RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8743
(154 letters)
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat,
guanine nucleotide exchange factor, disease mutation,
leukodystrophy; 2.00A {Homo sapiens}
Length = 182
Score = 73.5 bits (180), Expect = 3e-17
Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Query: 35 SQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKK 94
+ + E+ L+ E S ++V +I + + I +E++ ++ V+
Sbjct: 11 IKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMD 70
Query: 95 EELVA----EQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIIL 150
L + L LK ++P+F + L + +++F E+ L K+++
Sbjct: 71 SPLDSSRYCALLLPLLKAWSPVFRNYIKR-AADHLEALAAIEDFFLEHEALGISMAKVLM 129
Query: 151 LFYK 154
FY+
Sbjct: 130 AFYQ 133
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat
repeat, translation; 2.24A {Homo sapiens} SCOP:
a.118.1.14 a.118.1.14
Length = 339
Score = 68.7 bits (167), Expect = 1e-14
Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 6/154 (3%)
Query: 1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
EF+P + + E L + + +EL QLE+ + EG+S + +
Sbjct: 172 KEFLPEGQDIGAFVAEQKVEYTLGEESE--APGQRALPSEELNRQLEKLLKEGSSNQRVF 229
Query: 61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
I ++ I L+ + + V E + LK L +
Sbjct: 230 DWIEANLSEQQIVSNTLVRALMTAVC---YSAIIFETPLRVDVAVLKARAKLLQKYLCD- 285
Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
+ EL + +Q + + Y
Sbjct: 286 EQKELQALYALQALVVTLEQPPNLLRMFFDALYD 319
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat
domain, structural genomics, PSI, protein structure
initiative; 1.90A {Homo sapiens}
Length = 168
Score = 65.9 bits (160), Expect = 2e-14
Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 16/129 (12%)
Query: 40 KELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVM------------- 86
+L+++L +QI S + I I++ + D+ + ++ ++ +
Sbjct: 2 LKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDE 61
Query: 87 -AQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVF 145
KE+L E+ L L F P+ F +++ + +Q CY + +
Sbjct: 62 TDSSSAPSKEQLEQEKQL--LLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGML 119
Query: 146 QKIILLFYK 154
+ + FY
Sbjct: 120 LRFFVHFYD 128
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal
region, MA2 domain, W2 domain, EIF4G2, EIF family
translation; HET: MES PG4; 2.00A {Homo sapiens}
Length = 364
Score = 58.4 bits (140), Expect = 4e-11
Identities = 25/166 (15%), Positives = 63/166 (37%), Gaps = 22/166 (13%)
Query: 1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
+ +P ++ + + E KGL+ + L +L+++L +QI S + I
Sbjct: 169 QKMLPEIDQNKDRMLEILEGKGLSFLFPLL----------KLEKELLKQIKLDPSPQTIY 218
Query: 61 ADIREIANKHCIPDQELIVLIWSTVMAQV------------EWNKKEELVAEQALKHLKQ 108
I++ + D+ + ++ ++ + + + + EQ + L
Sbjct: 219 KWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLS 278
Query: 109 FTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
F P+ F +++ + +Q CY + + + + FY
Sbjct: 279 FKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYD 324
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat,
AA motif; 2.30A {Saccharomyces cerevisiae} SCOP:
a.118.1.14
Length = 189
Score = 50.8 bits (121), Expect = 1e-08
Identities = 14/118 (11%), Positives = 38/118 (32%), Gaps = 5/118 (4%)
Query: 40 KELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVA 99
KE +E + + + ++ + + E+ + + ++ +V + +
Sbjct: 24 KEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLG 83
Query: 100 --EQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENM--NLMRVFQKIILLFY 153
+ +K Q+ LF + LM + E E + ++ Y
Sbjct: 84 PKDAVVKVFNQWGLLFKRQAFD-EEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLY 140
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding,
phosphorylation, protein biosynthesis, translation
inititation; 1.8A {Homo sapiens}
Length = 208
Score = 42.4 bits (99), Expect = 1e-05
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 73 PDQELIVLIWSTVMAQVEWN-KKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKV 131
D+E++ + + E L E+ + +K++ F F +A+ L+ +
Sbjct: 28 SDKEIVAEAERLDVKAMGPLVLTEVLFNEKIREQIKKYRRHFLRFCHNNKKAQRYLLHGL 87
Query: 132 QEFC-YENMNLMRVFQKIILLFYK 154
+ L+ I+ Y
Sbjct: 88 ECVVAMHQAQLISKIPHILKEMYD 111
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 2e-04
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 14/37 (37%)
Query: 100 EQALKH----LKQFTPLFGAFTDTAPRAELALMLKVQ 132
+QALK LK + D+AP AL +K
Sbjct: 19 KQALKKLQASLKLYAD------DSAP----ALAIKAT 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.062
Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 44/128 (34%)
Query: 33 QASQE------------AKKELQEQLEEQISE--GASIKDIVADIREIANKHCIPDQELI 78
Q SQE A +++ + + + G SI DIV + N P L
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN-----N----P-VNLT 1673
Query: 79 VL--------IWSTVMAQV-EWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAEL---- 125
+ I A + E +L E+ K + + + ++T + + L
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST---SYTFRSEKGLLSATQ 1730
Query: 126 ----ALML 129
AL L
Sbjct: 1731 FTQPALTL 1738
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.30
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 31 MAQASQ-----EAKKELQEQLEEQISE-GASIKDIVADIREIANKHCIPDQELIVLIWST 84
+AQA + E+ ++ +E+ +++ E A+ K + + RE A K + +
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKD-LEEW------NQR 126
Query: 85 VMAQVEWNKKEELVAEQALK 104
QVE NK +A++A
Sbjct: 127 QSEQVEKNKINNRIADKAFY 146
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 26.7 bits (60), Expect = 3.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 34 ASQEAKKELQEQLEEQISEGASI 56
S++AK++L+ Q++E I GA +
Sbjct: 308 NSEKAKEKLEAQVKEAIDAGAKV 330
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.8 bits (59), Expect = 4.5
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 14/88 (15%)
Query: 38 AKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKK-EE 96
K+++ + E I E + IR I + ++ +V + E
Sbjct: 886 DDKDVKAKYETSILEHSG-------IRLIEPELFNGYNP----EKKEMIQEVIVEEDLEP 934
Query: 97 LVAEQALKHLKQFTPLFGAFTDTAPRAE 124
A + +QF G D E
Sbjct: 935 FEASKETA--EQFKHQHGDKVDIFEIPE 960
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 25.9 bits (58), Expect = 5.6
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 34 ASQEAKKELQEQLEEQISEGASI 56
A + + EL +Q++ ++EGA +
Sbjct: 311 ARFDLRDELHQQVQASVAEGARL 333
>2g7z_A Conserved hypothetical protein SPY1493; long-fatty acid binding
protein, lipid binding protein, PSI, structural
genomics; HET: MSE HXA; 2.05A {Streptococcus pyogenes}
Length = 282
Score = 26.0 bits (58), Expect = 6.2
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 29/88 (32%)
Query: 14 FRTVFE---EKGLADIVKLHMA-------QASQEAKKELQEQLE---------------- 47
F +E +KG+ DIV +H++ +AS++ + + +
Sbjct: 73 FAETYENLVKKGVTDIVAIHLSPALSGTIEASRQGAEIAEAPVTVLDSGFTDQAMKFQVV 132
Query: 48 ---EQISEGASIKDIVADIREIANKHCI 72
+ GAS+ +I+A ++ I +K +
Sbjct: 133 EAAKMAKAGASLNEILAAVQAIKSKTEL 160
>1mgp_A Hypothetical protein TM841; two domain structure with mixed
alpha/beta structures in BOTH domains, structural
genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP:
c.119.1.1 PDB: 1vpv_A*
Length = 313
Score = 25.7 bits (57), Expect = 6.8
Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 29/88 (32%)
Query: 14 FRTVFE---EKGLADIVKLHMA-------QASQEAKKELQEQLE---------------- 47
F+ + E+ ++ L ++ ++ A KE+ +
Sbjct: 96 FKKRYLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKEVDIPVYVVDTLLASGAIPLPAR 155
Query: 48 ---EQISEGASIKDIVADIREIANKHCI 72
E + GA+I++++ + E
Sbjct: 156 VAREMLENGATIEEVLKKLDERMKNKDF 183
>1j8b_A YBAB; hypothetical protein, structural genomics, structure
function project, S2F, unknown function; HET: MSE;
1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB:
1pug_A
Length = 112
Score = 24.9 bits (55), Expect = 8.1
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 15 RTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGAS 55
+F + GL ++K AQ QE +++QE++ + G S
Sbjct: 2 SHMFGKGGLGGLMK--QAQQMQEKMQKMQEEIAQLEVTGES 40
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural
genomics, P protein structure initiative; HET: MSE;
1.78A {Helicobacter pylori}
Length = 99
Score = 24.6 bits (54), Expect = 8.2
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 31 MAQASQEAKKELQEQLEEQISEGAS 55
+ ++ +L+E+ ++ I S
Sbjct: 11 LLDGMKKEFSQLEEKNKDTIHTSKS 35
>2dt8_A DEGV family protein; fatty acid binding, structural genomics,
NPPSFA, natio project on protein structural and
functional analyses; HET: PLM; 1.48A {Thermus
thermophilus}
Length = 280
Score = 25.3 bits (56), Expect = 9.1
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 28/87 (32%)
Query: 12 EYFRTVFEEKGLADIVKLHMA-------QASQEAKKELQEQLE----------------- 47
+R EE ++ LH++ Q+++ A +E ++
Sbjct: 71 RVYREALEEA--DHVLSLHISGKLSGTVQSAELAAQEFPGRVTVVDTQAASLGVGMMVLR 128
Query: 48 --EQISEGASIKDIVADIREIANKHCI 72
E + EG S++ ++A++ + H +
Sbjct: 129 AKELLEEGQSLEAVLAELERLRRDHFV 155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 9.7
Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 25/133 (18%)
Query: 30 HMAQASQEAK---KELQEQLEEQISEGASIKDIVADIREIANK----HCI----PDQELI 78
HM + E + K++ E+ + KD+ + I +K H I +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 79 VLIWSTVMAQVEWNKKEELVA---EQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC 135
L W+ + +K+EE+V E+ L+ + L T R ++M ++
Sbjct: 66 RLFWTLL------SKQEEMVQKFVEEVLR--INYKFLMSPIK-TEQRQP-SMMTRMYIEQ 115
Query: 136 YENM-NLMRVFQK 147
+ + N +VF K
Sbjct: 116 RDRLYNDNQVFAK 128
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.378
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,361,450
Number of extensions: 134952
Number of successful extensions: 539
Number of sequences better than 10.0: 1
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 64
Length of query: 154
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,328,508
Effective search space: 298667052
Effective search space used: 298667052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)