFSR- 497 (968)
Q Consensus 421 ~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT--~~~~~r- 497 (968)
...-|+|+++|.+. =+|+++||=|| +|-.=.|.-+..+..-=||+|+.||+=||-. |.....
T Consensus 427 ~vSTA~Gi~~a~~~----------ptv~liGDLS~-----lhD~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~ 491 (566)
T COG1165 427 TVSTALGIARATQK----------PTVALIGDLSF-----LHDLNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEP 491 (566)
T ss_pred hHHHHhhhhhhcCC----------ceEEEEechhh-----hhccchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcc
Confidence 34679999998765 28999999996 4543223311111111266667777777654 222222
Q ss_pred ------c---cccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecC
Q psy8742 498 ------S---SSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRR 551 (968)
Q Consensus 498 ------s---s~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~ 551 (968)
. .-+++..|++||+..-+++.- .....+...+ -.-.|=.|||++|-|-
T Consensus 492 ~fe~~F~tPh~ldF~~la~~y~l~y~~~~s~--~~l~~~~~~~----~~~~g~~viEvkt~r~ 548 (566)
T COG1165 492 VFERLFGTPHGLDFAHLAATYGLEYHRPQSW--DELGEALDQA----WRRSGTTVIEVKTDRS 548 (566)
T ss_pred hHHHhcCCCCCCCHHHHHHHhCccccccCcH--HHHHHHHhhh----ccCCCcEEEEEecChh
Confidence 1 134677889999999888753 2333333333 3345688999998763
No 211
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=61.65 E-value=35 Score=41.75 Aligned_cols=98 Identities=13% Similarity=0.036 Sum_probs=59.6
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+...=.-+++|. ..++| +|+|+-.-....--.........+..++.+.+---..+|+ +
T Consensus 71 g~~gv~~~t~GPG~~N~l~gl~~A~-~~~~P------vl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~--~ 141 (569)
T PRK09259 71 QKPGVCLTVSAPGFLNGLTALANAT-TNCFP------MIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVN--R 141 (569)
T ss_pred CCCEEEEEcCCccHHHHHHHHHHHH-hcCCC------EEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcC--C
Confidence 3446777777888843223333332 23899 9999853221100000000111233455666666677775 8
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..++.+|+..+..++ |||+|++=
T Consensus 142 ~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 142 AEDIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred HHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 9999999999999988874 89999984
No 212
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=61.06 E-value=38 Score=41.76 Aligned_cols=95 Identities=15% Similarity=0.055 Sum_probs=57.9
Q ss_pred ceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCH
Q psy8742 442 KKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDP 521 (968)
Q Consensus 442 ~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~ 521 (968)
+-.|+++..|=|+.-.-.-++++. ..+.| +|+|+-.-...... .......+..++.+.+-.-..+|. ++
T Consensus 67 ~~gv~~~t~GpG~~N~~~gla~A~-~~~~P------vl~I~G~~~~~~~~--~~~~q~~D~~~~~~~vtk~~~~v~--~~ 135 (588)
T TIGR01504 67 NIGVCIGTSGPAGTDMITGLYSAS-ADSIP------ILCITGQAPRARLH--KEDFQAVDIAAIAKPVSKMAVTVR--EA 135 (588)
T ss_pred CeEEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEecCCCccccC--CCcccccCHHHHhhhhceEEEEcC--CH
Confidence 445666667877732222233332 23899 99998433221110 011111234455665555566665 89
Q ss_pred HHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 522 EAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 522 eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
+.+..++++|+..++.++ |||+|++=
T Consensus 136 ~~i~~~i~~A~~~A~~~~~GPV~l~iP 162 (588)
T TIGR01504 136 ALVPRVLQQAFHLMRSGRPGPVLIDLP 162 (588)
T ss_pred HHHHHHHHHHHHHHccCCCCeEEEEeC
Confidence 999999999999988876 89999984
No 213
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=60.80 E-value=39 Score=41.50 Aligned_cols=96 Identities=14% Similarity=-0.002 Sum_probs=55.1
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+...-+-++++. ..++| +|+|+-.-... ..........+...+.+.+-.-...| .+
T Consensus 62 gk~gv~~~t~GPG~~n~~~~i~~A~-~~~~P------vl~I~G~~~~~--~~~~~~~q~id~~~~~~~vtk~~~~v--~~ 130 (575)
T TIGR02720 62 GKIGVCFGSAGPGATHLLNGLYDAK-EDHVP------VLALVGQVPTT--GMNMDTFQEMNENPIYADVAVYNRTA--MT 130 (575)
T ss_pred CCceEEEeCCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCccc--cCCCCCcceechhhhhhhcceEEEEe--CC
Confidence 4557788888888854444444444 33899 99998532211 00000000011122333332223333 46
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFHKDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~gPvlIel~ 547 (968)
++.+...+..|+..+...+|||.|++=
T Consensus 131 ~~~~~~~i~~A~~~A~~~~GPV~l~iP 157 (575)
T TIGR02720 131 AESLPHVIDEAIRRAYAHNGVAVVTIP 157 (575)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 888888888888887788899999984
No 214
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=60.68 E-value=23 Score=47.01 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=69.3
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCCc-cccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQI-GFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNqi-g~TT- 491 (968)
.+.|+-...++|.+.+... + -+|.++|||.|.--|.- --.|.- +.+ ++++|-+|.+ |+|-
T Consensus 468 ~~MG~~g~~~~G~a~~~~~--------~-~v~a~iGDgTf~HSG~~-al~~AV~~~~n------it~~IL~N~~tAMTGg 531 (1159)
T PRK13030 468 TQMGGEGVDWIGHAPFTET--------K-HVFQNLGDGTYFHSGSL-AIRQAVAAGAN------ITYKILYNDAVAMTGG 531 (1159)
T ss_pred eccCccchhhceeccccCC--------C-CEEEEeccchhhhcCHH-HHHHHHhcCCC------eEEEEEeCCcccccCC
Confidence 3557777778888776221 1 28999999998544443 112221 677 7777777775 7776
Q ss_pred CCCcc-cccccHhHhhhhcCCcEEEEeCCCHHH----------------HHHHHHHHHHHhhcCCCcEEEEE
Q psy8742 492 DPRFS-RSSSYCTDVARVVNAPIFHVNSDDPEA----------------VIHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 492 ~~~~~-rss~~~td~Ak~~giP~~hVDGnD~eA----------------V~~a~~~Ave~rr~~~gPvlIel 546 (968)
.+..+ .+-..++...++.|+.-+.|=-+||+. ...++++++. +..|+.+|-.
T Consensus 532 Qp~~g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~---~~~GvsViI~ 600 (1159)
T PRK13030 532 QPVDGSISVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELR---ETPGVTVLIY 600 (1159)
T ss_pred CCCCCCCCHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHh---cCCCcEEEEE
Confidence 22222 222334447779999888886677665 3445555553 5677877754
No 215
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=60.17 E-value=21 Score=41.60 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=74.3
Q ss_pred cchHHHHHHhhhcccC-CCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cCCCCC--cccCC-Ch
Q psy8742 760 LSEFGVLGFELGFSMT-NPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GLEGMG--PEHSS-AR 834 (968)
Q Consensus 760 LsE~avlG~~~G~s~~-g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~~g~G--peHSs-~r 834 (968)
-.|..-+|.+.||.|. |.+|++ =+|-.-+-|. ++-+.+-. ....++-||++++-+ |..|.. |+|.- .|
T Consensus 33 ~~E~~av~iaaG~~latG~~~~v--~mQnSGlGn~----vN~l~SL~-~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~ 105 (361)
T TIGR03297 33 ANEGAAVGLAAGAYLATGKRAAV--YMQNSGLGNA----VNPLTSLA-DTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGR 105 (361)
T ss_pred CCchHHHHHHHHHHHhcCCccEE--EEecCchhhh----hhHHHhhc-cccccCcCeeEEEecCCCCCCCCCchhhHHhH
Confidence 3488899999999999 999999 6676666552 44443321 233456788888754 444422 78865 32
Q ss_pred -HHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEe-cCCHhHHHHHHHHHHhcC--CCCcEEEEecccCcC
Q psy8742 835 -LERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIAN-CTTPANLFHILRRQIALP--FRKPLVLMTPKSLLR 905 (968)
Q Consensus 835 -~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~-pstpa~~~hlLr~q~~~~--~r~Pli~~~pK~Llr 905 (968)
.++.|..+ |+.... |.++.+....|.+++..- -.+|+.++-+|..+-
T Consensus 106 ~t~~lL~~~------------------------~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~~ 156 (361)
T TIGR03297 106 ITLSLLDAL------------------------EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTFA 156 (361)
T ss_pred HHHHHHHHc------------------------CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 46677443 333333 466777666666655422 249999999999873
No 216
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=60.04 E-value=43 Score=41.29 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=60.1
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccc---cc
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRS---SS 500 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rs---s~ 500 (968)
.|.|.||+. ++-.++++..|=|++-.-.-++++. ..+.| +|+|.-. +......+. ..
T Consensus 74 ~AdgYar~t--------g~~gv~~~t~GpG~~N~l~gl~~A~-~~~~P------vl~i~G~-----~~~~~~~~~~~q~~ 133 (587)
T PRK06965 74 AADGYARAT--------GKVGVALVTSGPGVTNAVTGIATAY-MDSIP------MVVISGQ-----VPTAAIGQDAFQEC 133 (587)
T ss_pred HHHHHHHHh--------CCCeEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEecC-----CCccccCCCCcccc
Confidence 455666553 3446677767777732222233332 23899 9988621 111111111 11
Q ss_pred cHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 501 YCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 501 ~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
+..++.+.+---..+|. +++++...+..|+..++.++ |||.|++=
T Consensus 134 d~~~l~~~itk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 179 (587)
T PRK06965 134 DTVGITRPIVKHNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIP 179 (587)
T ss_pred cHHHHhcCCcceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 23344555555556665 89999999999999998885 89999983
No 217
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=59.95 E-value=42 Score=41.04 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=56.1
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|....-+-++++. ..+.| +|+|.-. ...........-..+...+.+.+---...| ++
T Consensus 65 g~~gv~~~t~GpG~~n~~~gla~A~-~~~~P------vl~i~G~--~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v--~~ 133 (563)
T PRK08527 65 GKVGVAIVTSGPGFTNAVTGLATAY-MDSIP------LVLISGQ--VPNSLIGTDAFQEIDAVGISRPCVKHNYLV--KS 133 (563)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEecC--CCccccCCCCCcccchhhhhhcccceEEEc--CC
Confidence 3456777777887743334444443 23899 8888731 111100000000112223344443344455 69
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
|+.+..++++|+..++.++ |||.|++=
T Consensus 134 ~~~i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 134 IEELPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 9999999999999998877 89999984
No 218
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=59.62 E-value=56 Score=32.74 Aligned_cols=115 Identities=13% Similarity=0.189 Sum_probs=68.3
Q ss_pred CcEeecCCcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccC-CCCCccc
Q psy8742 752 PYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGL-EGMGPEH 830 (968)
Q Consensus 752 ~~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~-~g~GpeH 830 (968)
..+++.+- .|.+..+.+-||+..+-+ +++=.+ |.=+.++ ++.+.+... ...||+++...-. .+.+-.|
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~--v~~~~~-gpG~~n~---~~~l~~a~~----~~~P~v~i~g~~~~~~~~~~~ 109 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGAR--AMTATS-GPGLNLM---AEALYLAAG----AELPLVIVVAQRPGPSTGLPK 109 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCc--EEEeeC-cchHHHH---HHHHHHHHh----CCCCEEEEEeeCCCCCCCCCC
Confidence 57777777 999999999999998877 333333 4333334 566555432 2489999974311 2111001
Q ss_pred CCChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhc--CCCCcEEEEe
Q psy8742 831 SSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIAL--PFRKPLVLMT 899 (968)
Q Consensus 831 Ss~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~--~~r~Pli~~~ 899 (968)
.. .+.+-|... ... -..+..+++|++...+++++++. ..|.|++++.
T Consensus 110 ~~--~~~~~~~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 110 PD--QSDLMAARY-------------------GGH-PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred cC--cHHHHHHHh-------------------CCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 11 111111100 111 35677789999999999998873 3357998874
No 219
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=58.93 E-value=37 Score=41.50 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=54.9
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+.-.=.-++|+. ..+.| +|+|.-.- .............+..++.+.+---.++| .+
T Consensus 69 g~~~v~~~t~GpG~~n~~~gl~~A~-~~~~P------vl~i~G~~--~~~~~~~~~~q~~d~~~~~~~itk~s~~v--~~ 137 (561)
T PRK06048 69 GKVGVCVATSGPGATNLVTGIATAY-MDSVP------IVALTGQV--PRSMIGNDAFQEADITGITMPITKHNYLV--QD 137 (561)
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEeccC--CccccCCCCccccchhhhccCcceEEEEe--CC
Confidence 4456777777877742222333332 22899 99987321 11110001111112333444443344555 58
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..++++|+..++.++ |||.|++=
T Consensus 138 ~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 138 AKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 8999999999999888874 89999983
No 220
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.62 E-value=20 Score=36.94 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=45.5
Q ss_pred CCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 492 DPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 492 ~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
|-.+-|-+...+=.|++||+..+-++|++-+.|.+.++..++ +++||.+|+..+
T Consensus 13 p~RDkRiTTHV~LtARAfGA~gil~~~e~De~v~esv~dVv~---rwGG~F~v~~~~ 66 (179)
T COG1303 13 PERDKRITTHVALTARAFGADGILLDGEEDEKVVESVEDVVE---RWGGPFFVKFGV 66 (179)
T ss_pred ccccccchhhhhhhhHhhCCceEEEcCcccHHHHHHHHHHHH---hcCCCEEEEEcc
Confidence 445667777778889999999999999988889998888886 799999888754
No 221
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=58.42 E-value=38 Score=41.81 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=60.2
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|++..-+-++++. ..+.| +|+|.-.-.... ...+.....+...+++.+---...| ++
T Consensus 73 g~~gv~~~t~GPG~~N~l~gia~A~-~~~~P------vl~i~G~~~~~~--~~~~~~q~~d~~~l~~~vtk~~~~v--~~ 141 (595)
T PRK09107 73 GKPGVVLVTSGPGATNAVTPLQDAL-MDSIP------LVCITGQVPTHL--IGSDAFQECDTVGITRPCTKHNWLV--KD 141 (595)
T ss_pred CCCEEEEECCCccHhHHHHHHHHHh-hcCCC------EEEEEcCCChhh--cCCCCCcccchhhhhhhheEEEEEe--CC
Confidence 4457788888888855455555554 44899 999875322111 0011111112233444444444555 58
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..++..|+..++.++ |||+|++=
T Consensus 142 ~~~i~~~l~~A~~~A~s~~~GPV~l~iP 169 (595)
T PRK09107 142 VNDLARVIHEAFHVATSGRPGPVVVDIP 169 (595)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEecC
Confidence 9999999999999999985 89999883
No 222
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=58.10 E-value=40 Score=41.35 Aligned_cols=96 Identities=11% Similarity=0.101 Sum_probs=57.3
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+...=.-++++. ..++| +|+|.-.-... .......-..+..++++.+-.-..+|+ +
T Consensus 72 g~~gv~~~t~GPG~~n~~~gla~A~-~~~~P------vl~i~G~~~~~--~~~~~~~q~~d~~~~~~~itk~s~~v~--~ 140 (566)
T PRK07282 72 GKLGVAVVTSGPGATNAITGIADAM-SDSVP------LLVFTGQVARA--GIGKDAFQEADIVGITMPITKYNYQIR--E 140 (566)
T ss_pred CCCeEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEecccccc--cCCCCCccccChhchhcCCCceeEEcC--C
Confidence 3446777777888843222333332 23899 99988542211 000011111122334455555555664 8
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+..++..|+..++.++ |||+|++=
T Consensus 141 ~~~~~~~l~~A~~~A~~~~~GPV~l~iP 168 (566)
T PRK07282 141 TADIPRIITEAVHIATTGRPGPVVIDLP 168 (566)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 9999999999999998885 99999884
No 223
>PRK07524 hypothetical protein; Provisional
Probab=57.85 E-value=59 Score=39.45 Aligned_cols=98 Identities=14% Similarity=0.055 Sum_probs=59.3
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccC-CCcccccccHhHhhhhcCCcEEEEeCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTD-PRFSRSSSYCTDVARVVNAPIFHVNSD 519 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~-~~~~rss~~~td~Ak~~giP~~hVDGn 519 (968)
++-.++++..|=|+...-+-++++. ..++| +|+|+-......-.. ........+..++.+.+-.-...|+
T Consensus 63 g~~gv~~~t~GpG~~n~~~gi~~A~-~~~~P------vl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~-- 133 (535)
T PRK07524 63 GKPGVCFIITGPGMTNIATAMGQAY-ADSIP------MLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLM-- 133 (535)
T ss_pred CCCeEEEECCCccHHHHHHHHHHHH-hcCCC------EEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeC--
Confidence 4446777777888843333333333 23899 999985432110000 0000011234455665555555554
Q ss_pred CHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q psy8742 520 DPEAVIHVCNLAAEWRNTF-HKDVVIDIV 547 (968)
Q Consensus 520 D~eAV~~a~~~Ave~rr~~-~gPvlIel~ 547 (968)
+++.+..++.+|+..++.+ .|||+|++=
T Consensus 134 ~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 134 SAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 8999999999999999987 589999884
No 224
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=57.06 E-value=38 Score=45.04 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=69.6
Q ss_pred CccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHh--CCCCCCCcccEEEEEEcCC-ccccc-C
Q psy8742 417 HLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHL--SDLPDYTTHGTIHIVVNNQ-IGFTT-D 492 (968)
Q Consensus 417 hLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNl--A~LP~y~~gGvIfVVeNNq-ig~TT-~ 492 (968)
+.|+-...++|.+.+.. + .-+|.+.|||.|.--|.-. -.|. ++.+ ++++|-.|. .|+|- .
T Consensus 482 ~MG~eg~~~~G~a~f~~--------~-~hv~a~iGDgTffHSG~~a-l~~AV~~~~n------it~~IL~N~~vAMTGgQ 545 (1165)
T PRK09193 482 QMGGEGVPWIGQAPFTD--------E-KHVFQNLGDGTYFHSGLLA-IRAAVAAGVN------ITYKILYNDAVAMTGGQ 545 (1165)
T ss_pred ccCCcchhhceeccccC--------C-CcEEEEeccccchhcCHHH-HHHHHhcCCC------eEEEEEeCCcccccCCC
Confidence 45666666667666421 1 2289999999985444432 2222 1666 666666665 57776 2
Q ss_pred CCc-ccccccHhHhhhhcCCcEEEEeCCCHHHH-----------------HHHHHHHHHHhhcCCCcEEEEE
Q psy8742 493 PRF-SRSSSYCTDVARVVNAPIFHVNSDDPEAV-----------------IHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 493 ~~~-~rss~~~td~Ak~~giP~~hVDGnD~eAV-----------------~~a~~~Ave~rr~~~gPvlIel 546 (968)
+.. ..+...+++..++.|+.-+.|=-+||+.. ..++++++. +..|+.+|-.
T Consensus 546 ~~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr---~~~GvsViI~ 614 (1165)
T PRK09193 546 PVDGGLSVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELR---EIPGVTVLIY 614 (1165)
T ss_pred CCCCCcchhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHh---cCCCcEEEEE
Confidence 222 23556678888999998887766777765 455565553 5778877754
No 225
>PRK05858 hypothetical protein; Provisional
Probab=56.28 E-value=50 Score=40.21 Aligned_cols=105 Identities=10% Similarity=-0.030 Sum_probs=61.8
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. ++-.++++..|=|+...-.-++|+. ..+.| +|+|.-.-... ......+...+..
T Consensus 57 ~AdGyar~t--------g~~gv~~~t~GpG~~n~~~~i~~A~-~~~~P------vl~i~g~~~~~--~~~~~~~q~~d~~ 119 (542)
T PRK05858 57 AAEAWAKLT--------RVPGVAVLTAGPGVTNGMSAMAAAQ-FNQSP------LVVLGGRAPAL--RWGMGSLQEIDHV 119 (542)
T ss_pred HHHHHHHhc--------CCCeEEEEcCCchHHHHHHHHHHHH-hcCCC------EEEEeCCCCcc--cCCCCCCcccchh
Confidence 355655552 3446677766777743334444443 34899 99887432111 0001111112334
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTF-HKDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~-~gPvlIel~ 547 (968)
++.+.+---..+|+ +++.+..++..|+.-+..+ .|||+|++=
T Consensus 120 ~l~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 162 (542)
T PRK05858 120 PFVAPVTKFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFP 162 (542)
T ss_pred hhhhhhhceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 45555555566664 6889999999999888776 489999884
No 226
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=54.31 E-value=53 Score=40.40 Aligned_cols=94 Identities=11% Similarity=-0.060 Sum_probs=51.8
Q ss_pred ceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCH
Q psy8742 442 KKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDP 521 (968)
Q Consensus 442 ~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~ 521 (968)
+-.++++..|=|+.-.-+-++|+. ..+.| +|+|.-.-. .+..........+..++.+.+---...|+ ++
T Consensus 66 k~~v~~v~~GpG~~N~~~gl~~A~-~~~~P------vl~I~G~~~--~~~~~~~~~Qe~d~~~l~~~~tk~~~~v~--~~ 134 (578)
T PRK06546 66 KLAVCAGSCGPGNLHLINGLYDAH-RSGAP------VLAIASHIP--SAQIGSGFFQETHPDRLFVECSGYCEMVS--SA 134 (578)
T ss_pred CceEEEECCCCcHHHHHHHHHHHH-hcCCC------EEEEeCCCC--ccccCCCCccccChhhhcccceeeEeEeC--CH
Confidence 345666666777732223344443 34899 998874211 00000000000111233333333344454 78
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEE
Q psy8742 522 EAVIHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 522 eAV~~a~~~Ave~rr~~~gPvlIel 546 (968)
+.+..+++.|+..+....|||.|++
T Consensus 135 ~~~~~~i~~A~~~A~~~~GPV~l~l 159 (578)
T PRK06546 135 EQAPRVLHSAIQHAVAGGGVSVVTL 159 (578)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 8888888888888888789999997
No 227
>PRK08617 acetolactate synthase; Reviewed
Probab=54.04 E-value=55 Score=39.92 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=56.4
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+.-.-.-++||. ..+.| +|+|.-....... ........+..++.+.+---..+| ++
T Consensus 66 g~~gv~~vt~GpG~~N~l~gl~~A~-~~~~P------vlvisG~~~~~~~--~~~~~q~~d~~~l~~~~tk~~~~v--~~ 134 (552)
T PRK08617 66 GKPGVVLVTSGPGVSNLATGLVTAT-AEGDP------VVAIGGQVKRADR--LKRTHQSMDNVALFRPITKYSAEV--QD 134 (552)
T ss_pred CCCEEEEECCCCcHhHhHHHHHHHh-hcCCC------EEEEecCCccccc--CCCCccccchhhhhhhhcceEEEe--CC
Confidence 4456777777888832222233332 23899 9988742211000 000011112334455554455566 48
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
|+.+..++..|+..+..++ |||+|++=
T Consensus 135 ~~~~~~~i~~A~~~a~~~~~GPV~l~iP 162 (552)
T PRK08617 135 PDNLSEVLANAFRAAESGRPGAAFVSLP 162 (552)
T ss_pred HHHHHHHHHHHHHHHccCCCCcEEEeCh
Confidence 9999999999999888875 79999974
No 228
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=52.94 E-value=48 Score=44.43 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=69.9
Q ss_pred cchHHHHHHhhhcccCCCCccccccchhhhhHhhh--hHHHHHHHhhhccccccccCcEEEcCc-cCCCC----CcccCC
Q psy8742 760 LSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTA--QCIIDQFISSGQAKWVRQSGLVMLLPH-GLEGM----GPEHSS 832 (968)
Q Consensus 760 LsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~a--Qvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~~g~----GpeHSs 832 (968)
=||.+.+|..+|++..|-+..+ |.-+. =.|+-.+..-+ +...|+||-... ++.+. .+.||.
T Consensus 58 EsE~~A~~av~GA~~aGara~T--------~TSs~GL~LM~e~l~~~a----g~~~P~Vi~va~R~~~~~~~~i~~dh~D 125 (1165)
T TIGR02176 58 QSEAGAAGAVHGALQTGALTTT--------FTASQGLLLMIPNMYKIA----GELLPCVFHVSARAIAAHALSIFGDHQD 125 (1165)
T ss_pred cchHHHHHHHHhHhhcCCCEEE--------ecChhHHHHHHHHHHHHH----hccCCEEEEEecCCCCCCCCccCCCchH
Confidence 4899999999999999988877 33222 11233331111 125799998764 33221 356666
Q ss_pred ChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHh--cCCCCcEEEEecccCc
Q psy8742 833 ARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIA--LPFRKPLVLMTPKSLL 904 (968)
Q Consensus 833 ~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~--~~~r~Pli~~~pK~Ll 904 (968)
. . ++++.|+.|+.|+|+.+++++-..+.. ..+|.|+|+|..-..+
T Consensus 126 v-----~----------------------~~R~~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~t 172 (1165)
T TIGR02176 126 V-----M----------------------AARQTGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRT 172 (1165)
T ss_pred H-----H----------------------HhhcCCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCcee
Confidence 4 1 123349999999999999997766643 4578999999886443
No 229
>PRK06154 hypothetical protein; Provisional
Probab=52.84 E-value=45 Score=40.91 Aligned_cols=93 Identities=15% Similarity=0.047 Sum_probs=55.6
Q ss_pred ceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCH
Q psy8742 442 KKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDP 521 (968)
Q Consensus 442 ~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~ 521 (968)
+-.++++..|=|++..-+-++++. ..+.| +|+|+-.....-. .........++++.+---..+|+ ++
T Consensus 81 ~~gv~~~t~GPG~~N~~~gla~A~-~~~~P------vl~i~G~~~~~~~----~~~~~~d~~~~~~~vtk~~~~v~--~~ 147 (565)
T PRK06154 81 RVGVFAVQYGPGAENAFGGVAQAY-GDSVP------VLFLPTGYPRGST----DVAPNFESLRNYRHITKWCEQVT--LP 147 (565)
T ss_pred CCEEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEeCCCCcccc----cCCCCcchhhhHhhcceeEEECC--CH
Confidence 346666677888843333333333 34899 9999854321110 00001122334444433444554 89
Q ss_pred HHHHHHHHHHHHHhhcC-CCcEEEEEE
Q psy8742 522 EAVIHVCNLAAEWRNTF-HKDVVIDIV 547 (968)
Q Consensus 522 eAV~~a~~~Ave~rr~~-~gPvlIel~ 547 (968)
+.+..++..|+..++.+ .|||+|++=
T Consensus 148 ~~~~~~i~~A~~~A~s~~~GPV~l~iP 174 (565)
T PRK06154 148 DEVPELMRRAFTRLRNGRPGPVVLELP 174 (565)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEecc
Confidence 99999999999998887 489999984
No 230
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=51.65 E-value=70 Score=39.26 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=27.7
Q ss_pred ccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEE
Q psy8742 863 LHDINWIIANCTTPANLFHILRRQIALPFRKPLVLM 898 (968)
Q Consensus 863 ~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~ 898 (968)
.+..|+.-....|+++....|++++..+ +|.||=
T Consensus 493 A~a~G~~~~~v~~~~eL~~al~~a~~~~--~p~lIe 526 (574)
T PRK09124 493 AEACGITGIRVEKASELDGALQRAFAHD--GPALVD 526 (574)
T ss_pred HHHCCCeEEEeCCHHHHHHHHHHHHhCC--CCEEEE
Confidence 3444888888899999999999999876 887763
No 231
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=51.01 E-value=67 Score=39.63 Aligned_cols=89 Identities=17% Similarity=0.235 Sum_probs=63.6
Q ss_pred cCcch--HHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhc-----CCcEEEEeCCCHHHHH
Q psy8742 456 CGQGV--VFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVV-----NAPIFHVNSDDPEAVI 525 (968)
Q Consensus 456 sgQGv--v~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~-----giP~~hVDGnD~eAV~ 525 (968)
+|+|. -+|.|.+| .+| +|.++.|- -|-+|+..- +. .-+|+--+. +.|.+.+...|+.+++
T Consensus 268 Sg~Gl~lm~E~l~~a~~~~~P------~Vi~~~~R-~gpstg~~t-~~--eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~ 337 (562)
T TIGR03710 268 SGPGFALMTEALGLAGMTETP------LVIVDVQR-GGPSTGLPT-KT--EQSDLLFALYGGHGEFPRIVLAPGSPEECF 337 (562)
T ss_pred CCCChhHhHHHHhHHHhccCC------EEEEEccc-CCCCCCCCC-Cc--cHHHHHHHhcCCCCCcCceEEcCCCHHHHH
Confidence 67776 56888887 899 77777654 455553111 11 113332222 5677888899999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeecCCCCCC
Q psy8742 526 HVCNLAAEWRNTFHKDVVIDIVSYRRNGHNE 556 (968)
Q Consensus 526 ~a~~~Ave~rr~~~gPvlIel~tYR~~GHne 556 (968)
..+.+|.+.+.+++-||+|=..+|. +|+.
T Consensus 338 d~~~~Af~lAe~~~~PViv~~D~~l--~~~~ 366 (562)
T TIGR03710 338 YLAIEAFNLAEKYQTPVIVLSDQYL--ANSY 366 (562)
T ss_pred HHHHHHHHHHHHhcCCEEEEechHH--hCCc
Confidence 9999999999999999999999985 5643
No 232
>KOG2733|consensus
Probab=50.60 E-value=35 Score=39.72 Aligned_cols=85 Identities=18% Similarity=0.299 Sum_probs=60.2
Q ss_pred EEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhh---------cCCcEE
Q psy8742 444 VMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARV---------VNAPIF 514 (968)
Q Consensus 444 ~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~---------~giP~~ 514 (968)
..=++++|--.|||+=+|-|+++.-.++ |=+||+-- |+-.-+.++.+- -..|++
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~------------~~slavAG-----Rn~~KL~~vL~~~~~k~~~~ls~~~i~ 67 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFE------------GLSLAVAG-----RNEKKLQEVLEKVGEKTGTDLSSSVIL 67 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhccc------------CceEEEec-----CCHHHHHHHHHHHhhccCCCcccceEE
Confidence 3457889999999999999999977666 33444432 333334443321 145689
Q ss_pred EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe-ecCCCC
Q psy8742 515 HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS-YRRNGH 554 (968)
Q Consensus 515 hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t-YR~~GH 554 (968)
.+|++|+....+-++.| -|+|.+++ ||+||-
T Consensus 68 i~D~~n~~Sl~emak~~---------~vivN~vGPyR~hGE 99 (423)
T KOG2733|consen 68 IADSANEASLDEMAKQA---------RVIVNCVGPYRFHGE 99 (423)
T ss_pred EecCCCHHHHHHHHhhh---------EEEEeccccceecCc
Confidence 99999999887766655 48999998 999984
No 233
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=50.01 E-value=71 Score=38.76 Aligned_cols=105 Identities=13% Similarity=0.067 Sum_probs=58.9
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCccc-ccccH
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSR-SSSYC 502 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~r-ss~~~ 502 (968)
.|.|.||+ .++..++++..|=|....-.-++|+. ..+.| +|+|+-.- ..+....... ...+.
T Consensus 63 ~Adgyar~--------tg~~~v~~vt~gpG~~N~~~gia~A~-~~~~P------vl~i~g~~--~~~~~~~~~~~~~~d~ 125 (530)
T PRK07092 63 MADGYAQA--------TGNAAFVNLHSAAGVGNAMGNLFTAF-KNHTP------LVITAGQQ--ARSILPFEPFLAAVQA 125 (530)
T ss_pred HHHHHHHH--------hCCceEEEeccCchHHHHHHHHHHHh-hcCCC------EEEEecCC--cccccCccchhcccCH
Confidence 45565554 34556777777777632222233332 23899 99887421 1111000000 00122
Q ss_pred hHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 503 TDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 503 td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
.++.+.+---...| .+++.+.+++..|+..++.++ |||+|++=
T Consensus 126 ~~l~~~~tk~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (530)
T PRK07092 126 AELPKPYVKWSIEP--ARAEDVPAAIARAYHIAMQPPRGPVFVSIP 169 (530)
T ss_pred HHhhcccccceeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 33444443334455 689999999999999998886 79999884
No 234
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=49.56 E-value=67 Score=39.19 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=51.3
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccc-cCCCcccccc---cHhHhhhhcCCcEEEE
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFT-TDPRFSRSSS---YCTDVARVVNAPIFHV 516 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~T-T~~~~~rss~---~~td~Ak~~giP~~hV 516 (968)
++-.++++..|=|++..=.-++++. ..++| +|+|+-.-..... .......... ...++.+.+---...|
T Consensus 62 g~~gv~~~t~GpG~~n~~~gia~A~-~~~~P------vl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v 134 (535)
T TIGR03394 62 GTLGVAAVTYGAGAFNMVNAIAGAY-AEKSP------VVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVL 134 (535)
T ss_pred CCceEEEEecchHHHhhhhHHHHHh-hcCCC------EEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEe
Confidence 4457788888888843333333332 34899 9999854321100 0000000100 1122333322223344
Q ss_pred eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q psy8742 517 NSDDPEAVIHVCNLAAEWRNTFHKDVVIDIV 547 (968)
Q Consensus 517 DGnD~eAV~~a~~~Ave~rr~~~gPvlIel~ 547 (968)
.+++.+.+++++|+..+....|||+|++=
T Consensus 135 --~~~~~~~~~~~~A~~~a~~~~gPv~i~iP 163 (535)
T TIGR03394 135 --DDPATAPAEIARVLGSARELSRPVYLEIP 163 (535)
T ss_pred --CChHHhHHHHHHHHHHHHHCCCCEEEEec
Confidence 36666666777777766677789999984
No 235
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=48.53 E-value=84 Score=38.22 Aligned_cols=96 Identities=14% Similarity=0.049 Sum_probs=55.1
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++-.++++..|=|+...-.-++++. ..+.| +|+|+-.-..... ........+..++++.+---...| ++
T Consensus 60 g~~gv~~~t~GpG~~n~l~gl~~A~-~~~~P------vl~I~G~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~i--~~ 128 (539)
T TIGR02418 60 GKPGVALVTSGPGCSNLVTGLATAN-SEGDP------VVAIGGQVKRADL--LKLTHQSMDNVALFRPITKYSAEV--QD 128 (539)
T ss_pred CCceEEEECCCCCHhHHHHHHHHHh-hcCCC------EEEEeCCCccccc--ccCcccccchhhhhhcceeeeeec--CC
Confidence 4456777777888832222233322 22899 9999863221110 011111112233444333333444 58
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 521 PEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
|+++..++..|+..+...+ |||+|++=
T Consensus 129 ~~~~~~~~~~A~~~a~~~~~GPV~l~iP 156 (539)
T TIGR02418 129 PDALSEVVANAFRAAESGKPGAAFVSLP 156 (539)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 9999999999998888875 79999983
No 236
>KOG4166|consensus
Probab=48.41 E-value=59 Score=38.53 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHhhcCC-CcEEEEE
Q psy8742 519 DDPEAVIHVCNLAAEWRNTFH-KDVVIDI 546 (968)
Q Consensus 519 nD~eAV~~a~~~Ave~rr~~~-gPvlIel 546 (968)
.|+|.+-+-..+|++.+..++ ||||+|+
T Consensus 220 kdVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 220 KDVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred ecHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 589999999999999999987 8999998
No 237
>PLN02573 pyruvate decarboxylase
Probab=45.79 E-value=61 Score=39.99 Aligned_cols=95 Identities=15% Similarity=0.026 Sum_probs=53.6
Q ss_pred eEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccc-cCC--C---cccccccHhHhhhhcCCcEEEE
Q psy8742 443 KVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFT-TDP--R---FSRSSSYCTDVARVVNAPIFHV 516 (968)
Q Consensus 443 ~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~T-T~~--~---~~rss~~~td~Ak~~giP~~hV 516 (968)
..++++..|=|++..-.-++++. ..+.| +|+|+-.-..... +.. + +........+..+.+-.-..+|
T Consensus 79 ~gv~~~t~GpG~~n~~~gla~A~-~d~~P------vl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v 151 (578)
T PLN02573 79 VGACVVTFTVGGLSVLNAIAGAY-SENLP------VICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVI 151 (578)
T ss_pred CCeEEEecCccHHHHHHHHHHHH-HhCCC------EEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEe
Confidence 46788888888832222333332 23899 9999854322110 000 0 0000001113333333344555
Q ss_pred eCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy8742 517 NSDDPEAVIHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 517 DGnD~eAV~~a~~~Ave~rr~~~gPvlIel 546 (968)
. +++.+.+.++.|+..++...|||+|++
T Consensus 152 ~--~~~~~~~~l~~A~~~A~~~~gPV~l~i 179 (578)
T PLN02573 152 N--NLEDAHELIDTAISTALKESKPVYISV 179 (578)
T ss_pred C--CHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4 788888888889888888889999998
No 238
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=43.28 E-value=1.1e+02 Score=32.57 Aligned_cols=60 Identities=17% Similarity=0.321 Sum_probs=38.3
Q ss_pred EEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCH
Q psy8742 444 VMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDP 521 (968)
Q Consensus 444 ~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~ 521 (968)
.|+|++-|+|+. -+ .+++++.-..++ ..++.||.|+. + ..+.++|+..|+|++.++-.+.
T Consensus 3 ki~vl~sg~gs~-~~-~ll~~~~~~~~~----~~I~~vvs~~~--------~----~~~~~~a~~~gIp~~~~~~~~~ 62 (200)
T PRK05647 3 RIVVLASGNGSN-LQ-AIIDACAAGQLP----AEIVAVISDRP--------D----AYGLERAEAAGIPTFVLDHKDF 62 (200)
T ss_pred eEEEEEcCCChh-HH-HHHHHHHcCCCC----cEEEEEEecCc--------c----chHHHHHHHcCCCEEEECcccc
Confidence 488999888883 23 334444333444 34666777764 1 1357889999999999765443
No 239
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=42.81 E-value=78 Score=38.90 Aligned_cols=98 Identities=11% Similarity=0.024 Sum_probs=57.1
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCC--C----ccccc-ccHhHhhhhcCCcE
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDP--R----FSRSS-SYCTDVARVVNAPI 513 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~--~----~~rss-~~~td~Ak~~giP~ 513 (968)
++-.++++..|=|+.-.=.-++|+. +.+.| +|+|+-.-.....-.. . ..... .+..++++.+---.
T Consensus 74 gk~gv~~~t~GPG~~N~~~gla~A~-~d~~P------vl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~ 146 (569)
T PRK08327 74 GKPQAVMVHVDVGTANALGGVHNAA-RSRIP------VLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWD 146 (569)
T ss_pred CCCeEEEEecCHHHHHHHHHHHHHh-hcCCC------EEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhh
Confidence 3446777777888743333344442 33899 9999864321110000 0 00000 12334444444444
Q ss_pred EEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q psy8742 514 FHVNSDDPEAVIHVCNLAAEWRNTF-HKDVVIDIV 547 (968)
Q Consensus 514 ~hVDGnD~eAV~~a~~~Ave~rr~~-~gPvlIel~ 547 (968)
..|+ +++.+..++..|+..++.+ .|||+|++=
T Consensus 147 ~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 147 YEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred cccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 4554 7899999999999998887 589999984
No 240
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=42.33 E-value=50 Score=37.85 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=59.3
Q ss_pred CccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCCcccccCCC
Q psy8742 417 HLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQIGFTTDPR 494 (968)
Q Consensus 417 hLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNqig~TT~~~ 494 (968)
|+|...-.|.|..||+.- .+.+|+---|- +|.-...--..-+ .+| ++ |+--|---.--..
T Consensus 50 hvegashmaegytra~~g---------nigvcigtsgp-agtdmitglysa~adsip------il--citgqaprarl~k 111 (592)
T COG3960 50 HVEGASHMAEGYTRATAG---------NIGVCIGTSGP-AGTDMITGLYSASADSIP------IL--CITGQAPRARLHK 111 (592)
T ss_pred HhcchhhhhcccccccCC---------ceEEEecCCCC-Cccchhhhhhhccccccc------EE--EecCCCchhhhch
Confidence 444444557777776432 45666655554 4444443322222 566 44 3322210000001
Q ss_pred cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEEe
Q psy8742 495 FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDIVS 548 (968)
Q Consensus 495 ~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel~t 548 (968)
+-...-+++.+|+-.--- -|-=..|.-|-.+.+.|+...|.++ ||||||+-.
T Consensus 112 edfqavdi~~ia~pv~kw--avtv~epalvp~v~qkafhlmrs~rpgpvlidlp~ 164 (592)
T COG3960 112 EDFQAVDIEAIAKPVSKW--AVTVREPALVPRVLQQAFHLMRSGRPGPVLIDLPF 164 (592)
T ss_pred hhhhhhhHHHhhhhhhhh--hhhhcchhhhHHHHHHHHHHHhcCCCCCeEEeccc
Confidence 111123344444432222 2333578889999999999999987 899999843
No 241
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=42.14 E-value=58 Score=38.51 Aligned_cols=97 Identities=12% Similarity=0.028 Sum_probs=50.8
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEe-CC
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVN-SD 519 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVD-Gn 519 (968)
++-.++++..|=|+...-.-++|+. .++.| +|+|+-.-..... ........+..++.+.+---...|. ..
T Consensus 62 g~~gv~~~t~GpG~~N~l~gl~~A~-~~~~P------vl~i~g~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~v~~~~ 132 (432)
T TIGR00173 62 GRPVAVVCTSGTAVANLLPAVIEAS-YSGVP------LIVLTADRPPELR--GCGANQTIDQPGLFGSYVRWSLDLPLPE 132 (432)
T ss_pred CCCEEEEECCcchHhhhhHHHHHhc-ccCCc------EEEEeCCCCHHHh--CCCCCcccchhhHHhhccceeeeCCCCC
Confidence 4457778877888743333444443 34899 9988743221100 0000000112233333333334442 12
Q ss_pred C---HHHHHHHHHHHHHHhhcCC-CcEEEEE
Q psy8742 520 D---PEAVIHVCNLAAEWRNTFH-KDVVIDI 546 (968)
Q Consensus 520 D---~eAV~~a~~~Ave~rr~~~-gPvlIel 546 (968)
+ +..+...+++|+..+..++ |||+|++
T Consensus 133 ~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~i 163 (432)
T TIGR00173 133 ADEPLAYLRSTVDRAVAQAQGPPPGPVHINV 163 (432)
T ss_pred ccccHHHHHHHHHHHHHHhhCCCCCCEEEeC
Confidence 1 2236677788887777765 8999998
No 242
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=40.33 E-value=81 Score=36.84 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=72.7
Q ss_pred cchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhcccc-ccccCcEEEcCc-cC--CCC--CcccCCC
Q psy8742 760 LSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKW-VRQSGLVMLLPH-GL--EGM--GPEHSSA 833 (968)
Q Consensus 760 LsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw-~~~~~lv~~lP~-G~--~g~--GpeHSs~ 833 (968)
=||.+-++..+|+++.|-|..+ ---=.-|+..+ -. -.++ +...|+||.... +. .|. -++||.-
T Consensus 54 EsE~~a~s~v~GA~~aGar~~T--aTSg~Gl~Lm~----E~-----l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D~ 122 (365)
T COG0674 54 ESEIGAISAVIGASYAGARAFT--ATSGQGLLLMA----EA-----LGLAAGTETPLVIVVAQRPLPSTGLPIKGDQSDL 122 (365)
T ss_pred ccHHHHHHHHHHHHhhCcceEe--ecCCccHHHHH----HH-----HHHHHhccCCeEEEEeccCcCCCcccccccHHHH
Confidence 4899999999999999999988 22222233222 11 1222 246899999875 33 333 2455554
Q ss_pred hHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHh--cCCCCcEEEEecccCcCCC
Q psy8742 834 RLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIA--LPFRKPLVLMTPKSLLRHP 907 (968)
Q Consensus 834 r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~--~~~r~Pli~~~pK~Llr~~ 907 (968)
+| +++.|+.+++-+|..++|.+-..+.+ .+++-|++++..+.+..|.
T Consensus 123 -----~~----------------------~r~~g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~ 171 (365)
T COG0674 123 -----MA----------------------ARDTGFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHE 171 (365)
T ss_pred -----HH----------------------HHccCceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCc
Confidence 11 11227777777799999997777654 4589999999888877665
No 243
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=39.55 E-value=1.1e+02 Score=35.77 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=63.1
Q ss_pred cCcch--HHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhh--hhcCCcEEEEeCCCHHHHHHHH
Q psy8742 456 CGQGV--VFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVA--RVVNAPIFHVNSDDPEAVIHVC 528 (968)
Q Consensus 456 sgQGv--v~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~A--k~~giP~~hVDGnD~eAV~~a~ 528 (968)
+|||. .+|.|-+| .+| +|.++.|....-+-.+-..- -.|+- +--|+|.+... |+..++.-+
T Consensus 78 Sg~Gl~Lm~E~l~~a~~~~~P------~Vi~~~~R~~ps~g~p~~~d----q~D~~~~r~~g~~~~~~~--s~qEa~d~t 145 (365)
T COG0674 78 SGQGLLLMAEALGLAAGTETP------LVIVVAQRPLPSTGLPIKGD----QSDLMAARDTGFPILVSA--SVQEAFDLT 145 (365)
T ss_pred CCccHHHHHHHHHHHHhccCC------eEEEEeccCcCCCccccccc----HHHHHHHHccCceEEeec--cHHHHHHHH
Confidence 77875 57888887 899 88887777655444322221 23332 22388988887 999999999
Q ss_pred HHHHHHhhcCCCcEEEEEEeecCC
Q psy8742 529 NLAAEWRNTFHKDVVIDIVSYRRN 552 (968)
Q Consensus 529 ~~Ave~rr~~~gPvlIel~tYR~~ 552 (968)
..|...+-+..-||++=...|+..
T Consensus 146 ~~Af~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 146 LLAFNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred HHHHHHHHHhcCCEEEeeccchhc
Confidence 999999999999999988888653
No 244
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=39.28 E-value=68 Score=31.11 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=29.5
Q ss_pred ccccHhHhhhhcCCcEEEE--eCCC-HHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q psy8742 498 SSSYCTDVARVVNAPIFHV--NSDD-PEAVIHVCNLAAEWRNTFHKDVVIDIVS 548 (968)
Q Consensus 498 ss~~~td~Ak~~giP~~hV--DGnD-~eAV~~a~~~Ave~rr~~~gPvlIel~t 548 (968)
+.....+.|+..|+..+|+ ++.+ ..+-+.++..+++ .-.||||+.|.+
T Consensus 45 ~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~Pvl~hC~s 95 (110)
T PF04273_consen 45 SSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKPVLAHCRS 95 (110)
T ss_dssp -HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH---TTTTSEEEE-SC
T ss_pred CHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEECCC
Confidence 3345677899999999886 5443 3445566666665 446899999965
No 245
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=38.82 E-value=2.4e+02 Score=33.33 Aligned_cols=87 Identities=10% Similarity=0.168 Sum_probs=59.1
Q ss_pred cCcchH--HHHHHhC---CCCCCCcccEEEEEEcCCcccccCCC-cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHH
Q psy8742 456 CGQGVV--FETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPR-FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCN 529 (968)
Q Consensus 456 sgQGvv--~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~-~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~ 529 (968)
+|||.. +|.|-++ .|| +|+++.|=..+-.++.. ++ +|.-..-+.+.+.+=..|+.+++.-+.
T Consensus 81 S~~Gl~lm~E~l~~aag~~lP------~V~vv~~R~~~~p~~i~~d~------~D~~~~rd~g~~~~~a~~~QEa~D~~~ 148 (394)
T PRK08367 81 ASQGLALMHEVLFIAAGMRLP------IVMAIGNRALSAPINIWNDW------QDTISQRDTGWMQFYAENNQEALDLIL 148 (394)
T ss_pred ccchHHHHhhHHHHHHHccCC------EEEEECCCCCCCCCCcCcch------HHHHhccccCeEEEeCCCHHHHHHHHH
Confidence 788875 5777777 899 88887665443211111 11 222111234445555689999999999
Q ss_pred HHHHHhh--cCCCcEEEEEEeecCCCCC
Q psy8742 530 LAAEWRN--TFHKDVVIDIVSYRRNGHN 555 (968)
Q Consensus 530 ~Ave~rr--~~~gPvlIel~tYR~~GHn 555 (968)
.|.+.+. +..-||++=..+||. +|.
T Consensus 149 ~Af~lAE~~~~~~Pviv~~Dgf~~-sH~ 175 (394)
T PRK08367 149 IAFKVAEDERVLLPAMVGFDAFIL-THT 175 (394)
T ss_pred HHHHHHHHhCcCCCEEEEechhhh-cCc
Confidence 9999999 555899999999985 564
No 246
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=35.44 E-value=2.3e+02 Score=33.66 Aligned_cols=87 Identities=14% Similarity=0.192 Sum_probs=61.2
Q ss_pred cCcchH--HHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHH
Q psy8742 456 CGQGVV--FETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNL 530 (968)
Q Consensus 456 sgQGvv--~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~ 530 (968)
+|+|.. +|.|-++ .+| +|+++.|=..+=+.+.. .+-.|.-.+-+...+.+.-.|+.+++..+..
T Consensus 87 S~~Gl~lm~E~l~~aa~~~~P------~V~~~~~R~~~~~~~i~-----~d~~D~~~~r~~g~ivl~p~s~QEa~d~~~~ 155 (407)
T PRK09622 87 SSQGLALMVEVLYQASGMRLP------IVLNLVNRALAAPLNVN-----GDHSDMYLSRDSGWISLCTCNPQEAYDFTLM 155 (407)
T ss_pred CcchHHHHhhHHHHHHHhhCC------EEEEEeccccCCCcCCC-----chHHHHHHHhcCCeEEEeCCCHHHHHHHHHH
Confidence 788865 5888777 999 99888877643111111 1122332233444666788899999999999
Q ss_pred HHHHhhcC--CCcEEEEEEeecCCCC
Q psy8742 531 AAEWRNTF--HKDVVIDIVSYRRNGH 554 (968)
Q Consensus 531 Ave~rr~~--~gPvlIel~tYR~~GH 554 (968)
|.+.+.+. +-||+|-..+|+ -+|
T Consensus 156 Af~lAE~~~~~~Pviv~~Dg~~-~sh 180 (407)
T PRK09622 156 AFKIAEDQKVRLPVIVNQDGFL-CSH 180 (407)
T ss_pred HHHHHHHhccCCCEEEEechhh-hhC
Confidence 99999988 899999888875 345
No 247
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=35.42 E-value=1.5e+02 Score=33.54 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=37.9
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhC----CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEE
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLS----DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHV 516 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA----~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hV 516 (968)
....++|+.-|.|+ ..++|--+ .|| +=++.||.||. .+.++|+.+|+|.+++
T Consensus 92 ~~~kiavl~Sg~g~------nl~al~~~~~~~~l~----~~i~~visn~~--------------~~~~~A~~~gIp~~~~ 147 (289)
T PRK13010 92 QRPKVVIMVSKFDH------CLNDLLYRWRMGELD----MDIVGIISNHP--------------DLQPLAVQHDIPFHHL 147 (289)
T ss_pred CCeEEEEEEeCCCc------cHHHHHHHHHCCCCC----cEEEEEEECCh--------------hHHHHHHHcCCCEEEe
Confidence 45578888877766 34444443 455 22777887774 2458899999999998
Q ss_pred eCCC
Q psy8742 517 NSDD 520 (968)
Q Consensus 517 DGnD 520 (968)
+-.+
T Consensus 148 ~~~~ 151 (289)
T PRK13010 148 PVTP 151 (289)
T ss_pred CCCc
Confidence 7543
No 248
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=34.77 E-value=1.6e+02 Score=33.28 Aligned_cols=57 Identities=11% Similarity=0.195 Sum_probs=37.9
Q ss_pred CCceEEEEEEeCCccccCcchHHHHHHhC----CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEE
Q psy8742 440 EGKKVMSILLHGDAAFCGQGVVFETFHLS----DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFH 515 (968)
Q Consensus 440 ~~~~~v~v~~hGDgAfsgQGvv~EaLNlA----~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~h 515 (968)
+....++|+.-|-|+ ..++|--+ .|| +=++.||.||. .+..+|+.+|+|.++
T Consensus 82 ~~~~ki~vl~Sg~g~------nl~~l~~~~~~g~l~----~~i~~visn~~--------------~~~~~A~~~gIp~~~ 137 (280)
T TIGR00655 82 DKLKRVAILVSKEDH------CLGDLLWRWYSGELD----AEIALVISNHE--------------DLRSLVERFGIPFHY 137 (280)
T ss_pred CCCcEEEEEEcCCCh------hHHHHHHHHHcCCCC----cEEEEEEEcCh--------------hHHHHHHHhCCCEEE
Confidence 345678888766655 44554444 455 23778887763 245579999999999
Q ss_pred EeCCC
Q psy8742 516 VNSDD 520 (968)
Q Consensus 516 VDGnD 520 (968)
++-.+
T Consensus 138 ~~~~~ 142 (280)
T TIGR00655 138 IPATK 142 (280)
T ss_pred cCCCC
Confidence 98643
No 249
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=31.31 E-value=61 Score=24.40 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=19.2
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHH
Q psy8742 578 LDKYANKLIEEKVVTEEQVKDVKEKY 603 (968)
Q Consensus 578 i~~y~~~Li~~Gv~t~ee~~~i~~e~ 603 (968)
+..+ +.|.++|++|++|.++.++++
T Consensus 5 L~~L-~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 5 LEKL-KELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHH-HHHHHcCCCCHHHHHHHHHHH
Confidence 4444 346789999999999888765
No 250
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=30.92 E-value=83 Score=32.19 Aligned_cols=122 Identities=15% Similarity=0.135 Sum_probs=76.0
Q ss_pred CcEeecCCcchHHHHHHhhhcccCCCCccccccchhh-hhHhhhhHHHHHHHhhhccccccccCcEEEcCc---cCCCCC
Q psy8742 752 PYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFG-DFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH---GLEGMG 827 (968)
Q Consensus 752 ~~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE~qfg-DF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~---G~~g~G 827 (968)
.+|++. ...|.+...++.||+..+-++-++ =.+.| -+.|.. .-+. ++ |....||+++... ...+++
T Consensus 39 ~i~~i~-~~~E~~A~~~A~g~ar~~g~~~v~-~~~~GpG~~n~~----~~l~---~A-~~~~~Pvl~i~g~~~~~~~~~~ 108 (172)
T PF02776_consen 39 GIRFIP-VRHEQGAAFMADGYARATGRPGVV-IVTSGPGATNAL----TGLA---NA-YADRIPVLVITGQRPSAGEGRG 108 (172)
T ss_dssp TSEEEE--SSHHHHHHHHHHHHHHHSSEEEE-EEETTHHHHTTH----HHHH---HH-HHTT-EEEEEEEESSGGGTTTT
T ss_pred ceeeec-ccCcchhHHHHHHHHHhhccceEE-EeecccchHHHH----HHHh---hc-ccceeeEEEEecccchhhhccc
Confidence 466665 578999999999999876655552 22222 244432 2221 12 2336898888643 335666
Q ss_pred cccCCChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHh---cCCCCcEEEEecccCc
Q psy8742 828 PEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIA---LPFRKPLVLMTPKSLL 904 (968)
Q Consensus 828 peHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~---~~~r~Pli~~~pK~Ll 904 (968)
..|......++++-+ .-....+++|.+.-..|+++++ ..-+.|+.+--|+-++
T Consensus 109 ~~q~~~d~~~~~~~~------------------------~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv~ 164 (172)
T PF02776_consen 109 AFQQEIDQQSLFRPV------------------------TKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDVQ 164 (172)
T ss_dssp STTSSTHHHHHHGGG------------------------SSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHHH
T ss_pred ccccchhhcchhccc------------------------cchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhHh
Confidence 666333355666211 2346667899999999998876 3456999999998887
Q ss_pred CCC
Q psy8742 905 RHP 907 (968)
Q Consensus 905 r~~ 907 (968)
..+
T Consensus 165 ~~~ 167 (172)
T PF02776_consen 165 EAE 167 (172)
T ss_dssp TSE
T ss_pred hCc
Confidence 643
No 251
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=30.77 E-value=1.3e+02 Score=40.23 Aligned_cols=112 Identities=11% Similarity=0.080 Sum_probs=64.4
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHh--CCCCCCCcccEEEEEEcCC-ccccc-
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHL--SDLPDYTTHGTIHIVVNNQ-IGFTT- 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNl--A~LP~y~~gGvIfVVeNNq-ig~TT- 491 (968)
.+.|+-....+|.+.+.+. .-++.+.|||.|.--|.-. -.|. ++.+ +.++|-.|. .++|-
T Consensus 495 ~~MGgeg~~~~G~a~f~~~---------~hv~aniGDgTffHSG~~a-lr~AV~~~~n------it~kIL~N~avAMTGg 558 (1186)
T PRK13029 495 SQMGGEGVAWIGQMPFSRR---------RHVFQNLGDGTYFHSGLLA-IRQAIAAGVN------ITYKILYNDAVAMTGG 558 (1186)
T ss_pred eccCcchhhheeecccCCC---------CCEEEEeccccchhcCHHH-HHHHHhcCCC------EEEEEEeCcchhccCC
Confidence 3456666666676655221 1289999999985444432 2222 1666 677766666 47776
Q ss_pred CCCcc-cccccHhHhhhhcCCcEEEEeCCCHHHH-----------------HHHHHHHHHHhhcCCCcEEEEE
Q psy8742 492 DPRFS-RSSSYCTDVARVVNAPIFHVNSDDPEAV-----------------IHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 492 ~~~~~-rss~~~td~Ak~~giP~~hVDGnD~eAV-----------------~~a~~~Ave~rr~~~gPvlIel 546 (968)
.+..+ -+...++...++.|+.-+.|=-+||+.. ..++++++ |+..|+.+|-.
T Consensus 559 Qp~~G~~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~l---r~~~GvsViI~ 628 (1186)
T PRK13029 559 QPVDGVLTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQREL---REVPGVSVLIY 628 (1186)
T ss_pred CCCCCcCCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 23333 2223334466889997776644556433 44555554 25677877753
No 252
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=27.76 E-value=1.2e+02 Score=42.49 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=59.5
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+ .++..|+++..|=|+.-.-.-+.||. .+..| +|+|+-+-....-- .......+..
T Consensus 354 mAdGyAR~--------TgkpgV~i~TsGPG~tN~l~av~eA~-~d~vP------lLvItgd~p~~~~~--~ga~Q~iDq~ 416 (1655)
T PLN02980 354 HALGYARG--------SLKPAVVITSSGTAVSNLLPAVVEAS-QDFVP------LLLLTADRPPELQD--AGANQAINQV 416 (1655)
T ss_pred HHHHHHHH--------hCCCEEEEEeCcHHHHHHHHHHHHHh-hcCCC------EEEEeCCCCHHHhc--CCCCcccchh
Confidence 56666665 35568888888888832233334443 34899 99998664321100 0000111222
Q ss_pred HhhhhcCCcEEEEeCCCHHH------HHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEA------VIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eA------V~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
.+.+.+---.+.| .+|+. +..+++.|+..++.++ |||.|++=
T Consensus 417 ~lf~pvtK~s~~v--~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 417 NHFGSFVRFFFNL--PPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred hHHHhhhheeecC--CCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 3334333334444 34444 4577888888888885 89999995
No 253
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=26.76 E-value=2.1e+02 Score=28.38 Aligned_cols=112 Identities=17% Similarity=0.326 Sum_probs=64.3
Q ss_pred CcEeecCCcchHHHHHHhhhcccCCCC-ccccccchhh-hhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cCCCCC-
Q psy8742 752 PYTVCNSSLSEFGVLGFELGFSMTNPN-TLVCWEAQFG-DFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GLEGMG- 827 (968)
Q Consensus 752 ~~~v~nspLsE~avlG~~~G~s~~g~~-~l~iWE~qfg-DF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~~g~G- 827 (968)
.++++.+. +|....+++.||+..+-+ .++ =.+.| -|.|. +.-+.+. |..+.||+++... +..+.+
T Consensus 34 ~~~~i~~~-~E~~A~~~A~g~~~~~~~~~v~--~~~~gpG~~n~----~~~l~~A----~~~~~Pll~i~~~~~~~~~~~ 102 (155)
T cd07035 34 GIRYILVR-HEQGAVGMADGYARATGKPGVV--LVTSGPGLTNA----VTGLANA----YLDSIPLLVITGQRPTAGEGR 102 (155)
T ss_pred CCEEEEeC-CHHHHHHHHHHHHHHHCCCEEE--EEcCCCcHHHH----HHHHHHH----HhhCCCEEEEeCCCccccccC
Confidence 46666554 999999999999998654 455 33422 23332 2333322 2226899999754 222222
Q ss_pred -cccCCChHHHHh-cccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCC---CCcEEEEec
Q psy8742 828 -PEHSSARLERFL-QMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPF---RKPLVLMTP 900 (968)
Q Consensus 828 -peHSs~r~er~l-ql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~---r~Pli~~~p 900 (968)
..+.-. ..+++ +.| .+ ...+++|++....++++++.-. +.|+.+.-|
T Consensus 103 ~~~q~~d-~~~~~~~~~------------------------~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 103 GAFQEID-QVALFRPIT------------------------KW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred CcccccC-HHHHHHHHh------------------------ce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 211111 11122 111 22 4556799999999999987533 579988765
No 254
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=25.23 E-value=2.2e+02 Score=30.68 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=35.1
Q ss_pred EEEEEeCCccccCcchHHHHHHhC----CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 445 MSILLHGDAAFCGQGVVFETFHLS----DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 445 v~v~~hGDgAfsgQGvv~EaLNlA----~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
++|++-|. |...+++--+ +|+ +=+++||.||.- ....++|+.+|+|++..+-.+
T Consensus 2 i~vl~Sg~------Gsn~~al~~~~~~~~l~----~~i~~visn~~~------------~~~~~~A~~~gIp~~~~~~~~ 59 (207)
T PLN02331 2 LAVFVSGG------GSNFRAIHDACLDGRVN----GDVVVVVTNKPG------------CGGAEYARENGIPVLVYPKTK 59 (207)
T ss_pred EEEEEeCC------ChhHHHHHHHHHcCCCC----eEEEEEEEeCCC------------ChHHHHHHHhCCCEEEecccc
Confidence 45565554 4456666444 455 238888888851 234678999999999876543
No 255
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=24.67 E-value=2.7e+02 Score=35.20 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=71.0
Q ss_pred CCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEE
Q psy8742 403 TNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTI 479 (968)
Q Consensus 403 ~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvI 479 (968)
+++.+.+||.- ++-+++...+|..- +. ++++ ..-+.|+ + -.++.+.++ ++| ++
T Consensus 395 p~rfi~~GIaE-------q~mv~~AaGlA~~g------G~--~p~~-~tf~~F~-~-r~~~~ir~~a~~~lp------V~ 450 (653)
T TIGR00232 395 LGNYIHYGVRE-------FAMGAIMNGIALHG------GF--KPYG-GTFLMFV-D-YARPAIRLAALMKLP------VI 450 (653)
T ss_pred CCCeEeecccH-------HHHHHHHHHHHHcC------CC--eEEE-EEhHHHH-H-HHHHHHHHHHhcCCC------EE
Confidence 56678888873 33334433333311 11 2222 2223664 3 556777665 899 99
Q ss_pred EEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy8742 480 HIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHV-NSDDPEAVIHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 480 fVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hV-DGnD~eAV~~a~~~Ave~rr~~~gPvlIel 546 (968)
+|...-.++.... +-+-..+.|+|-.-.+|.+.| -=-|+.++..+.+.|++ .-.+|++|-+
T Consensus 451 ~v~th~g~~~G~d---G~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~---~~~gP~~irl 512 (653)
T TIGR00232 451 YVYTHDSIGVGED---GPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALE---SQDGPTALIL 512 (653)
T ss_pred EEEeCCccCCCCC---CcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh---cCCCcEEEEE
Confidence 9998877764432 222235788888888888776 56788888888888884 3468998844
No 256
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=24.18 E-value=1.5e+02 Score=25.90 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=25.5
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q psy8742 579 DKYANKLIEEKVVTEEQVKDVKEKYDKICEEA 610 (968)
Q Consensus 579 ~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a 610 (968)
...-++.++.|.+|.++.+.|.+.+....+..
T Consensus 21 K~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 21 KQIIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34556678999999999999999887776644
No 257
>PTZ00089 transketolase; Provisional
Probab=23.30 E-value=3e+02 Score=34.75 Aligned_cols=113 Identities=16% Similarity=0.221 Sum_probs=75.3
Q ss_pred CcceeeeeecCCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEE
Q psy8742 404 NKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIH 480 (968)
Q Consensus 404 g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIf 480 (968)
++.+.+||.- .....+|.|+|.. .+.+.++.+| +.|. | -.++.+.++ +|| ++|
T Consensus 403 ~rfi~~GIaE-----q~mv~~AaGlA~~--------~G~~P~~~tf---~~Fl-~-Ra~dqir~~al~~lp------V~~ 458 (661)
T PTZ00089 403 GRYIRFGVRE-----HAMCAIMNGIAAH--------GGFIPFGATF---LNFY-G-YALGAVRLAALSHHP------VIY 458 (661)
T ss_pred CCeeeeeecH-----HHHHHHHHHHHHc--------CCCeEEEEeh---HHHH-H-HHHHHHHHHHhcCCC------eEE
Confidence 5778899973 2233455555541 1222333222 3664 5 677777776 999 999
Q ss_pred EEEcCCcccccCCCcccccccHhHhhhhcCCcEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy8742 481 IVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHV-NSDDPEAVIHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 481 VVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hV-DGnD~eAV~~a~~~Ave~rr~~~gPvlIel 546 (968)
|+....++... ++-+-.-+.|+|-+-.+|.+.| -=-|..++..+.+.|++ .-.+|+.|-+
T Consensus 459 v~thdg~~~g~---DG~THq~iedia~lR~iPn~~V~~PaD~~E~~~~l~~al~---~~~gP~~irl 519 (661)
T PTZ00089 459 VATHDSIGLGE---DGPTHQPVETLALLRATPNLLVIRPADGTETSGAYALALA---NAKTPTILCL 519 (661)
T ss_pred EEeCCceecCC---CCCCcccHHHHHHHhcCCCcEEEecCCHHHHHHHHHHHHH---cCCCCEEEEe
Confidence 99888887543 3333345789999888998877 55788888888888874 3458999865
No 258
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=22.84 E-value=2.8e+02 Score=28.64 Aligned_cols=117 Identities=16% Similarity=0.140 Sum_probs=67.8
Q ss_pred cceeeeeecCCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHH--hC--CCCCCCcccEEE
Q psy8742 405 KNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFH--LS--DLPDYTTHGTIH 480 (968)
Q Consensus 405 ~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLN--lA--~LP~y~~gGvIf 480 (968)
+.+.++|.- .....+|.|+|++-+ ...+++..+++=...+|-..+|.+. ++ ++| +.
T Consensus 49 r~i~~gIaE-----~~~vg~a~GlA~~G~--------~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~------v~- 108 (178)
T PF02779_consen 49 RFINTGIAE-----QNMVGMAAGLALAGG--------LRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLP------VP- 108 (178)
T ss_dssp TEEE--S-H-----HHHHHHHHHHHHHSS--------SEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-------EE-
T ss_pred eEEecCcch-----hhccceeeeeeeccc--------ccceeEeeccccccccchhhhhhhhhhhhcccce------ec-
Confidence 345666653 123355556665421 2456667776655433556666665 22 899 88
Q ss_pred EEEcCCcccccCCCcccccccHhHhhhhcCCcEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy8742 481 IVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHV-NSDDPEAVIHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 481 VVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hV-DGnD~eAV~~a~~~Ave~rr~~~gPvlIel 546 (968)
|+..=.++.... .-+-....|.+-.-.+|.+.| .=-|+.++..+++.|++. +.++|++|-.
T Consensus 109 v~~~~g~~~~~~---G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 109 VGTRAGLGYGGD---GGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp EEEEESGGGSTT---GTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred ceeecCcccccc---cccccccccccccccccccccccCCCHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 776655544432 111122466777777887776 678999999999999852 3678998854
No 259
>PHA00456 hypothetical protein
Probab=22.83 E-value=61 Score=25.27 Aligned_cols=14 Identities=36% Similarity=0.892 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHhc
Q psy8742 51 ASANYVEEMYRSWQE 65 (968)
Q Consensus 51 ~Na~YIEelY~~yl~ 65 (968)
.|..|+| ||+.|+.
T Consensus 18 ~~~~Y~e-ly~lWk~ 31 (34)
T PHA00456 18 ANDAYQE-LYNLWKR 31 (34)
T ss_pred ccHHHHH-HHHHHHH
Confidence 4688998 9999975
No 260
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=20.65 E-value=2.9e+02 Score=33.68 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=23.5
Q ss_pred EEEecCCHhHHHHHHHHHHhcCCCCcEEEE
Q psy8742 869 IIANCTTPANLFHILRRQIALPFRKPLVLM 898 (968)
Q Consensus 869 ~V~~pstpa~~~hlLr~q~~~~~r~Pli~~ 898 (968)
+-+..+|+++....|++++..+ +|.||=
T Consensus 496 ~~~~v~~~~el~~al~~a~~~~--~p~lie 523 (539)
T TIGR03393 496 ECWRVSEAEQLADVLEKVAAHE--RLSLIE 523 (539)
T ss_pred ceEEeccHHHHHHHHHHHhccC--CeEEEE
Confidence 4677799999999999998776 888763
Done!