BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8745
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LQ3|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 401
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 22/173 (12%)
Query: 26 LQSDWQYIETALSKTKSPVVFCHNDLLLGNIIY---DETEDKVTFIDYEYAGVNYQAFDI 82
L+ + + L T SPVVFCHND+ GNI+ E D + +D+EY+ NY+ FDI
Sbjct: 224 LKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYNYRGFDI 283
Query: 83 ANHFDE-----------FAGVSPIDHSRYPGPEFQLSWLRTYLEEY----TGSPPSPHQL 127
NHF E F P D YP E QL ++R YL E T S +L
Sbjct: 284 GNHFCEWVYDYTHEEWPFYKARPTD---YPTQEQQLHFIRHYLAEAKKGETLSQEEQRKL 340
Query: 128 AT-LHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYASSTYQGYVLKRDK 179
L +V +++ +H FW +W ++QA S IEF + YA S +Q Y ++ +
Sbjct: 341 EEDLLVEVSRYALASHFFWGLWSILQASMSTIEFGYLDYAQSRFQFYFQQKGQ 393
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 190 ILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNMKTP 249
IL L P+LY F G + QY+ + +REP + +A MA+ H +
Sbjct: 131 ILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKE 190
Query: 250 KLWSTG 255
W G
Sbjct: 191 PHWLFG 196
>pdb|3FEG|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 379
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 22/173 (12%)
Query: 26 LQSDWQYIETALSKTKSPVVFCHNDLLLGNIIY---DETEDKVTFIDYEYAGVNYQAFDI 82
L+ + + L T SPVVFCHND+ GNI+ E D + +D+EY+ NY+ FDI
Sbjct: 202 LKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYNYRGFDI 261
Query: 83 ANHFDE-----------FAGVSPIDHSRYPGPEFQLSWLRTYLEEY----TGSPPSPHQL 127
NHF E F P D YP E QL ++R YL E T S +L
Sbjct: 262 GNHFCEWVYDYTHEEWPFYKARPTD---YPTQEQQLHFIRHYLAEAKKGETLSQEEQRKL 318
Query: 128 AT-LHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYASSTYQGYVLKRDK 179
L +V +++ +H FW +W ++QA S IEF + YA S +Q Y ++ +
Sbjct: 319 EEDLLVEVSRYALASHFFWGLWSILQASMSTIEFGYLDYAQSRFQFYFQQKGQ 371
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 190 ILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNMKTP 249
IL L P+LY F G + QY+ + +REP + +A MA+ H +
Sbjct: 109 ILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKE 168
Query: 250 KLWSTG 255
W G
Sbjct: 169 PHWLFG 174
>pdb|2IG7|A Chain A, Crystal Structure Of Human Choline Kinase B
pdb|2IG7|B Chain B, Crystal Structure Of Human Choline Kinase B
Length = 401
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 22/173 (12%)
Query: 26 LQSDWQYIETALSKTKSPVVFCHNDLLLGNIIY---DETEDKVTFIDYEYAGVNYQAFDI 82
L+ + + L T SPVVFCHND+ GNI+ E D + +D+EY+ NY+ FDI
Sbjct: 224 LKDEXGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLXLVDFEYSSYNYRGFDI 283
Query: 83 ANHFDE-----------FAGVSPIDHSRYPGPEFQLSWLRTYLEEY----TGSPPSPHQL 127
NHF E F P D YP E QL ++R YL E T S +L
Sbjct: 284 GNHFCEWVYDYTHEEWPFYKARPTD---YPTQEQQLHFIRHYLAEAKKGETLSQEEQRKL 340
Query: 128 AT-LHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYASSTYQGYVLKRDK 179
L +V +++ +H FW +W ++QA S IEF + YA S +Q Y ++ +
Sbjct: 341 EEDLLVEVSRYALASHFFWGLWSILQASXSTIEFGYLDYAQSRFQFYFQQKGQ 393
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 26/66 (39%)
Query: 190 ILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNMKTP 249
IL L P+LY F G + QY+ + +REP + +A A+ H
Sbjct: 131 ILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKXAQFHGXEXPFTKE 190
Query: 250 KLWSTG 255
W G
Sbjct: 191 PHWLFG 196
>pdb|2I7Q|A Chain A, Crystal Structure Of Human Choline Kinase A
Length = 402
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 33/193 (17%)
Query: 13 SRFQALFPGGVSQLQSDWQYIETALSKTKSPVVFCHNDLLLGNIIYDETED-----KVTF 67
SR + L L + + + + L T SPVVFCHND GNI+ E + K+
Sbjct: 214 SRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLML 273
Query: 68 IDYEYAGVNYQAFDIANHFDEFAGVSPIDHS------------RYPGPEFQLSWLRTYLE 115
ID+EY+ NY+ FDI NHF E+ D+S +YP + QL ++ +YL
Sbjct: 274 IDFEYSSYNYRGFDIGNHFCEWM----YDYSYEKYPFFRANIRKYPTKKQQLHFISSYLP 329
Query: 116 EYTGSPPSPHQLAT---------LHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYA 166
+ L+T + +V +F+ +H W +W +VQA+ S IEF + YA
Sbjct: 330 AFQNDF---ENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYA 386
Query: 167 SSTYQGYVLKRDK 179
+ + Y ++ K
Sbjct: 387 QARFDAYFHQKRK 399
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 190 ILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNMKTP 249
IL L P+LY F G + Q++ + + + P I +A MA H MK P
Sbjct: 131 ILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISAEIAEKMATFH----GMKMP 186
>pdb|3F2R|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3F2R|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3G15|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
pdb|3G15|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
Length = 401
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 33/193 (17%)
Query: 13 SRFQALFPGGVSQLQSDWQYIETALSKTKSPVVFCHNDLLLGNIIYDETED-----KVTF 67
SR + L L + + + + L T SPVVFCHND GNI+ E + K+
Sbjct: 213 SRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLML 272
Query: 68 IDYEYAGVNYQAFDIANHFDEFAGVSPIDHS------------RYPGPEFQLSWLRTYLE 115
ID+EY+ NY+ FDI NHF E+ D+S +YP + QL ++ +YL
Sbjct: 273 IDFEYSSYNYRGFDIGNHFCEWM----YDYSYEKYPFFRANIRKYPTKKQQLHFISSYLP 328
Query: 116 EYTGSPPSPHQLAT---------LHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYA 166
+ L+T + +V +F+ +H W +W +VQA+ S IEF + YA
Sbjct: 329 AFQNDF---ENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYA 385
Query: 167 SSTYQGYVLKRDK 179
+ + Y ++ K
Sbjct: 386 QARFDAYFHQKRK 398
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 190 ILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNMKTP 249
IL L P+LY F G + Q++ + + + P I +A MA H MK P
Sbjct: 130 ILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISAEIAEKMATFH----GMKMP 185
>pdb|3ZM9|A Chain A, The Mechanism Of Allosteric Coupling In Choline Kinase A1
Revealed By A Rationally Designed Inhibitor
pdb|3ZM9|B Chain B, The Mechanism Of Allosteric Coupling In Choline Kinase A1
Revealed By A Rationally Designed Inhibitor
Length = 383
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 33/193 (17%)
Query: 13 SRFQALFPGGVSQLQSDWQYIETALSKTKSPVVFCHNDLLLGNIIYDETED-----KVTF 67
SR + L L + + + + L T SPVVFCHND GNI+ E + K+
Sbjct: 195 SRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLML 254
Query: 68 IDYEYAGVNYQAFDIANHFDEFAGVSPIDHS------------RYPGPEFQLSWLRTYLE 115
ID+EY+ NY+ FDI NHF E+ D+S +YP + QL ++ +YL
Sbjct: 255 IDFEYSSYNYRGFDIGNHFCEWM----YDYSYEKYPFFRANIRKYPTKKQQLHFISSYLP 310
Query: 116 EYTGSPPSPHQLAT---------LHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYA 166
+ L+T + +V +F+ +H W +W +VQA+ S IEF + YA
Sbjct: 311 AFQNDF---ENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYA 367
Query: 167 SSTYQGYVLKRDK 179
+ + Y ++ K
Sbjct: 368 QARFDAYFHQKRK 380
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 26/66 (39%)
Query: 190 ILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNMKTP 249
IL L P+LY F G + Q++ + + + P I +A MA H +
Sbjct: 112 ILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKE 171
Query: 250 KLWSTG 255
W G
Sbjct: 172 PKWLFG 177
>pdb|2CKO|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2
pdb|2CKO|B Chain B, Crystal Structure Of Human Choline Kinase Alpha 2
pdb|2CKP|A Chain A, Crystal Structure Of Human Choline Kinase Alpha-2 In
Complex With Adp
pdb|2CKP|B Chain B, Crystal Structure Of Human Choline Kinase Alpha-2 In
Complex With Adp
pdb|2CKQ|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2 In
Complex With Phosphocholine
pdb|2CKQ|B Chain B, Crystal Structure Of Human Choline Kinase Alpha 2 In
Complex With Phosphocholine
Length = 390
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 29/191 (15%)
Query: 13 SRFQALFPGGVSQLQSDWQYIETALSKTKSPVVFCHNDLLLGNIIYDETED-----KVTF 67
SR + L L + + + + L T SPVVFCHND GNI+ E + K+
Sbjct: 202 SRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLML 261
Query: 68 IDYEYAGVNYQAFDIANHFDEFAGVSPIDHS------------RYPGPEFQLSWLRTYL- 114
ID+EY+ NY+ FDI NHF E+ D+S +YP + QL ++ +YL
Sbjct: 262 IDFEYSSYNYRGFDIGNHFCEWM----YDYSYEKYPFFRANIRKYPTKKQQLHFISSYLP 317
Query: 115 ------EEYTGSPPSPHQLATLHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYASS 168
E + S + L +V +F+ +H W +W +VQA+ S IEF + YA +
Sbjct: 318 AFQNDFENLSTEEKSIIKEEML-LEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYAQA 376
Query: 169 TYQGYVLKRDK 179
+ Y ++ K
Sbjct: 377 RFDAYFHQKRK 387
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 190 ILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNMKTP 249
IL L P+LY F G + Q++ + + + P I +A MA H MK P
Sbjct: 119 ILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISAEIAEKMATFH----GMKMP 174
>pdb|1NW1|A Chain A, Crystal Structure Of Choline Kinase
pdb|1NW1|B Chain B, Crystal Structure Of Choline Kinase
Length = 429
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 37/185 (20%)
Query: 26 LQSDWQYIETALSKTKSPVVFCHNDLLLGNIIY--------------DETED-------- 63
L + +++ +S +KSPV FCHNDL GNI+ DET+
Sbjct: 231 LARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSAF 290
Query: 64 -----KVTFIDYEYAGVNYQAFDIANHFDEFAGVSPIDHS--------RYPGPEFQLSWL 110
++ ID+EYA NY+AFD ANHF E+ ID + +P + L +
Sbjct: 291 NPADPRLVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEFF 350
Query: 111 RTYLEEYTGSPPSP--HQLATLHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYASS 168
YL E + + + L + F PV+H FW +WGL+Q E S + F F Y
Sbjct: 351 LNYLREQGNTRENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRD 410
Query: 169 TYQGY 173
Y
Sbjct: 411 RLSLY 415
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 190 ILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKV 242
+L L P+LY F G + +Y+ ++ I H+ +A+ +A++H++
Sbjct: 131 LLSERHLGPKLYGIFSGGRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQL 183
>pdb|2QG7|A Chain A, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|B Chain B, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|D Chain D, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|E Chain E, Plasmodium Vivax Ethanolamine Kinase Pv091845
Length = 458
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 73/179 (40%), Gaps = 42/179 (23%)
Query: 33 IETALSKTKSPVVFCHNDLLLGNII----------------------------------- 57
+E+ + SP+V CH DLL NII
Sbjct: 279 VESLCKRENSPIVLCHCDLLSSNIINTVGGGEAGELGEAGETGEGGETGEGGETGEGGET 338
Query: 58 -YDETEDKVTFIDYEYAGVNYQAFDIANHFDEFAGVSPIDHSRYPGPEFQLSWLRTYLEE 116
D ++FID+EY+ +A+DIANHF+E+AG + D P E + ++ YL
Sbjct: 339 GEGGEGDSISFIDFEYSCPMERAYDIANHFNEYAGFN-CDWDLTPSKEEEYHFIMHYL-- 395
Query: 117 YTGSPPSPHQLATLHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYASSTYQGYVL 175
+ L ++Q F +H W +W L+Q HS I+FDF Y + L
Sbjct: 396 ---GTDDEELINQLIREIQPFYICSHINWGLWSLLQGMHSSIDFDFINYGMTRLTASCL 451
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 190 ILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSN 245
IL+ +A ++Y F NG + +++ G ++ + I+ P L+A+N+ LH + N
Sbjct: 160 ILYNKNIAKKIYVFFTNGRIEEFMDGYALSREDIKNPKFQKLIAKNLKLLHDIKLN 215
>pdb|3MES|A Chain A, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
pdb|3MES|B Chain B, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
Length = 424
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 15/162 (9%)
Query: 33 IETALSKTKSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEF--- 89
+E L +VF HNDL N++ +T++ + IDYEY+ +N+ DIAN+F E+
Sbjct: 251 LELKLYSPAFSLVFAHNDLQENNLL--QTQNNIRMIDYEYSAINFAGADIANYFCEYIYD 308
Query: 90 --AGVSP---IDHSRYPGPEFQLSWLRTYLEEYTGSPPSPHQ--LATLHWQVQQFSPVAH 142
+ P + YP E + ++ YL + P Q + + V+ F+ ++H
Sbjct: 309 YCSEKQPYFKFKYEDYPCEELRKLFISVYLSQTLQEQVMPSQQIVHIMTKAVEVFTLISH 368
Query: 143 CFWTIWGLVQA---EHSDIEFDFFQYASSTYQGYVLKRDKYL 181
W +W + + + + +EFDF +YA++ + Y+ K+ + +
Sbjct: 369 ITWGLWSIARTPGYQPNSVEFDFTEYANTRFTHYLQKKKELI 410
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 191 LHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHS 244
L +AP + A+F G + +++ G +T ++ HI VA+NM LH ++S
Sbjct: 130 LSNINIAPNIIADFPEGRIEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINS 183
>pdb|3C5I|A Chain A, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|B Chain B, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|C Chain C, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|D Chain D, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
Length = 369
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 69/145 (47%), Gaps = 15/145 (10%)
Query: 42 SPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEFA---GVS----- 93
+ +VFCHNDL NII T + ID+EY+G N+ A DIAN F E + VS
Sbjct: 210 NTIVFCHNDLQENNII--NTNKCLRLIDFEYSGFNFLATDIANFFIETSIDYSVSSYPFF 267
Query: 94 PIDHSRYPGPEFQLSWLRTYLEEYTGSP---PSPHQLATLHWQVQQFSPVAHCFWTIWGL 150
ID +Y E + ++ YL Y P+P + + V+ + AH W W +
Sbjct: 268 EIDKKKYISYENRKLFITAYLSNYLDKSLVVPTPKLIDEILEAVEVQALGAHLLWGFWSI 327
Query: 151 VQA--EHSDIEFDFFQYASSTYQGY 173
++ S EFDFF YA + Y
Sbjct: 328 IRGYQTKSYNEFDFFLYAEQRLKMY 352
>pdb|3FI8|A Chain A, Crystal Structure Of Choline Kinase From Plasmodium
Falciparum, Pf14_0020
Length = 362
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 23/158 (14%)
Query: 33 IETALSKTKSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEFAGV 92
I T + + +VFCHNDL NI+ T + ID+EY+G N+ + DIAN F E
Sbjct: 193 IYTQIENIANDIVFCHNDLQENNIM--NTNKCLRLIDFEYSGYNFLSADIANFFIE---- 246
Query: 93 SPIDHS------------RYPGPEFQLSWLRTYLEEYTGSPPSPHQLATLHWQVQQFSPV 140
+ ID+S Y E ++ ++ TYL +Y + + ++
Sbjct: 247 TTIDYSYNAYPFFIINKKNYISYESRILFVTTYLSKYLDDSTAASDQDIIDQFLEAIEVQ 306
Query: 141 A---HCFWTIWGLVQAEHSDI--EFDFFQYASSTYQGY 173
A H W W +++ + EFDFF YA + Y
Sbjct: 307 ALGLHLIWAFWSIIRGYQTKSYNEFDFFLYAKERLKMY 344
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 191 LHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNMKTPK 250
+ + +AP L FD G + +++ G ++ D ++ I +A + + H + P+
Sbjct: 86 MSKYRIAPLLLNTFDGGRIEEWLYGDPLSIDDLKNKSILVGIANVLGKFHTLSRKRHLPE 145
Query: 251 LWSTGKHMLSLIPR------TYSNPDK 271
W + ++ R Y N DK
Sbjct: 146 HWDKTPCVFKMMDRWRLAVSNYKNLDK 172
>pdb|3DXQ|A Chain A, Crystal Structure Of CholineETHANOLAMINE KINASE FAMILY
PROTEIN (Np_106042.1) From Mesorhizobium Loti At 2.55 A
Resolution
pdb|3DXQ|B Chain B, Crystal Structure Of CholineETHANOLAMINE KINASE FAMILY
PROTEIN (Np_106042.1) From Mesorhizobium Loti At 2.55 A
Resolution
Length = 301
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 36/181 (19%)
Query: 6 GAGLMFSSRFQAL----------------FPGGVSQLQSDWQYIETALSKTKSPVVFCHN 49
G+G +F RF+ P G + + + +AL+ P+ CH
Sbjct: 119 GSGAVFPFRFELFAXIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHPLPLAACHC 178
Query: 50 DLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEFAGVSPIDHSRYPGPEFQLSW 109
D L N + +T ++ +D+EY+G N +D+ + E +F +
Sbjct: 179 DPLCENFL--DTGERXWIVDWEYSGXNDPLWDLGDLSVE--------------GKFNANQ 222
Query: 110 LRTYLEEYTGSPPSPHQLATLHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYASST 169
Y G P + +V + WT+WGL+Q + + DF YA
Sbjct: 223 DEELXRAYFGGEARPAE----RGRVVIYKAXCDLLWTLWGLIQLANDNPVDDFRAYADGR 278
Query: 170 Y 170
+
Sbjct: 279 F 279
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 20/152 (13%)
Query: 47 CHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEFAGVSPIDHSRYPGPEFQ 106
C +DLL + YDE D+V Y G+ Y D++N P SRY P +
Sbjct: 10 CESDLLEYDYEYDENGDRVVLGKGTY-GIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHE 68
Query: 107 LSWLRTYLE-----EYTGSPPSPHQLATLHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFD 161
L +L+ +Y GS + QV S ++ + WG ++ I F
Sbjct: 69 EIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGS-LSALLRSKWGPLKDNEQTIGF- 126
Query: 162 FFQYASSTYQGYVLKRDKYLGTSPPSPQILHR 193
Y +L+ KYL + QI+HR
Sbjct: 127 --------YTKQILEGLKYLHDN----QIVHR 146
>pdb|1OF4|A Chain A, Structural And Thermodynamic Dissection Of Specific Mannan
Recognition By A Carbohydrate-Binding Module, Tmcbm27
pdb|1OH4|A Chain A, Structural And Thermodynamic Dissection Of Specific Mannan
Recognition By A Carbohydrate-Binding Module
Length = 179
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 72 YAGVNYQAFDIANHFDEFAGVSPI------DHSRYPGPEF 105
+ G Y+ F + FD AGV + DH RY GP F
Sbjct: 127 FGGKEYRRFHVRIEFDRTAGVKELHIGVVGDHLRYDGPIF 166
>pdb|1OF3|A Chain A, Structural And Thermodynamic Dissection Of Specific Mannan
Recognition By A Carbohydrate-Binding Module, Tmcbm27
pdb|1OF3|B Chain B, Structural And Thermodynamic Dissection Of Specific Mannan
Recognition By A Carbohydrate-Binding Module, Tmcbm27
Length = 179
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 72 YAGVNYQAFDIANHFDEFAGVSPI------DHSRYPGPEF 105
+ G Y+ F + FD AGV + DH RY GP F
Sbjct: 127 FGGKEYRRFHVRIEFDRTAGVKELHIGVVGDHLRYDGPIF 166
>pdb|3QQ3|B Chain B, Crystal Structure Of Swine Major Histocompatibility
Complex Class I Sla-1 0401 And Identification Of 2009
Pandemic Swine-Origin Influenza A H1n1 Virus Cytotoxic T
Lymphocyte Epitope Peptides
pdb|3QQ3|E Chain E, Crystal Structure Of Swine Major Histocompatibility
Complex Class I Sla-1 0401 And Identification Of 2009
Pandemic Swine-Origin Influenza A H1n1 Virus Cytotoxic T
Lymphocyte Epitope Peptides
pdb|3QQ4|B Chain B, Crystal Structure Of Swine Major Histocompatibility
Complex Class I Sla-1 0401 And Identification Of 2009
Pandemic Swine-Origin Influenza A H1n1 Virus Cytotoxic T
Lymphocyte Epitope Peptides
Length = 100
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 226 PHIHPLVARNMARLHKVHSNMKTPKLWSTGKHMLSLIPRTYSNPDKQERYCSRAQSLTSS 285
P I + +N +++ S++ K WS L+ T P+ ++Y R + +T
Sbjct: 35 PQIEIDLLKNGEKMNAEQSDLSFSKDWS-----FYLLVHTEFTPNAVDQYSCRVKHVTLD 89
Query: 286 EPKITDRSLDH 296
+PKI DH
Sbjct: 90 KPKIVKWDRDH 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,118,118
Number of Sequences: 62578
Number of extensions: 441825
Number of successful extensions: 854
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 803
Number of HSP's gapped (non-prelim): 29
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)