Query psy8742
Match_columns 968
No_of_seqs 420 out of 3044
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 18:03:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jgd_A 2-oxoglutarate dehydrog 100.0 3E-177 1E-181 1620.7 62.1 828 44-968 11-842 (933)
2 2yic_A 2-oxoglutarate decarbox 100.0 1E-173 5E-178 1580.8 57.7 754 154-968 6-778 (868)
3 2xt6_A 2-oxoglutarate decarbox 100.0 5E-173 2E-177 1609.4 61.5 755 153-968 250-1023(1113)
4 1qs0_A 2-oxoisovalerate dehydr 100.0 6.7E-60 2.3E-64 537.7 31.4 330 259-630 48-393 (407)
5 2bfd_A 2-oxoisovalerate dehydr 100.0 1.4E-59 4.7E-64 534.6 28.2 358 260-670 29-394 (400)
6 2ozl_A PDHE1-A type I, pyruvat 100.0 1.9E-58 6.4E-63 519.3 31.6 308 286-631 29-345 (365)
7 1w85_A Pyruvate dehydrogenase 100.0 1.9E-57 6.5E-62 512.0 28.7 321 261-631 19-349 (368)
8 1umd_A E1-alpha, 2-OXO acid de 100.0 2.6E-54 9E-59 486.6 34.3 330 261-631 12-350 (367)
9 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 1.2E-37 4.1E-42 372.7 28.9 452 286-956 21-521 (621)
10 3mos_A Transketolase, TK; thia 100.0 1.1E-35 3.8E-40 354.9 25.1 395 414-959 119-519 (616)
11 1gpu_A Transketolase; transfer 100.0 2.3E-33 8E-38 338.4 35.6 423 413-959 113-575 (680)
12 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 1.9E-34 6.6E-39 345.4 25.9 353 415-960 122-527 (629)
13 2e6k_A Transketolase; structur 100.0 6.5E-35 2.2E-39 350.5 19.8 411 412-959 114-562 (651)
14 3rim_A Transketolase, TK; TPP, 100.0 1.6E-33 5.4E-38 339.1 24.2 427 414-959 131-605 (700)
15 1r9j_A Transketolase; domains, 100.0 4.6E-33 1.6E-37 335.4 27.3 415 414-960 114-568 (673)
16 1itz_A Transketolase; calvin c 100.0 1.9E-31 6.5E-36 321.6 37.7 420 414-959 125-583 (675)
17 2r8o_A Transketolase 1, TK 1; 100.0 1.2E-32 4E-37 331.9 24.7 425 413-959 111-570 (669)
18 3kom_A Transketolase; rossmann 100.0 1.4E-32 4.8E-37 330.1 22.9 425 414-959 114-570 (663)
19 3m49_A Transketolase; alpha-be 100.0 1.2E-31 4E-36 322.9 26.2 422 414-959 138-597 (690)
20 3l84_A Transketolase; TKT, str 100.0 6.8E-31 2.3E-35 313.8 31.9 413 413-959 111-546 (632)
21 3uk1_A Transketolase; structur 100.0 1.5E-31 5.2E-36 322.7 23.6 426 415-959 154-618 (711)
22 2ozl_B PDHE1-B, pyruvate dehyd 100.0 3.1E-29 1.1E-33 280.0 10.6 214 690-959 16-237 (341)
23 1qs0_B 2-oxoisovalerate dehydr 99.9 8.6E-28 2.9E-32 267.8 12.7 225 690-962 4-243 (338)
24 1ik6_A Pyruvate dehydrogenase; 99.9 1.2E-27 4E-32 269.9 12.4 215 690-961 50-272 (369)
25 2bfd_B 2-oxoisovalerate dehydr 99.9 2.8E-27 9.5E-32 264.3 13.4 215 689-960 19-241 (342)
26 1umd_B E1-beta, 2-OXO acid deh 99.9 1.1E-26 3.9E-31 257.3 13.2 214 690-959 3-223 (324)
27 2qtc_A Pyruvate dehydrogenase 99.9 4.5E-24 1.5E-28 262.5 34.6 434 414-959 190-744 (886)
28 1w85_B Pyruvate dehydrogenase 99.9 6.5E-25 2.2E-29 243.3 16.2 203 700-959 12-222 (324)
29 4feg_A Pyruvate oxidase; carba 99.6 2E-15 6.8E-20 180.1 7.2 158 416-596 420-597 (603)
30 3ahc_A Phosphoketolase, xylulo 99.5 4.7E-13 1.6E-17 163.0 16.6 399 414-902 173-626 (845)
31 1v5e_A Pyruvate oxidase; oxido 98.9 1.8E-09 6E-14 128.6 6.9 115 416-551 413-540 (590)
32 2pan_A Glyoxylate carboligase; 98.8 2.3E-09 7.7E-14 128.2 6.0 117 416-552 442-582 (616)
33 1q6z_A BFD, BFDC, benzoylforma 98.8 1.3E-09 4.3E-14 127.9 2.5 111 416-550 401-525 (528)
34 2vk8_A Pyruvate decarboxylase 98.7 2.9E-09 9.8E-14 125.9 2.4 116 416-550 413-542 (563)
35 1ozh_A ALS, acetolactate synth 98.7 6.9E-09 2.4E-13 122.9 4.6 112 416-551 420-544 (566)
36 2iht_A Carboxyethylarginine sy 98.7 7.5E-09 2.6E-13 122.7 4.4 111 416-550 436-561 (573)
37 1t9b_A Acetolactate synthase, 98.6 2.1E-08 7.3E-13 121.3 7.2 112 416-551 513-638 (677)
38 1ovm_A Indole-3-pyruvate decar 98.6 1.5E-08 5.1E-13 119.4 5.1 112 416-550 408-532 (552)
39 2uz1_A Benzaldehyde lyase; thi 98.6 2.3E-08 7.7E-13 118.3 6.5 113 416-550 419-546 (563)
40 2nxw_A Phenyl-3-pyruvate decar 98.6 1.7E-08 5.9E-13 119.4 5.0 111 416-550 422-542 (565)
41 2vbi_A Pyruvate decarboxylase; 98.6 1.7E-08 5.8E-13 119.4 4.4 112 416-550 409-533 (566)
42 2pgn_A Cyclohexane-1,2-dione h 98.6 8.8E-09 3E-13 122.6 1.3 113 416-552 424-549 (589)
43 2vbf_A Branched-chain alpha-ke 98.6 3E-08 1E-12 117.4 5.6 112 416-550 425-551 (570)
44 1ybh_A Acetolactate synthase, 98.6 3.6E-08 1.2E-12 117.3 5.8 113 416-552 426-560 (590)
45 2wvg_A PDC, pyruvate decarboxy 98.5 3.5E-08 1.2E-12 116.7 5.1 112 416-550 413-541 (568)
46 3eya_A Pyruvate dehydrogenase 98.5 8.8E-08 3E-12 113.0 6.8 112 416-551 406-530 (549)
47 3hww_A 2-succinyl-5-enolpyruvy 98.5 6.7E-08 2.3E-12 114.2 5.2 106 419-550 420-539 (556)
48 2q28_A Oxalyl-COA decarboxylas 98.5 1.6E-07 5.3E-12 111.1 8.0 112 417-552 422-546 (564)
49 1yd7_A 2-keto acid:ferredoxin 98.5 8.7E-08 3E-12 109.0 5.3 121 753-906 65-192 (395)
50 2c31_A Oxalyl-COA decarboxylas 98.4 2E-07 6.9E-12 110.3 7.7 109 418-551 428-548 (568)
51 2x7j_A 2-succinyl-5-enolpyruvy 98.4 5.2E-08 1.8E-12 116.2 2.1 108 418-550 457-580 (604)
52 3lq1_A 2-succinyl-5-enolpyruvy 98.3 3.4E-07 1.2E-11 108.7 5.4 104 421-550 441-560 (578)
53 2c42_A Pyruvate-ferredoxin oxi 97.8 2.2E-05 7.5E-10 100.6 8.3 124 745-906 46-177 (1231)
54 2c42_A Pyruvate-ferredoxin oxi 96.6 0.005 1.7E-07 79.1 10.3 95 444-550 954-1070(1231)
55 2iht_A Carboxyethylarginine sy 70.1 7 0.00024 45.9 7.6 106 424-547 63-169 (573)
56 2pgn_A Cyclohexane-1,2-dione h 70.0 12 0.00043 44.0 9.7 104 424-547 58-163 (589)
57 1ybh_A Acetolactate synthase, 69.7 8.3 0.00028 45.5 8.1 105 424-547 65-170 (590)
58 2uz1_A Benzaldehyde lyase; thi 69.4 9.6 0.00033 44.6 8.5 106 424-547 56-162 (563)
59 1ozh_A ALS, acetolactate synth 67.9 8.5 0.00029 45.2 7.7 105 424-547 63-168 (566)
60 1t9b_A Acetolactate synthase, 64.8 12 0.0004 45.3 8.1 105 424-547 135-240 (677)
61 3eya_A Pyruvate dehydrogenase 63.8 12 0.00043 43.6 8.0 104 424-546 56-159 (549)
62 2wvg_A PDC, pyruvate decarboxy 63.5 16 0.00056 42.7 8.9 106 424-547 56-167 (568)
63 2pan_A Glyoxylate carboligase; 60.4 24 0.00083 41.7 9.7 106 424-547 80-186 (616)
64 2vbi_A Pyruvate decarboxylase; 59.8 16 0.00053 42.8 7.8 106 424-547 56-167 (566)
65 2q28_A Oxalyl-COA decarboxylas 58.0 9.9 0.00034 44.5 5.7 106 424-546 60-166 (564)
66 2x7j_A 2-succinyl-5-enolpyruvy 57.1 13 0.00043 44.1 6.5 107 424-547 84-196 (604)
67 1v5e_A Pyruvate oxidase; oxido 56.4 15 0.0005 43.5 6.8 108 424-552 58-166 (590)
68 2nxw_A Phenyl-3-pyruvate decar 53.7 22 0.00074 41.7 7.7 107 424-547 74-184 (565)
69 2c31_A Oxalyl-COA decarboxylas 53.4 13 0.00043 43.6 5.6 106 424-546 62-168 (568)
70 4feg_A Pyruvate oxidase; carba 52.4 18 0.00063 42.7 6.8 103 424-546 65-168 (603)
71 1yd7_A 2-keto acid:ferredoxin 47.5 31 0.0011 38.7 7.4 42 513-556 152-193 (395)
72 3lq1_A 2-succinyl-5-enolpyruvy 47.0 38 0.0013 39.7 8.3 107 424-547 64-176 (578)
73 1q6z_A BFD, BFDC, benzoylforma 41.7 29 0.001 40.1 6.2 106 424-547 53-159 (528)
74 2zzd_B Thiocyanate hydrolase s 41.2 37 0.0013 33.7 5.8 32 578-609 113-144 (157)
75 4hhu_A OR280; engineered prote 32.5 48 0.0016 31.3 4.7 40 509-553 82-121 (170)
76 2vk8_A Pyruvate decarboxylase 32.1 51 0.0017 38.4 6.2 106 424-547 57-168 (563)
77 4hhu_A OR280; engineered prote 30.9 55 0.0019 30.9 4.9 34 510-543 2-35 (170)
78 2kl8_A OR15; structural genomi 29.9 56 0.0019 27.7 4.3 35 514-553 5-39 (85)
79 2vbf_A Branched-chain alpha-ke 29.8 70 0.0024 37.3 6.9 105 424-547 78-188 (570)
80 1ovm_A Indole-3-pyruvate decar 25.6 1E+02 0.0035 35.7 7.2 105 424-547 58-168 (552)
81 3kcq_A Phosphoribosylglycinami 22.1 2.1E+02 0.0072 29.5 7.9 81 441-549 7-91 (215)
82 1bwx_A Parathyroid hormone; pe 21.8 43 0.0015 25.7 1.9 18 265-282 13-30 (39)
83 3hww_A 2-succinyl-5-enolpyruvy 21.2 1.9E+02 0.0065 33.6 8.3 105 424-547 61-169 (556)
No 1
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=3.3e-177 Score=1620.74 Aligned_cols=828 Identities=42% Similarity=0.709 Sum_probs=658.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcchHhHHHHHhccCC-CCCCCCCCCCCChhHHHHhhhccCCCCCCCCCCCCCCCC
Q psy8742 44 AEPFLNGASANYVEEMYRSWQEDPKSVHASWDAFFRSSSA-GALPEDPKSVHASWDAFFRSSSAGALPGQAYQPPPTLAP 122 (968)
Q Consensus 44 ~~s~l~g~Na~YIEelY~~yl~DP~SVd~sW~~~F~~l~~-~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 122 (968)
++|||+|+|+.|||+||++|++||+|||+||+.||+.+.. +. + .+..|.+...+|..+.....
T Consensus 11 ~~~~~~~~~~~~~~~~y~~~~~~p~sv~~~w~~~f~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~------------- 74 (933)
T 2jgd_A 11 DSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGV-K--PDQFHSQTREYFRRLAKDAS------------- 74 (933)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccccccHHHHHHHHHHHhhCccccCHHHHHHHhcccccCC-c--ccccccchhhhhhhcccccc-------------
Confidence 4589999999999999999999999999999998887643 11 0 01122222222211100000
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCchhHHHHhHHHHHHHHHHHHHHccccccccCCCCCCccCCCCCCCcccccccCCCC
Q psy8742 123 PSGNQVPISSLAPFVGGASSHFNEPLSEKIIDDHLAVQALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQELIFHNFWPS 202 (968)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~li~ayr~~GH~~A~ldPL~~~~~~~~~~~~~~l~~~~~~~~ 202 (968)
+ ... . ........++++|++||+|||.+||+.|+||||++..+ ..+++|
T Consensus 75 ---~-------~~~--~-------~~~~~~~~~~~~~~~li~~yr~~gh~~a~~dpl~~~~~----~~~~~l-------- 123 (933)
T 2jgd_A 75 ---R-------YSS--T-------ISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQ----DKVADL-------- 123 (933)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHGGGGSCCCSSSCCCC----C---CC--------
T ss_pred ---c-------ccc--c-------cCcchhHHHHHHHHHHHHHHHHhCccccccCCCCCCCC----CCCCCC--------
Confidence 0 000 0 00001235788999999999999999999999998532 356889
Q ss_pred ChhHHHHhhhhhccCCCCcccccceeccCCcccccCCCCCCCHHHHHHHHHHHccCcccccccccCCHHHHHHHHHHhcC
Q psy8742 203 SISYAQQLQHKVADMMQKETDMEKVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLET 282 (968)
Q Consensus 203 ~~~~~~~~~~~~~~~gl~~~Dl~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~Ycg~ig~E~~hi~~~e~r~Wl~~~~E~ 282 (968)
++++| ||+++|||+.|.++. +.. +...+||+||+++|+++|||+||+|||||.|+++|.||+++||+
T Consensus 124 ~~~~~----------g~~~~d~~~~~~~~~--~~~-~~~~~~l~~~~~~l~~~yc~~ig~e~~~i~~~~~~~w~~~~~e~ 190 (933)
T 2jgd_A 124 DPSFH----------DLTEADFQETFNVGS--FAS-GKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIES 190 (933)
T ss_dssp SSGGG----------GCCC-CTTSEEECTT--CC----CEEEHHHHHHHHHHHHHSSEEEECSSCCCHHHHHHHHHHHCC
T ss_pred CHhHc----------CCchhhccceeccCc--ccc-CcCcCcHHHHHHHHHHhccCCCcceeeecCCHHHhHHHHHHhhc
Confidence 99999 999999999998753 321 34568999999999999999999999999999999999999997
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHHH
Q psy8742 283 PGIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLAN 362 (968)
Q Consensus 283 ~~~~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La~ 362 (968)
. .+.+++|+++++|++|+++|.||+++.++|+++||||++|+|++++|+.++++.|.++|++|+++||+||||+|+|+|
T Consensus 191 ~-~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~~~a~~~g~~D~v~g~~hRg~~~~Lan 269 (933)
T 2jgd_A 191 G-RATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVN 269 (933)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHH
T ss_pred c-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHHHHHhhCCCCCEEecCCCcCHHHHHHH
Confidence 6 678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCCCC
Q psy8742 363 VCRKPLEQIFTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEG 441 (968)
Q Consensus 363 g~gkp~~~ifae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~~ 441 (968)
++|+|+.+||+|| |+.++.+ |.|||+||+|++..++. .|+.+++++++||||||+++|+|+|+|+|.|++.++.++
T Consensus 270 ~~G~~~~~i~~e~~G~~~g~~-g~gdv~~Hlg~~~~~~~--~gg~~~l~l~~~~shlg~~~p~A~G~A~A~~~~~~~~~~ 346 (933)
T 2jgd_A 270 VLGKKPQDLFDEFAGKHKEHL-GTGDVKYHMGFSSDFQT--DGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSS 346 (933)
T ss_dssp TTCCCHHHHHHHHHTCC--CC-SCCCCGGGCCEEEEEEE--TTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSCCG
T ss_pred HhCCCHHHHHHHhcCCCCCCC-CCCCccccCCccccccc--CCCceEEeecccCcccccccCHHHHHHHHHHhhccccCC
Confidence 9999999999999 7765554 67899999999887653 577899999999999999999999999999985433345
Q ss_pred ceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCccccc-CCCcccccccHhHhhhhcCCcEEEEeCCC
Q psy8742 442 KKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTT-DPRFSRSSSYCTDVARVVNAPIFHVNSDD 520 (968)
Q Consensus 442 ~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT-~~~~~rss~~~td~Ak~~giP~~hVDGnD 520 (968)
.+.++||+||||||++||+||||||+|.+.+|.|||+||||+|||||||| ++.+++++.|++++|++||+|++||||||
T Consensus 347 ~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~~~~~~~a~a~g~p~~~VdG~D 426 (933)
T 2jgd_A 347 NKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADD 426 (933)
T ss_dssp GGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------CGGGGGGTTTCCEEEEETTC
T ss_pred CCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccchhHHHHHHHcCCCEEEECCCC
Confidence 78999999999997699999999999999999999999999999999999 99989999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHH
Q psy8742 521 PEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVK 600 (968)
Q Consensus 521 ~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~ 600 (968)
++||++|+++|++|+|++++|+|||++|||++|||++|+|.||+|+||+.|++++||+.+|+++|+++|++|++++++++
T Consensus 427 ~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~ 506 (933)
T 2jgd_A 427 PEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMV 506 (933)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchhhCCHHHHHHHHccCCHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHH
Q psy8742 601 EKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILK 680 (968)
Q Consensus 601 ~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~ 680 (968)
++++++|+++++.|++.. |.+.++ ..|.++..... .....||++.+.|+.+++++..+| ++|.+|++|.++++
T Consensus 507 ~~~~~~v~~a~~~A~~~~-p~~~~~--~~~~~~~~~~~-~~~~~tg~~~~~l~~i~~~~~~~p---~~~~~~~~v~~~~~ 579 (933)
T 2jgd_A 507 NLYRDALDAGDCVVAEWR-PMNMHS--FTWSPYLNHEW-DEEYPNKVEMKRLQELAKRISTVP---EAVEMQSRVAKIYG 579 (933)
T ss_dssp HHHHHHHHHTSCCCTTEE-CCCGGG--CTTGGGSSCCT-TCCCCCCCCHHHHHHHHHHTTCCC---TTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-CCCcch--hhccccccccc-ccCCCCCCCHHHHHHHHhhhcCCC---CCCcccHHHHHHHH
Confidence 999999999999987742 222222 35766543211 123579999999999999999999 99999999999999
Q ss_pred HHHHhhhhh-chhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCC
Q psy8742 681 ARLQMVESR-TVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSS 759 (968)
Q Consensus 681 ~r~~~~~~~-~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nsp 759 (968)
.|.+|++++ .+||+++|++||++|+.+|.+||++||||++|||||||||||||+|+ ++|.+|++|.++||++||+|||
T Consensus 580 ~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~~~g-~~~~~l~~l~~~~gp~rv~ds~ 658 (933)
T 2jgd_A 580 DRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNG-STYTPLQHIHNGQGAFRVWDSV 658 (933)
T ss_dssp HHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECSSSS-CEECGGGCSCTTCCCEEEECCC
T ss_pred HHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECCccCCcchhhhhhhcccccCC-ceeechHHHHHHcCCCeEEECC
Confidence 999998765 59999999999999999999999999999999999999999999986 5999999999999999999999
Q ss_pred cchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccCCCCCcccCCChHHHHh
Q psy8742 760 LSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGPEHSSARLERFL 839 (968)
Q Consensus 760 LsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~~g~GpeHSs~r~er~l 839 (968)
|||++++||++|||+.|+++|+|||+|||||+|+||+++|||+++++.||++++||||++||||+|+||+|||+|+|+||
T Consensus 659 IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~~~~~vv~~l~~G~~g~G~~Hss~~~E~~l 738 (933)
T 2jgd_A 659 LSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYL 738 (933)
T ss_dssp SCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSSSCTTSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHccCCCEEEEEeCCCCCCCcccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCC
Q psy8742 840 QMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEG 919 (968)
Q Consensus 840 ql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g 919 (968)
|+|+. | ||+|++||||+|||||||+|+.+++++||||++||+|||++.++|+++++.++
T Consensus 739 ~~~~~-----p----------------nm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii~~pk~l~r~~~~~~~~~~~~~~ 797 (933)
T 2jgd_A 739 QLCAE-----Q----------------NMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANG 797 (933)
T ss_dssp HTCCT-----T----------------CCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTCCBCHHHHHHC
T ss_pred HHhCC-----C----------------CeEEEecCCHHHHHHHHHHHHHhcCCCcEEEEecchhccCCCCcCCccccCCC
Confidence 99976 4 99999999999999999999877788999999999999999999988888655
Q ss_pred CceEEeccCCCccccCCCCccEEEEecchhHHHHHHHHHhcCCCCCccC
Q psy8742 920 TEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAV 968 (968)
Q Consensus 920 ~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~~~~~~~vai 968 (968)
.|+.+|++... ..+++|+|||+|+|++||+|.++|++.+.+ +|+|
T Consensus 798 -~f~~~ig~~~~--~~g~dV~~vI~~~G~v~~~l~aa~~~l~~~-~v~V 842 (933)
T 2jgd_A 798 -TFLPAIGEIDE--LDPKGVKRVVMCSGKVYYDLLEQRRKNNQH-DVAI 842 (933)
T ss_dssp -CCCSEECCCSC--CCGGGCCEEEEECTTHHHHHHHHHHHTTCC-SEEE
T ss_pred -ceeecCCcceE--eecCcceEEEEEchHHHHHHHHHHHHcccC-CeEE
Confidence 49988987642 236789999999999999999999887653 6654
No 2
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=1.5e-173 Score=1580.77 Aligned_cols=754 Identities=44% Similarity=0.729 Sum_probs=662.1
Q ss_pred hHHHHHHHHHHHHHHccccccccCCCCCCccCCCCCCCcccccccCCCCChhHHHHhhhhhccCCCCcccccceeccCCc
Q psy8742 154 DDHLAVQALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQELIFHNFWPSSISYAQQLQHKVADMMQKETDMEKVFKLPST 233 (968)
Q Consensus 154 ~~~~~v~~li~ayr~~GH~~A~ldPL~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gl~~~Dl~~~~~~~~~ 233 (968)
.++++|++||+|||.+||+.|+||||++.+.. ...+++| ++++| ||+++|||+.|.++
T Consensus 6 ~~~~~~~~li~~yr~~gh~~a~~dpl~~~~~~--~~~~~~l--------~~~~~----------g~~~~d~~~~~~~~-- 63 (868)
T 2yic_A 6 DKNARVIELIAAYRNRGHLMADIDPLRLDNTR--FRSHPDL--------DVNSH----------GLTLWDLDREFKVD-- 63 (868)
T ss_dssp -CHHHHHHHHHHHHHHGGGTSCCCTTCCCTHH--HHC-----------------------------CCSTTSSBC-----
T ss_pred HHHHHHHHHHHHHHHhCccceecCCCCCCCCC--CCCCCcc--------CHHhc----------CCChHHhCCeeccC--
Confidence 46889999999999999999999999983200 0246789 99999 99999999999875
Q ss_pred ccccCCCCCCCHHHHHHHHHHHccCcccccccccCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8742 234 TFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLETPGIMNMSEDQKRLILARLTRATGFEAFLARK 313 (968)
Q Consensus 234 ~~~~~~~~~~~l~~i~~~L~~~Ycg~ig~E~~hi~~~e~r~Wl~~~~E~~~~~~ls~e~~~~il~~M~~aR~fE~~l~~~ 313 (968)
++. +...+||+||+++|+++|||+||+|||||.|+++|.|+++++|+.. +.+++++++++|++|+++|.||+++.++
T Consensus 64 ~~~--~~~~~~l~~~~~~l~~~yc~~ig~e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~R~fE~~l~~~ 140 (868)
T 2yic_A 64 GFA--GVQRKKLRDILSVLRDAYCRHVGVEYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTK 140 (868)
T ss_dssp -------CCCBHHHHHHHHHHHHSSSEEEECTTCSCHHHHHHHHHHHSSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccc--CcCcCCHHHHHHHHHHhhcCCCCcceeccCChHHhHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343 3566899999999999999999999999999999999999999765 7899999999999999999999999999
Q ss_pred HhccCccccCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHHHhcCCCHHHHHHHh-cCCCCC-CCCCCCcccc
Q psy8742 314 WSSEKRFGLEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQF-AALEAA-DDGSGDVKYH 391 (968)
Q Consensus 314 ~~~~Krfg~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La~g~gkp~~~ifae~-g~~~~~-~~G~GdV~~H 391 (968)
|+++||||++|+|++++|+.++++.++++|++|+++||+||||+|+|+|++|+|+.+||+|| |+.++. +.|+|||+||
T Consensus 141 ~~~~k~~g~~G~Ea~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~H 220 (868)
T 2yic_A 141 YVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYH 220 (868)
T ss_dssp CSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGT
T ss_pred HhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 776665 5678899999
Q ss_pred cccccccccccCCc-ceeeeeecCCCCccccCchhhhHhhHhHhhcCCCCC-----ceEEEEEEeCCccccCcchHHHHH
Q psy8742 392 LGTYIERLNRVTNK-NIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEG-----KKVMSILLHGDAAFCGQGVVFETF 465 (968)
Q Consensus 392 lg~~~~~~~~~~g~-~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~~-----~~~v~v~~hGDgAfsgQGvv~EaL 465 (968)
+|++..++++ .|+ .+++++++||||||+++|+|+|+|+|.|++.++..+ .+.++||+||||||++||+|||||
T Consensus 221 lg~~~~~~~~-~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Eal 299 (868)
T 2yic_A 221 LGATGTYIQM-FGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETL 299 (868)
T ss_dssp CCEEEEEECS-SSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHH
T ss_pred CCcccccccc-CCCcceeeeecCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHH
Confidence 9998876542 144 789999999999999999999999999986533223 678999999999988999999999
Q ss_pred HhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy8742 466 HLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVID 545 (968)
Q Consensus 466 NlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIe 545 (968)
|||.+.+|.|||+||||+||||||||++.+++++.+++++|++||+|++||||+||+||+.|+++|++|||+++||+|||
T Consensus 300 n~A~~~~lp~g~vi~iv~NN~~g~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe 379 (868)
T 2yic_A 300 NLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVID 379 (868)
T ss_dssp TTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred HHHHhcCCCCCCeEEEEEcCCcccccCccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCcc
Q psy8742 546 IVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHI-KYKD 624 (968)
Q Consensus 546 l~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~-~~~~ 624 (968)
++|||++|||++|+|+||+|.||+.|++++||+.+|+++|+++|++|++++++++++++++|++++++|++. .| .+.+
T Consensus 380 ~~tyR~~GHs~~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~-~p~~~~~ 458 (868)
T 2yic_A 380 MLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVREL-EKHEIEP 458 (868)
T ss_dssp EECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHC----
T ss_pred EEeecCCCcCcccccccCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCccc
Confidence 999999999999999999999999999889999999999999999999999999999999999999999874 12 2222
Q ss_pred c--cCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhh
Q psy8742 625 W--LDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFG 702 (968)
Q Consensus 625 ~--~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~ 702 (968)
| +...|.. ....+|+++.+.|+.++++++.+| ++|.+|+++.+++++|.+|++++.||||++|+||||
T Consensus 459 ~~~~~~~~~~-------~~~~~t~~~~~~l~~~~~~~~~~p---~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~la~~ 528 (868)
T 2yic_A 459 SESVEADQQI-------PSKLATAVDKAMLQRIGDAHLALP---EGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALG 528 (868)
T ss_dssp --------------------CCCCCCHHHHHHHHHHTTCCC---TTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHH
T ss_pred cccccccccc-------ccCCCCccCHHHHHHHHHhhccCC---cccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 2 1122321 112469999999999999999999 999999999999999999987666999999999999
Q ss_pred hhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCC------CCCCCCcEeecCCcchHHHHHHhhhcccCC
Q psy8742 703 SLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNL------YPDQAPYTVCNSSLSEFGVLGFELGFSMTN 776 (968)
Q Consensus 703 sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l------~~~~g~~~v~nspLsE~avlG~~~G~s~~g 776 (968)
|||.+|++|||+||||+||||||||||||||+|+ ++|.||++| .++++++||+||||||++++||++|||+.|
T Consensus 529 ~l~~~~~~V~~~G~Dv~~~Tfs~rh~v~~d~~~g-~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G 607 (868)
T 2yic_A 529 SLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTG-EEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGN 607 (868)
T ss_dssp HHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTC-CEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHC
T ss_pred HHHhcCCCEEEEcCcCCccchhhcchhccccCCC-ceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999986 599999999 888999999999999999999999999999
Q ss_pred CCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccCCCCCcccCCChHHHHhcccCCCCcccccccchh
Q psy8742 777 PNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGPEHSSARLERFLQMSDDEPIRVILVLVPI 856 (968)
Q Consensus 777 ~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~ 856 (968)
+++++|||+|||||+|+|||+||||++++++||++++||||++||||+|+||+|||+|+|+|||||+. |
T Consensus 608 ~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~~G~Gp~Hs~~~~E~~l~l~~~-----p------ 676 (868)
T 2yic_A 608 PDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLQLWAE-----G------ 676 (868)
T ss_dssp TTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSSSCTTSSCCCHHHHHHHCCT-----T------
T ss_pred CCCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCCChhhcCCcHHHHHhcCCC-----C------
Confidence 99999999999999999999999999999999999999999999999999999999999999999975 5
Q ss_pred hhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCc--ccc
Q psy8742 857 EFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSI--SER 934 (968)
Q Consensus 857 ~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~--~~~ 934 (968)
||+|++||||+|||||||+|+++++|+|||||+||+|||++.++|+++++.++ .|+++|++... ...
T Consensus 677 ----------nm~V~~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~-~f~~~ig~~~~~~~l~ 745 (868)
T 2yic_A 677 ----------SMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTES-KFRSVLEEPMYTDGEG 745 (868)
T ss_dssp ----------SCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSC-CCCSEECCHHHHTSSC
T ss_pred ----------CCEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCC-CceecCCcceeecccc
Confidence 99999999999999999999999999999999999999999999999888766 59999987531 014
Q ss_pred CCCCccEEEEecchhHHHHHHHHHhcCCCCCccC
Q psy8742 935 KADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAV 968 (968)
Q Consensus 935 ~~~~v~rvilcsGkvyydl~~~r~~~~~~~~vai 968 (968)
++++|||+|||||++||+|.++|++++. .+|+|
T Consensus 746 ~g~dv~r~Ii~~G~~~~~l~aa~~~~g~-i~v~V 778 (868)
T 2yic_A 746 DRNKVTRLLLTSGKIYYELAARKAKENR-EDVAI 778 (868)
T ss_dssp CGGGCCEEEEECSTHHHHHHHHHHHHTC-TTEEE
T ss_pred cCCceeEEEEEecHHHHHHHHHHHhCCC-CCEEE
Confidence 6788999999999999999999987772 24653
No 3
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=5.1e-173 Score=1609.37 Aligned_cols=755 Identities=44% Similarity=0.727 Sum_probs=677.7
Q ss_pred HhHHHHHHHHHHHHHHccccccccCCCCCCccCCCCCCCcccccccCCCCChhHHHHhhhhhccCCCCcccccceeccCC
Q psy8742 153 IDDHLAVQALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQELIFHNFWPSSISYAQQLQHKVADMMQKETDMEKVFKLPS 232 (968)
Q Consensus 153 ~~~~~~v~~li~ayr~~GH~~A~ldPL~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gl~~~Dl~~~~~~~~ 232 (968)
..++++|++||+|||.+||+.|+||||++.+.. ...+++| ++++| ||+++|||+.|.++
T Consensus 250 ~~~~~~~~~li~~yr~~gh~~a~~dpl~~~~~~--~~~~~~l--------~~~~~----------g~~~~d~~~~~~~~- 308 (1113)
T 2xt6_A 250 EDKNARVIELIAAYRNRGHLMADIDPLRLDNTR--FRSHPDL--------DVNSH----------GLTLWDLDREFKVD- 308 (1113)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCCCCTTCCCGGG--GSCCTTT--------CSGGG----------TCCGGGTTSEEEEC-
T ss_pred HHHHHHHHHHHHHHHHhCccccccCCCCCCcCC--CCCCCCc--------CHHHc----------CCChHHhcCccccC-
Confidence 367889999999999999999999999983200 0246789 99999 99999999999875
Q ss_pred cccccCCCCCCCHHHHHHHHHHHccCcccccccccCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy8742 233 TTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLETPGIMNMSEDQKRLILARLTRATGFEAFLAR 312 (968)
Q Consensus 233 ~~~~~~~~~~~~l~~i~~~L~~~Ycg~ig~E~~hi~~~e~r~Wl~~~~E~~~~~~ls~e~~~~il~~M~~aR~fE~~l~~ 312 (968)
++. +...+||+||+++|+++|||+||+|||||.|+++|.|+++++|+.. +.+++++++++|++|+++|.||+++.+
T Consensus 309 -~~~--~~~~~~l~~~~~~l~~~yc~~ig~e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~r~fE~~l~~ 384 (1113)
T 2xt6_A 309 -GFA--GVQRKKLRDILSVLRDAYCRHVGVEYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQT 384 (1113)
T ss_dssp -STT--SSEEEEHHHHHHHHHHHHSSSEEEECTTCSCHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccc--CcccCCHHHHHHHHHHhccCCCCcceeccCCHHHhHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3556899999999999999999999999999999999999999765 789999999999999999999999999
Q ss_pred HHhccCccccCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHHHhcCCCHHHHHHHh-cCCCCC-CCCCCCccc
Q psy8742 313 KWSSEKRFGLEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQF-AALEAA-DDGSGDVKY 390 (968)
Q Consensus 313 ~~~~~Krfg~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La~g~gkp~~~ifae~-g~~~~~-~~G~GdV~~ 390 (968)
+|+++||||++|+|++++|+.++++.++++|++|+++||+||||+|+|+|++|+|+.+||+|| |+.++. +.|+|||+|
T Consensus 385 ~~~~~k~~g~~GqEa~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~ 464 (1113)
T 2xt6_A 385 KYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKY 464 (1113)
T ss_dssp HCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGG
T ss_pred HHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 776665 567889999
Q ss_pred ccccccccccccCCc-ceeeeeecCCCCccccCchhhhHhhHhHhhcCCCCC-----ceEEEEEEeCCccccCcchHHHH
Q psy8742 391 HLGTYIERLNRVTNK-NIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEG-----KKVMSILLHGDAAFCGQGVVFET 464 (968)
Q Consensus 391 Hlg~~~~~~~~~~g~-~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~~-----~~~v~v~~hGDgAfsgQGvv~Ea 464 (968)
|+|++..++++ .|+ .+++++++||||||+++|+|+|+|+|.|++.++..+ .+.+++|+||||||++||+||||
T Consensus 465 Hlg~~~~~~~~-~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ea 543 (1113)
T 2xt6_A 465 HLGATGTYIQM-FGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAET 543 (1113)
T ss_dssp TCCEEEEEECS-SSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHH
T ss_pred cCCcccccccc-CCCcceeeeecCCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHH
Confidence 99998876542 144 789999999999999999999999999986432222 67999999999998899999999
Q ss_pred HHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q psy8742 465 FHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVI 544 (968)
Q Consensus 465 LNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlI 544 (968)
||||.+.+|.|||+||||+||||||||++.+++++.|++++|++||+|++||||+|++||+.|+++|++|||+++||+||
T Consensus 544 ln~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlI 623 (1113)
T 2xt6_A 544 LNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVI 623 (1113)
T ss_dssp HTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHhhcCCCCCCeEEEEEeCCcccccCccccccccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999998888888899999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCc
Q psy8742 545 DIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHI-KYK 623 (968)
Q Consensus 545 el~tYR~~GHne~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~-~~~ 623 (968)
|++|||++|||++|+|+||+|.||+.|++++||+.+|+++|+++|++|++++++++++++++|++++++|++. .| .+.
T Consensus 624 e~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~-~~~~~~ 702 (1113)
T 2xt6_A 624 DMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVREL-EKHEIE 702 (1113)
T ss_dssp EEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHC--
T ss_pred EEEeEccCCcCCCCccccCChHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcc
Confidence 9999999999999999999999999999889999999999999999999999999999999999999999874 22 222
Q ss_pred cc--cCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhh
Q psy8742 624 DW--LDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAF 701 (968)
Q Consensus 624 ~~--~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~ 701 (968)
+| +...|+. ....+|+++.+.|+.++++++++| ++|.+|+++.+++++|.+|++++.||||++|+|||
T Consensus 703 ~~~~~~~~~~~-------~~~~~t~~~~~~l~~~~~~~~~~p---~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~ 772 (1113)
T 2xt6_A 703 PSESVEADQQI-------PSKLATAVDKAMLQRIGDAHLALP---EGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLAL 772 (1113)
T ss_dssp ---------------------CCCCCCHHHHHHHHHHTTCCC---TTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHH
T ss_pred ccccccccccc-------ccCCCCccCHHHHHHHHHhhccCC---cccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 22 1223322 112469999999999999999999 99999999999999999998766699999999999
Q ss_pred hhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCC------CCCCCCcEeecCCcchHHHHHHhhhcccC
Q psy8742 702 GSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNL------YPDQAPYTVCNSSLSEFGVLGFELGFSMT 775 (968)
Q Consensus 702 ~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l------~~~~g~~~v~nspLsE~avlG~~~G~s~~ 775 (968)
||||.+|++|||+||||+||||||||||||||+++ ++|+||++| .++||++||+||||||++++||++|||+.
T Consensus 773 ~~ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~~g-~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~ 851 (1113)
T 2xt6_A 773 GSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTG-EEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVG 851 (1113)
T ss_dssp HHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTC-CEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEcccCCCccchhcchheecccCC-ceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999986 599999999 88899999999999999999999999999
Q ss_pred CCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccCCCCCcccCCChHHHHhcccCCCCcccccccch
Q psy8742 776 NPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGPEHSSARLERFLQMSDDEPIRVILVLVP 855 (968)
Q Consensus 776 g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~ 855 (968)
|+++++|||+|||||+|+|||+||||++++++||++++||||++||||+|+||+|||+|+|+|||||+. |
T Consensus 852 G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~~G~G~~Hs~~~~E~~l~l~~~-----p----- 921 (1113)
T 2xt6_A 852 NPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLQLWAE-----G----- 921 (1113)
T ss_dssp CTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSSSCTTSSCCCHHHHHHHCCT-----T-----
T ss_pred CCCCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCCCCChhhhcccHHHHHhcCCC-----C-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999975 5
Q ss_pred hhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCc--cc
Q psy8742 856 IEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSI--SE 933 (968)
Q Consensus 856 ~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~--~~ 933 (968)
||+||+||||+|||||||+|+++++|+|||||+||+|||++.++|++++|.++ .|+++|++... ..
T Consensus 922 -----------nm~V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~-~f~~~ig~~~~~~~l 989 (1113)
T 2xt6_A 922 -----------SMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTES-KFRSVLEEPMYTDGE 989 (1113)
T ss_dssp -----------SCEEECCSSHHHHHHHHHHHHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSC-CCCSEECCHHHHTSC
T ss_pred -----------CcEEEecCCHHHHHHHHHHHHhccCCCCEEEEechHHhCCCCCCCcccccCCC-CccccCCcceeeccc
Confidence 99999999999999999999999999999999999999999999999889766 59999987531 02
Q ss_pred cCCCCccEEEEecchhHHHHHHHHHhcCCCCCccC
Q psy8742 934 RKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAV 968 (968)
Q Consensus 934 ~~~~~v~rvilcsGkvyydl~~~r~~~~~~~~vai 968 (968)
.++++|||+|||||++||+|.++|++++. .+|+|
T Consensus 990 ~~g~dv~r~iv~~G~~~~~l~aa~~~~g~-i~v~V 1023 (1113)
T 2xt6_A 990 GDRNKVTRLLLTSGKIYYELAARKAKENR-EDVAI 1023 (1113)
T ss_dssp CCSTTCCEEEEECSTHHHHHHHHHHHHTC-TTEEE
T ss_pred cCccccCEEEEEECHHHHHHHHHHHhCCC-CCEEE
Confidence 46789999999999999999999987772 24653
No 4
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=6.7e-60 Score=537.68 Aligned_cols=330 Identities=14% Similarity=0.125 Sum_probs=291.8
Q ss_pred cccccccccCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCcchhhHHHHHH
Q psy8742 259 SIGAEFMFINSLEQCNWIRQKLETPGIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFG----LEGAEILIPAMKQ 334 (968)
Q Consensus 259 ~ig~E~~hi~~~e~r~Wl~~~~E~~~~~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg----~eG~Ea~i~~l~~ 334 (968)
++++++++|.|++++ |+.. ..+.+++++++++|+.|+++|.||+++.++|++ |+++ ++|+|++++|+..
T Consensus 48 ~~~~~~~~~ld~~g~-~~~~-----~~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~q-gr~~~~~~~~GqEA~~vg~~~ 120 (407)
T 1qs0_A 48 DLSYSLVRVLDEQGD-AQGP-----WAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQ-KKMSFYMQSLGEEAIGSGQAL 120 (407)
T ss_dssp HHHTSCBCCBCTTSC-BCSG-----GGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSSCCCCCTTTHHHHHHHHH
T ss_pred ccCCCeEEEECCCCC-CCCc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CccccCcCCCChHHHHHHHHH
Confidence 457789999999887 4431 236799999999999999999999999999975 4554 6999999987654
Q ss_pred HHHHhhhcCCCcEEeccCCccHHHHHHHhcCCCHHHHHHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeec
Q psy8742 335 VIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVA 413 (968)
Q Consensus 335 li~~a~~~g~~divigm~HRgr~~~La~g~gkp~~~ifae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~ 413 (968)
+++.+|+++ |+||+|+++|++++ ++.+||++| ++..+.++|+| ++||+++... ++.+
T Consensus 121 ------al~~~D~v~-~~yR~~~~~l~~g~--~~~~i~~el~g~~~~~~~G~g-~~~h~~~~~~------------~~~~ 178 (407)
T 1qs0_A 121 ------ALNRTDMCF-PTYRQQSILMARDV--SLVEMICQLLSNERDPLKGRQ-LPIMYSVREA------------GFFT 178 (407)
T ss_dssp ------HSCTTSEEE-CCSSCHHHHHHTTC--CHHHHHHHHHTCTTCTTTTCS-CTTCCCBGGG------------TBCC
T ss_pred ------hcCCCCEEE-ecccchHHHHhcCC--CHHHHHHHHhCCCCCCCCCCC-ceeecchhcc------------Cccc
Confidence 567789888 89999999999865 999999999 77766678886 5999987432 3567
Q ss_pred CCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccc
Q psy8742 414 NPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFT 490 (968)
Q Consensus 414 NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~T 490 (968)
+++|||.++|+|+|+|+|.++ .+.+.++||++|||+ ++||+|||+||+| +|| +||||+||+|||+
T Consensus 179 ~~g~lG~~lp~AvGaA~A~k~-----~~~~~~vv~i~GDGa-~~~G~~~Eal~~A~~~~lp------vi~Vv~NN~~gi~ 246 (407)
T 1qs0_A 179 ISGNLATQFVQAVGWAMASAI-----KGDTKIASAWIGDGA-TAESDFHTALTFAHVYRAP------VILNVVNNQWAIS 246 (407)
T ss_dssp CCSSSSHHHHHHHHHHHHHHH-----TTCCCCEEEEEETGG-GGSHHHHHHHHHHHHHTCC------EEEEEEECSEETT
T ss_pred cccccccchhHHHHHHHHHHH-----hCCCCEEEEEECCch-hhcChHHHHHHHHHHHCcC------EEEEEECCCccee
Confidence 789999999999999999998 456789999999999 6999999999999 899 9999999999999
Q ss_pred cCCCccc-ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCC-CCCHHHH
Q psy8742 491 TDPRFSR-SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPM-FTQPLMY 568 (968)
Q Consensus 491 T~~~~~r-ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~-yt~p~~y 568 (968)
|+...+. ...+++++|++||+|+++|||+|+++|+.|+++|++++|+++||+|||++|||.+|||++|+|. ||+++|+
T Consensus 247 ~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~ 326 (407)
T 1qs0_A 247 TFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDW 326 (407)
T ss_dssp EEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHH
T ss_pred eccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHH
Confidence 9877655 4567889999999999999999999999999999999999999999999999999999999886 9999999
Q ss_pred HHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhc------cCCCCccccCCCC
Q psy8742 569 KIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKE------THIKYKDWLDSPW 630 (968)
Q Consensus 569 ~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~------~~~~~~~~~~~~w 630 (968)
+.|++ +||+.+|+++|+++|++|++++++|+++++++|++++++|++. |.|+++++++..|
T Consensus 327 ~~~~~-~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~~~~~p~p~~~~~~~~vy 393 (407)
T 1qs0_A 327 SHFPL-GDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVY 393 (407)
T ss_dssp HHCTT-CCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCCCCSSGGGSSSS
T ss_pred HHHhc-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHhhcc
Confidence 99986 8999999999999999999999999999999999999999984 5666666665544
No 5
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=1.4e-59 Score=534.64 Aligned_cols=358 Identities=15% Similarity=0.141 Sum_probs=289.4
Q ss_pred ccccccccCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---cccCcchhhHHHHHHHH
Q psy8742 260 IGAEFMFINSLEQCNWIRQKLETPGIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKR---FGLEGAEILIPAMKQVI 336 (968)
Q Consensus 260 ig~E~~hi~~~e~r~Wl~~~~E~~~~~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Kr---fg~eG~Ea~i~~l~~li 336 (968)
-++++.+|.|++.+ |+.. ...+.+++++++++|+.|+++|.||+++.++|+++|. ++.+|+|++++|+.
T Consensus 29 ~~~~~~~~l~~~g~-~~~~----~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~--- 100 (400)
T 2bfd_A 29 SGIPIYRVMDRQGQ-IINP----SEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSA--- 100 (400)
T ss_dssp SCSCEECSBCTTSC-BSCG----GGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHH---
T ss_pred CCCCeeEEECCCCC-CCCc----cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHHH---
Confidence 35688999999987 4432 2246799999999999999999999999999998874 46799999998754
Q ss_pred HHhhhcCCCcEEeccCCccHHHHHHHhcCCCHHHHHHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCC
Q psy8742 337 DKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANP 415 (968)
Q Consensus 337 ~~a~~~g~~divigm~HRgr~~~La~g~gkp~~~ifae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~Np 415 (968)
.+++.+|++++ +||||+.++++|+ ++.++|++| ++.++.++|+| ++||+++... .+.+++
T Consensus 101 ---~al~~~D~v~~-~yR~~~~~~~~G~--~~~~~l~e~~g~~~g~~~G~~-~~~H~~~~~~------------~~~~~~ 161 (400)
T 2bfd_A 101 ---AALDNTDLVFG-QAREAGVLMYRDY--PLELFMAQCYGNISDLGKGRQ-MPVHYGCKER------------HFVTIS 161 (400)
T ss_dssp ---HTSCTTSEEEC-CSCCHHHHHHTTC--CHHHHHHHHHTCTTCTTTTCS-CSSCCCBTTT------------TBCCCC
T ss_pred ---HhcCCCCEEEe-cCcCHHHHHHcCC--CHHHHHHHhcCCCCCCCCCCC-CCcCCccccc------------CccccC
Confidence 45778899986 9999999999855 999999999 77777777876 6999987532 245778
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~ 492 (968)
+|||.++|+|+|+|+|.++. +.+.++||++|||+ .+||+|||+||+| +|| +||||.||+|||+|+
T Consensus 162 g~lG~~lp~AvG~AlA~~~~-----~~~~~vv~~~GDGa-~~~G~~~Eal~~A~~~~lp------vi~vv~NN~~~i~~~ 229 (400)
T 2bfd_A 162 SPLATQIPQAVGAAYAAKRA-----NANRVVICYFGEGA-ASEGDAHAGFNFAATLECP------IIFFCRNNGYAISTP 229 (400)
T ss_dssp SSTTTHHHHHHHHHHHHHHH-----TCCCCEEEEEETTG-GGSHHHHHHHHHHHHTTCC------EEEEEEECSEETTEE
T ss_pred ccccccccHHHHHHHhhhhh-----CCCCeEEEEECchh-hhcChHHHHHHHHHHHCcC------EEEEEECCceeeeec
Confidence 99999999999999999983 45678999999999 5899999999999 888 999999999999999
Q ss_pred CCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCC-CCCHHHHHHH
Q psy8742 493 PRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPM-FTQPLMYKII 571 (968)
Q Consensus 493 ~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~-yt~p~~y~~i 571 (968)
...+++..+++++|++||+|+++|||+|+++|+.|+++|++++|+++||+|||++|||++|||++|+|. ||+++|++.|
T Consensus 230 ~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e~~~~ 309 (400)
T 2bfd_A 230 TSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYW 309 (400)
T ss_dssp GGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC----------------
T ss_pred ccccCCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCCCCccCCCHHHHHHH
Confidence 888888889999999999999999999999999999999999999999999999999999999999976 9999999999
Q ss_pred HhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCccCCCCCCHHH
Q psy8742 572 KKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENT 651 (968)
Q Consensus 572 ~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~ 651 (968)
++++||+.+|+++|++.|+++++++++++++++++|++++++|++.+.|++.+.+...|.. .+....++
T Consensus 310 ~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~-----------~~~~l~~q 378 (400)
T 2bfd_A 310 DKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQE-----------MPAQLRKQ 378 (400)
T ss_dssp ---CCHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSS-----------CCHHHHHH
T ss_pred HhcCCHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhhcc-----------CCHHHHHH
Confidence 9888999999999999999999999999999999999999999887766655554443321 12233455
Q ss_pred HHHHHhhhcCCCCCCchhh
Q psy8742 652 LVHIGKRFSSPPPNATEFV 670 (968)
Q Consensus 652 l~~i~~~~~~~P~~~~~f~ 670 (968)
+..+.+.+...| ++|.
T Consensus 379 ~~~~~~~~~~~~---~~~~ 394 (400)
T 2bfd_A 379 QESLARHLQTYG---EHYP 394 (400)
T ss_dssp HHHHHHHHHHHG---GGSC
T ss_pred HHHHHHHHHhCC---CcCC
Confidence 677776666666 6554
No 6
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=1.9e-58 Score=519.33 Aligned_cols=308 Identities=17% Similarity=0.242 Sum_probs=271.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHH
Q psy8742 286 MNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFG----LEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLA 361 (968)
Q Consensus 286 ~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg----~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La 361 (968)
+.+++++++++|+.|+++|.||+++..+|++||..| .+|+|++++|+.. ++..+|.++ ++||+|+.+|+
T Consensus 29 ~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~------al~~~D~i~-~~yR~~~~~~~ 101 (365)
T 2ozl_A 29 TVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEA------GINPTDHLI-TAYRAHGFTFT 101 (365)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHH------TSCTTSEEE-CCSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHH------hhCCCCEEe-hHHHHHHHHHh
Confidence 468999999999999999999999999999998755 4999999987654 466678777 48999999999
Q ss_pred HhcCCCHHHHHHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCCC
Q psy8742 362 NVCRKPLEQIFTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGE 440 (968)
Q Consensus 362 ~g~gkp~~~ifae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~ 440 (968)
+|+ |+.+||+|| |+.++.++|+|+ +||+++. ++ .++.+++|.++|+|+|+|+|.+++
T Consensus 102 ~G~--~~~~i~~e~~g~~~g~~~g~gg-~~H~~~~--~~------------~~~~g~~G~~lp~A~G~A~A~~~~----- 159 (365)
T 2ozl_A 102 RGL--SVREILAELTGRKGGCAKGKGG-SMHMYAK--NF------------YGGNGIVGAQVPLGAGIALACKYN----- 159 (365)
T ss_dssp TTC--CHHHHHHHHTTCTTSTTTTSSC-TTCCCBT--TB------------CCCCCSTTTHHHHHHHHHHHHHHH-----
T ss_pred cCC--CHHHHHHHHcCCCCCCCCCCCC-CCCcCcc--cc------------CCCcchhhhhhHHHHHHHHHHHhc-----
Confidence 865 999999999 877777777765 6999542 22 344578999999999999999983
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEEe
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVN 517 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hVD 517 (968)
+.+.++||++|||| ++||+|||+||+| +|| +||||+||||||+|+......+..... +++|+|+++||
T Consensus 160 ~~~~~vv~~~GDGa-~~~G~~~Ealn~A~~~~lp------vi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~Vd 230 (365)
T 2ozl_A 160 GKDEVCLTLYGDGA-ANQGQIFEAYNMAALWKLP------CIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVD 230 (365)
T ss_dssp TCCCCEEEEEETTG-GGCHHHHHHHHHHHHTTCC------EEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEE
T ss_pred CCCceEEEEECchh-hhccHHHHHHHHHHHHCcC------EEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEe
Confidence 56789999999999 6899999999999 888 999999999999997555443333333 78999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCC-CCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHH
Q psy8742 518 SDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPM-FTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQV 596 (968)
Q Consensus 518 GnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~-yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~ 596 (968)
|+|+++|+.|+++|++++|+++||+|||++|||++|||++|++. ||+|+||+.|++++||+.+|+++|+++|++|++++
T Consensus 231 G~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~ 310 (365)
T 2ozl_A 231 GMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEEL 310 (365)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999999999999999999999999875 99999999998778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCC
Q psy8742 597 KDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWS 631 (968)
Q Consensus 597 ~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~ 631 (968)
++++++++++|++++++|++.|.|++++++...|.
T Consensus 311 ~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 345 (365)
T 2ozl_A 311 KEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYS 345 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCGGGTTCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhcC
Confidence 99999999999999999999999988888776664
No 7
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=1.9e-57 Score=512.03 Aligned_cols=321 Identities=19% Similarity=0.209 Sum_probs=278.9
Q ss_pred cccccccCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCcchhhHHHHHHHH
Q psy8742 261 GAEFMFINSLEQCNWIRQKLETPGIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFG----LEGAEILIPAMKQVI 336 (968)
Q Consensus 261 g~E~~hi~~~e~r~Wl~~~~E~~~~~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg----~eG~Ea~i~~l~~li 336 (968)
.+++++|.|++++ |+.. ...+.+++++++++|+.|+++|.||+++.++++ +|++| .+|+|++++|+..
T Consensus 19 ~~~~~~~l~~~g~-~~~~----~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~-qgr~g~~~~~~G~Ea~~vg~~~-- 90 (368)
T 1w85_A 19 QFPTFQILNEEGE-VVNE----EAMPELSDEQLKELMRRMVYTRILDQRSISLNR-QGRLGFYAPTAGQEASQIASHF-- 90 (368)
T ss_dssp TCCEECSBCTTSC-BSCG----GGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSCCSCCCCTTCHHHHHHHHH--
T ss_pred CCCeeEEECCCCC-CCCc----cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh-CCccccCCCCCCHHHHHHHHHH--
Confidence 4589999999987 5442 223579999999999999999999999976665 45568 6999999987654
Q ss_pred HHhhhcCCCcEEeccCCccHHHHHHHhcCCCHHHHHHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCC
Q psy8742 337 DKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANP 415 (968)
Q Consensus 337 ~~a~~~g~~divigm~HRgr~~~La~g~gkp~~~ifae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~Np 415 (968)
++..+|++++| ||+|+.++++|+ ++..+|+|| |+.. |+ +||. +.++.+++
T Consensus 91 ----~l~~~D~v~~~-~R~~~~~~~~G~--~~~~~~~el~G~~~----G~---~~h~---------------~~~~~~~~ 141 (368)
T 1w85_A 91 ----ALEKEDFILPG-YRDVPQIIWHGL--PLYQAFLFSRGHFH----GN---QIPE---------------GVNVLPPQ 141 (368)
T ss_dssp ----TCCTTCEEECC-SSCHHHHHHTTC--CHHHHHHHHHTCGG----GG---CCCT---------------TCCBCCCC
T ss_pred ----hcCCcCEEEec-chhHHHHHhcCC--CHHHHHHHHCCCCC----CC---CCCc---------------ccccCCCc
Confidence 46678999975 999999988855 999999999 6543 22 3661 12456788
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~ 492 (968)
||+|.++|+|+|+|+|.++ .+.+.++||++||||| +||+++|+||+| +|| +||||+||+|||+|+
T Consensus 142 g~lG~~lp~AvG~A~A~~~-----~~~~~~vv~i~GDGa~-~~G~~~Eal~~A~~~~lp------vi~vv~NN~~gi~~~ 209 (368)
T 1w85_A 142 IIIGAQYIQAAGVALGLKM-----RGKKAVAITYTGDGGT-SQGDFYEGINFAGAFKAP------AIFVVQNNRFAISTP 209 (368)
T ss_dssp CSTTHHHHHHHHHHHHHHH-----TTCSCCEEEEEETGGG-GSHHHHHHHHHHHHTTCC------EEEEEEECSEETTEE
T ss_pred cccCccccHHHHHHHHhHh-----hCCCCeEEEEEchhhh-hhcHHHHHHHHHHHHCcC------EEEEEEcCCccceec
Confidence 9999999999999999998 4567899999999995 699999999999 899 999999999999999
Q ss_pred CCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCC-CCCCCC-CCCHHHHHH
Q psy8742 493 PRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHN-EIDEPM-FTQPLMYKI 570 (968)
Q Consensus 493 ~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHn-e~Ddp~-yt~p~~y~~ 570 (968)
...+++.++++++|++||+|+++|||+|+++|+.|+++|++++|+++||+|||++|||++||| ++|||. ||+++||+.
T Consensus 210 ~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~ 289 (368)
T 1w85_A 210 VEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENE 289 (368)
T ss_dssp GGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHH
T ss_pred cccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHH
Confidence 888888889999999999999999999999999999999999999999999999999999999 999887 888889999
Q ss_pred HHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCC
Q psy8742 571 IKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWS 631 (968)
Q Consensus 571 i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~ 631 (968)
|++ +||+.+|+++|+++|++|++++++|+++++++|++++++|++.|.|++++++...|.
T Consensus 290 ~~~-~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 349 (368)
T 1w85_A 290 WAK-KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFE 349 (368)
T ss_dssp HHT-TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHTSCS
T ss_pred Hhc-CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccC
Confidence 996 899999999999999999999999999999999999999999998888877665553
No 8
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=2.6e-54 Score=486.64 Aligned_cols=330 Identities=17% Similarity=0.177 Sum_probs=293.5
Q ss_pred cccccccCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---cccCcchhhHHHHHHHHH
Q psy8742 261 GAEFMFINSLEQCNWIRQKLETPGIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKR---FGLEGAEILIPAMKQVID 337 (968)
Q Consensus 261 g~E~~hi~~~e~r~Wl~~~~E~~~~~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Kr---fg~eG~Ea~i~~l~~li~ 337 (968)
.+++++|.|++++ |+.. ..+.+++++++++|+.|+++|.||.++..++.+|+. +++.|+|++++++..
T Consensus 12 ~~~~~~~l~~~g~-~~~~-----~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~--- 82 (367)
T 1umd_A 12 TEEPIRLIGEEGE-WLGD-----FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAH--- 82 (367)
T ss_dssp CSSCBCCBCTTSC-BCCS-----SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHH---
T ss_pred CCCeEEEECCCCC-CCCc-----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHH---
Confidence 4578999999987 4432 235799999999999999999999999999998874 456999999987654
Q ss_pred HhhhcCCC-cEEeccCCccHHHHHHHhcCCCHHHHHHHh-cCCCCCCCCCCCcccccccccccccccCCcceeeeeecCC
Q psy8742 338 KSTELGVE-SVVMGMPHRGRLNVLANVCRKPLEQIFTQF-AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANP 415 (968)
Q Consensus 338 ~a~~~g~~-divigm~HRgr~~~La~g~gkp~~~ifae~-g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~Np 415 (968)
.+..+ |.++ ++||+++.++++|+ ++.++|++| ++.++++.|+|+ ++|++++..+ +.+++
T Consensus 83 ---~l~~~rD~i~-~s~r~~~~~~~~G~--~~~~~l~~~~g~~~g~~~G~~~-~~h~~~~~~~------------~~~~~ 143 (367)
T 1umd_A 83 ---AIRPGFDWVF-PYYRDHGLALALGI--PLKELLGQMLATKADPNKGRQM-PEHPGSKALN------------FFTVA 143 (367)
T ss_dssp ---HSCTTTSEEE-CCTTTHHHHHHHTC--CHHHHHHHHHTBTTCTTTTCSC-SSCCCBTTTT------------BCCCC
T ss_pred ---HcCCCCcEEE-eCcHHHHHHHHcCC--CHHHHHHHHhCCCCCCCCCCCC-CCCCcccccC------------cCCCC
Confidence 34555 7777 69999999999865 999999999 777777778764 9999876433 34678
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~ 492 (968)
+|+|+++|+|+|+|+|.|+ .+.+.++||++|||+| ++|+++|+||+| +|| +||||.||+|||+|+
T Consensus 144 g~lG~~l~~a~G~A~a~k~-----~~~~~~vv~i~GDGa~-~~G~~~Eal~~A~~~~lp------vi~vv~NN~~gi~~~ 211 (367)
T 1umd_A 144 SPIASHVPPAAGAAISMKL-----LRTGQVAVCTFGDGAT-SEGDWYAGINFAAVQGAP------AVFIAENNFYAISVD 211 (367)
T ss_dssp SSTTTTHHHHHHHHHHHHH-----TTCCCCEEEEEETGGG-GSHHHHHHHHHHHHTTCS------EEEEEEECSEETTEE
T ss_pred chhhhhhhHHHHHHHHHHH-----hCCCCeEEEEEccccc-ccCcHHHHHHHHHHhCcC------EEEEEecCCeeeccC
Confidence 9999999999999999998 4556789999999995 899999999999 899 999999999999998
Q ss_pred CCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCC-CCCHHHHHHH
Q psy8742 493 PRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPM-FTQPLMYKII 571 (968)
Q Consensus 493 ~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~-yt~p~~y~~i 571 (968)
....++..+++++|++||+|+++|||+|+++|+.|++.|++++++++||+|||++|||.+|||++|+|. ||+++|++.|
T Consensus 212 ~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~Yr~~~e~~~~ 291 (367)
T 1umd_A 212 YRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFW 291 (367)
T ss_dssp HHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHH
T ss_pred hhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCCCccccCCHHHHHHH
Confidence 877777789999999999999999999999999999999999999999999999999999999999886 9999999999
Q ss_pred HhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCC
Q psy8742 572 KKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWS 631 (968)
Q Consensus 572 ~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~ 631 (968)
++ +||+.+|+++|+++|++|++++++|++++++++++++++|++.|.|++++.++..|.
T Consensus 292 ~~-~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~ 350 (367)
T 1umd_A 292 RK-KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFA 350 (367)
T ss_dssp HT-TCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCCGGGGGTTSSS
T ss_pred Hc-CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhcC
Confidence 97 899999999999999999999999999999999999999999998888887766553
No 9
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-37 Score=372.70 Aligned_cols=452 Identities=12% Similarity=0.121 Sum_probs=292.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCcchhhHHHHHHHHHHhhhcCCCcEEeccCCccHHHHHHHhcC
Q psy8742 286 MNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCR 365 (968)
Q Consensus 286 ~~ls~e~~~~il~~M~~aR~fE~~l~~~~~~~Krfg~eG~Ea~i~~l~~li~~a~~~g~~divigm~HRgr~~~La~g~g 365 (968)
..++.+++.++++.| |.+...+..+ ..|-.-+..|++.+..+|... ....-|.+++...||+.++.+..|.
T Consensus 21 ~~l~~~~l~~l~~~i---R~~~~~~~~~-~~Gh~~~~lg~~~~~~~l~~~----~~~~~D~~v~~~gH~~y~~~~l~G~- 91 (621)
T 2o1s_A 21 RLLPKESLPKLCDEL---RRYLLDSVSR-SSGHFASGLGTVELTVALHYV----YNTPFDQLIWDVGHQAYPHKILTGR- 91 (621)
T ss_dssp TTSCGGGHHHHHHHH---HHHHHHHSCG-GGCTHHHHHTTHHHHHHHHHH----SCTTTSEEEESSSTTCHHHHHTTTT-
T ss_pred hhCCHHHHHHHHHHH---HHHHHHHHhh-cCCCcCCChhHHHHHHHHHhc----cCCCCCEEEEeCchHHHHHHHHhCC-
Confidence 357888999998888 4333322221 111111247888887766432 1212234454468999888887754
Q ss_pred CCHHHHHHHhcCCCCCCCCCCCcccccccccccccccCCcceeeeeecCCCCccccCchhhhHhhHhHhhcCCCCCceEE
Q psy8742 366 KPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVM 445 (968)
Q Consensus 366 kp~~~ifae~g~~~~~~~G~GdV~~Hlg~~~~~~~~~~g~~i~~~i~~NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v 445 (968)
.++ |..|... +|. .-|... ... ++ .....+|+|.+.|.|+|+|+|.+++ +.+..
T Consensus 92 --~~~-~~~~r~~----~g~---~g~~~~---~~s--~~------~~~~~G~~G~gl~~A~G~AlA~~~~-----~~~~~ 145 (621)
T 2o1s_A 92 --RDK-IGTIRQK----GGL---HPFPWR---GES--EY------DVLSVGHSSTSISAGIGIAVAAEKE-----GKNRR 145 (621)
T ss_dssp --GGG-GGGTTST----TSC---CSSCCT---TTC--TT------CCSCCSSSSCHHHHHHHHHHHHHHH-----TSCCC
T ss_pred --Hhh-hhccccc----CCC---CCCCCC---CCC--CC------CccCCcccchHHHHHHHHHHHHHHh-----CCCCe
Confidence 111 1112111 111 112111 000 00 0112478999999999999999883 45578
Q ss_pred EEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccccCCCccccc-----------------c-----
Q psy8742 446 SILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSS-----------------S----- 500 (968)
Q Consensus 446 ~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT~~~~~rss-----------------~----- 500 (968)
+||++|||++ .+|.++|+||+| ++| +|+||.||+|+++++...+... .
T Consensus 146 Vv~v~GDG~~-~~G~~~EaL~~A~~~~~p------li~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 218 (621)
T 2o1s_A 146 TVCVIGDGAI-TAGMAFEAMNHAGDIRPD------MLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSG 218 (621)
T ss_dssp EEEEEETTGG-GSHHHHHHHHHHHHHCCS------EEEEEEECC------------------------------------
T ss_pred EEEEEchhhh-hccHHHHHHHHHHhhCCC------EEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhc
Confidence 9999999995 799999999999 899 9999999999999875432110 0
Q ss_pred -------------------cHhHhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCC-C
Q psy8742 501 -------------------YCTDVARVVNAPIF-HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEID-E 559 (968)
Q Consensus 501 -------------------~~td~Ak~~giP~~-hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~D-d 559 (968)
....+++++|+.++ .|||+|++++..|.++|.+ .++|+|||+.|+|.+||+... +
T Consensus 219 ~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~gP~lI~v~t~kg~G~~~~e~~ 294 (621)
T 2o1s_A 219 VPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRD----LKGPQFLHIMTKKGRGYEPAEKD 294 (621)
T ss_dssp --------------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH----SCSEEEEEEECCCTTCCCCC---
T ss_pred cchHHHHHHHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH----cCCCEEEEEEEecccCCChhhcC
Confidence 00478899999999 9999999999999998864 478999999999999998432 1
Q ss_pred CCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCC
Q psy8742 560 PMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDP 639 (968)
Q Consensus 560 p~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~ 639 (968)
| ..|.. ..|... ..|. +. . ..
T Consensus 295 ~--------~~~H~-~~~f~~------~~~~---------------------------~~-~--------------~~-- 315 (621)
T 2o1s_A 295 P--------ITFHA-VPKFDP------SSGC---------------------------LP-K--------------SS-- 315 (621)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c--------hhccC-CCCCCC------CcCc---------------------------cc-c--------------cc--
Confidence 1 13321 111100 0000 00 0 00
Q ss_pred CccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhhhhcCCcEEEeccccC
Q psy8742 640 LKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSLLKEGIHVRLSGQDVE 719 (968)
Q Consensus 640 ~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~ 719 (968)
....+. . -++...|. .++.++.+|.+.++|+.
T Consensus 316 ----~~~~~~--~----------------~~~~~~l~--------------------------~~~~~d~~v~~~~~d~~ 347 (621)
T 2o1s_A 316 ----GGLPSY--S----------------KIFGDWLC--------------------------ETAAKDNKLMAITPAMR 347 (621)
T ss_dssp ------CCBH--H----------------HHHHHHHH--------------------------HHHHHCTTEEEEESSCT
T ss_pred ----cchHHH--H----------------HHHHHHHH--------------------------HHHhhCcCEEEEeCccc
Confidence 000000 0 01111111 23345677889999997
Q ss_pred CCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHH
Q psy8742 720 RGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIID 799 (968)
Q Consensus 720 rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~D 799 (968)
.|+ + +.++.++| +.|++|++|+|.+++|+++|+|+.|.+|++ ++ |++|+.-| +|
T Consensus 348 ~~~--------------~-----~~~~~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~--~~-~~~F~~~a---~d 401 (621)
T 2o1s_A 348 EGS--------------G-----MVEFSRKF-PDRYFDVAIAEQHAVTFAAGLAIGGYKPIV--AI-YSTFLQRA---YD 401 (621)
T ss_dssp TTT--------------T-----CHHHHHHC-TTTEEECCSCHHHHHHHHHHHHHTTCEEEE--EE-ETTGGGGG---HH
T ss_pred CCc--------------C-----hHHHHHhC-CCceEecCcCHHHHHHHHHHHHHCCCEEEE--Ee-hHhHHHHH---HH
Confidence 653 1 24566778 789999999999999999999999999988 98 99998666 99
Q ss_pred HHHhhhccccccccCcEEEcCc-cCCC-CCcccCCChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHh
Q psy8742 800 QFISSGQAKWVRQSGLVMLLPH-GLEG-MGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPA 877 (968)
Q Consensus 800 q~i~~~~~kw~~~~~lv~~lP~-G~~g-~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa 877 (968)
|+++.... ...|+|++++| |+.| .||.||+.--.++| .++| ||+|+.|+||.
T Consensus 402 qi~~~~a~---~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~-------~~iP----------------~l~v~~P~d~~ 455 (621)
T 2o1s_A 402 QVLHDVAI---QKLPVLFAIDRAGIVGADGQTHQGAFDLSYL-------RCIP----------------EMVIMTPSDEN 455 (621)
T ss_dssp HHHHTTTT---TTCCCEEEEESCBCCCTTCGGGCBCSHHHHT-------TTST----------------TCEEECCSSHH
T ss_pred HHHHHHHh---cCCCEEEEEECCccCCCCCCccCchHHHHHH-------hcCC----------------CCEEEecCCHH
Confidence 99985422 36899999999 5566 68999987223777 7889 99999999999
Q ss_pred HHHHHHHHHHhc-CCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccccCCCCccEEEEecchhHHHHHHH
Q psy8742 878 NLFHILRRQIAL-PFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKA 956 (968)
Q Consensus 878 ~~~hlLr~q~~~-~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~ 956 (968)
+++++|+.+++. + +|++|++||..+........ .+|..|. +..+ .+ .. +-+|+|+|..++..+++
T Consensus 456 e~~~~l~~a~~~~~--~Pv~i~~~r~~~~~~~~~~~-~~~~~G~-~~~~-~~-------g~--dv~iva~G~~~~~a~~A 521 (621)
T 2o1s_A 456 ECRQMLYTGYHYND--GPSAVRYPRGNAVGVELTPL-EKLPIGK-GIVK-RR-------GE--KLAILNFGTLMPEAAKV 521 (621)
T ss_dssp HHHHHHHHHHHCCS--SCEEEECCSSBCCCCCCCCC-CCCCTTC-CEEE-EC-------CS--SEEEEEESTTHHHHHHH
T ss_pred HHHHHHHHHHHcCC--CCEEEEeCCCCCCCCCCCcc-ccccCCc-eEEe-ec-------CC--CEEEEEecHHHHHHHHH
Confidence 999999999987 6 99999999988743211111 3343342 4332 22 12 35899999999998888
No 10
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=1.1e-35 Score=354.94 Aligned_cols=395 Identities=13% Similarity=0.143 Sum_probs=269.4
Q ss_pred CCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcccc
Q psy8742 414 NPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFT 490 (968)
Q Consensus 414 NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~T 490 (968)
+.+|||...|.|+|+|+|.++. .+.+..++|++|||++ .+|.++|+||+| +|| .+|+|+.||+|+++
T Consensus 119 ~~G~lG~gl~~A~G~AlA~~~~----~~~~~~vv~v~GDG~~-~eG~~~Eal~~A~~~~l~-----~livi~nnN~~~i~ 188 (616)
T 3mos_A 119 ATGSLGQGLGAACGMAYTGKYF----DKASYRVYCLLGDGEL-SEGSVWEAMAFASIYKLD-----NLVAILDINRLGQS 188 (616)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHT----SCCSCCEEEEEETGGG-GSHHHHHHHHHHHHTTCT-----TEEEEEEECSBCSS
T ss_pred cccccCCccHHHHHHHHHHHHh----CCCCCEEEEEECcccc-ccCcHHHHHHHHHHcCCC-----cEEEEEECCCCCCc
Confidence 3478999999999999999863 2234679999999995 699999999999 787 37889999999999
Q ss_pred cCCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCCCCHHHHHH
Q psy8742 491 TDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKI 570 (968)
Q Consensus 491 T~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~yt~p~~y~~ 570 (968)
++.........+.+++++||+++++|||+|++++..|++.| .++|+||++.|+|.+||+..+++. .
T Consensus 189 ~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~------~~~P~lI~v~T~kg~G~~~~e~~~--------~ 254 (616)
T 3mos_A 189 DPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA------KHQPTAIIAKTFKGRGITGVEDKE--------S 254 (616)
T ss_dssp SBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC------CSSCEEEEEECCTTTTSTTTTTCS--------S
T ss_pred CCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc------CCCCEEEEEEEecccccccccCch--------h
Confidence 98777666667889999999999999999999999988543 578999999999999998776553 2
Q ss_pred HHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCccCCCCCCHH
Q psy8742 571 IKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINEN 650 (968)
Q Consensus 571 i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~ 650 (968)
| |..| +++++++++.+++++.+++. ....+.+.+.......|...
T Consensus 255 ~--Hg~~-------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------------- 299 (616)
T 3mos_A 255 W--HGKP-------------LPKNMAEQIIQEIYSQIQSK---KKILATPPQEDAPSVDIANI----------------- 299 (616)
T ss_dssp C--TTCC-------------CCHHHHHHHHHHHHHTCCCC---CCCCCBCCCCCCCCCCCSCC-----------------
T ss_pred h--cCCC-------------CCHHHHHHHHHHHHHHHHhh---hhhCcCccchhhhhhhhhcc-----------------
Confidence 2 2222 45555555554443322110 00001111110000001000
Q ss_pred HHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhhhhcCCcEEEeccccCCCcccccccee
Q psy8742 651 TLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVL 730 (968)
Q Consensus 651 ~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~ 730 (968)
++...| .+.. +..+..--|-..+...|+.++.+|++.|+|+..|||
T Consensus 300 -------~~~~~~----~~~~----------------~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~------- 345 (616)
T 3mos_A 300 -------RMPSLP----SYKV----------------GDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTF------- 345 (616)
T ss_dssp -------CCSSCC----CCCT----------------TCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHS-------
T ss_pred -------ccCCCc----cccc----------------ccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcc-------
Confidence 000111 0100 000000011112223556678888899999987764
Q ss_pred eeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccc
Q psy8742 731 HHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWV 810 (968)
Q Consensus 731 ~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~ 810 (968)
|..+.++| +.|++|++|+|.+++|+++|+|+.|.++.+ ++||++|+.-| +||++..+-.
T Consensus 346 ------------~~~~~~~~-p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~--~~~f~~Fl~~a---~dqi~~~a~~--- 404 (616)
T 3mos_A 346 ------------SEIFKKEH-PDRFIECYIAEQNMVSIAVGCATRNRTVPF--CSTFAAFFTRA---FDQIRMAAIS--- 404 (616)
T ss_dssp ------------HHHHHHHC-GGGEEECCSCHHHHHHHHHHHHGGGCCEEE--EEEEGGGGGGG---HHHHHHHHHT---
T ss_pred ------------hhhHHHhC-CCCeEEcCccHHHHHHHHHHHHHcCCCCEE--EEehHHHHHHH---HHHHHHHHHh---
Confidence 23455566 679999999999999999999999975444 89999999777 9999876422
Q ss_pred cccCcEEEcCc-cC-CC-CCcccCCChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHH
Q psy8742 811 RQSGLVMLLPH-GL-EG-MGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQI 887 (968)
Q Consensus 811 ~~~~lv~~lP~-G~-~g-~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~ 887 (968)
..|+++.+.| |. .| .||.|.+---+++| .++| ||+|+.|++|.+++++|+.++
T Consensus 405 -~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l-------~~iP----------------~l~V~~P~d~~e~~~~l~~a~ 460 (616)
T 3mos_A 405 -ESNINLCGSHCGVSIGEDGPSQMALEDLAMF-------RSVP----------------TSTVFYPSDGVATEKAVELAA 460 (616)
T ss_dssp -TCCEEEEEESBSGGGCTTCGGGCBSSHHHHH-------HTST----------------TEEEECCCSHHHHHHHHHHHH
T ss_pred -CCCeEEEEECCCccccCCCCcccCHHHHHHh-------cCCC----------------CCEEEecCCHHHHHHHHHHHH
Confidence 3578887776 54 34 57888544356888 8899 999999999999999999999
Q ss_pred hcCCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccccCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 888 ALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 888 ~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
..+ .|+++..++.- .|....+..+|.-|. .. |+.+ .++.+.+|+|+|..++..+++.++
T Consensus 461 ~~~--gp~~ir~~r~~--~p~~~~~~~~~~~Gk-a~-vl~e-------g~d~dv~iva~G~~v~~al~Aa~~ 519 (616)
T 3mos_A 461 NTK--GICFIRTSRPE--NAIIYNNNEDFQVGQ-AK-VVLK-------SKDDQVTVIGAGVTLHEALAAAEL 519 (616)
T ss_dssp TCC--SEEEEECCSSC--CBCCSCTTCCCCTTC-CE-EEEC-------CSSEEEEEECCTHHHHHHHHHHHH
T ss_pred hcC--CCEEEEEeCCC--CCccCCCcccccCCe-EE-EEEe-------CCCCCEEEEEeCHHHHHHHHHHHH
Confidence 765 99888776531 111112223343332 32 3322 233457899999999998887765
No 11
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=2.3e-33 Score=338.44 Aligned_cols=423 Identities=13% Similarity=0.108 Sum_probs=277.1
Q ss_pred cCCCCccccCchhhhHhhHhHhhc---CC--CCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEc
Q psy8742 413 ANPSHLEAVDPVVQGKTRAEQFYR---GD--GEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVN 484 (968)
Q Consensus 413 ~NpShLea~~PvA~G~A~A~q~~~---~~--~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeN 484 (968)
...+|||.+.|.|+|+|+|.++.. +. ..-.+..++|++|||+ ..+|.++|+||+| +|| -+|+||.|
T Consensus 113 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~-~~eG~~~Eal~~A~~~~L~-----~li~i~~n 186 (680)
T 1gpu_A 113 VTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGC-LQEGISSEASSLAGHLKLG-----NLIAIYDD 186 (680)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH-HHSHHHHHHHHHHHHTTCT-----TEEEEEEE
T ss_pred eccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCc-cchhhHHHHHHHHHHhCCC-----cEEEEEEC
Confidence 444789999999999999998642 00 0113568999999999 5799999999999 777 49999999
Q ss_pred CCcccccCCCcccccccHhHhhhhcCCcEE-EEeCC-CHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCC--
Q psy8742 485 NQIGFTTDPRFSRSSSYCTDVARVVNAPIF-HVNSD-DPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEP-- 560 (968)
Q Consensus 485 Nqig~TT~~~~~rss~~~td~Ak~~giP~~-hVDGn-D~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp-- 560 (968)
|+|+++++...+. +..+.+++++||++++ .|||+ |+++++.|++.|.+ ..++|+||++.|+|.+||++.|.+
T Consensus 187 N~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~ 262 (680)
T 1gpu_A 187 NKITIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAGSHSV 262 (680)
T ss_dssp CSEETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTTSGGG
T ss_pred CCceEeccccccc-CccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccccCCCCcc
Confidence 9999999876554 4678899999999999 99999 99999999999876 467899999999999999988763
Q ss_pred --CCCCHHHHHHHHhCCCHHH-------------HHHHHHHHccCCCHHHHHHHHHHHH---HHHHHHHHHHhhccCCCC
Q psy8742 561 --MFTQPLMYKIIKKTPPALD-------------KYANKLIEEKVVTEEQVKDVKEKYD---KICEEAYVNARKETHIKY 622 (968)
Q Consensus 561 --~yt~p~~y~~i~~~~dpi~-------------~y~~~Li~~Gv~t~ee~~~i~~e~~---~~l~~a~~~A~~~~~~~~ 622 (968)
.|+.+++++.|++. .+.. .|...+.++|--.+.++.+...++. -++.+.++...+...|
T Consensus 263 H~~~~~~ee~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~p-- 339 (680)
T 1gpu_A 263 HGAPLKADDVKQLKSK-FGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLP-- 339 (680)
T ss_dssp SSSCCCHHHHHHHHHH-TTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCC--
T ss_pred CCCCCCHHHHHHHHHH-cCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhChHHHHHHHHHhcccCC--
Confidence 58999999988752 2221 1111111111000111111111111 0111111111111111
Q ss_pred ccccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhh
Q psy8742 623 KDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFG 702 (968)
Q Consensus 623 ~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~ 702 (968)
. .|..-. |... ..+ +..+. |. |+.++ ..
T Consensus 340 ~-----~~~~~~-~~~~--~~~----------------------~~~a~----------r~----------a~~~~--L~ 367 (680)
T 1gpu_A 340 A-----NWESKL-PTYT--AKD----------------------SAVAT----------RK----------LSETV--LE 367 (680)
T ss_dssp T-----TGGGGS-CCCC--TTS----------------------CCBCH----------HH----------HHHHH--HH
T ss_pred c-----hhhhhc-hhhc--cCC----------------------cchHH----------HH----------HHHHH--HH
Confidence 1 121100 0000 000 00000 10 00111 12
Q ss_pred hhhhcCCcEEEeccccCC--CccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCC-CC-
Q psy8742 703 SLLKEGIHVRLSGQDVER--GTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTN-PN- 778 (968)
Q Consensus 703 sLl~eg~~Vrl~GqDv~r--GtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g-~~- 778 (968)
.++....+|++.|+|+.. +|| -+ +-+.|..+.++..+| +.|++|++|+|.+++|++.|+|+.| .+
T Consensus 368 ~~~~~~p~v~~~~aDl~~s~~~~---------~~-g~~~f~~~~~~~~~~-p~R~~d~gIaE~~~vg~a~GlA~~Gg~~~ 436 (680)
T 1gpu_A 368 DVYNQLPELIGGSADLTPSNLTR---------WK-EALDFQPPSSGSGNY-SGRYIRYGIREHAMGAIMNGISAFGANYK 436 (680)
T ss_dssp HHTTTCTTEEEEESSCHHHHTCS---------CT-TCCEECCTTTSSEET-TCCEEECCSCHHHHHHHHHHHHHHCTTCE
T ss_pred HHHhhCCCEEEEecccccccccc---------cc-cccccccccccccCC-CCceecCCccHHHHHHHHHHHHhcCCCce
Confidence 344567788899999975 221 00 002344444444578 8999999999999999999999998 89
Q ss_pred ccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cC-CC-CCcccCCChHH--HHhcccCCCCccccccc
Q psy8742 779 TLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GL-EG-MGPEHSSARLE--RFLQMSDDEPIRVILVL 853 (968)
Q Consensus 779 ~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~-~g-~GpeHSs~r~e--r~lql~~~~~~~~p~~~ 853 (968)
|++ . +|.+|+.-+ .||+-..+ ....|+|++++| |. .| -||.| ++ +| .+| .++|
T Consensus 437 P~~--~-~f~~F~~~~---~~air~~a----~~~lpvv~v~t~~g~g~G~dG~tH-q~-~edla~l-------r~iP--- 494 (680)
T 1gpu_A 437 PYG--G-TFLNFVSYA---AGAVRLSA----LSGHPVIWVATHDSIGVGEDGPTH-QP-IETLAHF-------RSLP--- 494 (680)
T ss_dssp EEE--E-EEHHHHGGG---HHHHHHHH----HHTCCCEEEEECCSGGGCTTCTTT-CC-SSHHHHH-------HTSS---
T ss_pred EEE--e-ehHHHHHHH---HHHHHHHH----hcCCCEEEEEeCCccccCCCCCcc-CC-HHHHHHh-------cCCC---
Confidence 998 3 577776544 67754432 235799999976 44 34 68999 66 77 788 8899
Q ss_pred chhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhc-CCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCcc
Q psy8742 854 VPIEFAVRQLHDINWIIANCTTPANLFHILRRQIAL-PFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSIS 932 (968)
Q Consensus 854 ~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~-~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~ 932 (968)
||+|+.|++|.+++++|+.++++ + +|++|..||.-+..-.. .....+.-|. .|+.+.
T Consensus 495 -------------~l~V~~Pad~~e~~~~l~~A~~~~~--~Pv~i~~~r~~~~~~~~-~~~~~~~~G~---~vl~~g--- 552 (680)
T 1gpu_A 495 -------------NIQVWRPADGNEVSAAYKNSLESKH--TPSIIALSRQNLPQLEG-SSIESASKGG---YVLQDV--- 552 (680)
T ss_dssp -------------SCEEECCCSHHHHHHHHHHHHHCSS--CCEEEECCSSCBCCCTT-CCHHHHTTSC---EEEECC---
T ss_pred -------------CCEEEecCCHHHHHHHHHHHHHhCC--CcEEEEecCCCCCCCCC-cchhhccCCC---EEEecC---
Confidence 99999999999999999999997 7 99999999865422110 1111122232 233331
Q ss_pred ccCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 933 ERKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 933 ~~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
++-+-+|+++|......+++.++
T Consensus 553 ----~~~dvtiva~G~~v~~al~Aa~~ 575 (680)
T 1gpu_A 553 ----ANPDIILVATGSEVSLSVEAAKT 575 (680)
T ss_dssp ----SSCSEEEEECTHHHHHHHHHHHH
T ss_pred ----CCCCEEEEEEcHHHHHHHHHHHH
Confidence 11345899999988887777654
No 12
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=1.9e-34 Score=345.42 Aligned_cols=353 Identities=15% Similarity=0.191 Sum_probs=255.2
Q ss_pred CCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCccccc
Q psy8742 415 PSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTT 491 (968)
Q Consensus 415 pShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig~TT 491 (968)
.+|+|.+.|.|+|+|+|.+++ +.+..+||++|||+| .+|.++|+||+| ++| +|+||.||+|++++
T Consensus 122 ~G~~G~gl~~AvG~AlA~k~~-----~~~~~Vv~v~GDG~~-~~G~~~EaL~~A~~~~~p------li~IvnnN~~~i~~ 189 (629)
T 2o1x_A 122 VGHASTSLTNALGMALARDAQ-----GKDFHVAAVIGDGSL-TGGMALAALNTIGDMGRK------MLIVLNDNEMSISE 189 (629)
T ss_dssp CSSSSCHHHHHHHHHHHHHHH-----TCCCCEEEEEETTGG-GSHHHHHHHHHHHHHCCS------EEEEEEECSBSSSB
T ss_pred CCcccccHhHHHHHHHHHHHh-----CCCCeEEEEEchhhh-hccHHHHHHHHHHhhCCC------EEEEEECCCCCCCC
Confidence 478999999999999999883 455789999999995 799999999999 899 99999999999988
Q ss_pred CCCccccc------------------------------------ccH------h--HhhhhcCCcEE-EEeCCCHHHHHH
Q psy8742 492 DPRFSRSS------------------------------------SYC------T--DVARVVNAPIF-HVNSDDPEAVIH 526 (968)
Q Consensus 492 ~~~~~rss------------------------------------~~~------t--d~Ak~~giP~~-hVDGnD~eAV~~ 526 (968)
+...+... .++ . .++++||++++ +|||+|++++..
T Consensus 190 ~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~ 269 (629)
T 2o1x_A 190 NVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVW 269 (629)
T ss_dssp CCSSHHHHC---------------------------------------------CCCTTGGGTCEEEEEEESSCHHHHHH
T ss_pred ChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHH
Confidence 76421100 112 3 78999999999 999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeecCCCCCC--CCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q psy8742 527 VCNLAAEWRNTFHKDVVIDIVSYRRNGHNE--IDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYD 604 (968)
Q Consensus 527 a~~~Ave~rr~~~gPvlIel~tYR~~GHne--~Ddp~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~ 604 (968)
|.++|. +.++|+|||+.|++-+||.. .+. ..|.. -+
T Consensus 270 al~~A~----~~~~P~lI~v~t~kg~G~~~~e~~~---------~~~H~--~~--------------------------- 307 (629)
T 2o1x_A 270 LLERLV----DLDGPTILHIVTTKGKGLSYAEADP---------IYWHG--PA--------------------------- 307 (629)
T ss_dssp HHHHHT----TSSSEEEEEEECCTTTTCHHHHHCT---------TGGGS--CC---------------------------
T ss_pred HHHHHH----hcCCCEEEEEEEecCCCCChhHcCC---------ccccc--Cc---------------------------
Confidence 888874 45799999999999999851 111 01211 10
Q ss_pred HHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHH
Q psy8742 605 KICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQ 684 (968)
Q Consensus 605 ~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~ 684 (968)
+. ++ +++.... .. + . +. .+.
T Consensus 308 -------------~f-~~---------------------~~~~~~~---------~~-~---~--~~----~~~------ 327 (629)
T 2o1x_A 308 -------------KF-DP---------------------ATGEYVP---------SS-A---Y--SW----SAA------ 327 (629)
T ss_dssp -------------SB-CT---------------------TTCCBCC---------CC-C---C--BH----HHH------
T ss_pred -------------cC-Cc---------------------CcCcccc---------cc-h---H--HH----HHH------
Confidence 00 00 0110000 00 0 0 00 000
Q ss_pred hhhhhchhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHH
Q psy8742 685 MVESRTVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFG 764 (968)
Q Consensus 685 ~~~~~~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~a 764 (968)
+.++|. .++.++.+|.+.++|+..|+ + +.++.++| +.|++|++|+|.+
T Consensus 328 ----------~~~~l~--~~~~~d~~v~~i~~d~~~~~--------------~-----~~~f~~~~-~~r~~~~gIaE~~ 375 (629)
T 2o1x_A 328 ----------FGEAVT--EWAKTDPRTFVVTPAMREGS--------------G-----LVEFSRVH-PHRYLDVGIAEEV 375 (629)
T ss_dssp ----------HHHHHH--HHHHHCTTEEEEESSCTTTT--------------T-----CHHHHHHC-GGGEEECCSCHHH
T ss_pred ----------HHHHHH--HHhhhCcCEEEEeccccCCc--------------C-----hHHHHHhc-CcceEeccccHHH
Confidence 111111 23446777889999997653 1 34566778 8899999999999
Q ss_pred HHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccC-CC-CCcccCCChHH-HHhcc
Q psy8742 765 VLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGL-EG-MGPEHSSARLE-RFLQM 841 (968)
Q Consensus 765 vlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~-~g-~GpeHSs~r~e-r~lql 841 (968)
++|++.|+|+.|.+|++ +. |.+|+.-| +||+++..-. ...|+|++.+||. .| -||.||+. .+ ++|
T Consensus 376 ~~~~a~G~A~~G~rp~~--~~-~~~F~~~a---~dqi~~~~a~---~~~pvv~~~~~~g~~g~dG~tH~~~-~d~a~~-- 443 (629)
T 2o1x_A 376 AVTTAAGMALQGMRPVV--AI-YSTFLQRA---YDQVLHDVAI---EHLNVTFCIDRAGIVGADGATHNGV-FDLSFL-- 443 (629)
T ss_dssp HHHHHHHHHHTTCEEEE--EE-EHHHHGGG---HHHHHHTTTT---TTCCCEEEEESBBCCCTTCTTTCBC-SHHHHT--
T ss_pred HHHHHHHHHHcCCEEEE--Ee-cHHHHHHH---HHHHHHHHhh---cCCCEEEEEECCccCCCCCcccCcc-HHHHHH--
Confidence 99999999999999999 88 99998777 9999885422 3689999999854 56 58999997 44 888
Q ss_pred cCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCCCc
Q psy8742 842 SDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTE 921 (968)
Q Consensus 842 ~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~ 921 (968)
.++| ||+|+.|++|.+++++|+.+++.+ .|++|..|+..+.... .....++.-|.
T Consensus 444 -----r~iP----------------~l~v~~P~d~~e~~~~~~~a~~~~--~Pv~i~~~r~~~~~~~-~~~~~~~~~G~- 498 (629)
T 2o1x_A 444 -----RSIP----------------GVRIGLPKDAAELRGMLKYAQTHD--GPFAIRYPRGNTAQVP-AGTWPDLKWGE- 498 (629)
T ss_dssp -----TTST----------------TCEEECCSSHHHHHHHHHHHHHSS--SCEEEECCSSBCCCCC-TTCCCCCCTTC-
T ss_pred -----HccC----------------CcEEEecCCHHHHHHHHHHHHhCC--CCEEEEecCCCCCCCc-ccccccccCCc-
Confidence 7899 999999999999999999999986 9999999988763211 11112222222
Q ss_pred eEEeccCCCccccCCCCccEEEEecchhHHHHHHHHHhc
Q psy8742 922 FLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDN 960 (968)
Q Consensus 922 F~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~~ 960 (968)
.. ++.+ . -+-+|+++|-.+...+++.++.
T Consensus 499 ~~-~~~~-------g--~dv~iva~G~~v~~a~~Aa~~L 527 (629)
T 2o1x_A 499 WE-RLKG-------G--DDVVILAGGKALDYALKAAEDL 527 (629)
T ss_dssp CE-EEEC-------C--SSEEEEECHHHHHHHHHHHTTC
T ss_pred eE-EEee-------C--CCEEEEEecHHHHHHHHHHHHh
Confidence 22 2211 1 2358999999988888776643
No 13
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=6.5e-35 Score=350.54 Aligned_cols=411 Identities=14% Similarity=0.099 Sum_probs=276.1
Q ss_pred ecCCCCccccCchhhhHhhHhHhhcC-----CCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEE
Q psy8742 412 VANPSHLEAVDPVVQGKTRAEQFYRG-----DGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVV 483 (968)
Q Consensus 412 ~~NpShLea~~PvA~G~A~A~q~~~~-----~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVe 483 (968)
....+|+|.+.|.|+|+|+|.++... +.+..+..++|++|||+ ..+|.++|+||+| +|| -+|+||.
T Consensus 114 ~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~-~~eG~~~Eal~~A~~~~L~-----~li~i~~ 187 (651)
T 2e6k_A 114 EVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGD-LMEGVSGEAASLAGHWGLS-----KLIVFWD 187 (651)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH-HHSHHHHHHHHHHHHTTCT-----TEEEEEE
T ss_pred eeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhh-hchhHHHHHHHHHHHcCCC-----eEEEEEE
Confidence 34457899999999999999986420 00113578999999999 5899999999999 777 4999999
Q ss_pred cCCcccccCCCcccccccHhHhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCCCC
Q psy8742 484 NNQIGFTTDPRFSRSSSYCTDVARVVNAPIF-HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMF 562 (968)
Q Consensus 484 NNqig~TT~~~~~rss~~~td~Ak~~giP~~-hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp~y 562 (968)
||+|+++++..... .....+++++||++++ .|||+|+++++.|.+.|.+ .++|+||++.|+|.+||++.|...|
T Consensus 188 nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~~~~~~~~ 262 (651)
T 2e6k_A 188 DNRISIDGPTDLAF-TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSPKQDSAKA 262 (651)
T ss_dssp ECCEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTSTTTTSGGG
T ss_pred CCCccccccccccc-CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEecccccccccccc
Confidence 99999998876655 5678899999999999 9999999999999999875 6789999999999999996555444
Q ss_pred ----CCHHHHHHHHhCCCHHHHHHHHHHHccCCC---H-HHHHHHHHHHHHHHHHH----------HHHHhhccCCCCcc
Q psy8742 563 ----TQPLMYKIIKKTPPALDKYANKLIEEKVVT---E-EQVKDVKEKYDKICEEA----------YVNARKETHIKYKD 624 (968)
Q Consensus 563 ----t~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t---~-ee~~~i~~e~~~~l~~a----------~~~A~~~~~~~~~~ 624 (968)
..+++++.|++ ++|+. +...++..++.. . +.-+..+.++.+.+.+. ++.......| .
T Consensus 263 H~~~~~~~e~~~~~~-~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p--~- 337 (651)
T 2e6k_A 263 HGEPLGPEAVEATRR-NLGWP-YPPFVVPEEVYRHMDMREKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELP--P- 337 (651)
T ss_dssp TSSCCHHHHHHHHHH-HHTCC-CCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCC--C-
T ss_pred cccCCCHHHHHHHHH-HcCCC-cccccCChHHHHHHHHhhhchhhHHHHHHHHHHhhhhChHHHHHHHHHhcCcCC--c-
Confidence 45678888765 34432 111111111100 0 00011222333333221 1111111111 1
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhh
Q psy8742 625 WLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSL 704 (968)
Q Consensus 625 ~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sL 704 (968)
|.... +. ....++ . -.++...| ..+
T Consensus 338 -----~~~~~-~~-----~~~~~~--~----------------r~a~~~~L--------------------------~~~ 362 (651)
T 2e6k_A 338 -----LPEEP-PS-----FDKPIA--T----------------RAASGRAL--------------------------NLL 362 (651)
T ss_dssp -----CCCSC-CC-----CCSCBC--H----------------HHHHHHHH--------------------------HHH
T ss_pred -----hhhhc-cc-----cCccHH--H----------------HHHHHHHH--------------------------HHH
Confidence 22100 00 000000 0 01111111 233
Q ss_pred hhcCCcEEEeccccCCCccccccceeeeeccCCceee-cCCCCCC-CCCCcEeecCCcchHHHHHHhhhcccCC-CCccc
Q psy8742 705 LKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYR-PLNNLYP-DQAPYTVCNSSLSEFGVLGFELGFSMTN-PNTLV 781 (968)
Q Consensus 705 l~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~-~~~~l~~-~~g~~~v~nspLsE~avlG~~~G~s~~g-~~~l~ 781 (968)
+....+|++.|+|++.-+ +.+. .+.++.+ +| +.|++|++|+|.+++|++.|+|+.| .+|++
T Consensus 363 ~~~~p~~~~~~aDl~~s~---------------~~~~~~~~~f~~~~~-p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~ 426 (651)
T 2e6k_A 363 APRLPELLGGSADLTPSN---------------NTKAEGMEDFSRANP-LGRYLHFGVREHAMGAILNGLNLHGGYRAYG 426 (651)
T ss_dssp GGGCTTEEEEESSCHHHH---------------TCSCTTCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCEEEE
T ss_pred HhhCCCEEEEeCcccccc---------------ccccccccccCccCC-CCceEecCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 445677889999997411 1232 5667776 88 8999999999999999999999998 99999
Q ss_pred ccc--chhhhhHhhhhHHHHHHHhhhccccccccCcEEEc-CccC-CC-CCcccCCChHH--HHhcccCCCCcccccccc
Q psy8742 782 CWE--AQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLL-PHGL-EG-MGPEHSSARLE--RFLQMSDDEPIRVILVLV 854 (968)
Q Consensus 782 iWE--~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~l-P~G~-~g-~GpeHSs~r~e--r~lql~~~~~~~~p~~~~ 854 (968)
+ +||.||+..| |-+ .+ ....|+|+++ +.|. .| -||.| ++ +| .+| .++|
T Consensus 427 --~t~~~F~~~~~~a--ir~----~a----~~~lpvv~~~t~~g~g~G~dG~tH-q~-~edla~l-------r~iP---- 481 (651)
T 2e6k_A 427 --GTFLVFSDYMRPA--IRL----AA----LMGVPTVFVFTHDSIALGEDGPTH-QP-VEHLMSL-------RAMP---- 481 (651)
T ss_dssp --EEEGGGGGGSHHH--HHH----HH----HHTCCCEEEEECCSGGGCTTCTTT-CC-SSHHHHH-------HTST----
T ss_pred --EeHHHHHHHHHHH--HHH----HH----hcCCCEEEEEECCccccCCCcCcc-cc-HHHHHHh-------cCCC----
Confidence 7 9999998776 111 11 1257999995 5554 34 78999 77 88 777 7899
Q ss_pred hhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhc-CCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccc
Q psy8742 855 PIEFAVRQLHDINWIIANCTTPANLFHILRRQIAL-PFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISE 933 (968)
Q Consensus 855 ~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~-~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~ 933 (968)
||+|+.|+++.+++++|+.+++. + .|++|..|+..+..-.. ...+++..|. .|+.+.
T Consensus 482 ------------~l~V~~Pad~~E~~~~l~~A~~~~~--~Pv~i~~~r~~~~~~~~-~~~~~~~~G~---~vl~~g---- 539 (651)
T 2e6k_A 482 ------------NLFVIRPADAYETFYAWLVALRRKE--GPTALVLTRQAVPLLSP-EKARGLLRGG---YVLEDV---- 539 (651)
T ss_dssp ------------TCEEECCSSHHHHHHHHHHHHHCCS--SCEEEECCSSCBCCCCH-HHHGGGGGSS---EEEECC----
T ss_pred ------------CcEEEecCCHHHHHHHHHHHHHcCC--CCEEEEEeCCCCCCCCc-chhhhhcCCC---EEEeeC----
Confidence 99999999999999999999997 6 89999999876632110 0111232232 234331
Q ss_pred cCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 934 RKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 934 ~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
++-+-+|+++|......+++.++
T Consensus 540 ---~~~dv~iva~G~~v~~al~Aa~~ 562 (651)
T 2e6k_A 540 ---EEPQGVLVATGSEVHLALRAQAL 562 (651)
T ss_dssp ---SSCSEEEEECTTHHHHHHHHHHH
T ss_pred ---CCCCEEEEEECHHHHHHHHHHHH
Confidence 11345899999998877766543
No 14
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.6e-33 Score=339.12 Aligned_cols=427 Identities=12% Similarity=0.099 Sum_probs=278.8
Q ss_pred CCCCccccCchhhhHhhHhHhhc---CCC-----CCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEE
Q psy8742 414 NPSHLEAVDPVVQGKTRAEQFYR---GDG-----EGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIV 482 (968)
Q Consensus 414 NpShLea~~PvA~G~A~A~q~~~---~~~-----~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVV 482 (968)
..+|||.+.|.|+|+|+|.++.. +.+ ++.+..++|++|||+ ..+|++||+||+| +|| .+|+||
T Consensus 131 ~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~-l~eG~~~EAl~~A~~~~L~-----nli~i~ 204 (700)
T 3rim_A 131 TTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGD-IEEGVTSEASSLAAVQQLG-----NLIVFY 204 (700)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHH-HHSHHHHHHHHHHHHTTCT-----TEEEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcc-cccChHHHHHHHHHHcCCC-----cEEEEE
Confidence 34789999999999999999742 110 245678999999999 6899999999999 886 399999
Q ss_pred EcCCcccccCCCcccccccHhHhhhhcCCcEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCC-
Q psy8742 483 VNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHV-NSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEP- 560 (968)
Q Consensus 483 eNNqig~TT~~~~~rss~~~td~Ak~~giP~~hV-DGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp- 560 (968)
.||+|+++++...+. +..+.+++++||++++.| ||+|+++|+.|++.|.+ ..++|+||++.|+|.+||....+.
T Consensus 205 d~N~~si~~~~~~~~-~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~---~~~~P~lI~~~T~kG~G~~~~e~~~ 280 (700)
T 3rim_A 205 DRNQISIEDDTNIAL-CEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQA---VTDRPSFIALRTVIGYPAPNLMDTG 280 (700)
T ss_dssp EECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSH
T ss_pred ECCCcccccchhhcc-chhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHH---cCCCCEEEEEEEEeeecCCccCCCc
Confidence 999999999877654 567899999999999999 99999999999999864 468999999999999999854332
Q ss_pred ----CCCCHHHHHHHHhC------------CCHHHHHHHHHHHccCCCHHHHHHHHHHHHH---HHHHHHHHHhhccCCC
Q psy8742 561 ----MFTQPLMYKIIKKT------------PPALDKYANKLIEEKVVTEEQVKDVKEKYDK---ICEEAYVNARKETHIK 621 (968)
Q Consensus 561 ----~yt~p~~y~~i~~~------------~dpi~~y~~~Li~~Gv~t~ee~~~i~~e~~~---~l~~a~~~A~~~~~~~ 621 (968)
.--.+++++..++. .+++..|++ ..++|...++++++..+++++ ++.+.++...+.+.|
T Consensus 281 ~~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~-~~~~g~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p- 358 (700)
T 3rim_A 281 KAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRG-LVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLP- 358 (700)
T ss_dssp HHHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCC-
T ss_pred cccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHhhChHHHHHHHHHhccCCC-
Confidence 12245556544321 133445544 244443223333333332222 122233333222211
Q ss_pred CccccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhh
Q psy8742 622 YKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAF 701 (968)
Q Consensus 622 ~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~ 701 (968)
. .|.... |. ...+ . +..+.... +.++|
T Consensus 359 -~-----~~~~~~-p~-----~~~~-~------------------~~~atr~a--------------------~~~~L-- 385 (700)
T 3rim_A 359 -D-----GWDADL-PH-----WEPG-S------------------KALATRAA--------------------SGAVL-- 385 (700)
T ss_dssp -T-----TTTSSC-CC-----CCTT-S------------------SCEEHHHH--------------------HHHHH--
T ss_pred -c-----chhhhc-cc-----cccc-c------------------cchHHHHH--------------------HHHHH--
Confidence 1 132110 00 0000 0 00111011 11111
Q ss_pred hhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCC-----CC----cEeecCCcchHHHHHHhhhc
Q psy8742 702 GSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQ-----AP----YTVCNSSLSEFGVLGFELGF 772 (968)
Q Consensus 702 ~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~-----g~----~~v~nspLsE~avlG~~~G~ 772 (968)
..|+.+..+|.+.++|+..++ +..+..+..+.++| |+ .|++|++|+|.+++|++.|+
T Consensus 386 ~~l~~~~p~vv~~saDl~~s~--------------~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~Gl 451 (700)
T 3rim_A 386 SALGPKLPELWGGSADLAGSN--------------NTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILSGI 451 (700)
T ss_dssp HHHTTTCTTEEEEESSCHHHH--------------TCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHHHHHHHHH
T ss_pred HHHHhhCCCEEEEeCCccCCC--------------CcccccchhhcccccccccCCcccCCceeecCccHHHHHHHHHHH
Confidence 234456778889999997633 11124466677766 35 59999999999999999999
Q ss_pred ccC-CCCcccccc--chhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cC-CC-CCcccCCChHHHHhcccCCCC
Q psy8742 773 SMT-NPNTLVCWE--AQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GL-EG-MGPEHSSARLERFLQMSDDEP 846 (968)
Q Consensus 773 s~~-g~~~l~iWE--~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~-~g-~GpeHSs~r~er~lql~~~~~ 846 (968)
|+. |.+|++ + ++|.||...+ +-..+ .+..|++++++| |+ .| -||.|-+---..+|
T Consensus 452 A~~gG~~Pv~--~tF~~F~d~~~~~------ir~~a----l~~lpvv~v~thdg~gvG~dG~THq~ied~a~l------- 512 (700)
T 3rim_A 452 VLHGPTRAYG--GTFLQFSDYMRPA------VRLAA----LMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSAL------- 512 (700)
T ss_dssp HHHSSCEEEE--EEEGGGGGGGHHH------HHHHH----HHTCCCEEEEECCSGGGCTTCTTTSCSSHHHHH-------
T ss_pred HHcCCCEEEE--EecHHHHHHHHHH------HHHhc----CCCCCEEEEEeCCCcccCCCCCccCChhHHHHH-------
Confidence 999 999999 8 6666666543 22222 125799999987 33 34 58998443344888
Q ss_pred cccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCC-CcEEEEecccCcCCCCCCCCcccccCCCceEEe
Q psy8742 847 IRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFR-KPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRV 925 (968)
Q Consensus 847 ~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r-~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~v 925 (968)
.++| ||+|+.|++|.++.++|+.+++.+-+ .|++|..|+.-+..-.. .+...+.-|. .|
T Consensus 513 r~iP----------------nl~V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~~~~-~~~~~~~~G~---~v 572 (700)
T 3rim_A 513 RAIP----------------RLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGVPVLDG-TDAEGVARGG---YV 572 (700)
T ss_dssp HTST----------------TCEEECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECCCTT-CCHHHHHHSC---EE
T ss_pred hcCC----------------CCEEEeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCCcCc-ccccccCCCc---EE
Confidence 8999 99999999999999999999998711 39999998765432111 1122333343 35
Q ss_pred ccCCCccccCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 926 IPDDSISERKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 926 i~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
+.+.+. .....+-+-+|+++|...+..+++.++
T Consensus 573 lr~g~~-~~~~~~~dvtiia~G~~v~~al~Aa~~ 605 (700)
T 3rim_A 573 LSDAGG-LQPGEEPDVILIATGSEVQLAVAAQTL 605 (700)
T ss_dssp EECCSC-CCTTCCCSEEEEECGGGHHHHHHHHHH
T ss_pred EecCCc-cccCCCCCEEEEEechHHHHHHHHHHH
Confidence 554310 000112246899999988877776654
No 15
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=4.6e-33 Score=335.42 Aligned_cols=415 Identities=15% Similarity=0.100 Sum_probs=274.5
Q ss_pred CCCCccccCchhhhHhhHhHhhc---C--CCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcC
Q psy8742 414 NPSHLEAVDPVVQGKTRAEQFYR---G--DGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNN 485 (968)
Q Consensus 414 NpShLea~~PvA~G~A~A~q~~~---~--~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNN 485 (968)
..++||.+.|.|+|+|+|.++.. + +....+..++|++|||+ ..+|+++|+||+| +|| -+|+||.||
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~-~~eG~~~Eal~~A~~~~L~-----~li~i~d~N 187 (673)
T 1r9j_A 114 TTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGC-LMEGVCQEALSLAGHLALE-----KLIVIYDSN 187 (673)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH-HHSHHHHHHHHHHHHHTCT-----TEEEEEEEC
T ss_pred ccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcch-hcccHHHHHHHHHHHhCCC-----cEEEEEECC
Confidence 34789999999999999998642 0 00114578999999999 5899999999999 887 499999999
Q ss_pred CcccccCCCcccccccHhHhhhhcCCcEE-EEeC-CCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCC---
Q psy8742 486 QIGFTTDPRFSRSSSYCTDVARVVNAPIF-HVNS-DDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEP--- 560 (968)
Q Consensus 486 qig~TT~~~~~rss~~~td~Ak~~giP~~-hVDG-nD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp--- 560 (968)
+|+++++...+. ...+.+++++||++++ .||| +|+++++.|++.|.+ ..++|+||++.|+|.+||...|..
T Consensus 188 ~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H 263 (673)
T 1r9j_A 188 YISIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTIGFGSSKQGTEKVH 263 (673)
T ss_dssp SBCSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTSTTTTSGGGT
T ss_pred CCccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEecccccccccCCCcccc
Confidence 999999877765 5788999999999999 9999 999999999998875 367899999999999999966653
Q ss_pred -CCCCHHHHHHHHhCCC---------HH---HHHHHHHHHccCCCHHHHHHHHHHHHHH---HHHHHHHHhhccCCCCcc
Q psy8742 561 -MFTQPLMYKIIKKTPP---------AL---DKYANKLIEEKVVTEEQVKDVKEKYDKI---CEEAYVNARKETHIKYKD 624 (968)
Q Consensus 561 -~yt~p~~y~~i~~~~d---------pi---~~y~~~Li~~Gv~t~ee~~~i~~e~~~~---l~~a~~~A~~~~~~~~~~ 624 (968)
.+..+++++.+++.-. |- ..|+ .+.++|...++++++..+++.+. +.+.++.......| .
T Consensus 264 ~~~~~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~-~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~~~~~~~~~p--~- 339 (673)
T 1r9j_A 264 GAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFR-MHIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELP--S- 339 (673)
T ss_dssp SSCCCHHHHHHHHHHTTSCSSCCSCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCC--T-
T ss_pred cCCCCHHHHHHHHHhcCCCCcccccCCHHHHHHHH-HHHhhchHHHHHHHHHHHHHHhhChhHHHHHHHHhcCCCC--c-
Confidence 2466778877764211 11 1111 12223322222222222222111 11111111111111 1
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhh
Q psy8742 625 WLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSL 704 (968)
Q Consensus 625 ~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sL 704 (968)
.|.... |. . +-... --.++...|. .+
T Consensus 340 ----~~~~~~-p~-----~--~~~~a----------------~r~a~~~~L~--------------------------~l 365 (673)
T 1r9j_A 340 ----GWEAKL-PT-----N--SSAIA----------------TRKASENCLA--------------------------VL 365 (673)
T ss_dssp ----TTGGGS-CC-----C--CSCEE----------------HHHHHHHHHH--------------------------HH
T ss_pred ----hhhhhc-cc-----c--ccchH----------------HHHHHHHHHH--------------------------HH
Confidence 121100 00 0 00000 0011112222 33
Q ss_pred hhcCCcEEEeccccCCCccccccceeeeeccCCceee-c--CCCCCC-CCCCcEeecCCcchHHHHHHhhhcccC-CCCc
Q psy8742 705 LKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYR-P--LNNLYP-DQAPYTVCNSSLSEFGVLGFELGFSMT-NPNT 779 (968)
Q Consensus 705 l~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~-~--~~~l~~-~~g~~~v~nspLsE~avlG~~~G~s~~-g~~~ 779 (968)
+.+..+|++.|+|+...+ +.+. - +..+.+ +| +.|++|++|+|.+++|++.|+|+. |.+|
T Consensus 366 ~~~~p~vv~~~aDl~~s~---------------~~~~~~~~~~~f~~~~~-~~R~id~GIaE~~~~~~a~GlA~~GG~~P 429 (673)
T 1r9j_A 366 FPAIPALMGGSADLTPSN---------------LTRPASANLVDFSSSSK-EGRYIRFGVREHAMCAILNGLDAHDGIIP 429 (673)
T ss_dssp HHHCTTEEEEESSCHHHH---------------TCSCGGGCCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred HhhCCCEEEEeccccccc---------------cccccCcccccccccCC-CCCeEecCccHHHHHHHHHHHHhcCCCEE
Confidence 445667889999997521 1221 1 344665 78 889999999999999999999999 5999
Q ss_pred cccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cC-CC-CCcccCCChHH--HHhcccCCCCcccccccc
Q psy8742 780 LVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GL-EG-MGPEHSSARLE--RFLQMSDDEPIRVILVLV 854 (968)
Q Consensus 780 l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~-~g-~GpeHSs~r~e--r~lql~~~~~~~~p~~~~ 854 (968)
++ +. |..|+.-+ .||+...+- ...|+|+++.| |. .| -||.| ++ +| .+| .++|
T Consensus 430 ~~--~~-~~~F~~~~---~~~ir~~a~----~~~pvv~~~t~~g~g~G~dG~tH-q~-~edla~l-------r~iP---- 486 (673)
T 1r9j_A 430 FG--GT-FLNFIGYA---LGAVRLAAI----SHHRVIYVATHDSIGVGEDGPTH-QP-VELVAAL-------RAMP---- 486 (673)
T ss_dssp EE--EE-EGGGGGGG---HHHHHHHHH----HTCCCEEEEECCSGGGCTTCTTT-CC-SSHHHHH-------HHST----
T ss_pred EE--Ee-hHHHHHHH---HHHHHHHHh----cCCCEEEEEECCccCcCCCCccc-CC-HHHHHHH-------cCCC----
Confidence 99 76 55554333 677655442 25799999866 43 34 78999 66 77 778 7899
Q ss_pred hhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhc-CCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccc
Q psy8742 855 PIEFAVRQLHDINWIIANCTTPANLFHILRRQIAL-PFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISE 933 (968)
Q Consensus 855 ~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~-~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~ 933 (968)
||+|+.|+++.++.++|+.++++ + .|++|..|+.-+-.-.. ...+.+.-|. .|+.+.
T Consensus 487 ------------~l~V~~Pad~~e~~~~l~~a~~~~~--~Pv~i~~~r~~~~~~~~-~~~~~~~~Ga---~vl~~g---- 544 (673)
T 1r9j_A 487 ------------NLQVIRPSDQTETSGAWAVALSSIH--TPTVLCLSRQNTEPQSG-SSIEGVRHGA---YSVVDV---- 544 (673)
T ss_dssp ------------TCEEECCSSHHHHHHHHHHHHHCTT--CCEEEECCSSEECCCTT-CCHHHHHTSC---EEEECC----
T ss_pred ------------CCEEEeCCCHHHHHHHHHHHHHhCC--CeEEEEEcCCCCCCCCC-cccccccCCC---EEEeeC----
Confidence 99999999999999999999997 7 99999999875421110 1111232332 244331
Q ss_pred cCCCCccEEEEecchhHHHHHHHHHhc
Q psy8742 934 RKADSVEKLVFCSGKVYYDLIKARNDN 960 (968)
Q Consensus 934 ~~~~~v~rvilcsGkvyydl~~~r~~~ 960 (968)
++-+-+|+++|......+++.++.
T Consensus 545 ---~~~dv~lia~G~~v~~al~Aa~~L 568 (673)
T 1r9j_A 545 ---PDLQLVIVASGSEVSLAVDAAKAL 568 (673)
T ss_dssp ---TTCSEEEEECGGGHHHHHHHHHHH
T ss_pred ---CCCCEEEEEechhHHHHHHHHHHH
Confidence 113458999999988888777654
No 16
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=1.9e-31 Score=321.61 Aligned_cols=420 Identities=14% Similarity=0.143 Sum_probs=267.1
Q ss_pred CCCCccccCchhhhHhhHhHhhcC--C---CCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcC
Q psy8742 414 NPSHLEAVDPVVQGKTRAEQFYRG--D---GEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNN 485 (968)
Q Consensus 414 NpShLea~~PvA~G~A~A~q~~~~--~---~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNN 485 (968)
..+|||.+.|.|+|+|+|.++... + .+..+..++|++|||+ ..+|.++|+||+| +|| .+|+||.||
T Consensus 125 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~-~~eG~~~Eal~~A~~~~L~-----~li~i~~nN 198 (675)
T 1itz_A 125 TTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGC-QMEGIANEACSLAGHWGLG-----KLIAFYDDN 198 (675)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH-HHSHHHHHHHHHHHHTTCT-----TEEEEEEEC
T ss_pred CCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhH-hchhHHHHHHHHHHHhCCC-----cEEEEEECC
Confidence 347899999999999999986420 0 0114568999999999 5799999999999 774 399999999
Q ss_pred CcccccCCCcccccccHhHhhhhcCCcEE-EEeCC-CHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCC-C-
Q psy8742 486 QIGFTTDPRFSRSSSYCTDVARVVNAPIF-HVNSD-DPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEP-M- 561 (968)
Q Consensus 486 qig~TT~~~~~rss~~~td~Ak~~giP~~-hVDGn-D~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp-~- 561 (968)
+|+++++..... ...+.+++++||++++ .|||+ |+++++.|.+.|.+ ..++|+||++.|+|.+||+...++ .
T Consensus 199 ~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~ 274 (675)
T 1itz_A 199 HISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIKVTTTIGFGSPNKANSYSV 274 (675)
T ss_dssp SEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGG
T ss_pred CccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHH---CCCCeEEEEEeeecccCcccccCcccc
Confidence 999998776654 5778899999999999 99999 99999999998865 357899999999999999864433 2
Q ss_pred ---CCCHHHHHHHHhC----CCHHH-------HHHHHHHHccCCCHHHHHHHHHHHHH---HHHHHHHHHhhccCCCCcc
Q psy8742 562 ---FTQPLMYKIIKKT----PPALD-------KYANKLIEEKVVTEEQVKDVKEKYDK---ICEEAYVNARKETHIKYKD 624 (968)
Q Consensus 562 ---yt~p~~y~~i~~~----~dpi~-------~y~~~Li~~Gv~t~ee~~~i~~e~~~---~l~~a~~~A~~~~~~~~~~ 624 (968)
...+++++.+++. .+|.. .|++. +++|.-.+.++.+.-.++.. ++...++...+...| .
T Consensus 275 H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p--~- 350 (675)
T 1itz_A 275 HGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRH-TPEGAALEADWNAKFAEYEKKYADDAATLKSIITGELP--T- 350 (675)
T ss_dssp TSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCCCC--T-
T ss_pred cCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHH-HhhhhhhHHHHHHHHHHhhhhChHHHHHHHHHhcccCC--c-
Confidence 3456666665432 01111 11110 01110001111111111111 111122222222211 1
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhh
Q psy8742 625 WLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSL 704 (968)
Q Consensus 625 ~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sL 704 (968)
.|.... |... ..+..+. --.++...|. .+
T Consensus 351 ----~~~~~~-~~~~--~~~~~~a------------------~r~a~~~~L~--------------------------~i 379 (675)
T 1itz_A 351 ----GWVDAL-PKYT--PESPGDA------------------TRNLSQQCLN--------------------------AL 379 (675)
T ss_dssp ----TGGGGS-CCCC--TTSCCBC------------------HHHHHHHHHH--------------------------HH
T ss_pred ----hhhhhh-hhhc--cCCcchH------------------HHHHHHHHHH--------------------------HH
Confidence 122111 0000 0000000 0011122222 23
Q ss_pred hhcCCcEEEeccccCCCccccccceeeeeccCCcee-ecCCCCCC-CCCCcEeecCCcchHHHHHHhhhcccCC--CCcc
Q psy8742 705 LKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATY-RPLNNLYP-DQAPYTVCNSSLSEFGVLGFELGFSMTN--PNTL 780 (968)
Q Consensus 705 l~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~-~~~~~l~~-~~g~~~v~nspLsE~avlG~~~G~s~~g--~~~l 780 (968)
+....+|++.|+|+...+. .+ .-+..+.+ +| +.|++|++|+|.+++|++.|+|+.| .+|+
T Consensus 380 ~~~~p~v~~~~aDl~~s~~---------------~~~~g~~~f~~~~~-~~R~id~gIaE~~~v~~a~GlA~~G~~~~P~ 443 (675)
T 1itz_A 380 ANVVPGLIGGSADLASSNM---------------TLLKMFGDFQKDTA-EERNVRFGVREHGMGAICNGIALHSPGFVPY 443 (675)
T ss_dssp HHHCTTEEEEESSCHHHHT---------------CCCTTCCBCCTTCT-TCCBCCCCSCHHHHHHHHHHHHTTCTTCEEE
T ss_pred HHhCCCEEEEecccccccc---------------ccccccccccccCC-CCCeEeecccHHHHHHHHHHHHhcCCCCEEE
Confidence 3345667799999975321 11 12334665 78 7899999999999999999999999 9999
Q ss_pred ccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cC-CC-CCcccCCChHH--HHhcccCCCCcccccccch
Q psy8742 781 VCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GL-EG-MGPEHSSARLE--RFLQMSDDEPIRVILVLVP 855 (968)
Q Consensus 781 ~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~-~g-~GpeHSs~r~e--r~lql~~~~~~~~p~~~~~ 855 (968)
+ +. |.+|+.-+ .+|+...+ ....|+|+++.| |. .| -||.| |+ +| .+| .++|
T Consensus 444 ~--~t-~~~F~~~~---~~~ir~~a----~~~lpvv~~~t~~g~g~G~dG~tH-q~-~edla~l-------r~iP----- 499 (675)
T 1itz_A 444 C--AT-FFVFTDYM---RGAMRISA----LSEAGVIYVMTHDSIGLGEDGPTH-QP-IEHLVSF-------RAMP----- 499 (675)
T ss_dssp E--EE-EGGGHHHH---HHHHHHHH----HHTCCCEEEEECCSGGGCTTCTTT-CC-SSHHHHH-------HSSS-----
T ss_pred E--EE-HHHHHHHH---HHHHHHHH----hcCCCEEEEEECCccccCCCCCCc-Cc-HHHHHHh-------ccCC-----
Confidence 9 66 55554333 56654433 235799999866 33 24 78999 66 78 777 7899
Q ss_pred hhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhc-CCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCcccc
Q psy8742 856 IEFAVRQLHDINWIIANCTTPANLFHILRRQIAL-PFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISER 934 (968)
Q Consensus 856 ~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~-~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~ 934 (968)
||+|+.|+++.++.++|+.++++ + .|++|..|+.-+-.-.. ...+.+.-|. .|+.+.+
T Consensus 500 -----------~l~V~~Pad~~e~~~~l~~a~~~~~--~Pv~i~~~r~~~p~~~~-~~~~~~~~Ga---~vl~~~~---- 558 (675)
T 1itz_A 500 -----------NILMLRPADGNETAGAYKVAVLNRK--RPSILALSRQKLPHLPG-TSIEGVEKGG---YTISDNS---- 558 (675)
T ss_dssp -----------SCEEECCCSHHHHHHHHHHHHHCTT--SCEEEEECSSCBCCCTT-CCHHHHTTSS---EEEEECC----
T ss_pred -----------CeEEEECCCHHHHHHHHHHHHHhCC--CcEEEEecCCCCCCCCC-ccccccccCC---EEEeccc----
Confidence 99999999999999999999997 7 99999999864421110 1111232332 2333210
Q ss_pred CCCCccEEEEecchhHHHHHHHHHh
Q psy8742 935 KADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 935 ~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
..++-+-+|+++|......+++.++
T Consensus 559 ~G~~~dv~iva~G~~v~~al~Aa~~ 583 (675)
T 1itz_A 559 TGNKPDLIVMGTGSELEIAAKAADE 583 (675)
T ss_dssp STTCCSEEEEECGGGHHHHHHHHHH
T ss_pred CCCCCCEEEEEECHHHHHHHHHHHH
Confidence 0111345899999998877766653
No 17
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=1.2e-32 Score=331.90 Aligned_cols=425 Identities=14% Similarity=0.106 Sum_probs=279.5
Q ss_pred cCCCCccccCchhhhHhhHhHhhc---CC--CCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEc
Q psy8742 413 ANPSHLEAVDPVVQGKTRAEQFYR---GD--GEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVN 484 (968)
Q Consensus 413 ~NpShLea~~PvA~G~A~A~q~~~---~~--~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeN 484 (968)
...++||.+.|.|+|+|+|.++.. +. ....+..++|++|||+ ..+|.++|+||+| +|| -+|+||.|
T Consensus 111 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~-~~eG~~~Eal~~A~~~~L~-----~li~i~~n 184 (669)
T 2r8o_A 111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGC-MMEGISHEVCSLAGTLKLG-----KLIAFYDD 184 (669)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH-HHSHHHHHHHHHHHHTTCT-----TEEEEEEE
T ss_pred cccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhH-hcchHHHHHHHHHHHcCCC-----cEEEEEEC
Confidence 344789999999999999998642 00 0113568999999999 5799999999999 777 49999999
Q ss_pred CCcccccCCCcccccccHhHhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCC-CCCC--
Q psy8742 485 NQIGFTTDPRFSRSSSYCTDVARVVNAPIF-HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNE-IDEP-- 560 (968)
Q Consensus 485 Nqig~TT~~~~~rss~~~td~Ak~~giP~~-hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne-~Ddp-- 560 (968)
|+|+++++...+. +..+.+++++||++++ .|||+|+++++.|++.|.+ ..++|+||++.|+|..||+. .|++
T Consensus 185 N~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~ 260 (669)
T 2r8o_A 185 NGISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDS 260 (669)
T ss_dssp CSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGG
T ss_pred CCcEecccccccc-CccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCCcCCCCcc
Confidence 9999998766554 4678899999999999 9999999999999999975 35789999999999999983 4543
Q ss_pred --CCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHH---------HHHHHHHHHHHHHHHHhhccCCCCccccCCC
Q psy8742 561 --MFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKD---------VKEKYDKICEEAYVNARKETHIKYKDWLDSP 629 (968)
Q Consensus 561 --~yt~p~~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~~~---------i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~ 629 (968)
.|+.+++++.|++.. ... +... .+.++..+. .+.++.+.+.+ + ....| ...
T Consensus 261 H~~~~~~ee~~~~~~~~-~~~-~~~f-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~p--~~~------ 322 (669)
T 2r8o_A 261 HGAPLGDAEIALTREQL-GWK-YAPF-----EIPSEIYAQWDAKEAGQAKESAWNEKFAA-Y--AKAYP--QEA------ 322 (669)
T ss_dssp TSSCCCHHHHHHHHHHH-TCC-CCTT-----CCCHHHHHHHCCHHHHHHHHHHHHHHHHH-H--HHHCH--HHH------
T ss_pred cCCCCCHHHHHHHHHHc-CCC-cccc-----cCCHHHHHHHHHHhhhhHHHHHHHHHHHH-H--hhhCh--HHH------
Confidence 589999998887521 110 1101 111111111 11112111111 0 00000 000
Q ss_pred CCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhh-hchh--hhhhhHhhhhhhhh
Q psy8742 630 WSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVES-RTVD--WALGEAMAFGSLLK 706 (968)
Q Consensus 630 w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~-~~id--wa~aE~LA~~sLl~ 706 (968)
..+..+- -..+| +.+. ..+.+.. .. ..+. .++. =++.+ +...|+.
T Consensus 323 --------------------~~~~~~~--~~~lp---~~~~--~~~~~~~-~~--~~~~~~~~~~r~a~~~--~L~~l~~ 370 (669)
T 2r8o_A 323 --------------------AEFTRRM--KGEMP---SDFD--AKAKEFI-AK--LQANPAKIASRKASQN--AIEAFGP 370 (669)
T ss_dssp --------------------HHHHHHH--HTCCC---TTHH--HHHHHHH-HH--HHHSCCCEEHHHHHHH--HHHHHTT
T ss_pred --------------------HHHHHHh--cccCC---hhhh--hhhHHHh-hh--hcCCCccHHHHHHHHH--HHHHHHh
Confidence 0010000 01233 2221 1111100 00 0000 1111 11122 2335666
Q ss_pred cCCcEEEeccccCCCccccccceeeeeccCCcee-ecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccC-CCCcccccc
Q psy8742 707 EGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATY-RPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMT-NPNTLVCWE 784 (968)
Q Consensus 707 eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~-~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~-g~~~l~iWE 784 (968)
...+|++.++|+..-+ +++ +.+..+.++| +.|++|++|+|.+++|++.|+|+. |.+|++
T Consensus 371 ~~p~v~~~~aDl~~s~---------------~~~~~~~~~f~~~~-p~R~id~GIaE~~~v~~a~GlA~~gG~~P~~--- 431 (669)
T 2r8o_A 371 LLPEFLGGSADLAPSN---------------LTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGISLHGGFLPYT--- 431 (669)
T ss_dssp TCTTEEEEESSCHHHH---------------TCCCTTCCBTTTCT-TCSEEECCSCHHHHHHHHHHHHHHSSCEEEE---
T ss_pred hCCCeEEecCcccccc---------------cccccccccccccC-CCCeeecchhHHHHHHHHHHHHHcCCCeEEE---
Confidence 8889999999997521 122 4566788888 899999999999999999999999 899999
Q ss_pred chhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cC-CC-CCcccCCChHH--HHhcccCCCCcccccccchhhhh
Q psy8742 785 AQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GL-EG-MGPEHSSARLE--RFLQMSDDEPIRVILVLVPIEFA 859 (968)
Q Consensus 785 ~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~-~g-~GpeHSs~r~e--r~lql~~~~~~~~p~~~~~~~~~ 859 (968)
++|..|+.-+ .||+...+- ...|+|++++| |. .| -||.| ++ +| .+| .++|
T Consensus 432 ~tf~~F~~~~---~~~ir~~a~----~~lpvv~~~t~~g~~~G~dG~tH-q~-~edla~l-------r~iP--------- 486 (669)
T 2r8o_A 432 STFLMFVEYA---RNAVRMAAL----MKQRQVMVYTHDSIGLGEDGPTH-QP-VEQVASL-------RVTP--------- 486 (669)
T ss_dssp EEEGGGGGTT---HHHHHHHHH----TTCCCEEEEECCSGGGCTTCTTT-CC-SSHHHHH-------HTST---------
T ss_pred eehHHHHHHH---HHHHHHHHh----cCCCEEEEEeCCCcCcCCCCCcc-CC-HHHHHHh-------cCCC---------
Confidence 4677776544 677655431 35899999987 33 24 68999 55 77 667 7899
Q ss_pred hhcccCCCeEEEecCCHhHHHHHHHHHHhc-CCCCcEEEEecccCcCCCCCCC-CcccccCCCceEEeccCCCccccCCC
Q psy8742 860 VRQLHDINWIIANCTTPANLFHILRRQIAL-PFRKPLVLMTPKSLLRHPEAKS-SFDDMIEGTEFLRVIPDDSISERKAD 937 (968)
Q Consensus 860 ~~~~~~~n~~V~~pstpa~~~hlLr~q~~~-~~r~Pli~~~pK~Llr~~~a~s-~l~e~~~g~~F~~vi~d~~~~~~~~~ 937 (968)
||+|+.|+++.+++++|+.+++. + .|++|..||..+..-.... ..+.+.-|. .|+.+.. .
T Consensus 487 -------~l~V~~Pad~~E~~~~l~~a~~~~~--~Pv~i~~~r~~~~~~~~~~~~~~~~~~G~---~vl~~~~-----g- 548 (669)
T 2r8o_A 487 -------NMSTWRPCDQVESAVAWKYGVERQD--GPTALILSRQNLAQQERTEEQLANIARGG---YVLKDCA-----G- 548 (669)
T ss_dssp -------TCEEECCSSHHHHHHHHHHHHHCSS--SCEEEECCSSEECCCCCCHHHHHHGGGSC---EEEECCS-----S-
T ss_pred -------CCEEEecCCHHHHHHHHHHHHHhCC--CcEEEEeCCCCCCCCCCccchhhhccCCC---EEEeccC-----C-
Confidence 99999999999999999999997 7 9999999998764211100 001132232 2343310 1
Q ss_pred CccEEEEecchhHHHHHHHHHh
Q psy8742 938 SVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 938 ~v~rvilcsGkvyydl~~~r~~ 959 (968)
+-+-+|+++|......+++.++
T Consensus 549 ~~dv~iva~G~~v~~al~Aa~~ 570 (669)
T 2r8o_A 549 QPELIFIATGSEVELAVAAYEK 570 (669)
T ss_dssp SCSEEEEECGGGHHHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHHH
Confidence 1245899999998887776653
No 18
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=1.4e-32 Score=330.07 Aligned_cols=425 Identities=14% Similarity=0.104 Sum_probs=265.2
Q ss_pred CCCCccccCchhhhHhhHhHhhcC---C--CCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcC
Q psy8742 414 NPSHLEAVDPVVQGKTRAEQFYRG---D--GEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNN 485 (968)
Q Consensus 414 NpShLea~~PvA~G~A~A~q~~~~---~--~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNN 485 (968)
..+|||.+.|.|+|+|+|.++... . .+-.+..++|++|||+ ..+|+++|+||+| +|| -+|+||.||
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~-l~eG~~~Eal~~A~~~~L~-----~livi~dnN 187 (663)
T 3kom_A 114 TTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGC-LMEGVSHEACSLAGTLGLN-----KLVAFWDDN 187 (663)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHH-HHSHHHHHHHHHHHHHTCT-----TEEEEEEEC
T ss_pred CCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchh-hhhchHHHHHHHHHHhCCC-----eEEEEEECC
Confidence 447899999999999999987421 0 0111567999999999 4799999999999 887 389999999
Q ss_pred CcccccCCCcccccccHhHhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCC-CC-
Q psy8742 486 QIGFTTDPRFSRSSSYCTDVARVVNAPIF-HVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEP-MF- 562 (968)
Q Consensus 486 qig~TT~~~~~rss~~~td~Ak~~giP~~-hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp-~y- 562 (968)
+|+++++..... ...+.+++++||++++ .|||+|+++++.|.+.|.+ ..++|+||++.|+|-+||+...++ .+
T Consensus 188 ~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~e~~~~~H 263 (663)
T 3kom_A 188 NISIDGDTKGWF-SDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHS---QQQKPTLICCKTVIGFGSPEKAGTASVH 263 (663)
T ss_dssp C-----CGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CSSSCEEEEEECCTTTTCTTTTTCSSTT
T ss_pred Ccccccchhhhc-chhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHh---cCCCCEEEEEecccccccCCCCCCcccc
Confidence 999998876543 4678999999999999 9999999999998877753 257899999999999999865332 21
Q ss_pred ---CCHHHHHHHHh----CCCHHHHHHHHHHHccCCCHHHHHHHHH-----HHHHHHHHHHHHHhhccCCCCccccCCCC
Q psy8742 563 ---TQPLMYKIIKK----TPPALDKYANKLIEEKVVTEEQVKDVKE-----KYDKICEEAYVNARKETHIKYKDWLDSPW 630 (968)
Q Consensus 563 ---t~p~~y~~i~~----~~dpi~~y~~~Li~~Gv~t~ee~~~i~~-----e~~~~l~~a~~~A~~~~~~~~~~~~~~~w 630 (968)
-.+++++..++ +.+|.. +.++..+.+++ ...+..++.+....+. | ..
T Consensus 264 g~~l~~e~~~~~~~~l~~~~~pf~-----------~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~--p-~~------- 322 (663)
T 3kom_A 264 GSPLSDQERASAAKELNWDYQAFE-----------IPQDVYKYWDAREKGQALEANWQGQRNLFKDS--P-KF------- 322 (663)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCTTC-----------CCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTS--T-TH-------
T ss_pred CCCCCHHHHHHHHHHcCCCCCCcc-----------CChhHHHHHHHHhhcchhhHHHHHHHHHhhcc--h-HH-------
Confidence 23555554322 122311 11111111110 0111111112111111 0 00
Q ss_pred CCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhh--HHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhhhhcC
Q psy8742 631 SGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFV--IHKGIERILKARLQMVESRTVDWALGEAMAFGSLLKEG 708 (968)
Q Consensus 631 ~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~--~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sLl~eg 708 (968)
.+.-+.+. ..+| +++. +-+.+.+..+..+++ ..-=|..++ ...++...
T Consensus 323 ------------------~~~~~~~~---~~~p---~~~~~~~~~~~~~~~~~~~~~----a~r~a~~~a--L~~~~~~~ 372 (663)
T 3kom_A 323 ------------------DEFERVLS---KELP---VGLESAINDYIASQLSNPVKV----ATRKASQMV--LEVLCKNM 372 (663)
T ss_dssp ------------------HHHHHHHH---TCCC---TTHHHHHHHHHHHHHHSCCCE----EHHHHHHHH--HHHHHHHC
T ss_pred ------------------HHHHHHhc---cCCC---cchhhhhhhhhhhhhccCcch----hHHHHHHHH--HHHHHhhC
Confidence 00000010 1122 2111 000111110000000 001111222 23455577
Q ss_pred CcEEEeccccCCCccccccceeeeeccCCceeecCCCCC-CCCCCcEeecCCcchHHHHHHhhhcccC-CCCccccccch
Q psy8742 709 IHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLY-PDQAPYTVCNSSLSEFGVLGFELGFSMT-NPNTLVCWEAQ 786 (968)
Q Consensus 709 ~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~-~~~g~~~v~nspLsE~avlG~~~G~s~~-g~~~l~iWE~q 786 (968)
.+|.+.|+|+..-+ +..|..+.++. ++| +.|++|++|+|.+++|++.|+|+. |.+|++ +.
T Consensus 373 p~vv~~~aDl~~s~--------------~~~~~~~~~f~~~~~-p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~--~t- 434 (663)
T 3kom_A 373 PEMFGGSADLTGSN--------------NTNWSGSVWLNNTQE-GANYLSYGVREFGMAAIMNGLSLYGGIKPYG--GT- 434 (663)
T ss_dssp TTEEEEECCC--CC--------------SCCCTTCCBTTTCST-TCCEEECCSCHHHHHHHHHHHHHHSSCEEEE--EE-
T ss_pred CCEEEEecccCCCC--------------CcccccccccccccC-CCCeEecCccHHHHHHHHHHHHHcCCCEEEE--Ee-
Confidence 88999999997522 23466778885 788 789999999999999999999999 999999 87
Q ss_pred hhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cC-CC-CCcccCCChHHHHhcccCCCCcccccccchhhhhhhcc
Q psy8742 787 FGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GL-EG-MGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQL 863 (968)
Q Consensus 787 fgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~-~g-~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~ 863 (968)
|.+|+.-+ .||+-..+ ....|+|+++.| |+ .| .||.|.+---..+| .++|
T Consensus 435 f~~F~~~~---~~~ir~~a----~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~l-------r~iP------------- 487 (663)
T 3kom_A 435 FLVFSDYS---RNAIRMSA----LMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSL-------RLIP------------- 487 (663)
T ss_dssp EGGGHHHH---HHHHHHHH----HTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHH-------HTST-------------
T ss_pred hHHHHHHH---HHHHHHHH----hcCCCEEEEEeCCccccCCCCCCcCCHHHHHHH-------hcCC-------------
Confidence 88887655 78774433 236899999765 44 34 58988554355888 8999
Q ss_pred cCCCeEEEecCCHhHHHHHHHHHHh-cCCCCcEEEEecccCcCCCCCC-CCcccccCCCceEEeccCCCccccCCCCccE
Q psy8742 864 HDINWIIANCTTPANLFHILRRQIA-LPFRKPLVLMTPKSLLRHPEAK-SSFDDMIEGTEFLRVIPDDSISERKADSVEK 941 (968)
Q Consensus 864 ~~~n~~V~~pstpa~~~hlLr~q~~-~~~r~Pli~~~pK~Llr~~~a~-s~l~e~~~g~~F~~vi~d~~~~~~~~~~v~r 941 (968)
||+|+.|++|.+++++|+.+++ .+ +|++|..|+.-+-..... .....+..|. .|+-+. ...+ -
T Consensus 488 ---nl~V~~Pad~~e~~~~l~~A~~~~~--~Pv~ir~~r~~~p~~~~~~~~~~~~~~G~---~vl~~~-----~g~d--v 552 (663)
T 3kom_A 488 ---NLSVWRPADTIETMIAWKEAVKSKD--TPSVMVLTRQNLMPVVQTQHQVANIARGG---YLVKDN-----PDAK--L 552 (663)
T ss_dssp ---TCEEECCCSHHHHHHHHHHHHHCSS--CCEEEECCSSEECCCCCCHHHHHHHTTTC---EEEECC-----TTCS--C
T ss_pred ---CcEEEeeCCHHHHHHHHHHHHHhCC--CCEEEEccCccCCCcCccccchhcccCce---EEEEec-----CCCC--E
Confidence 9999999999999999999998 57 999999886432110000 0011232332 233331 0223 4
Q ss_pred EEEecchhHHHHHHHHHh
Q psy8742 942 LVFCSGKVYYDLIKARND 959 (968)
Q Consensus 942 vilcsGkvyydl~~~r~~ 959 (968)
+|+++|......+++.++
T Consensus 553 tiia~G~~v~~al~Aa~~ 570 (663)
T 3kom_A 553 TIVATGSEVELAVKVANE 570 (663)
T ss_dssp EEEECTTHHHHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHH
Confidence 899999988777666543
No 19
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.98 E-value=1.2e-31 Score=322.93 Aligned_cols=422 Identities=14% Similarity=0.134 Sum_probs=280.9
Q ss_pred CCCCccccCchhhhHhhHhHhhcC-----CCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcC
Q psy8742 414 NPSHLEAVDPVVQGKTRAEQFYRG-----DGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNN 485 (968)
Q Consensus 414 NpShLea~~PvA~G~A~A~q~~~~-----~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNN 485 (968)
..+|||.+.|.|+|+|+|.++... +....+..++|++|||+ ..+|.++|+||+| +|| -+|+|+.||
T Consensus 138 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~-l~eG~~~Eal~~A~~~~L~-----~livI~dnN 211 (690)
T 3m49_A 138 TTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGD-LMEGVSAEASSLAAHLQLG-----RLVVLYDSN 211 (690)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHH-HHSHHHHHHHHHHHHTTCT-----TEEEEEEEC
T ss_pred CCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchh-hhhccHHHHHHHHHHhCCC-----eEEEEEECC
Confidence 447899999999999999986421 00112567999999999 5799999999999 786 389999999
Q ss_pred CcccccCCCcccccccHhHhhhhcCCcEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCC-CC-
Q psy8742 486 QIGFTTDPRFSRSSSYCTDVARVVNAPIFHV-NSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEP-MF- 562 (968)
Q Consensus 486 qig~TT~~~~~rss~~~td~Ak~~giP~~hV-DGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp-~y- 562 (968)
+|+++++.... ....+.+++++||++++.| ||+|++++..|.+.|.+ ..++|+||++.|+|-+||....++ .+
T Consensus 212 ~~~i~~~~~~~-~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~---~~~~P~lI~v~T~kG~G~~~~~~~~~~H 287 (690)
T 3m49_A 212 DISLDGDLNRS-FSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKA---DEKRPTLIEVRTTIGFGSPNKSGKSASH 287 (690)
T ss_dssp SBCSSSBGGGT-CCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGT
T ss_pred Ceecccchhhc-cchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHh---cCCCCEEEEEEeecccccCcccCccccc
Confidence 99999887654 3467899999999999999 99999999987766642 268999999999999999744333 21
Q ss_pred ---CCHHHHHHHHhC----CC--------HHHHHHHHHHHccCCCHHHHHHHHHHHHH---HHHHHHHHHhhccCCCCcc
Q psy8742 563 ---TQPLMYKIIKKT----PP--------ALDKYANKLIEEKVVTEEQVKDVKEKYDK---ICEEAYVNARKETHIKYKD 624 (968)
Q Consensus 563 ---t~p~~y~~i~~~----~d--------pi~~y~~~Li~~Gv~t~ee~~~i~~e~~~---~l~~a~~~A~~~~~~~~~~ 624 (968)
-.+++++..++. .+ +...|++.+.++|.-.++++.++-.++.. ++.+.++...+.+.| ..
T Consensus 288 g~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~lp--~~ 365 (690)
T 3m49_A 288 GSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLP--EG 365 (690)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCC--TT
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHHHhcccCc--hh
Confidence 234555544321 11 22344443444443333444444444433 233333333322211 11
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhh
Q psy8742 625 WLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSL 704 (968)
Q Consensus 625 ~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sL 704 (968)
|..-. |. ...+-.... -.+....|.+ +
T Consensus 366 -----~~~~~-~~-----~~~~~~~a~----------------R~a~g~~L~~--------------------------~ 392 (690)
T 3m49_A 366 -----WEQNL-PT-----YELGSKAAT----------------RNSSGAVINA--------------------------I 392 (690)
T ss_dssp -----GGGGC-CC-----CCTTCEEEH----------------HHHHHHHHHH--------------------------H
T ss_pred -----hhhhc-cc-----cccccchHH----------------HHHHHHHHHH--------------------------H
Confidence 21100 00 000000000 0112222233 3
Q ss_pred hhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccC-CCCccccc
Q psy8742 705 LKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMT-NPNTLVCW 783 (968)
Q Consensus 705 l~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~-g~~~l~iW 783 (968)
+.+.++|.+.|+|++.-+ +..++.+.+|.+++++.|++|++|+|.+++|++.|+|+. |.+|++
T Consensus 393 ~~~~p~vv~~~aDl~~s~--------------~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A~GlA~~gG~~P~~-- 456 (690)
T 3m49_A 393 AESVPSFFGGSADLAGSN--------------KTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMNGIALHGGLKTYG-- 456 (690)
T ss_dssp HHHCTTEEEEESSCHHHH--------------TCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEE--
T ss_pred HhhCCCEEEEeCcccccC--------------CccccccccchhhcCCCceEEcCchHHHHHHHHHHHHHcCCCEEEE--
Confidence 334566779999997522 223577889999999999999999999999999999999 899999
Q ss_pred c--chhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccC--CC-CCcccCCChHHHHhcccCCCCcccccccchhhh
Q psy8742 784 E--AQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGL--EG-MGPEHSSARLERFLQMSDDEPIRVILVLVPIEF 858 (968)
Q Consensus 784 E--~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~--~g-~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~ 858 (968)
+ ++|.||...| | +. .+- ...|++++++|+. .| -||.|.+---..+| .++|
T Consensus 457 ~tf~~Fs~f~~~a---i-r~--~al----~~lpVv~v~~~~gigvG~dG~THq~ied~a~l-------r~iP-------- 511 (690)
T 3m49_A 457 GTFFVFSDYLRPA---I-RL--AAL----MQLPVTYVFTHDSIAVGEDGPTHEPIEQLAAL-------RAMP-------- 511 (690)
T ss_dssp EEEGGGGGGGHHH---H-HH--HHH----HTCCCEEEEECCSGGGCTTCGGGCCSSHHHHH-------HTST--------
T ss_pred EecHHHHHHHHHH---H-HH--HHh----cCCCcEEEEECCCcCCCCCCCccCCHHHHHHH-------hcCC--------
Confidence 8 8999998776 3 11 121 3589999999843 34 68999665466889 8999
Q ss_pred hhhcccCCCeEEEecCCHhHHHHHHHHHHhc-CCCCcEEEEecccCcCCCCCCC--CcccccCCCceEEeccCCCccccC
Q psy8742 859 AVRQLHDINWIIANCTTPANLFHILRRQIAL-PFRKPLVLMTPKSLLRHPEAKS--SFDDMIEGTEFLRVIPDDSISERK 935 (968)
Q Consensus 859 ~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~-~~r~Pli~~~pK~Llr~~~a~s--~l~e~~~g~~F~~vi~d~~~~~~~ 935 (968)
||+|+.|++|.+++++|+.+++. + .|++|..|+.-+..-.... ...++..|. .|+-+..
T Consensus 512 --------nl~V~~Pad~~E~~~~l~~Ai~~~~--~Pv~ir~~R~~~p~~~~~~~~~~~~~~~G~---~vlr~g~----- 573 (690)
T 3m49_A 512 --------NVSVIRPADGNESVAAWRLALESTN--KPTALVLTRQDLPTLEGAKDDTYEKVAKGA---YVVSASK----- 573 (690)
T ss_dssp --------TCEEECCSSHHHHHHHHHHHHHCSS--SCEEEECCSSEEECCHHHHTTHHHHHHTSC---EEEECCS-----
T ss_pred --------CCEEEeeCCHHHHHHHHHHHHHcCC--CCEEEEeecccCCCCCccccccccccCCCe---EEEEecC-----
Confidence 99999999999999999999997 6 8999998875432100000 012233343 3444321
Q ss_pred CCCccEEEEecchhHHHHHHHHHh
Q psy8742 936 ADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 936 ~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
..+-+-+|+++|...+..+++.++
T Consensus 574 ~g~~dvtiia~G~~v~~Al~Aa~~ 597 (690)
T 3m49_A 574 KETADVILLATGSEVSLAVEAQKA 597 (690)
T ss_dssp SSSCSEEEEECTTHHHHHHHHHHH
T ss_pred CCCCCEEEEEechHHHHHHHHHHH
Confidence 011245899999988877776553
No 20
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.98 E-value=6.8e-31 Score=313.81 Aligned_cols=413 Identities=13% Similarity=0.092 Sum_probs=266.5
Q ss_pred cCCCCccccCchhhhHhhHhHhhcC--CCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCc
Q psy8742 413 ANPSHLEAVDPVVQGKTRAEQFYRG--DGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQI 487 (968)
Q Consensus 413 ~NpShLea~~PvA~G~A~A~q~~~~--~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqi 487 (968)
...+|||.+.|.|+|+|+|.++... ..+..+..++|++|||++ .+|.++|+||+| +|| -+|+|+.||+|
T Consensus 111 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~-~eG~~~Eal~~A~~~~L~-----~livi~nnN~~ 184 (632)
T 3l84_A 111 IATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDL-QEGISYEACSLAGLHKLD-----NFILIYDSNNI 184 (632)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHH-HSHHHHHHHHHHHHTTCT-----TEEEEEEECSE
T ss_pred cCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcch-hhccHHHHHHHHHHcCCC-----cEEEEEECCCc
Confidence 3447899999999999999987421 001225679999999994 799999999999 787 49999999999
Q ss_pred ccccCCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCCCCC-CC----
Q psy8742 488 GFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEP-MF---- 562 (968)
Q Consensus 488 g~TT~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~Ddp-~y---- 562 (968)
+++++.... ....+.+++++||++++.|||+|++++..|.+.|. +.++|+||++.|+|-+||....++ .+
T Consensus 185 ~i~~~~~~~-~~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~----~~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~ 259 (632)
T 3l84_A 185 SIEGDVGLA-FNENVKMRFEAQGFEVLSINGHDYEEINKALEQAK----KSTKPCLIIAKTTIAKGAGELEGSHKSHGAP 259 (632)
T ss_dssp ETTEEGGGT-CCCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHH----TCSSCEEEEEECCTTTTCGGGTTCGGGSSSC
T ss_pred ccccchhhh-cChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHH----hCCCCEEEEEeeEeeecCCCCCCcccccCCC
Confidence 999876654 34678899999999999999999999998888775 468999999999999999754332 21
Q ss_pred CCHHHHHHHHhC--CCHHHHHHHHHHHccCCCHHHHHHHH------HHHHHHHHHHHHHHhhccCCCCc-cccCCCCCCC
Q psy8742 563 TQPLMYKIIKKT--PPALDKYANKLIEEKVVTEEQVKDVK------EKYDKICEEAYVNARKETHIKYK-DWLDSPWSGF 633 (968)
Q Consensus 563 t~p~~y~~i~~~--~dpi~~y~~~Li~~Gv~t~ee~~~i~------~e~~~~l~~a~~~A~~~~~~~~~-~~~~~~w~~~ 633 (968)
-.+++++..++. .||...| .+.++..+.++ +...+..++.+.. + +.|... .++...|...
T Consensus 260 l~~e~~~~~~~~l~~~~~~~f--------~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~-~--~~p~~~~~~~p~~~~~~ 328 (632)
T 3l84_A 260 LGEEVIKKAKEQAGFDPNISF--------HIPQASKIRFESAVELGDLEEAKWKDKLEK-S--AKKELLERLLNPDFNKI 328 (632)
T ss_dssp CCHHHHHHHHHHHTCCTTCCS--------CCCHHHHHHHHTHHHHHHHHHHHHHHHHHH-S--SCHHHHHHHHSCCSTTC
T ss_pred CCHHHHHHHHHHhCCCCCCCc--------cCChHHHHHHHHHHhhcchhHHHHHHHhhc-c--cCchhhhhhCccchhhh
Confidence 134555543210 1111101 01222222111 1111122222222 1 111100 0111123321
Q ss_pred CCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhhhhcCCcEEE
Q psy8742 634 FEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMAFGSLLKEGIHVRL 713 (968)
Q Consensus 634 ~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sLl~eg~~Vrl 713 (968)
.... ..+.. +. .-.+....|..+.. ...++.+
T Consensus 329 ~~~~------~~~~~-------------~a---~r~a~~~~l~~l~~--------------------------~~p~~v~ 360 (632)
T 3l84_A 329 AYPD------FKGKD-------------LA---TRDSNGEILNVLAK--------------------------NLEGFLG 360 (632)
T ss_dssp CCCC------CTTCC-------------BC---HHHHHHHHHHHHHH--------------------------HCTTEEE
T ss_pred cchh------ccccc-------------hH---HHHHHHHHHHHHHh--------------------------hCCCEEE
Confidence 1100 00000 00 00112223333332 3345558
Q ss_pred eccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccC-CCCccccccchhhhhHh
Q psy8742 714 SGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMT-NPNTLVCWEAQFGDFNN 792 (968)
Q Consensus 714 ~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~-g~~~l~iWE~qfgDF~~ 792 (968)
.+.|+..-+ + .+ . ...++||+.|++|++|+|.+++|++.|+|+. |.+|++ +. |.+|+.
T Consensus 361 ~~aDl~~s~--------------~-~~--~-~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~--~~-f~~F~~ 419 (632)
T 3l84_A 361 GSADLGPSN--------------K-TE--L-HSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFS--AT-FFIFSE 419 (632)
T ss_dssp EESSCHHHH--------------T-CC--C-TTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEE--EE-EGGGHH
T ss_pred EecccCCcc--------------C-cc--h-hcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEE--Ee-cHHHHH
Confidence 899986311 1 11 1 1245688999999999999999999999999 899999 87 888876
Q ss_pred hhhHHHHHHHhhhccccccccCcEEEcCc-cC-CC-CCcccCCChHHHHhcccCCCCcccccccchhhhhhhcccCCCeE
Q psy8742 793 TAQCIIDQFISSGQAKWVRQSGLVMLLPH-GL-EG-MGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWI 869 (968)
Q Consensus 793 ~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~-~g-~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~ 869 (968)
-+ +||+...+- ...|+|+++.| |+ .| .||.|.+---+.+| .++| ||+
T Consensus 420 ~~---~~~ir~~a~----~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~l-------r~iP----------------~l~ 469 (632)
T 3l84_A 420 YL---KPAARIAAL----MKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTF-------RAMP----------------NFL 469 (632)
T ss_dssp HH---HHHHHHHHH----HTCCCEEEEECCSGGGCTTCGGGSCSSHHHHH-------HHSS----------------SCE
T ss_pred HH---HHHHHHHhc----cCCCEEEEEECCCcCCCCCCCCCCCHhHHHHH-------hcCC----------------CCE
Confidence 55 788754332 35899999865 44 34 68988555466888 8999 999
Q ss_pred EEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCCCceEEeccCCCccccCCCCccEEEEecchh
Q psy8742 870 IANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKV 949 (968)
Q Consensus 870 V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F~~vi~d~~~~~~~~~~v~rvilcsGkv 949 (968)
|+.|++|.+++++|+.+++.+ .|++|..|+..+ .+.......++..|. .|+.+. +.-+-+|+++|..
T Consensus 470 V~~P~d~~e~~~~l~~A~~~~--~Pv~ir~~r~~~-~~~~~~~~~~~~~g~---~vl~~~-------~g~dvtiia~G~~ 536 (632)
T 3l84_A 470 TFRPADGVENVKAWQIALNAD--IPSAFVLSRQKL-KALNEPVFGDVKNGA---YLLKES-------KEAKFTLLASGSE 536 (632)
T ss_dssp EECCSSHHHHHHHHHHHHHCS--SCEEEECCSSCB-CCCCCCSBCCGGGSS---EEEECC-------TTCSEEEEECGGG
T ss_pred EEecCCHHHHHHHHHHHHhCC--CCEEEEEcCCCC-CCCcccccccccccc---EEEEec-------CCCCEEEEEechH
Confidence 999999999999999999976 999999987654 222111122343332 233331 1223589999998
Q ss_pred HHHHHHHHHh
Q psy8742 950 YYDLIKARND 959 (968)
Q Consensus 950 yydl~~~r~~ 959 (968)
....+++.++
T Consensus 537 v~~al~Aa~~ 546 (632)
T 3l84_A 537 VWLCLESANE 546 (632)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776543
No 21
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.97 E-value=1.5e-31 Score=322.69 Aligned_cols=426 Identities=13% Similarity=0.090 Sum_probs=259.6
Q ss_pred CCCccccCchhhhHhhHhHhhcC--C---CCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCC
Q psy8742 415 PSHLEAVDPVVQGKTRAEQFYRG--D---GEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQ 486 (968)
Q Consensus 415 pShLea~~PvA~G~A~A~q~~~~--~---~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNq 486 (968)
.++||.+.|.|+|+|+|.++... + .+-.+..++|++|||++ .+|.++|+||+| +|| -+|+||.||+
T Consensus 154 tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l-~eG~~~Eal~~A~~~~L~-----~livI~dnN~ 227 (711)
T 3uk1_A 154 TGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCL-MEGISHEACSLAGTLKLN-----KLIALYDDNG 227 (711)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHH-HSHHHHHHHHHHHHTTCT-----TEEEEEEECS
T ss_pred ccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcch-hhccHHHHHHHHHHhCCC-----cEEEEEECCC
Confidence 47889999999999999986421 0 01125679999999995 699999999999 787 4999999999
Q ss_pred cccccCCCcccccccHhHhhhhcCCcEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCCC-CCCCCC-
Q psy8742 487 IGFTTDPRFSRSSSYCTDVARVVNAPIFH-VNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEI-DEPMFT- 563 (968)
Q Consensus 487 ig~TT~~~~~rss~~~td~Ak~~giP~~h-VDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne~-Ddp~yt- 563 (968)
|+++++..... ...+.+++++||++++. |||+|++++..|.+.|. +.++|+||++.|+|-+||+.. |...+-
T Consensus 228 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~----~~~~P~lI~v~T~kG~G~~~~e~~~~~Hg 302 (711)
T 3uk1_A 228 ISIDGDVVNWF-HDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAK----RSDKPSLICCKTRIGNGAATKAGGHDVHG 302 (711)
T ss_dssp EETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHT----TCSSCEEEEEEC-----------------
T ss_pred cccccchhhhc-CCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH----hCCCCEEEEEccccccCCCCCCCcccccC
Confidence 99998766553 46789999999999999 99999999999888774 468999999999999999754 333322
Q ss_pred ---CHHHHHHHHhC----CCHH----HHHHHH--HHHccCCCHHHHHHHHHHHHH---HHHHHHHHHhhccCCCCccccC
Q psy8742 564 ---QPLMYKIIKKT----PPAL----DKYANK--LIEEKVVTEEQVKDVKEKYDK---ICEEAYVNARKETHIKYKDWLD 627 (968)
Q Consensus 564 ---~p~~y~~i~~~----~dpi----~~y~~~--Li~~Gv~t~ee~~~i~~e~~~---~l~~a~~~A~~~~~~~~~~~~~ 627 (968)
.+++++..++. .+|. +.|..+ + ++|...++++++.-+++++ ++.+.++...+.
T Consensus 303 ~~l~~e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~-~~g~~~~~~w~~~~~~~~~~~p~~a~~~~~~~~~---------- 371 (711)
T 3uk1_A 303 APLGADEIAKTREALGWTWAPFVIPQEVYAAWDAK-EAGKRSEDDWNAAFAQYRAKYPAEAAEFERRMAG---------- 371 (711)
T ss_dssp ---CHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHT----------
T ss_pred CCCCHHHHHHHHHHhCCCCCCccCChHHHHHHHHH-hccchhHHHHHHHHHHHHhhChhhHHHHHHhhcc----------
Confidence 23444443221 1221 111111 1 2221111111111111111 011111111110
Q ss_pred CCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhh--HHHHHHHHHHHHHHhhhhhchhhhhhhHhhhhhhh
Q psy8742 628 SPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFV--IHKGIERILKARLQMVESRTVDWALGEAMAFGSLL 705 (968)
Q Consensus 628 ~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~--~h~~l~~~l~~r~~~~~~~~idwa~aE~LA~~sLl 705 (968)
.+| +++. +-+.+.++.+...++. .-=|..++ ...|+
T Consensus 372 ---------------------------------~~p---~~~~~~~~~~~~~~~~~~~~~a----tR~A~~~~--L~~l~ 409 (711)
T 3uk1_A 372 ---------------------------------TLP---ADWAAKAAAIVAGANERGETVA----TRKASQQT--IEGLA 409 (711)
T ss_dssp ---------------------------------CCC---TTHHHHHHHHHHHHHHHCCCEE----HHHHHHHH--HHHHH
T ss_pred ---------------------------------CCC---chHHHHhhHhhhhhhccccchh----HHHHHHHH--HHHHH
Confidence 111 1110 0000111110000000 00011121 22445
Q ss_pred hcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCC---CC--CcEeecCCcchHHHHHHhhhccc-CCCCc
Q psy8742 706 KEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPD---QA--PYTVCNSSLSEFGVLGFELGFSM-TNPNT 779 (968)
Q Consensus 706 ~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~---~g--~~~v~nspLsE~avlG~~~G~s~-~g~~~ 779 (968)
....+|.+.++|+..-+ +..+..+..+.++ |+ ..|++|++|+|.+++|++.|+|+ .|.+|
T Consensus 410 ~~~p~vv~~~aDl~~s~--------------~~~~~~~~~f~~~~~~~p~~~~R~~d~GIaE~~mv~~AaGlA~~~G~~P 475 (711)
T 3uk1_A 410 AVLPELLGGSADLTGSN--------------LTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAINGLVLHGGYKP 475 (711)
T ss_dssp HHCTTEEEEESSCHHHH--------------TCCCTTCCBCEECSSSSSEECCSEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred hhCCCEEEEeccccCcC--------------CcccccchhhhhhhccCCCCCCcEEEeCccHHHHHHHHHHHHHcCCCEE
Confidence 56788889999997511 1112456667777 74 38999999999999999999999 59999
Q ss_pred cccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc-cC--CCCCcccCCChHHHHhcccCCCCcccccccchh
Q psy8742 780 LVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH-GL--EGMGPEHSSARLERFLQMSDDEPIRVILVLVPI 856 (968)
Q Consensus 780 l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~-G~--~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~ 856 (968)
++ +. |.+|+.-+ .||+..++- ...|++++.+| |. ...||.|.+---..+| .++|
T Consensus 476 v~--~~-f~~F~~~~---~~~ir~~a~----~~lpv~~v~thdg~gvG~dG~THq~~ed~a~l-------r~iP------ 532 (711)
T 3uk1_A 476 FG--GT-FLTFSDYS---RNALRVAAL----MKVPSIFVFTHDSIGLGEDGPTHQSVEHVASL-------RLIP------ 532 (711)
T ss_dssp EE--EE-EGGGHHHH---HHHHHHHHH----HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHH-------HTST------
T ss_pred EE--EE-hHHHHHHH---HHHHHHhhh----cCCCEEEEEECCCcCcCCCCCccCChhHHHHH-------hcCC------
Confidence 99 75 99998555 788755432 35899999877 33 3468988544355888 8999
Q ss_pred hhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCC-CcccccCCCceEEeccCCCccccC
Q psy8742 857 EFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKS-SFDDMIEGTEFLRVIPDDSISERK 935 (968)
Q Consensus 857 ~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s-~l~e~~~g~~F~~vi~d~~~~~~~ 935 (968)
||+|+.|++|.++.++|+.+++.+ .|++|..|+.-+....... ....+..|. .|+-+.+ . .
T Consensus 533 ----------nl~V~~Pad~~E~~~~l~~Ai~~~--~Pv~ir~~r~~~p~~~~~~~~~~~i~~G~---~vl~~~~--G-~ 594 (711)
T 3uk1_A 533 ----------NLDVWRPADTVETAVAWTYAVAHQ--HPSCLIFSRQNLAFNARTDAQLANVEKGG---YVLRDWD--E-E 594 (711)
T ss_dssp ----------TCEEECCSSHHHHHHHHHHHHHSS--SCEEEECCSSEECCCCCCHHHHHHGGGSS---EEEECCC--S-S
T ss_pred ----------CCEEEecCCHHHHHHHHHHHHhcC--CCEEEEeeCCCCCCCCCccccccccCCCe---EEEEecC--C-C
Confidence 999999999999999999999977 9999998876442211100 012233343 2444310 0 0
Q ss_pred CCCccEEEEecchhHHHHHHHHHh
Q psy8742 936 ADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 936 ~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
..+-+-+|+++|......+++.++
T Consensus 595 ~~~~dvtiia~G~~v~~al~Aa~~ 618 (711)
T 3uk1_A 595 IVARKIILIATGSEVELAMKAVEP 618 (711)
T ss_dssp CCSEEEEEEECTTHHHHHHHHHHH
T ss_pred CCCCCEEEEEecHHHHHHHHHHHH
Confidence 001345899999988877776554
No 22
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=99.95 E-value=3.1e-29 Score=279.97 Aligned_cols=214 Identities=21% Similarity=0.267 Sum_probs=175.1
Q ss_pred chhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHh
Q psy8742 690 TVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFE 769 (968)
Q Consensus 690 ~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~ 769 (968)
..+|+++|+| .+|+.++.+|++.|+|+++- |+.|.+|+++.++||+.|++|++|||.+++|++
T Consensus 16 ~~~~a~~~~L--~~l~~~~~~vv~~~~D~~~~---------------g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a 78 (341)
T 2ozl_B 16 TVRDAINQGM--DEELERDEKVFLLGEEVAQY---------------DGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIA 78 (341)
T ss_dssp EHHHHHHHHH--HHHHHHCTTEEEEETTSSTT---------------CCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHH
T ss_pred cHHHHHHHHH--HHHHhhCCCEEEECCccccc---------------CCcchhHHHHHHHhCCCcEEECchhHHHHHHHH
Confidence 3789999999 49999999999999999861 236788999999999999999999999999999
Q ss_pred hhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccc------cccCcEEEcCccCCC-CCcccCCChHHHHhccc
Q psy8742 770 LGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWV------RQSGLVMLLPHGLEG-MGPEHSSARLERFLQMS 842 (968)
Q Consensus 770 ~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~------~~~~lv~~lP~G~~g-~GpeHSs~r~er~lql~ 842 (968)
+|+|+.|.+|++ ++||++|+.-| +||++++. .||+ ...|+|+++|||+.| .||+||++ +|++|
T Consensus 79 ~G~A~~G~rp~~--~~~f~~F~~~a---~dqi~~~~-a~~~y~~~g~~~~pvv~~~~~G~~g~~G~tHs~~-~ea~l--- 148 (341)
T 2ozl_B 79 VGAAMAGLRPIC--EFMTFNFSMQA---IDQVINSA-AKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQC-FAAWY--- 148 (341)
T ss_dssp HHHHHTTCEEEE--ECSSGGGGGGG---HHHHHTTT-TTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCCC-CHHHH---
T ss_pred HHHHHCCCEEEE--EeccHHHHHHH---HHHHHHHH-HHHHhhccccCCCCEEEEEcCcCCCCCCcchhhH-HHHHh---
Confidence 999999988876 99999999555 99999877 5665 678999999999855 89999877 99998
Q ss_pred CCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCC-cccccCCCc
Q psy8742 843 DDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSS-FDDMIEGTE 921 (968)
Q Consensus 843 ~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~-l~e~~~g~~ 921 (968)
.++| ||+|++|+||++++++||++++.+ +|++|++||.||+++..+++ +.+ . .
T Consensus 149 ----~~iP----------------~l~V~~Psd~~e~~~~l~~a~~~~--~Pv~i~~~~~~~~~~~~v~p~~~~---~-~ 202 (341)
T 2ozl_B 149 ----GHCP----------------GLKVVSPWNSEDAKGLIKSAIRDN--NPVVVLENELMYGVPFEFPPEAQS---K-D 202 (341)
T ss_dssp ----HTST----------------TCEEECCCSHHHHHHHHHHHHHSS--SCEEEEECHHHHTCEEECCHHHHS---T-T
T ss_pred ----ccCC----------------CCEEEEeCCHHHHHHHHHHHHhcC--CCEEEEEChhhhcCCCCcCCccCC---c-c
Confidence 7889 999999999999999999999975 99999999999987765531 111 0 1
Q ss_pred eEEeccCCCccccCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 922 FLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 922 F~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
|...++.... .. ++.+.+|+|+|..++.+++++++
T Consensus 203 ~~~~~Gk~~v-~~--~g~dv~iia~Gs~~~~a~~Aa~~ 237 (341)
T 2ozl_B 203 FLIPIGKAKI-ER--QGTHITVVSHSRPVGHCLEAAAV 237 (341)
T ss_dssp CCCCTTCCEE-EE--CCSSEEEEECSTHHHHHHHHHHH
T ss_pred ccccCCceEE-ec--cCCCEEEEEeCHHHHHHHHHHHH
Confidence 2111221100 01 12456999999999999988875
No 23
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=99.95 E-value=8.6e-28 Score=267.76 Aligned_cols=225 Identities=20% Similarity=0.249 Sum_probs=181.0
Q ss_pred chhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHh
Q psy8742 690 TVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFE 769 (968)
Q Consensus 690 ~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~ 769 (968)
+++|..+...++..|+.++.+|++.|+|+++- +++|.++.+|.++||+.|++|++|||.+++|++
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~---------------~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a 68 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYF---------------GGVFRCTEGLQTKYGKSRVFDAPISESGIVGTA 68 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSS---------------CCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCccccc---------------CCcchhHHHHHHHhCCCcEEEccccHHHHHHHH
Confidence 35777788888899999999999999999861 246789999999999999999999999999999
Q ss_pred hhcccCCCCccccccchhhhhHhhhhHHHHHHHhh-hccccc----cccCcEEEcCccCCCCCcccCCChHHHHhcccCC
Q psy8742 770 LGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISS-GQAKWV----RQSGLVMLLPHGLEGMGPEHSSARLERFLQMSDD 844 (968)
Q Consensus 770 ~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~-~~~kw~----~~~~lv~~lP~G~~g~GpeHSs~r~er~lql~~~ 844 (968)
+|+|+.|.+|++ ++||++|++- ++||+++. +..+|. ...|+|+++|||+.+.||.|++.+.++||
T Consensus 69 ~G~A~~G~rp~~--~~t~~~F~~~---a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g~~~G~th~s~~d~~~l----- 138 (338)
T 1qs0_B 69 VGMGAYGLRPVV--EIQFADYFYP---ASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEAMF----- 138 (338)
T ss_dssp HHHHHHTCEEEE--ECSCGGGCGG---GHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSCCSSSSCCCHHHH-----
T ss_pred HHHHhCCCEEEE--EeccHhHHHH---HHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCCCCCCcccccccHHHHH-----
Confidence 999999998877 9999999854 49999974 455564 36899999999997888988888899999
Q ss_pred CCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCC---CCCcccccC---
Q psy8742 845 EPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEA---KSSFDDMIE--- 918 (968)
Q Consensus 845 ~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a---~s~l~e~~~--- 918 (968)
.++| ||+|+.|+||.+++++|+.+++.+ +|++|++||.|+|.+.. .+++.++..
T Consensus 139 --~~iP----------------~l~V~~Psd~~e~~~~l~~A~~~~--~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~ 198 (338)
T 1qs0_B 139 --TQVC----------------GLRTVMPSNPYDAKGLLIASIECD--DPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPH 198 (338)
T ss_dssp --TTST----------------TCEEECCCSHHHHHHHHHHHHHSS--SCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTT
T ss_pred --hcCC----------------CCEEEeeCCHHHHHHHHHHHHhcC--CcEEEEEchHhhcCcccccccCccchhhcccc
Confidence 6789 999999999999999999999864 99999999999997654 334332211
Q ss_pred ----CCceEEeccCCCccccCCCCccEEEEecchhHHHHHHHHHhcCC
Q psy8742 919 ----GTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNL 962 (968)
Q Consensus 919 ----g~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~~~~ 962 (968)
...|...++.... . .++.+.+|+|+|..++..+++.+++++
T Consensus 199 ~~~~~~~~~~~~gk~~~-~--~~g~dv~iva~G~~~~~a~~Aa~~~Gi 243 (338)
T 1qs0_B 199 SAVPDGYYTVPLDKAAI-T--RPGNDVSVLTYGTTVYVAQVAAEESGV 243 (338)
T ss_dssp CEEESSCCCCCTTCCCE-E--ECCSSCEEEECTTHHHHHHHHHHHHCC
T ss_pred cccCCCCcccccCceeE-e--cCCCCEEEEEeCHHHHHHHHHHHHcCC
Confidence 1123322222110 1 123456999999999999998887554
No 24
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=99.94 E-value=1.2e-27 Score=269.88 Aligned_cols=215 Identities=23% Similarity=0.318 Sum_probs=157.5
Q ss_pred chhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHh
Q psy8742 690 TVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFE 769 (968)
Q Consensus 690 ~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~ 769 (968)
.++|..+...|+..|+.++.+|++.|+|+++- +++|.+|++|.++||+.|++|++|||.+++|++
T Consensus 50 ~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~---------------~g~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a 114 (369)
T 1ik6_A 50 MANMAKAINMALHEEMERDERVVVLGEDVGKK---------------GGVFLVTEGLYERFGPERVIDTPLNEGGILGFA 114 (369)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEEC------------------------CTTTTHHHHHCTTTEEECCSCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCCCEEEECCccccc---------------CCcchhHHHHHHHhCCCcEEECcccHHHHHHHH
Confidence 36777777888889999999999999999861 247889999999999999999999999999999
Q ss_pred hhcccCCCCccccccchhhhhHhhhhHHHHHHHhh-hccccc----cccCcEEEcCccCCCCCcccCCChHHHHhcccCC
Q psy8742 770 LGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISS-GQAKWV----RQSGLVMLLPHGLEGMGPEHSSARLERFLQMSDD 844 (968)
Q Consensus 770 ~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~-~~~kw~----~~~~lv~~lP~G~~g~GpeHSs~r~er~lql~~~ 844 (968)
+|+|+.|.+|++ ++||++|+.-| +||++++ +..||. +.+|+|+++|||+.+.|+.|+|.+.++||
T Consensus 115 ~G~A~~G~rpv~--~~tf~~Fl~~a---~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~hs~~~~a~l----- 184 (369)
T 1ik6_A 115 MGMAMAGLKPVA--EIQFVDFIWLG---ADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHSNSPEAIF----- 184 (369)
T ss_dssp HHHHHTTCEEEE--ECCCC----CC---HHHHHHHHHHHHC------CCCCEEEEEECC-----------HHHHH-----
T ss_pred HHHHHCCCeeEE--EecchhHHHHH---HHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCccccccHHHHH-----
Confidence 999999988776 99999999544 9999985 455675 37899999999884335444444589999
Q ss_pred CCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCC-CCCCccc--ccCCCc
Q psy8742 845 EPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPE-AKSSFDD--MIEGTE 921 (968)
Q Consensus 845 ~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~-a~s~l~e--~~~g~~ 921 (968)
.++| ||+|++|+||++++++||++++. ++|++|++||.|+|.+. .++ -++ +.-| .
T Consensus 185 --~~iP----------------nl~V~~Psd~~e~~~ll~~A~~~--~~Pv~i~~p~~l~r~~~~~v~-~~~~~~~~G-~ 242 (369)
T 1ik6_A 185 --VHTP----------------GLVVVMPSTPYNAKGLLKAAIRG--DDPVVFLEPKILYRAPREEVP-EGDYVVEIG-K 242 (369)
T ss_dssp --HTCT----------------TCEEECCCSHHHHHHHHHHHHHS--SSCEEEEEEGGGSSCCCEEEE-CSSCCCCTT-C
T ss_pred --cCCC----------------CcEEEecCCHHHHHHHHHHHHhC--CCCEEEEEehhhhccCCCCcC-CCcccccCC-c
Confidence 7889 99999999999999999999984 49999999999998742 221 111 1112 1
Q ss_pred eEEeccCCCccccCCCCccEEEEecchhHHHHHHHHHhcC
Q psy8742 922 FLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNN 961 (968)
Q Consensus 922 F~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~~~ 961 (968)
++.+. ++.+.+|+|+|..++..++++++..
T Consensus 243 ~~v~~----------~g~dv~Iia~G~~v~~a~~Aa~~L~ 272 (369)
T 1ik6_A 243 ARVAR----------EGDDVTLVTYGAVVHKALEAAERVK 272 (369)
T ss_dssp CEEEE----------CCSSEEEEECTTHHHHHHHHHHTSS
T ss_pred eEEEE----------cCCCEEEEEeCHHHHHHHHHHHHhC
Confidence 33221 1234699999999999999998763
No 25
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=99.94 E-value=2.8e-27 Score=264.31 Aligned_cols=215 Identities=20% Similarity=0.271 Sum_probs=176.2
Q ss_pred hchhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHH
Q psy8742 689 RTVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGF 768 (968)
Q Consensus 689 ~~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~ 768 (968)
..++|..|...|+..|+.++.+|++.|+|++.| ++|.++.++.++||+.|++|++|+|.+++|+
T Consensus 19 ~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~----------------gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~ 82 (342)
T 2bfd_B 19 QKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFG----------------GVFRCTVGLRDKYGKDRVFNTPLCEQGIVGF 82 (342)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTCEEEETTTTTT----------------CTTSTTTTHHHHHCTTTEEECCSCHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEcCccCCC----------------cccchHHHHHHHhCCCeEEEcCcCHHHHHHH
Confidence 458899999999999999999999999999862 2456889999999999999999999999999
Q ss_pred hhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhh-ccccc--c--cc-CcEEEcCccCCCCCcccCCChHHHHhccc
Q psy8742 769 ELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSG-QAKWV--R--QS-GLVMLLPHGLEGMGPEHSSARLERFLQMS 842 (968)
Q Consensus 769 ~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~-~~kw~--~--~~-~lv~~lP~G~~g~GpeHSs~r~er~lql~ 842 (968)
++|+|+.|.+|++ ++||++|+.-| +||+++.. ..+|. . .+ |+|+++|||+.+.||.|++.+.++||
T Consensus 83 a~G~A~~G~rp~~--~~tf~~F~~~a---~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~~~G~th~~~~d~~~l--- 154 (342)
T 2bfd_B 83 GIGIAVTGATAIA--EIQFADYIFPA---FDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFF--- 154 (342)
T ss_dssp HHHHHHTTCCEEE--ECSSGGGCGGG---HHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSSCGGGSSCCCHHHH---
T ss_pred HHHHHHCCCeeEE--EecchhHHHHH---HHHHHHHHHHHHhhhcCCccCCCEEEEEecCCCCCCcchhhHhHHHHH---
Confidence 9999999998877 99999997655 99999654 44452 2 34 99999999887788988888899999
Q ss_pred CCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCccccc--CCC
Q psy8742 843 DDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMI--EGT 920 (968)
Q Consensus 843 ~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~--~g~ 920 (968)
.++| ||+|+.|+||.+++++|+.+++.+ +|++|++||.|+|.+....+.+++. -|.
T Consensus 155 ----~~iP----------------~l~V~~Psd~~e~~~~l~~a~~~~--~Pv~i~~p~~l~r~~~~~~~~~~~~~~~G~ 212 (342)
T 2bfd_B 155 ----AHCP----------------GIKVVIPRSPFQAKGLLLSCIEDK--NPCIFFEPKILYRAAAEEVPIEPYNIPLSQ 212 (342)
T ss_dssp ----HTST----------------TCEEECCSSHHHHHHHHHHHHHSS--SCEEEEEEGGGTTSCCEEEESSCCCCCSSC
T ss_pred ----hcCC----------------CcEEEeeCCHHHHHHHHHHHHhcC--CcEEEEecchhcCCCCCCCCCcccceeCCc
Confidence 7789 999999999999999999999864 9999999999999764432222221 111
Q ss_pred ceEEeccCCCccccCCCCccEEEEecchhHHHHHHHHHhc
Q psy8742 921 EFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDN 960 (968)
Q Consensus 921 ~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~~ 960 (968)
+. ++. ++-+.+|+|+|..++..++++++.
T Consensus 213 -~~-v~~---------~g~dv~iia~G~~~~~a~~Aa~~L 241 (342)
T 2bfd_B 213 -AE-VIQ---------EGSDVTLVAWGTQVHVIREVASMA 241 (342)
T ss_dssp -CE-EEE---------CCSSEEEEECTTHHHHHHHHHHHH
T ss_pred -eE-Eec---------cCCCEEEEEECHHHHHHHHHHHHH
Confidence 11 111 123569999999999999887753
No 26
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=99.94 E-value=1.1e-26 Score=257.33 Aligned_cols=214 Identities=22% Similarity=0.344 Sum_probs=173.0
Q ss_pred chhhhhhhHhhhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHh
Q psy8742 690 TVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFE 769 (968)
Q Consensus 690 ~idwa~aE~LA~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~ 769 (968)
.++|..|...|+..|+.++.+|++.|+|+++- +++|.++.++.++||+.|++|++|+|.+++|++
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~---------------~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a 67 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKR---------------GGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAA 67 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTT---------------CCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCccccc---------------CCcchhhHHHHHHhCCCcEEECchhHHHHHHHH
Confidence 46899999999999999999999999999861 246778999999999999999999999999999
Q ss_pred hhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccc------cccCcEEEcCccCCCC-CcccCCChHHHHhccc
Q psy8742 770 LGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWV------RQSGLVMLLPHGLEGM-GPEHSSARLERFLQMS 842 (968)
Q Consensus 770 ~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~------~~~~lv~~lP~G~~g~-GpeHSs~r~er~lql~ 842 (968)
+|+|+.|.+|++ ++||++|++-| +||++++. .+|. ...|+|+++|+|+.|. |+.||+ ..++||
T Consensus 68 ~G~A~~G~~p~~--~~t~~~F~~~a---~dqi~~~~-a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~-~~~a~~--- 137 (324)
T 1umd_B 68 LGMAAHGLRPVA--EIQFADYIFPG---FDQLVSQV-AKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQ-SPEAHF--- 137 (324)
T ss_dssp HHHHHHTCEEEE--ECSSGGGCGGG---HHHHHHTT-TTHHHHTTTSSCCCCEEEEEECSSSSCGGGSSC-CCHHHH---
T ss_pred HHHHHCCCEEEE--EeccHhHHHHH---HHHHHHHH-HHHHhhcCCCCcCCEEEEEcCCCCCCCCCccch-hHHHHH---
Confidence 999999998877 99999998555 99999866 4542 6789999999988655 466666 589999
Q ss_pred CCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccccCCCce
Q psy8742 843 DDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEF 922 (968)
Q Consensus 843 ~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~~~g~~F 922 (968)
.++| ||+|+.|+||.+++++|+.+++.+ +|++|++||.|+|.+.. ++.+ ..|
T Consensus 138 ----~~iP----------------~~~V~~P~d~~e~~~~l~~a~~~~--~Pv~i~~p~~l~~~~~~-----~~~~-~~~ 189 (324)
T 1umd_B 138 ----VHTA----------------GLKVVAVSTPYDAKGLLKAAIRDE--DPVVFLEPKRLYRSVKE-----EVPE-EDY 189 (324)
T ss_dssp ----HTST----------------TCEEEECCSHHHHHHHHHHHHHCS--SCEEEEEEGGGSSSCCE-----ECCS-SCC
T ss_pred ----hcCC----------------CCEEEEeCCHHHHHHHHHHHHhcC--CCEEEEechHhcCCCCC-----CcCC-CCc
Confidence 6788 999999999999999999999854 99999999999987432 1111 113
Q ss_pred EEeccCCCccccCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 923 LRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 923 ~~vi~d~~~~~~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
...++.... . .++.+.+|+|+|..++..+++.++
T Consensus 190 ~~~~Gk~~~-~--~~g~dv~iva~G~~~~~a~~Aa~~ 223 (324)
T 1umd_B 190 TLPIGKAAL-R--REGKDLTLICYGTVMPEVLQAAAE 223 (324)
T ss_dssp CCCTTCCEE-E--ECCSSEEEEECGGGHHHHHHHHHH
T ss_pred cccCCcceE-E--ecCCCEEEEEecHHHHHHHHHHHH
Confidence 212222110 0 123467999999999999888765
No 27
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.93 E-value=4.5e-24 Score=262.52 Aligned_cols=434 Identities=14% Similarity=0.132 Sum_probs=251.9
Q ss_pred CCCCccccCchhhhHhhHhHhh--cCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCcc
Q psy8742 414 NPSHLEAVDPVVQGKTRAEQFY--RGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIG 488 (968)
Q Consensus 414 NpShLea~~PvA~G~A~A~q~~--~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqig 488 (968)
..+|+|.+.+.|+|+|+|.++. ++..++.+..++|++|||+ ..+|.++|+||+| +|+ .+|+||.||++.
T Consensus 190 ~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~-l~eG~~~EAl~~A~~~~L~-----nli~Vvn~N~~s 263 (886)
T 2qtc_A 190 PTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGE-MDEPESKGAITIATREKLD-----NLVFVINCNLQR 263 (886)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGG-GGSHHHHTTHHHHHHTTCT-----TEEEEEEECSBC
T ss_pred cccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCcc-ccccchHHHHHHHHHcCCC-----cEEEEEECCCcc
Confidence 3478999999999999999872 2211345678999999999 6899999999999 775 399999999999
Q ss_pred cccCCCcc-cccccHhHhhhhcCCcEEEE---------------------------------------------------
Q psy8742 489 FTTDPRFS-RSSSYCTDVARVVNAPIFHV--------------------------------------------------- 516 (968)
Q Consensus 489 ~TT~~~~~-rss~~~td~Ak~~giP~~hV--------------------------------------------------- 516 (968)
++++.... ....++..+.+++|++++.|
T Consensus 264 i~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~ 343 (886)
T 2qtc_A 264 LDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPE 343 (886)
T ss_dssp SSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHH
T ss_pred cCCCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchH
Confidence 99987653 24567889999999999999
Q ss_pred ------------------eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCC--CCCCC-----CCCHHHHHHH
Q psy8742 517 ------------------NSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNE--IDEPM-----FTQPLMYKII 571 (968)
Q Consensus 517 ------------------DGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne--~Ddp~-----yt~p~~y~~i 571 (968)
||+|+++|+.|.+.|.+. .++|+||++.|++-+||.. .+... +..+++++.+
T Consensus 344 ~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~---~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~ 420 (886)
T 2qtc_A 344 TAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHI 420 (886)
T ss_dssp HHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEECCTTTTCTTCC-------------CHHHHHH
T ss_pred HHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHc---CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHH
Confidence 799999999999999874 3589999999999999973 33322 3444455554
Q ss_pred HhCCCHHHHHHHHHHHccCC-CHHHHHH--------HHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCcc
Q psy8742 572 KKTPPALDKYANKLIEEKVV-TEEQVKD--------VKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKV 642 (968)
Q Consensus 572 ~~~~dpi~~y~~~Li~~Gv~-t~ee~~~--------i~~e~~~~l~~a~~~A~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 642 (968)
+++ .|+- +++++++ ...+++...+.. .+.....|.. +.....+
T Consensus 421 r~~-------------~~~~~~~e~~~~~~f~~~~~~~~~~~~~~~r~--~~l~g~~p~~-------~~~~~~~------ 472 (886)
T 2qtc_A 421 RDR-------------FNVPVSDADIEKLPYITFPEGSEEHTYLHAQR--QKLHGYLPSR-------QPNFTEK------ 472 (886)
T ss_dssp HHH-------------TTCSCCHHHHTTCCCCCCCTTSHHHHHHHHHH--HHTTSCSSCC-------CCSCCSC------
T ss_pred HHH-------------cCCCCChhhhccccccCCccchHHHHHHHHHH--HHhcccCcch-------hhhhhhc------
Confidence 431 1221 1111100 011111111100 0111111110 0000000
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhhh--hhhHhhhhhhhhcC---CcEEEeccc
Q psy8742 643 STTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWA--LGEAMAFGSLLKEG---IHVRLSGQD 717 (968)
Q Consensus 643 ~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idwa--~aE~LA~~sLl~eg---~~Vrl~GqD 717 (968)
..+|. .+.|. ..+. -.+..+.|- +.++| ..|+.+. .+|+....|
T Consensus 473 -----------------~~~p~-~~~~~------~~~~-----~~~~~~atr~afg~~L--~~l~~~~~~~~~iV~i~pd 521 (886)
T 2qtc_A 473 -----------------LELPS-LQDFG------ALLE-----EQSKEISTTIAFVRAL--NVMLKNKSIKDRLVPIIAD 521 (886)
T ss_dssp -----------------CCCCC-GGGGH------HHHS-----CCSSCBCHHHHHHHHH--HHHTTCTTTTTTEEEEESS
T ss_pred -----------------ccCCc-hhhhh------hhcc-----CCCCcchHHHHHHHHH--HHHHhhcccCCcEEEEcCc
Confidence 00110 00110 0000 000111111 11111 2333443 788888888
Q ss_pred cCC--Cc---cccccceeeeeccCCceeecC-CCC---CCCCCCcEeecCCcchHH-HH---HHhhhcccCC--CCcccc
Q psy8742 718 VER--GT---FSHRHHVLHHQTVDKATYRPL-NNL---YPDQAPYTVCNSSLSEFG-VL---GFELGFSMTN--PNTLVC 782 (968)
Q Consensus 718 v~r--Gt---FshRHav~~dq~~~~~~~~~~-~~l---~~~~g~~~v~nspLsE~a-vl---G~~~G~s~~g--~~~l~i 782 (968)
+.+ |+ | |=.-++.. ++..|.|- .+. ..+.-+.|++|++|+|.+ +. |++.|||+.| .+|+++
T Consensus 522 ~~~~~G~~dl~--~S~~i~~~--~~~~f~~~d~~~~~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~ 597 (886)
T 2qtc_A 522 EARTFGMEGLF--RQIGIYSP--NGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYI 597 (886)
T ss_dssp CSGGGTCHHHH--HHHCBBCC-------------------CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEE
T ss_pred cccccCccccc--cccccccc--CCcccccccchhhhhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEE
Confidence 654 32 0 00000000 11234321 111 112237899999999999 56 8999999999 799874
Q ss_pred ccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCc---cCCCCCcccCCChHHHHhcccCCCCcccccccchhhhh
Q psy8742 783 WEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPH---GLEGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFA 859 (968)
Q Consensus 783 WE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~---G~~g~GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~ 859 (968)
.-.+|+ -|-.+||+++.+.+. ..++.+-.-+ ++.+-||+|++---..+| .++|
T Consensus 598 ~ys~F~-----~qRa~Dqi~~~~d~~---~~~v~l~~~~~~~~~g~dG~tHq~~~~~a~l-------r~iP--------- 653 (886)
T 2qtc_A 598 YYSMFG-----FQRIGDLCWAAGDQQ---ARGFLIGGTSGRTTLNGEGLQHEDGHSHIQS-------LTIP--------- 653 (886)
T ss_dssp EEGGGS-----HHHHHHHHHHHHHTT---CCCEEEEESCSTTTSTTTCTTTCCSCHHHHH-------TTST---------
T ss_pred EehHHH-----HHHHHHHHHHHHHHh---cCCEEEEEecCcccCCCCCCccCCcchHHHH-------hhCC---------
Confidence 444443 244499999876332 1233322211 345678999984366778 8899
Q ss_pred hhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCc----EEEEecccC--cCCCCCCCCc-ccccCCCceEEeccCCCcc
Q psy8742 860 VRQLHDINWIIANCTTPANLFHILRRQIALPFRKP----LVLMTPKSL--LRHPEAKSSF-DDMIEGTEFLRVIPDDSIS 932 (968)
Q Consensus 860 ~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~P----li~~~pK~L--lr~~~a~s~l-~e~~~g~~F~~vi~d~~~~ 932 (968)
||+|+.|+++.++.++|+.++++.. .| +++..++.. +.++...... +.+..|. .|+.+.
T Consensus 654 -------nl~V~~Pada~E~~~~l~~al~~~~-gP~~e~v~i~~~r~~~~~~~p~~~~~~~~~~~gga---~vlr~g--- 719 (886)
T 2qtc_A 654 -------NCISYDPAYAYEVAVIMHDGLERMY-GEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGI---YKLETI--- 719 (886)
T ss_dssp -------TEEEECCSSHHHHHHHHHHHHHHHH-STTCCCCEEEEECCSCCBCCCCCCTTCHHHHHHTC---EEEEEE---
T ss_pred -------CCEEEecCCHHHHHHHHHHHHHhcC-CCCCceEEEEEeCCccccCCCCCCcchhhhccCce---EEEEec---
Confidence 9999999999999999999999731 58 888888754 4333211011 1111111 122221
Q ss_pred ccCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 933 ERKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 933 ~~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
..++-+-+|+|+|......+++.+.
T Consensus 720 --~~~~~dVtLia~G~~v~~al~AAe~ 744 (886)
T 2qtc_A 720 --EGSKGKVQLLGSGSILRHVREAAEI 744 (886)
T ss_dssp --CCSSEEEEEEECGGGHHHHHHHHHH
T ss_pred --CCCCCCEEEEeCcHHHHHHHHHHHH
Confidence 0012345899999999888877654
No 28
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=99.92 E-value=6.5e-25 Score=243.30 Aligned_cols=203 Identities=18% Similarity=0.220 Sum_probs=161.0
Q ss_pred hhhhhhhcCCcEEEeccccCCCccccccceeeeeccCCceeecCCCCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCc
Q psy8742 700 AFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNT 779 (968)
Q Consensus 700 A~~sLl~eg~~Vrl~GqDv~rGtFshRHav~~dq~~~~~~~~~~~~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~ 779 (968)
+...|+.++.+|++.|+|+++- +++|..+.++.++||+.|++|++|+|.+++|+++|+|+.|.+|
T Consensus 12 ~L~~l~~~~~~vv~~~~d~~~~---------------~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp 76 (324)
T 1w85_B 12 ALRIELKNDPNVLIFGEDVGVN---------------GGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRP 76 (324)
T ss_dssp HHHHHHHHCTTEEEEETTCSTT---------------CCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhHCcCEEEEcCccccc---------------CCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEE
Confidence 3457788999999999999861 1245688899999999999999999999999999999999988
Q ss_pred cccccchhhhhHhhhhHHHHHHHhhh-ccccc----cccCcEEEcCccCCCCC-cccCCChHHHHhcccCCCCccccccc
Q psy8742 780 LVCWEAQFGDFNNTAQCIIDQFISSG-QAKWV----RQSGLVMLLPHGLEGMG-PEHSSARLERFLQMSDDEPIRVILVL 853 (968)
Q Consensus 780 l~iWE~qfgDF~~~aQvi~Dq~i~~~-~~kw~----~~~~lv~~lP~G~~g~G-peHSs~r~er~lql~~~~~~~~p~~~ 853 (968)
++ ++||++|+.-| +||+++.. ..+|. ...|+|+++|+|+.|.| +.||+ ..++|| .++|
T Consensus 77 ~~--~~t~~~F~~~a---~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~-~~~a~~-------~~iP--- 140 (324)
T 1w85_B 77 VP--EIQFFGFVYEV---MDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSD-SLEGLV-------AQQP--- 140 (324)
T ss_dssp EE--BCSSGGGGGGT---HHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCCTTSSC-CCHHHH-------TTST---
T ss_pred EE--EecchhHHHHH---HHHHHHHHHHHhhhccCCCcCCEEEEEeccCCCCCCCcccc-cHHHHH-------ccCC---
Confidence 77 99999998555 99999754 34465 67899999999986655 56666 588999 6789
Q ss_pred chhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEecccCcCCCCCCCCcccc--cCCCceEEeccCCCc
Q psy8742 854 VPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDM--IEGTEFLRVIPDDSI 931 (968)
Q Consensus 854 ~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~Llr~~~a~s~l~e~--~~g~~F~~vi~d~~~ 931 (968)
||+|+.|+||.+++++|+.+++.+ +|++|++||.|+|.+....+-+++ .-|. +..+ .
T Consensus 141 -------------~l~V~~Psd~~e~~~~l~~a~~~~--~Pv~i~~p~~l~r~~~~~~~~~~~~~~~Gk-~~~~-~---- 199 (324)
T 1w85_B 141 -------------GLKVVIPSTPYDAKGLLISAIRDN--DPVIFLEHLKLYRSFRQEVPEGEYTIPIGK-ADIK-R---- 199 (324)
T ss_dssp -------------TCEEECCSSHHHHHHHHHHHHHSS--SCEEEEEETTTSSSCCEECCSSCCCCCTTC-CEEE-E----
T ss_pred -------------CCEEEeeCCHHHHHHHHHHHHHcC--CCEEEEechHhcCCCCCCCCCccccccCCc-eEEE-e----
Confidence 999999999999999999999854 999999999999874322121221 1121 2222 1
Q ss_pred cccCCCCccEEEEecchhHHHHHHHHHh
Q psy8742 932 SERKADSVEKLVFCSGKVYYDLIKARND 959 (968)
Q Consensus 932 ~~~~~~~v~rvilcsGkvyydl~~~r~~ 959 (968)
++-+.+|+|+|..++..+++.++
T Consensus 200 -----~g~dv~iva~G~~~~~a~~Aa~~ 222 (324)
T 1w85_B 200 -----EGKDITIIAYGAMVHESLKAAAE 222 (324)
T ss_dssp -----CCSSEEEEECTTHHHHHHHHHHH
T ss_pred -----cCCCEEEEEecHHHHHHHHHHHH
Confidence 12346999999999999888765
No 29
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.56 E-value=2e-15 Score=180.10 Aligned_cols=158 Identities=17% Similarity=0.108 Sum_probs=116.2
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCC-ccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQ-IGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNq-ig~TT 491 (968)
+.+|...|.|+|+++|.+. ..+||++|||+| .+| ++.|+.| +|| +++||.||+ ||+.+
T Consensus 420 g~~G~~l~~A~Gaala~~~---------~~vv~~~GDG~~-~~~--~~~l~~a~~~~lp------~~~vv~nN~~~~~~~ 481 (603)
T 4feg_A 420 ATMGVGIPGAIAAKLNYPE---------RQVFNLAGDGGA-SMT--MQDLATQVQYHLP------VINVVFTNCQYGFIK 481 (603)
T ss_dssp CCTTCHHHHHHHHHHHCTT---------SCEEEEEEHHHH-HHH--GGGHHHHHHTTCC------CEEEEEECSBCHHHH
T ss_pred ccccchhHHHhhHHHhCCC---------CcEEEEeccHHH-hhh--HHHHHHHHHHCcC------eEEEEEECCchHHHH
Confidence 4567778889998888543 358999999995 566 4558877 899 999999996 88722
Q ss_pred ----------CCCcccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe---ecCCCCCCCC
Q psy8742 492 ----------DPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS---YRRNGHNEID 558 (968)
Q Consensus 492 ----------~~~~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~t---YR~~GHne~D 558 (968)
.........++.++|++||+|+++|| +++++..+++.|++ .+.+||+|||+.| ||.-+|...|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~--~~~~gP~lIev~~~~~~~~~~~~~~~ 557 (603)
T 4feg_A 482 DEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA--IAQHEPVLIDAVITGDRPLPAEKLRL 557 (603)
T ss_dssp HHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH--HTTTSCEEEEEECCCCCCCCTTSCCC
T ss_pred HHHHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH--hcCCCcEEEEEEeCCCCCCCcccchh
Confidence 11112234578999999999999998 56666666666642 1678999999999 7777999999
Q ss_pred CCC-CCCHH--HHHHHHhCCCHHHHHHHHHHHccCCCHHHH
Q psy8742 559 EPM-FTQPL--MYKIIKKTPPALDKYANKLIEEKVVTEEQV 596 (968)
Q Consensus 559 dp~-yt~p~--~y~~i~~~~dpi~~y~~~Li~~Gv~t~ee~ 596 (968)
++. |+..+ ++..+++ +||+.+|+++|.++|++++++.
T Consensus 558 ~~~~~~~~~~~~~~~~~~-~d~~~~~~~~l~~~g~~~~~~~ 597 (603)
T 4feg_A 558 DSAMSSAADIEAFKQRYE-AQDLQPLSTYLKQFGLDDLQHQ 597 (603)
T ss_dssp CTTTSCHHHHHHHHHHHT-CTTCCCHHHHHHHTTC------
T ss_pred hhhhhhHHHHHHHHhhCC-cccCCchHHHHHHcCCchhhhh
Confidence 887 65443 5556654 8999999999999999998753
No 30
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=99.45 E-value=4.7e-13 Score=162.96 Aligned_cols=399 Identities=15% Similarity=0.116 Sum_probs=224.4
Q ss_pred CCCCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcch---HHHHHHhCCCCCCCcccEEEEEEcCCcccc
Q psy8742 414 NPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGV---VFETFHLSDLPDYTTHGTIHIVVNNQIGFT 490 (968)
Q Consensus 414 NpShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGv---v~EaLNlA~LP~y~~gGvIfVVeNNqig~T 490 (968)
....||...++|+|+|+. +.+..+.|+.|||. +.+|. ++|+.+++. .|+.|-+|-|+-+|++.|.
T Consensus 173 ~tG~LGqGls~AvG~A~~---------~~~~~v~~~~GDGe-~e~GsLAg~wea~~~~~--~~~l~nl~~i~D~N~~~i~ 240 (845)
T 3ahc_A 173 EGGELGYALSHAYGAVMN---------NPSLFVPCIIGDGE-AETGPLATGWQSNKLVN--PRTDGIVLPILHLNGYKIA 240 (845)
T ss_dssp CCSSTTCHHHHHHHHHTT---------CTTCEEEEEEETTG-GGSHHHHHHGGGGGSCC--TTTSCEEEEEEEECSBSSS
T ss_pred CCCCccchHhHHhhhhhc---------CCCCeEEEEECCCc-hhhhcchhhhHHhhhhh--hhcCCCEEEEEECCCCcCC
Confidence 346799999999999953 23358999999999 89999 888888864 5778889999999999999
Q ss_pred cCCCccc-ccccHhHhhhhcCCcEE-EEeC-C--CHHHHHHHHHHHHHH-----------hhc--CCCc--EEEEEEeec
Q psy8742 491 TDPRFSR-SSSYCTDVARVVNAPIF-HVNS-D--DPEAVIHVCNLAAEW-----------RNT--FHKD--VVIDIVSYR 550 (968)
Q Consensus 491 T~~~~~r-ss~~~td~Ak~~giP~~-hVDG-n--D~eAV~~a~~~Ave~-----------rr~--~~gP--vlIel~tYR 550 (968)
.++..++ +...+.++-++||+.++ .||| + |++++..++..|++. +|+ ..+| .+|-+.|..
T Consensus 241 g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~k 320 (845)
T 3ahc_A 241 NPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPK 320 (845)
T ss_dssp SBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCT
T ss_pred CCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcc
Confidence 8876543 45677889999999998 9999 8 999999998777743 333 3689 999999988
Q ss_pred CC-------CCCCCCCCCCCCHHHHHHHHhCCCHHH----------HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy8742 551 RN-------GHNEIDEPMFTQPLMYKIIKKTPPALD----------KYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVN 613 (968)
Q Consensus 551 ~~-------GHne~Ddp~yt~p~~y~~i~~~~dpi~----------~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~a~~~ 613 (968)
-+ |....+.. +.|.-|+. .+..+|.... .+++=.+..++.++ +..
T Consensus 321 G~tgp~~~~G~~~eg~~-----------~~H~~pl~~~~~~~~~~~~l~~wl~~~~---p~elF~~~~~~~~~----~~~ 382 (845)
T 3ahc_A 321 GWTCPKFIDGKKTEGSW-----------RAHQVPLASARDTEEHFEVLKGWMESYK---PEELFNADGSIKDD----VTA 382 (845)
T ss_dssp TTTSCSEETTEECTTSG-----------GGSSCSCTTTTTCHHHHHHHHHHHHHTC---GGGTBCTTSCBCHH----HHT
T ss_pred cCCCCCCCCCcccCCCc-----------cccCCCCCCcccCHHHHHHHhhhccCCC---chhccCCchHHHHH----HHH
Confidence 88 76432211 11211110 0111110000 00000000000000 000
Q ss_pred HhhccCCCCccccCCCCCCCCCCCCCCccCCCCCCHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHhhhhhchhh
Q psy8742 614 ARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDW 693 (968)
Q Consensus 614 A~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~tgv~~~~l~~i~~~~~~~P~~~~~f~~h~~l~~~l~~r~~~~~~~~idw 693 (968)
. .+ .....+ .. .|. ...|. +-.. ..+|. -..+++- .+.+.+....+.. --=
T Consensus 383 ~--~~--~g~~r~----~~--~P~-----~~~g~-------l~~~-~~lp~-~~~~~~~-~~~~~~~g~~~~~----atr 433 (845)
T 3ahc_A 383 F--MP--KGELRI----GA--NPN-----ANGGV-------IRED-LKLPE-LDQYEVT-GVKEYGHGWGQVE----APR 433 (845)
T ss_dssp T--SC--CGGGST----TT--CGG-----GGGGG-------TCCC-CCCCC-GGGGCCT-HHHHHCTTEEEEC----THH
T ss_pred h--Cc--chHhHh----hh--CHH-----hcCCc-------Cccc-cCCCC-hHhhhcc-ccccccCCccchh----HHH
Confidence 0 00 000000 00 000 00000 0000 02220 0011000 0000000000000 000
Q ss_pred hhhhHhhhhhhhhcCCc-EEEeccccCCCccccccceeeeeccCC---ceee--cCCCCCCCCCCcEeecCCcchHHHHH
Q psy8742 694 ALGEAMAFGSLLKEGIH-VRLSGQDVERGTFSHRHHVLHHQTVDK---ATYR--PLNNLYPDQAPYTVCNSSLSEFGVLG 767 (968)
Q Consensus 694 a~aE~LA~~sLl~eg~~-Vrl~GqDv~rGtFshRHav~~dq~~~~---~~~~--~~~~l~~~~g~~~v~nspLsE~avlG 767 (968)
++.++ ...|.....+ +|+.+-|...-+ |-..+.+. |+. +.|. |.. -...+ ..|+++ -|+|.++.|
T Consensus 434 a~g~~--L~~l~~~~p~~~vv~sADl~~Sn---~t~~f~~~-t~~~~~~~~~~~P~d-~~~~~-~GR~i~-GI~Eh~M~g 504 (845)
T 3ahc_A 434 ALGAY--CRDIIKNNPDSFRIFGPDETASN---RLNATYEV-TDKQWDNGYLSGLVD-EHMAV-TGQVTE-QLSEHQCEG 504 (845)
T ss_dssp HHHHH--HHHHHHHSTTTEEEEESSCTTTT---TCGGGGGT-CCEECCSCCCCTTTC-CSEES-SCSEEE-CSCHHHHHH
T ss_pred HHHHH--HHHHHHhCCCcEEEEecCCCccc---cHHHHHhh-cccccccccccCCcc-cccCC-CCcEee-eecHHHHHH
Confidence 11121 2344556777 999999975422 11111110 000 0011 111 00112 268999 999999999
Q ss_pred HhhhcccCCCCccccccchhhhhHhhhhHHHHH----HHhh-hcccccccc-CcEEEcCc-cC--CCCCcccCCChHHHH
Q psy8742 768 FELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQ----FISS-GQAKWVRQS-GLVMLLPH-GL--EGMGPEHSSARLERF 838 (968)
Q Consensus 768 ~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq----~i~~-~~~kw~~~~-~lv~~lP~-G~--~g~GpeHSs~r~er~ 838 (968)
+..||++.|..+++--=+.|..|+--+ ++| +-.+ ++.-|++.. ++.+++-| |+ .--||.|-.--++..
T Consensus 505 ia~Glal~G~~~f~~t~atFl~~~~~a---~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~ 581 (845)
T 3ahc_A 505 FLEAYLLTGRHGIWSSYESFVHVIDSM---LNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSL 581 (845)
T ss_dssp HHHHHHHTTCEEEEEEEHHHHGGGHHH---HHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHH
T ss_pred HHHHHHhcCCCCceecchhhhchhhhH---HHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHHHH
Confidence 999999999887774345666666777 999 5566 667787655 68888877 33 234788877334444
Q ss_pred hcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHhcCCCCcEEEEeccc
Q psy8742 839 LQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKS 902 (968)
Q Consensus 839 lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~~~~r~Pli~~~pK~ 902 (968)
+-+- .-..+| ||.|+.|+.+.....+++.++... ..|.+++..|.
T Consensus 582 l~~~--r~~~iP----------------n~~V~~PaDanet~~a~~~al~~~-~~~~v~v~sRq 626 (845)
T 3ahc_A 582 LINK--TFNNDH----------------VTNIYFATDANMLLAISEKCFKST-NKINAIFAGKQ 626 (845)
T ss_dssp HGGG--CCTTCC----------------CEEEEECCSHHHHHHHHHHHHHCB-SCEEEEECCCS
T ss_pred HHHh--hccCCC----------------CeEEEeCCCHHHHHHHHHHHHHcC-CCeEEEEecCC
Confidence 4110 000357 999999999999999999999864 14666654543
No 31
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=98.85 E-value=1.8e-09 Score=128.64 Aligned_cols=115 Identities=19% Similarity=0.180 Sum_probs=91.4
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcC-Cccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNN-QIGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNN-qig~TT 491 (968)
+.+|...|.|+|+++|... ..+|++.|||+| ..+ .+.|+.+ +|| +++||.|| +||++.
T Consensus 413 g~mG~~l~~AiGaala~~~---------~~vv~i~GDG~~-~~~--~~~L~ta~~~~l~------~~ivv~NN~~~~~~~ 474 (590)
T 1v5e_A 413 ATMGIAIPGGLGAKNTYPD---------RQVWNIIGDGAF-SMT--YPDVVTNVRYNMP------VINVVFSNTEYAFIK 474 (590)
T ss_dssp CCTTCHHHHHHHHHHHCTT---------SCEEEEEEHHHH-HHH--GGGHHHHHHTTCC------CEEEEEECSSCTTGG
T ss_pred CcccChHHHHHHHHHhCCC---------CeEEEEEechHH-hch--HHHHHHHHHhCCC------CEEEEEECCchHHHH
Confidence 5678899999999999643 258999999996 455 3666665 899 88888888 689886
Q ss_pred CCCcc---------cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecC
Q psy8742 492 DPRFS---------RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRR 551 (968)
Q Consensus 492 ~~~~~---------rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~ 551 (968)
..... ....+...+|++||+++++|+ +++++..+.++|++..|+ +||+|||+.|+|.
T Consensus 475 ~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~gp~liev~~~~~ 540 (590)
T 1v5e_A 475 NKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKA-GHTVVIDCKITQD 540 (590)
T ss_dssp GTTSSSCCSCCCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHT-TCCEEEEEECCSC
T ss_pred HHHHHhcCCCccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCC-CCCEEEEEEeccc
Confidence 42111 123568899999999999997 689999999999987664 7899999999974
No 32
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=98.81 E-value=2.3e-09 Score=128.20 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=91.7
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCC-ccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQ-IGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNq-ig~TT 491 (968)
+++|...|.|+|+++|.+. ..+|++.|||+| ..+ .++|+.+ +|| +++||.||+ ||+++
T Consensus 442 G~~G~~l~~AiGaala~~~---------~~vv~i~GDGs~-~~~--~~~L~ta~~~~l~------~~ivv~NN~~~~~~~ 503 (616)
T 2pan_A 442 GPLGWTIPAALGVCAADPK---------RNVVAISGDFDF-QFL--IEELAVGAQFNIP------YIHVLVNNAYLGLIR 503 (616)
T ss_dssp CCTTCHHHHHHHHHHHCTT---------CEEEEEEEHHHH-HHT--GGGHHHHHHTTCC------CEEEEEECSBCHHHH
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchhh-hCC--HHHHHHHHHhCCC------eEEEEEECCcchHHH
Confidence 5678889999999999643 358999999996 454 3466665 899 988888886 88753
Q ss_pred CC--------------Cc--ccc----cccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecC
Q psy8742 492 DP--------------RF--SRS----SSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRR 551 (968)
Q Consensus 492 ~~--------------~~--~rs----s~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~ 551 (968)
.. .. ... ..+...+|++||+++++|+ |++++..+.++|++++++.++|+|||+.|+|.
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~~~~ 581 (616)
T 2pan_A 504 QSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVILERV 581 (616)
T ss_dssp HHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSC
T ss_pred HHHHHhcCCccccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEeccc
Confidence 21 00 011 1467889999999999996 68899999999998888788999999999985
Q ss_pred C
Q psy8742 552 N 552 (968)
Q Consensus 552 ~ 552 (968)
.
T Consensus 582 ~ 582 (616)
T 2pan_A 582 T 582 (616)
T ss_dssp C
T ss_pred c
Confidence 4
No 33
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=98.78 E-value=1.3e-09 Score=127.92 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=86.2
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCC-ccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQ-IGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNq-ig~TT 491 (968)
+++|...|.|+|+++|.+. ..+|++.|||+| ..| +++|+.+ +|| +++||.||+ ||+++
T Consensus 401 g~~G~~l~~A~G~a~a~~~---------~~vv~~~GDG~~-~~~--~~~l~~a~~~~l~------~~ivv~nN~~~~~~~ 462 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAEPE---------RQVIAVIGDGSA-NYS--ISALWTAAQYNIP------TIFVIMNNGTYGALR 462 (528)
T ss_dssp CCTTSHHHHHHHHHHHCTT---------SCEEEEEEHHHH-TTT--GGGHHHHHHHTCC------CEEEEEECSBCHHHH
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEECCcHH-Hhh--HHHHHHHHHhCCC------eEEEEEeCCcchHhH
Confidence 7889999999999999653 248999999996 566 6778777 899 999998886 88865
Q ss_pred CCCcc----------cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 DPRFS----------RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 ~~~~~----------rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
..... ....+...+|++||+++++|| +++++..+.+.|+ +.++|+|||+.|.|
T Consensus 463 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 525 (528)
T 1q6z_A 463 WFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEAL----SAKGPVLIEVSTVS 525 (528)
T ss_dssp HHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHH----TCSSCEEEEEEBCC
T ss_pred HHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----HCCCcEEEEEEecC
Confidence 32100 123567899999999999998 4566666655554 56899999999976
No 34
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=98.71 E-value=2.9e-09 Score=125.86 Aligned_cols=116 Identities=15% Similarity=0.044 Sum_probs=85.7
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCC-ccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQ-IGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNq-ig~TT 491 (968)
+.+|...|.|+|+++|.+.+ +.+..+||+.|||+| ..+ +.| |+.+ +|| +++||.||+ ||++.
T Consensus 413 g~mG~~l~~A~Gaala~~~~-----~~~~~vv~~~GDG~~-~~~-~~e-l~ta~~~~l~------~~ivv~nN~~~~~~~ 478 (563)
T 2vk8_A 413 GSIGFTTGATLGAAFAAEEI-----DPKKRVILFIGDGSL-QLT-VQE-ISTMIRWGLK------PYLFVLNNDGYTIQK 478 (563)
T ss_dssp CCTTHHHHHHHHHHHHHHHH-----CTTCCEEEEEEHHHH-HHH-GGG-HHHHHHTTCC------CEEEEEESSSCHHHH
T ss_pred hhhhhHHHHHHHHHHhCccc-----CCCCCEEEEEcchHh-hcc-HHH-HHHHHHcCCC------cEEEEEECCcchhhh
Confidence 56788999999999998872 344568999999996 343 444 5554 899 999988886 88864
Q ss_pred CCC----c--ccccccHhHhhhhcCCc---EEEEeCCCHHHHHHHHH-HHHHHhhcCCCcEEEEEEeec
Q psy8742 492 DPR----F--SRSSSYCTDVARVVNAP---IFHVNSDDPEAVIHVCN-LAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 ~~~----~--~rss~~~td~Ak~~giP---~~hVDGnD~eAV~~a~~-~Ave~rr~~~gPvlIel~tYR 550 (968)
... . .....+..++|++||++ +++|| +++++..+.+ .|++ ..++|+|||+.|+|
T Consensus 479 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~---~~~~p~liev~~~~ 542 (563)
T 2vk8_A 479 LIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFN---DNSKIRMIEVMLPV 542 (563)
T ss_dssp HHSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTT---SCSSEEEEEEECCT
T ss_pred hhhCCCCCcccCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHh---CCCCcEEEEEEeCc
Confidence 211 0 11234678899999999 99998 5788877776 5543 34579999999985
No 35
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=98.68 E-value=6.9e-09 Score=122.88 Aligned_cols=112 Identities=15% Similarity=0.119 Sum_probs=84.9
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCC-ccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQ-IGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNq-ig~TT 491 (968)
+.+|...|.|+|+++|.+. ..+||+.|||+| ..+ +. .|+.+ +|| +++||.||+ ||++.
T Consensus 420 g~mG~~l~~AiGaala~~~---------~~vv~i~GDG~~-~~~-~~-~L~ta~~~~l~------~~ivv~nN~~~~~~~ 481 (566)
T 1ozh_A 420 QTMGVALPWAIGAWLVNPE---------RKVVSVSGDGGF-LQS-SM-ELETAVRLKAN------VLHLIWVDNGYNMVA 481 (566)
T ss_dssp CCTTCHHHHHHHHHHHSTT---------SEEEEEEEHHHH-HHH-TT-HHHHHHHHTCC------EEEEEEECSBCHHHH
T ss_pred ccccchHHHHHHHHHhCCC---------CCEEEEEcChHH-hcc-HH-HHHHHHHhCCC------cEEEEEECCchhHHH
Confidence 4568888999999999643 368999999996 443 44 46665 899 999998885 88764
Q ss_pred CCC---------cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecC
Q psy8742 492 DPR---------FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRR 551 (968)
Q Consensus 492 ~~~---------~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~ 551 (968)
... ......+...+|++||+++++|+ +++++..+.++|+ +.+||+|||+.|+|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~~ 544 (566)
T 1ozh_A 482 IQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAM----DVDGPAVVAIPVDYR 544 (566)
T ss_dssp HHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHH----HSSSCEEEEEEBCCT
T ss_pred HHHHHhcCCCccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCCC
Confidence 211 11122568899999999999997 5778877777776 367899999999873
No 36
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=98.67 E-value=7.5e-09 Score=122.70 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=85.7
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCC-ccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQ-IGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNq-ig~TT 491 (968)
+++|...|.|+|+++|.+. ..+|++.|||+| ..+ .++|+.+ +|| +++||.||+ ||++.
T Consensus 436 g~mG~~l~~AiGaa~a~~~---------~~vv~i~GDG~~-~~~--~~~L~~a~~~~l~------~~ivv~NN~~~~~~~ 497 (573)
T 2iht_A 436 SSFGYGIPAAIGAQMARPD---------QPTFLIAGDGGF-HSN--SSDLETIARLNLP------IVTVVVNNDTNGLIE 497 (573)
T ss_dssp CCTTCHHHHHHHHHHHSTT---------SCEEEEEEHHHH-HHT--GGGHHHHHHHTCC------CEEEEEECSBCHHHH
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEccHHH-HhH--HHHHHHHHHhCCC------eEEEEEECCcchhhH
Confidence 5678889999999999653 248999999996 454 3566666 899 888888886 88766
Q ss_pred CC---------C--cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 DP---------R--FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 ~~---------~--~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
.. . ......+...+|++||+++++|+ |++++..+.++|+ +.+||+|||+.|+|
T Consensus 498 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 561 (573)
T 2iht_A 498 LYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGA----ELGRPFLIEVPVNY 561 (573)
T ss_dssp HHHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHH----TSSSCEEEEEEBCC
T ss_pred HHHHHhcCCCcCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEECCC
Confidence 31 0 11123578899999999999996 7888877777775 46899999999998
No 37
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=98.64 E-value=2.1e-08 Score=121.31 Aligned_cols=112 Identities=16% Similarity=0.194 Sum_probs=84.7
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCC-ccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQ-IGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNq-ig~TT 491 (968)
+.+|...|.|+|+++|... ..+||+.|||+| .. .+.| |+.+ +|| +++||.||+ ||+.+
T Consensus 513 G~mG~~lpaAiGaalA~p~---------~~Vv~i~GDGsf-~~-~~~e-L~ta~~~~l~------v~ivV~NN~~~g~~~ 574 (677)
T 1t9b_A 513 GTMGYGLPAAIGAQVAKPE---------SLVIDIDGDASF-NM-TLTE-LSSAVQAGTP------VKILILNNEEQGMVT 574 (677)
T ss_dssp CCTTCHHHHHHHHHHHCTT---------SEEEEEEEHHHH-HH-HGGG-HHHHHHHTCC------CEEEEEECSSCHHHH
T ss_pred chhhchHHHHHHHHHhCCC---------CeEEEEEeehHH-hc-cHHH-HHHHHHhCCC------eEEEEEeCCCchhhh
Confidence 4567788999999999643 469999999996 34 3555 6555 899 888888885 88754
Q ss_pred CCC-----c-----ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecC
Q psy8742 492 DPR-----F-----SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRR 551 (968)
Q Consensus 492 ~~~-----~-----~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~ 551 (968)
... . .....+...+|++||+++++|+ +++++..+.++|++ .++|+|||+.|+|.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~ 638 (677)
T 1t9b_A 575 QWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS----TKGPVLLEVEVDKK 638 (677)
T ss_dssp HHHHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----CSSCEEEEEEBCSS
T ss_pred hhhhhhcCCCcccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHH----CCCcEEEEEEecCC
Confidence 210 0 0123568899999999999995 68888888887764 57899999999984
No 38
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=98.63 E-value=1.5e-08 Score=119.38 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=82.9
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccC
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTD 492 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~ 492 (968)
+++|...|.|+|+++|.+. ..+|++.|||+| ..+ +.|-.+.+ +|| +++||.||+ ||++..
T Consensus 408 g~mG~~l~~A~G~a~a~~~---------~~vv~~~GDG~~-~~~-~~el~ta~~~~l~------~~ivv~nN~~~~~~~~ 470 (552)
T 1ovm_A 408 GSIGYTLAAAFGAQTACPN---------RRVIVLTGDGAA-QLT-IQELGSMLRDKQH------PIILVLNNEGYTVERA 470 (552)
T ss_dssp CCTTHHHHHHHHHHHHCTT---------SCEEEEEEHHHH-HHH-TTHHHHHHHTTCC------CEEEEEESSSCHHHHH
T ss_pred HhhhhHHHHHHHHHHhCCC---------CcEEEEECchHH-HhH-HHHHHHHHHhCCC------CEEEEEECCCCeEEEe
Confidence 5678899999999999643 358999999996 333 44544434 899 899988886 888742
Q ss_pred C----Cc--ccccccHhHhhhhcCC----cEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 493 P----RF--SRSSSYCTDVARVVNA----PIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 493 ~----~~--~rss~~~td~Ak~~gi----P~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
. .. .....+...+|++||+ ++++|+ +++++..+.++| ++.++|+|||+.|++
T Consensus 471 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a----~~~~gp~liev~~~~ 532 (552)
T 1ovm_A 471 IHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKV----AHHERLSLIEVMLPK 532 (552)
T ss_dssp HSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHH----TTCSSEEEEEEECCT
T ss_pred eccCCCCcccCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEcCc
Confidence 1 10 1123567889999999 999997 577777766665 456889999999986
No 39
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=98.62 E-value=2.3e-08 Score=118.27 Aligned_cols=113 Identities=21% Similarity=0.230 Sum_probs=85.7
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcC-Cccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNN-QIGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNN-qig~TT 491 (968)
+++|...|.|+|+++|.+. .+..+||+.|||+| ..+ + ++|+.+ +|| +++||.|| +||++.
T Consensus 419 g~~G~~l~~AiGaa~a~~~-------~~~~vv~i~GDG~~-~~~-~-~~L~ta~~~~l~------~~ivv~nN~~~~~~~ 482 (563)
T 2uz1_A 419 GSMGVGFGTALGAQVADLE-------AGRRTILVTGDGSV-GYS-I-GEFDTLVRKQLP------LIVIIMNNQSWGATL 482 (563)
T ss_dssp CCTTTHHHHHHHHHHHHHH-------HTCEEEEEEEHHHH-GGG-T-THHHHHHHHTCC------CEEEEEECSBCHHHH
T ss_pred ccccChHHHHHHHHHHhhC-------CCCeEEEEEccHHH-hCC-H-HHHHHHHHhCCC------eEEEEEeCCcchHHH
Confidence 4567888999999999851 12368999999996 465 4 456665 899 88888877 588765
Q ss_pred CCC-------ccc----ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 DPR-------FSR----SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 ~~~-------~~r----ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
... ... ...+...+|++||+++++|+ |++++..+.++|++ .+||+|||+.|++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 546 (563)
T 2uz1_A 483 HFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQALA----HNRPACINVAVAL 546 (563)
T ss_dssp HHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----SSSCEEEEEECCS
T ss_pred HHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH----CCCCEEEEEEecc
Confidence 311 100 23568899999999999996 68888888888764 5789999999984
No 40
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=98.61 E-value=1.7e-08 Score=119.45 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=83.0
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCC-ccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQ-IGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNq-ig~TT 491 (968)
+.+|...|.|+|+++|... ..+|++.|||+|. ...+.|+.+ +|| +++||.||+ ||+..
T Consensus 422 g~mG~~l~~A~G~ala~~~---------~~vv~i~GDG~~~---~~~~~l~ta~~~~l~------~~ivv~nN~~~~~~~ 483 (565)
T 2nxw_A 422 AGMGFGVPAGIGAQCVSGG---------KRILTVVGDGAFQ---MTGWELGNCRRLGID------PIVILFNNASWEMLR 483 (565)
T ss_dssp CCTTCHHHHHHHHHHHTTT---------CCEEEEEEHHHHH---HHGGGGGGHHHHTCC------CEEEEEECSBCHHHH
T ss_pred ccccccchHHHHHHHhCCC---------CcEEEEEechHHH---hhHHHHHHHHHhCCC------CEEEEEECCCCcEEe
Confidence 4568889999999999643 2479999999973 334455554 899 888888885 88754
Q ss_pred CCC-----cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcE-EEEEEeec
Q psy8742 492 DPR-----FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDV-VIDIVSYR 550 (968)
Q Consensus 492 ~~~-----~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPv-lIel~tYR 550 (968)
... ......+...+|++||+++++|+ +++++..+.++|++ .++|+ |||+.|+|
T Consensus 484 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~~liev~~~~ 542 (565)
T 2nxw_A 484 TFQPESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFA----TRGRFQLIEAMIPR 542 (565)
T ss_dssp HHCTTCGGGBCCCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHH----CCSSCEEEEEECCT
T ss_pred eecccCCCCcCCCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHh----cCCCeEEEEEEccc
Confidence 211 11123567899999999999997 68888888887764 46888 99999986
No 41
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=98.60 E-value=1.7e-08 Score=119.43 Aligned_cols=112 Identities=18% Similarity=0.162 Sum_probs=84.6
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcC-Cccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNN-QIGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNN-qig~TT 491 (968)
+.+|...|.|+|+++|.+. ..+|++.|||+| .. .+.| |+.+ ++| +++||.|| +||++.
T Consensus 409 g~mG~~l~~A~G~ala~~~---------~~vv~~~GDG~~-~~-~~~e-L~ta~~~~l~------~~ivv~nN~~~~~~~ 470 (566)
T 2vbi_A 409 GHIGWSVPSAFGNAMGSQD---------RQHVVMVGDGSF-QL-TAQE-VAQMVRYELP------VIIFLINNRGYVIEI 470 (566)
T ss_dssp CCTTTHHHHHHHHHHTCTT---------SEEEEEEEHHHH-HH-HGGG-HHHHHHTTCC------CEEEEEECSSCHHHH
T ss_pred cchhhHHHHHHHHHHhCCC---------CcEEEEEcchHH-Hh-hHHH-HHHHHHhCCC------cEEEEEECCcceEEE
Confidence 4568889999999998643 358999999996 34 3444 6665 899 88888777 688876
Q ss_pred CCCc----ccccccHhHhhhhcCC-----cEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 DPRF----SRSSSYCTDVARVVNA-----PIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 ~~~~----~rss~~~td~Ak~~gi-----P~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
.... .....+...+|++||+ ++++|+ +++++..+.++|++.. +||+|||+.|+|
T Consensus 471 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~~~---~gp~liev~~~~ 533 (566)
T 2vbi_A 471 AIHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKANT---RGPTLIECQIDR 533 (566)
T ss_dssp TTSCCGGGCCCCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHHCC---SSCEEEEEECCT
T ss_pred eeccCCccCCCCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHhcC---CCcEEEEEEeCc
Confidence 4321 1123467889999999 999997 6888888888776421 789999999986
No 42
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=98.58 E-value=8.8e-09 Score=122.55 Aligned_cols=113 Identities=21% Similarity=0.192 Sum_probs=85.8
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCC-ccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQ-IGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNq-ig~TT 491 (968)
+.+|...|.|+|+++|.+. ..+||+.|||+| ..+ .++|+.+ +|| +++||.||+ ||++.
T Consensus 424 g~mG~~l~~AiGaala~~~---------~~vv~i~GDG~~-~~~--~~~L~ta~~~~l~------~~ivv~nN~~~~~~~ 485 (589)
T 2pgn_A 424 GILGCGFPMALGAQLAEPN---------SRVFLGTGDGAL-YYH--FNEFRVAVEHKLP------VITMVFTNESYGANW 485 (589)
T ss_dssp CCTTCHHHHHHHHHHHCTT---------SCEEEEEEHHHH-HHH--GGGHHHHHHTTCC------CEEEEEECSBCHHHH
T ss_pred chhhhHHHHHHHHHHhCCC---------CcEEEEEeeHHH-Hhh--HHHHHHHHHhCCC------eEEEEEECCCcccch
Confidence 4568888999999999653 248999999996 455 3667766 899 888888886 88765
Q ss_pred CCC---------cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCC
Q psy8742 492 DPR---------FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRN 552 (968)
Q Consensus 492 ~~~---------~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~ 552 (968)
... ......+...+|++||+++++|+ +++++..+.++|++ .++|+|||+.|+|..
T Consensus 486 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~~ 549 (589)
T 2pgn_A 486 TLMNHQFGQNNWTEFMNPDWVGIAKAFGAYGESVR--ETGDIAGALQRAID----SGKPALIEIPVSKTQ 549 (589)
T ss_dssp HHHHHHHSSCCSCBCCCCCHHHHHHHHTCEEEECT--TTCCHHHHHHHHHH----HCSCEEEEEECCSSS
T ss_pred HHHHhhcCCCccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC
Confidence 321 11123578899999999999997 46677777777764 478999999998753
No 43
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=98.57 E-value=3e-08 Score=117.42 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=83.4
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcC-Cccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNN-QIGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNN-qig~TT 491 (968)
+.+|...|.|+|+++|.+. ..+|++.|||+| .. .+.| |+.+ +|| +++||.|| +||++.
T Consensus 425 g~mG~~l~~A~Gaala~~~---------~~vv~~~GDG~~-~~-~~~e-L~ta~~~~l~------~~ivv~nN~~~~~~~ 486 (570)
T 2vbf_A 425 GSIGYTFPAALGSQIADKE---------SRHLLFIGDGSL-QL-TVQE-LGLSIREKLN------PICFIINNDGYTVER 486 (570)
T ss_dssp CCTTTHHHHHHHHHHHCTT---------SEEEEEEEHHHH-HH-HGGG-HHHHHHTTCC------CEEEEEESSSCHHHH
T ss_pred hhhhhhHHHHHHHHHhCCC---------CcEEEEEcchhh-hc-CHHH-HHHHHHcCCC------CEEEEEECCchHHHH
Confidence 4578899999999999643 368999999996 44 3444 6655 899 88888877 688765
Q ss_pred CCC---c---ccccccHhHhhhhcCCc-----EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 DPR---F---SRSSSYCTDVARVVNAP-----IFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 ~~~---~---~rss~~~td~Ak~~giP-----~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
... . .....+..++|++||++ +++|+ +++++..+.++| +++.++|+|||+.|+|
T Consensus 487 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a---~~~~~~p~liev~~~~ 551 (570)
T 2vbf_A 487 EIHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEA---QADVNRMYWIELVLEK 551 (570)
T ss_dssp HHSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHH---HHCTTSEEEEEEECCT
T ss_pred HHhccCCCccCCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHH---HhcCCCcEEEEEEcCc
Confidence 211 0 01224678899999999 89996 588887777764 2456789999999987
No 44
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=98.56 E-value=3.6e-08 Score=117.27 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=84.9
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcC-Cccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNN-QIGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNN-qig~TT 491 (968)
+++|...|.|+|+++|.+. ..+||+.|||+| ..+ + ++|+.+ +|| +++||.|| +||++.
T Consensus 426 G~~G~~l~~AiGaala~~~---------~~vv~i~GDGs~-~~~-~-~~L~ta~~~~l~------~~ivv~NN~~~~~~~ 487 (590)
T 1ybh_A 426 GAMGFGLPAAIGASVANPD---------AIVVDIDGDGSF-IMN-V-QELATIRVENLP------VKVLLLNNQHLGMVM 487 (590)
T ss_dssp CCTTCHHHHHHHHHHHCTT---------SCEEEEEEHHHH-HHT-T-THHHHHHHTTCC------EEEEEEECSBCHHHH
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEccchh-hcc-H-HHHHHHHHhCCC------cEEEEEECCcchHHH
Confidence 5678888999999999653 258999999996 444 3 456655 899 88888888 577753
Q ss_pred CC-----------Cc-cc------ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCC
Q psy8742 492 DP-----------RF-SR------SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRN 552 (968)
Q Consensus 492 ~~-----------~~-~r------ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~ 552 (968)
.. .. .. ...+...+|++||+++++|+ +++++..+.++|++ .+||+|||+.|+|..
T Consensus 488 ~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~~ 560 (590)
T 1ybh_A 488 QWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLD----TPGPYLLDVICPHQE 560 (590)
T ss_dssp HHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHH----SSSCEEEEEECCTTC
T ss_pred HHHHHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCc
Confidence 11 00 01 13467899999999999997 68888888877764 478999999999854
No 45
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=98.54 E-value=3.5e-08 Score=116.73 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=84.5
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcC-Cccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNN-QIGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNN-qig~TT 491 (968)
+.+|...|.|+|+++|... ..+|++.|||+| .. .+.| |+.+ ++| +++||.|| +||++.
T Consensus 413 g~~G~~l~~A~G~ala~~~---------~~vv~i~GDGs~-~~-~~~e-l~ta~~~~l~------~~ivv~NN~~~~~~~ 474 (568)
T 2wvg_A 413 GHIGWSVPAAFGYAVGAPE---------RRNILMVGDGSF-QL-TAQE-VAQMVRLKLP------VIIFLINNYGYTIEV 474 (568)
T ss_dssp CCTTTHHHHHHHHHHHCTT---------SEEEEEEEHHHH-HH-HGGG-HHHHHHTTCC------CEEEEEECSSCHHHH
T ss_pred chhhhHHHHHHHHHHhCCC---------CcEEEEEcChhH-hc-cHHH-HHHHHHcCCC------cEEEEEECCcceEee
Confidence 4578889999999999643 368999999996 34 4555 5444 899 87777766 688876
Q ss_pred CCCc----ccccccHhHhhhhcCC---------cEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 492 DPRF----SRSSSYCTDVARVVNA---------PIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 492 ~~~~----~rss~~~td~Ak~~gi---------P~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
.... .....+...+|++||+ ++++|+ +++++..+.++|++. .+||+|||+.|+|
T Consensus 475 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~ 541 (568)
T 2wvg_A 475 MIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN---TDGPTLIECFIGR 541 (568)
T ss_dssp TTSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred eeccCCCcCCCCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence 4321 1122467889999999 899996 688888888888753 2789999999987
No 46
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=98.49 E-value=8.8e-08 Score=112.96 Aligned_cols=112 Identities=19% Similarity=0.243 Sum_probs=80.3
Q ss_pred CCccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCC-ccccc
Q psy8742 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQ-IGFTT 491 (968)
Q Consensus 416 ShLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNq-ig~TT 491 (968)
+.+|...|.|+|+++|... ..+|++.|||+| ..+ + +.|+.+ +|| +++||.||+ ||+.+
T Consensus 406 g~mG~~l~~AiGaala~~~---------~~vv~i~GDGs~-~~~-~-~~L~ta~~~~l~------~~ivv~nN~~~g~~~ 467 (549)
T 3eya_A 406 GSMANAMPQALGAQATEPE---------RQVVAMCGDGGF-SML-M-GDFLSVVQMKLP------VKIVVFNNSVLGFVA 467 (549)
T ss_dssp CCTTCHHHHHHHHHHHSTT---------SCEEEEEEHHHH-HHT-G-GGHHHHHHTTCC------CEEEEEECSBCCCC-
T ss_pred chhhhHHHHHHHHHHhCCC---------CcEEEEEccchh-hcc-H-HHHHHHHHhCCC------eEEEEEeCCccHHHH
Confidence 4557778999999998643 248999999996 333 3 345544 899 888888775 78754
Q ss_pred CCCc---------ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecC
Q psy8742 492 DPRF---------SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRR 551 (968)
Q Consensus 492 ~~~~---------~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~ 551 (968)
.... .....+...+|++||+++++|+ |++++..+.+.|+ +.+||+|||+.|.|.
T Consensus 468 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~~ 530 (549)
T 3eya_A 468 MEMKAGGYLTDGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAF----SIDGPVLVDVVVAKE 530 (549)
T ss_dssp -----------CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHH----HSSSCEEEEEEBCCC
T ss_pred HHHHhcCCCCcCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeccc
Confidence 2110 1123567899999999999995 6777777777765 457899999999874
No 47
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=98.48 E-value=6.7e-08 Score=114.22 Aligned_cols=106 Identities=16% Similarity=0.059 Sum_probs=73.8
Q ss_pred cccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCc-ccccCC-
Q psy8742 419 EAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQI-GFTTDP- 493 (968)
Q Consensus 419 ea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqi-g~TT~~- 493 (968)
|. .|.|+|+++| .. ..+||+.|||+| +-.+.| |+.+ ++| +++||.||+. |+....
T Consensus 420 G~-l~~A~Gaa~a-~~---------~~vv~i~GDGsf--~~~~~e-L~ta~~~~lp------v~ivv~NN~~~~~~~~~~ 479 (556)
T 3hww_A 420 GL-LSTAAGVQRA-SG---------KPTLAIVGDLSA--LYDLNA-LALLRQVSAP------LVLIVVNNNGGQIFSLLP 479 (556)
T ss_dssp SH-HHHHHHHHHH-HC---------CCEEEEEEHHHH--HHTGGG-HHHHTTCSSC------EEEEEEESCC--------
T ss_pred cH-HHHHHHHHhc-CC---------CcEEEEEccHHh--hhcchh-hHhhcccCCC------cEEEEEECCCCCcccCCC
Confidence 44 7999999998 22 248999999997 333444 4433 899 9999999984 554210
Q ss_pred ------C---cccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 494 ------R---FSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 494 ------~---~~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
. ......+...+|++||+++++|+ +++++..+.++| ++.+||+|||+.|.|
T Consensus 480 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a----~~~~gp~liev~~~~ 539 (556)
T 3hww_A 480 TPQSERERFYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETAFADA----WRTPTTTVIEMVVND 539 (556)
T ss_dssp ---------CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHHHHHH----TTSSSEEEEEEECCS
T ss_pred CcchhHHHhccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHHHHHH----HhCCCCEEEEEECCc
Confidence 0 11123567899999999999997 566666555554 467899999999875
No 48
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=98.47 E-value=1.6e-07 Score=111.09 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=81.3
Q ss_pred CccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-c-ccccC
Q psy8742 417 HLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-I-GFTTD 492 (968)
Q Consensus 417 hLea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-i-g~TT~ 492 (968)
.+|...|.|+|+++| .. ..+|++.|||+| .. .+.|-...+ +|| +++||.||+ | ++...
T Consensus 422 ~~G~~l~~AiGaa~a-~~---------~~vv~i~GDGsf-~~-~~~el~ta~~~~l~------~~ivv~NN~~~~~~~~~ 483 (564)
T 2q28_A 422 VMGIGMGYAIGASVT-SG---------SPVVAIEGDSAF-GF-SGMEIETICRYNLP------VTIVIFNNGGIYRGDGV 483 (564)
T ss_dssp CTTCHHHHHHHHHHH-HC---------SCEEEEEEHHHH-HT-TGGGHHHHHHTTCC------EEEEEEECSBSSCSCCC
T ss_pred cccchHHHHHHHhhc-CC---------CcEEEEEcchHh-hc-cHHHHHHHHHhCCC------eEEEEEeCchhHHHHHH
Confidence 457778999999998 32 248999999997 23 344433333 899 999999998 3 44321
Q ss_pred C--Cc-------ccccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCC
Q psy8742 493 P--RF-------SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRN 552 (968)
Q Consensus 493 ~--~~-------~rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~ 552 (968)
. .. .....+...+|++||+++++|+ +++++..+.++|++ .++|+|||+.|.|..
T Consensus 484 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~ 546 (564)
T 2q28_A 484 DLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGIQ----SRKPTIINVVIDPAA 546 (564)
T ss_dssp CTTSSCCCCTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCTTS
T ss_pred HHhccCCccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecccc
Confidence 1 00 0113567889999999999996 68888888888863 478999999998753
No 49
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=98.46 E-value=8.7e-08 Score=108.97 Aligned_cols=121 Identities=13% Similarity=0.148 Sum_probs=81.3
Q ss_pred cEeecCCcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHhhhccccccccCcEEEcCccC-CC----CC
Q psy8742 753 YTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGL-EG----MG 827 (968)
Q Consensus 753 ~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~~~~~kw~~~~~lv~~lP~G~-~g----~G 827 (968)
.+++.+. +|.+.+|+++|+|+.|.|+++ +.++.+|.+ + +||+.+.+ +...|+||+.+.+. .+ ..
T Consensus 65 ~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~--~ts~~G~~~-~---~d~l~~aa----~~~~P~Vi~~~~~~~~~~g~~~~ 133 (395)
T 1yd7_A 65 GVVIQME-DEIASIAAAIGASWAGAKAMT--ATSGPGFSL-M---QENIGYAV----MTETPVVIVDVQRSGPSTGQPTL 133 (395)
T ss_dssp CEEEECS-CHHHHHHHHHHHHHTTCCEEE--EEETTHHHH-H---TTTCC--------CCCCEEEEEEC-----------
T ss_pred cEEEEeC-CHHHHHHHHHHHHHhCCcEEE--EeCchHHHH-H---HHHHHHHH----hcCCCEEEEEeeCCCCCCCCCcc
Confidence 5677777 999999999999999999766 999998877 5 89987654 44689999998754 32 34
Q ss_pred cccCCChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHh--cCCCCcEEEEecccCcC
Q psy8742 828 PEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIA--LPFRKPLVLMTPKSLLR 905 (968)
Q Consensus 828 peHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~--~~~r~Pli~~~pK~Llr 905 (968)
++||+. ++.++ .+.| +.|+.|+.|+||.+++++++.++. ..++.||++++|+.|..
T Consensus 134 ~~~sd~-~~~~~-------~~~g--------------~~g~~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~~~~l~h 191 (395)
T 1yd7_A 134 PAQGDI-MQAIW-------GTHG--------------DHSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTDAEVGH 191 (395)
T ss_dssp -------------------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEECHHHHH
T ss_pred cchhHH-HHHHh-------ccCC--------------CcceEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEcchhHhC
Confidence 678876 66554 2332 238999999999999999999983 22349999999988754
Q ss_pred C
Q psy8742 906 H 906 (968)
Q Consensus 906 ~ 906 (968)
.
T Consensus 192 ~ 192 (395)
T 1yd7_A 192 M 192 (395)
T ss_dssp C
T ss_pred e
Confidence 3
No 50
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=98.43 E-value=2e-07 Score=110.30 Aligned_cols=109 Identities=16% Similarity=0.092 Sum_probs=80.3
Q ss_pred ccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCCc--ccccC
Q psy8742 418 LEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQI--GFTTD 492 (968)
Q Consensus 418 Lea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNqi--g~TT~ 492 (968)
+|...|.|+|+++| .. ..+|++.|||+| .. .+.| |+.+ +|| +++||.||+. ++...
T Consensus 428 ~G~~l~~AiGaala-~~---------~~vv~i~GDGsf-~~-~~~e-l~ta~~~~l~------~~ivv~NN~~~~~~~~~ 488 (568)
T 2c31_A 428 MGIGMGYCVAAAAV-TG---------KPVIAVEGDSAF-GF-SGME-LETICRYNLP------VTVIIMNNGGIYKGNEA 488 (568)
T ss_dssp SSCHHHHHHHHHHH-HC---------SCEEEEEEHHHH-HT-TGGG-HHHHHHTTCC------EEEEEEESSBSSCSCCC
T ss_pred ccccHHHHHHHHhC-CC---------CcEEEEEcchHh-hc-cHHH-HHHHHHhCCC------eEEEEEeCchhHHHHHH
Confidence 46778999999998 32 248999999997 22 2334 4444 899 9999999983 33321
Q ss_pred C---Ccc----cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecC
Q psy8742 493 P---RFS----RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRR 551 (968)
Q Consensus 493 ~---~~~----rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~ 551 (968)
. .+. ....+...+|++||+++++|+ +++++..+.++|++ .++|+|||+.|+|.
T Consensus 489 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~ 548 (568)
T 2c31_A 489 DPQPGVISCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDPD 548 (568)
T ss_dssp CSBTTBCCTTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHHH----HTSCEEEEEEBCTT
T ss_pred HhhcCCcccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeccc
Confidence 1 000 223567899999999999996 78898888888873 47899999999874
No 51
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=98.41 E-value=5.2e-08 Score=116.22 Aligned_cols=108 Identities=17% Similarity=0.086 Sum_probs=79.4
Q ss_pred ccccCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcC-CcccccCC
Q psy8742 418 LEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNN-QIGFTTDP 493 (968)
Q Consensus 418 Lea~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNN-qig~TT~~ 493 (968)
+|...|.|+|+++|. . ..+||+.|||+| ..+ +.| |+.+ +|| +++||.|| +||+....
T Consensus 457 ig~~l~~AiGaala~-~---------~~vv~i~GDGsf-~~~-~~e-L~ta~~~~lp------~~ivv~NN~~~~i~~~~ 517 (604)
T 2x7j_A 457 IDGVVSSAMGVCEGT-K---------APVTLVIGDLSF-YHD-LNG-LLAAKKLGIP------LTVILVNNDGGGIFSFL 517 (604)
T ss_dssp SSSHHHHHHHHHHHH-T---------SCEEEEEEHHHH-HHT-GGG-GHHHHHHCCC------EEEEEEECSSCGGGGGS
T ss_pred cCcHHHHHHHHHhcC-C---------CcEEEEEccHHH-HhH-HHH-HHHhhhcCCC------eEEEEEeCCCCcccccC
Confidence 466789999999993 2 248999999996 444 455 6666 899 88888777 68875421
Q ss_pred C-cc-----------cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 494 R-FS-----------RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 494 ~-~~-----------rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
. .+ ....+...+|++||+++++|+ +++++..+.++|+ +.++|+|||+.|+|
T Consensus 518 ~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~ 580 (604)
T 2x7j_A 518 PQASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQA----DKPGLHLIEIKTDR 580 (604)
T ss_dssp GGGSCHHHHHHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCC----SSCCEEEEEEECCH
T ss_pred CCCccchhhHhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCc
Confidence 1 00 112467889999999999997 5777766666554 56899999999875
No 52
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=98.30 E-value=3.4e-07 Score=108.70 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=68.1
Q ss_pred cCchhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhC---CCCCCCcccEEEEEEcCC-cccccCC-Cc
Q psy8742 421 VDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQ-IGFTTDP-RF 495 (968)
Q Consensus 421 ~~PvA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA---~LP~y~~gGvIfVVeNNq-ig~TT~~-~~ 495 (968)
..|.|+|++++ +..+||+.|||+| +-.+.| |+.+ +|| +++||.||+ ||+.... ..
T Consensus 441 ~l~~AiGaa~~-----------~~~vv~i~GDGsf--~~~~~e-L~ta~~~~l~------~~ivv~NN~~~g~~~~~~~~ 500 (578)
T 3lq1_A 441 VVSSALGASVV-----------FQPMFLLIGDLSF--YHDMNG-LLMAKKYKMN------LTIVIVNNDGGGIFSFLPQA 500 (578)
T ss_dssp HHHHHHHHTTT-----------SSSEEEEEEHHHH--HHTGGG-GHHHHHTTCC------EEEEEECCC-----------
T ss_pred HHHHHHHHhcC-----------CCCEEEEEchHHH--HhhHHH-HHhhccCCCC------eEEEEEECCcCccccccccc
Confidence 46889998643 1248999999997 333344 4444 899 999999994 6765421 00
Q ss_pred c-----------cccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 496 S-----------RSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 496 ~-----------rss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
+ ....+...+|++||+++++|+ +++++..+.++|+ +.+||+|||+.|.|
T Consensus 501 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~ 560 (578)
T 3lq1_A 501 NEPKYFESLFGTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKAS----YHKGLDIIEVKTNR 560 (578)
T ss_dssp --------------CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHHT----TSSSEEEEEEC---
T ss_pred cccchhhhhccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCc
Confidence 0 012467889999999999996 7888776666664 46899999999876
No 53
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=97.81 E-value=2.2e-05 Score=100.58 Aligned_cols=124 Identities=11% Similarity=-0.006 Sum_probs=93.2
Q ss_pred CCCCCCCCcEeecCCcchHHHHHHhhhcccCCCCccccccchhhhhHhhhhHHHHHHHh-hhccccccccCcEEEcCccC
Q psy8742 745 NLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFIS-SGQAKWVRQSGLVMLLPHGL 823 (968)
Q Consensus 745 ~l~~~~g~~~v~nspLsE~avlG~~~G~s~~g~~~l~iWE~qfgDF~~~aQvi~Dq~i~-~~~~kw~~~~~lv~~lP~G~ 823 (968)
++...||..+++..+.||.+.+|..+|+|+.|.|+++ ..-..-|. +|++.+.. ++ ...|+||..+.+.
T Consensus 46 g~~~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~t--~Ts~~Gl~----lm~e~l~~~ag-----~~~P~Vi~va~R~ 114 (1231)
T 2c42_A 46 GRKNIFGQTLTIREMQSEAGAAGAVHGALAAGALTTT--FTASQGLL----LMIPNMYKISG-----ELLPGVFHVTARA 114 (1231)
T ss_dssp TCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEEE--EECHHHHH----HHHHHHHHHHH-----TTCCCEEEEEECC
T ss_pred CCchhcCCceEEEecCChHHHHHHHHHHHHcCChHhh--hccHHHHH----HHHHHHHHHhC-----CCCCEEEEECCCC
Confidence 4555688889999999999999999999999999999 43222222 23455532 22 2579999998744
Q ss_pred -CCC----CcccCCChHHHHhcccCCCCcccccccchhhhhhhcccCCCeEEEecCCHhHHHHHHHHHHh--cCCCCcEE
Q psy8742 824 -EGM----GPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIA--LPFRKPLV 896 (968)
Q Consensus 824 -~g~----GpeHSs~r~er~lql~~~~~~~~p~~~~~~~~~~~~~~~~n~~V~~pstpa~~~hlLr~q~~--~~~r~Pli 896 (968)
.+. .++||+. + . .+.+ ||.|+.|+||.++|+++..+.. ..++.|||
T Consensus 115 g~~~glsi~~~hsd~-~---~-------ar~~----------------G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi 167 (1231)
T 2c42_A 115 IAAHALSIFGDHQDI-Y---A-------ARQT----------------GFAMLASSSVQEAHDMALVAHLAAIESNVPFM 167 (1231)
T ss_dssp CCSSSBCCSCCSHHH-H---T-------TTTS----------------SCEEEECCSHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred ccCCCCcCCCchhhH-H---H-------HhcC----------------CcEEEECCCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 332 3788874 2 2 2334 9999999999999999999832 34679999
Q ss_pred EEecccCcCC
Q psy8742 897 LMTPKSLLRH 906 (968)
Q Consensus 897 ~~~pK~Llr~ 906 (968)
+++.+.++.|
T Consensus 168 ~~~Dg~~~sh 177 (1231)
T 2c42_A 168 HFFDGFRTSH 177 (1231)
T ss_dssp EEEETTTTTT
T ss_pred EEecCccccc
Confidence 9999988876
No 54
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=96.55 E-value=0.005 Score=79.14 Aligned_cols=95 Identities=9% Similarity=-0.031 Sum_probs=69.5
Q ss_pred EEEEEEeCCc-cccCcchHHHHHHhC--CCCCCCcccEEEEEEcCC-cccccCCC------ccc----------ccccHh
Q psy8742 444 VMSILLHGDA-AFCGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQ-IGFTTDPR------FSR----------SSSYCT 503 (968)
Q Consensus 444 ~v~v~~hGDg-AfsgQGvv~EaLNlA--~LP~y~~gGvIfVVeNNq-ig~TT~~~------~~r----------ss~~~t 503 (968)
.-+|++.||| +| +=-+.|-.+.+ ++| +++||.||+ ||+|--.. ... ...++.
T Consensus 954 ~~Vv~i~GDG~~~--~mg~~eL~ta~~~~~~------v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~ 1025 (1231)
T 2c42_A 954 KSVWIFGGDGWAY--DIGYGGLDHVLASGED------VNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLA 1025 (1231)
T ss_dssp CEEEEEEEHHHHH--TTTHHHHHHHHHTTCS------CEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHH
T ss_pred CcEEEEeCcHHHH--HcchHHHHHHHHhCCC------eEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHH
Confidence 5799999999 54 33355666655 899 999999997 46553100 000 124688
Q ss_pred HhhhhcCCcEEEE-eC-CCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q psy8742 504 DVARVVNAPIFHV-NS-DDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550 (968)
Q Consensus 504 d~Ak~~giP~~hV-DG-nD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR 550 (968)
.+|++||++.+.+ .- .|++.+..++++|++ .+||+|||+.+--
T Consensus 1026 ~iA~a~G~~~va~~~v~~~~~~l~~al~eAl~----~~GP~lI~v~~~c 1070 (1231)
T 2c42_A 1026 RMVMTYGYVYVATVSMGYSKQQFLKVLKEAES----FPGPSLVIAYATC 1070 (1231)
T ss_dssp HHHHTTSSSEEEEECTTTCHHHHHHHHHHHHH----SSSCEEEEEECCC
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHHHHHHh----cCCCEEEEEeecC
Confidence 8999999999965 44 599999999999985 4799999998633
No 55
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=70.11 E-value=7 Score=45.94 Aligned_cols=106 Identities=9% Similarity=0.027 Sum_probs=66.2
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. ++..++++..|=|+.-.-.-++|+. ++++| +|+|+-+-.....-.. ....+.+..
T Consensus 63 ~A~Gyar~t--------g~p~v~~~TsGpG~~N~~~~v~~A~-~~~~P------ll~itg~~~~~~~~~~-~~~Q~~d~~ 126 (573)
T 2iht_A 63 AADVLARIT--------GRPQACWATLGPGMTNLSTGIATSV-LDRSP------VIALAAQSESHDIFPN-DTHQCLDSV 126 (573)
T ss_dssp HHHHHHHHH--------CSCEEEEECTTHHHHHHHHHHHHHH-HHTCC------EEEEEEESCGGGCCTT-TSTTCCCHH
T ss_pred HHHHHHHHH--------CCCEEEEEccCchHHHHHHHHHHHH-hhCCC------EEEEcccCcccccCCc-CccccCCHH
Confidence 455666553 4457778877877733334445552 45899 9999876543221110 111112344
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
.+.+.+---...| .+++.+...+++|+..+..++ |||.|++=
T Consensus 127 ~~~~~~~k~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (573)
T 2iht_A 127 AIVAPMSKYAVEL--QRPHEITDLVDSAVNAAMTEPVGPSFISLP 169 (573)
T ss_dssp HHHGGGSSEEEEC--CSGGGHHHHHHHHHHHHTBSSCCCEEEEEE
T ss_pred HHHHhHhhEEEEc--CCHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 5555554445555 588889999999999999887 99999874
No 56
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=70.00 E-value=12 Score=43.99 Aligned_cols=104 Identities=12% Similarity=0.037 Sum_probs=67.9
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCC-CcccccccH
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDP-RFSRSSSYC 502 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~-~~~rss~~~ 502 (968)
.|.|.||+. ++..++++..|=|+.-.-.-++|+. ++++| +|+|+-+-.....-.. ..| ..+.
T Consensus 58 ~A~GyAr~t--------g~p~v~~~TsGpG~~N~~~gv~~A~-~~~vP------ll~itg~~~~~~~~~~~~~Q--~~d~ 120 (589)
T 2pgn_A 58 MVNGYNYVK--------DRSAAVGAWHCVGNLLLHAAMQEAR-TGRIP------AVHIGLNSDGRLAGRSEAAQ--QVPW 120 (589)
T ss_dssp HHHHHHHHH--------TSCCEEEEEEGGGGGGCHHHHHHHH-HTTCC------EEEEEEESCGGGTTCTTCSS--CCCG
T ss_pred HHHHHHHHH--------CCCEEEEEecCchHHHHHHHHHHHH-hcCCC------EEEEecCCcccccCCCCccc--ccCh
Confidence 466777653 4457899999999965556666666 57999 9999876543221110 011 1122
Q ss_pred hHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 503 TDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 503 td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
.. .+ .+--..+.=.+++.+...+.+|+..+..++ |||.|++=
T Consensus 121 ~~-~~--~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 163 (589)
T 2pgn_A 121 QS-FT--PIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIP 163 (589)
T ss_dssp GG-GT--TTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEE
T ss_pred hh-cc--ccEEEEeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeC
Confidence 22 33 233334444688999999999999999887 99999873
No 57
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=69.67 E-value=8.3 Score=45.48 Aligned_cols=105 Identities=17% Similarity=0.164 Sum_probs=65.8
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. ++..++++..|=|+.-.-.-++|+. ++++| +|+|+-.-....--. ......+..
T Consensus 65 ~A~Gyar~t--------g~p~v~~~TsGpG~~N~~~gv~~A~-~~~vP------ll~itg~~~~~~~g~--~~~Q~~d~~ 127 (590)
T 1ybh_A 65 AAEGYARSS--------GKPGICIATSGPGATNLVSGLADAL-LDSVP------LVAITGQVPRRMIGT--DAFQETPIV 127 (590)
T ss_dssp HHHHHHHHH--------SSCEEEEECTTHHHHTTHHHHHHHH-HHTCC------EEEEEEECCGGGTTT--TCTTCCCHH
T ss_pred HHHHHHHHH--------CCCEEEEeccCchHHHHHHHHHHHH-hhCCC------EEEEeCcCCccccCC--CcccccCHH
Confidence 466766653 3457778888877743333344443 34999 999987643221111 111112344
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
.+.+.+---...| .+++.+..++++|+..++.++ |||+|++=
T Consensus 128 ~~~~~~~k~~~~v--~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP 170 (590)
T 1ybh_A 128 EVTRSITKHNYLV--MDVEDIPRIIEEAFFLATSGRPGPVLVDVP 170 (590)
T ss_dssp HHHGGGSSEEEEC--CCGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHhCeEEec--CCHHHHHHHHHHHHHHHhhCCCceEEEEeC
Confidence 5555554445555 588999999999999998886 89999883
No 58
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=69.42 E-value=9.6 Score=44.63 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=69.0
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. ++..++++..|=|+.-.-.-++|+ .++++| +|+|+-+-.....-....|.. .+..
T Consensus 56 ~A~Gyar~t--------g~p~v~~~TsGpG~~N~~~~l~~A-~~~~~P------ll~itg~~~~~~~~~~~~Q~~-~d~~ 119 (563)
T 2uz1_A 56 AAEGYARAG--------AKLGVALVTAGGGFTNAVTPIANA-WLDRTP------VLFLTGSGALRDDETNTLQAG-IDQV 119 (563)
T ss_dssp HHHHHHHHH--------TSCEEEEECTTHHHHTTHHHHHHH-HHHTCC------EEEEEEECCGGGTTSCCTTCC-CCHH
T ss_pred HHHHHHHHh--------CCCEEEEEccCccHHHHHHHHHHH-HhcCCC------EEEEeCCCCcccCCchhhhhh-ccHH
Confidence 466766653 445788888888874444555665 355999 999987654322111111110 2345
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
++.+.+-.-...| .+++.+...+.+|+..+..++ |||.|++=
T Consensus 120 ~~~~~~tk~~~~v--~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP 162 (563)
T 2uz1_A 120 AMAAPITKWAHRV--MATEHIPRLVMQAIRAALSAPRGPVLLDLP 162 (563)
T ss_dssp HHHGGGCSEEEEC--CCGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHhhhhhceEEEc--CCHHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 5566555555555 588889999999999998887 99999873
No 59
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=67.92 E-value=8.5 Score=45.18 Aligned_cols=105 Identities=11% Similarity=0.019 Sum_probs=67.0
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. ++..++++..|=|+.-.-.-++|+. ++++| +|+|+-+-.....-. ......+..
T Consensus 63 ~A~Gyar~t--------g~p~v~~~TsGpG~~N~~~~l~~A~-~~~vP------ll~itg~~~~~~~~~--~~~Q~~d~~ 125 (566)
T 1ozh_A 63 MAAAVGRIT--------GKAGVALVTSGPGCSNLITGMATAN-SEGDP------VVALGGAVKRADKAK--QVHQSMDTV 125 (566)
T ss_dssp HHHHHHHHH--------SSCEEEEECSTHHHHTTHHHHHHHH-HHTCC------EEEEEEECCTTTC--------CCCHH
T ss_pred HHHHHHHHH--------CCCEEEEEccChHHHHHHHHHHHHH-hcCCC------EEEEeCCCccccCCC--CcccccCHH
Confidence 466666653 4457788888888844344555553 45999 999987654322111 111112345
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
.+.+.+-...+.| .+++.+...+++|+..+..++ |||.|++=
T Consensus 126 ~~~~~~tk~~~~v--~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP 168 (566)
T 1ozh_A 126 AMFSPVTKYAIEV--TAPDALAEVVSNAFRAAEQGRPGSAFVSLP 168 (566)
T ss_dssp HHHGGGCSEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHhheEEEc--CCHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 5555555555555 588889999999999888886 99999873
No 60
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=64.83 E-value=12 Score=45.28 Aligned_cols=105 Identities=16% Similarity=0.116 Sum_probs=66.8
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. ++..++++..|=|+.-.-.-++|+. +.++| +|+|+-+-....--. ......+..
T Consensus 135 aAdGyAr~t--------Gkpgvv~~TsGpG~~N~~~gia~A~-~d~vP------llvItG~~~~~~~g~--~a~Q~~Dq~ 197 (677)
T 1t9b_A 135 MAEGYARAS--------GKPGVVLVTSGPGATNVVTPMADAF-ADGIP------MVVFTGQVPTSAIGT--DAFQEADVV 197 (677)
T ss_dssp HHHHHHHHH--------SSCEEEEECSTHHHHTTHHHHHHHH-HHTCC------EEEEEEECCTTTTTS--CCTTCCCHH
T ss_pred HHHHHHHHH--------CCCEEEEECCChHHHHHHHHHHHHH-HcCCC------EEEEeCCCChhhcCC--CCccccCHH
Confidence 466766653 4557888888888743334444443 44999 999987643221110 111112334
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTF-HKDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~-~gPvlIel~ 547 (968)
.+.+.+---.+.| .|++.+..++++|+..++.+ .|||+|++=
T Consensus 198 ~i~~~~tk~~~~v--~~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 198 GISRSCTKWNVMV--KSVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp HHTGGGSSEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHhhhheeEEEEc--CCHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 4555554445555 48899999999999999888 489999985
No 61
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=63.81 E-value=12 Score=43.55 Aligned_cols=104 Identities=12% Similarity=0.039 Sum_probs=63.5
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. ++..++++..|=|+...-.-++|+. ++++| +|+|+-+-....-- .......+..
T Consensus 56 ~A~GyAr~t--------g~~~v~~~TsGpG~~N~~~gi~~A~-~~~vP------vl~itg~~~~~~~~--~~~~Q~~d~~ 118 (549)
T 3eya_A 56 AAGAEAQLS--------GELAVCAGSCGPGNLHLINGLFDCH-RNHVP------VLAIAAHIPSSEIG--SGYFQETHPQ 118 (549)
T ss_dssp HHHHHHHHH--------SSCEEEEECTTHHHHTTHHHHHHHH-HTTCC------EEEEEEESCGGGTT--SCCTTCCCHH
T ss_pred HHHHHHHHh--------CCCEEEEeCCCCcHhhhHHHHHHHH-hhCCC------EEEEeCCCchhhcC--CCCCCccCHH
Confidence 456666653 4457888888888743344455554 45999 99998653221100 0001112234
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel 546 (968)
++.+.+---...| .+|+.+...+.+|+..+...+|||.|++
T Consensus 119 ~~~~~~tk~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~i 159 (549)
T 3eya_A 119 ELFRECSHYCELV--SSPEQIPQVLAIAMRKAVLNRGVSVVVL 159 (549)
T ss_dssp HHTSTTCSEEEEC--CSGGGHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHhhhhheEEEe--CCHHHHHHHHHHHHHHHhhCCCCEEEEe
Confidence 4444443344444 4788888888888888888889999996
No 62
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=63.52 E-value=16 Score=42.72 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=65.8
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccc-cCC--Ccc---c
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFT-TDP--RFS---R 497 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~T-T~~--~~~---r 497 (968)
.|.|.||+. + ..++++..|=|+.-.-.-++|+ .++++| +|+|+-+-..... +.. ... .
T Consensus 56 ~A~Gyar~t--------g-~~v~~~TsGpG~~N~~~gia~A-~~~~vP------ll~itg~~~~~~~~~~~~~~~~~g~~ 119 (568)
T 2wvg_A 56 SAEGYARAK--------G-AAAAVVTYSVGALSAFDAIGGA-YAENLP------VILISGAPNNNDHAAGHVLHHALGKT 119 (568)
T ss_dssp HHHHHHHHH--------S-CEEEEECTTTTHHHHHHHHHHH-HHTTCC------EEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred HHHHHHHhh--------C-CeEEEEeCCCCHHHHHHHHHHH-hhhCCC------EEEEeCCCChhHhccCcceeeecccc
Confidence 466666653 4 4778888888863333444554 355999 9999876543221 100 000 0
Q ss_pred ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q psy8742 498 SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIV 547 (968)
Q Consensus 498 ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~ 547 (968)
...+...+.+.+-.-.+.|. +++.+...+.+|+..+..++|||.|++=
T Consensus 120 ~~~d~~~~~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP 167 (568)
T 2wvg_A 120 DYHYQLEMAKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIA 167 (568)
T ss_dssp CCCHHHHHHTTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred chHHHHHHHHhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 11134556666666677774 7777888888888888888899999974
No 63
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=60.44 E-value=24 Score=41.69 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=66.9
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+.. +.-.|+++..|=|+.-.-.-++|+. ++++| +|+|+-+-.....-....| ..+..
T Consensus 80 ~A~GyAr~tg-------g~~~v~~~TsGpG~~N~~~~l~~A~-~~~vP------lvvItg~~p~~~~~~~~~Q--~~d~~ 143 (616)
T 2pan_A 80 MAEGYTRATA-------GNIGVCLGTSGPAGTDMITALYSAS-ADSIP------ILCITGQAPRARLHKEDFQ--AVDIE 143 (616)
T ss_dssp HHHHHHHHST-------TCCEEEEECSTHHHHTSHHHHHHHH-HTTCC------EEEEEEECCGGGTTTTCTT--CCCHH
T ss_pred HHHHHHHhcC-------CCceEEEeCCCchHHHHHHHHHHHH-hcCCC------EEEEecCCcccccCccccc--ccCHH
Confidence 4667776531 2336677778887643344455554 45999 9999877543322111111 12345
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
.+.+.+---.+.| .+++.+..++++|+..++.++ |||.|++=
T Consensus 144 ~~~~~~tk~~~~v--~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP 186 (616)
T 2pan_A 144 AIAKPVSKMAVTV--REAALVPRVLQQAFHLMRSGRPGPVLVDLP 186 (616)
T ss_dssp HHHGGGSSEEEEC--CSGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHHHHHHHhhccc--CCHHHHHHHHHHHHHHHhcCCCceEEEEcc
Confidence 5566555555555 578889999999998888875 89999883
No 64
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=59.80 E-value=16 Score=42.84 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=63.0
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccc-cCC--Ccc---c
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFT-TDP--RFS---R 497 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~T-T~~--~~~---r 497 (968)
.|.|.||+. + ..++++..|=|+.-.-.-++|+ .++++| +|+|+-+-..... +.. ... .
T Consensus 56 ~A~Gyar~t--------g-~~v~~~TsGpG~~N~~~gia~A-~~~~vP------ll~itg~~~~~~~~~~~~~~~~~g~~ 119 (566)
T 2vbi_A 56 SAEGYARSN--------G-AAAAVVTFSVGAISAMNALGGA-YAENLP------VILISGAPNSNDQGTGHILHHTIGKT 119 (566)
T ss_dssp HHHHHHHHH--------S-CEEEEECTTTTHHHHHHHHHHH-HHTTCC------EEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred HHHHHHhhc--------C-CeEEEEeCCCCHHHHHHHHHHH-HhhCCC------EEEEECCCChHHhccCceeeeeccCc
Confidence 466666552 4 4677777787773333444554 345999 9999876543221 100 000 0
Q ss_pred ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q psy8742 498 SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIV 547 (968)
Q Consensus 498 ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~ 547 (968)
...+...+.+.+-...+.|. +++.+...+++|+..+..++|||.|++=
T Consensus 120 ~~~d~~~~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP 167 (566)
T 2vbi_A 120 DYSYQLEMARQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIA 167 (566)
T ss_dssp CCTHHHHHHHTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred chHHHHHHHhhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 11134556666666667774 5556667777777777777899999974
No 65
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=58.01 E-value=9.9 Score=44.47 Aligned_cols=106 Identities=11% Similarity=0.073 Sum_probs=64.4
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. ++..++++..|=|+.-.-.-++|+. ++++| +|+|+-.-....-..........+..
T Consensus 60 ~A~Gyar~t--------g~pgv~~~TsGpG~~N~~~gi~~A~-~~~vP------ll~itg~~~~~~~~~~~~~~Q~~dq~ 124 (564)
T 2q28_A 60 AAAASGFLT--------QKPGICLTVSAPGFLNGLTALANAT-VNGFP------MIMISGSSDRAIVDLQQGDYEELDQM 124 (564)
T ss_dssp HHHHHHHHH--------SSCEEEEECSHHHHHHHHHHHHHHH-HHTCC------EEEEEEECCHHHHHTTSCCTTCCCHH
T ss_pred HHHHHHHHh--------CCCEEEEEccCchHHHHHHHHHHHH-hcCCC------EEEEeCCCCccccCCCCCccccccHH
Confidence 466766653 4457788877777733333445552 45999 99998764332110000011112344
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDI 546 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel 546 (968)
.+.+.+-.-.+.| .+++.+...+.+|+..+..++ |||.|++
T Consensus 125 ~~~~~~tk~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 166 (564)
T 2q28_A 125 NAAKPYAKAAFRV--NQPQDLGIALARAIRVSVSGRPGGVYLDL 166 (564)
T ss_dssp HHHGGGSSEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHHHHhhheeeec--CCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 5555555555555 478888888999998888854 8999987
No 66
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=57.11 E-value=13 Score=44.11 Aligned_cols=107 Identities=14% Similarity=0.061 Sum_probs=63.6
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. ++..++++..|=|+.-.-.-++|+. +.++| +|+|+-+-.....-. ......+..
T Consensus 84 aA~GyAr~t--------gkpgv~~~TsGpG~~N~~~gia~A~-~~~vP------lv~ItG~~~~~~~g~--~~~Q~~d~~ 146 (604)
T 2x7j_A 84 FALGLAKAK--------QRPVLLICTSGTAAANFYPAVVEAH-YSRVP------IIVLTADRPHELREV--GAPQAINQH 146 (604)
T ss_dssp HHHHHHHHH--------TSCEEEEECSSHHHHTTHHHHHHHH-HHTCC------EEEEEEECCGGGSSS--CCTTCCCCT
T ss_pred HHHHHHHhh--------CCCEEEEECChhHHHHHHHHHHHHh-hcCCC------EEEEeCCCCHHHhCC--CCCCcCcHH
Confidence 466766653 4557888888988844445556655 56999 999987643321110 000111233
Q ss_pred HhhhhcCCcEEEEe-CCCH-H---HHHHHHHHHHHHhhcC-CCcEEEEEE
Q psy8742 504 DVARVVNAPIFHVN-SDDP-E---AVIHVCNLAAEWRNTF-HKDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVD-GnD~-e---AV~~a~~~Ave~rr~~-~gPvlIel~ 547 (968)
.+.+.+---.+.|. .++. . .+...+++|+..+..+ .|||+|++=
T Consensus 147 ~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 196 (604)
T 2x7j_A 147 FLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVP 196 (604)
T ss_dssp TTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcc
Confidence 34444444556663 2331 1 2777888888888775 489999884
No 67
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=56.39 E-value=15 Score=43.46 Aligned_cols=108 Identities=11% Similarity=0.020 Sum_probs=68.0
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+ .++-.++++..|=|+.-.-.-++|+ .+.++| +|+|+-+-.....-....| ..+..
T Consensus 58 ~A~GyAr~--------tgk~~v~~~tsGpG~~N~~~gl~~A-~~~~vP------ll~Itg~~p~~~~g~~~~Q--~~d~~ 120 (590)
T 1v5e_A 58 AAVMQSKF--------GGNLGVTVGSGGPGASHLINGLYDA-AMDNIP------VVAILGSRPQRELNMDAFQ--ELNQN 120 (590)
T ss_dssp HHHHHHHT--------TCCCCEEEECTTHHHHTTHHHHHHH-HHHTCC------EEEEEEECCGGGTTTTCTT--CCCCH
T ss_pred HHHHHHHH--------HCCCEEEEeCcChHHHHHHHHHHHH-HhcCCC------EEEEcCCCCcccCCCCccc--ccCHH
Confidence 45566654 2455678888888874444455554 345999 9999877543221110011 12334
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEEeecCC
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDIVSYRRN 552 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel~tYR~~ 552 (968)
.+.+.+---.+.| .+++.+...+++|+..+..++ |||+| +..+..
T Consensus 121 ~~~~~~tk~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l--iP~dv~ 166 (590)
T 1v5e_A 121 PMYDHIAVYNRRV--AYAEQLPKLVDEAARMAIAKRGVAVLE--VPGDFA 166 (590)
T ss_dssp HHHHTTCSEEEEC--CSGGGHHHHHHHHHHHHHHTTSEEEEE--EETTGG
T ss_pred HHHHhhccEEEEe--CCHHHHHHHHHHHHHHHhcCCCceEEE--Eccchh
Confidence 4455444444444 588899999999999999998 99999 566653
No 68
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=53.73 E-value=22 Score=41.71 Aligned_cols=107 Identities=11% Similarity=0.046 Sum_probs=61.8
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccc-cCCC--cccccc
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFT-TDPR--FSRSSS 500 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~T-T~~~--~~rss~ 500 (968)
.|.|.||+. ++..++++..|=|+.-.-.-++|+. ++++| +|+|+-+-..... +... .+-...
T Consensus 74 ~A~GyAr~t--------gkp~v~~~TsGpG~~N~~~gv~~A~-~~~vP------ll~itg~~~~~~~~~~~~~~~~~q~~ 138 (565)
T 2nxw_A 74 AADAAARYS--------STLGVAAVTYGAGAFNMVNAVAGAY-AEKSP------VVVISGAPGTTEGNAGLLLHHQGRTL 138 (565)
T ss_dssp HHHHHHHHH--------TSCEEEEECTTHHHHTTHHHHHHHH-HTTCC------EEEEEEECCTTCC--CCCC-------
T ss_pred HHHHHHHHh--------CCCeEEEECCCCCHHHHHHHHHHHH-hhCCC------EEEEeCCCChhhhccCcceeeeccch
Confidence 466776653 4457788877888743344455555 46999 9999876322111 0000 000001
Q ss_pred c-HhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q psy8742 501 Y-CTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIV 547 (968)
Q Consensus 501 ~-~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~ 547 (968)
+ ..++.+.+-.....|. +|+.+...+.+|+..+....|||.|++=
T Consensus 139 d~q~~~~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 184 (565)
T 2nxw_A 139 DTQFQVFKEITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIP 184 (565)
T ss_dssp CHHHHHHTTSCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred hhHHHHHHhhheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 1 3345555555566663 5666666666776666666799999986
No 69
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=53.38 E-value=13 Score=43.63 Aligned_cols=106 Identities=12% Similarity=0.036 Sum_probs=63.0
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. ++..++++..|=|+.-.-.-++|+ .++++| +|+|+-.-....--.........+..
T Consensus 62 ~A~GyAr~t--------g~pgv~~~TsGpG~~N~~~~i~~A-~~~~vP------ll~itg~~~~~~~~~~~~~~Q~~dq~ 126 (568)
T 2c31_A 62 AASIAGYIE--------GKPGVCLTVSAPGFLNGVTSLAHA-TTNCFP------MILLSGSSEREIVDLQQGDYEEMDQM 126 (568)
T ss_dssp HHHHHHHHH--------SSCEEEEECSHHHHHHHHHHHHHH-HHHTCC------EEEEEEECCHHHHHTTCCCTTCCCHH
T ss_pred HHHHHHHHh--------CCCEEEEEcCCccHHHHHHHHHHH-HhcCCC------EEEEccCCCccccCCCCCcccccCHH
Confidence 366666653 445678887777773223334444 245999 99998764322110000001112334
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTF-HKDVVIDI 546 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~-~gPvlIel 546 (968)
.+.+.+---...| .+++.+...+.+|+..+..+ .|||.|++
T Consensus 127 ~~~~~~tk~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 168 (568)
T 2c31_A 127 NVARPHCKASFRI--NSIKDIPIGIARAVRTAVSGRPGGVYVDL 168 (568)
T ss_dssp HHSGGGSSEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHHHhhhheeeec--CCHHHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 4455444445555 57888888999999888885 48999987
No 70
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=52.44 E-value=18 Score=42.72 Aligned_cols=103 Identities=11% Similarity=0.044 Sum_probs=57.7
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCccc-ccCCCcccccccH
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGF-TTDPRFSRSSSYC 502 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~-TT~~~~~rss~~~ 502 (968)
.|.|.||+. ++-.++++..|=|+.-.-.-++|+. +.++| +|+|+-.--... .+. .....+.
T Consensus 65 aA~GyAr~t--------g~~gv~~~TsGpG~~N~~~gia~A~-~~~vP------vl~itG~~~~~~~~~~---~~Q~~d~ 126 (603)
T 4feg_A 65 AAAADAKLT--------GKIGVCFGSAGPGGTHLMNGLYDAR-EDHVP------VLALIGQFGTTGMNMD---TFQEMNE 126 (603)
T ss_dssp HHHHHHHHH--------SSCEEEEECTTHHHHTTHHHHHHHH-HTTCC------EEEEEEECCTTTTTSC---CTTCCCC
T ss_pred HHHHHHHHh--------CCceEEEecCCchHHHHHHHHHHHH-HcCCC------EEEEecCCcccccCCC---ccccccH
Confidence 355666653 4457888888888743334455554 45999 999985422110 000 0011122
Q ss_pred hHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy8742 503 TDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDI 546 (968)
Q Consensus 503 td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel 546 (968)
..+.+.+-.-...| .+++.+...+.+|+..+...+|||+|++
T Consensus 127 ~~~~~~~tk~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~i 168 (603)
T 4feg_A 127 NPIYADVADYNVTA--VNAATLPHVIDEAIRRAYAHQGVAVVQI 168 (603)
T ss_dssp GGGGTTTCSEEEEC--CCSTTHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHhhhhceEEEEc--CCHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 33344333334444 3555566666666666666679999987
No 71
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=47.45 E-value=31 Score=38.74 Aligned_cols=42 Identities=10% Similarity=0.134 Sum_probs=34.3
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCCCCC
Q psy8742 513 IFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNE 556 (968)
Q Consensus 513 ~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~GHne 556 (968)
...+.-.++.+++..+..|++.+.+.+.||++...++ . +|+.
T Consensus 152 ~~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~~~~-l-~h~~ 193 (395)
T 1yd7_A 152 LIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTDAE-V-GHMR 193 (395)
T ss_dssp CEEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEECHH-H-HHCE
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEcchh-H-hCee
Confidence 4445566899999999999999999999999998876 2 6663
No 72
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=46.96 E-value=38 Score=39.74 Aligned_cols=107 Identities=14% Similarity=0.058 Sum_probs=60.1
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. ++..|+++..|=|+.-.-.-++||. +..+| +|+|+-+-....-- .......+..
T Consensus 64 aAdGyAr~t--------G~pgv~~~TsGpG~~N~~~gia~A~-~d~vP------ll~itG~~p~~~~g--~~~~Qe~d~~ 126 (578)
T 3lq1_A 64 FALGLAKAS--------KRPVVLLCTSGTAAANYFPAVAEAN-LSQIP------LIVLTADRPHELRN--VGAPQAMDQL 126 (578)
T ss_dssp HHHHHHHHH--------CCCEEEEECSSHHHHTTHHHHHHHH-HTTCC------EEEEEEECCGGGTT--SSCTTCCCCT
T ss_pred HHHHHHHhh--------CCCEEEEECCchhhhhhhHHHHHHH-hcCCC------eEEEeCCCCHHhhc--CCCCCCcCHh
Confidence 466777663 4557888888888843333444543 56999 99998643211100 0000011223
Q ss_pred HhhhhcCCcEEEE-eCCCHHH----HHHHHHHHHHHhhcC-CCcEEEEEE
Q psy8742 504 DVARVVNAPIFHV-NSDDPEA----VIHVCNLAAEWRNTF-HKDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hV-DGnD~eA----V~~a~~~Ave~rr~~-~gPvlIel~ 547 (968)
++.+.+---.+.| +.++... +..++++|+..++.+ .|||+|++=
T Consensus 127 ~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP 176 (578)
T 3lq1_A 127 HLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFP 176 (578)
T ss_dssp TTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred hHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECc
Confidence 3333333344555 3455332 345778888887777 489999985
No 73
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=41.73 E-value=29 Score=40.09 Aligned_cols=106 Identities=12% Similarity=0.066 Sum_probs=60.7
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. ++..++++..|=|+.-.-.-++|+ .+.++| +|+|+-+-....--.-..|.. .+..
T Consensus 53 ~A~Gyar~t--------g~~~v~~~tsGpG~~N~~~~l~~A-~~~~~P------ll~itg~~~~~~~~~~~~q~~-~d~~ 116 (528)
T 1q6z_A 53 IADGYAQAS--------RKPAFINLHSAAGTGNAMGALSNA-WNSHSP------LIVTAGQQTRAMIGVEALLTN-VDAA 116 (528)
T ss_dssp HHHHHHHHH--------TSCEEEEEEHHHHHHHTHHHHHHH-HHTTCC------EEEEEEECCHHHHTTTCTTCC-TTGG
T ss_pred HHHHHHHHh--------CCCEEEEEcCChHHHHHHHHHHHH-hhcCCC------EEEEeCCCcccccCCCccccc-ccHH
Confidence 466666653 445777788888874333444554 345999 999976533211100000100 1122
Q ss_pred HhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q psy8742 504 DVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFH-KDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~-gPvlIel~ 547 (968)
.+.+.+---...| .+++.+...+.+|+..+..++ |||.|++=
T Consensus 117 ~~~~~~~k~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (528)
T 1q6z_A 117 NLPRPLVKWSYEP--ASAAEVPHAMSRAIHMASMAPQGPVYLSVP 159 (528)
T ss_dssp GSSTTSCSCEECC--SSGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHHHHhhHhhhcC--CCHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 2233222223333 577778888889988888776 69999874
No 74
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=41.19 E-value=37 Score=33.70 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=27.7
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy8742 578 LDKYANKLIEEKVVTEEQVKDVKEKYDKICEE 609 (968)
Q Consensus 578 i~~y~~~Li~~Gv~t~ee~~~i~~e~~~~l~~ 609 (968)
+.-+++-|++.|++|++|+++..++++++...
T Consensus 113 L~ALe~lLvekGvit~~EL~ar~aEv~ar~~~ 144 (157)
T 2zzd_B 113 LLTAARILVDKQFVTLTELHNKIVEMRERVAS 144 (157)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhc
Confidence 45688899999999999999999888888764
No 75
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=32.49 E-value=48 Score=31.29 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=33.6
Q ss_pred cCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCC
Q psy8742 509 VNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNG 553 (968)
Q Consensus 509 ~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~G 553 (968)
-|+-.+...|||.||.-.|.++.+..+|+|.|-| ||-+.|
T Consensus 82 sgvm~i~f~gddlea~ekalkemirqarkfagtv-----tytl~g 121 (170)
T 4hhu_A 82 SGVMVIVFEGDDLEALEKALKEMIRQARKFAGTV-----TYTLSG 121 (170)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE-----EEEECS
T ss_pred ceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceE-----EEEEeC
Confidence 3667788899999999999999999999999854 565554
No 76
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=32.11 E-value=51 Score=38.39 Aligned_cols=106 Identities=9% Similarity=0.091 Sum_probs=58.5
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccc---cCCC--ccc-
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFT---TDPR--FSR- 497 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~T---T~~~--~~r- 497 (968)
.|.|.||+. + ..++++..|=|+.-.-.-++|+. +.++| +|+|+-+-..... .... ...
T Consensus 57 ~A~Gyar~t--------g-~~v~~~TsGpG~~N~~~gia~A~-~~~~P------ll~itg~~~~~~~~~~~~~~~~~g~~ 120 (563)
T 2vk8_A 57 AADGYARIK--------G-MSCIITTFGVGELSALNGIAGSY-AEHVG------VLHVVGVPSISAQAKQLLLHHTLGNG 120 (563)
T ss_dssp HHHHHHHHH--------S-CEEEEEETTHHHHHHHHHHHHHH-HHTCC------EEEEEEECCHHHHHTTCCCTTSCSSS
T ss_pred HHHHHHHhh--------C-CcEEEEcCCCcHHHHHHHHHHHH-hhCCC------EEEEECCCChHHhhcccccccccCCc
Confidence 466766653 3 36777777888732223344433 34999 9999876332110 0000 000
Q ss_pred ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q psy8742 498 SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIV 547 (968)
Q Consensus 498 ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~ 547 (968)
.-.....+.+.+--....|. +++.+...+.+|+..+...+|||.|++=
T Consensus 121 ~~q~~~~~~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 168 (563)
T 2vk8_A 121 DFTVFHRMSANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLP 168 (563)
T ss_dssp CSSHHHHHHHTTCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred chHHHHHHhhhhEEEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 00123455555555566664 5555666666666666556799999874
No 77
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=30.93 E-value=55 Score=30.90 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=29.9
Q ss_pred CCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEE
Q psy8742 510 NAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVV 543 (968)
Q Consensus 510 giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvl 543 (968)
|+-.+...|||.||.-.|.++.+..+|+|.|-|-
T Consensus 2 gvm~i~f~gddlea~ekalkemirqarkfagtvt 35 (170)
T 4hhu_A 2 GVMVIVFEGDDLEALEKALKEMIRQARKFAGTVT 35 (170)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ceEEEEEecCcHHHHHHHHHHHHHHHHhhcceEE
Confidence 4567788999999999999999999999998653
No 78
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=29.88 E-value=56 Score=27.70 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=29.7
Q ss_pred EEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecCCC
Q psy8742 514 FHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNG 553 (968)
Q Consensus 514 ~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tYR~~G 553 (968)
++.-|+|.+|.-.|.++.+..+|+|.|- +||-+-|
T Consensus 5 irfrgddleafekalkemirqarkfagt-----vtytldg 39 (85)
T 2kl8_A 5 IRFRGDDLEAFEKALKEMIRQARKFAGT-----VTYTLDG 39 (85)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTTTCE-----EEEEECS
T ss_pred eeecCCcHHHHHHHHHHHHHHHHhhcce-----EEEEecC
Confidence 5678999999999999999999999985 4666555
No 79
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=29.80 E-value=70 Score=37.30 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=59.1
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCccccc-CC--C--ccc-
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTT-DP--R--FSR- 497 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT-~~--~--~~r- 497 (968)
.|.|.||+. + ..++++..|=|+...-.-+.|+ .+.++| +|+|+-........ .. . .+.
T Consensus 78 ~A~GyAr~t--------G-~~v~~~tsGpG~~N~~~gi~~A-~~~~vP------lv~itg~~~~~~~~~~~~~~~~~~~~ 141 (570)
T 2vbf_A 78 MADGYARTK--------K-AAAFLTTFGVGELSAINGLAGS-YAENLP------VVEIVGSPTSKVQNDGKFVHHTLADG 141 (570)
T ss_dssp HHHHHHHHH--------S-CEEEEEETTHHHHHHHHHHHHH-HHTTCC------EEEEEEECCHHHHHHTCCCTTSCSSS
T ss_pred HHHHHHHHh--------C-CeEEEEcCCCCHHHHHHHHHHH-hhhCCC------EEEEeCCCCHHHhhccccceeecccc
Confidence 466766652 3 4677887787763223334444 345999 99999775542211 00 0 000
Q ss_pred ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q psy8742 498 SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIV 547 (968)
Q Consensus 498 ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~ 547 (968)
......++.+.+-...+.|.- +.+...++.|+..+..++|||.|++=
T Consensus 142 ~~~~~~~~~~~~tk~~~~v~~---~~~~~~l~~A~~~A~~~~GPV~l~iP 188 (570)
T 2vbf_A 142 DFKHFMKMHEPVTAARTLLTA---ENATYEIDRVLSQLLKERKPVYINLP 188 (570)
T ss_dssp CCCHHHHHTGGGCSEEEECCT---TTHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred chHHHHHHhhhhEEEEEEECc---ccHHHHHHHHHHHHhhCCCCEEEEcc
Confidence 011134556666666677753 44555555555555556789999983
No 80
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=25.65 E-value=1e+02 Score=35.68 Aligned_cols=105 Identities=8% Similarity=0.051 Sum_probs=55.9
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCccccc-C--CC--ccc-
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTT-D--PR--FSR- 497 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT-~--~~--~~r- 497 (968)
.|.|.||+. + ..++++..|=|+...-.-++|+. +.++| +|+|+-+-...... . .. ...
T Consensus 58 ~A~Gyar~t--------g-~~v~~~tsGpG~~N~~~gv~~A~-~~~~P------ll~itg~~p~~~~~~~~~~~~~~g~~ 121 (552)
T 1ovm_A 58 AADGYARCK--------G-FAALLTTFGVGELSAMNGIAGSY-AEHVP------VLHIVGAPGTAAQQRGELLHHTLGDG 121 (552)
T ss_dssp HHHHHHHHH--------S-CEEEEEETTHHHHHTHHHHHHHH-HTTCC------EEEEEEECCHHHHHHTCCCTTSCSSS
T ss_pred HHHHHHHhh--------C-CcEEEEccCCcHHHHHHHHHHHh-hhcCC------EEEEECCCCHHHHhcccccccccCCC
Confidence 466777663 2 35777777777632233333333 45999 99998754322110 0 00 000
Q ss_pred ccccHhHhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q psy8742 498 SSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIV 547 (968)
Q Consensus 498 ss~~~td~Ak~~giP~~hVDGnD~eAV~~a~~~Ave~rr~~~gPvlIel~ 547 (968)
......++.+.+-...+.|.- +.+...++.|+..+...+|||.|++=
T Consensus 122 ~~q~~~~~~~~~tk~~~~v~~---~~~~~~i~~A~~~a~~~~GPV~l~iP 168 (552)
T 1ovm_A 122 EFRHFYHMSEPITVAQAVLTE---QNACYEIDRVLTTMLRERRPGYLMLP 168 (552)
T ss_dssp CCSHHHHHTGGGCSEEEECCT---TTHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred cHHHHHHHHHhheeEEEEEcc---ccHHHHHHHHHHHHHhCCCCEEEEee
Confidence 001234566666666677753 33444444444444445689999984
No 81
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=22.12 E-value=2.1e+02 Score=29.48 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=44.9
Q ss_pred CceEEEEEEeCCccccCcchHHHHHHhC----CCCCCCcccEEEEEEcCCcccccCCCcccccccHhHhhhhcCCcEEEE
Q psy8742 441 GKKVMSILLHGDAAFCGQGVVFETFHLS----DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHV 516 (968)
Q Consensus 441 ~~~~v~v~~hGDgAfsgQGvv~EaLNlA----~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~td~Ak~~giP~~hV 516 (968)
....++|++.|.|+ +.+++--+ .++ .-++.||.|+. +. +.-++|+.+|+|++++
T Consensus 7 ~~~ri~vl~SG~gs------nl~all~~~~~~~~~----~~I~~Vis~~~--------~a----~~l~~A~~~gIp~~~~ 64 (215)
T 3kcq_A 7 KELRVGVLISGRGS------NLEALAKAFSTEESS----VVISCVISNNA--------EA----RGLLIAQSYGIPTFVV 64 (215)
T ss_dssp CCEEEEEEESSCCH------HHHHHHHHTCCC-CS----EEEEEEEESCT--------TC----THHHHHHHTTCCEEEC
T ss_pred CCCEEEEEEECCcH------HHHHHHHHHHcCCCC----cEEEEEEeCCc--------ch----HHHHHHHHcCCCEEEe
Confidence 34578888877777 33433322 232 22677776642 11 2357899999999998
Q ss_pred eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q psy8742 517 NSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSY 549 (968)
Q Consensus 517 DGnD~eAV~~a~~~Ave~rr~~~gPvlIel~tY 549 (968)
+-.+... ...++..++.+-|++| +..|
T Consensus 65 ~~~~~~~-----~~~~~~L~~~~~Dliv-lagy 91 (215)
T 3kcq_A 65 KRKPLDI-----EHISTVLREHDVDLVC-LAGF 91 (215)
T ss_dssp CBTTBCH-----HHHHHHHHHTTCSEEE-ESSC
T ss_pred CcccCCh-----HHHHHHHHHhCCCEEE-EeCC
Confidence 7543211 2233344455555544 4455
No 82
>1bwx_A Parathyroid hormone; peptide hormone, solution structure; NMR {Homo sapiens} SCOP: j.15.1.1 PDB: 1zwf_A 1zwg_A* 2l1x_A
Probab=21.84 E-value=43 Score=25.70 Aligned_cols=18 Identities=39% Similarity=0.892 Sum_probs=15.8
Q ss_pred cccCCHHHHHHHHHHhcC
Q psy8742 265 MFINSLEQCNWIRQKLET 282 (968)
Q Consensus 265 ~hi~~~e~r~Wl~~~~E~ 282 (968)
.|+.+.+.+.||++++|.
T Consensus 13 ~~~q~~~R~~WLq~~L~~ 30 (39)
T 1bwx_A 13 KHLNSMERVEWLRKKLQD 30 (39)
T ss_dssp SSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 478899999999999985
No 83
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=21.17 E-value=1.9e+02 Score=33.59 Aligned_cols=105 Identities=10% Similarity=0.015 Sum_probs=56.5
Q ss_pred hhhhHhhHhHhhcCCCCCceEEEEEEeCCccccCcchHHHHHHhCCCCCCCcccEEEEEEcCCcccccCCCcccccccHh
Q psy8742 424 VVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCT 503 (968)
Q Consensus 424 vA~G~A~A~q~~~~~~~~~~~v~v~~hGDgAfsgQGvv~EaLNlA~LP~y~~gGvIfVVeNNqig~TT~~~~~rss~~~t 503 (968)
.|.|.||+. ++..++++..|=|+.-.-.-++|+. +.++| +|+|.-+-....--.-..| ..+..
T Consensus 61 ~AdGyAr~t--------G~pgv~~~TsGpG~~N~~~gia~A~-~d~vP------ll~itG~~~~~~~g~~~~Q--~~d~~ 123 (556)
T 3hww_A 61 LALGLAKVS--------KQPVAVIVTSGTAVANLYPALIEAG-LTGEK------LILLTADRPPELIDCGANQ--AIRQP 123 (556)
T ss_dssp HHHHHHHHH--------CSCEEEEECSSHHHHTTHHHHHHHH-HHCCC------EEEEEEECCGGGSSSSCTT--CCCCT
T ss_pred HHHHHHHhh--------CCCEEEEECCCcHHHhhhHHHHHHH-HhCCC------eEEEeCCCCHHHhccCCCc--cccHH
Confidence 355666653 4557888888888843333444443 45899 9999865432111000001 11122
Q ss_pred HhhhhcCCcEEEEe-CC---CHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q psy8742 504 DVARVVNAPIFHVN-SD---DPEAVIHVCNLAAEWRNTFHKDVVIDIV 547 (968)
Q Consensus 504 d~Ak~~giP~~hVD-Gn---D~eAV~~a~~~Ave~rr~~~gPvlIel~ 547 (968)
.+.+.+---.+.|. .. .++.+.+++++|+. ..-.|||+|++=
T Consensus 124 ~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~--~~r~GPV~i~iP 169 (556)
T 3hww_A 124 GMFASHPTHSISLPRPTQDIPARWLVSTIDHALG--TLHAGGVHINCP 169 (556)
T ss_dssp TTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHH--SCCSSCEEEEEE
T ss_pred HHHhhheeEEEecCCCcccccHHHHHHHHHHHHh--cCCCCCEEEeCC
Confidence 23332322334442 22 24568888888882 223489999984
Done!