RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8742
(968 letters)
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein,
oxidoreductase, thiamine diphosphate, thiamine
pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A
{Escherichia coli} PDB: 2jgd_B*
Length = 933
Score = 1346 bits (3487), Expect = 0.0
Identities = 354/921 (38%), Positives = 489/921 (53%), Gaps = 98/921 (10%)
Query: 47 FLNGASANYVEEMYRSWQEDPKSVHASWDAFFRSSSAGALPEDPKSVHASWDAFFRSSSA 106
+L+GA+ +++E++Y + DP SV A+W + F+ + D
Sbjct: 14 YLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPD----------------- 56
Query: 107 GALPGQAYQPPPTLAPPSGNQVPISSLAPFVGGASSHFNEPLSEKIIDDHLAVQALIRSY 166
Q + S + + V LI +Y
Sbjct: 57 -----QFHSQTREYFRRLAKDASRYS------------STISDPDTNVKQVKVLQLINAY 99
Query: 167 QIRGHHIAQLDPLGIQAADLDDKHPQ-ELIFHNFWPSSISYAQQLQHKVADMMQKETDME 225
+ RGH A LDPLG+ D K + FH+ E D +
Sbjct: 100 RFRGHQHANLDPLGLWQQD---KVADLDPSFHDL--------------------TEADFQ 136
Query: 226 KVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLETPGI 285
+ F +F GKE L E+++ L+ TYC IGAE+M I S E+ WI+Q++E+
Sbjct: 137 ETF--NVGSFASGKETM-KLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESGRA 193
Query: 286 MNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTELGVE 345
+ ++K+ L+ LT A G E +L K+ KRF LEG + LIP +K++I + G
Sbjct: 194 -TFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTR 252
Query: 346 SVVMGMPHRGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNK 405
VV+GM HRGRLNVL NV K + +F +FA G+GDVKYH+G + +
Sbjct: 253 EVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDF--QTDGG 310
Query: 406 NIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETF 465
+ LA+ NPSHLE V PVV G RA + KV+ I +HGDAA GQGVV ET
Sbjct: 311 LVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETL 370
Query: 466 HLSDLPDYTTHGTIHIVVNNQIGFTT-DPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAV 524
++S Y GT+ IV+NNQ+GFTT +P +RS+ YCTD+ ++V APIFHVN+DDPEAV
Sbjct: 371 NMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAV 430
Query: 525 IHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANK 584
V LA ++RNTF +DV ID+V YRR+GHNE DEP TQPLMY+ IKK P YA+K
Sbjct: 431 AFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADK 490
Query: 585 LIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVST 644
L +EKV T E ++ Y + + + + WS + + +
Sbjct: 491 LEQEKVATLEDATEMVNLYRDALDAGDCVVAE---WRPMNMHSFTWSPYL-NHEWDEEYP 546
Query: 645 TGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVES-RTVDWALGEAMAFGS 703
+ L + KR S+ P + + +I R M + DW E +A+ +
Sbjct: 547 NKVEMKRLQELAKRISTVPEA---VEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYAT 603
Query: 704 LLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQAPYTVCNSSLSEF 763
L+ EGI VRLSG+D RGTF HRH V+H+Q+ + +TY PL +++ Q + V +S LSE
Sbjct: 604 LVDEGIPVRLSGEDSGRGTFFHRHAVIHNQS-NGSTYTPLQHIHNGQGAFRVWDSVLSEE 662
Query: 764 GVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGL 823
VL FE G++ P TL WEAQFGDF N AQ +IDQFISSG+ KW R GLVMLLPHG
Sbjct: 663 AVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGY 722
Query: 824 EGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANCTTPANLFHIL 883
EG GPEHSSARLER+LQ+ ++ N + +TPA ++H+L
Sbjct: 723 EGQGPEHSSARLERYLQLCAEQ---------------------NMQVCVPSTPAQVYHML 761
Query: 884 RRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLV 943
RRQ R+PLV+M+PKSLLRHP A SS +++ GT FL I + E V+++V
Sbjct: 762 RRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT-FLPAIGEI--DELDPKGVKRVV 818
Query: 944 FCSGKVYYDLIKARNDNNLGD 964
CSGKVYYDL++ R NN D
Sbjct: 819 MCSGKVYYDLLEQRRKNNQHD 839
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
{Mycobacterium smegmatis}
Length = 1113
Score = 1300 bits (3367), Expect = 0.0
Identities = 337/933 (36%), Positives = 471/933 (50%), Gaps = 129/933 (13%)
Query: 47 FLNGASANYVEEMYRSWQEDPKSVHASWDAFFRSSSAGALPEDPKSVHASWDAFFRSSSA 106
+ GA + D +D FR
Sbjct: 202 IIQGAESGDFLRTIHQLLLDD---------------------------DFFDEIFRELGI 234
Query: 107 GALPGQAYQPPPTLAPPSGNQVPISSLAPFVGGASSHFNEPLSEKIIDDHLAVQALIRSY 166
P + P + I D + V LI +Y
Sbjct: 235 PYEPVRWRTDNP-------------------------------DSIEDKNARVIELIAAY 263
Query: 167 QIRGHHIAQLDPLGIQAADLDDKHPQELIFHNFWPSSISYAQQLQHKVADMMQKETDMEK 226
+ RGH +A +DPL + ++ H D+++
Sbjct: 264 RNRGHLMADIDPLRLDNTRFRSHPDLDVNSHGL--------------------TLWDLDR 303
Query: 227 VFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLETPGIM 286
F G ++ LR+I+ L D YCR +G E+ I EQ WI++++ET
Sbjct: 304 EF---KVDGFAGVQRK-KLRDILSVLRDAYCRHVGVEYTHILEPEQQRWIQERVETKHD- 358
Query: 287 NMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAEILIPAMKQVIDKSTELGVES 346
+ +++ IL++L A FE FL K+ +KRF LEGAE +IP M VID+ E G++
Sbjct: 359 KPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDE 418
Query: 347 VVMGMPHRGRLNVLANVCRKPLEQIFTQFA--ALEAADDGSGDVKYHLGTYIERLNRVTN 404
VV+ MPHRGRLNVLAN+ KP QIF++F + GSGDVKYHLG + +
Sbjct: 419 VVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGD 478
Query: 405 KNIRLAVVANPSHLEAVDPVVQGKTRAEQFYR-----GDGEGKKVMSILLHGDAAFCGQG 459
+I +++ ANPSHLEAVDPV++G RA+Q G V+ ++LHGDAAF GQG
Sbjct: 479 NDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQG 538
Query: 460 VVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSD 519
VV ET +L+ L Y T GTIHIVVNNQIGFTT P SRSS YCTDVA+++ APIFHVN D
Sbjct: 539 VVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGD 598
Query: 520 DPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALD 579
DPEA V LA ++R F KDVVID++ YRR GHNE D+P TQP MY +I +
Sbjct: 599 DPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRK 658
Query: 580 KYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFEGKDP 639
Y LI ++ ++ +D Y E + N +E + +S + + P
Sbjct: 659 AYTEALIGRGDISMKEAEDALRDYQGQLERVF-NEVRELEKHEIEPSESVEADQ---QIP 714
Query: 640 LKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAM 699
K++ T +++ L IG + P F +H + +L+ R +M +DWA E +
Sbjct: 715 SKLA-TAVDKAMLQRIGDAHLALPEG---FTVHPRVRPVLEKRREMAYEGRIDWAFAELL 770
Query: 700 AFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRPLNNLYPDQ------APY 753
A GSL+ EG VRLSGQD +RGTF+ RH V+ + + PL L + +
Sbjct: 771 ALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRK-TGEEFTPLQLLATNPDGTPTGGKF 829
Query: 754 TVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQS 813
V NS+LSEF +GFE G+S+ NP+ +V WEAQFGDF N AQ IID+FISSG+AKW + S
Sbjct: 830 LVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLS 889
Query: 814 GLVMLLPHGLEGMGPEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWIIANC 873
+V+LLPHG EG GP+H+S R+ERFLQ+ + + IA
Sbjct: 890 DVVLLLPHGHEGQGPDHTSGRIERFLQLWAEG---------------------SMTIAMP 928
Query: 874 TTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISE 933
+TPAN FH+LRR ++PL++ TPKS+LR+ A S D E F V+ + ++
Sbjct: 929 STPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESK-FRSVLEEPMYTD 987
Query: 934 R--KADSVEKLVFCSGKVYYDLIKARNDNNLGD 964
+ V +L+ SGK+YY+L + N D
Sbjct: 988 GEGDRNKVTRLLLTSGKIYYELAARKAKENRED 1020
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium
smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Length = 868
Score = 1289 bits (3338), Expect = 0.0
Identities = 330/830 (39%), Positives = 461/830 (55%), Gaps = 71/830 (8%)
Query: 150 EKIIDDHLAVQALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQELIFHNFWPSSISYAQQ 209
+ I D + V LI +Y+ RGH +A +DPL + ++ H
Sbjct: 2 DSIEDKNARVIELIAAYRNRGHLMADIDPLRLDNTRFRSHPDLDVNSHGL---------- 51
Query: 210 LQHKVADMMQKETDMEKVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINS 269
D+++ FK+ G ++ LR+I+ L D YCR +G E+ I
Sbjct: 52 ----------TLWDLDREFKVDG---FAGVQRK-KLRDILSVLRDAYCRHVGVEYTHILE 97
Query: 270 LEQCNWIRQKLETPGIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFGLEGAEILI 329
EQ WI++++ET + +++ IL++L A FE FL K+ +KRF LEGAE +I
Sbjct: 98 PEQQRWIQERVETKHD-KPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVI 156
Query: 330 PAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQFA--ALEAADDGSGD 387
P M VID+ E G++ VV+ MPHRGRLNVLAN+ KP QIF++F + GSGD
Sbjct: 157 PMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGD 216
Query: 388 VKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYR-----GDGEGK 442
VKYHLG + + +I +++ ANPSHLEAVDPV++G RA+Q G
Sbjct: 217 VKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRF 276
Query: 443 KVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYC 502
V+ ++LHGDAAF GQGVV ET +L+ L Y T GTIHIVVNNQIGFTT P SRSS YC
Sbjct: 277 SVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYC 336
Query: 503 TDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMF 562
TDVA+++ APIFHVN DDPEA V LA ++R F KDVVID++ YRR GHNE D+P
Sbjct: 337 TDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSM 396
Query: 563 TQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKY 622
TQP MY +I + Y LI ++ ++ +D Y E + N +E
Sbjct: 397 TQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVF-NEVRELEKHE 455
Query: 623 KDWLDSPWSGFFEGKDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKAR 682
+ +S + + P K++ T +++ L IG + P F +H + +L+ R
Sbjct: 456 IEPSESVEADQ---QIPSKLA-TAVDKAMLQRIGDAHLALPEG---FTVHPRVRPVLEKR 508
Query: 683 LQMVESRTVDWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQTVDKATYRP 742
+M +DWA E +A GSL+ EG VRLSGQD +RGTF+ RH V+ + + P
Sbjct: 509 REMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRK-TGEEFTP 567
Query: 743 LNNLYPDQ------APYTVCNSSLSEFGVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQC 796
L L + + V NS+LSEF +GFE G+S+ NP+ +V WEAQFGDF N AQ
Sbjct: 568 LQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQS 627
Query: 797 IIDQFISSGQAKWVRQSGLVMLLPHGLEGMGPEHSSARLERFLQMSDDEPIRVILVLVPI 856
IID+FISSG+AKW + S +V+LLPHG EG GP+H+S R+ERFLQ+ +
Sbjct: 628 IIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLQLWAEG----------- 676
Query: 857 EFAVRQLHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDM 916
+ IA +TPAN FH+LRR ++PL++ TPKS+LR+ A S D
Sbjct: 677 ----------SMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDF 726
Query: 917 IEGTEFLRVIPDDSISER--KADSVEKLVFCSGKVYYDLIKARNDNNLGD 964
E F V+ + ++ + V +L+ SGK+YY+L + N D
Sbjct: 727 TESK-FRSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAARKAKENRED 775
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 1e-11
Identities = 86/636 (13%), Positives = 175/636 (27%), Gaps = 227/636 (35%)
Query: 171 HHIAQLDPLGIQAADLDDKHPQELIFHNFWPSSISYAQQLQHK-VADMMQ---KETDMEK 226
HH +D + + ++ ++++ F + + K V DM + + +++
Sbjct: 2 HHHHHMD---FETGEHQYQY-KDILSV-FEDA---FVDNFDCKDVQDMPKSILSKEEIDH 53
Query: 227 VFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEF--MFINSLEQCN--WIRQKLET 282
+ RL T E F+ + + N ++ ++T
Sbjct: 54 IIMSKDAV------------SGTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 283 PGIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFG------LEGAEILIPAMKQVI 336
E ++ ++ R+ + R ++ + F L+ L A+ ++
Sbjct: 101 -------EQRQPSMMTRM-----YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 337 DKSTELGVESVVMGMPHRGRLNVL-ANVCR---------------------------KPL 368
V ++ G+ G+ + +VC + L
Sbjct: 149 P---AKNV--LIDGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 369 EQIFTQFAA-LEAADDGSGDVKYHLGTYIERLNR-VTNKNIR--LAV---VANPSHLEAV 421
+++ Q + D S ++K + + L R + +K L V V N A
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 422 DPVVQGK----TRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHL---------S 468
+ + K TR +Q L H E L
Sbjct: 263 N--LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL----TPDEVKSLLLKYLDCRPQ 316
Query: 469 DLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSY----CTDVARVVNA------P------ 512
DLP T + + I + + ++ C + ++ + P
Sbjct: 317 DLPREVL--TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 513 -----IF--HVN--------------SDDPEAVIHVCN---LAAEWRNTF----HKDVVI 544
+F + D V++ + L + + +
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYL 433
Query: 545 DIVSYRRNG---HNEIDEPMFTQPLMYKIIKK------TPPALDKY-------------- 581
++ N H I + Y I K PP LD+Y
Sbjct: 434 ELKVKLENEYALHRSIVD-------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 582 -----------------ANKLIEEKVVTEEQ------VKDVKEKYDK-ICE-----EAYV 612
K+ + ++ +K Y IC+ E V
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLV 545
Query: 613 NA------RKETHI---KYKDW----LDSPWSGFFE 635
NA + E ++ KY D L + FE
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 61.0 bits (147), Expect = 2e-09
Identities = 65/450 (14%), Positives = 125/450 (27%), Gaps = 128/450 (28%)
Query: 554 HNEIDEPMFTQPLMYK-IIKKTPPALDK-YANKLIEE---KVVTEEQVKD-VKEK----- 602
H+ +D YK I+ A + K +++ ++++E++ + K
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 603 ----YDKIC---EEAYVNARKETHIKYKDWLDSPWSGFFEGKDPLKVSTTGINENTLVHI 655
+ + EE +E +L SP E + P + + +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK--TEQRQP-----SMMTRMYIEQR 116
Query: 656 GKRFSSPPPNATEFVIHKGIERILKARLQMVESRTVDWALGEAMA-FG--SLLKEGIHVR 712
+ ++ A V ++ LK R ++E R L + + G + +
Sbjct: 117 DRLYNDNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV---- 170
Query: 713 LSGQDVERGTFSHRHHVLH--HQTVDKATYRPLNNLYPDQAPYTVCNSSLSEFGVLGFE- 769
V+ + L+ + + L L P S S L
Sbjct: 171 CLSYKVQC-KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 770 -------LGFSMTNPNTL-----VC----WEAQFGDFNNTAQC----------IIDQFIS 803
L S N L V W A FN C + D F+S
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNA----FNL--SCKILLTTRFKQVTD-FLS 282
Query: 804 SGQAKWVRQSGLVMLLPHGLEGMGPEHSSARLERFLQMS-DDEPIRVILVLVPIEFAVRQ 862
+ + L H + P+ + L ++L D P R+
Sbjct: 283 AATTTHIS-------LDHHSMTLTPDEVKSLLLKYLDCRPQDLP--------------RE 321
Query: 863 LHDINWIIANCTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEF 922
+ N P L S++ S D + +
Sbjct: 322 VLTTN--------------------------PRRL----SII-----AESIRDGLATWDN 346
Query: 923 LRVIPDDSISERKADSVEKLVFCSGKVYYD 952
+ + D ++ S+ L + +D
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Score = 41.0 bits (95), Expect = 0.002
Identities = 60/389 (15%), Positives = 112/389 (28%), Gaps = 151/389 (38%)
Query: 31 C--VVSSRQQSSVPAAEPFLNGASANYVEEMYRSW---QEDPKSVHASWDAFFRSSSAGA 85
C ++++R + FL+ A+ ++ + S ++ KS+ +
Sbjct: 266 CKILLTTRFKQVTD----FLSAATTTHISLDHHSMTLTPDEVKSLLLKY----LDCRPQD 317
Query: 86 LPEDPKSVH---------------ASWDAF----------FRSSSAGAL-PG---QAYQP 116
LP + + + A+WD + SS L P + +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD- 376
Query: 117 PPTLA--PPSGNQVPISSLAPFVGGASSHFNEPLSEKIIDDHLAVQALI----RSYQIRG 170
L+ PPS + +P L+ ++ + L +L+ + I
Sbjct: 377 --RLSVFPPSAH-IPTILLSLIWFDVIKSDVM-----VVVNKLHKYSLVEKQPKESTISI 428
Query: 171 HHIAQLDPLGIQAADLDDKHPQELIFH------------------NFWPSSISYAQQLQH 212
I L+ L ++ + H + ++ H ++ S I + H
Sbjct: 429 PSI-YLE-LKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-----H 480
Query: 213 -KVADMMQKETDMEKVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLE 271
K + ++ T VF L R
Sbjct: 481 LKNIEHPERMTLFRMVF--------------LDFR------------------------- 501
Query: 272 QCNWIRQKLETPG--------IMNMSEDQK--------------RLILARLTRATGFEAF 309
++ QK+ I+N + K RL+ A L E
Sbjct: 502 ---FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 310 LAR-KWSSEKRFGL--EGAEILIPAMKQV 335
L K++ R L E I A KQV
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit,
somatic form; pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A
3exh_A* 3exg_A 3exf_A*
Length = 365
Score = 64.6 bits (158), Expect = 5e-11
Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 29/192 (15%)
Query: 435 YRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLS---DLPDYTTHGTIHIVVNNQIGFTT 491
Y G E + + L+GD A QG +FE ++++ LP I I NN+ G T
Sbjct: 158 YNGKDE----VCLTLYGDGA-ANQGQIFEAYNMAALWKLP------CIFICENNRYGMGT 206
Query: 492 DPRFSRSSSYCTDVA-RVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYR 550
R+++ TD R P V+ D V AA + + +++++ +YR
Sbjct: 207 --SVERAAA-STDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYR 263
Query: 551 RNGHNEIDEPMFTQPLMY------KIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYD 604
+GH D P + Y + ++ + ++++ + + E++K++ +
Sbjct: 264 YHGHEMSD-PGVS----YRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVR 318
Query: 605 KICEEAYVNARK 616
K E+A A
Sbjct: 319 KEIEDAAQFATA 330
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 8e-09
Identities = 99/577 (17%), Positives = 158/577 (27%), Gaps = 206/577 (35%)
Query: 372 FTQFAALEAADDGSGDVKYHLGTYIERLNR--VTNKNIRLAVVANPSHLEAVDPVVQGKT 429
F + + G L + + +I A+ A L + KT
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH-ALAA---KLLQENDTTLVKT 119
Query: 430 RA--EQFYRGDGEGKKVM-----SILLH----GD----AAFCGQGVVFETFH-LSDLPDY 473
+ + + K+ S L G+ A F GQG + F L DL Y
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL--Y 177
Query: 474 TTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAE 533
T+ + S+ +++ R D + N+
Sbjct: 178 QTYHVL-----------VGDLIKFSAETLSELIRTT--------LDAEKVFTQGLNILE- 217
Query: 534 W---RNTFH-KDVVIDI-VSYRRNGHNEIDEPM--FTQPLMY----KIIKKTPPALDKYA 582
W + KD ++ I +S P+ Q Y K++ TP L Y
Sbjct: 218 WLENPSNTPDKDYLLSIPISC----------PLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 583 NKLI--EEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFE-GKDP 639
+ +VT A A ++ W FF +
Sbjct: 268 KGATGHSQGLVT-----------------AVAIAETDS-----------WESFFVSVRKA 299
Query: 640 LKVSTTGINENTLVHIGKRF------SSPPPNATE-------------FVIHKGIER--- 677
+ V L IG R +S PP+ E I + +
Sbjct: 300 ITV---------LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQV 349
Query: 678 ---ILKARLQMVESRTVDWAL--GEAMAF---G---SLLKEGIHVRL------SGQDVER 720
+ K + + V+ +L G A G SL G+++ L SG D R
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNG-AKNLVVSGPPQSL--YGLNLTLRKAKAPSGLDQSR 406
Query: 721 GTFSHRHHVLHHQ----TV-------DKATYRPLNNLYPDQAPY-----------TVCNS 758
FS R ++ A+ +L + + T S
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 759 SLSEF-GVLGFELGFSM--TNPNTLVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGL 815
L G + + P V WE A I+D F G SGL
Sbjct: 467 DLRVLSGSISERI-VDCIIRLP---VKWETT---TQFKATHILD-FGPGG------ASGL 512
Query: 816 VMLLPHGLEGMGPEHSSARLERFLQMSDDEPIRVILV 852
+L +G G +RVI+
Sbjct: 513 GVLTHRNKDGTG-------------------VRVIVA 530
Score = 57.0 bits (137), Expect = 3e-08
Identities = 87/567 (15%), Positives = 162/567 (28%), Gaps = 197/567 (34%)
Query: 90 PKSVH--AS--WDAFFRSSSAGALPGQAYQPPPTLAPPSGNQVPISS---LAPFVG---- 138
P + AS + F P PT + ++ P + + F+G
Sbjct: 23 PTASFFIASQLQEQF-----------NKILPEPTEGFAADDE-PTTPAELVGKFLGYVSS 70
Query: 139 ----GASSHFNEPLSEKIIDDHLAVQALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQEL 194
F++ L+ L + Y + G+ I L AA L ++ L
Sbjct: 71 LVEPSKVGQFDQVLN-------LCLTEFENCY-LEGNDIHAL------AAKLLQENDTTL 116
Query: 195 IFHNFWPSSI-SY--AQQLQHKVADMMQK-------ETDMEKVFKLPSTTFIGG------ 238
+ I +Y A+ + + D ++ F GG
Sbjct: 117 VKTKEL---IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV----AIF-GGQGNTDD 168
Query: 239 --KEKALPLREI---------------IKRLEDTYCRSIGAEFMFINSLEQCNWIRQKLE 281
+E LR++ + L + ++ AE +F L W+
Sbjct: 169 YFEE----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 282 TPGIMNMSEDQKRLILAR-------LTRATGFEAFLARKWSSEKRFGLEGAEILIPAMKQ 334
TP D+ L+ + + + K G E L +K
Sbjct: 225 TP-------DKDYLLSIPISCPLIGVIQLAHYVVTA-------KLLGFTPGE-LRSYLKG 269
Query: 335 VIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIF---------TQFAALEAA---- 381
S L V +V + + +V RK + +F +L +
Sbjct: 270 ATGHSQGL-VTAVAIAETDSWE-SFFVSV-RKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 382 --DDGSGD------VK----YHLGTYIERLNRV--TNKNIRLAVVANPSHLEAVDPVVQG 427
++ G + + Y+ + N K + +++V +L VV G
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-----VVSG 381
Query: 428 KTRAEQFYRGDGEGKKVMSILLHGDAA----------FCGQGVVFET--------FHLSD 469
++ Y +++ L A F + + F FH S
Sbjct: 382 PPQS--LYG--------LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-SH 430
Query: 470 LPDYTTHGTIHIVVNNQIGFTTDPRFSRSSS-----YCT----DVARVVNAPIFHVNSDD 520
L + +V N + F + Y T D+ RV++ I
Sbjct: 431 LLVPASDLINKDLVKNNVSF-------NAKDIQIPVYDTFDGSDL-RVLSGSI------S 476
Query: 521 PEAVIHVCNLAAEWRNTFHKDV--VID 545
V + L +W T ++D
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILD 503
Score = 55.4 bits (133), Expect = 9e-08
Identities = 58/345 (16%), Positives = 95/345 (27%), Gaps = 111/345 (32%)
Query: 657 KRFSSPPPNATEFVIHKG-----IERILKAR-LQMVESRTVDWALGEAMAFGSLLKEGI- 709
++F+ P TE E L + L V S V+ + F +L +
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAE--LVGKFLGYV-SSLVEP--SKVGQFDQVLNLCLT 89
Query: 710 ---HVRLSGQDV----------ERGTFSHRHHVLHHQTVDKATY-------RPLNNLYP- 748
+ L G D+ T ++ K RP +
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELI------KNYITARIMAKRPFDKKSNS 143
Query: 749 --------DQAP-YTVCNSSLSEFGVLGFELGFSMTNPNTLVCW-EAQFGDFNNTAQCII 798
A + FG G G NT + E + D T ++
Sbjct: 144 ALFRAVGEGNAQLVAI-------FG--GQ--G------NTDDYFEELR--DLYQTYHVLV 184
Query: 799 DQFISSGQAKWVRQSGLVM----LLPHGLEGMGPEHSSARLERFLQMSDDEPIRVILVLV 854
I + + GL + +L+ + P + L+ +
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLN----------ILEWLENPSNTPDKDYLLSI 234
Query: 855 PIEF---AVRQLHDINWIIANC----TTPANLFHILRRQIALPFRKPLVLMTPKSLLRHP 907
PI V QL ++++ TP L L+ A + LV +
Sbjct: 235 PISCPLIGVIQL--AHYVVT-AKLLGFTPGELRSYLKG--ATGHSQGLVTAVAIA----- 284
Query: 908 EAKS--SFDD----MIE-----GTEFLRVIPDDSISERK-ADSVE 940
E S SF I G P+ S+ DS+E
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Score = 54.7 bits (131), Expect = 2e-07
Identities = 99/631 (15%), Positives = 175/631 (27%), Gaps = 243/631 (38%)
Query: 7 FRKIIPQLSSSPTHSASNKVKSKLC------VVSSRQQSSVPAAEPFLNGASANYVEEMY 60
F KI+P+ + ++L V S + S V + LN E Y
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN-LCLTEFENCY 95
Query: 61 -----------RSWQEDPKSVHASWD---AFFRSSSAGALPEDPKSVHASWDAFFRSSSA 106
+ QE+ ++ + + + + P D K S A FR+
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK--SNS--ALFRAVGE 151
Query: 107 GALP------GQAYQPPPTLAPPSGNQVPISSLAPFVGGASSHFNEPLSEKIIDD-HLAV 159
G GQ GN +F E L + + H+ V
Sbjct: 152 GNAQLVAIFGGQ------------GN-------------TDDYFEE-LRD-LYQTYHVLV 184
Query: 160 QALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQELIFHNFWPSSISYAQQLQHKVADMMQ 219
LI+ L L D + Q L W L++
Sbjct: 185 GDLIKF------SAETLSELIRTTLDAEKVFTQGLNILE-W---------LENPSN---- 224
Query: 220 KETDMEKVFKLPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEFMFINSLEQ-CNWI-- 276
P ++ + PL IG + Q +++
Sbjct: 225 ----------TPDKDYLLSIPISCPL--------------IG--------VIQLAHYVVT 252
Query: 277 -RQKLETPGIMN-----MSEDQKRLILARLTRATG-FEAFL-----ARKWSSEKRF--GL 322
+ TPG + + + L+ A T +E+F A F G+
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL----FFIGV 308
Query: 323 EGAE----ILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQFAAL 378
E +P +++ S E G+P + ++ EQ+
Sbjct: 309 RCYEAYPNTSLPP--SILEDSLENN-----EGVPSP-----MLSISNLTQEQVQD----- 351
Query: 379 EAADDGSGDVKYHLGTYIERLNRV--TNKNIRLA--------VVA-NPSHLEAVDPVVQG 427
Y+ + N K + ++ VV+ P L ++ ++
Sbjct: 352 ----------------YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR- 394
Query: 428 KTRA----EQFYRGDGEGKKVM-------------SILLHGDAAFCGQGVVFET--FHLS 468
K +A +Q R +K+ S LL + + +V F+
Sbjct: 395 KAKAPSGLDQ-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 469 DL--PDYTTH---------GTIHIVVNNQIGFTTDP-------RFSRSSSYCTDV----- 505
D+ P Y T G+I + + I P +F +++ D
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCI--IRLPVKWETTTQFK--ATHILDFGPGGA 509
Query: 506 ---------------ARVVNAPIFHVNSDDP 521
RV+ A +N DD
Sbjct: 510 SGLGVLTHRNKDGTGVRVIVAGTLDINPDDD 540
Score = 53.5 bits (128), Expect = 3e-07
Identities = 84/559 (15%), Positives = 150/559 (26%), Gaps = 213/559 (38%)
Query: 2 YRATAF-RKIIPQLSSSPTHSASNKVKSKLCVVSSRQQSSVPAAEPFLNGASANYVEEM- 59
A ++ + S+S A + ++L + Q G + +Y EE+
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ------------GNTDDYFEELR 174
Query: 60 -----YRSWQEDPKSVHASWDAFFRSSSAGALPEDPKSVHASWDAFFRS-------SSAG 107
Y D SA L E ++ + F + +
Sbjct: 175 DLYQTYHVLVGD-----------LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 108 ALPGQAYQPPPTLAPPSGNQVPISSLAPFVGGASSHFNEPLSEKIIDDHLAVQALIRSYQ 167
P + Y L +PIS P +G +Q
Sbjct: 224 NTPDKDY-----LL-----SIPIS--CPLIG-------------------VIQL------ 246
Query: 168 IRGHHIAQLDPLGIQAADLDDK------HPQELI-------------FHN---------F 199
H++ LG +L H Q L+ F F
Sbjct: 247 --AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 200 WPSSISYAQQLQHKV----ADMMQKETDMEKVFKLPSTTF-IGGKEKALPLREIIKRLED 254
+ I + +++ + + +PS I L ++ +
Sbjct: 305 F---IGVRCYEAYPNTSLPPSILEDSLENNE--GVPSPMLSISN----LTQEQVQDYVNK 355
Query: 255 TYCRSIGAEFMFI---N------------SLEQ-CNWIRQKLETPGIMNMSEDQKRLILA 298
T + + I N SL +R K + P DQ R+
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR-KAKAP----SGLDQSRIP-- 408
Query: 299 RLTRATGFEAFLARKWSSEKRFGLE-GA----EILIPAMKQVIDKSTELGVESVVMGMPH 353
F RK RF L + +L+PA + + V +
Sbjct: 409 ----------FSERKLKFSNRF-LPVASPFHSHLLVPASDLINKDLVKNNVSF------N 451
Query: 354 RGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNR-VTNKNIR--LA 410
+ + P+ F DGS D++ G+ ER+ + ++
Sbjct: 452 AKDIQI-------PVYDTF----------DGS-DLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 411 VVANPSHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDL 470
+H+ +D F G G + +L H + G V+
Sbjct: 494 TQFKATHI--LD-----------FGPGGASG---LGVLTHRNKDGTGVRVIVA------- 530
Query: 471 PDYTTHGTIHIVVNNQIGF 489
GT+ I ++ GF
Sbjct: 531 ------GTLDINPDDDYGF 543
Score = 51.2 bits (122), Expect = 2e-06
Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 102/293 (34%)
Query: 176 LDPLGIQAADLDDKHPQELIFHNFWPSSISYAQQLQHKVADMM-----QKETDMEKVFK- 229
D G D+ +P L H ++++ + M+ + EK+FK
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFGGEKG----KRIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 230 ----LPSTTFIGGKEKALPLREIIKRLEDTYCRSIGAEF----MFINSLEQCNWIRQKLE 281
S TF K L T +F + + ++ K
Sbjct: 1710 INEHSTSYTFRSEKGL----------LSAT-------QFTQPALTLMEKAAFEDLKSKGL 1752
Query: 282 TP--------------------GIMNMSEDQKRLILARLTRATGFEAFLARKWSSEKRFG 321
P +M++ E L + R G
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSI-ES-----LVEVVF---------------YR-G 1790
Query: 322 LEGAEILIPAMKQVIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQIFTQFAA---- 377
+ M+ + + ELG + M + GR V A+ ++ L+ + +
Sbjct: 1791 M--------TMQVAVPRD-ELGRSNYGMIAINPGR--VAASFSQEALQYVVERVGKRTGW 1839
Query: 378 -LEAADD---G-----SGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAV 421
+E + +GD++ L T LN + + I + + LE V
Sbjct: 1840 LVEIVNYNVENQQYVAAGDLR-ALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 45.8 bits (108), Expect = 8e-05
Identities = 40/252 (15%), Positives = 83/252 (32%), Gaps = 66/252 (26%)
Query: 569 KIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDS 628
I+ P L + E+ K ++E Y + E V+ + +T +K+ +
Sbjct: 1663 DIVINNPVNLTIH---------FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 629 PWSGFFEG-KDPLKVSTTGINENTLVHIGKRFSSPPPNATEFVIHKGIERILKARLQMVE 687
S F K L +T + T P A ++ K LK++ +
Sbjct: 1714 STSYTFRSEKGLLS-AT----QFT---------QP---AL-TLMEKAAFEDLKSKGLIPA 1755
Query: 688 SRTVDWA---LGE-----AMAFGSL-LKEGIH-VRLSGQDVERGTFSHRHHVLHHQTVDK 737
T A LGE ++A + ++ + V RG + + +
Sbjct: 1756 DATF--AGHSLGEYAALASLA-DVMSIESLVEVVFY------RGMTM--QVAVPRDELGR 1804
Query: 738 ATYRPLNNLYPDQAPYTVCNSSLSEF-GVLGFELGFSMTNPNTLVCWEAQFGDFNNTAQC 796
+ Y + + P + + +L +G G+ + +N Q
Sbjct: 1805 SNYG-MIAINPGRVAASFSQEALQYVVERVGKRTGW--------LVEIVN---YNVENQ- 1851
Query: 797 IIDQFISSGQAK 808
Q++++G +
Sbjct: 1852 ---QYVAAGDLR 1860
Score = 30.4 bits (68), Expect = 3.7
Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 25/124 (20%)
Query: 460 VVFETFHLSDLPDYTTHG--TIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVN 517
+ ++ +D T+G + IV+NN + T + + +A IF
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR----IRENYSAMIFETI 1696
Query: 518 SDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNE-IDEPMFTQPLM-------YK 569
D F K++ SY + FTQP + ++
Sbjct: 1697 VDGKLKT----------EKIF-KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 570 IIKK 573
+K
Sbjct: 1746 DLKS 1749
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.11 PDB: 2bp7_A
Length = 407
Score = 39.3 bits (92), Expect = 0.006
Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 478 TIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNA---PIFHVNSDDPEAVIHVCNLAAEW 534
I VVNNQ +T + + + T A V+ +D AV AAE
Sbjct: 234 VILNVVNNQWAIST-FQ-AIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAER 291
Query: 535 RNTFHKDVVIDIVSYRRNGHNEIDEPMF--TQPLMYKIIKKTPPALDKYANKLIEEKVVT 592
+I+ V+YR H+ D+P P + + LI+ +
Sbjct: 292 ARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLGDP--IARLKQHLIKIGHWS 349
Query: 593 EEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSPWSGFFE 635
EE+ + +++ A A E + + + FE
Sbjct: 350 EEEHQATTAEFEAAVIAAQKEA--EQYGTLANGHIPSAASMFE 390
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.018
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 736 DKATYRPLNN---LY-PDQAPYTVCNSSL 760
+K + L LY D AP +++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A*
1umb_A*
Length = 367
Score = 35.3 bits (82), Expect = 0.088
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 16/105 (15%)
Query: 520 DPEAVIHVCNLAAEW-RNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMY-------KII 571
D A +V A E R ++++ YR H+ D+ Y
Sbjct: 239 DVLASYYVVKEAVERARRG-EGPSLVELRVYRYGPHSSADDDS-----RYRPKEEVAFWR 292
Query: 572 KKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARK 616
KK P + ++ L + EE +DV+E+ E A +
Sbjct: 293 KKDP--IPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEE 335
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 34.9 bits (80), Expect = 0.13
Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 20/127 (15%)
Query: 2 YRATAFRKIIPQLSS---SPTHSASNKVKSKLCVVSSRQQSSVPAAEPFLNGASANYVEE 58
+R A + P + + + ++ + + + P+A+ +++
Sbjct: 322 FRE-AISQTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQK 380
Query: 59 MYRSWQEDPKSVHASWDAFFRSSSAGALPEDPKSVHASWDAFFRSSSAGALPGQAYQPPP 118
M + P +A G P+ + P Q Y PPP
Sbjct: 381 MQQQQAAYPPQGYAP-------PPQGYPPQGYPP---------QGYPPQGYPPQGYPPPP 424
Query: 119 TLAPPSG 125
APP G
Sbjct: 425 QGAPPQG 431
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB:
3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Length = 368
Score = 34.5 bits (80), Expect = 0.13
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 520 DPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNE-IDEPMF--TQPLMYKIIKKTPP 576
DP AV A E +I+ + +R H D+P ++ L + KK P
Sbjct: 237 DPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDP- 295
Query: 577 ALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKE 617
L ++ L + + +EE+ +V E+ + +EA A +
Sbjct: 296 -LVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADET 335
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 1.0
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 29/103 (28%)
Query: 518 SDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPA 577
+ +PE++ +WR K + E+D + +K
Sbjct: 81 TQEPESI-------RKWREEQRKRL------------QELDAASKVM--EQEWREKAKKD 119
Query: 578 LDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHI 620
L+++ + EQV+ K ++I ++A+ I
Sbjct: 120 LEEWNQR-------QSEQVEKNKIN-NRIADKAFYQQPDADII 154
Score = 28.6 bits (63), Expect = 8.2
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 583 NKLIEEK-VVTEEQVKDVKEKYDKICEEAYVNARKETHIKYK 623
K ++E ++ ++ +EK K EE + E K K
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQR-QSEQVEKNK 135
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium
tuberculosis} SCOP: d.17.4.25
Length = 170
Score = 29.5 bits (66), Expect = 3.3
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 531 AAEWRNTFHKDVVIDIVSYRRNGHNEIDE 559
W F +D + + G + E
Sbjct: 32 GEGWAGCFTEDGAFEFDGWVIRGRPALRE 60
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 29.1 bits (64), Expect = 7.2
Identities = 13/98 (13%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 526 HVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKL 585
V L E +N+ + + + +++++ +++ +K K+ K
Sbjct: 90 KVSELHQEVKNSLLNEDLEKVKNWQKDAYHK------QIMGGFKETKEAEDGFRKAQKPW 143
Query: 586 IEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYK 623
+ ++++ K+ Y C+E + +E + K +
Sbjct: 144 AK----KMKELEAAKKAYHLACKEERLAMTREMNSKTE 177
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske
non-heme dioxygenase, substrate specificity iron-
sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP:
b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A*
2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A
1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Length = 447
Score = 29.0 bits (65), Expect = 7.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 338 KSTELGVESVVMGMPHRGRLNVLANVCR 365
++GV+ V++ + G + NVCR
Sbjct: 53 VKAKMGVDEVIVSRQNDGSVRAFLNVCR 80
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer,
oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2
d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Length = 460
Score = 29.1 bits (65), Expect = 8.2
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 338 KSTELGVESVVMGMPHRGRLNVLANVCR 365
+ +G + V++ G + V N CR
Sbjct: 72 MTNYMGEDPVMVVRQKNGEIRVFLNQCR 99
>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu
initiative, PSI, midwest center for structural genomics;
1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24
Length = 332
Score = 29.0 bits (64), Expect = 8.9
Identities = 15/127 (11%), Positives = 33/127 (25%), Gaps = 24/127 (18%)
Query: 137 VGGASSHFNEPLSEKI-IDDHL-AVQALIRSYQIRGHHIAQLDPLGIQAADLDDKHPQEL 194
+ + + + + I + L + S + +L + A L +
Sbjct: 124 ISTSYTQYLRRTASMIGVRGELHGTEVDFDSIAVPEGLREELLSIIDVIASLSGEELFRK 183
Query: 195 IFHNFWPSSISYAQQLQHKVADMMQKETDMEKVFKLPSTTFIGGKEKALPLREIIKRLED 254
+ F E + S +G EKA +R +
Sbjct: 184 LDELFSR----------------------SEVRKIVESVKAVGAGEKAKIMRGYCESKGI 221
Query: 255 TYCRSIG 261
+ +G
Sbjct: 222 DFPVVVG 228
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0501 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,307,929
Number of extensions: 965928
Number of successful extensions: 2334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2274
Number of HSP's successfully gapped: 36
Length of query: 968
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 865
Effective length of database: 3,825,930
Effective search space: 3309429450
Effective search space used: 3309429450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.2 bits)