Query psy8744
Match_columns 116
No_of_seqs 112 out of 1066
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 18:06:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0047|consensus 100.0 1.4E-49 3.1E-54 326.2 9.6 116 1-116 78-297 (505)
2 COG0753 KatE Catalase [Inorgan 100.0 5.6E-48 1.2E-52 320.1 10.4 116 1-116 70-289 (496)
3 cd08156 catalase_clade_3 Clade 100.0 6.9E-43 1.5E-47 289.6 12.4 116 1-116 14-233 (429)
4 PLN02609 catalase 100.0 6.1E-41 1.3E-45 281.2 12.2 116 1-116 71-290 (492)
5 cd08155 catalase_clade_2 Clade 100.0 1.7E-40 3.7E-45 276.0 12.3 116 1-116 17-240 (443)
6 cd08154 catalase_clade_1 Clade 100.0 1.7E-40 3.8E-45 277.4 11.8 116 1-116 56-275 (469)
7 cd00328 catalase Catalase heme 100.0 1.3E-39 2.8E-44 270.4 12.1 116 1-116 14-233 (433)
8 PRK11249 katE hydroperoxidase 100.0 1.1E-39 2.4E-44 284.1 12.0 116 1-116 131-354 (752)
9 cd08157 catalase_fungal Fungal 100.0 1.2E-37 2.6E-42 259.8 12.1 116 1-116 30-249 (451)
10 PF00199 Catalase: Catalase; 100.0 4.7E-31 1E-35 215.9 9.1 116 1-116 54-273 (384)
11 cd08151 AOS Allene oxide synth 99.9 6.1E-24 1.3E-28 171.0 10.6 109 1-116 37-257 (328)
12 cd08153 srpA_like Catalase-lik 99.9 4.5E-23 9.9E-28 163.4 10.8 99 1-105 24-225 (295)
13 cd08150 catalase_like Catalase 99.9 6.3E-23 1.4E-27 161.7 9.6 104 1-116 12-218 (283)
14 cd08152 y4iL_like Catalase-lik 99.8 7.4E-20 1.6E-24 145.8 10.9 100 1-105 15-228 (305)
15 KOG4108|consensus 59.4 13 0.00028 28.1 3.4 41 59-103 91-131 (174)
16 PF10539 Dev_Cell_Death: Devel 54.2 13 0.00028 26.8 2.5 36 2-38 52-91 (130)
17 smart00767 DCD DCD is a plant 41.3 24 0.00052 25.6 2.2 37 2-38 54-91 (132)
18 KOG0091|consensus 35.7 25 0.00055 27.0 1.7 36 55-90 128-181 (213)
19 PRK02749 photosystem I reactio 28.3 38 0.00082 22.0 1.3 13 24-36 32-44 (71)
20 CHL00125 psaE photosystem I su 28.0 34 0.00073 21.8 1.1 14 24-37 31-44 (64)
21 PF12411 Choline_sulf_C: Choli 27.6 36 0.00078 20.9 1.1 16 80-95 13-28 (54)
22 PRK13701 psiB plasmid SOS inhi 25.0 40 0.00087 24.7 1.1 13 23-35 56-68 (144)
23 PF12559 Inhibitor_I10: Serine 24.7 25 0.00053 21.9 0.0 14 24-37 10-23 (56)
24 PF02427 PSI_PsaE: Photosystem 24.6 39 0.00086 21.3 0.9 14 24-37 30-43 (61)
25 PF06971 Put_DNA-bind_N: Putat 20.2 36 0.00079 20.4 0.1 27 55-81 23-49 (50)
No 1
>KOG0047|consensus
Probab=100.00 E-value=1.4e-49 Score=326.16 Aligned_cols=116 Identities=71% Similarity=1.106 Sum_probs=115.3
Q ss_pred CeEEEEECCCchhhhhcccCCCCCceeeeEeceecCCCCCCCCCCCCCCC------------------------------
Q psy8744 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIR------------------------------ 50 (116)
Q Consensus 1 A~G~F~~t~d~s~~t~A~~f~~~gk~tPv~~RFS~~~g~~g~pD~~rd~R------------------------------ 50 (116)
|+||||+|+||++||+|++|+++||+|||++|||||+|++|||||+||||
T Consensus 78 A~GyFEvThDIt~~~~a~~f~kvgk~Tp~~vRFSTV~gE~GSaDT~RDPRGFAvKFYTeeGn~DlVgNNtPVFFiRDpik 157 (505)
T KOG0047|consen 78 AFGYFEVTHDITKYCKADIFSKVGKQTPVLVRFSTVGGESGSADTARDPRGFAVKFYTEEGNWDLVGNNTPVFFIRDPIK 157 (505)
T ss_pred ceeEEEeechHHHHHHHHHHhhccccCceEEEEEeecccCCCcccccCCCcceEEEEeccccceeecCCcceEEeecccc
Confidence 79999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------eeEeCc
Q psy8744 51 --------------------------------------------------------------------------LFRTNQ 56 (116)
Q Consensus 51 --------------------------------------------------------------------------~~~p~~ 56 (116)
||||.|
T Consensus 158 FP~fIHtqKrNPQthlkD~~m~wDf~t~~pEslHqv~~lFsDrGtP~~yrhM~Gyg~hTyk~vNk~G~~~YvkfH~ktdq 237 (505)
T KOG0047|consen 158 FPSFIHTQKRNPQTHLKDPDMFWDFLTLRPESLHQVMFLFSDRGTPDGYRHMNGYGSHTYKMVNKEGKAHYVKFHFKTDQ 237 (505)
T ss_pred cchhhhccCCCchhcccCcchhHHHhhcCHhhhhheeeeeccCCCCcccccccccccceEEEEccCCceEEEEEEEecCC
Confidence 999999
Q ss_pred cccCCCHHHHHHhhCCCCCcchhhHHHHHHCCCCCeEEEEEEeeCcchhccCCCCCCCCC
Q psy8744 57 KIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWNPFDLT 116 (116)
Q Consensus 57 G~~~lt~~ea~~~~~~~pdf~~~dL~~~I~~g~~p~w~l~vQv~~~~d~~~~~~~~~D~T 116 (116)
|+|+|+.|||.+|+|.+|||+++|||++|++|+||+|+||||||+++++++|+|||||||
T Consensus 238 GiKnLt~e~A~~l~gs~pdya~~DLf~aI~~gnyPsW~~yIQvMt~~qa~K~~fnpfDvT 297 (505)
T KOG0047|consen 238 GIKNLTVEEAARLAGSDPDYAIRDLFNAIENGNYPSWTMYIQVMTPEQAEKFRFNPFDVT 297 (505)
T ss_pred CcccCCHHHHHHhcCCCccHHHHHHHHHHHcCCCCceEEEEEeeCHhHhhcCCCCcccee
Confidence 999999999999999999999999999999999999999999999999999999999998
No 2
>COG0753 KatE Catalase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-48 Score=320.08 Aligned_cols=116 Identities=55% Similarity=0.938 Sum_probs=115.3
Q ss_pred CeEEEEECCCchhhhhcccCCCCCceeeeEeceecCCCCCCCCCCCCCCC------------------------------
Q psy8744 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIR------------------------------ 50 (116)
Q Consensus 1 A~G~F~~t~d~s~~t~A~~f~~~gk~tPv~~RFS~~~g~~g~pD~~rd~R------------------------------ 50 (116)
|||+|++|+|+++||+|++|+++||+|||+||||||+|++||||+.||||
T Consensus 70 A~G~F~~t~dis~yT~A~~f~e~Gk~TP~fvRFSTV~g~~gsaDt~RD~RGFA~KfYTeeGNwDlVGNNtPVFFirDa~K 149 (496)
T COG0753 70 AHGYFEVTEDISKYTKAKLFQEVGKKTPVFVRFSTVAGERGSADTVRDVRGFALKFYTEEGNWDLVGNNTPVFFIRDAIK 149 (496)
T ss_pred ceeEEEeccchHhhhcchhhcccCcccceEEEEEeccCCCCCcccccccccceEEEeeccccceeeccCcceEEeeChhh
Confidence 89999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------eeEeCc
Q psy8744 51 --------------------------------------------------------------------------LFRTNQ 56 (116)
Q Consensus 51 --------------------------------------------------------------------------~~~p~~ 56 (116)
||+|+|
T Consensus 150 FPdfiH~~Kp~P~t~l~~~~~~wDF~s~~PES~H~vt~l~SDrGiP~syR~M~GfgvHtf~~vN~~Ge~~~VKfH~k~~q 229 (496)
T COG0753 150 FPDFIHAQKPDPRTNLRDADTFWDFWSLNPESLHQVTWLMSDRGIPASYRHMEGFGVHTFKFVNAKGKRVWVKFHFKPKQ 229 (496)
T ss_pred chhhhhhcCCCCCcccccchhhhhhhhcCcHHHHHHHHHhcCCCCChhhhcCCCccceeEEEEcCCCCEEEEEEEEEecc
Confidence 999999
Q ss_pred cccCCCHHHHHHhhCCCCCcchhhHHHHHHCCCCCeEEEEEEeeCcchhccCCCCCCCCC
Q psy8744 57 KIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWNPFDLT 116 (116)
Q Consensus 57 G~~~lt~~ea~~~~~~~pdf~~~dL~~~I~~g~~p~w~l~vQv~~~~d~~~~~~~~~D~T 116 (116)
|+++|+++||++++|+||||+++|||++|++|+||+|+||||||+++|+++|+|||||+|
T Consensus 230 Gik~Lt~~EA~ki~g~d~d~~~~dL~eaIe~Gd~P~W~l~VQvm~~~da~k~~f~~~D~T 289 (496)
T COG0753 230 GIKNLTWDEAAKLAGKDPDYHQRDLYEAIENGDFPEWDLYVQVMPEEDAEKFDFDPLDLT 289 (496)
T ss_pred ccccCCHHHHHHHhccCccHHHHHHHHHHHcCCCCceEEEEEecChhHhhcCCCCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999998
No 3
>cd08156 catalase_clade_3 Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.
Probab=100.00 E-value=6.9e-43 Score=289.56 Aligned_cols=116 Identities=61% Similarity=0.997 Sum_probs=114.7
Q ss_pred CeEEEEECCCchhhhhcccCCCCCceeeeEeceecCCCCCCCCCCCCCCC------------------------------
Q psy8744 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIR------------------------------ 50 (116)
Q Consensus 1 A~G~F~~t~d~s~~t~A~~f~~~gk~tPv~~RFS~~~g~~g~pD~~rd~R------------------------------ 50 (116)
|+|+|++|+|+++||+|++|+++|++|||++|||+|+|++|+||+.||||
T Consensus 14 a~G~F~~t~d~s~~t~A~~f~~~gk~tPv~vRFStv~G~~gs~Dt~rd~RGfAvKF~t~eG~~DlV~nn~PvFfirdp~~ 93 (429)
T cd08156 14 AFGTFEVTHDITKYTKAKIFSEVGKKTPVFVRFSTVAGERGSADTERDPRGFALKFYTEEGNWDLVGNNTPVFFIRDPIK 93 (429)
T ss_pred EEEEEEECCCchHHHhhhhccCCCceeeEEEecccCCCCCCCCccCCCcCeEEEEEEcCCCceeeeeecCcccccCCHHH
Confidence 69999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------eeEeCc
Q psy8744 51 --------------------------------------------------------------------------LFRTNQ 56 (116)
Q Consensus 51 --------------------------------------------------------------------------~~~p~~ 56 (116)
||+|.|
T Consensus 94 Fp~~i~a~k~~P~t~~~d~~~~~df~~~~Pes~h~~~~l~s~rg~P~sy~~~~~~gvhtf~~vn~~G~~~~Vk~h~~p~~ 173 (429)
T cd08156 94 FPDFIHTQKRNPQTNLKDPDMFWDFWSLSPESLHQVTILFSDRGIPDGYRHMNGYGSHTFSLVNAKGERFWVKFHFKTDQ 173 (429)
T ss_pred hhHhhhccCCCCCCCCCCHHHHHHHHhcChHHHHHHHHHhcCCCCCCCcccCCccccceEEEEcCCCCEEEEEEEEEeCC
Confidence 999999
Q ss_pred cccCCCHHHHHHhhCCCCCcchhhHHHHHHCCCCCeEEEEEEeeCcchhccCCCCCCCCC
Q psy8744 57 KIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWNPFDLT 116 (116)
Q Consensus 57 G~~~lt~~ea~~~~~~~pdf~~~dL~~~I~~g~~p~w~l~vQv~~~~d~~~~~~~~~D~T 116 (116)
|+++|+++||++++|++|||+++|||++|++|++|+|+|+||||+++|+.+|+|||||+|
T Consensus 174 G~~~l~~eea~~~~g~~~d~l~~dL~~~I~~G~~P~w~l~vQv~~~~d~~~~~f~~~D~T 233 (429)
T cd08156 174 GIKNLTNEEAAELAGEDPDYAQRDLFEAIERGDFPSWTLYVQVMPEEDAEKYRFNPFDLT 233 (429)
T ss_pred CCCCCCHHHHHHhhCCCCCHHHHHHHHHHhcCCCceEEEEEEEechhHhhcCCCCCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 4
>PLN02609 catalase
Probab=100.00 E-value=6.1e-41 Score=281.23 Aligned_cols=116 Identities=41% Similarity=0.648 Sum_probs=114.5
Q ss_pred CeEEEEECCCchhhhhcccCCCCCceeeeEeceecCCCCCCCCCCCCCCC------------------------------
Q psy8744 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIR------------------------------ 50 (116)
Q Consensus 1 A~G~F~~t~d~s~~t~A~~f~~~gk~tPv~~RFS~~~g~~g~pD~~rd~R------------------------------ 50 (116)
|+|+|++++++++||+|.+|+++|+++||++|||+++|++|+||+.||+|
T Consensus 71 a~G~F~~t~d~s~~t~a~~f~~~g~~~pv~vRFS~~~G~~~s~D~~rd~RG~AiKf~~~~g~~D~v~nn~PvFf~rdp~~ 150 (492)
T PLN02609 71 AKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDMVGNNFPVFFIRDGMK 150 (492)
T ss_pred EEEEEEECCchhHHHhhhhccCCCceeeEEEEcccCCCCCCCCCcCCCCCeeEEEEEcCCCceeEeeecCceeecCCHHH
Confidence 68999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------eeEeCc
Q psy8744 51 --------------------------------------------------------------------------LFRTNQ 56 (116)
Q Consensus 51 --------------------------------------------------------------------------~~~p~~ 56 (116)
||+|.|
T Consensus 151 Fpd~i~a~k~~P~t~~~dp~~~~dF~~~~PEs~h~~~~l~s~rg~P~syr~~~~~gvhtF~~vn~~G~~~~Vk~h~~p~~ 230 (492)
T PLN02609 151 FPDMVHALKPNPKTHIQEPWRILDFLSHHPESLHMFTFLFDDRGIPQDYRHMEGFGVHTYKLINKAGKAHYVKFHWKPTC 230 (492)
T ss_pred hhHHHhhcCCCCCCCCCChhHHHHHHhcChHHHHHHHHHhcCCCCCCCcccCCcccccceEEECCCCCEEEEEEEEEeCC
Confidence 999999
Q ss_pred cccCCCHHHHHHhhCCCCCcchhhHHHHHHCCCCCeEEEEEEeeCcchhccCCCCCCCCC
Q psy8744 57 KIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWNPFDLT 116 (116)
Q Consensus 57 G~~~lt~~ea~~~~~~~pdf~~~dL~~~I~~g~~p~w~l~vQv~~~~d~~~~~~~~~D~T 116 (116)
|+++|+++||++++|++|||+++|||++|++|++|+|+|+||||+|+|+.+|+|||||+|
T Consensus 231 G~~~l~~eeA~~~~g~~~d~l~~DL~~~I~~G~~P~w~l~vQv~~~~d~~~~~f~~~D~T 290 (492)
T PLN02609 231 GVKNLLDEEAVRVGGSNHSHATQDLYDSIAAGNYPEWKLFIQTMDPEDEDKFDFDPLDVT 290 (492)
T ss_pred CCCCCCHHHHHHhhCCCCcHHHHHHHHHHhcCCCceeEEEEEEcCHHHHhcCCCCCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 5
>cd08155 catalase_clade_2 Clade 2 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 2 catalases are mostly found in bacteria and fungi; they have a large subunit size of 75 to 84 kDa, and bind a heme d group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.
Probab=100.00 E-value=1.7e-40 Score=276.03 Aligned_cols=116 Identities=39% Similarity=0.680 Sum_probs=114.6
Q ss_pred CeEEEEECCCchhhhhcccCCCCCceeeeEeceecCCCCCCCCCCCCCCC------------------------------
Q psy8744 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIR------------------------------ 50 (116)
Q Consensus 1 A~G~F~~t~d~s~~t~A~~f~~~gk~tPv~~RFS~~~g~~g~pD~~rd~R------------------------------ 50 (116)
|+|+|++++++++||+|.+|+++|++|||++|||+++|++++||+.||+|
T Consensus 17 a~G~F~~t~d~~~~t~a~~f~~~g~~~pv~~RFS~~~g~~~s~D~~rd~RG~AiKf~~~~g~~D~v~nn~PvFf~rd~~~ 96 (443)
T cd08155 17 AHGYFQVYESLSQYTKAKFLQDPGKKTPVFVRFSTVAGSRGSADTVRDVRGFAVKFYTEEGNYDLVGNNIPVFFIQDAIK 96 (443)
T ss_pred eEEEEEECCchhHHHhhhhccCCCceeeEEEEcccCCCCCCCCccCCCCCeEEEEEEcCCCceeeeeecCCceecCCHHH
Confidence 68999999999999999999999999999999999999999999999999
Q ss_pred ------------------------------------------------------------------------------ee
Q psy8744 51 ------------------------------------------------------------------------------LF 52 (116)
Q Consensus 51 ------------------------------------------------------------------------------~~ 52 (116)
||
T Consensus 97 Fp~~i~a~k~~P~t~~~dp~~~~~~~~dF~~~~Pes~h~~~~l~s~rg~P~sy~~~~~~gvhtf~~vna~G~~~~Vk~~~ 176 (443)
T cd08155 97 FPDLIHAVKPEPHNEMPQAQSAHDTFWDFVSLQPESAHMVMWAMSDRAIPRSYRMMEGFGVHTFRLVNAQGKSTFVKFHW 176 (443)
T ss_pred hhHHHhhccCCCCCCCCCcchhhhhHHHHHhcChHHHHHHHHHhcCCCCCCCcccCCcccccceEEEcCCCCEEEEEEEE
Confidence 99
Q ss_pred EeCccccCCCHHHHHHhhCCCCCcchhhHHHHHHCCCCCeEEEEEEeeCcchhccCCCCCCCCC
Q psy8744 53 RTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWNPFDLT 116 (116)
Q Consensus 53 ~p~~G~~~lt~~ea~~~~~~~pdf~~~dL~~~I~~g~~p~w~l~vQv~~~~d~~~~~~~~~D~T 116 (116)
+|.||+++|+++||.++++++|||+++||+++|++|+||+|+|+||||+|+|+++|+|||||+|
T Consensus 177 ~p~qG~~~l~~eeA~~~~~~~~d~l~~dL~~~I~~G~~p~w~l~vQv~~~~d~~~~~f~~~D~T 240 (443)
T cd08155 177 KPVLGVHSLVWDEAQKIAGKDPDFHRRDLWEAIESGDYPEWELGVQLIDEEDEFKFDFDILDPT 240 (443)
T ss_pred EeCCCCCCCCHHHHHHhhCCCCchHHHHHHHHHhcCCCceEEEEEEEcCHHHHhcCCCCCCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 6
>cd08154 catalase_clade_1 Clade 1 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 1 catalases are found in bacteria, algae, and plants; they have a relatively small subunit size of 55 to 69 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.
Probab=100.00 E-value=1.7e-40 Score=277.43 Aligned_cols=116 Identities=39% Similarity=0.679 Sum_probs=114.4
Q ss_pred CeEEEEECCCchhhhhcccCCCCCceeeeEeceecCCCCCCCCCCCCCCC------------------------------
Q psy8744 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIR------------------------------ 50 (116)
Q Consensus 1 A~G~F~~t~d~s~~t~A~~f~~~gk~tPv~~RFS~~~g~~g~pD~~rd~R------------------------------ 50 (116)
|+|+|++++++++||+|.+|+++|+++||++|||+++|++++||+.||+|
T Consensus 56 a~G~F~vt~d~~~~t~a~~f~~~g~~~Pv~vRFS~~~g~~~~~D~~rd~RGfAvKf~~~eg~~Dlv~nn~PvFfird~~~ 135 (469)
T cd08154 56 AHGYFEAYGDISDYTRASFLQEPGKKTPVFVRFSTVIHGKGSPETLRDPRGFAVKFYTEEGNWDLVGNNLPVFFIRDAIK 135 (469)
T ss_pred EEEEEEECCchhHHHhhhhccCCCccceeEEecccCCCCCCCCccCCCCCeeEEEEEcCCCceeeeeecCCccccCCHHH
Confidence 68999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------eeEeCc
Q psy8744 51 --------------------------------------------------------------------------LFRTNQ 56 (116)
Q Consensus 51 --------------------------------------------------------------------------~~~p~~ 56 (116)
||+|.|
T Consensus 136 Fp~~i~a~k~~P~t~~~dp~~~~dF~~~~PEs~h~~~~l~s~rg~P~sy~~~~g~gvhtf~~vn~~G~~~~VK~h~~p~~ 215 (469)
T cd08154 136 FPDMIHALKPSPVTNIQDPNRIFDFFSHVPESTHMLTFLYSDWGTPASYRHMDGSGVHTYKWVNAEGKVVYVKYHWKPKQ 215 (469)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHcChHHHHHHHHHhcCCCCCCCcccCCccccceeEEEcCCCCEEEEEEEEEeCC
Confidence 999999
Q ss_pred cccCCCHHHHHHhhCCCCCcchhhHHHHHHCCCCCeEEEEEEeeCcchhccCCCCCCCCC
Q psy8744 57 KIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWNPFDLT 116 (116)
Q Consensus 57 G~~~lt~~ea~~~~~~~pdf~~~dL~~~I~~g~~p~w~l~vQv~~~~d~~~~~~~~~D~T 116 (116)
|+++|+++||++++|++|||+++||+++|++|++|+|+|+||||+|+|+.+|+|||||+|
T Consensus 216 G~~~l~~eeA~~~~g~~~d~l~~dL~~~I~~G~~p~w~l~vQv~~~~D~~~~~f~~~D~T 275 (469)
T cd08154 216 GVKNLTAEEAAEVQGKNFNHATQDLYDAIAAGNYPEWELYVQIMDPKDLDKLDFDPLDDT 275 (469)
T ss_pred CCCCCCHHHHHHhhcCCCcHHHHHHHHHHhcCCCceEEEEEEEcCHHHhhcCCCCCCcCC
Confidence 999999999999999999999999999999998899999999999999999999999998
No 7
>cd00328 catalase Catalase heme-binding enzyme. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Most catalases exist as tetramers of 65KD subunits containing a protoheme IX group buried deep inside the structure. In eukaryotic cells, catalases are located in peroxisomes.
Probab=100.00 E-value=1.3e-39 Score=270.40 Aligned_cols=116 Identities=53% Similarity=0.828 Sum_probs=114.3
Q ss_pred CeEEEEECCCchhhhhcccCCCCCceeeeEeceecCCCCCCCCCCCCCCC------------------------------
Q psy8744 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIR------------------------------ 50 (116)
Q Consensus 1 A~G~F~~t~d~s~~t~A~~f~~~gk~tPv~~RFS~~~g~~g~pD~~rd~R------------------------------ 50 (116)
|+|+|++++++++||+|.+|+++|+++||++|||+++|++++||+.||+|
T Consensus 14 a~G~F~v~~d~~~~t~a~~f~~~g~~~pv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~~g~~D~v~nn~PvFf~~d~~~ 93 (433)
T cd00328 14 AFGYFTAYGDWSDISAAAFFSAIGKKTPVFVRFSTVVGGAGSADTVRDPHGFATKFYTEEGNFDLVGNNTPIFFIRDAIK 93 (433)
T ss_pred eEEEEEECCChhHHHhhhhccCCCceeeEEEecccCCCCCCCCccCCCCCeeEEEEecCCCceeEeeecCceeecCCHHH
Confidence 68999999999999999999998999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------eeEeCc
Q psy8744 51 --------------------------------------------------------------------------LFRTNQ 56 (116)
Q Consensus 51 --------------------------------------------------------------------------~~~p~~ 56 (116)
||+|.|
T Consensus 94 F~~~i~a~k~~P~t~~~d~~~~~~f~~~~Pes~h~~~~~~s~r~~P~sy~~~~~~gvhtf~~vn~~G~~~~vk~~~~p~~ 173 (433)
T cd00328 94 FPDFIHAQKPNPQTALPDADRFWDFLSLRPESLHQVSFLFSDRGIPAAYRHMNGYGSHTFKLVNANGKVHYVKFHWKTDQ 173 (433)
T ss_pred hhHhhhccCCCCCCCCCCHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCcccCCccccceEEEEcCCCCEEEEEEEEEeCC
Confidence 999999
Q ss_pred cccCCCHHHHHHhhCCCCCcchhhHHHHHHCCCCCeEEEEEEeeCcchhccCCCCCCCCC
Q psy8744 57 KIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWNPFDLT 116 (116)
Q Consensus 57 G~~~lt~~ea~~~~~~~pdf~~~dL~~~I~~g~~p~w~l~vQv~~~~d~~~~~~~~~D~T 116 (116)
|+++|+++||+++++++|||+++||+++|++|++|+|+|+||||+++|+++++|||+|+|
T Consensus 174 G~~~l~~eea~~~~~~~~d~l~~dL~~~i~~G~~P~w~l~vQv~~~~d~~~~~f~~~D~T 233 (433)
T cd00328 174 GIANLVWEEAARLAGEDPDYHRQDLFEAIEAGDYPSWELYIQVMTFNDAEKFPFNPLDPT 233 (433)
T ss_pred CCCCCCHHHHHHhhcCCCchhhhhHHHHHhCCCCceEEEEEEEcCHHHHhcCCCCCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 8
>PRK11249 katE hydroperoxidase II; Provisional
Probab=100.00 E-value=1.1e-39 Score=284.12 Aligned_cols=116 Identities=40% Similarity=0.625 Sum_probs=114.7
Q ss_pred CeEEEEECCCchhhhhcccCCCCCceeeeEeceecCCCCCCCCCCCCCCC------------------------------
Q psy8744 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIR------------------------------ 50 (116)
Q Consensus 1 A~G~F~~t~d~s~~t~A~~f~~~gk~tPv~~RFS~~~g~~g~pD~~rd~R------------------------------ 50 (116)
|+|||++|+++++||+|++|+++|++|||++|||+|+|++|+||+.||||
T Consensus 131 a~G~F~~t~~~s~~t~A~~f~~~g~~tPv~~RFStv~G~~gs~Dt~rd~RGfAvKFyt~eGn~Dlvgnn~PvFfi~d~~k 210 (752)
T PRK11249 131 AHGYFQPYKSLSDITKAAFLQDPGKITPVFVRFSTVQGPRGSADTVRDIRGFATKFYTEEGNFDLVGNNTPVFFIQDAIK 210 (752)
T ss_pred EEEEEEECccHHHhhhcccccCCCceeeEEEecccCCCCCCCCCcCCCCCceEEEEEcCCCccceeeecCcceecCCHHH
Confidence 79999999999999999999999999999999999999999999999999
Q ss_pred ------------------------------------------------------------------------------ee
Q psy8744 51 ------------------------------------------------------------------------------LF 52 (116)
Q Consensus 51 ------------------------------------------------------------------------------~~ 52 (116)
||
T Consensus 211 Fpd~iha~k~~P~~~~~~~~~~~~~~~dF~s~~Pes~h~~~~~~s~r~~P~s~r~~~gfgvhtF~~vna~G~~~~VKfh~ 290 (752)
T PRK11249 211 FPDFVHAVKPEPHNEIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHW 290 (752)
T ss_pred hhHHHhhcCCCCCccCcccCCChHHHHHHHhcChHHHHHHHHHhcCCCCCCCcccCCcccccceEEEcCCCCEEEEEEEE
Confidence 99
Q ss_pred EeCccccCCCHHHHHHhhCCCCCcchhhHHHHHHCCCCCeEEEEEEeeCcchhccCCCCCCCCC
Q psy8744 53 RTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWNPFDLT 116 (116)
Q Consensus 53 ~p~~G~~~lt~~ea~~~~~~~pdf~~~dL~~~I~~g~~p~w~l~vQv~~~~d~~~~~~~~~D~T 116 (116)
+|.+|+++|+++||.++++++|||+++||+++|++|+||+|+|+||||+++|+.+|+|||+|+|
T Consensus 291 kP~~G~~~l~~~Ea~~~~~~dpDflr~DL~eaIe~G~~P~WeL~VQl~~~~d~~~~~f~i~D~T 354 (752)
T PRK11249 291 KPVAGKASLVWDEAQKLTGRDPDFHRRDLWEAIEAGDYPEYELGVQLIPEEDEFKFDFDLLDPT 354 (752)
T ss_pred EECCccccCCHHHHHHhcCCCccHHHHHHHHHHHcCCCceEEEEEEEcChHHhccCCCCCCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 9
>cd08157 catalase_fungal Fungal catalases similar to yeast catalases A and T. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. This family of fungal catalases has a relatively small subunit size, and binds a protoheme IX (heme b) group buried deep inside the structure. Fungal catalases also bind NADPH as a second redox-active cofactor. They form tetramers; in eukaryotic cells, catalases are typically located in peroxisomes. Saccharomyces cerevisiae catalase T is found in the cytoplasm, though.
Probab=100.00 E-value=1.2e-37 Score=259.77 Aligned_cols=116 Identities=53% Similarity=0.814 Sum_probs=114.1
Q ss_pred CeEEEEECCCchhhhhcccCCCCCceeeeEeceecCCCCCCCCCCCCCCC------------------------------
Q psy8744 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIR------------------------------ 50 (116)
Q Consensus 1 A~G~F~~t~d~s~~t~A~~f~~~gk~tPv~~RFS~~~g~~g~pD~~rd~R------------------------------ 50 (116)
|+|+|++++++++||+|.+|+.+|++|||++|||+++|++|+||+.||+|
T Consensus 30 a~G~F~vt~d~s~~t~a~~f~~~gk~~pv~vRFSt~~g~~~~~D~~rd~RG~AiKf~t~eg~~DlV~nn~PvFfird~~~ 109 (451)
T cd08157 30 AYGEFEVTDDISDITSADMLQGVGKKTPCLVRFSTVGGEKGSADTVRDPRGFAVKFYTEEGNWDWVFNNTPVFFIRDPIK 109 (451)
T ss_pred EEEEEEECCChhHHHhhhhccCCCceeeEEEecccCCCCCCCCCcCCCcCeEEEEEEcCCCceeeeeecCcccccCCHHH
Confidence 68999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------eeEeCc
Q psy8744 51 --------------------------------------------------------------------------LFRTNQ 56 (116)
Q Consensus 51 --------------------------------------------------------------------------~~~p~~ 56 (116)
||+|.+
T Consensus 110 F~~~i~a~~~~p~~~~~d~~~~~df~~~~Pes~~~~~~l~s~~g~p~sy~~~~~~g~htf~~vn~~G~~~~vK~~~~P~~ 189 (451)
T cd08157 110 FPHFIHSQKRDPQTNLKDSTMFWDYLSQNPESIHQVMILFSDRGTPASYRSMNGYSGHTYKWVNPDGSFKYVQFHLKSDQ 189 (451)
T ss_pred HHHHHHhcccCCCCCCCChHHHHHHHhhChHHHHHHHHHhccCCCCCCcccCCccccceeEEECCCCCEEEEEEEEEECC
Confidence 999999
Q ss_pred cccCCCHHHHHHhhCCCCCcchhhHHHHHHCCCCCeEEEEEEeeCcchhccCCCCCCCCC
Q psy8744 57 KIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWNPFDLT 116 (116)
Q Consensus 57 G~~~lt~~ea~~~~~~~pdf~~~dL~~~I~~g~~p~w~l~vQv~~~~d~~~~~~~~~D~T 116 (116)
|+++|+++||+++++.+|||+++||+++|++|++|+|+|+||||+++|+++++|||+|+|
T Consensus 190 G~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQl~~~~d~~~~~f~i~D~T 249 (451)
T cd08157 190 GPKFLTGEEAARLAGSNPDYATKDLFEAIERGDYPSWTVYVQVMTPEQAEKLRFNIFDLT 249 (451)
T ss_pred CcccCCHHHHHhhcCCCCChhHhhHHHHHhcCCCceEEEEEEEeCHHHHhhCCCCCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 10
>PF00199 Catalase: Catalase; InterPro: IPR011614 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. Based on a phylogenetic analysis, catalases can be classified into clade 1, 2 and 3. Clade 1 contains small subunit catalases from plants and a subset of bacteria; clade 2 contains large subunit catalases from fungi and a second subset of bacteria; and clade 3 contains small subunit catalases from bacteria, fungi, protists, animals, and plants [, ]. This entry represent the core-forming domain of mono-functional, haem-containing catalases. It does not cover the region that carries an immune-responsive amphipathic octa-peptide that is found in the C-terminal of some catalases (IPR010582 from INTERPRO).; GO: 0004096 catalase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 7CAT_A 3NWL_D 4BLC_D 1TH3_D 1TH4_A 1TGU_B 1TH2_D 3RGS_D 3RE8_D 3RGP_C ....
Probab=99.97 E-value=4.7e-31 Score=215.94 Aligned_cols=116 Identities=41% Similarity=0.586 Sum_probs=102.5
Q ss_pred CeEEEEECCCchhhhhcccCCCCCceeeeEeceecCCCCCCCCCCCCCCC------------------------------
Q psy8744 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIR------------------------------ 50 (116)
Q Consensus 1 A~G~F~~t~d~s~~t~A~~f~~~gk~tPv~~RFS~~~g~~g~pD~~rd~R------------------------------ 50 (116)
|+|+|++++++++++++.+|+++||++||++|||+++|+++++|+.+|+|
T Consensus 54 a~G~F~v~~~~~~~~~a~~F~~~Gk~~pv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~eG~~D~v~~n~PvF~~~d~~~ 133 (384)
T PF00199_consen 54 AKGEFEVTPDLPELTRAGLFAKPGKTYPVIVRFSNAGGNPGSPDTARDPRGMAIKFFTDEGNWDFVMNNTPVFFARDPEK 133 (384)
T ss_dssp EEEEEEESSCGTTT---GGGSSTT-EEEEEEEEEESSS-TTS-TTSSSBEEEEEEEEETTEEEEEEEESSSS-S-SSGGG
T ss_pred EEEEEEECCcchHhhhcccccCCCcccceeeeecccCCCCCCCccCCCcceeEeEEecccccceeeeccccceeccCchh
Confidence 58999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------eeEeCc
Q psy8744 51 --------------------------------------------------------------------------LFRTNQ 56 (116)
Q Consensus 51 --------------------------------------------------------------------------~~~p~~ 56 (116)
||+|.+
T Consensus 134 F~~~~~a~~~~p~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~p~s~~~~~y~s~~tf~~~~~~G~~~~vK~~~~P~~ 213 (384)
T PF00199_consen 134 FLDFLKALKPDPATGLPDPNRLWAFLAAHPEALHQVAWLFSDRPTPASYAHMNYYSIHTFKFTNADGERRYVKYRLVPEQ 213 (384)
T ss_dssp HHHHHHHHSBBTTTTSBCHHHHHHHHHHSGGGHHHHHHHHSGGGSBSSGGGS-EEEESEEEEEETTSEEEEEEEEEEETT
T ss_pred ccchhhhhcccccccccChHHHHHHhhcChhhhhhhhhhhccCCCCCCccCCCcEeeeeEEeccccCcccEEEEEecCCC
Confidence 899999
Q ss_pred cccCCCHHHHHHhhCCCCCcchhhHHHHHHCCCCCeEEEEEEeeCcchhccCCCCCCCCC
Q psy8744 57 KIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWNPFDLT 116 (116)
Q Consensus 57 G~~~lt~~ea~~~~~~~pdf~~~dL~~~I~~g~~p~w~l~vQv~~~~d~~~~~~~~~D~T 116 (116)
|++.|+.+|+.++.+++||||.+||+++|+++.+++|+|+|||++++|...++||++|+|
T Consensus 214 g~~~l~~~ea~~~~~~~pdyL~~dL~~rL~~~~~~~~~l~vQl~~~~d~~~~~~~i~D~T 273 (384)
T PF00199_consen 214 GVKPLTDEEAAKIAGRDPDYLRDDLYERLAAGGPVRWDLQVQLATPEDPMPFRFNIEDAT 273 (384)
T ss_dssp BTTBE-HHHHHHHHHH-TTHHHHHHHHHHHTTS-EEEEEEEEEEEGGGCTTSSSHTT-TT
T ss_pred CcccCCHHHhhhcccCCcchhhHHHHHHHhcCCceeEEEEEEecCcccccccCCCcccCC
Confidence 999999999999888899999999999999666699999999999999999999999987
No 11
>cd08151 AOS Allene oxide synthase. Allene oxide synthase converts a fatty acid hydroperoxide to an allene oxide, which is an unstable epoxide. In corals, the enzyme is part of a eiconaosid synthesis pathway that is initiated by a lipoxygenase, which generates the fatty acid hydroperoxides in the first step. The structure of allene oxide synthase closely resembles that of catalase, but allene oxide synthase does not have catalase activity.
Probab=99.91 E-value=6.1e-24 Score=170.99 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=98.1
Q ss_pred CeEEEEECCCchhhhhcccCCCCCceeeeEeceecCCCCCCCCCCCCCCC------------------------------
Q psy8744 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIR------------------------------ 50 (116)
Q Consensus 1 A~G~F~~t~d~s~~t~A~~f~~~gk~tPv~~RFS~~~g~~g~pD~~rd~R------------------------------ 50 (116)
|+|+|+++++++ ++++.+|. .|+++||++|||+++|+ ++|+.+|+|
T Consensus 37 a~G~F~v~~d~~-~~~a~~F~-~g~~~pv~~RfS~~~g~--~~D~~~d~RG~AiKf~~~~~~~~~~~D~v~~n~pvF~~~ 112 (328)
T cd08151 37 AKGVLTVLAESD-FPEHAFFT-AGKRFPVILRHANIVGG--DDDASLDGRGAALRFLNAGDDDAGPLDLVMNTGESFGFW 112 (328)
T ss_pred EEEEEEEcCCch-hhhhhhcC-CCCeEEEEEEecCCCCC--ccccccCCCeEEEEEeccCCCCCCceeEEEecCCccccC
Confidence 589999999999 99999996 58899999999999998 999999999
Q ss_pred -------------------------------------------------------------------eeEe-CccccCCC
Q psy8744 51 -------------------------------------------------------------------LFRT-NQKIKNLP 62 (116)
Q Consensus 51 -------------------------------------------------------------------~~~p-~~G~~~lt 62 (116)
||+| .+|++.|+
T Consensus 113 d~~~F~~~~~a~~p~~~~~~~~~~p~~~~~~~~~~~~~p~s~~~~~y~s~~~f~f~~~~G~~~~vK~~~~P~~~~~~~l~ 192 (328)
T cd08151 113 TAASFADFAGAGLPFREKAAKLRGPLARYAVWASLRRAPDSYTDLHYYSQICYEFVALDGKSRYARFRLLPPDADTEWDL 192 (328)
T ss_pred CHHHHHHHHhcCCCcchhhhhhcCHHHHhhhhhcccCCCCCcccccceeEeeEEEECCCCCEEEEEEEEEECCCCccccc
Confidence 8999 57889999
Q ss_pred HHHHHH------------h--hCCCCCcchhhHHHHHHCCCCCeEEEEEEeeCcchhccCCCCCCCCC
Q psy8744 63 VKRAED------------L--AGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWNPFDLT 116 (116)
Q Consensus 63 ~~ea~~------------~--~~~~pdf~~~dL~~~I~~g~~p~w~l~vQv~~~~d~~~~~~~~~D~T 116 (116)
.+|+.+ + ...+||||++||+++|++|+ ++|+|+||+++++|.+ +++++|+|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~L~~dl~~rl~~g~-~~~~l~iQl~~~~d~~--~~~i~D~T 257 (328)
T cd08151 193 GEDVLETIFQRPRLYLPRLPGDTRPKDYLRNEFRQRLQSPG-VRYRLQIQLREVSDDA--TAVALDCC 257 (328)
T ss_pred hhhhhhcccccccccchhhcccCCCccHHHHHHHHHHHhCC-ceEEEEEEEechhhcC--CCCCCCCC
Confidence 988753 1 23589999999999999996 9999999999999977 78999987
No 12
>cd08153 srpA_like Catalase-like heme-binding proteins similar to the uncharacterized srpA. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to the Synechococcus elongatus PCC 7942 periplasmic protein srpA, of mostly bacterial origin. The plasmid-encoded srpA is regulated by sulfate, but does not seem to function in its uptake or metabolism.
Probab=99.89 E-value=4.5e-23 Score=163.42 Aligned_cols=99 Identities=24% Similarity=0.380 Sum_probs=94.1
Q ss_pred CeEEEEECCCchhhhhcccCCCCCceeeeEeceecCCCCCCCCCCCCCCC------------------------------
Q psy8744 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIR------------------------------ 50 (116)
Q Consensus 1 A~G~F~~t~d~s~~t~A~~f~~~gk~tPv~~RFS~~~g~~g~pD~~rd~R------------------------------ 50 (116)
|+|+|++++++++++++.+|. |+++||++|||+++|+|+++|..+|+|
T Consensus 24 ~~G~f~v~~~~~~~~~~~~f~--~~~~pv~vRfS~~~g~p~~~D~~~d~rG~AiK~~l~d~~~~D~v~~n~pvF~~~~~~ 101 (295)
T cd08153 24 VSGTFTPSGAAASLSRAPLFS--GGSVPVTGRFSLGGGNPKAPDDAANPRGMALKFRLPDGEQWRMVMNSFPVFPVRTPE 101 (295)
T ss_pred EEEEEEECCCcchhhhccccC--CCceEEEEEeccCCCCCCCCCCCCCCCeEEEEEEcCCCCeEeEeEecCcccccCCHH
Confidence 589999999999999999999 899999999999999999999999999
Q ss_pred -------------------------------------------------------------------------eeEeCcc
Q psy8744 51 -------------------------------------------------------------------------LFRTNQK 57 (116)
Q Consensus 51 -------------------------------------------------------------------------~~~p~~G 57 (116)
+|+|.+|
T Consensus 102 ~f~~~~~a~~~~~~~~~~~~~~~~f~~~~P~~~~~~~~~~~~~~p~s~~~~~y~s~~~f~f~~~~G~~~~vk~~~~P~~g 181 (295)
T cd08153 102 EFLALLKAIAPDATGKPDPAKLKAFLAAHPEAAAFLAWIKTAPPPASFANTTYYGVNAFYFTNANGKRQPVRWRFVPEDG 181 (295)
T ss_pred HHHHHHHhhCcCcCCCCCHHHHHHHHhhCHHHHHHHHHHcCCCCCCCcccCCccceeeEEEECCCCCEEEEEEEEEECCC
Confidence 8999999
Q ss_pred ccCCCHHHHHHhhCCCCCcchhhHHHHHHCCCCCeEEEEEEeeCcchh
Q psy8744 58 IKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQA 105 (116)
Q Consensus 58 ~~~lt~~ea~~~~~~~pdf~~~dL~~~I~~g~~p~w~l~vQv~~~~d~ 105 (116)
+++|+++|+.. .++|||.+||+++|++|+ ++|+|+||+++++|.
T Consensus 182 ~~~l~~~~~~~---~~~d~l~~~l~~~l~~g~-~~f~l~vQl~~~~d~ 225 (295)
T cd08153 182 VKYLSDEEAAK---LGPDFLFDELAQRLAQGP-VRWDLVLQLAEPGDP 225 (295)
T ss_pred CCCCCHHHhcc---CCcchhHHHHHHHHHhCC-ceEEEEEEEcCCCCc
Confidence 99999988865 589999999999999998 899999999999883
No 13
>cd08150 catalase_like Catalase-like heme-binding proteins and protein domains. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity.
Probab=99.89 E-value=6.3e-23 Score=161.69 Aligned_cols=104 Identities=31% Similarity=0.366 Sum_probs=95.8
Q ss_pred CeEEEEECCCchhhhhcccCCCCCceeeeEeceecCCCCCCCCCCCCCCC------------------------------
Q psy8744 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIR------------------------------ 50 (116)
Q Consensus 1 A~G~F~~t~d~s~~t~A~~f~~~gk~tPv~~RFS~~~g~~g~pD~~rd~R------------------------------ 50 (116)
|+|+|+++++++.++++.+|. +|+++||++|||+++| .+|+.+|+|
T Consensus 12 a~G~F~v~~~~~~~~~~~~f~-~~~~~pv~~RfS~~~g---~~D~~~~~RG~AiKf~~~~~~~~~D~v~~n~pvF~~~~~ 87 (283)
T cd08150 12 AFGTFEVLADLKERLRVGLFA-EGKVYPAYIRFSNGAG---IDDTKPDIRGFAIKFTGVADAGTLDFVLNNTPVFFIRNT 87 (283)
T ss_pred EEEEEEEcCCcchhhhccccc-CCCeeEEEEEeCCCCC---CcccCCCCceEEEEEEecCCCceEeEEEeCCCcCccCCH
Confidence 589999999999999999998 6889999999999998 899999999
Q ss_pred -------------------------------------------------------------------------eeEeCcc
Q psy8744 51 -------------------------------------------------------------------------LFRTNQK 57 (116)
Q Consensus 51 -------------------------------------------------------------------------~~~p~~G 57 (116)
+|+|.+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~s~~~~~y~s~~~f~f~~~~gk~~~vr~~~~P~~g 167 (283)
T cd08150 88 SDYEDFVAEFARSARGEPPLDFIAWYVEKRPEDLPNLLGARSQVPDSYAAARYFSQVTFAFINGAGKYRVVRSKDNPVDG 167 (283)
T ss_pred HHHHHHHHhccCCccCCCChHHHHHHHHhChhHHHHHHHHhCCCCCCccccceEeeeeEEEeccCCEEEEEEEEecccCC
Confidence 7889999
Q ss_pred ccCCCHHHHHHhhCCCCCcchhhHHHHHHCCCCCeEEEEEEeeCcchhccCCCCCCCCC
Q psy8744 58 IKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWNPFDLT 116 (116)
Q Consensus 58 ~~~lt~~ea~~~~~~~pdf~~~dL~~~I~~g~~p~w~l~vQv~~~~d~~~~~~~~~D~T 116 (116)
++.|+++++. +.++|||.+||+++|++|+ ++|+|+||+++++|. ++++|.|
T Consensus 168 ~~~l~~~~~~---~~~~d~L~~~l~~rl~~~~-~~~~l~vQl~~~~d~----~~i~D~t 218 (283)
T cd08150 168 IPSLEDHELE---ARPPDYLREELTERLQRGP-VVYDFRIQLNDDTDA----TTIDNPT 218 (283)
T ss_pred Ccccchhhhc---CCCcCHHHHHHHHHHHhCC-ceEEEEEEEcccccc----CCCCCCC
Confidence 9999987764 4699999999999999997 999999999999987 6777776
No 14
>cd08152 y4iL_like Catalase-like heme-binding proteins similar to the uncharacterized y4iL. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to Rhizobium sp. NGR234 y4iL, of mostly bacterial origin.
Probab=99.82 E-value=7.4e-20 Score=145.79 Aligned_cols=100 Identities=21% Similarity=0.209 Sum_probs=90.9
Q ss_pred CeEEEEECCCchhhhhcccCCCCCceeeeEeceecCCCCCCCCCCCCCCC------------------------------
Q psy8744 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIR------------------------------ 50 (116)
Q Consensus 1 A~G~F~~t~d~s~~t~A~~f~~~gk~tPv~~RFS~~~g~~g~pD~~rd~R------------------------------ 50 (116)
++|+|++++++++++++.+|.. |+++||++|||+++|+ +.+|..+|+|
T Consensus 15 v~G~F~v~~~~~~~~~~~~F~~-~~~~pv~vRfS~~~~~-~~~D~~~~~RG~AiK~~~~~G~~l~~~~~~~~~D~v~~n~ 92 (305)
T cd08152 15 LKAEFTVLDDLPPELAQGLFAE-PGTYPAVIRFSNAPGD-ILDDSVPDPRGMAIKVLGVPGEKLLPEEDATTQDFVLVNH 92 (305)
T ss_pred ceEEEEECCCchHHHhhhhcCC-CCeEEEEEEecCCCCC-CCCcccCCCCeEEEEEEcCcccccccccCCcccceeeecC
Confidence 4799999999999999999986 8899999999999999 8999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy8744 51 -------------------------------------------------------------------------------- 50 (116)
Q Consensus 51 -------------------------------------------------------------------------------- 50 (116)
T Consensus 93 pvF~~~d~~~f~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~y~s~~~fr~g~~~ 172 (305)
T cd08152 93 PVFFARDAKDYLALLKLLARTTSLPDGAKAALSAPLRGALRVLEAAGGESPTLKLGGHPPAHPLGETYWSQAPYRFGDYV 172 (305)
T ss_pred ceeecCCHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCccccceecccceeEccee
Confidence
Q ss_pred ---eeEeCccccC-CCHHHHHHhhCCCCCcchhhHHHHHHCCCCCeEEEEEEeeCcchh
Q psy8744 51 ---LFRTNQKIKN-LPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQA 105 (116)
Q Consensus 51 ---~~~p~~G~~~-lt~~ea~~~~~~~pdf~~~dL~~~I~~g~~p~w~l~vQv~~~~d~ 105 (116)
+|+|.+|... |+.+++. .+.++|||.+||.++|++|+ ++|+|+||+++++|.
T Consensus 173 vk~~~~P~~~~~~~l~~~~~~--~~~~~d~L~~~L~~~l~~g~-~~f~l~vQl~~~~d~ 228 (305)
T cd08152 173 AKYSVVPASPALPALTGKELD--LTDDPDALREALADFLAEND-AEFEFRIQLCTDLEK 228 (305)
T ss_pred EEEEEEECCCccccCchhhhh--cCCCccHHHHHHHHHHHhCC-ceEEEEEEecCchhh
Confidence 8999998887 6776652 35799999999999999997 999999999998874
No 15
>KOG4108|consensus
Probab=59.37 E-value=13 Score=28.09 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=27.3
Q ss_pred cCCCHHHHHHhhCCCCCcchhhHHHHHHCCCCCeEEEEEEeeCcc
Q psy8744 59 KNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFE 103 (116)
Q Consensus 59 ~~lt~~ea~~~~~~~pdf~~~dL~~~I~~g~~p~w~l~vQv~~~~ 103 (116)
+..+.+||.+|+ --+.+++-++|+.=.+|++++.||||=-+
T Consensus 91 ~~Y~~~~a~~lt----~elae~I~~rvK~l~~~RYK~Vv~V~ige 131 (174)
T KOG4108|consen 91 AEYDPDEALQLT----KELAEEIKDRVKELGYPRYKYVVQVMIGE 131 (174)
T ss_pred hccCHHHHHHHH----HHHHHHHHHHHHhcCCCceEEEEEEEEhh
Confidence 345666666552 23455666666666689999999998543
No 16
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=54.23 E-value=13 Score=26.85 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=24.6
Q ss_pred eEEEEECCCch-hhhhcccCCCCC---ceeeeEeceecCCC
Q psy8744 2 FGYFEVTHDIT-QYTKAAVFSKIG---KRTKIGVRFSTVGG 38 (116)
Q Consensus 2 ~G~F~~t~d~s-~~t~A~~f~~~g---k~tPv~~RFS~~~g 38 (116)
||.||++.+.. ++-. .-|+..| ++-|..|||++..-
T Consensus 52 ~GifeA~S~G~~ni~p-~Af~~~~~~~~~fPAQVrf~i~~~ 91 (130)
T PF10539_consen 52 YGIFEATSDGGMNIEP-YAFSGSGSGESPFPAQVRFRIRWD 91 (130)
T ss_pred EEEEEecCCCccCcCh-hhhCCCCCCCcccceEEEEEEeee
Confidence 79999998843 3333 3455323 58899999988654
No 17
>smart00767 DCD DCD is a plant specific domain in proteins involved in development and programmed cell death. The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.
Probab=41.31 E-value=24 Score=25.56 Aligned_cols=37 Identities=27% Similarity=0.168 Sum_probs=24.8
Q ss_pred eEEEEECCCc-hhhhhcccCCCCCceeeeEeceecCCC
Q psy8744 2 FGYFEVTHDI-TQYTKAAVFSKIGKRTKIGVRFSTVGG 38 (116)
Q Consensus 2 ~G~F~~t~d~-s~~t~A~~f~~~gk~tPv~~RFS~~~g 38 (116)
||.||++.+. .++....+=+..++.-|+.|||.+..-
T Consensus 54 ~GifeA~S~G~~ni~p~Af~~~~~s~fPaQVrf~i~~~ 91 (132)
T smart00767 54 HGIFEATSFGGLNIDPNAFEGKKESRFPAQVRFRIRKD 91 (132)
T ss_pred eeEEEeccCCcCCcChhHhcCCCCCccCcEEEEEEeee
Confidence 7999998873 444444433322567899999986654
No 18
>KOG0091|consensus
Probab=35.72 E-value=25 Score=26.99 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=25.3
Q ss_pred CccccCCCHHHHHHhhCCC------------------CCcchhhHHHHHHCCCC
Q psy8744 55 NQKIKNLPVKRAEDLAGSD------------------PDYSIRDLYNSIAAGKY 90 (116)
Q Consensus 55 ~~G~~~lt~~ea~~~~~~~------------------pdf~~~dL~~~I~~g~~ 90 (116)
.++....|.|||++++... .+-+++++|++|.+|.+
T Consensus 128 L~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qGei 181 (213)
T KOG0091|consen 128 LQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGEI 181 (213)
T ss_pred hhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhcCce
Confidence 3456667777777765321 25688999999999973
No 19
>PRK02749 photosystem I reaction center subunit IV; Provisional
Probab=28.26 E-value=38 Score=21.98 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=10.9
Q ss_pred CceeeeEeceecC
Q psy8744 24 GKRTKIGVRFSTV 36 (116)
Q Consensus 24 gk~tPv~~RFS~~ 36 (116)
|-+.||+|||--|
T Consensus 32 gi~YPV~VRF~kv 44 (71)
T PRK02749 32 GIKYPVIVRFDKV 44 (71)
T ss_pred CCeeeEEEEeeee
Confidence 6689999999755
No 20
>CHL00125 psaE photosystem I subunit IV; Reviewed
Probab=28.02 E-value=34 Score=21.78 Aligned_cols=14 Identities=43% Similarity=0.586 Sum_probs=11.6
Q ss_pred CceeeeEeceecCC
Q psy8744 24 GKRTKIGVRFSTVG 37 (116)
Q Consensus 24 gk~tPv~~RFS~~~ 37 (116)
|-+.||++||--|-
T Consensus 31 gi~YPV~VRF~kvN 44 (64)
T CHL00125 31 GIRYPVLVRFEKVN 44 (64)
T ss_pred CCCccEEEEEeeee
Confidence 67899999998664
No 21
>PF12411 Choline_sulf_C: Choline sulfatase enzyme C terminal
Probab=27.63 E-value=36 Score=20.93 Aligned_cols=16 Identities=19% Similarity=0.733 Sum_probs=13.7
Q ss_pred hHHHHHHCCCCCeEEE
Q psy8744 80 DLYNSIAAGKYPSYTF 95 (116)
Q Consensus 80 dL~~~I~~g~~p~w~l 95 (116)
=+|+++.+|.+..|+.
T Consensus 13 ~V~~AL~~G~~~~WDy 28 (54)
T PF12411_consen 13 FVYSALKQGRFTSWDY 28 (54)
T ss_pred HHHHHHHcCCCCCCCC
Confidence 4689999999999975
No 22
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=25.02 E-value=40 Score=24.71 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=11.5
Q ss_pred CCceeeeEeceec
Q psy8744 23 IGKRTKIGVRFST 35 (116)
Q Consensus 23 ~gk~tPv~~RFS~ 35 (116)
-|+..||.+|||-
T Consensus 56 FgGffPVq~Rfsp 68 (144)
T PRK13701 56 FGGFFPVQVRFTP 68 (144)
T ss_pred ccCeeeEEEEecC
Confidence 3789999999997
No 23
>PF12559 Inhibitor_I10: Serine endopeptidase inhibitors; InterPro: IPR022217 This family includes both microviridins and marinostatins. It seems likely that in both cases it is the C terminus which becomes the active inhibitor after post-translational modifications of the full length, pre-peptide. it is the ester linkages within the key, 12-residue. region that circularise the molecule giving it its inhibitory conformation. ; PDB: 1IXU_A.
Probab=24.68 E-value=25 Score=21.86 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=0.0
Q ss_pred CceeeeEeceecCC
Q psy8744 24 GKRTKIGVRFSTVG 37 (116)
Q Consensus 24 gk~tPv~~RFS~~~ 37 (116)
++.+|.|+||--+-
T Consensus 10 ~ka~PFFArFLe~Q 23 (56)
T PF12559_consen 10 GKAVPFFARFLEEQ 23 (56)
T ss_dssp --------------
T ss_pred cccccHHHHHHHhh
Confidence 88999999997655
No 24
>PF02427 PSI_PsaE: Photosystem I reaction centre subunit IV / PsaE; InterPro: IPR003375 PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains []. This subunit may form complexes with ferredoxin and ferredoxin-oxidoreductase in the photosystem I reaction centre.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009538 photosystem I reaction center; PDB: 1PSF_A 1PSE_A 2WSF_E 2WSC_E 2O01_E 2WSE_E 1GXI_E 1JB0_E 3PCQ_E 1QP2_A ....
Probab=24.57 E-value=39 Score=21.32 Aligned_cols=14 Identities=43% Similarity=0.619 Sum_probs=10.0
Q ss_pred CceeeeEeceecCC
Q psy8744 24 GKRTKIGVRFSTVG 37 (116)
Q Consensus 24 gk~tPv~~RFS~~~ 37 (116)
|-+.||++||-.|-
T Consensus 30 ~i~YPV~VRF~kvN 43 (61)
T PF02427_consen 30 GIRYPVVVRFDKVN 43 (61)
T ss_dssp SSSSSEEEE-SSS-
T ss_pred CccccEEEEEEEec
Confidence 56889999998663
No 25
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=20.16 E-value=36 Score=20.38 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=20.2
Q ss_pred CccccCCCHHHHHHhhCCCCCcchhhH
Q psy8744 55 NQKIKNLPVKRAEDLAGSDPDYSIRDL 81 (116)
Q Consensus 55 ~~G~~~lt~~ea~~~~~~~pdf~~~dL 81 (116)
.+|++..+..|..++.|-+|.-.++||
T Consensus 23 ~~G~~~vSS~~La~~~gi~~~qVRKDl 49 (50)
T PF06971_consen 23 EEGVERVSSQELAEALGITPAQVRKDL 49 (50)
T ss_dssp HTT-SEE-HHHHHHHHTS-HHHHHHHH
T ss_pred HcCCeeECHHHHHHHHCCCHHHhcccC
Confidence 478999999998888898888877776
Done!