RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8745
(317 letters)
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase,
structural genomics CONS SGC, hemicholinium-3,
phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens}
PDB: 3lq3_A* 2ig7_A*
Length = 379
Score = 140 bits (354), Expect = 4e-39
Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 16/174 (9%)
Query: 30 WQYIETALSKTKSPVVFCHNDLLLGNIIY---DETEDKVTFIDYEYAGVNYQAFDIANHF 86
+ L T SPVVFCHND+ GNI+ E D + +D+EY+ NY+ FDI NHF
Sbjct: 206 MGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYNYRGFDIGNHF 265
Query: 87 DEFAG--------VSPIDHSRYPGPEFQLSWLRTYLEEYTGSPPSPHQ-----LATLHWQ 133
E+ + YP E QL ++R YL E + L +
Sbjct: 266 CEWVYDYTHEEWPFYKARPTDYPTQEQQLHFIRHYLAEAKKGETLSQEEQRKLEEDLLVE 325
Query: 134 VQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYASSTYQGYVLKRDKYLGTSPPS 187
V +++ +H FW +W ++QA S IEF + YA S +Q Y ++ + S
Sbjct: 326 VSRYALASHFFWGLWSILQASMSTIEFGYLDYAQSRFQFYFQQKGQLTSVHSSS 379
Score = 63.4 bits (153), Expect = 2e-11
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 189 QILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNMKT 248
IL L P+LY F G + QY+ + +REP + +A MA+ H +
Sbjct: 108 AILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTK 167
Query: 249 PK--LWSTGKHMLSLIPRTYSNPDKQERYC 276
L+ T + L I +
Sbjct: 168 EPHWLFGTMERYLKQIQDLPPTGLPEMNLL 197
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase,
structural genomics consortium, SGC, hemicholinium-3,
alternative splicing, cytoplasm; HET: ADP HC6; 1.70A
{Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A
2ckp_A* 2ckq_A*
Length = 401
Score = 133 bits (335), Expect = 3e-36
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 19/169 (11%)
Query: 24 SQLQSDWQYIETALSKTKSPVVFCHNDLLLGNIIY-----DETEDKVTFIDYEYAGVNYQ 78
L + + + + L T SPVVFCHND GNI+ + + K+ ID+EY+ NY+
Sbjct: 224 YNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYR 283
Query: 79 AFDIANHFDEFA--------GVSPIDHSRYPGPEFQLSWLRTYLEEYTGSPPSPHQLAT- 129
FDI NHF E+ + +YP + QL ++ +YL + +
Sbjct: 284 GFDIGNHFCEWMYDYSYEKYPFFRANIRKYPTKKQQLHFISSYLPAFQNDFENLSTEEKS 343
Query: 130 -----LHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYASSTYQGY 173
+ +V +F+ +H W +W +VQA+ S IEF + YA + + Y
Sbjct: 344 IIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYAQARFDAY 392
Score = 67.0 bits (162), Expect = 1e-12
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 189 QILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHS--NM 246
IL L P+LY F G + Q++ + + + P I +A MA H + N
Sbjct: 129 AILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNK 188
Query: 247 KTPKLWSTGKHMLSLIPRTYSN-PDKQERY 275
+ L+ T + L + R + ++
Sbjct: 189 EPKWLFGTMEKYLKEVLRIKFTEESRIKKL 218
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase
fold, transferase; 2.02A {Caenorhabditis elegans} SCOP:
d.144.1.8
Length = 429
Score = 133 bits (336), Expect = 4e-36
Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 37/194 (19%)
Query: 25 QLQSDWQYIETALSKTKSPVVFCHNDLLLGNII--------------------------- 57
L + +++ +S +KSPV FCHNDL GNI+
Sbjct: 230 DLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSA 289
Query: 58 YDETEDKVTFIDYEYAGVNYQAFDIANHFDEFAGV--------SPIDHSRYPGPEFQLSW 109
++ + ++ ID+EYA NY+AFD ANHF E+ I +P + L +
Sbjct: 290 FNPADPRLVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEF 349
Query: 110 LRTYLEEYTGSPPSP--HQLATLHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYAS 167
YL E + + + L + F PV+H FW +WGL+Q E S + F F Y
Sbjct: 350 FLNYLREQGNTRENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGR 409
Query: 168 STYQGYVLKRDKYL 181
Y +
Sbjct: 410 DRLSLYFKHKQLLK 423
Score = 65.0 bits (157), Expect = 5e-12
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 189 QILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNMKT 248
+L L P+LY F G + +Y+ ++ I H+ +A+ +A++H++ +
Sbjct: 130 TLLSERHLGPKLYGIFSGGRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLEVPIWK 189
Query: 249 PK--LWSTGKHMLSLIPRTYSNPDKQ 272
L + L + T +
Sbjct: 190 EPDYLCEALQRWLKQLTGTVDAEHRF 215
>3mes_A Choline kinase; malaria, structural genomics, structural genomics
consortium, SGC, transferase; HET: ADP DME PT3; 2.35A
{Cryptosporidium parvum}
Length = 424
Score = 132 bits (333), Expect = 1e-35
Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
Query: 31 QYIETALSKTKSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEF- 89
+ +E L +VF HNDL N++ + + + IDYEY+ +N+ DIAN+F E+
Sbjct: 249 RALELKLYSPAFSLVFAHNDLQENNLLQTQ--NNIRMIDYEYSAINFAGADIANYFCEYI 306
Query: 90 -------AGVSPIDHSRYPGPEFQLSWLRTYLEEYTGSP--PSPHQLATLHWQVQQFSPV 140
+ YP E + ++ YL + PS + + V+ F+ +
Sbjct: 307 YDYCSEKQPYFKFKYEDYPCEELRKLFISVYLSQTLQEQVMPSQQIVHIMTKAVEVFTLI 366
Query: 141 AHCFWTIWGLVQA---EHSDIEFDFFQYASSTYQGYVLKRDKYL 181
+H W +W + + + + +EFDF +YA++ + Y+ K+ + +
Sbjct: 367 SHITWGLWSIARTPGYQPNSVEFDFTEYANTRFTHYLQKKKELI 410
Score = 62.4 bits (150), Expect = 4e-11
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 189 QILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNM-- 246
+ L +AP + A+F G + +++ G +T ++ HI VA+NM LH ++S
Sbjct: 128 RYLSNINIAPNIIADFPEGRIEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRAD 187
Query: 247 ------KTPKLWSTGKHMLSLIPRTYSNPDKQERY 275
K P L+ S + Q
Sbjct: 188 FPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDK 222
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics
consortium, transferase; 2.41A {Plasmodium vivax}
Length = 458
Score = 124 bits (311), Expect = 2e-32
Identities = 50/190 (26%), Positives = 74/190 (38%), Gaps = 42/190 (22%)
Query: 24 SQLQSDWQYIETALSKTKSPVVFCHNDLLLGNIIYDETE--------------------- 62
L+ +E+ + SP+V CH DLL NII
Sbjct: 270 DVLRDSIVEVESLCKRENSPIVLCHCDLLSSNIINTVGGGEAGELGEAGETGEGGETGEG 329
Query: 63 ---------------DKVTFIDYEYAGVNYQAFDIANHFDEFAGVSPIDHSRYPGPEFQL 107
D ++FID+EY+ +A+DIANHF+E+AG D P E +
Sbjct: 330 GETGEGGETGEGGEGDSISFIDFEYSCPMERAYDIANHFNEYAGF-NCDWDLTPSKEEEY 388
Query: 108 SWLRTYLEEYTGSPPSPHQLATLHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYAS 167
++ YL + L ++Q F +H W +W L+Q HS I+FDF Y
Sbjct: 389 HFIMHYLGTDD-----EELINQLIREIQPFYICSHINWGLWSLLQGMHSSIDFDFINYGM 443
Query: 168 STYQGYVLKR 177
+ L
Sbjct: 444 TRLTASCLPI 453
Score = 57.5 bits (137), Expect = 2e-09
Identities = 19/101 (18%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Query: 189 QILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNMKT 248
IL+ +A ++Y F NG + +++ G ++ + I+ P L+A+N+ LH + N
Sbjct: 159 CILYNKNIAKKIYVFFTNGRIEEFMDGYALSREDIKNPKFQKLIAKNLKLLHDIKLNENL 218
Query: 249 PKLWSTGKHM-LSLIPRTYSNPDKQERYCSRAQSLTSSEPK 288
K + + + ++ K + + S
Sbjct: 219 YKELQVTQKVPGTRPSFLWNTIWKYFHLLNEERKKICSFDA 259
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural
genomics, structural genomics consortium; 2.20A
{Plasmodium knowlesi} PDB: 3fi8_A*
Length = 369
Score = 121 bits (304), Expect = 4e-32
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 15/172 (8%)
Query: 29 DWQYIETALSKTKSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDE 88
+ + + + +VFCHNDL NII + ID+EY+G N+ A DIAN F E
Sbjct: 197 KFMKVYSKSDNLANTIVFCHNDLQENNIINTN--KCLRLIDFEYSGFNFLATDIANFFIE 254
Query: 89 FA--------GVSPIDHSRYPGPEFQLSWLRTYLEEYTG---SPPSPHQLATLHWQVQQF 137
+ ID +Y E + ++ YL Y P+P + + V+
Sbjct: 255 TSIDYSVSSYPFFEIDKKKYISYENRKLFITAYLSNYLDKSLVVPTPKLIDEILEAVEVQ 314
Query: 138 SPVAHCFWTIWGLVQAEH--SDIEFDFFQYASSTYQGYVLKRDKYLGTSPPS 187
+ AH W W +++ S EFDFF YA + Y +++ + +
Sbjct: 315 ALGAHLLWGFWSIIRGYQTKSYNEFDFFLYAEQRLKMYDDQKEYLISNNIIK 366
Score = 64.6 bits (156), Expect = 6e-12
Identities = 14/94 (14%), Positives = 39/94 (41%)
Query: 189 QILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNMKT 248
+ + + +AP+L F+ G + +++ G + D ++ P I +A + + H +
Sbjct: 92 KTMSKYKIAPQLLNTFNGGRIEEWLYGDPLRIDDLKNPTILIGIANVLGKFHTLSRKRHL 151
Query: 249 PKLWSTGKHMLSLIPRTYSNPDKQERYCSRAQSL 282
P+ W + ++ + + K + +
Sbjct: 152 PEHWDRTPCIFKMMEKWKNQLFKYKNIEKYNCDI 185
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE; 2.55A
{Mesorhizobium loti}
Length = 301
Score = 115 bits (289), Expect = 2e-30
Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 20/153 (13%)
Query: 19 FPGGVSQLQSDWQYIETALSKTKSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQ 78
P G + + + +AL+ P+ CH D L N + +++ +D+EY+G+N
Sbjct: 148 LPAGYHDVVREAGGVRSALAAHPLPLAACHCDPLCENFLDTG--ERMWIVDWEYSGMNDP 205
Query: 79 AFDIANHFDEFAGVSPIDHSRYPGPEFQLSWLRTYLEEYTGSPPSPHQLATLHWQVQQFS 138
+D+ + E +R Y P + +V +
Sbjct: 206 LWDLGDLSVEG----------KFNANQDEELMRAYFGGE----ARPAERG----RVVIYK 247
Query: 139 PVAHCFWTIWGLVQAEHSDIEFDFFQYASSTYQ 171
+ WT+WGL+Q + + DF YA +
Sbjct: 248 AMCDLLWTLWGLIQLANDNPVDDFRAYADGRFA 280
Score = 40.9 bits (95), Expect = 4e-04
Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 189 QILHRAGLAPR-LYAEFDNG-LVYQYVRGV-TITPDSIRE-PHIHPLVARNMARLHKVHS 244
+ +AG++P L+ + G +V +Y+ G T++P+ + P +LH +
Sbjct: 63 REAAKAGVSPEVLHVDPATGVMVTRYIAGAQTMSPEKFKTRPGSPARAGEAFRKLHGSGA 122
Query: 245 NM-KTPKLWSTGKHMLSLIPRTYSN-PDKQERYCSRAQSL 282
+L++ L ++ P A +
Sbjct: 123 VFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGV 162
>2q83_A YTAA protein; 2635576, structural genomics, joint center for
structu genomics, JCSG, protein structure initiative,
PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus
subtilis}
Length = 346
Score = 52.3 bits (125), Expect = 6e-08
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 11/89 (12%)
Query: 29 DWQYIETALSKTKSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDE 88
Y+ + K CH D GN + E +++ ID + + D+
Sbjct: 208 QSTYVPW-TEQLKKSPNLCHQDYGTGNTLLGE-NEQIWVIDLDTVSFDLPIRDLRKM--- 262
Query: 89 FAGVSPIDHSRYPGPEFQLSWLRTYLEEY 117
I + L Y
Sbjct: 263 ------IIPLLDTTGVWDDETFNVMLNAY 285
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside
phosphotransferase, antibiotic resistance; HET: MES PG4;
1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A*
3q2m_A*
Length = 339
Score = 49.3 bits (117), Expect = 6e-07
Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 12/106 (11%)
Query: 23 VSQLQSDWQYIETALSKTKSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDI 82
+ +L + + + V CH+D+ GN++ E+ + ID++ + + D+
Sbjct: 185 IHRLVDTSEKLSKKIQPDLDKYVLCHSDIHAGNVLVGN-EESIYIIDWDEPMLAPKERDL 243
Query: 83 ANHFDEFAGVSPIDHSRYPGPEFQLSWLRTYLEEYTGSPPSPHQLA 128
+ ++ + E Y L+
Sbjct: 244 MFIG-----------GGVGNVWNKPHEIQYFYEGYGEINVDKTILS 278
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant
methionine recycling, refol transferase; HET: SR1 ADP;
1.90A {Arabidopsis thaliana}
Length = 420
Score = 44.6 bits (104), Expect = 3e-05
Identities = 18/137 (13%), Positives = 39/137 (28%), Gaps = 21/137 (15%)
Query: 45 VFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEFAGVSPIDHSRYPGPE 104
H DL G+++ T+D ID E++ FDI +
Sbjct: 233 ALIHGDLHTGSVMV--TQDSTQVIDPEFSFYGPMGFDIGAYLGNLI-------------- 276
Query: 105 FQLSWLRTYLEEYTGSPPSPHQLATLHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQ 164
L++ + ++ L Q ++ F +W +
Sbjct: 277 --LAFFAQDGHATQENDRKEYKQWILRTIEQTWNLFNKRFIALW---DQNKDGPGEAYLA 331
Query: 165 YASSTYQGYVLKRDKYL 181
+ + ++ Y+
Sbjct: 332 DIYNNTEVLKFVQENYM 348
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex,
transferase; HET: CPS ADP; 2.00A {Bacillus subtilis}
SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A*
2pup_A*
Length = 397
Score = 42.2 bits (98), Expect = 1e-04
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 45 VFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEF 89
H DL G+I +E + ID E+A FD+
Sbjct: 228 TLIHGDLHTGSIF--ASEHETKVIDPEFAFYGPIGFDVGQFIANL 270
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase,
aminoglycoside, phosphorylation, transferase-antibiotic
complex; HET: TOY; 1.80A {Enterococcus casseliflavus}
PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A*
3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A*
4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Length = 304
Score = 41.3 bits (97), Expect = 2e-04
Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 19/122 (15%)
Query: 30 WQYIETALSKTKSPVVFCHNDLLLGNIIYDETEDKVT-FIDYEYAGVNYQAFDIANHFDE 88
++ I K HND +I++D ++ + ID+ A ++ D + ++
Sbjct: 177 YRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMED 236
Query: 89 FAGVSPIDHSRYPGPEFQLSWLRTYLEEYTGSPPSPHQLATLHWQVQQFSPVAHCFWTIW 148
G EF + L Y + + +++ I+
Sbjct: 237 DEE---------YGMEF----VSKILNHYKH--KDIPTVLEKYRMKEKYWSFE---KIIY 278
Query: 149 GL 150
G
Sbjct: 279 GK 280
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 4e-04
Identities = 46/294 (15%), Positives = 72/294 (24%), Gaps = 118/294 (40%)
Query: 32 YIETALSKTKSPVVFCHNDLLL-----------------GNII-Y-DETEDKVTFIDYE- 71
YI A K P N L GN Y +E D Y+
Sbjct: 126 YIT-ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL-----YQT 179
Query: 72 YAGVNYQAFD-IANHFDEFAGVSPIDHSRYPGPEFQL-SWLRTYLEEYTGSPPSPHQLAT 129
Y + A E + +D + + WL + P L +
Sbjct: 180 YHVLVGDLIKFSAETLSELIR-TTLDAEKVFTQGLNILEWLEN-----PSNTPDKDYLLS 233
Query: 130 LHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYASSTYQGYVLKRDKYLGTSPPSPQ 189
P++ + G++Q H Y+ T
Sbjct: 234 --------IPIS---CPLIGVIQLAH------------------------YVVT------ 252
Query: 190 ILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNMKTP 249
G P G + Y++G T + + A +A
Sbjct: 253 -AKLLGFTP--------GELRSYLKGATGHSQGL-------VTAVAIA----------ET 286
Query: 250 KLWSTGKHMLSLIPRTYSNPDKQERY-------CSRAQSLTSSEPKITDRSLDH 296
W S + + K C A TS P I + SL++
Sbjct: 287 DSWE------SF----FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Score = 30.8 bits (69), Expect = 0.84
Identities = 50/231 (21%), Positives = 67/231 (29%), Gaps = 81/231 (35%)
Query: 19 FPG-GVSQLQSDWQYIETALSKTKSP---------VVFCHNDLLLGNIIYDETEDKVTFI 68
P GV QL Y+ TA +P L+ I ET+ +F
Sbjct: 238 CPLIGVIQLA---HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI-AETDSWESF- 292
Query: 69 DYEYAGVNYQAFDIANHFDEFAGVSPIDHSRYPGPEFQLSWLRTYLEEYTGSPPSPHQLA 128
+ +A + F F GV + YP S L LE G PSP L+
Sbjct: 293 -FVSV---RKAITVL--F--FIGVRC--YEAYPNTSLPPSILEDSLENNEG-VPSP-MLS 340
Query: 129 TLHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYASSTYQGYVLKRDKYLGTSPPSP 188
I L Q + Q YV K + +L P
Sbjct: 341 ------------------ISNLTQEQ---------------VQDYVNKTNSHL---PAGK 364
Query: 189 QI---LH---R----AGLAPRLYAEFDNGLVYQYVRGVTITP--DSIREPH 227
Q+ L + +G LY GL +R D R P
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLY-----GLN-LTLRKAKAPSGLDQSRIPF 409
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase,
kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP:
d.144.1.6
Length = 264
Score = 38.5 bits (89), Expect = 0.002
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 43 PVVFCHNDLLLGNIIYDETEDKVT-FIDYEYAGVNYQAFDIANHFDEFAGVSPIDHSRYP 101
+V H D L NI+ + + + FID GV + DIA + A
Sbjct: 183 DLVVTHGDACLPNIMVE--NGRFSGFIDCGRLGVADRYQDIALATRDIA--------EEL 232
Query: 102 GPEFQLSWLRTYLEEYTGSPPSPHQLA 128
G E W +L Y + P ++A
Sbjct: 233 GGE----WADRFLVLYGIAAPDSQRIA 255
Score = 31.5 bits (71), Expect = 0.27
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 189 QILHRAGL-APRLYAEFDNG----LVYQYVRGVTITPDSIREPHIHPLVARNMARLHKV 242
L G+ + L+ V G + + ++A M RLH +
Sbjct: 68 SWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLSSHLAPAEKVSIMADAMRRLHTL 126
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: MSE
ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A*
4dca_A* 3hav_A* 3ham_A*
Length = 320
Score = 38.6 bits (89), Expect = 0.002
Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 24/145 (16%)
Query: 16 QALFPGGVSQLQSDWQYIETALSKTKSPVVFCHNDLLLGNIIYDETEDKVT-FIDYEYAG 74
Q L + +++ ++ I + K HND N+I+ +++ ID+
Sbjct: 179 QLLTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFR--NNRLFGVIDFGDFN 236
Query: 75 VNYQAFDIANHFDEFAGVSPIDHSRYPGPEFQLSWLRTYLEEYTGSPPSPHQLATLHWQV 134
V D D + G EF R L+ Y P + V
Sbjct: 237 VGDPDNDFLCLLD--------CSTDDFGKEF----GRKVLKYYQHKAPEVAERKAELNDV 284
Query: 135 QQFSPVAHCFWTIWGLVQAEHSDIE 159
+W+I ++
Sbjct: 285 ---------YWSIDQIIYGYERKDR 300
>4fev_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine,
PP1, protein kinase inhibitor; HET: KAN PP1; 1.89A
{Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A*
4ej7_A* 3r78_A*
Length = 272
Score = 38.5 bits (89), Expect = 0.002
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 16/87 (18%)
Query: 43 PVVFCHNDLLLGNIIYDETEDKVT-FIDYEYAGVNYQAFDIANHFDEFAGVSPIDHSRYP 101
V H D L N+I+D E K+ ID G+ + D+A ++ SP
Sbjct: 192 DSVVTHGDFSLDNLIFD--EGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSP------- 242
Query: 102 GPEFQLSWLRTYLEEYTGSPPSPHQLA 128
S + ++Y P ++L
Sbjct: 243 ------SLQKRLFQKYGIDNPDMNKLQ 263
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.003
Identities = 42/271 (15%), Positives = 83/271 (30%), Gaps = 65/271 (23%)
Query: 68 IDYEYAGVNYQAFDIANHF-DEFAGVSPIDHSRYPGPEFQLSWLRTY-LEEYTGSPPSPH 125
+D+E YQ DI + F D F + + S L ++ S +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVD----NFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 126 QLATLHW--------QVQQFSPVAHCF---WTIWGLVQAEHSDIEFDFFQYASSTYQGYV 174
L W VQ+F + + ++ E S + Y+
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQ--------PSMMTRMYI 113
Query: 175 LKRDKYLGTSPP-SPQILHRAGLAPRLYAEFDNGLV-YQYVRGVTITPDSIREPHIH--- 229
+RD+ + + + R + Y + L+ + + V I
Sbjct: 114 EQRDRLYNDNQVFAKYNVSR----LQPYLKLRQALLELRPAKNVL----------IDGVL 159
Query: 230 -----PLVARNMARLHKVHSNMKTPKLWSTGKHMLSLIPRTYSNPDKQERYCSRAQSLTS 284
+ ++ +KV M W L + + ++ +
Sbjct: 160 GSGKTWVAL-DVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQI----- 209
Query: 285 SEPKITDRSLDHKAKIGRSEATTHAIESQKR 315
+P T RS DH + I + H+I+++ R
Sbjct: 210 -DPNWTSRS-DHSSNI---KLRIHSIQAELR 235
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase,
phosphorylation, transferase-antibiotic COMP; HET: ANP
B31; 2.10A {Enterococcus faecalis} PDB: 2b0q_A* 1l8t_A*
3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Length = 263
Score = 36.9 bits (85), Expect = 0.005
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 42 SPVVFCHNDLLLGNIIYDETEDKVT-FIDYEYAGVNYQAFDIANHFDEFAGVSPIDHSRY 100
+VF H DL NI + KV+ FID +G + +DIA F S +
Sbjct: 181 EELVFSHGDLGDSNIFVK--DGKVSGFIDLGRSGRADKWYDIA-----FCVRSIREDIGE 233
Query: 101 PGPEFQLSWLRTYLEEYTGSPPSPHQLA 128
++ + + G P ++
Sbjct: 234 EQ------YVELFFDLL-GIKPDWEKIK 254
Score = 27.3 bits (60), Expect = 6.1
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 179 KYLGTSPPSPQILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPH---IHPLVARN 235
+L P P++LH L+ GV + + E I L A
Sbjct: 64 LWLEGKLPVPKVLHFERHDGWSN------LLMSEADGVLCSEEYEDEQSPEKIIELYAEC 117
Query: 236 MARLHKVH 243
+ H +
Sbjct: 118 IRLFHSID 125
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural
genomics, PSI, protein structure initiative; 2.80A
{Escherichia coli} SCOP: d.144.1.6
Length = 328
Score = 34.7 bits (79), Expect = 0.036
Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 18/112 (16%)
Query: 35 TALSKTKSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEFAGVSP 94
TA + V+ H D GNI++ D F+D + A D+
Sbjct: 186 TAHWREDFTVLRLHGDCHAGNILWR---DGPMFVDLDDARNGPAVQDLWMLL-------- 234
Query: 95 IDHSRYPGPEFQLSWLRTYLEEY-TGSPPSPHQLATLHWQVQQFSPVAHCFW 145
Q L T +E Y S ++ + V + W
Sbjct: 235 -----NGDKAEQRMQLETIIEAYEEFSEFDTAEIGLIEPLRAMRL-VYYLAW 280
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer,
antibiotic resistance, transfer; HET: GDP; 1.70A
{Enterococcus gallinarum} PDB: 3tdv_A*
Length = 306
Score = 31.6 bits (71), Expect = 0.31
Identities = 20/148 (13%), Positives = 39/148 (26%), Gaps = 28/148 (18%)
Query: 13 SRFQALFPGGVSQLQSDWQYIETALSKTKSPVVFCHNDLLLGNIIY--DETEDKVT-FID 69
F L L +Q T T+ H DL + + + + +T ID
Sbjct: 159 QVFPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIID 218
Query: 70 YEYAGVNYQAFDIANHFDEFAGVSPIDHSRYPGPEFQLSWLRTYLEEYTGSPPSPHQLAT 129
+ A ++ +D ++ G F R + H
Sbjct: 219 FGDAAISDPDYDYVYLLEDC------------GELF----TRQVMAYRGEVDLDTHIRKV 262
Query: 130 LHWQVQQFSPVAHCFWTIWGLVQAEHSD 157
+ F + L++ +
Sbjct: 263 SLFVT---------FDQVSYLLEGLRAR 281
>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_A
Length = 1299
Score = 29.8 bits (66), Expect = 1.5
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 6/101 (5%)
Query: 135 QQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYASSTYQGYVLKRDKYLGTSPPSPQILHRA 194
+ + + + + + + A QG + P P +
Sbjct: 280 TAVTRLDQSYHPVTSFDPSTFNTLLQRATNLALLAVQGVQSES-----AIPAIPTMSDVR 334
Query: 195 GLAPRLYAEFDNGLVYQYVRG-VTITPDSIREPHIHPLVAR 234
RL AE D + Y + P+S P I P A
Sbjct: 335 SFVARLMAEGDPQQWFPYRVDQILYWPESPFVPPIGPFYAP 375
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 343
Score = 28.2 bits (62), Expect = 3.9
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 192 HRAGLAPR-----LYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSN 245
H +GL PR ++ ++RG+T +M L + N
Sbjct: 10 HSSGLVPRGSHMASMGRIESAFDLGFIRGMTFGFVGQHGTWGTDEARASMRALAEQPFN 68
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase,
CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo
sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A*
2wb8_A
Length = 336
Score = 27.9 bits (61), Expect = 4.8
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 30 WQYIETALSKTKSPVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNY 77
Q + +L+ ++ + F H DL GN++ +T K + Y G +
Sbjct: 168 HQ-LTASLAVAEASLRFEHRDLHWGNVLLKKTSLK--KLHYTLNGKSS 212
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.412
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,911,441
Number of extensions: 293071
Number of successful extensions: 624
Number of sequences better than 10.0: 1
Number of HSP's gapped: 598
Number of HSP's successfully gapped: 37
Length of query: 317
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 223
Effective length of database: 4,077,219
Effective search space: 909219837
Effective search space used: 909219837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)