RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8745
(317 letters)
>gnl|CDD|240178 cd05157, ETNK_euk, Ethanolamine kinase (ETNK) in eukaryotes. ETNK
is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). ETNK catalyzes the
transfer of the gamma-phosphoryl group from CTP to
ethanolamine (Etn), the first step in the CDP-Etn
pathway for the formation of the major phospholipid,
phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK
shows specific activity for its substrate, and displays
negligible activity towards N-methylated derivatives of
Etn. The Drosophila ETNK is implicated in development
and neuronal function. Mammals contain two ETNK
proteins, ETNK1 and ETNK2. ETNK1 selectively increases
Etn uptake and phosphorylation, as well as PtdEtn
synthesis. ETNK2 is found primarily in the liver and
reproductive tissues. It plays a critical role in
regulating placental hemostasis to support late
embryonic development. It may also have a role in
testicular maturation.
Length = 235
Score = 131 bits (332), Expect = 6e-37
Identities = 45/87 (51%), Positives = 58/87 (66%)
Query: 23 VSQLQSDWQYIETALSKTKSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDI 82
QL+ + +++ LS SP+VFCHNDLL GNIIY+E ++ V FIDYEYAG NY+AFDI
Sbjct: 149 FEQLRDEISWLKELLSALNSPIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYNYRAFDI 208
Query: 83 ANHFDEFAGVSPIDHSRYPGPEFQLSW 109
ANHF+E+AG + P E Q
Sbjct: 209 ANHFNEWAGFDCDYYLYPPKEEQQAFI 235
Score = 91.6 bits (228), Expect = 7e-22
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 189 QILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVH----- 243
++L + GLAP+LYA F NGL+Y+++ G T+ P+ +R P I+ L+AR +A+LH +
Sbjct: 50 KLLSKHGLAPKLYATFQNGLIYEFIPGRTLEPEDLRNPKIYRLIARELAKLHSIKPPEAI 109
Query: 244 --SNMKTPKLWSTGKHMLSLIPRTYSNPDKQER--YCSRAQSLTSSEPKITDRSLDHKAK 299
P LW T + ++L+P + P+K ++ + L + + +
Sbjct: 110 SSPGTPKPILWPTIRKWINLVPTEFKKPEKFQKKTKAISFEQLRDEISWLKELLSALNSP 169
Query: 300 I 300
I
Sbjct: 170 I 170
>gnl|CDD|177880 PLN02236, PLN02236, choline kinase.
Length = 344
Score = 134 bits (338), Expect = 9e-37
Identities = 61/156 (39%), Positives = 93/156 (59%), Gaps = 7/156 (4%)
Query: 33 IETALSKTKSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEFAG- 91
+E LS + FCHNDL GNI+ DE +T IDYEYA N A+DIANHF E A
Sbjct: 189 LEKELSGDDQEIGFCHNDLQYGNIMIDEETRAITIIDYEYASYNPVAYDIANHFCEMAAD 248
Query: 92 ---VSP--IDHSRYPGPEFQLSWLRTYLEEYTGSPPSPHQLATLHWQVQQFSPVAHCFWT 146
+P +D+S+YPG E + ++RTYL +G PS ++ L V++++ +H FW
Sbjct: 249 YHSETPHILDYSKYPGEEERRRFIRTYL-SSSGEEPSDEEVEQLLDDVEKYTLASHLFWG 307
Query: 147 IWGLVQAEHSDIEFDFFQYASSTYQGYVLKRDKYLG 182
+WG++ + I+FD+ +YA ++ Y L++ + LG
Sbjct: 308 LWGIISGHVNKIDFDYMEYARQRFEQYWLRKPELLG 343
Score = 40.4 bits (95), Expect = 8e-04
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 193 RAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNM---KTP 249
R G PRL F NG V +++ T++ +R+P I L+A + H + +M K
Sbjct: 95 RHGQGPRLLGRFPNGRVEEFIHARTLSAADLRDPEISALIAAKLREFHSL--DMPGPKNV 152
Query: 250 KLWSTGKHMLSLIPRTYSNPDKQE 273
LW ++ L S + +E
Sbjct: 153 LLWDRLRNWLKEAKNLCSPEEAKE 176
>gnl|CDD|215231 PLN02421, PLN02421, phosphotransferase, alcohol group as
acceptor/kinase.
Length = 330
Score = 133 bits (337), Expect = 1e-36
Identities = 57/141 (40%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Query: 41 KSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEFAGVSPIDHSRY 100
K+PVVF HNDLL GN++ +E E K+ FID+EY +Y+ +DI NHF+E+AG D+S Y
Sbjct: 179 KAPVVFAHNDLLSGNLMLNEDEGKLYFIDFEYGSYSYRGYDIGNHFNEYAGFD-CDYSLY 237
Query: 101 PGPEFQLSWLRTYLEEYTGSPPSPHQLATLHWQVQQFSPVAHCFWTIWGLVQAEHSDIEF 160
P E Q + R YL S +L L + ++ +H +W IW +VQA+ S I+F
Sbjct: 238 PSKEEQYHFFRHYLRPDDPEEVSDAELEELFVETNFYALASHLYWAIWAIVQAKMSPIDF 297
Query: 161 DFFQYASSTYQGYVLKRDKYL 181
D+ Y Y+ Y +++K L
Sbjct: 298 DYLGYFFLRYKEYKRQKEKLL 318
Score = 54.7 bits (132), Expect = 2e-08
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 173 YVLKRDKYLGTSPPSPQILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLV 232
YV+ R++ L L AG +L F NG++ ++ T+TP +R+P + +
Sbjct: 56 YVIDRERELQAIK----YLSAAGFGAKLLGVFGNGMIQSFINARTLTPSDMRKPKVAAEI 111
Query: 233 ARNMARLHKVH-SNMKTPKLWS-TGKHMLSLIPRTYSNPDKQERY 275
A+ + RLH+V K P+LW+ K + +P+KQ++Y
Sbjct: 112 AKELRRLHQVEIPGSKEPQLWNDIFKFYEKASTVKFEDPEKQKKY 156
>gnl|CDD|240177 cd05156, ChoK_euk, Choline Kinase (ChoK) in eukaryotes. The ChoK
subfamily is part of a larger superfamily that includes
the catalytic domains of other kinases, such as the
typical serine/threonine/tyrosine protein kinases (PKs),
RIO kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). It is composed of
bacterial and eukaryotic choline kinases, as well as
eukaryotic ethanolamine kinase. ChoK catalyzes the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to its substrate, choline, producing phosphorylcholine
(PCho), a precursor to the biosynthesis of two major
membrane phospholipids, phosphatidylcholine (PC) and
sphingomyelin (SM). Although choline is the preferred
substrate, ChoK also shows substantial activity towards
ethanolamine and its N-methylated derivatives. ChoK
plays an important role in cell signaling pathways and
the regulation of cell growth. Along with PCho, it is
involved in malignant transformation through Ras
oncogenes in various human cancers such as breast, lung,
colon, prostate, neuroblastoma, and hepatic lymphoma. In
mammalian cells, there are three ChoK isoforms (A-1,
A-2, and B) which are active in homo or heterodimeric
forms.
Length = 302
Score = 118 bits (297), Expect = 4e-31
Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 15/135 (11%)
Query: 33 IETALSKTKSPVVFCHNDLLLGNIIYDE---TEDKVTFIDYEYAGVNYQAFDIANHFDEF 89
+E+ ++ SPVVFCHNDL GNI+ K+ ID+EYA NY+ FDIANHF E+
Sbjct: 168 LESTSEESGSPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYNYRGFDIANHFCEW 227
Query: 90 AG--------VSPIDHSRYPGPEFQLSWLRTYLEEY----TGSPPSPHQLATLHWQVQQF 137
I +YP E +L+++ YL E ++ L +V+ F
Sbjct: 228 MYDYHDPEPPFFKIHEDKYPTEEQRLNFISAYLSESLKGKNSVEEREKEVKDLLEEVEIF 287
Query: 138 SPVAHCFWTIWGLVQ 152
+P +H FW +WG++Q
Sbjct: 288 TPASHLFWALWGIIQ 302
Score = 64.2 bits (157), Expect = 1e-11
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 189 QILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHS---- 244
L L P+LY F NG + +++ T+T + +R+P I +AR MA+LH +
Sbjct: 55 ARLSERNLGPKLYGIFPNGRIEEFIPSRTLTTEELRDPDISAEIARRMAKLHSIVVPLSP 114
Query: 245 --NMKTPKLWSTGKHMLSLIPRTYSNPDKQERY 275
TP +W K L L D
Sbjct: 115 EERDLTPAIWKLLKQWLDLAETVIEIVDSDSEK 147
>gnl|CDD|216617 pfam01633, Choline_kinase, Choline/ethanolamine kinase. Choline
kinase catalyzes the committed step in the synthesis of
phosphatidylcholine by the CDP-choline pathway. This
alignment covers the protein kinase portion of the
protein. The divergence of this family makes it very
difficult to create a model that specifically predicts
choline/ethanolamine kinases only. However if [add Pfam
ID here for Choline_kinase_C] is also present then it is
definitely a member of this family.
Length = 206
Score = 113 bits (284), Expect = 4e-30
Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Query: 23 VSQLQSDWQYIETALSKTKSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDI 82
+ L+ + +E L +SP+VFCHNDL GNI+ D + +++ ID+EYA NY+AFDI
Sbjct: 118 LEDLEKEINELEKLLENLESPIVFCHNDLQPGNILLDNSTNRLVLIDFEYASYNYRAFDI 177
Query: 83 ANHFDEFAGV------SPIDHSRYPGPEF 105
ANHF E+AG D+S YP E
Sbjct: 178 ANHFCEWAGDYHEPEPFKCDYSLYPTEEE 206
Score = 70.8 bits (174), Expect = 2e-14
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 190 ILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVH-SNMKT 248
+L GL P+LY F NG V +++ T++ + +R+P I +A+ + H + K+
Sbjct: 29 LLSERGLGPKLYGFFPNGRVEEFIPSRTLSAEDLRDPEISKKIAKRLREFHDIEPPGKKS 88
Query: 249 PKLWSTGKHMLS-LIPRTYSNPDKQERYCS 277
P L+ T + T+ N +K +
Sbjct: 89 PSLFDT---IRKWEAQITFENVNKSKGLKL 115
>gnl|CDD|240350 PTZ00296, PTZ00296, choline kinase; Provisional.
Length = 442
Score = 87.6 bits (217), Expect = 2e-19
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 15/143 (10%)
Query: 44 VVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEFA-----GVSP---I 95
+VFCHNDL NII T + ID+EY+G N+ A DIAN F E P I
Sbjct: 284 IVFCHNDLQENNII--NTNKCLRLIDFEYSGYNFLATDIANFFIETTIDYSVSHYPFFAI 341
Query: 96 DHSRYPGPEFQLSWLRTYLEEYTGSP---PSPHQLATLHWQVQQFSPVAHCFWTIWGLVQ 152
D +Y E + ++ YL Y P+P + + V+ + AH W W +++
Sbjct: 342 DKKKYISYENRKLFITAYLSNYLDKSLVVPNPKIIDQILEAVEVQALGAHLLWGFWSIIR 401
Query: 153 AEHSDI--EFDFFQYASSTYQGY 173
+ EFDFF YA ++ Y
Sbjct: 402 GYQTKSYNEFDFFLYAKERFKMY 424
Score = 34.1 bits (78), Expect = 0.097
Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 191 LHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNMKTPK 250
+ + +AP+L F G + +++ G + D ++ P I +A + + H + P+
Sbjct: 166 MSKYRIAPQLLNTFSGGRIEEWLYGDPLRIDDLKNPSILIGIANVLGKFHTLSRKRHLPE 225
Query: 251 LWSTGKHMLSLIPR------TYSNPDKQERYCSR 278
W + ++ + Y N +K +R +
Sbjct: 226 HWDRTPCIFKMMEKWKNQLSKYKNIEKYQRDIHK 259
>gnl|CDD|240172 cd05151, ChoK, Choline Kinase (ChoK). The ChoK subfamily is part of
a larger superfamily that includes the catalytic domains
of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). It is composed of
bacterial and eukaryotic choline kinases, as well as
eukaryotic ethanolamine kinase. ChoK catalyzes the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to its substrate, choline, producing phosphorylcholine
(PCho), a precursor to the biosynthesis of two major
membrane phospholipids, phosphatidylcholine (PC), and
sphingomyelin (SM). Although choline is the preferred
substrate, ChoK also shows substantial activity towards
ethanolamine and its N-methylated derivatives. Bacterial
ChoK is also referred to as licA protein. ETNK catalyzes
the transfer of the gamma-phosphoryl group from CTP to
ethanolamine (Etn), the first step in the CDP-Etn
pathway for the formation of the major phospholipid,
phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK
shows specific activity for its substrate and displays
negligible activity towards N-methylated derivatives of
Etn. ChoK plays an important role in cell signaling
pathways and the regulation of cell growth.
Length = 170
Score = 74.6 bits (184), Expect = 3e-16
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 43 PVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEF 89
+V CHNDLL GN + D+ ++ ID+EYAG+N FD+AN F E
Sbjct: 106 DLVPCHNDLLPGNFLLDD--GRLWLIDWEYAGMNDPLFDLANFFSEA 150
Score = 40.7 bits (96), Expect = 2e-04
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 189 QILHRAGLAPRLYA--EFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSN 245
++ AG+ P+LY L+ +++ G + + +P +A+ + +LH
Sbjct: 47 KLAAEAGIGPKLYYFDPETGVLITEFIEGSELLTEDFSDPENLEKIAKLLKKLHSSPLP 105
>gnl|CDD|223584 COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme
transport and metabolism].
Length = 269
Score = 65.9 bits (161), Expect = 2e-12
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 27/136 (19%)
Query: 32 YIETALSKTKSPV-VFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEFA 90
+ AL + V CHNDL GN++ + + + ID+EYAG+N AFD+A E+
Sbjct: 140 ELRRALEEVPKDDLVPCHNDLNPGNLLLTD-KGGLFLIDWEYAGLNDPAFDLAALLSEY- 197
Query: 91 GVSPIDHSRYPGPEFQLSWLRTYLEEYTGSPPSPHQLATLHWQVQQFSPVAHCFWTIWGL 150
+ E + + YLE+Y + ++ +Q+F W +W
Sbjct: 198 ------IFNH--NELEDLY-SAYLEKY------GFEAVLIYKILQKF------LWYLWTK 236
Query: 151 VQAEHSDIEFDFFQYA 166
+Q I DF Y
Sbjct: 237 LQ---EQILEDFGWYD 249
>gnl|CDD|173576 PTZ00384, PTZ00384, choline kinase; Provisional.
Length = 383
Score = 59.0 bits (143), Expect = 7e-10
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 32 YIETALSKTKSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEFAG 91
++ T+ S T S V+FCHNDL NI+ + + FID+++AG NY ++IAN F +
Sbjct: 216 HLNTSNSITNS-VLFCHNDLFFTNIL--DFNQGIYFIDFDFAGFNYVGWEIANFFVKLYI 272
Query: 92 V--SPIDHSRYPGPEFQLS------WLRTYLEEYTGSP--PSPHQLATLHWQVQQFSPVA 141
V P LS ++ YL + G PS + ++ +
Sbjct: 273 VYDPPTPPYFNSDDSLALSEEMKTIFVSVYLSQLLGKNVLPSDDLVKEFLQSLEIHTLGV 332
Query: 142 HCFWTIWGLVQAEHSDIEFDF 162
+ FWT WG+V + E
Sbjct: 333 NLFWTYWGIVMNDKPKNELSK 353
Score = 28.6 bits (64), Expect = 4.9
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 167 SSTYQGYVLKRD------KYLGTSPPSPQILHRAGLAPRLYAEFDNGLVYQYVRGVTITP 220
SSTY V+ D K LG + P+I+ R F + + ++V G T+
Sbjct: 89 SSTYNSLVIDNDLQYNIAKLLGDNNFGPKIIGR----------FGDFTIQEWVEGNTMGI 138
Query: 221 DSIREPHIHPLVARNMARLHKVHSNMKTPKLW 252
DS++ + +A ++A+ HK + + PK W
Sbjct: 139 DSLQNLSVLTGIASSLAKFHKRVTEL-VPKEW 169
>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH)
and Choline Kinase (ChoK) family. The APH/ChoK family is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). The family is composed
of APH, ChoK, ethanolamine kinase (ETNK), macrolide
2'-phosphotransferase (MPH2'), an unusual homoserine
kinase, and uncharacterized proteins with similarity to
the N-terminal domain of acyl-CoA dehydrogenase 10
(ACAD10). The members of this family catalyze the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to small molecule substrates such as aminoglycosides,
macrolides, choline, ethanolamine, and homoserine.
Phosphorylation of the antibiotics, aminoglycosides and
macrolides, leads to their inactivation and to bacterial
antibiotic resistance. Phosphorylation of choline,
ethanolamine, and homoserine serves as precursors to the
synthesis of important biological compounds, such as the
major phospholipids, phosphatidylcholine and
phosphatidylethanolamine and the amino acids, threonine,
methionine, and isoleucine.
Length = 155
Score = 52.8 bits (127), Expect = 1e-08
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 45 VFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHF 86
V CH DL GNI+ D+ + ID+EYAG AFD+A
Sbjct: 109 VLCHGDLHPGNILVDD-GKILGIIDWEYAGYGPPAFDLAAAL 149
>gnl|CDD|216618 pfam01636, APH, Phosphotransferase enzyme family. This family
consists of bacterial antibiotic resistance proteins,
which confer resistance to various aminoglycosides they
include: aminoglycoside 3'-phosphotransferase or
kanamycin kinase / neomycin-kanamycin phosphotransferase
and streptomycin 3''-kinase or streptomycin
3''-phosphotransferase. The aminoglycoside
phosphotransferases inactivate aminoglycoside
antibiotics via phosphorylation. This family also
includes homoserine kinase. This family is related to
fructosamine kinase pfam03881.
Length = 238
Score = 49.1 bits (117), Expect = 7e-07
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 15/101 (14%)
Query: 30 WQYIETALSKT--KSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFD 87
W+ + AL P+V H DL GN++ D ID+E AG+ A+D+A+
Sbjct: 149 WERLLAALLALLPALPLVLVHGDLHPGNLLVDPGGRVTGVIDFEDAGLGDPAYDLASLL- 207
Query: 88 EFAGVSPIDHSRYPGPEFQLSWLRTYLEEYTGSPPSPHQLA 128
R G E L YL Y G+ P P +L
Sbjct: 208 -----------RSLGEELGAELLAAYLAAY-GAAPDPARLR 236
>gnl|CDD|131952 TIGR02906, spore_CotS, spore coat protein, CotS family. Members of
this family include the spore coat proteins CotS and
YtaA from Bacillus subtilis and, from other
endospore-forming bacteria, homologs that are more
closely related to these two than to the spore coat
proteins YutH and YsxE. The CotS family is more broadly
distributed than YutH or YsxE, but still is not
universal among spore-formers [Cellular processes,
Sporulation and germination].
Length = 313
Score = 43.0 bits (102), Expect = 1e-04
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 38 SKTKSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIAN 84
+ K FCH D NI+ +++V ID++Y ++ D+
Sbjct: 181 KEAKKIRGFCHQDYAYHNILLK--DNEVYVIDFDYCTIDLPVRDLRK 225
>gnl|CDD|225213 COG2334, COG2334, Putative homoserine kinase type II (protein
kinase fold) [General function prediction only].
Length = 331
Score = 37.3 bits (87), Expect = 0.007
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 47 CHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIA 83
H DL N+++D+ D FID++ AG + +D+A
Sbjct: 200 IHGDLHPDNVLFDDDTDVSGFIDFDDAGYGWFIYDLA 236
>gnl|CDD|225714 COG3173, COG3173, Predicted aminoglycoside phosphotransferase
[General function prediction only].
Length = 321
Score = 36.6 bits (85), Expect = 0.012
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 43 PVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIA----NHFDEFAGVSPIDHS 98
P V H D GN+I D +D+E A + D+A FDE A +
Sbjct: 197 PPVLVHGDYRPGNLIIDP-GRPTGVLDWELATLGDPLEDLAIICWTIFDEPAARAIFRLG 255
Query: 99 RYPGPEFQLSWLR 111
E ++ R
Sbjct: 256 VPALDELLATYAR 268
>gnl|CDD|225719 COG3178, COG3178, Predicted phosphotransferase related to Ser/Thr
protein kinases [General function prediction only].
Length = 351
Score = 34.7 bits (80), Expect = 0.046
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 16/98 (16%)
Query: 42 SPVVFCHNDLLLGNIIY---DETEDKVTFIDYEYAGVNYQAFDIANHF-DEFAGVSPIDH 97
P V H D N+++ D+V +D++ A + A+D+A+ D SP
Sbjct: 198 QPKVLVHRDFHSRNLMWTADRAGADRVGVLDFQDALIGPIAYDVASLLRDARVTWSP--- 254
Query: 98 SRYPGPEFQLSWLRTYLEE--YTGSPPS-PHQLATLHW 132
E +L+ L Y G P L W
Sbjct: 255 ------ERELALLDRYWAARRAAGLPFDEAAFLRAYAW 286
>gnl|CDD|233983 TIGR02721, ycfN_thiK, thiamine kinase. Members of this family are
the ycfN gene product of Escherichia coli, now
identified as the salvage enzyme thiamine kinase (thiK),
and additional proteobacterial homologs taken to be
orthologs with equivalent function [Biosynthesis of
cofactors, prosthetic groups, and carriers, Thiamine].
Length = 256
Score = 33.9 bits (78), Expect = 0.069
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 189 QILHR---AGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLH 240
QIL GLAP+ ++ L+ +++ G IT D + +A + +LH
Sbjct: 43 QILQALSALGLAPKPILVNEHWLLVEWLEGEVITLDQFVALDLLLELAALLHQLH 97
Score = 32.0 bits (73), Expect = 0.32
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 43 PVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIA 83
P+ H D+ N++ T + ID+EYA A ++A
Sbjct: 145 PLAPLHMDVHAYNLV--VTPQGLKLIDWEYASDGDIALELA 183
>gnl|CDD|240175 cd05154, ACAD10_11_like, Acyl-CoA dehydrogenase (ACAD) 10 and 11,
N-terminal domain, and similar proteins. This subfamily
is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). This subfamily is
composed of bacterial and eukaryotic proteins with
similarity to the N-terminal domains of vertebrate
ACAD10 and ACAD11. ACADs are a family of flavoproteins
that are involved in the beta-oxidation of fatty
acyl-CoA derivatives. ACAD deficiency can cause
metabolic disorders including muscle fatigue,
hypoglycemia, and hepatic lipidosis, among them. There
are at least 11 distinct ACADs, some of which show
distinct substrate specificities to either
straight-chain or branched-chain fatty acids. ACAD10 is
widely expressed in human tissues and is highly
expressed in liver, kidney, pancreas, and spleen. ACAD10
and ACAD11 contain a long N-terminal domain with
similarity to phosphotransferases with a PK fold, which
is absent in other ACADs. They may exhibit multiple
functions in acyl-CoA oxidation pathways.
Length = 223
Score = 33.7 bits (78), Expect = 0.083
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 42 SPVVFCHNDLLLGNIIYDETEDKVT-FIDYEYAGVNYQAFDIANH 85
S H D LGN+++ E +V +D+E A + D+
Sbjct: 172 SRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLGDPLADLGWL 216
>gnl|CDD|217303 pfam02958, EcKinase, Ecdysteroid kinase. This family includes
ecdysteroid 22-kinase, an enzyme responsible for the
phosphorylation of ecdysteroids (insect growth and
moulting hormones) at C-22, to form physiologically
inactive ecdysteroid 22-phosphates.
Length = 293
Score = 33.0 bits (76), Expect = 0.16
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 18/78 (23%)
Query: 30 WQYIETALSKTKSP-VVFCHNDLLLGNII--YDETE--DKVTFIDYEYAGVNYQAFDIA- 83
+ + + V H DL + NI+ YDE + V +D++ + A D+
Sbjct: 199 FDRLLRLVDPNPDEFNVLNHGDLWVNNIMFKYDEEGEPEDVILVDFQLSRYGSPALDLLY 258
Query: 84 ------------NHFDEF 89
HFDE
Sbjct: 259 FLYTSTSPELRLEHFDEL 276
>gnl|CDD|240174 cd05153, HomoserineK_II, Homoserine Kinase, type II. Homoserine
kinase is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). This subfamily is
composed of unusual homoserine kinases, from a subset of
bacteria, which have a PK fold. These proteins do not
bear any similarity to the GHMP family homoserine
kinases present in most bacteria and eukaryotes.
Homoserine kinase catalyzes the transfer of the
gamma-phosphoryl group from ATP to L-homoserine
producing L-homoserine phosphate, an intermediate in the
production of the amino acids threonine, methionine, and
isoleucine.
Length = 296
Score = 31.0 bits (71), Expect = 0.60
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 48 HNDLLLGNIIYDETEDKVT-FIDYEYAGVNYQAFDIA 83
H DL N+++D D+++ ID+ +A + +D+A
Sbjct: 179 HADLFRDNVLFDG--DELSGVIDFYFACTDAFLYDLA 213
>gnl|CDD|227194 COG4857, COG4857, Predicted kinase [General function prediction
only].
Length = 408
Score = 31.0 bits (70), Expect = 0.76
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 47 CHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIAN 84
H DL G+I E E KV ID E+A AFDI
Sbjct: 231 IHGDLHSGSIFVTEKETKV--IDPEFAFYGPMAFDIGM 266
>gnl|CDD|240171 cd05150, APH, Aminoglycoside 3'-phosphotransferase (APH). The APH
subfamily is part of a larger superfamily that includes
the catalytic domains of other kinases, such as the
typical serine/threonine/tyrosine protein kinases (PKs),
RIO kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). APH catalyzes the
transfer of the gamma-phosphoryl group from ATP to
aminoglycoside antibiotics such as kanamycin,
streptomycin, neomycin, and gentamicin, among others.
The aminoglycoside antibiotics target the 30S ribosome
and promote miscoding, leading to the production of
defective proteins which insert into the bacterial
membrane, resulting in membrane damage and the ultimate
demise of the bacterium. Phosphorylation of the
aminoglycoside antibiotics results in their
inactivation, leading to bacterial antibiotic
resistance. The APH gene is found on transposons and
plasmids and is thought to have originated as a
self-defense mechanism used by microorganisms that
produce the antibiotics.
Length = 244
Score = 30.7 bits (70), Expect = 0.83
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 45 VFCHNDLLLGNIIYDETEDKVT-FIDYEYAGV--NYQAFDIA 83
V H D L NII D K + FID GV YQ D+A
Sbjct: 164 VVTHGDACLPNIIVD--PGKFSGFIDLGRLGVADRYQ--DLA 201
>gnl|CDD|234054 TIGR02904, spore_ysxE, spore coat protein YsxE. Members of this
family are homologs of the Bacillus subtilis spore coat
protein CotS. Members of this family, designated YsxE,
are found only in the family Bacillaceae, from among the
endospore-forming members of the Firmicutes branch of
the Bacteria. As a rule, the ysxE gene is found
immediately downstream of spoVID, a gene necessary for
spore coat assembly. The protein has been shown to be
part of the spore coat [Cellular processes, Sporulation
and germination].
Length = 309
Score = 30.9 bits (70), Expect = 0.88
Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 28 SDWQYIETALSKTKSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFD 87
DW E K V H L L + +YDET FI++E A D+A F
Sbjct: 182 EDWH--EATKEKESWRTVLVHGKLSLSHFLYDETRGGY-FINFEKASFASPLTDLAAFFR 238
Query: 88 EFAGVSPIDHSRYPGPEFQLSWLRTYLEEY 117
G P P E W TY +
Sbjct: 239 RSFGTYPQ-----PIDE-MFEWFYTYEKTL 262
>gnl|CDD|235369 PRK05231, PRK05231, homoserine kinase; Provisional.
Length = 319
Score = 29.8 bits (68), Expect = 1.8
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 26 LQSDWQYIETALSKTKSPVV---FCHNDLLLGNIIYDETEDKVT-FIDYEYAGVNYQAFD 81
L+++ L+ P + H DL N++++ D+++ FID+ +A + +D
Sbjct: 166 LEAELAAQLAFLASAAWPALPRGVIHADLFRDNVLFEG--DRLSGFIDFYFACNDKLLYD 223
Query: 82 IA 83
+A
Sbjct: 224 VA 225
>gnl|CDD|217174 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family.
This family consists of taurine catabolism dioxygenases
of the TauD, TfdA family. TauD from E. coli is a
alpha-ketoglutarate-dependent taurine dioxygenase. This
enzyme catalyzes the oxygenolytic release of sulfite
from taurine. TfdA from Burkholderia sp. is a
2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate
dioxygenase. TfdA from Alcaligenes eutrophus JMP134 is a
2,4-dichlorophenoxyacetate monooxygenase. Also included
are gamma-Butyrobetaine hydroxylase enzymes
EC:1.14.11.1.
Length = 215
Score = 29.2 bits (66), Expect = 2.1
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 196 LAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSN 245
L+P L GL + +R P HP+V + KV N
Sbjct: 96 LSPELKERLAEGLRAVHSYPDGHYDAGLRPPSRHPVVRTHPVTGRKVLFN 145
>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional.
Length = 267
Score = 29.4 bits (67), Expect = 2.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 46 FCHNDLLLGNIIYDETEDKVTFIDY 70
HND+ L N++YD +D++ DY
Sbjct: 130 IIHNDIKLENVLYDRAKDRIYLCDY 154
>gnl|CDD|214734 smart00587, CHK, ZnF_C4 abd HLH domain containing kinases domain.
subfamily of choline kinases.
Length = 196
Score = 28.8 bits (65), Expect = 3.1
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 17/73 (23%)
Query: 34 ETALSKTKSPVVFCHNDLLLGNIIYDETEDK----VTFIDYEYAGVNYQAFDIAN----- 84
E V H DL NI++ ++ V ID++ + A D+
Sbjct: 110 EDKEPDEGEFNVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGSPAEDLHYFLLTS 169
Query: 85 --------HFDEF 89
HFDE
Sbjct: 170 LSVEIRREHFDEL 182
>gnl|CDD|215780 pfam00190, Cupin_1, Cupin. This family represents the conserved
barrel domain of the 'cupin' superfamily ('cupa' is the
Latin term for a small barrel). This family contains 11S
and 7S plant seed storage proteins, and germins. Plant
seed storage proteins provide the major nitrogen source
for the developing plant.
Length = 139
Score = 28.0 bits (63), Expect = 3.4
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 213 VRGVTITPDSIREPHIHP 230
VR I P + PH HP
Sbjct: 36 VRRDLIEPGGLLLPHYHP 53
>gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 117
Score = 27.1 bits (60), Expect = 5.7
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 91 GVSPIDHSRY---PGPEFQLSWLRTYL-EEYTGSPPSPHQLATLHWQVQQFSPVAH 142
GV P+ ++ P +L L Y+ + G P+ + A +HW +A
Sbjct: 55 GVDPLSYTYLCSLYHPTSELQLLHYYVVTFWQGEIPA-QEAAEVHWMTANDIVLAS 109
>gnl|CDD|173550 PTZ00357, PTZ00357, methyltransferase; Provisional.
Length = 1072
Score = 28.5 bits (63), Expect = 6.6
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 192 HRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHI---HPLVARNMAR 238
+ A +AP + A FD + V+G+T+ P + H H L+ N++R
Sbjct: 843 YTAWVAPLMSATFDAAVTEAAVKGLTVPPPGCHDHHAALNHTLLVTNLSR 892
>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7;
Provisional.
Length = 566
Score = 27.8 bits (62), Expect = 7.8
Identities = 26/99 (26%), Positives = 31/99 (31%), Gaps = 36/99 (36%)
Query: 48 HNDLLLGNIIYDETEDKVTFIDYEYA-----GVNYQAFDIANHFDEFAGVSPIDHSRYPG 102
H D+ NII+ E ID A G+NY EF + RY
Sbjct: 278 HRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIP-------KEF-----LLDPRYAA 325
Query: 103 PEFQLSWLRTYLEEY-----TGSPPSPHQLATLH---WQ 133
P E+Y T S PS L WQ
Sbjct: 326 P-----------EQYIMSTQTPSAPSAPVATALSPVLWQ 353
>gnl|CDD|165313 PHA03013, PHA03013, hypothetical protein; Provisional.
Length = 109
Score = 26.7 bits (59), Expect = 8.1
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 38 SKTKSPVVFCHNDLLL---GNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEF 89
+K K +F + + G I +D +D +TF ++ G +Y FDI N D+F
Sbjct: 51 NKLKIITLFLSKNTIYKAQGIITFDLIKDTITF---KFRGNSY-IFDIINDIDKF 101
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.412
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,290,579
Number of extensions: 1553145
Number of successful extensions: 1236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1215
Number of HSP's successfully gapped: 49
Length of query: 317
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 220
Effective length of database: 6,635,264
Effective search space: 1459758080
Effective search space used: 1459758080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)