RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8744
(116 letters)
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen
peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB:
1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A*
1h6n_A* 3hb6_A*
Length = 483
Score = 113 bits (285), Expect = 5e-31
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
F + Q IKNL A +L G+D + RDL +SI +P +T +Q+M A +N
Sbjct: 214 FVSQQGIKNLSDAEAGELVGNDRESHQRDLLDSIDNQDFPKWTLKVQIMPEADAATVPYN 273
Query: 112 PFDLT 116
PFDLT
Sbjct: 274 PFDLT 278
Score = 106 bits (267), Expect = 2e-28
Identities = 33/52 (63%), Positives = 39/52 (75%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
A+G F VTHDIT+YTKA +FS IGK+T + RFSTV GE G+AD R IR F
Sbjct: 59 AYGTFTVTHDITKYTKAKIFSDIGKKTDMFARFSTVAGERGAADAERDIRGF 110
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A
{Saccharomyces cerevisiae} SCOP: e.5.1.1
Length = 488
Score = 113 bits (284), Expect = 5e-31
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
+T+Q IKNL ++ A +AGS+PDY +DL+ +I G YPS+T YIQ MT A+ ++
Sbjct: 219 IKTDQGIKNLTIEEATKIAGSNPDYCQQDLFEAIQNGNYPSWTVYIQTMTERDAKKLPFS 278
Query: 112 PFDLT 116
FDLT
Sbjct: 279 VFDLT 283
Score = 104 bits (263), Expect = 5e-28
Identities = 36/52 (69%), Positives = 39/52 (75%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
AFGYFEVT DIT +A+FSKIGKRTK RFSTVGG+ GSADT R R F
Sbjct: 62 AFGYFEVTDDITDICGSAMFSKIGKRTKCLTRFSTVGGDKGSADTVRDPRGF 113
>2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide
detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta}
Length = 509
Score = 113 bits (284), Expect = 6e-31
Identities = 32/65 (49%), Positives = 42/65 (64%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
F NQ + NL + A LAG DPD+S RDL+ +I G YPS+ YIQ MT EQ++ ++
Sbjct: 228 FIANQGVHNLLDEEAGRLAGEDPDHSTRDLWEAIEKGDYPSWECYIQTMTLEQSKKLPFS 287
Query: 112 PFDLT 116
FDLT
Sbjct: 288 VFDLT 292
Score = 105 bits (264), Expect = 5e-28
Identities = 31/52 (59%), Positives = 35/52 (67%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
A+G FEVT DIT A +GK+T+I RFSTVGGE GSADTAR R F
Sbjct: 73 AYGVFEVTDDITDVCSAKFLDTVGKKTRIFTRFSTVGGEKGSADTARDPRGF 124
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM
NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A*
1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A*
3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A*
8cat_A*
Length = 497
Score = 112 bits (282), Expect = 1e-30
Identities = 43/65 (66%), Positives = 53/65 (81%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
++T+Q IKNL V+ A L+ DPDY IRDL+N+IA GKYPS+TFYIQVMTF QAE + +N
Sbjct: 232 YKTDQGIKNLSVEDAARLSQEDPDYGIRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFN 291
Query: 112 PFDLT 116
PFDLT
Sbjct: 292 PFDLT 296
Score = 104 bits (263), Expect = 6e-28
Identities = 39/52 (75%), Positives = 42/52 (80%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
AFGYFEVTHDIT+Y+KA VF IGK+T I VRFSTV GESGSADT R R F
Sbjct: 77 AFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGF 128
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping
region, terminal helical region, tetramer, heme group,
oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis}
SCOP: e.5.1.1
Length = 484
Score = 112 bits (282), Expect = 1e-30
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
F+TNQ IKNL + AE++AG +PD+ I DL+N+I ++PS+T +Q++ + A K
Sbjct: 215 FKTNQGIKNLESQLAEEIAGKNPDFHIEDLHNAIENQEFPSWTLSVQIIPYADALTMKET 274
Query: 112 PFDLT 116
FD+T
Sbjct: 275 LFDVT 279
Score = 105 bits (264), Expect = 4e-28
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
A G F+V+ + QYTKA S++GK T + RFSTV GE GS+DT R R F
Sbjct: 60 AHGIFKVSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDTLRDPRGF 111
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex,
oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori}
SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Length = 505
Score = 112 bits (282), Expect = 1e-30
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
F T Q +K+L + A ++ DPD + RDL+++IA G YP + IQVM E A+ ++++
Sbjct: 217 FHTMQGVKHLTNEEAAEIRKHDPDSNQRDLFDAIARGDYPKWKLSIQVMPEEDAKKYRFH 276
Query: 112 PFDLT 116
PFD+T
Sbjct: 277 PFDVT 281
Score = 105 bits (264), Expect = 4e-28
Identities = 32/52 (61%), Positives = 38/52 (73%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
A+G F VT DIT+YTKA +FSK+GK+T+ RFSTV GE GSAD R R F
Sbjct: 62 AYGTFTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGF 113
>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide
oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus}
SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A*
Length = 503
Score = 111 bits (280), Expect = 2e-30
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
F + Q + NL A +AG + D+ +DL+ SIA G +P + YIQ + +E+ + +++N
Sbjct: 221 FISQQGVHNLSNDEATKIAGENADFHRQDLFESIAKGDHPKWDLYIQAIPYEEGKTYRFN 280
Query: 112 PFDLT 116
PFDLT
Sbjct: 281 PFDLT 285
Score = 98.1 bits (245), Expect = 2e-25
Identities = 30/52 (57%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
AFG FEVT D+++YTKA VF G +T+ +RFSTV GE GS DT R +R F
Sbjct: 67 AFGEFEVTEDVSKYTKALVFQP-GTKTETLLRFSTVAGELGSPDTWRDVRGF 117
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET:
HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Length = 484
Score = 108 bits (273), Expect = 2e-29
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
+++ Q IKNL K + D + DL +I G +P + Y+QV+ E+ + ++
Sbjct: 212 WKSLQGIKNLDPKEVAQVQSKDYSHLTNDLVGAIKKGDFPKWDLYVQVLKPEELAKFDFD 271
Query: 112 PFDLT 116
P D T
Sbjct: 272 PLDAT 276
Score = 96.8 bits (242), Expect = 4e-25
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
G F + DI+ +KA VF G++T + VRFS+V + S +T R F
Sbjct: 58 VKGEFTASADISDLSKATVFKS-GEKTPVFVRFSSVVHGNHSPETLRDPHGF 108
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
{Exiguobacterium oxidotolerans}
Length = 491
Score = 108 bits (271), Expect = 4e-29
Identities = 16/65 (24%), Positives = 34/65 (52%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
+ + + NL A ++ G D +++ D + +I G +P + ++QV+ EN+ ++
Sbjct: 217 WVPKEGVHNLSADEATEVQGKDFNHASNDTFQAIENGDFPEWDLFVQVLDPADVENFDFD 276
Query: 112 PFDLT 116
P D T
Sbjct: 277 PLDAT 281
Score = 102 bits (257), Expect = 4e-27
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
A G F+V + + +YTKAA + G + RFSTV + S +T R R F
Sbjct: 62 AHGVFKVKNSMKKYTKAAFLQEEGTEVPVFARFSTVIHGTHSPETLRDPRGF 113
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 100 bits (251), Expect = 3e-26
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
++ +L A+ L G DPD+ R+L+ +I AG +P Y Q++ E + ++
Sbjct: 293 WKPLAGKASLVWDEAQKLTGRDPDFHRRELWEAIEAGDFPEYELGFQLIPEEDEFKFDFD 352
Query: 112 PFDLT 116
D T
Sbjct: 353 LLDPT 357
Score = 97.1 bits (242), Expect = 5e-25
Identities = 26/52 (50%), Positives = 31/52 (59%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
A GYF+ ++ TKA S K T + VRFSTV G +GSADT R IR F
Sbjct: 134 AHGYFQPYKSLSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGF 185
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase,
peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Length = 688
Score = 99.0 bits (247), Expect = 1e-25
Identities = 18/65 (27%), Positives = 39/65 (60%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
++T Q L + A+ LAG + D+ +DL+++I +G PS+ +Q++ ++A+ + ++
Sbjct: 236 WKTKQGKAALVWEEAQVLAGKNADFHRQDLWDAIESGNAPSWELAVQLIDEDKAQAYGFD 295
Query: 112 PFDLT 116
D T
Sbjct: 296 LLDPT 300
Score = 96.3 bits (240), Expect = 1e-24
Identities = 23/52 (44%), Positives = 28/52 (53%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
A G F D + T A+ K+T + VRFSTV G GSADTAR + F
Sbjct: 77 AHGIFTSYGDWSNITAASFLGAKDKQTPVFVRFSTVAGSRGSADTARDVHGF 128
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET:
HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Length = 715
Score = 98.6 bits (246), Expect = 2e-25
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
+ + +L A LAG DPD+ +DL+ +I G YP + F IQ + E + ++
Sbjct: 236 WTPELGVHSLVWDEALKLAGQDPDFHRKDLWEAIENGAYPKWKFGIQAIAEEDEHKFDFD 295
Query: 112 PFDLT 116
D T
Sbjct: 296 ILDAT 300
Score = 97.1 bits (242), Expect = 6e-25
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
AFG F+V + T A V + + T + VRFSTV G GSADT R +R F
Sbjct: 77 AFGKFKVYESASDLTMAPVLTDTSRETPVFVRFSTVLGSRGSADTVRDVRGF 128
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium
janthinellum} PDB: 2xf2_A*
Length = 688
Score = 95.8 bits (238), Expect = 2e-24
Identities = 24/52 (46%), Positives = 28/52 (53%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
A G F D + T A+ S GK T + RFSTV G GSADTAR + F
Sbjct: 69 AHGTFTSYGDWSNLTAASFLSAEGKETPMFTRFSTVAGSRGSADTARDVHGF 120
Score = 71.5 bits (175), Expect = 4e-16
Identities = 16/65 (24%), Positives = 34/65 (52%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
++ Q + + A+ AG + D+ +DL+ SI AG++P + +Q+M + + ++
Sbjct: 228 WKGLQGKASFVWEEAQQTAGKNADFXRQDLFQSIQAGRFPEWELGVQIMQEQDQLKFGFD 287
Query: 112 PFDLT 116
D T
Sbjct: 288 LLDPT 292
>3e4w_A Putative uncharacterized protein; heme enzyme, catalase,
peroxidase, oxidoreductase; HET: HEM; 1.80A
{Mycobacterium avium subsp} PDB: 3e4y_A*
Length = 320
Score = 91.5 bits (228), Expect = 1e-23
Identities = 13/52 (25%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
G F T D + A G +RFS G D A +R
Sbjct: 41 YRGTFTATRDAVMLSAAPHLD--GSTVPALIRFSNGSGNPKQRDGAPGVRGM 90
Score = 74.6 bits (184), Expect = 2e-17
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
+ L A D G DPD+ +L + G + F +Q+ +
Sbjct: 191 LVPTAAEEYLS---ASDARGKDPDFLTDELAARLQDGPV-RFDFRVQIAGPTDS------ 240
Query: 112 PFDLT 116
D +
Sbjct: 241 TVDPS 245
>1u5u_A Allene oxide synthase-lipoxygenase protein; catalase, heme,
eicosanoid, fusion PR lyase; HET: HEM; 2.00A {Plexaura
homomalla} SCOP: e.5.1.2
Length = 374
Score = 68.3 bits (167), Expect = 5e-15
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Query: 24 GKRTKIGVRFSTVGGESGSADTARSIRLFRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYN 83
GK R + D + + T ++ + + + + DY ++
Sbjct: 205 GKVRYCRYRALPGDVDIKEEDESGRL----TEEEQRKIWIFSRHENEKRPDDYLRKEYVE 260
Query: 84 SIAAGKYPSYTFYIQVMTFEQAENWKWNPFDLT 116
+ G +Y IQ+ + F
Sbjct: 261 RLQKGPV-NYRLQIQIHEASPDD--TATIFHAG 290
Score = 61.0 bits (148), Expect = 2e-12
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
G + +D ++ + F+ G+ +R + + D R F
Sbjct: 73 GIGEITIVNDP-KFPEHEFFTA-GRTFPARLRHANL---KYPDDAGADARSF 119
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein,
BI-functional enzyme, dioxygenase, fatty ACI
biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura
homomalla}
Length = 1066
Score = 57.2 bits (137), Expect = 6e-11
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLF 52
G + +D ++ + F+ G+ +R + + D R F
Sbjct: 73 GIGEITIVNDP-KFPEHEFFTA-GRTFPARLRHANL---KYPDDAGADARSF 119
Score = 54.1 bits (129), Expect = 6e-10
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 31 VRFSTVGGESGSADTARSIRLFRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKY 90
R+ + G+ + S RL T ++ + + + + DY ++ + G
Sbjct: 210 CRYRALPGDVDIKEEDESGRL--TEEEQRKIWIFSRHENEKRPDDYLRKEYVERLQKGPV 267
Query: 91 PSYTFYIQVMTFEQAENWKWNPFDLT 116
+Y IQ+ F
Sbjct: 268 -NYRLQIQIHEASPD--DTATIFHAG 290
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 1.1
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 50 RLFRTNQKIKNLPVKRAEDL 69
RL+ NQ V R +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPY 137
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding
protein complex, transferase metal protein complex,
nucleus; HET: ANP; 2.65A {Homo sapiens}
Length = 305
Score = 25.3 bits (56), Expect = 6.3
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 69 LAGSDP--DYSIRDLYNSIAAGKY--PSY 93
G P +I L+ +I G Y P
Sbjct: 207 TTGLYPFEGDNIYKLFENIGKGSYAIPGD 235
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair,
HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2
PDB: 1h7u_A* 1ea6_A*
Length = 365
Score = 24.8 bits (55), Expect = 8.4
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 11/42 (26%)
Query: 58 IKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQV 99
V R + ++Y+ +YP I V
Sbjct: 297 CDPAKVCRL-----------VNEVYHMYNRHQYPFVVLNISV 327
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 9.2
Identities = 16/101 (15%), Positives = 25/101 (24%), Gaps = 50/101 (49%)
Query: 10 DITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLFRTNQKIKNLPVKRAEDL 69
TQ+T+ A+ + F + +P
Sbjct: 1727 SATQFTQPALT--------------LM-----------EKAAFEDLKSKGLIPADAT--F 1759
Query: 70 AG-SDPDYSIRDL--YNSIA--AGKYPSYTFYIQVMTFEQA 105
AG S L Y ++A A VM+ E
Sbjct: 1760 AGHS--------LGEYAALASLAD----------VMSIESL 1782
>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel
fold, PSI, protein structu initiative; 1.70A
{Saccharomyces cerevisiae} SCOP: d.248.1.1 PDB: 1tkl_A
1tlb_A 1tk1_A
Length = 328
Score = 24.5 bits (54), Expect = 10.0
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 28 KIGVRFSTVGGESGSADTARSIRLFRTNQKIKNLPVKRAEDLAGSD 73
K GV S V G+ S +++ N ++ P G
Sbjct: 66 KGGVNVSVVYGQL-SPAAVSAMKADHKNLRLPEDPKTGLPVTDGVK 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,802,532
Number of extensions: 94417
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 38
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)