Query psy8743
Match_columns 154
No_of_seqs 97 out of 99
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 18:05:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ug3_A EIF4GI, eukaryotic prot 100.0 1.6E-29 5.5E-34 213.7 8.4 145 1-154 172-319 (339)
2 3l6a_A Eukaryotic translation 99.9 2.9E-27 1E-31 202.7 11.5 142 1-154 169-324 (364)
3 1paq_A Translation initiation 99.9 8E-27 2.7E-31 184.1 11.5 119 35-154 19-141 (189)
4 3jui_A Translation initiation 99.9 1.5E-25 5E-30 176.1 14.6 119 35-154 11-133 (182)
5 3d3m_A Eukaryotic translation 99.9 5.7E-22 1.9E-26 153.5 10.3 113 41-154 3-128 (168)
6 2ful_A EIF-5, eukaryotic trans 99.3 7.3E-13 2.5E-17 103.6 5.6 69 73-154 48-117 (177)
7 2iu1_A EIF5, eukaryotic transl 99.0 1.5E-09 5.2E-14 86.8 8.0 67 75-154 43-111 (208)
8 1h2v_C 80 kDa nuclear CAP bind 94.4 0.15 5E-06 47.4 8.9 101 42-149 481-590 (771)
9 4b8b_A General negative regula 76.2 43 0.0015 30.3 12.3 97 36-138 445-544 (603)
10 3f7c_A Protein of unknown func 55.8 34 0.0012 26.6 6.6 66 9-74 125-193 (200)
11 1wjt_A Transcription elongatio 42.4 54 0.0018 22.6 5.3 68 42-115 17-88 (103)
12 1pqv_S STP-alpha, transcriptio 39.9 1.4E+02 0.0047 24.3 8.3 63 52-119 16-82 (309)
13 2hl7_A Cytochrome C-type bioge 38.0 43 0.0015 22.5 4.1 30 37-66 43-72 (84)
14 1ic8_A Hepatocyte nuclear fact 37.1 65 0.0022 24.6 5.5 39 41-81 15-53 (194)
15 3u43_A Colicin-E2 immunity pro 36.6 30 0.001 23.9 3.2 39 35-73 29-81 (94)
16 2kw0_A CCMH protein; oxidoredu 36.1 48 0.0016 22.6 4.1 30 37-66 40-69 (90)
17 1unk_A Colicin E7; immunity pr 35.8 33 0.0011 23.4 3.2 35 39-73 34-82 (87)
18 1ifl_A Inovirus; helical virus 34.0 70 0.0024 19.8 4.2 29 75-111 22-50 (53)
19 3b1j_C CP12; alpha/beta fold, 33.3 16 0.00054 19.4 1.0 11 131-141 7-17 (26)
20 1ifk_A Inovirus; helical virus 33.2 74 0.0025 19.5 4.2 29 75-111 20-48 (51)
21 1eum_A Ferritin 1; ECFTNA, met 32.8 1.3E+02 0.0046 21.4 6.6 28 13-40 26-53 (165)
22 4dox_A Coat protein; all helix 32.7 63 0.0022 25.6 4.9 66 52-118 31-108 (226)
23 1lko_A Rubrerythrin all-iron(I 29.7 59 0.002 24.5 4.1 37 13-51 29-65 (191)
24 1r4w_A Glutathione S-transfera 29.5 89 0.003 23.2 5.2 44 10-53 134-179 (226)
25 2bnx_A Diaphanous protein homo 27.4 98 0.0033 25.8 5.5 38 5-42 186-223 (386)
26 2k0d_X IMME7, colicin-E7 immun 26.8 38 0.0013 23.7 2.3 21 53-73 76-96 (101)
27 3tq7_B Microtubule-associated 26.5 46 0.0016 22.3 2.6 30 125-154 28-58 (82)
28 1j30_A 144AA long hypothetical 25.6 71 0.0024 22.4 3.8 28 13-40 29-56 (144)
29 3e6s_A Ferritin; iron storage, 24.3 97 0.0033 22.6 4.4 40 13-53 25-64 (168)
30 2p67_A LAO/AO transport system 24.2 2.7E+02 0.0093 22.1 7.8 42 46-87 288-329 (341)
31 3gbg_A TCP pilus virulence reg 23.1 1.7E+02 0.006 21.9 5.9 61 10-78 198-267 (276)
32 1krq_A Ferritin; H-chain like 22.6 99 0.0034 22.3 4.1 28 13-40 26-53 (167)
33 3g1g_A GAG polyprotein, capsid 20.9 1.7E+02 0.0059 19.8 4.7 68 10-77 13-86 (87)
34 1fr2_A Colicin E9 immunity pro 20.6 2E+02 0.0068 19.2 6.6 58 53-111 9-76 (86)
35 1sxj_C Activator 1 40 kDa subu 20.5 3.1E+02 0.01 21.4 7.8 27 46-72 263-290 (340)
No 1
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.96 E-value=1.6e-29 Score=213.74 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=125.6
Q ss_pred CCCCCCCCCCHHHHHHHHhhcCchhHHHHHHHhhHH--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHH
Q psy8743 1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQ--EAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELI 78 (154)
Q Consensus 1 ~~ffP~~kRs~~~~~~~f~~~gL~~l~~~~~~~~~~--~~~kel~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi 78 (154)
++|||+++| +.++|+++||+++++|+.++.++ ...+|++++|.+++++|.++++|+.+||+.+.++++++++|+
T Consensus 172 ~~f~P~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i~~~~~~~~~~~~~~~ 247 (339)
T 1ug3_A 172 KEFLPEGQD----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLV 247 (339)
T ss_dssp GGTSCTTCC----HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCHHHHTCHHHH
T ss_pred HHhCCCchh----HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhcCChhhCChHHHH
Confidence 479999998 88999999999999999988877 578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hhccchHHHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHhHhhhhhhHHHHHHHHhhcC
Q psy8743 79 VLIWSTVMAQ-VEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154 (154)
Q Consensus 79 ~~iw~~lM~~-vews~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kIl~~LY~ 154 (154)
+++|+++|++ ++|++.. ....+++++|+|||.+|+++. ++|+++|+++|++||++.+.+++|.+|++.|||
T Consensus 248 ~~l~~a~~~~~~~~~~~~----~~~~~~l~~~~pll~~~~~~~-~~ql~~L~alQ~~~~~~~~~~~~l~~~~~~LYd 319 (339)
T 1ug3_A 248 RALMTAVCYSAIIFETPL----RVDVAVLKARAKLLQKYLCDE-QKELQALYALQALVVTLEQPPNLLRMFFDALYD 319 (339)
T ss_dssp HHHHHHHHHHTEECSSSC----EECHHHHHHHHHHHHHHCCSH-HHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhccChHHHHHHHHHHHhC
Confidence 9999999998 5886532 233488999999999999988 999999999999999999999999999999996
No 2
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.9e-27 Score=202.71 Aligned_cols=142 Identities=20% Similarity=0.342 Sum_probs=126.8
Q ss_pred CCCCCCCCCCHHHHHHHHhhcCchhHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHH
Q psy8743 1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVL 80 (154)
Q Consensus 1 ~~ffP~~kRs~~~~~~~f~~~gL~~l~~~~~~~~~~~~~kel~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~~ 80 (154)
++|||+++|+.++|.++|+++||++|+++. +++++|.+++.+|.++++|+.+||+.+.+..++++++|++
T Consensus 169 ~~FlPe~~~~~~~~~e~~~~~~L~~l~~~~----------~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~ 238 (364)
T 3l6a_A 169 QKMLPEIDQNKDRMLEILEGKGLSFLFPLL----------KLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNI 238 (364)
T ss_dssp GGGSCGGGCSHHHHHHHHHHHTCGGGCHHH----------HHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHH
T ss_pred HHhCCccccchhHHHHHHHhCCCcccCCHH----------HHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHH
Confidence 379999999999999999999999999754 6999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh--hcc------------chHHHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHhHhhhhhhHHHH
Q psy8743 81 IWSTVMAQV--EWN------------KKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQ 146 (154)
Q Consensus 81 iw~~lM~~v--ews------------~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~ 146 (154)
+|+++|++| +|| +|+++.. ..+.|++|+|||.+|+++..+.|+++|+.+|.+|++......+|+
T Consensus 239 L~t~v~~~~~~~~~~~~~~~d~~~~~~k~~~~~--~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~~~~~~~l~ 316 (364)
T 3l6a_A 239 LMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQ--EKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLL 316 (364)
T ss_dssp HHHHHHHHHHHHHC----------CCCHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHHHHHHHHHhcccccccccccccccHHHHHH--HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhccccHHHHH
Confidence 999999999 566 2455554 346899999999999999824599999999999999655567889
Q ss_pred HHHHhhcC
Q psy8743 147 KIILLFYK 154 (154)
Q Consensus 147 kIl~~LY~ 154 (154)
+|++.|||
T Consensus 317 ~il~~LYd 324 (364)
T 3l6a_A 317 RFFVHFYD 324 (364)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999996
No 3
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=99.94 E-value=8e-27 Score=184.06 Aligned_cols=119 Identities=12% Similarity=0.166 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhh-hccchHHH-HHHHHHHHHhhHhhH
Q psy8743 35 SQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQV-EWNKKEEL-VAEQALKHLKQFTPL 112 (154)
Q Consensus 35 ~~~~~kel~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~~iw~~lM~~v-ews~k~~~-~~e~a~~~lkk~~pL 112 (154)
...|++|++++|.|++++|+++++|+.+||++++++|+|++||+++||.|+|+++ +|++++.+ ..+++.++|++|+||
T Consensus 19 ~~~F~~Ev~~sL~r~~~e~~~~d~iilEin~lr~a~n~s~~ev~~~v~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~l 98 (189)
T 1paq_A 19 DEDFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLL 98 (189)
T ss_dssp --CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 3469999999999999999999999999999999999999999999999999999 89987655 778999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHhH--hhhhhhHHHHHHHHhhcC
Q psy8743 113 FGAFTDTAPRAELALMLKVQEFCY--ENMNLMRVFQKIILLFYK 154 (154)
Q Consensus 113 L~~F~~~~~~~ql~LL~kvQ~~Cy--e~~~~mk~F~kIl~~LY~ 154 (154)
|.+||++. +.|+.+|+.+|.||+ ++.++++.|++|++.|||
T Consensus 99 l~~~~~~~-~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd 141 (189)
T 1paq_A 99 FKRQAFDE-EEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYD 141 (189)
T ss_dssp GGGTCCSH-HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCc-HHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhcc
Confidence 99999998 999999999999999 899999999999999995
No 4
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=99.93 E-value=1.5e-25 Score=176.11 Aligned_cols=119 Identities=18% Similarity=0.311 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhh--hccc--hHHHHHHHHHHHHhhHh
Q psy8743 35 SQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQV--EWNK--KEELVAEQALKHLKQFT 110 (154)
Q Consensus 35 ~~~~~kel~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~~iw~~lM~~v--ews~--k~~~~~e~a~~~lkk~~ 110 (154)
...|.+|+.++|.|++++|+++++++.+||++++++|+|++||+++||.|+|+++ .|++ ......+++.+.|++|+
T Consensus 11 ~~~F~~Ev~~sl~ra~~e~~~~d~~~LEinslr~a~N~s~~eV~~av~~ail~~~~~~~~~~~~~~~~~~a~~~~i~~~~ 90 (182)
T 3jui_A 11 IKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWS 90 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGGGCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhcccccChhhHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999999998 3665 45677779999999999
Q ss_pred hHHHHhcCCCcHHHHHHHHHHHHHhHhhhhhhHHHHHHHHhhcC
Q psy8743 111 PLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154 (154)
Q Consensus 111 pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kIl~~LY~ 154 (154)
|||.+||++. +.|+++|+.+|.+|+++..+++.|++|++.|||
T Consensus 91 ~ll~~~~~~~-~~q~~lL~ale~~~~~~~~~~~~~~~il~~LYd 133 (182)
T 3jui_A 91 PVFRNYIKRA-ADHLEALAAIEDFFLEHEALGISMAKVLMAFYQ 133 (182)
T ss_dssp HHHHHHCCSH-HHHHHHHHHHHHHHHHCGGGGGGHHHHHHHHHH
T ss_pred HHHHHHhCCH-HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999999999999996
No 5
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=99.87 E-value=5.7e-22 Score=153.47 Aligned_cols=113 Identities=19% Similarity=0.316 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhhc--cc-hHH--H-------HHHHHHHHHhh
Q psy8743 41 ELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEW--NK-KEE--L-------VAEQALKHLKQ 108 (154)
Q Consensus 41 el~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~~iw~~lM~~vew--s~-k~~--~-------~~e~a~~~lkk 108 (154)
+++++|.+++++|.++++|+.+|++.....++|++||++++|+|+|+++.| ++ +.+ + +.+++.++|++
T Consensus 3 ~~~~~L~~~l~~~~~~~~i~~~i~en~~~~~~s~~ev~~al~~avl~~i~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~ 82 (168)
T 3d3m_A 3 KLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLS 82 (168)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHSCGGGGGCHHHHHHHHHHHHHHHHHHHSCCC-------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHhccccccccccccccchhHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999988 43 322 2 45799999999
Q ss_pred HhhHHHHhcCC-CcHHHHHHHHHHHHHhHhhhhhhHHHHHHHHhhcC
Q psy8743 109 FTPLFGAFTDT-APRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154 (154)
Q Consensus 109 ~~pLL~~F~~~-~~~~ql~LL~kvQ~~Cye~~~~mk~F~kIl~~LY~ 154 (154)
|+|+|.+|+++ . ++|+++|+.+|.+|+++..+++.|++|++.|||
T Consensus 83 ~~~ll~~~~~~~~-~~q~~lL~alq~~~~~~~~~~~~~~~il~~LYd 128 (168)
T 3d3m_A 83 FKPVMQKFLHDHV-DLQVSALYALQVHCYNSNFPKGMLLRFFVHFYD 128 (168)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhh
Confidence 99999999996 6 999999999999999998999999999999996
No 6
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=99.35 E-value=7.3e-13 Score=103.63 Aligned_cols=69 Identities=16% Similarity=0.340 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHh-HhhhhhhHHHHHHHHh
Q psy8743 73 PDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC-YENMNLMRVFQKIILL 151 (154)
Q Consensus 73 ~~~evi~~iw~~lM~~vews~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~C-ye~~~~mk~F~kIl~~ 151 (154)
..++++.++|.++|+. ++.++|++|+|||.+||++. ++|+.+|+.+|.+| +++.++++.|++|++.
T Consensus 48 ~~~~~~~vl~~~lf~~------------~i~~~l~k~~~lL~~~~~~~-~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~ 114 (177)
T 2ful_A 48 NDPKIGCVLAQCLFDE------------DIVNEIAEHNAFFTKILVTP-EYEKNFMGGIERFLGLEHKDLIPLLPKILVQ 114 (177)
T ss_dssp TCTTHHHHHHHHSCST------------THHHHTTSCHHHHHHHCCSH-HHHHHHHHHHHHHHHTTCGGGGGGHHHHHHH
T ss_pred hhhHHHHHHHHHHhch------------hHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence 3489999999999962 57789999999999999988 99999999999999 7899999999999999
Q ss_pred hcC
Q psy8743 152 FYK 154 (154)
Q Consensus 152 LY~ 154 (154)
||+
T Consensus 115 LYd 117 (177)
T 2ful_A 115 LYN 117 (177)
T ss_dssp HHH
T ss_pred Hhc
Confidence 995
No 7
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=98.96 E-value=1.5e-09 Score=86.78 Aligned_cols=67 Identities=12% Similarity=0.219 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhhHhhHHHHhcC-CCcHHHHHHHHHHHHHh-HhhhhhhHHHHHHHHhh
Q psy8743 75 QELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTD-TAPRAELALMLKVQEFC-YENMNLMRVFQKIILLF 152 (154)
Q Consensus 75 ~evi~~iw~~lM~~vews~k~~~~~e~a~~~lkk~~pLL~~F~~-~~~~~ql~LL~kvQ~~C-ye~~~~mk~F~kIl~~L 152 (154)
+....++..++++. ++.++|++|+|||.+||+ +. ++|+.+|+.+|.+| ++++.+++.|++|++.|
T Consensus 43 ~~~~~vl~e~lf~~------------~i~~~l~k~~~lL~~~~~~~~-~~Q~~lL~alE~~~~~~~~~~~~~~~~IL~~L 109 (208)
T 2iu1_A 43 AMGPLVLTEVLFNE------------KIREQIKKYRRHFLRFCHNNK-KAQRYLLHGLECVVAMHQAQLISKIPHILKEM 109 (208)
T ss_dssp GGHHHHHHHHHCST------------THHHHHHHTHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 45555666666633 567899999999999998 66 99999999999996 56678999999999999
Q ss_pred cC
Q psy8743 153 YK 154 (154)
Q Consensus 153 Y~ 154 (154)
|+
T Consensus 110 YD 111 (208)
T 2iu1_A 110 YD 111 (208)
T ss_dssp HH
T ss_pred hc
Confidence 95
No 8
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=94.43 E-value=0.15 Score=47.37 Aligned_cols=101 Identities=14% Similarity=0.247 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhcC-------CC-hHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhhHhhHH
Q psy8743 42 LQEQLEEQISEGASIKDIVADIREIANKHC-------IP-DQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLF 113 (154)
Q Consensus 42 l~~~l~~~i~~~~~~~~ii~~ik~~~~~~~-------~~-~~evi~~iw~~lM~~vews~k~~~~~e~a~~~lkk~~pLL 113 (154)
+.+.|..++.+..++++|+..+++...... .+ +...+.++|++++... |+ ... -+...|.+|.++|
T Consensus 481 ~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~v~~q~ll~~G--sk---S~S-H~~~~lery~~~l 554 (771)
T 1h2v_C 481 VALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLA--AK---SFS-HSFSALAKFHEVF 554 (771)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHS--TT---CHH-HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHhchhcccccccccccccchHHHHHHHHHHHHhc--cc---hHH-HHHHHHHHHHHHH
Confidence 567788889888999999999988332211 11 1258889999999775 22 223 5677899999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHhHhhhhh-hHHHHHHH
Q psy8743 114 GAFTDTAPRAELALMLKVQEFCYENMNL-MRVFQKII 149 (154)
Q Consensus 114 ~~F~~~~~~~ql~LL~kvQ~~Cye~~~~-mk~F~kIl 149 (154)
..++.++ ..|+.+|..+-.|.-.+... .-+.-|.+
T Consensus 555 k~l~~~~-~~q~~il~~v~~~W~~~~q~~~ividkll 590 (771)
T 1h2v_C 555 KTLAESD-EGKLHVLRVMFEVWRNHPQMIAVLVDKMI 590 (771)
T ss_dssp HHHTSSH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCH-HHHHHHHHHHHHHHhcCCceEehHHHHHH
Confidence 9999998 99999999999999888654 34444443
No 9
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=76.17 E-value=43 Score=30.33 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhhccch---HHHHHHHHHHHHhhHhhH
Q psy8743 36 QEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKK---EELVAEQALKHLKQFTPL 112 (154)
Q Consensus 36 ~~~~kel~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~~iw~~lM~~vews~k---~~~~~e~a~~~lkk~~pL 112 (154)
.+.++|+..-++++.+++.++++++..++.++.+.+--|.|+-.++..++.+--..=.+ .++.. .| .=|+.+
T Consensus 445 ~dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~i-TA----~LFG~L 519 (603)
T 4b8b_A 445 NDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALAT-TS----VLFGSM 519 (603)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHH-HH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHH-HH----HHHHHH
Confidence 46899999999999999999999999999999988888999999999999876533222 12211 11 126666
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHhHhh
Q psy8743 113 FGAFTDTAPRAELALMLKVQEFCYEN 138 (154)
Q Consensus 113 L~~F~~~~~~~ql~LL~kvQ~~Cye~ 138 (154)
+..=.-++ -.--..|.-|=+.|-++
T Consensus 520 I~~~Ll~~-~~L~iALr~ILeAlrkp 544 (603)
T 4b8b_A 520 ILFQLLRG-FVLDVAFRIIMRFAKEP 544 (603)
T ss_dssp HHTTSSCH-HHHHHHHHHHHHHHTSC
T ss_pred HHHcccCc-chHHHHHHHHHHHHhCC
Confidence 66666665 33323345555556553
No 10
>3f7c_A Protein of unknown function (DUF416); structural genomics, joint center for structural genomics, J protein structure initiative; HET: CIT; 2.00A {Marinobacter aquaeolei VT8}
Probab=55.83 E-value=34 Score=26.64 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=52.3
Q ss_pred CCHHHHHHHHhhcCchh--HHHHHHHhhHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHhhcCCCh
Q psy8743 9 RSDEYFRTVFEEKGLAD--IVKLHMAQASQEAKKELQEQLEEQISEGAS-IKDIVADIREIANKHCIPD 74 (154)
Q Consensus 9 Rs~~~~~~~f~~~gL~~--l~~~~~~~~~~~~~kel~~~l~~~i~~~~~-~~~ii~~ik~~~~~~~~~~ 74 (154)
+|-..|.+.=.+..|++ ++.+.+....-.-+.++|..+.+.+++... ..+.|..+|....+..+|-
T Consensus 125 ~TVa~f~e~~~~~el~~~el~~~~~~h~lm~~E~~~Q~~l~~~L~~~~~~~~e~ik~Lr~~~~~~GvSN 193 (200)
T 3f7c_A 125 RTVMDFVEMSEGEGMDENELVRVFEHHPLLKDDKLFQRDTVMALYYYRTPKEAFLAELRAGAANDGVSN 193 (200)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHGGGCCT
T ss_pred HHHHHHHHHhcCcCCCcHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHcCccc
Confidence 35567777777777766 888888888888899999999999988654 5589999998888776653
No 11
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=42.38 E-value=54 Score=22.64 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHH----HHHHHHHhhhhccchHHHHHHHHHHHHhhHhhHHHH
Q psy8743 42 LQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIV----LIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGA 115 (154)
Q Consensus 42 l~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~----~iw~~lM~~vews~k~~~~~e~a~~~lkk~~pLL~~ 115 (154)
+...|..+.. +.+.++++..++.+ ...+++..-+.. .....+-++ + ..+.+...|...|++|..++..
T Consensus 17 i~k~L~k~~~-~~~~~~~l~~L~~L-~~~~iT~e~L~~T~IGk~Vn~LrKh---~-~~~~V~~lAk~Lv~~WK~~v~~ 88 (103)
T 1wjt_A 17 IAKKLEKMVS-RKKTEGALDLLKKL-NSCQMSIQLLQTTRIGVAVNGVRKH---C-SDKEVVSLAKVLIKNWKRLLDS 88 (103)
T ss_dssp HHHHHHHHHH-TTCCSSHHHHHHHH-HTSCCCHHHHHHTCHHHHHHHHHHH---C-CCSHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHH-hCCCCCHHHHHHcchhHHHHHHHcc---C-CcHHHHHHHHHHHHHHHHHHHH
Confidence 4555666554 35667888888888 556777655433 333333332 1 2245677999999999988754
No 12
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=39.91 E-value=1.4e+02 Score=24.27 Aligned_cols=63 Identities=3% Similarity=0.040 Sum_probs=44.5
Q ss_pred cCCCHHHHHHHHHHHHhhcCCChHHH----HHHHHHHHHhhhhccchHHHHHHHHHHHHhhHhhHHHHhcCC
Q psy8743 52 EGASIKDIVADIREIANKHCIPDQEL----IVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDT 119 (154)
Q Consensus 52 ~~~~~~~ii~~ik~~~~~~~~~~~ev----i~~iw~~lM~~vews~k~~~~~e~a~~~lkk~~pLL~~F~~~ 119 (154)
.+.+.+.++..++.++...+++..-+ ||.....|-++ +...+...|...|++|..++..-...
T Consensus 16 ~~~~~~~~l~~L~~L~~~~~it~~~L~~T~IG~~Vn~lrkh-----~~~~v~~~Ak~Li~~WK~~v~~~~~~ 82 (309)
T 1pqv_S 16 NKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKS-----TNVEISKLVKKMISSWKDAINKNKRS 82 (309)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCHHHHHhCChhHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35778899999999988888885443 23333333322 23457779999999999999886554
No 13
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=38.03 E-value=43 Score=22.47 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy8743 37 EAKKELQEQLEEQISEGASIKDIVADIREI 66 (154)
Q Consensus 37 ~~~kel~~~l~~~i~~~~~~~~ii~~ik~~ 66 (154)
..-+.|...+.+++.+|.+-++|+.++-+.
T Consensus 43 ~iA~dlR~~V~~~l~~G~sd~eI~~~~v~R 72 (84)
T 2hl7_A 43 PIAADLRKQIYGQLQQGKSDGEIVDYMVAR 72 (84)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 344678888999999999999999887654
No 14
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=37.09 E-value=65 Score=24.64 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHH
Q psy8743 41 ELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLI 81 (154)
Q Consensus 41 el~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~~i 81 (154)
|+++.+.++. ..++-++...|+..+...+++..+++..+
T Consensus 15 ~~~~~ie~~~--~e~p~~l~~~Ik~~l~~~gitQ~~lA~~~ 53 (194)
T 1ic8_A 15 HQKAVVETLL--QEDPWRVAKMVKSYLQQHNIPQREVVDTT 53 (194)
T ss_dssp HHHHHHHHHT--TSCHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHH--ccCHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 4556666666 45788999999999999999999988654
No 15
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=36.64 E-value=30 Score=23.86 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHH--------------cCCCHHHHHHHHHHHHhhcCCC
Q psy8743 35 SQEAKKELQEQLEEQIS--------------EGASIKDIVADIREIANKHCIP 73 (154)
Q Consensus 35 ~~~~~kel~~~l~~~i~--------------~~~~~~~ii~~ik~~~~~~~~~ 73 (154)
++.-...+...|.+... .+.+|+.|+..||+.+.++..|
T Consensus 29 ~E~e~d~ll~~fe~iteHP~gSDLIfyP~~~~e~SPEgIv~~IKeWRa~nG~p 81 (94)
T 3u43_A 29 TEEDDNKLVREFERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKEWRAANGKS 81 (94)
T ss_dssp SHHHHHHHHHHHHHHHCCTTTTHHHHSCCTTSCSSHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhCCCCCccCeeeeCCCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 33444456666666652 1467999999999999999887
No 16
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=36.10 E-value=48 Score=22.63 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy8743 37 EAKKELQEQLEEQISEGASIKDIVADIREI 66 (154)
Q Consensus 37 ~~~kel~~~l~~~i~~~~~~~~ii~~ik~~ 66 (154)
..-+.|...+.+++.+|.+-++|+.++-+.
T Consensus 40 ~iA~dlR~~Vre~l~~G~Sd~eI~~~mv~R 69 (90)
T 2kw0_A 40 MIATDLRQKVYELMQEGKSKKEIVDYMVAR 69 (90)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 344678888999999999999999887654
No 17
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=35.80 E-value=33 Score=23.36 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHH--------------cCCCHHHHHHHHHHHHhhcCCC
Q psy8743 39 KKELQEQLEEQIS--------------EGASIKDIVADIREIANKHCIP 73 (154)
Q Consensus 39 ~kel~~~l~~~i~--------------~~~~~~~ii~~ik~~~~~~~~~ 73 (154)
..++...+.+... .+.+|+.|+..||+.+.++..|
T Consensus 34 ~d~lv~hF~~iteHP~gsDLIfYP~~~~edsPEgIv~~iKeWRa~nG~p 82 (87)
T 1unk_A 34 LDVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKP 82 (87)
T ss_dssp HHHHHHHHHHHHCCTTTTHHHHSCCSSCCCSHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCCCCCCeeeeCCCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 3567777776653 2467899999999999999887
No 18
>1ifl_A Inovirus; helical virus; 5.00A {Enterobacteria phage ike} SCOP: h.1.4.1
Probab=34.05 E-value=70 Score=19.78 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhhHhh
Q psy8743 75 QELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTP 111 (154)
Q Consensus 75 ~evi~~iw~~lM~~vews~k~~~~~e~a~~~lkk~~p 111 (154)
.|+++..|..+..-+ ..--++|.+||++.
T Consensus 22 t~~ig~~W~vvv~vv--------~a~~gIklFKKf~s 50 (53)
T 1ifl_A 22 IDLISQTWPVVTTVV--------VAGLVIRLFKKFSS 50 (53)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhheee--------echhhhhhhhhccc
Confidence 588999999887765 45678888888764
No 19
>3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C*
Probab=33.34 E-value=16 Score=19.41 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=8.8
Q ss_pred HHHHhHhhhhh
Q psy8743 131 VQEFCYENMNL 141 (154)
Q Consensus 131 vQ~~Cye~~~~ 141 (154)
+|.||.+|...
T Consensus 7 lE~yC~enPea 17 (26)
T 3b1j_C 7 FGDYCSENPDA 17 (26)
T ss_dssp HHHHHHHCTTS
T ss_pred HHHHHHHCCCc
Confidence 68999998643
No 20
>1ifk_A Inovirus; helical virus; 5.00A {Enterobacteria phage IF1} SCOP: h.1.4.1 PDB: 1nh4_A 2c0w_A 2c0x_A
Probab=33.19 E-value=74 Score=19.52 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhhHhh
Q psy8743 75 QELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTP 111 (154)
Q Consensus 75 ~evi~~iw~~lM~~vews~k~~~~~e~a~~~lkk~~p 111 (154)
.|+++..|..+..-+ ..--++|.+||+++
T Consensus 20 t~~ig~~W~vvv~vv--------~a~~gIKlFKKf~s 48 (51)
T 1ifk_A 20 TEMSGYAWALVVLVV--------GATVGIKLFKKFVS 48 (51)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhheee--------ehhhhhHHHhhhcc
Confidence 588999999887765 45678888888764
No 21
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=32.79 E-value=1.3e+02 Score=21.42 Aligned_cols=28 Identities=7% Similarity=0.024 Sum_probs=23.5
Q ss_pred HHHHHHhhcCchhHHHHHHHhhHHHHHH
Q psy8743 13 YFRTVFEEKGLADIVKLHMAQASQEAKK 40 (154)
Q Consensus 13 ~~~~~f~~~gL~~l~~~~~~~~~~~~~k 40 (154)
.+..+|...||+.+.+|.++++.++.+.
T Consensus 26 ~~a~~~~~~gl~~~a~~f~~~a~eE~~H 53 (165)
T 1eum_A 26 QMSAWCSYHTFEGAAAFLRRHAQEEMTH 53 (165)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999887766544
No 22
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=32.73 E-value=63 Score=25.62 Aligned_cols=66 Identities=11% Similarity=0.081 Sum_probs=45.6
Q ss_pred cCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhh--------ccch---HHHHHHHHHHHHhhH-hhHHHHhcC
Q psy8743 52 EGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVE--------WNKK---EELVAEQALKHLKQF-TPLFGAFTD 118 (154)
Q Consensus 52 ~~~~~~~ii~~ik~~~~~~~~~~~evi~~iw~~lM~~ve--------ws~k---~~~~~e~a~~~lkk~-~pLL~~F~~ 118 (154)
+..+..+-+..|...-....+|...+..++|+-.+--.+ +.+. .....+.+...|+++ ++ |+.||.
T Consensus 31 n~vAT~eei~~I~~~l~~lGvp~~~v~~~~~~la~~Cad~gSS~~~~~~G~~~~~~i~~~~la~~ik~~~~T-LRqfCr 108 (226)
T 4dox_A 31 NLLPSQEQLKSVSTLMVAAKVPAASVTTVALELVNFCYDNGSSAYTTVTGPSSIPEISLAQLASIVKASGTS-LRKFCR 108 (226)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHCCCTTCCCCSBCSSTTCBHHHHHHHHHHTTCC-HHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCCcccccCCcCCCCCccHHHHHHHHHHhCCC-HHHHHH
Confidence 344444555567777778999999999999999885443 3343 223366777888888 55 888885
No 23
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=29.72 E-value=59 Score=24.47 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=28.8
Q ss_pred HHHHHHhhcCchhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy8743 13 YFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQIS 51 (154)
Q Consensus 13 ~~~~~f~~~gL~~l~~~~~~~~~~~~~kel~~~l~~~i~ 51 (154)
.|+.++++.|++.+..|.+.++.++...- ..+.+.+.
T Consensus 29 ~~A~~a~~~G~~~iA~~f~~~A~eE~~HA--~~~~~~l~ 65 (191)
T 1lko_A 29 YFGGQAKKDGFVQISDIFAETADQEREHA--KRLFKFLE 65 (191)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HHHHHHCC
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHHH--HHHHHHHc
Confidence 68899999999999999999888766543 33555554
No 24
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13
Probab=29.50 E-value=89 Score=23.23 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=25.6
Q ss_pred CHHHHHHHHhhcCch--hHHHHHHHhhHHHHHHHHHHHHHHHHHcC
Q psy8743 10 SDEYFRTVFEEKGLA--DIVKLHMAQASQEAKKELQEQLEEQISEG 53 (154)
Q Consensus 10 s~~~~~~~f~~~gL~--~l~~~~~~~~~~~~~kel~~~l~~~i~~~ 53 (154)
+.+.+.+..++.||+ +.-.+...-.+...+..+++....+...|
T Consensus 134 ~~~~L~~~a~~~Gl~~~d~~~~~~~~~s~~~~~~v~~~~~~a~~~g 179 (226)
T 1r4w_A 134 ESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACKYG 179 (226)
T ss_dssp SHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCchhHHHHHHHcCCHHHHHHHHHHHHHHHHCC
Confidence 455666666667775 45555554445556666666655555444
No 25
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=27.37 E-value=98 Score=25.76 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=27.9
Q ss_pred CCCCCCHHHHHHHHhhcCchhHHHHHHHhhHHHHHHHH
Q psy8743 5 PPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKEL 42 (154)
Q Consensus 5 P~~kRs~~~~~~~f~~~gL~~l~~~~~~~~~~~~~kel 42 (154)
|++-+..-|++.-|...||..+++-.+.-.+......+
T Consensus 186 ~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi 223 (386)
T 2bnx_A 186 AEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQL 223 (386)
T ss_dssp CSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHHH
Confidence 55556667899999999999999987765555444443
No 26
>2k0d_X IMME7, colicin-E7 immunity protein; toxin inhibitor; NMR {Escherichia coli}
Probab=26.84 E-value=38 Score=23.75 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCC
Q psy8743 53 GASIKDIVADIREIANKHCIP 73 (154)
Q Consensus 53 ~~~~~~ii~~ik~~~~~~~~~ 73 (154)
+.+|+.|+..||+.+.++..|
T Consensus 76 e~sPEgIvk~IKeWRa~nGkP 96 (101)
T 2k0d_X 76 GGGPEGIVKEIKEWRAANGKP 96 (101)
T ss_dssp TSSGGGHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHcCCc
Confidence 467888999999999988776
No 27
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=26.49 E-value=46 Score=22.35 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhHhhhhh-hHHHHHHHHhhcC
Q psy8743 125 LALMLKVQEFCYENMNL-MRVFQKIILLFYK 154 (154)
Q Consensus 125 l~LL~kvQ~~Cye~~~~-mk~F~kIl~~LY~ 154 (154)
-.=|..|+..|.++..- ..+-.+|..+||.
T Consensus 28 F~KLRdIEiLcQ~~e~~~~~~~~~I~~ILYa 58 (82)
T 3tq7_B 28 FSKLRDIELICQEHESENSPVISGIIGILYA 58 (82)
T ss_dssp HHHHHHHHHHHHTC-----CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHhc
Confidence 34567788888886543 4567888999984
No 28
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1
Probab=25.60 E-value=71 Score=22.41 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=23.6
Q ss_pred HHHHHHhhcCchhHHHHHHHhhHHHHHH
Q psy8743 13 YFRTVFEEKGLADIVKLHMAQASQEAKK 40 (154)
Q Consensus 13 ~~~~~f~~~gL~~l~~~~~~~~~~~~~k 40 (154)
.|+..+++.|++.+.+|.++++.++...
T Consensus 29 ~~A~~a~~~g~~~~a~~f~~~A~eE~~H 56 (144)
T 1j30_A 29 YFAKRADEEGYPEIAGLLRSIAEGETAH 56 (144)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999888776544
No 29
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A
Probab=24.33 E-value=97 Score=22.63 Aligned_cols=40 Identities=8% Similarity=0.083 Sum_probs=27.7
Q ss_pred HHHHHHhhcCchhHHHHHHHhhHHHHHHHHHHHHHHHHHcC
Q psy8743 13 YFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEG 53 (154)
Q Consensus 13 ~~~~~f~~~gL~~l~~~~~~~~~~~~~kel~~~l~~~i~~~ 53 (154)
.+..+|...||+-+..|.+++..++.+. -..-+..+...|
T Consensus 25 ~ma~~f~~~~l~g~a~~f~~~s~EE~~H-A~kl~~~i~~rg 64 (168)
T 3e6s_A 25 SASIWFDQNDWEGMAAYMLAESAEEREH-GLGFVDFANKRN 64 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHHCcCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHcC
Confidence 4678999999999999999887665543 333344444444
No 30
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=24.16 E-value=2.7e+02 Score=22.12 Aligned_cols=42 Identities=0% Similarity=-0.024 Sum_probs=24.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q psy8743 46 LEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMA 87 (154)
Q Consensus 46 l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~~iw~~lM~ 87 (154)
+.+.+.++.+.++++..+.....+..+...-|+.-+...+..
T Consensus 288 l~~~~~~~~~~~~~~~~l~~~v~~~~~~P~~~~~~~~~~~~~ 329 (341)
T 2p67_A 288 VLNHLFANEDFDRYYRQTLLAVKNNTLSPRTGLRQLSEFIQT 329 (341)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHC
T ss_pred HHHHHHhCcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Confidence 333333445555666666666666666666666666555443
No 31
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=23.08 E-value=1.7e+02 Score=21.92 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=34.8
Q ss_pred CHHHHHHHHhhcCchhHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHH---------HHHHHhhcCCChHHHH
Q psy8743 10 SDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVAD---------IREIANKHCIPDQELI 78 (154)
Q Consensus 10 s~~~~~~~f~~~gL~~l~~~~~~~~~~~~~kel~~~l~~~i~~~~~~~~ii~~---------ik~~~~~~~~~~~evi 78 (154)
|+.+|...|++-|.+ ..+|....+-+.+++-|..+ +.++.+|... .+..++...+|..+..
T Consensus 198 S~~~l~r~fk~~G~t-~~~~l~~~Rl~~A~~lL~~~-------~~si~eIA~~~Gf~~~s~F~r~Fkk~~G~tP~~yR 267 (276)
T 3gbg_A 198 NRMILKKELESRGVK-FRELINSIRISYSISLMKTG-------EFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYL 267 (276)
T ss_dssp CHHHHHHHHHTTTCC-HHHHHHHHHHHHHHHHHHHT-------CCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhCC-------CCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHHHHH
Confidence 667777777766665 45666666666555555432 3455555432 3555555555555544
No 32
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Probab=22.58 E-value=99 Score=22.26 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=23.5
Q ss_pred HHHHHHhhcCchhHHHHHHHhhHHHHHH
Q psy8743 13 YFRTVFEEKGLADIVKLHMAQASQEAKK 40 (154)
Q Consensus 13 ~~~~~f~~~gL~~l~~~~~~~~~~~~~k 40 (154)
.+..+|...||+.+.+|.++++.++.+.
T Consensus 26 ~~a~~~~~~gl~~~a~~f~~~a~eE~~H 53 (167)
T 1krq_A 26 SMSSWCYENSLDGAGAFLFAHASEESDH 53 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHcCcHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999887766543
No 33
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=20.93 E-value=1.7e+02 Score=19.78 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=31.6
Q ss_pred CHHHHHHHHhh----cCch-hHHHHHHHh-hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHH
Q psy8743 10 SDEYFRTVFEE----KGLA-DIVKLHMAQ-ASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQEL 77 (154)
Q Consensus 10 s~~~~~~~f~~----~gL~-~l~~~~~~~-~~~~~~kel~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~ev 77 (154)
.-.+|..+|.. ++++ ++=+|...+ ..+....+.+.-|..+-.+...+.|||..|=...+..+++|..+
T Consensus 13 PF~dfVdRl~kal~~eq~~~~vK~~m~~tLlvQNANpdCk~Il~~~~~~~~~~~e~Ik~~l~~~~~~~~~~~~~ 86 (87)
T 3g1g_A 13 SFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTAPLTDQGI 86 (87)
T ss_dssp CHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHSCHHHHHHHHTSCTTCCSHHHHHHHHHHHHC---------
T ss_pred cHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCcccccc
Confidence 44566666554 4555 444443221 22223334444444444333445899999999999999988765
No 34
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=20.56 E-value=2e+02 Score=19.20 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhh---------ccch-HHHHHHHHHHHHhhHhh
Q psy8743 53 GASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVE---------WNKK-EELVAEQALKHLKQFTP 111 (154)
Q Consensus 53 ~~~~~~ii~~ik~~~~~~~~~~~evi~~iw~~lM~~ve---------ws~k-~~~~~e~a~~~lkk~~p 111 (154)
+.+-+|.+..|+.......-++.+.-.+| .-+...++ |... .+.-.+.+++.++.|.+
T Consensus 9 DyTe~Efi~lv~~I~~~~~~~e~e~d~ll-~~f~~~teHP~gSDLIfyP~~~~e~spE~Iv~~ik~wRa 76 (86)
T 1fr2_A 9 DYTEAEFLQLVTTICNADTSSEEELVKLV-THFAEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRA 76 (86)
T ss_dssp GSBHHHHHHHHHHHHTTCSSSHHHHHHHH-HHHHHHHCCTTTTHHHHSCCTTCCCSHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhCCCCChHHHHHHH-HHHHHhcCCCCcCceeecCCCCCCCCHHHHHHHHHHHHH
Confidence 46677788888888777656666552221 11111111 4432 34447788899999975
No 35
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.53 E-value=3.1e+02 Score=21.38 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=11.9
Q ss_pred HHHHHH-cCCCHHHHHHHHHHHHhhcCC
Q psy8743 46 LEEQIS-EGASIKDIVADIREIANKHCI 72 (154)
Q Consensus 46 l~~~i~-~~~~~~~ii~~ik~~~~~~~~ 72 (154)
+.+.+. .|.++.+++..+........+
T Consensus 263 l~~l~~~~g~~~~~i~~~l~~~~~~~~~ 290 (340)
T 1sxj_C 263 LNKVRSAKGLALIDLIEGIVKILEDYEL 290 (340)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 333343 445555555444444443333
Done!