RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8742
(968 letters)
>gnl|CDD|236499 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component;
Reviewed.
Length = 924
Score = 1161 bits (3005), Expect = 0.0
Identities = 420/928 (45%), Positives = 541/928 (58%), Gaps = 111/928 (11%)
Query: 47 FLNGASANYVEEMYRSWQEDPKSVHASWDAFFRSSSAGALPEDPKSV-HASWDAFFRSSS 105
FL GA+A Y+EE+Y + +DP SV W AFF LP V H++ FR +
Sbjct: 13 FLFGANAAYIEELYEQYLKDPDSVDEEWRAFFD-----GLPGVAPDVAHSAVRESFRRLA 67
Query: 106 AGALPGQAYQPPPTLAPPSGNQVPISSLAPFVGGASSHFNEPLSEKIIDDHLAVQALIRS 165
A A + D + V LI +
Sbjct: 68 KPARVSSA--------------------------------------VSDPQVKVLQLINA 89
Query: 166 YQIRGHHIAQLDPLGIQAADLDDKHPQ-ELIFHNFWPSSISYAQQLQHKVADMMQKETDM 224
Y+ RGH A LDPLG+ P+ + F+ E D+
Sbjct: 90 YRFRGHLAANLDPLGLWKRP---DVPELDPAFYGL--------------------TEADL 126
Query: 225 EKVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLETPG 284
++ F + + GKE A LREII+ L+ TYC SIG E+M I+ E+ W++Q++E+
Sbjct: 127 DRTF--NTGSLALGKETA-TLREIIEALKKTYCGSIGVEYMHISDPEERRWLQQRIESGR 183
Query: 285 IMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTELGV 344
+ S ++K+ IL RLT A GFE FL K+ +KRF LEG E LIP + ++I ++ +LGV
Sbjct: 184 P-SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGV 242
Query: 345 ESVVMGMPHRGRLNVLANVCRKPLEQIFTQFA--ALEAADDGSGDVKYHLGTYIERLNRV 402
+ +V+GM HRGRLNVL NV KP +F +F GSGDVKYHLG +R
Sbjct: 243 KEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDR--ET 300
Query: 403 TNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGD-GEGKKVMSILLHGDAAFCGQGVV 461
+ L++ NPSHLE V+PVV+G RA Q RGD + KKV+ IL+HGDAAF GQGVV
Sbjct: 301 DGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVV 360
Query: 462 FETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDP 521
ET +LS L Y T GTIHIV+NNQIGFTT P RS+ YCTDVA++V APIFHVN DDP
Sbjct: 361 AETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDP 420
Query: 522 EAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKY 581
EAV+ LA E+R F KDVVID+V YRR+GHNE DEP FTQPLMYK IKK P + Y
Sbjct: 421 EAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRELY 480
Query: 582 ANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLK 641
A+KL+ E V+TEE+ ++ +Y + + ++ + DWL WS + G +
Sbjct: 481 ADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEW---RPADWLAGDWS-PYLGHEWDD 536
Query: 642 VSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVES-RTVDWALGEAMA 700
TG+ L + ++ ++ P F +H +++IL+ R +M E + +DW + EA+A
Sbjct: 537 PVDTGVPLERLKELAEKLTTVPEG---FKVHPKVKKILEDRREMAEGEKPIDWGMAEALA 593
Query: 701 FGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSL 760
F SLL EG VRLSGQD RGTFSHRH VLH Q TY PLN+L QA + V +S L
Sbjct: 594 FASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQ-KTGETYIPLNHLSEGQASFEVYDSPL 652
Query: 761 SEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLP 820
SE VLGFE G+S PNTLV WEAQFGDF N AQ +IDQFISSG+ KW R SGLVMLLP
Sbjct: 653 SEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLP 712
Query: 821 HGLEGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLF 880
HG EG GPEHSSARLERFLQ+ ++ N + N TTPA F
Sbjct: 713 HGYEGQGPEHSSARLERFLQLCAED---------------------NMQVCNPTTPAQYF 751
Query: 881 HILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVE 940
H+LRRQ PFRKPLV+MTPKSLLRHP A SS +++ EG+ F VI D I E V+
Sbjct: 752 HLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGS-FQPVIGD--IDELDPKKVK 808
Query: 941 KLVFCSGKVYYDLIKARNDNNLGDKIAV 968
++V CSGKVYYDL++AR + D +A+
Sbjct: 809 RVVLCSGKVYYDLLEARRKRGIDD-VAI 835
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase
(E1) component, and related enzymes [Energy production
and conversion].
Length = 906
Score = 1019 bits (2638), Expect = 0.0
Identities = 406/924 (43%), Positives = 528/924 (57%), Gaps = 123/924 (13%)
Query: 46 PFLNGASANYVEEMYRSWQEDPKSVHASWDAFFRSSSAGALPEDPKSVHASWDAFFRSSS 105
+L+GA+A Y+EE+Y + +DP SV SW FF L + + ++F R +
Sbjct: 8 SYLSGANAAYIEELYEQYLQDPNSVDPSWQEFFD-----GLSDPVR------ESFRRLAK 56
Query: 106 AGALPGQAYQPPPTLAPPSGNQVPISSLAPFVGGASSHFNEPLSEKIIDDHLAVQALIRS 165
G P + V LI +
Sbjct: 57 KGNDP----------------------------------------DATLKSVKVLRLINA 76
Query: 166 YQIRGHHIAQLDPLGIQ---AADLDDKHPQELIFHNFWPSSISYAQQLQHKVADMMQKET 222
Y+ RGH A LDPLG++ +LD FH E
Sbjct: 77 YRSRGHLHANLDPLGLKRPDVPELD------PEFHGL--------------------TEA 110
Query: 223 DMEKVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLET 282
D+++ F GKE LRE+I+ L+ TYC SIG E+M I+ E+ W+++++E+
Sbjct: 111 DLDETF--NIGDGFLGKETM-TLRELIEILKKTYCGSIGVEYMHISDPEEKRWLQERIES 167
Query: 283 PGIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTEL 342
+ ++K+ IL RLT A GFE FL K+ KRF LEG E LIP + ++ID++ +
Sbjct: 168 GKPTF-TAEEKKAILKRLTAAEGFERFLHTKFPGAKRFSLEGGESLIPMLDELIDRAGKQ 226
Query: 343 GVESVVMGMPHRGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRV 402
GV+ VV+GM HRGRLNVL NV KP IF +F A D SGDVKYHLG +R +
Sbjct: 227 GVKEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDR--QT 284
Query: 403 TNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVF 462
+ L++ NPSHLE V+PVV+G RA+Q GD E KV+ IL+HGDAAF GQGVV
Sbjct: 285 DGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVA 344
Query: 463 ETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPE 522
ET +LS L Y+ GT HIV+NNQIGFTT P +RS+ YCTDVA+++ APIFHVN+DDPE
Sbjct: 345 ETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDPE 404
Query: 523 AVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYA 582
AV+ LA E+RN F KDVVID+V YRR+GHNE DEP TQPLMY+ IKK P YA
Sbjct: 405 AVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYA 464
Query: 583 NKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFF-EGKDPLK 641
+KLI E V++EE+ ++ Y ++ + KE K DWL+ WSG+ G +
Sbjct: 465 DKLIAEGVISEEEADELVNDYRDALDQGF-EVVKEY--KEMDWLEGDWSGYLNAGLRHVD 521
Query: 642 VSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVES-RTVDWALGEAMA 700
TG+ + TL +GK+ + P F +H +++IL+ R M E + +DW + E +A
Sbjct: 522 ---TGVPKKTLKELGKKLCTIPEG---FEVHPRVKKILEDRKAMAEGGQGIDWGMAETLA 575
Query: 701 FGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSL 760
F +LL EG +RLSGQD RGTFSHRH VLH Q TY PLN+L Q + V NS L
Sbjct: 576 FATLLDEGHPIRLSGQDSGRGTFSHRHAVLHDQ-KTGETYIPLNHLSKGQGKFEVINSPL 634
Query: 761 SEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLP 820
SE VLGFE G+S+ NP TLV WEAQFGDF N AQ +IDQFISSG+ KW R SGLVMLLP
Sbjct: 635 SEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLP 694
Query: 821 HGLEGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLF 880
HG EG GPEHSSARLERFLQ+ + N + +TPA F
Sbjct: 695 HGYEGQGPEHSSARLERFLQLCAEN---------------------NMQVVVPSTPAQYF 733
Query: 881 HILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVE 940
H+LRRQ FRKPL++MTPKSLLRH A SS +++ EGT F V+ D V+
Sbjct: 734 HLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEELTEGT-FQPVLEDIDEL---DPKVK 789
Query: 941 KLVFCSGKVYYDLIKARNDNNLGD 964
++V CSGKVYYDL++ R + D
Sbjct: 790 RVVLCSGKVYYDLLEQREKDGRDD 813
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 898 bits (2324), Expect = 0.0
Identities = 366/833 (43%), Positives = 479/833 (57%), Gaps = 85/833 (10%)
Query: 145 NEPLSEKIIDDHLAVQALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQ-ELIFHN--FWP 201
E +D + V LI +Y++RGH +A DPL + HP +++ H W
Sbjct: 375 IPADHEDEVDKNARVMELIHAYRVRGHLMADTDPLEYRQ----RSHPDLDVLTHGLTLW- 429
Query: 202 SSISYAQQLQHKVADMMQKETDMEKVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIG 261
D+++ F GGKE+ + LR+I+ L D+YCR++G
Sbjct: 430 ---------------------DLDREFP---VGGFGGKER-MKLRDILGVLRDSYCRTVG 464
Query: 262 AEFMFINSLEQCNWIRQKLETPGIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFG 321
E+M I EQ W+++++E P E+QKR IL++L A FE FL K+ +KRF
Sbjct: 465 IEYMHIQDPEQRRWLQERVERPHEKPTREEQKR-ILSKLNAAEAFETFLQTKYVGQKRFS 523
Query: 322 LEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQF--AALE 379
LEG E LIP + V+D++ E G++ VV+GM HRGRLNVLAN+ KP QIF +F
Sbjct: 524 LEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDP 583
Query: 380 AADDGSGDVKYHLG---TYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYR 436
+ GSGDVKYHLG T+ ++ I++++ ANPSHLEAVDPV++G RA+Q
Sbjct: 584 RSAQGSGDVKYHLGAEGTFT----QMFGDEIKVSLAANPSHLEAVDPVLEGIVRAKQDRL 639
Query: 437 GDGE-GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRF 495
GE G V+ ILLHGDAAF GQGVV ET +LS L Y T GTIHIVVNNQ+GFTT P
Sbjct: 640 DKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPES 699
Query: 496 SRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHN 555
SRSS Y TDVA+++ APIFHVN DDPEAV+ V LA E+R FHKDVVID+V YRR GHN
Sbjct: 700 SRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHN 759
Query: 556 EIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNAR 615
E D+P TQPLMY +I Y LI +T E+ + Y E + N
Sbjct: 760 EGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQALRDYQGQLERVF-NEV 818
Query: 616 KETHIKYKDWLDSPWSGFFEGKDPLKVS-TTGINENTLVHIGKRFSSPPPNATEFVIHKG 674
+E K + +S E T ++ L IG + P F +H
Sbjct: 819 REAEKKPPEPPESV-----ESDQGPPAGVDTAVSAEVLERIGDAHVNLPEG---FTVHPK 870
Query: 675 IERILKARLQMVESRTVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQT 734
++ +L+ R +M +DWA GE +AFGSLL EG VRLSGQD RGTFS RH VL
Sbjct: 871 LKPLLEKRREMAREGGIDWAFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLI--- 927
Query: 735 VDKAT---YRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFN 791
D+ T Y PL NL DQ + V +S LSE+ +GFE G+S+ P+ LV WEAQFGDF
Sbjct: 928 -DRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFA 986
Query: 792 NTAQCIIDQFISSGQAKWVRQSGLVMLLPHGLEGMGPEHSSARLERFLQMSDDEPIRVIL 851
N AQ IID+FISSG+AKW ++SG+V+LLPHG EG GP+HSSAR+ERFLQ+ +
Sbjct: 987 NGAQTIIDEFISSGEAKWGQRSGVVLLLPHGYEGQGPDHSSARIERFLQLCAEG------ 1040
Query: 852 VLVPIEFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKS 911
N +A +TPAN FH+LRRQ R+PLV+ TPKS+LR A S
Sbjct: 1041 ---------------NMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVS 1085
Query: 912 SFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGD 964
+D EG F VI D ++ + V +++ CSGK+YYDL R + D
Sbjct: 1086 DVEDFTEGK-FRPVIDDPTVDD--GAKVRRVLLCSGKLYYDLAARREKDGRDD 1135
Score = 53.4 bits (129), Expect = 6e-07
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 44 AEPFLNGASANYVEEMYRSWQEDPKSVHASWDAFFRSSSAGALPEDPKSVHASWDAFFRS 103
+ F G + VEEMY+ + DP SV SW FF G+ + A+ A
Sbjct: 1 SSEF--GQNEWLVEEMYQQYLADPNSVDPSWREFFADYGPGSTAAPTAAAAAAAAA---- 54
Query: 104 SSAGALPGQAYQPPPTLAPPSGNQVPISSLAP 135
+SA A A P P P + P
Sbjct: 55 ASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP 86
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component.
The 2-oxoglutarate dehydrogenase complex consists of
this thiamine pyrophosphate-binding subunit (E1),
dihydrolipoamide succinyltransferase (E2), and lipoamide
dehydrogenase (E3). The E1 ortholog from Corynebacterium
glutamicum is unusual in having an N-terminal extension
that resembles the dihydrolipoamide succinyltransferase
(E2) component of 2-oxoglutarate dehydrogenase [Energy
metabolism, TCA cycle].
Length = 929
Score = 876 bits (2266), Expect = 0.0
Identities = 389/929 (41%), Positives = 518/929 (55%), Gaps = 108/929 (11%)
Query: 47 FLNGASANYVEEMYRSWQEDPKSVHASWDAFFRSSSAGALPEDPKSVHASWDAFFRSSSA 106
+L+GA+ +Y+EE+Y + DP SV ASW + F P H+ ++FR +
Sbjct: 1 YLSGANQSYIEELYEDYLTDPDSVDASWRSTFDQ--LPGPGPAPDQFHSPTRSYFRRLAK 58
Query: 107 GALPGQAYQPPPTLAPPSGNQVPISSLAPFVGGASSHFNEPLSEKIIDDHLAVQALIRSY 166
A G P + + +Q LIR+Y
Sbjct: 59 DASRGSVTISDP-------------------------------DTNVSQVKVLQ-LIRAY 86
Query: 167 QIRGHHIAQLDPLGIQAADLDDKHPQELI--FHNFWPSSISYAQQLQHKVADMMQKETDM 224
+ RGH A LDPLG++ EL F+ E D+
Sbjct: 87 RFRGHLHANLDPLGLK----QQDKVPELDLSFYGL--------------------TEADL 122
Query: 225 EKVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLETPG 284
++ F + S L E+++ L+ TYC SIGAE+M I S E+ W++Q++E+
Sbjct: 123 QETFNIGSFVSGKDATMKLSNLELLQALKQTYCGSIGAEYMHITSTEEKRWLQQRIESGE 182
Query: 285 IMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTELGV 344
+ ++K+ L+RLT A GFE FL K+ KRF LEG + L+P +K++I S G
Sbjct: 183 RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFSLEGLDALVPMLKEIIRHSVNSGT 242
Query: 345 ESVVMGMPHRGRLNVLANVCRKPLEQIFTQFAALEAAD--DGSGDVKYHLGTYIERLNRV 402
VV+GM HRGRLNVL NV KP E IF++FA + DG+GDVKYH+G +
Sbjct: 243 RDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFT-T 301
Query: 403 TNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDG-EGKKVMSILLHGDAAFCGQGVV 461
K + LA+ NPSHLE V PVV G TRA D E KV++IL+HGDAAF GQGVV
Sbjct: 302 DGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVV 361
Query: 462 FETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDP 521
ET ++S L Y+ GTIHI++NNQIGFTT+P +RS+ YC+D+A+++ APIFHVN+DDP
Sbjct: 362 QETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNADDP 421
Query: 522 EAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKY 581
EAV LA E+RNTF +DV ID+V YRR+GHNE DEP TQPLMY+ IKK P Y
Sbjct: 422 EAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKIKKHPTPRKVY 481
Query: 582 ANKLIEEKVVTEEQVKDVKEKYDKICEEA--YVNARKETHIKYKDW---LDSPWSGFFEG 636
A+KL+ E V TEE V ++ Y E A V + +E + W L+ W +
Sbjct: 482 ADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPN 541
Query: 637 KDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVES--RTVDWA 694
K L + KR S P +H + +I R + + + + DW
Sbjct: 542 KVE---------MKRLQELAKRISEVP---EGVEMHSRVAKIYFDRTKAMAAGEKLFDWG 589
Query: 695 LGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYT 754
E +AF +L+ +GI VRLSG+D ERGTF RH VLH Q+ + +TY PL +L+ Q +
Sbjct: 590 GAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQS-NGSTYTPLQHLHNGQGAFR 648
Query: 755 VCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSG 814
V NS LSE VLGFE G++ T+P TLV WEAQFGDF N AQ +IDQFISSG+ KW + SG
Sbjct: 649 VWNSVLSEESVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSG 708
Query: 815 LVMLLPHGLEGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCT 874
LVMLLPHG EG GPEHSS RLERFLQ++ ++ N + T
Sbjct: 709 LVMLLPHGYEGQGPEHSSGRLERFLQLAAEQ---------------------NMQVCVPT 747
Query: 875 TPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIP--DDSIS 932
TPA +FHILRRQ R+PLV+M+PKSLLRHP A SS +++ EGT F VI ++S
Sbjct: 748 TPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGT-FQPVIGEIEESGL 806
Query: 933 ERKADSVEKLVFCSGKVYYDLIKARNDNN 961
+ V++LV CSGKVYYDL + R N
Sbjct: 807 SLDPEGVKRLVLCSGKVYYDLHEQRRKNG 835
>gnl|CDD|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1
of OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the
2-oxoglutarate dehydrogenase multienzyme complex (OGDC).
OGDC catalyzes the oxidative decarboxylation of
2-oxoglutarate to succinyl-CoA and carbon dioxide, a key
reaction of the tricarboxylic acid cycle.
Length = 265
Score = 503 bits (1298), Expect = e-173
Identities = 180/266 (67%), Positives = 211/266 (79%), Gaps = 4/266 (1%)
Query: 306 FEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCR 365
FE FLA K+ +KRFGLEGAE LIPA+ ++ID++ ELGVE VV+GM HRGRLNVLANV
Sbjct: 1 FEQFLATKFPGQKRFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLG 60
Query: 366 KPLEQIFTQF---AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVD 422
KPLEQIF++F + D+GSGDVKYHLG +R K + L++ NPSHLEAV+
Sbjct: 61 KPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSDRKTPS-GKKVHLSLAPNPSHLEAVN 119
Query: 423 PVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIV 482
PVV GKTRA+Q YRGDGE KV+ IL+HGDAAF GQGVV+ET +LS+LP YTT GTIHIV
Sbjct: 120 PVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIV 179
Query: 483 VNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDV 542
VNNQIGFTTDPR SRSS YCTDVA+++ APIFHVN DDPEAV+ LA E+R F KDV
Sbjct: 180 VNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDV 239
Query: 543 VIDIVSYRRNGHNEIDEPMFTQPLMY 568
VID+V YRR+GHNE+DEP FTQPLMY
Sbjct: 240 VIDLVCYRRHGHNELDEPSFTQPLMY 265
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component. This family uses
thiamine pyrophosphate as a cofactor. This family
includes pyruvate dehydrogenase, 2-oxoglutarate
dehydrogenase and 2-oxoisovalerate dehydrogenase.
Length = 303
Score = 236 bits (603), Expect = 2e-70
Identities = 78/317 (24%), Positives = 127/317 (40%), Gaps = 30/317 (9%)
Query: 297 LARLTRATGFEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGR 356
+ L R E + + G A++ I + G + V+ +R
Sbjct: 3 MMTLRR---MEDARDALYQRKGIRGFCHLYAGQEALQVGIAAALNPG-DYVIPT--YRDH 56
Query: 357 LNVLANVCRKPLEQIFTQFA-ALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANP 415
N+LA LEQ+ + G G + G Y + NR N +
Sbjct: 57 GNLLARG--VSLEQVMAELTGNEAGCSKGKGGSMH--GYYAPKNNRFYGGNGIVG----- 107
Query: 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTT 475
A P+ G A ++ GKK ++I L GD A QG FE + + L
Sbjct: 108 ----AQVPLGAGIALAAKY-----RGKKEVAITLFGDGA-TNQGQFFEALNFAALWKLPV 157
Query: 476 HGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWR 535
I + NNQ +T S +S+ D AR P V+ DP AV AAE
Sbjct: 158 ---IFVCENNQYAISTPAERSSASTTYADRARGYGIPGIRVDGMDPLAVYQAVKFAAERA 214
Query: 536 NTFHKDVVIDIVSYRRNGHNEIDEPMFTQ-PLMYKIIKKTPPALDKYANKLIEEKVVTEE 594
T + +I++V+YR GH+ D+P + + ++K + + L+ VV+EE
Sbjct: 215 RTGNGPTLIELVTYRYGGHSMSDDPSTYRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEE 274
Query: 595 QVKDVKEKYDKICEEAY 611
++K+++++ K EEA
Sbjct: 275 ELKEIEKEVRKEIEEAV 291
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain.
This family includes transketolase enzymes, pyruvate
dehydrogenases, and branched chain alpha-keto acid
decarboxylases.
Length = 172
Score = 171 bits (436), Expect = 3e-49
Identities = 51/220 (23%), Positives = 72/220 (32%), Gaps = 49/220 (22%)
Query: 689 RTVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYP 748
+ + A L K V G DV GTF+ +LH
Sbjct: 1 KKIATRKASGEALAELAKRDPRVVGGGADVAGGTFTVTKGLLH----------------- 43
Query: 749 DQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAK 808
Q V ++ ++E ++G G ++ L EA FGDF N D I A
Sbjct: 44 PQGDGRVIDTGIAEQAMVGIANGMALHGL--LPPVEATFGDFAN----RADDAIRHYAAL 97
Query: 809 WVRQSG-LVMLLPHGLEGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDIN 867
+V P G+ GP H S FL+ +P N
Sbjct: 98 GKLPVPFVVTRDPIGVGEDGPTHQSQEDLAFLR------------AIP-----------N 134
Query: 868 WIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHP 907
+ + A +LR I P+VL P+ LLRH
Sbjct: 135 LKVVRPSDAAETKGLLRAAIEDDG--PVVLRLPRQLLRHK 172
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain.
Transketolase (TK) catalyzes the reversible transfer of
a two-carbon ketol unit from xylulose 5-phosphate to an
aldose receptor, such as ribose 5-phosphate, to form
sedoheptulose 7-phosphate and glyceraldehyde 3-
phosphate. This enzyme, together with transaldolase,
provides a link between the glycolytic and
pentose-phosphate pathways. TK requires thiamine
pyrophosphate as a cofactor. In most sources where TK
has been purified, it is a homodimer of approximately 70
Kd subunits. TK sequences from a variety of eukaryotic
and prokaryotic sources show that the enzyme has been
evolutionarily conserved. In the peroxisomes of
methylotrophic yeast Hansenula polymorpha, there is a
highly related enzyme, dihydroxy-acetone synthase (DHAS)
(also known as formaldehyde transketolase), which
exhibits a very unusual specificity by including
formaldehyde amongst its substrates.
Length = 136
Score = 88.7 bits (221), Expect = 9e-21
Identities = 29/152 (19%), Positives = 47/152 (30%), Gaps = 35/152 (23%)
Query: 756 CNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGL 815
++ ++E ++GF G ++ L F F + A+ I +SG V
Sbjct: 18 IDTGIAEQAMVGFAAGLALHG---LRPVVEIFFTFFDRAKDQIRSAGASGNVPVV----- 69
Query: 816 VMLLPHGLEGM-GPEHSSARLE-RFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANC 873
G G GP H S E + P +
Sbjct: 70 FRHDGGGGVGEDGPTHHSIEDEALLRAI----P--------------------GLKVVAP 105
Query: 874 TTPANLFHILRRQIALPFRKPLVLMTPKSLLR 905
+ PA +LR I ++ + KSL R
Sbjct: 106 SDPAEAKGLLRAAIRDD-GPVVIRLERKSLYR 136
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 315
Score = 61.4 bits (150), Expect = 6e-10
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 35/198 (17%)
Query: 435 YRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTT 491
YRG+ ++ GD A QG +E+F+++ LP I ++ NN T
Sbjct: 128 YRGNDN----VTACFFGDGA-ANQGQFYESFNMAALWKLP------VIFVIENNLYAMGT 176
Query: 492 DPRFSRSSSYCTDVAR---VVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVS 548
RSSS TD+ + P V+ D AV A E + +++++ +
Sbjct: 177 A--VERSSSV-TDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKT 233
Query: 549 YRRNGHNEIDEPMFTQPLMY-------KIIKKTPPALDKYANKLIEEKVVTEEQVKDVKE 601
YR GH+ D P Y + K+ P ++K +LIE+ + +EE++K++ +
Sbjct: 234 YRFRGHSMSD------PAKYRSKEEVEEWRKRDP--IEKLKARLIEQGIASEEELKEIDK 285
Query: 602 KYDKICEEAYVNARKETH 619
+ EEA A
Sbjct: 286 EVRAEVEEAVEFAENSPE 303
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family,
E1 of PDC_ADC_BCADC subfamily, TPP-binding module;
composed of proteins similar to the E1 components of the
human pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain
alpha-keto acid dehydrogenase/2-oxoisovalerate
dehydrogenase complex (BCADC). PDC catalyzes the
irreversible oxidative decarboxylation of pyruvate to
produce acetyl-CoA in the bridging step between
glycolysis and the citric acid cycle. ADC participates
in the breakdown of acetoin while BCADC participates in
the breakdown of branched chain amino acids. BCADC
catalyzes the oxidative decarboxylation of
4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
3-methyl-2-oxobutanoate (branched chain 2-oxo acids
derived from the transamination of leucine, valine and
isoleucine).
Length = 293
Score = 61.0 bits (149), Expect = 7e-10
Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 28/186 (15%)
Query: 441 GKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSR 497
G+ +++ GD A +G E + + LP I + NN +T SR
Sbjct: 124 GEDRVAVCFFGDGA-TNEGDFHEALNFAALWKLP------VIFVCENNGYAIST--PTSR 174
Query: 498 SSSYCTDVA-RVVNA--PIFHVNSDDPEAVIHVCNLAAEW-RNTFHKDVVIDIVSYRRNG 553
++ T +A R P V+ +D AV A E R +I+ V+YR G
Sbjct: 175 QTA-GTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAG-GGPTLIEAVTYRLGG 232
Query: 554 HNEIDEPMFTQPLMY--KIIKKTPPALD---KYANKLIEEKVVTEEQVKDVKEKYDKICE 608
H+ D+P Y K + D + LIE ++TEE++ ++ + E
Sbjct: 233 HSTSDDPS-----RYRTKEEVEEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVE 287
Query: 609 EAYVNA 614
EA A
Sbjct: 288 EAVEFA 293
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion].
Length = 358
Score = 45.7 bits (109), Expect = 7e-05
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 28/179 (15%)
Query: 453 AAFCG-----QGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTD 504
AF G QG E + + LP + ++ NNQ + RS +
Sbjct: 163 VAFFGDGATNQGDFHEALNFAAVWKLP------VVFVIENNQYAISVP----RSRQTAAE 212
Query: 505 VARV----VNAPIFHVNSDDPEAVIHVCNLAAEW-RNTFHKDVVIDIVSYRRNGHNEIDE 559
+ P V+ +D AV A E R +I+ V+YR GH+ D+
Sbjct: 213 IIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAG-EGPTLIEAVTYRYGGHSTSDD 271
Query: 560 P--MFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARK 616
P ++ + + K+ P + + LIE +++EE+++ ++ + +EA A
Sbjct: 272 PSKYRSKEEVEEWKKRDP--IVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEA 328
>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit
alpha.
Length = 362
Score = 38.5 bits (90), Expect = 0.016
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 19/187 (10%)
Query: 446 SILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGF-TTDPRFSRSSSY 501
+ L+GD A QG +FE +++ DLP I + NN G T + R ++S +Y
Sbjct: 163 AFALYGDGA-ANQGQLFEALNIAALWDLP------VIFVCENNHYGMGTAEWRAAKSPAY 215
Query: 502 CTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPM 561
R P V+ D AV C A E + + +V+++ +YR +GH+ D P
Sbjct: 216 YK---RGDYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSD-PG 270
Query: 562 FTQPLMYKI--IKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETH 619
T +I +++ +++ L+ ++ TE ++KD++++ K ++A V KE+
Sbjct: 271 STYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDA-VAKAKESP 329
Query: 620 IKYKDWL 626
+ L
Sbjct: 330 MPDPSEL 336
>gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring).
Length = 433
Score = 36.1 bits (83), Expect = 0.083
Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 25/199 (12%)
Query: 423 PVVQGKTRAEQFYRG--DGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIH 480
PV G + ++ R E +++ GD C G FE +++ L +
Sbjct: 201 PVATGAAFSSKYRREVLKEESCDDVTLAFFGDGT-CNNGQFFECLNMAALWKLPI---VF 256
Query: 481 IVVNN--QIGF-----TTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAE 533
+V NN IG T+DP + P HV+ D V V A E
Sbjct: 257 VVENNLWAIGMSHLRATSDPEIWKKGP-------AFGMPGVHVDGMDVLKVREVAKEAIE 309
Query: 534 WRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPL-MYKIIKKTP-PALDKYANKLIEEKVV 591
+++ +YR GH+ D P + P AL KY LIE +
Sbjct: 310 RARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYAARDPIAALKKY---LIENGLA 366
Query: 592 TEEQVKDVKEKYDKICEEA 610
TE ++K +++K D++ E+A
Sbjct: 367 TEAELKAIEKKIDEVVEDA 385
>gnl|CDD|235811 PRK06474, PRK06474, hypothetical protein; Provisional.
Length = 178
Score = 32.0 bits (73), Expect = 0.76
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 567 MYKIIKKTPPA-LDKYANKLIEE---KVVTEEQVKDVKEKYDKICEEAYVNARKETHIKY 622
+ KI+K P A L ++ +++ VV E++V+ V EKY I EE I+
Sbjct: 32 LVKILKDVPQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA-------KIEG 84
Query: 623 KDW 625
+W
Sbjct: 85 SEW 87
>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit;
Reviewed.
Length = 341
Score = 32.1 bits (73), Expect = 1.5
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 9/136 (6%)
Query: 479 IHIVVNNQ--IGFTTDPRFSRSSSYCT--DVARVVNAPIFHVNSDDPEAVIHVCNLAAEW 534
I +V NNQ IG RS+S A P V+ D AV V A E
Sbjct: 189 IFVVENNQWAIGMA----HHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVER 244
Query: 535 RNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEE 594
+I+ ++YR GH+ D P + K + K + +I+ ++ +++
Sbjct: 245 ARQGDGPTLIEALTYRFRGHSLAD-PDELRSKQEKEAWVARDPIKKLKSYIIDNELASQK 303
Query: 595 QVKDVKEKYDKICEEA 610
++ ++ + E+A
Sbjct: 304 ELNKIQREVKIEIEQA 319
>gnl|CDD|237828 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 233
Score = 31.3 bits (71), Expect = 1.8
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 237 GGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLETPGIMNMSED 291
G K+ LREI +C + E + + + NW R K E +M + +
Sbjct: 29 GHKKGVKTLREIT-----IWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKK 78
>gnl|CDD|220039 pfam08843, DUF1814, Nucleotidyl transferase of unknown function
(DUF1814). This large family of proteins are largely
uncharacterized. Some are annotated as abortive
infective proteins but support for this annotation could
not be found. This family was recently identified as
belonging to the nucleotidyltransferase superfamily.
Length = 233
Score = 31.1 bits (70), Expect = 2.0
Identities = 13/68 (19%), Positives = 26/68 (38%)
Query: 861 RQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGT 920
R L+D+ + + LR I F + + P L ++ ++D+ +
Sbjct: 159 RDLYDLYLLAQSAELELLDAAELREAILATFEERGTELLPDLLALRELLEADYEDLADAL 218
Query: 921 EFLRVIPD 928
F +PD
Sbjct: 219 LFAGELPD 226
>gnl|CDD|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
metabolism].
Length = 371
Score = 31.5 bits (72), Expect = 2.2
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 456 CGQGVVFETFHLS--DLPDYTTHGTIHIVVNNQIG 488
QG FET H + D P Y G +H V N G
Sbjct: 269 IDQGGCFETSHPTTHDDPTYEVDGVVHYGVANMPG 303
>gnl|CDD|135898 PRK06397, PRK06397, V-type ATP synthase subunit H; Validated.
Length = 111
Score = 29.9 bits (67), Expect = 2.3
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 14/70 (20%)
Query: 569 KIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICE-----------EAYVNARKE 617
KIIK+ ++DK + E+ E ++K+ K KY++ + A + ARKE
Sbjct: 13 KIIKEKEESIDKEIANIKNEQ---ENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKE 69
Query: 618 THIKYKDWLD 627
K + ++
Sbjct: 70 AEKKAVEIIN 79
>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase;
Provisional.
Length = 355
Score = 31.5 bits (72), Expect = 2.4
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 740 YRPLNNLYPDQAPYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIID 799
Y+ L P V ++ ++E G GF +G +M + E F DF A D
Sbjct: 69 YKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIA--EFMFADFIFPA---FD 123
Query: 800 QFISSGQAKWVRQSG------LVMLLPHGLEG-MGPEHS 831
Q ++ AK+ SG +V+ P+G G G HS
Sbjct: 124 QIVNEA-AKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHS 161
>gnl|CDD|220147 pfam09229, Aha1_N, Activator of Hsp90 ATPase, N-terminal. Members
of this family, which are predominantly found in the
protein 'Activator of Hsp90 ATPase' adopt a secondary
structure consisting of an N-terminal alpha-helix
leading into a four-stranded meandering antiparallel
beta-sheet, followed by a C-terminal alpha-helix. The
two helices are packed together, with the beta-sheet
curving around them. They bind to the molecular
chaperone HSP82 and stimulate its ATPase activity.
Length = 137
Score = 29.9 bits (68), Expect = 2.5
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 574 TPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDW-LDSPWSG 632
TP A + L KV+ ++ K + + +A V+ RK I D + WSG
Sbjct: 5 TPWAKEYLKELLKGLKVLEDDDGKVEITEVSSVEGDASVSQRKGKVICIFDLKITLEWSG 64
Query: 633 FFEGKDPLKVS 643
+ ++ KV
Sbjct: 65 ETKDEEEEKVK 75
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 31.1 bits (71), Expect = 3.7
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 529 NLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPM--FTQPL---MYKIIKK---TPPA--- 577
+L + W+ T ++D+ I+ + R + + + F + + M KI + TP
Sbjct: 1009 SLRSAWKETKNEDIAASIIGFIR--QAALGDALVPFEERVDHAMQKIYAERDWTPVQRKW 1066
Query: 578 LDKYANKLIEEKVVTEEQVKD 598
L++ A +L EE V+ +
Sbjct: 1067 LERIAKQLKEEVVLDRDAFDT 1087
>gnl|CDD|222620 pfam14243, DUF4343, Domain of unknown function (DUF4343). This
domain family is found in bacteria, eukaryotes and
viruses, and is typically between 127 and 142 amino
acids in length.
Length = 130
Score = 29.5 bits (67), Expect = 3.8
Identities = 14/49 (28%), Positives = 17/49 (34%)
Query: 511 APIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDE 559
A V+ D P V AEWR V+ YR + E D
Sbjct: 27 AGFASVDEDTPVLVSEPVEFEAEWRLFIVDGKVVTGSLYRGDPRLEPDA 75
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 28.9 bits (65), Expect = 3.8
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 569 KIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKE 617
+ IKK + D+ + EE E+ +K+ +E+ +I EEA A K
Sbjct: 10 REIKKAEISADEEIEEAKEEA---EQIIKEAREEAREIIEEAEEEAEKL 55
>gnl|CDD|233231 TIGR01002, hlyII, beta-channel forming cytolysin. This family of
cytolytic pore-forming proteins includes alpha toxin and
leukocidin F and S subunits from Staphylococcus aureus,
hemolysin II of Bacillus cereus, and related toxins
[Cellular processes, Toxin production and resistance].
Length = 312
Score = 30.5 bits (69), Expect = 3.9
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 3/76 (3%)
Query: 50 GASANYVEEMYRSWQEDPKSVHASWDAFFRS-SSAGALPEDPKSVHASWD--AFFRSSSA 106
+ YV+ Y++ E W F S +AG P S + + F + +
Sbjct: 163 SETIKYVQPDYKTILEKHTDKKIGWKVKFNSFVNAGWGPYGRDSFNPVYGNELFMKGRQS 222
Query: 107 GALPGQAYQPPPTLAP 122
+ +
Sbjct: 223 NLNATDNFLDDNQMPK 238
>gnl|CDD|130736 TIGR01675, plant-AP, plant acid phosphatase. This model represents
a family of acid phosphatase from plants which are most
closely related to the (so called) class B non-specific
acid phosphatase OlpA (TIGR01533, which is believed to
be a 5'-nucleotide phosphatase) and somewhat more
distantly to another class B phosphatase, AphA
(TIGR01672). Together these three clades define a
subfamily (pfam03767) which corresponds to the IIIB
subfamily of the haloacid dehalogenase (HAD) superfamily
of aspartate nucleophile hydrolases. It has been
reported that the best substrate for this enzyme that
could be found was purine 5'-nucleoside phosphates. This
is in concordance with the assignment of the H.
influenzae hel protein (from TIGR01533) as a
5'-nucleotidase, however there is presently no other
evidence to support this specific function for these
plant phosphatases. Many genes from this family have
been annotated as vegetative storage proteins due to
their close homology with these earlier-characterized
gene products which are highly expressed in leaves.
There are significant differences however, including
expression levels and distribution. The most important
difference is the lack in authentic VSPs of the
nucleophilic aspartate residue, which is instead
replaced by serine, glycine or asparagine. Thus these
proteins can not be expected to be active phosphatases.
This issue was confused by the publication in 1992 of an
article claiming activity for the Glycine max VSP. In
1994 this assertion was refuted by the separation of the
activity from the VSP. This model explicitly excludes
the VSPs which lack the nucleophilc aspartate. The
possibility exists, however, that some members of this
family may, while containing all of the conserved
HAD-superfamily catalytic residues, lack activity and
have a function related to the function of the VSPs
rather than the acid phosphatases.
Length = 229
Score = 30.1 bits (68), Expect = 4.0
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 467 LSDLPDYTTHGTIHIVVNNQIGFTTDPR--------FSRSSSYCTDVARVVNAPIFHVNS 518
LS Y + + NN + T P + S Y DV RVV+ F+ S
Sbjct: 10 LSIDYAYCRSWRLGVETNNIRDWDTVPAECKDYVEDYMTSKQYKRDVKRVVDEAYFYAKS 69
>gnl|CDD|222589 pfam14199, DUF4317, Domain of unknown function (DUF4317). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 225 and 451 amino
acids in length. There is a single completely conserved
residue P that may be functionally important.
Length = 370
Score = 30.6 bits (70), Expect = 4.4
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Query: 517 NSDDPEAVIHVCNL---AAEWRNTFH---KDVVIDIVSYR--RNGHNEIDEPMFTQPLMY 568
+ + E V+ C L A E + TF K+V+ + Y +N H ++E M +
Sbjct: 216 HPEFIEEVLG-CELPMTAKEQKETFQAIVKEVLGEDCDYETVQNIHENLNE-MIEE---- 269
Query: 569 KIIKKTPPALDKYA-NKLIEEKVVTEEQVKDVKEKYDKICEEAY 611
+ P LDK KL++E V EE+ + ++ ++++ E Y
Sbjct: 270 HKEEPEPLTLDKKDVKKLLKESGVEEEKTEKFEKSFEEVFGEKY 313
>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid
metabolism].
Length = 245
Score = 30.3 bits (69), Expect = 4.5
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 237 GGKEKALPLREIIKRLEDTYCRSIGAEFM--FINSLEQCNWIRQKLETPGIMNMSEDQKR 294
G K A LREI++ +C +G +++ + S E NW R K E +M + E R
Sbjct: 41 GHKAGAKALREILE-----WCLELGIKYLTLYAFSTE--NWKRPKEEVSFLMELFEKALR 93
Query: 295 LILARLTR 302
L +L +
Sbjct: 94 EELKKLHK 101
>gnl|CDD|237729 PRK14491, PRK14491, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MoeA;
Provisional.
Length = 597
Score = 30.4 bits (69), Expect = 5.0
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 684 QMVESRTVDWALGEAMAFGSLLKEGIHVRLSGQDVERG 721
M E T D G+ ++F +K G +VRL+G+D+ +G
Sbjct: 302 VMRELATQD---GDKVSFDGGIKAGQNVRLAGEDLAQG 336
>gnl|CDD|238397 cd00774, GlyRS-like_core, Glycyl-tRNA synthetase (GlyRS)-like class
II core catalytic domain. GlyRS functions as a homodimer
in eukaryotes, archaea and some bacteria and as a
heterotetramer in the remainder of prokaryotes. It is
responsible for the attachment of glycine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP binding and hydrolysis.
This alignment contains only sequences from the GlyRS
form which homodimerizes. The heterotetramer glyQ is in
a different family of class II aaRS. Class II assignment
is based upon its structure and the presence of three
characteristic sequence motifs. This domain is also
found at the N-terminus of the accessory subunit of
mitochondrial polymerase gamma (Pol gamma b). Pol gamma
b stimulates processive DNA synthesis and is functional
as a homodimer, which can associate with the catalytic
subunit Pol gamma alpha to form a heterotrimer. Despite
significant both structural and sequence similarity with
GlyRS, Pol gamma b lacks conservation of several class
II functional residues.
Length = 254
Score = 29.9 bits (68), Expect = 5.5
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 15/45 (33%)
Query: 529 NLAAEWRNTF---HKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKI 570
N+ + WR +F +D++ EID P+ T LM+K
Sbjct: 37 NIKSAWRKSFVLEEEDML------------EIDSPIITPELMFKT 69
>gnl|CDD|193569 cd08656, M28_like_6, M28 Zn-Peptidases. Peptidase family M28 (also
called aminopeptidase Y family), uncharacterized
subfamily. The M28 family contains aminopeptidases as
well as carboxypeptidases. They have co-catalytic zinc
ions; each zinc ion is tetrahedrally co-ordinated, with
three amino acid ligands plus activated water; one
aspartate residue binds both metal ions.
Length = 281
Score = 29.9 bits (68), Expect = 5.5
Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 27/82 (32%)
Query: 139 GASSHFNEPLSEKIIDDHLAVQALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQELIFHN 198
G + F E E I DDHL V GI D+ D
Sbjct: 207 GYGAFFPEAGGE-ITDDHLPVN----------------KIAGIPTIDIID---------- 239
Query: 199 FWPSSISYAQQLQHKVADMMQK 220
F P + S H +D M+
Sbjct: 240 FDPGNPSGFGPYWHTTSDTMEN 261
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional.
Length = 513
Score = 30.1 bits (68), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 714 SGQDVERGTFSHRHHVLHHQTVDK----ATYRPLNNL 746
+G ++ R FSH H H +T++ A RP NL
Sbjct: 62 AGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANL 98
>gnl|CDD|227507 COG5180, PBP1, Protein interacting with poly(A)-binding protein
[RNA processing and modification].
Length = 654
Score = 30.1 bits (67), Expect = 6.9
Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 23/165 (13%)
Query: 6 AFRKIIPQLSSSPTHSA-SNKVKSKLCVVSSRQQSSVPAAEPFLNGASANYVEEMYRSWQ 64
A R + + + S ++ K K S + F N +EE Y+++
Sbjct: 424 AKRVLFGKSFNMFIKSKEAHDEKKKGDDASENMEPFFIEKPYFTAPTWLNTIEESYKTFF 483
Query: 65 ED-PKSVHASWDAFFRS------------SSAGALPEDPKSV------HASWDAFFRSSS 105
D ++ + F + + A + AS + +
Sbjct: 484 PDEDTAIQEAQTRFQQRQLNSMGNAVPGMNPAMGMNMGGMMGFPMGGPSASPNPMMNGFA 543
Query: 106 AGALPG-QAYQPPPTLAPPSGNQVPISSL--APFVGGASSHFNEP 147
AG++ +QP P PS +P+ A GG S
Sbjct: 544 AGSMGMYMPFQPQPMFYHPSPQMMPVMGSNGAEEGGGNISPHVPA 588
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 29.7 bits (67), Expect = 8.1
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Query: 56 VEEMYRSWQEDPKSVHASWD---AFFRSSSAGALPEDPKSVHASWDAFFRSSSAGALPGQ 112
V + Y + + ++ +S A P +P+ S + +S + + +
Sbjct: 174 VPDDYGANLAVDEPEQSTMSRPQEVKQSVPAQQAPPNPQQPMPSASSESATSKSASTSRE 233
Query: 113 ---AYQPPPTLAPPS 124
Q PP P+
Sbjct: 234 SSPQPQSPPPRRVPA 248
>gnl|CDD|185059 PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding
protein OppA; Provisional.
Length = 543
Score = 29.7 bits (67), Expect = 9.5
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 22/74 (29%)
Query: 576 PALDKY-ANKLIEEKVVTEEQVKDVKEKYDKICEEA--------YVNARKETHIKYKDWL 626
PA DK A L KV E Q + +K ++ ++ YVNAR L
Sbjct: 470 PAFDKLMAETL---KVKDEAQRAALYQKAEQQLDKDSAIVPVYYYVNAR----------L 516
Query: 627 DSPWSGFFEGKDPL 640
PW G + GKDPL
Sbjct: 517 VKPWVGGYTGKDPL 530
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 50,424,624
Number of extensions: 5080410
Number of successful extensions: 4649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4580
Number of HSP's successfully gapped: 42
Length of query: 968
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 862
Effective length of database: 6,236,078
Effective search space: 5375499236
Effective search space used: 5375499236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.2 bits)