RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8744
(116 letters)
>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
[TaxId: 562]}
Length = 571
Score = 86.9 bits (215), Expect = 7e-22
Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLFRTNQKIKN 60
A GYF+ ++ TKA S K T + VRFSTV G +GSADT R IR F K
Sbjct: 108 AHGYFQPYKSLSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRQIRGFA----TKF 163
Query: 61 LPVKRAEDLAG-SDPDYSIRD 80
+ DL G + P + I+D
Sbjct: 164 YTEEGIFDLVGNNTPIFFIQD 184
Score = 79.6 bits (196), Expect = 2e-19
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
++ +L A+ L G DPD+ R+L+ +I AG +P Y Q++ E + ++
Sbjct: 267 WKPLAGKASLVWDEAQKLTGRDPDFHRRELWEAIEAGDFPEYELGFQLIPEEDEFKFDFD 326
Query: 112 PFDLT 116
D T
Sbjct: 327 LLDPT 331
>d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 488
Score = 85.4 bits (211), Expect = 2e-21
Identities = 42/81 (51%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLFRTNQKIKN 60
AFGYFEVT DIT +A+FSKIGKRTK RFSTVGG+ GSADT R R F K
Sbjct: 62 AFGYFEVTDDITDICGSAMFSKIGKRTKCLTRFSTVGGDKGSADTVRDPRGFA----TKF 117
Query: 61 LPVKRAEDLAG-SDPDYSIRD 80
+ D + P + IRD
Sbjct: 118 YTEEGNLDWVYNNTPVFFIRD 138
Score = 79.6 bits (196), Expect = 2e-19
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
+T+Q IKNL ++ A +AGS+PDY +DL+ +I G YPS+T YIQ MT A+ ++
Sbjct: 219 IKTDQGIKNLTIEEATKIAGSNPDYCQQDLFEAIQNGNYPSWTVYIQTMTERDAKKLPFS 278
Query: 112 PFDLT 116
FDLT
Sbjct: 279 VFDLT 283
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 84.2 bits (208), Expect = 6e-21
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 5/81 (6%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLFRTNQKIKN 60
AFG F VTHDIT+YT+A +FS++GK+T++ RFSTV GE G+AD R IR F +K
Sbjct: 57 AFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRGFA----LKF 112
Query: 61 LPVKRAEDLAG-SDPDYSIRD 80
+ D+ G + P + +RD
Sbjct: 113 YTEEGNWDMVGNNTPVFYLRD 133
Score = 77.2 bits (190), Expect = 2e-18
Identities = 30/65 (46%), Positives = 38/65 (58%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
FR Q IKNL AE L G D + S RDL+ +I G YP + IQ+M ++A +N
Sbjct: 212 FRCQQGIKNLMDDEAEALVGKDRESSQRDLFEAIKRGDYPRWKLQIQIMPEKEASTVPYN 271
Query: 112 PFDLT 116
PFDLT
Sbjct: 272 PFDLT 276
>d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId:
1351]}
Length = 474
Score = 82.6 bits (204), Expect = 2e-20
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLFRTNQKIKN 60
A G F+V+ + QYTKA S++GK T + RFSTV GE GS+DT R R F +K
Sbjct: 57 AHGIFKVSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDTLRDPRGFA----LKF 112
Query: 61 LPVKRAEDLAG-SDPDYSIRD 80
+ DL G + P + IRD
Sbjct: 113 YTDEGNYDLVGNNTPIFFIRD 133
Score = 78.8 bits (194), Expect = 5e-19
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
F+TNQ IKNL + AE++AG +PD+ I DL+N+I ++PS+T +Q++ + A K
Sbjct: 212 FKTNQGIKNLESQLAEEIAGKNPDFHIEDLHNAIENQEFPSWTLSVQIIPYADALTMKET 271
Query: 112 PFDLT 116
FD+T
Sbjct: 272 LFDVT 276
>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]}
Length = 491
Score = 82.7 bits (204), Expect = 2e-20
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLFRT 54
A+G F VT DIT+YTKA +FSK+GK+T+ RFSTV GE GSAD R R F
Sbjct: 62 AYGTFTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAM 115
Score = 75.4 bits (185), Expect = 8e-18
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
F T Q +K+L + A ++ DPD + RDL+++IA G YP + IQVM E A+ ++++
Sbjct: 217 FHTMQGVKHLTNEEAAEIRKHDPDSNQRDLFDAIARGDYPKWKLSIQVMPEEDAKKYRFH 276
Query: 112 PFDLT 116
PFD+T
Sbjct: 277 PFDVT 281
>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 82.6 bits (204), Expect = 2e-20
Identities = 47/81 (58%), Positives = 53/81 (65%), Gaps = 5/81 (6%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLFRTNQKIKN 60
AFGYFEVTHDIT+Y+KA VF IGK+T I VRFSTV GESGSADT R R F +K
Sbjct: 77 AFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGFA----VKF 132
Query: 61 LPVKRAEDLAG-SDPDYSIRD 80
DL G + P + IRD
Sbjct: 133 YTEDGNWDLVGNNTPIFFIRD 153
Score = 81.9 bits (202), Expect = 4e-20
Identities = 43/65 (66%), Positives = 53/65 (81%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
++T+Q IKNL V+ A L+ DPDY IRDL+N+IA GKYPS+TFYIQVMTF QAE + +N
Sbjct: 232 YKTDQGIKNLSVEDAARLSQEDPDYGIRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFN 291
Query: 112 PFDLT 116
PFDLT
Sbjct: 292 PFDLT 296
>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId:
1270]}
Length = 498
Score = 78.8 bits (194), Expect = 4e-19
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLFRTNQKIKN 60
AFG FEVT D+++YTKA VF G +T+ +RFSTV GE GS DT R +R F ++
Sbjct: 62 AFGEFEVTEDVSKYTKALVFQP-GTKTETLLRFSTVAGELGSPDTWRDVRGFA----LRF 116
Query: 61 LPVKRAEDLAG-SDPDYSIRD 80
+ DL G + P + +RD
Sbjct: 117 YTEEGNYDLVGNNTPIFFLRD 137
Score = 72.7 bits (178), Expect = 7e-17
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
F + Q + NL A +AG + D+ +DL+ SIA G +P + YIQ + +E+ + +++N
Sbjct: 216 FISQQGVHNLSNDEATKIAGENADFHRQDLFESIAKGDHPKWDLYIQAIPYEEGKTYRFN 275
Query: 112 PFDLT 116
PFDLT
Sbjct: 276 PFDLT 280
>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
Length = 484
Score = 76.1 bits (187), Expect = 4e-18
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLFRT 54
G F + DI+ +KA VF G++T + VRFS+V + S +T R F T
Sbjct: 58 VKGEFTASADISDLSKATVFKS-GEKTPVFVRFSSVVHGNHSPETLRDPHGFAT 110
Score = 76.1 bits (187), Expect = 4e-18
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 52 FRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKYPSYTFYIQVMTFEQAENWKWN 111
+++ Q IKNL K + D + DL +I G +P + Y+QV+ E+ + ++
Sbjct: 212 WKSLQGIKNLDPKEVAQVQSKDYSHLTNDLVGAIKKGDFPKWDLYVQVLKPEELAKFDFD 271
Query: 112 PFDLT 116
P D T
Sbjct: 272 PLDAT 276
>d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein,
N-terminal domain {Black sea rod (Plexaura homomalla)
[TaxId: 47982]}
Length = 366
Score = 62.7 bits (152), Expect = 2e-13
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 8/81 (9%)
Query: 1 AFGYFEVTHDITQYTKAAVFSKIGKRTKIGVRFSTVGGESGSADTARSIRLFRTNQKIKN 60
G + +D + + F+ G+ +R + + D R F K +
Sbjct: 71 GIGEITIVNDPK-FPEHEFFTA-GRTFPARLRHANL---KYPDDAGADARSFSI--KFAD 123
Query: 61 LPVKRAEDLAG-SDPDYSIRD 80
D+ + +
Sbjct: 124 SDSDGPLDIVMNTGEANIFWN 144
Score = 45.7 bits (108), Expect = 2e-07
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 31 VRFSTVGGESGSADTARSIRLFRTNQKIKNLPVKRAEDLAGSDPDYSIRDLYNSIAAGKY 90
R+ + G+ + S RL Q+ + + DY ++ + G
Sbjct: 208 CRYRALPGDVDIKEEDESGRLTEEEQRKIWI--FSRHENEKRPDDYLRKEYVERLQKG-P 264
Query: 91 PSYTFYIQVMTFEQAENWKWNPFDLT 116
+Y IQ+ E + + F
Sbjct: 265 VNYRLQIQIH--EASPDDTATIFHAG 288
>d1tkla_ d.248.1.1 (A:) Coproporphyrinogen III oxidase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 24.3 bits (52), Expect = 5.1
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 28 KIGVRFSTVGGESGSADTARSIRLFRTNQKIKNLPVKRAEDLAGSD 73
K GV S V G+ S +++ N ++ P G
Sbjct: 63 KGGVNVSVVYGQL-SPAAVSAMKADHKNLRLPEDPKTGLPVTDGVK 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 437,359
Number of extensions: 17432
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 21
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)