RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8742
(968 letters)
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
dehydrogenase, PP module {Thermus thermophilus [TaxId:
274]}
Length = 362
Score = 83.4 bits (205), Expect = 1e-17
Identities = 31/195 (15%), Positives = 59/195 (30%), Gaps = 3/195 (1%)
Query: 423 PVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIV 482
P+ A + + +G + + + + I
Sbjct: 140 PIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAV---FIA 196
Query: 483 VNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDV 542
NN + D R S D A P + V+ D A +V A E
Sbjct: 197 ENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPS 256
Query: 543 VIDIVSYRRNGHNEIDEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEK 602
++++ YR H+ D+ +P + + ++ L + EE +DV+E+
Sbjct: 257 LVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREE 316
Query: 603 YDKICEEAYVNARKE 617
E A +
Sbjct: 317 IRAELERGLKEAEEA 331
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate
dehydrogenase (PP module) {Human (Homo sapiens) [TaxId:
9606]}
Length = 361
Score = 74.2 bits (181), Expect = 2e-14
Identities = 36/213 (16%), Positives = 80/213 (37%), Gaps = 12/213 (5%)
Query: 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTT 475
+ A P+ G A ++ D L QG +FE ++++ L
Sbjct: 136 GIVGAQVPLGAGIALACKYNGKDE------VCLTLYGDGAANQGQIFEAYNMAALWKL-- 187
Query: 476 HGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWR 535
I I NN+ G T + +S+ R P V+ D V AA +
Sbjct: 188 -PCIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYC 244
Query: 536 NTFHKDVVIDIVSYRRNGHNEIDEPMFTQPL-MYKIIKKTPPALDKYANKLIEEKVVTEE 594
+ +++++ +YR +GH D + + + ++ + ++++ + + E
Sbjct: 245 RSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVE 304
Query: 595 QVKDVKEKYDKICEEAYVNARKETHIKYKDWLD 627
++K++ + K E+A A + ++
Sbjct: 305 ELKEIDVEVRKEIEDAAQFATADPEPPLEELGY 337
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 365
Score = 73.3 bits (179), Expect = 3e-14
Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 10/213 (4%)
Query: 416 SHLEAVDPVVQGKTRAEQFYRGDGEGKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTT 475
+ A G + ++I GD QG +E + +
Sbjct: 139 IIIGAQYIQAAGVALGLKMRGKKA-----VAITYTGDGGTS-QGDFYEGINFAGAFKAPA 192
Query: 476 HGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWR 535
+V NN+ +T + A P V+ DP AV A E
Sbjct: 193 I---FVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERA 249
Query: 536 NTFHKDVVIDIVSYRRNGHNEI-DEPMFTQPLMYKIIKKTPPALDKYANKLIEEKVVTEE 594
+I+ + +R H D+P + + L ++ L + + +EE
Sbjct: 250 INGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEE 309
Query: 595 QVKDVKEKYDKICEEAYVNARKETHIKYKDWLD 627
+ +V E+ + +EA A + K D +
Sbjct: 310 EENNVIEQAKEEIKEAIKKADETPKQKVTDLIS 342
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
9606]}
Length = 395
Score = 69.1 bits (168), Expect = 8e-13
Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 5/178 (2%)
Query: 441 GKKVMSILLHGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSS 500
+ I G+ A + I NN +T
Sbjct: 177 NANRVVICYFGEGAASEGDA----HAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGD 232
Query: 501 YCTDVARVVNAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEP 560
V+ +D AV + A ++ +I+ ++YR + D+
Sbjct: 233 GIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDS 292
Query: 561 MFTQPL-MYKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKE 617
+ + K + + + L+ + EEQ K +++ + EA+ A ++
Sbjct: 293 SAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERK 350
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 65.3 bits (158), Expect = 1e-11
Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 7/181 (3%)
Query: 450 HGDAAFCGQGVVFETFHLSDLPDYTTHGTIHIVVNNQIGFTTDPRFSRSSSYCTDVARVV 509
+ + + +++V N T S+
Sbjct: 209 WIGDGATAESDFHTALTFAHVYRAPVI--LNVVNNQWAISTFQAIAGGESTTFAGRGVGC 266
Query: 510 NAPIFHVNSDDPEAVIHVCNLAAEWRNTFHKDVVIDIVSYRRNGHNEIDEPMFTQPLMYK 569
V+ +D AV AAE +I+ V+YR H+ D+P +P
Sbjct: 267 GIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDW 326
Query: 570 IIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKYDKICEEAYVNARKETHIKYKDWLDSP 629
+ + LI+ +EE+ + +++ A A +Y +
Sbjct: 327 SHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAE-----QYGTLANGH 381
Query: 630 W 630
Sbjct: 382 I 382
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH,
C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 202
Score = 32.1 bits (72), Expect = 0.24
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 568 YKIIKKTPPALDKYANKLIEEKVVTEEQVKDVKEKY 603
I+++ L KL+E++ +T E+ +V + Y
Sbjct: 158 KAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY 193
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 29.6 bits (66), Expect = 1.1
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 568 YKIIKKTPPALDKYANKLIEEKVVTEEQVKDV 599
+II+K LD L+E++ + ++++ +
Sbjct: 159 KEIIRKYRKQLDNIVEILLEKETIEGDELRRI 190
>d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus
subtilis [TaxId: 1423]}
Length = 180
Score = 27.8 bits (61), Expect = 4.3
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 332 MKQVIDKSTELGVESVVMGMPHR 354
++ +I K TELG + + R
Sbjct: 20 LEWIIQKGTELGAHAFIPFQAAR 42
>d1o51a_ d.58.5.4 (A:) Hypothetical protein TM0021 {Thermotoga
maritima [TaxId: 2336]}
Length = 102
Score = 26.9 bits (60), Expect = 4.7
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 821 HGLEGMGPEHSSARLERFLQMSDDEPIRVILVLVP--IEFAVRQLHDI 866
G+ G G F +S D PI + +V I ++++ +I
Sbjct: 41 RGIMGFGH-KRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNI 87
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 27.8 bits (61), Expect = 6.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 828 PEHSSARLERFLQMSDDEPIRVILVL 853
P S+A L+RFL + + I+ I+ +
Sbjct: 23 PSFSTALLDRFLVLVEANDIQPIICI 48
>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 26.9 bits (60), Expect = 6.7
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 828 PEHSSARLERFLQMSDDEPIRVILVLVPIEFAVRQLHDINWI--IANCT 874
P++ RL+ + + +RV+LV V ++ + L ++ + +A+CT
Sbjct: 52 PDYIHGRLQ---SLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCT 97
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 27.4 bits (60), Expect = 6.8
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 828 PEHSSARLERFLQMSDDEPIRVILVL 853
PE S+ +++FL +++ + ++V+
Sbjct: 23 PETSTYIIDKFLVLAEKNELETVMVI 48
>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3
protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 26.8 bits (59), Expect = 6.8
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 87 PEDPKSVHASWDAFFRSSSAGALPGQAYQPPPTLAPPSG 125
P+ K +W + ++ A A P ++ PSG
Sbjct: 82 PKGYKEEEFNWQTYLKTCKAQAAPKSLFENQNITVIPSG 120
>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303
{Haemophilus influenzae [TaxId: 727]}
Length = 174
Score = 27.0 bits (59), Expect = 7.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 332 MKQVIDKSTELGVESVVMGMPHRGRLNVLANVCRKPLEQI 371
M+ I KS ELGV + R + + A K ++Q
Sbjct: 19 MEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQW 58
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 197
Score = 27.1 bits (60), Expect = 8.0
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 585 LIEEKVVTEEQVKDVKEKYD-KICEE--AYVNARKETHIKYKDWL 626
L + +V + V+ K+ ++ A + AR T +++ L
Sbjct: 21 LDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLL 65
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos
taurus) [TaxId: 9913]}
Length = 527
Score = 27.4 bits (60), Expect = 9.4
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 124 SGNQVPISSLAPFVGGASSHFNEP--LSEKIIDDHL 157
+ L + N P LSEKI+ HL
Sbjct: 11 PHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHL 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,700,135
Number of extensions: 179610
Number of successful extensions: 540
Number of sequences better than 10.0: 1
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 22
Length of query: 968
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 874
Effective length of database: 1,116,976
Effective search space: 976237024
Effective search space used: 976237024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)