RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8745
(317 letters)
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans
[TaxId: 6239]}
Length = 395
Score = 147 bits (371), Expect = 7e-42
Identities = 53/194 (27%), Positives = 79/194 (40%), Gaps = 37/194 (19%)
Query: 25 QLQSDWQYIETALSKTKSPVVFCHNDLLLGNIIYDET----------------------- 61
L + +++ +S +KSPV FCHNDL GNI+ +
Sbjct: 199 DLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSA 258
Query: 62 ----EDKVTFIDYEYAGVNYQAFDIANHFDEFAGVS--------PIDHSRYPGPEFQLSW 109
+ ++ ID+EYA NY+AFD ANHF E+ I +P + L +
Sbjct: 259 FNPADPRLVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEF 318
Query: 110 LRTYLEEYTGSPPSP--HQLATLHWQVQQFSPVAHCFWTIWGLVQAEHSDIEFDFFQYAS 167
YL E + + + L + F PV+H FW +WGL+Q E S + F F Y
Sbjct: 319 FLNYLREQGNTRENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGR 378
Query: 168 STYQGYVLKRDKYL 181
Y +
Sbjct: 379 DRLSLYFKHKQLLK 392
Score = 52.1 bits (124), Expect = 3e-08
Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 189 QILHRAGLAPRLYAEFDNGLVYQYVRGVTITPDSIREPHIHPLVARNMARLHKVHSNM-- 246
+L L P+LY F G + +Y+ ++ I H+ +A+ +A++H++ +
Sbjct: 99 TLLSERHLGPKLYGIFSGGRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLEVPIWK 158
Query: 247 KTPKLWSTGKHMLSLIPRTYSNPDKQERY 275
+ L + L + T + +
Sbjct: 159 EPDYLCEALQRWLKQLTGTVDAEHRFDLP 187
>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus
subtilis [TaxId: 1423]}
Length = 392
Score = 47.1 bits (111), Expect = 1e-06
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 8/109 (7%)
Query: 13 SRFQALFPGGVSQLQSDWQYIETAL----SKTKSPVVFCHNDLLLGNIIYDETEDKVTFI 68
+ F+ V +L ++ A S S H DL G+I E + I
Sbjct: 188 NDFEEELRPFVEKLWNNDSVKIEAAKLKKSFLTSAETLIHGDLHTGSIFASE--HETKVI 245
Query: 69 DYEYAGVNYQAFDIANHFDEFAGVSPIDHSRYPGPEFQLSWLRTYLEEY 117
D E+A FD+ E + E +
Sbjct: 246 DPEFAFYGPIGFDVGQFIANL--FLNALSRDGADREPLYEHVNQVWETF 292
>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa
(Kanamycin kinase) {Bacteria (Klebsiella pneumoniae)
[TaxId: 573]}
Length = 255
Score = 37.3 bits (85), Expect = 0.001
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 43 PVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEFAGVSPIDHSRYPG 102
+V H D L NI+ + FID GV + DIA + A
Sbjct: 174 DLVVTHGDACLPNIMVENGRFSG-FIDCGRLGVADRYQDIALATRDIAE----------- 221
Query: 103 PEFQLSWLRTYLEEYTGSPPSPHQLA 128
E W +L Y + P ++A
Sbjct: 222 -ELGGEWADRFLVLYGIAAPDSQRIA 246
>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside
phosphotransferase {Enterococcus faecalis [TaxId: 1351]}
Length = 263
Score = 34.6 bits (78), Expect = 0.010
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 13/86 (15%)
Query: 43 PVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEFAGVSPIDHSRYPG 102
+VF H DL NI + FID +G + +DIA G
Sbjct: 182 ELVFSHGDLGDSNIFVKD-GKVSGFIDLGRSGRADKWYDIAFCVRSIR--------EDIG 232
Query: 103 PEFQLSWLRTYLEEYTGSPPSPHQLA 128
E ++ + + G P ++
Sbjct: 233 EE---QYVELFFDLL-GIKPDWEKIK 254
>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean
(Phaseolus vulgaris), phaseolin [TaxId: 3885]}
Length = 162
Score = 29.5 bits (66), Expect = 0.36
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 7/56 (12%)
Query: 199 RLYAEFDNGLVYQYVRGVTITPDSIREPHIHP------LVARNMARLHKVHSNMKT 248
L DN L + + ++ PH + +V A + V
Sbjct: 9 NLTERTDNSLNVLISS-IEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNK 63
>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}
Length = 325
Score = 29.4 bits (65), Expect = 0.48
Identities = 18/104 (17%), Positives = 28/104 (26%), Gaps = 18/104 (17%)
Query: 43 PVVFCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEFAGVSPIDHSRYPG 102
V+ H D GNI++ D F+D + A D+ +
Sbjct: 191 TVLRLHGDCHAGNILWR---DGPMFVDLDDARNGPAVQDLWMLL----------NGDKAE 237
Query: 103 PEFQLS-WLRTYLEEYTGSPPSPHQLATLHWQVQQFSPVAHCFW 145
QL + Y E + L V + W
Sbjct: 238 QRMQLETIIEAYEEFSEFDTAEIGLIEPLRA----MRLVYYLAW 277
>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein
kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 273
Score = 26.2 bits (57), Expect = 5.0
Identities = 22/109 (20%), Positives = 34/109 (31%), Gaps = 15/109 (13%)
Query: 46 FCHNDLLLGNIIYDETEDKVTFIDYEYAGVNYQAFDIANHFDEFAG----VSP--IDHSR 99
H D+ NI+ D ++ ID+ + + +F G P I + R
Sbjct: 131 VLHRDIKDENILIDLNRGELKLIDFGSGALLKD-----TVYTDFDGTRVYSPPEWIRYHR 185
Query: 100 YPGPEF-QLSWLRTYLEEYTGSPPSPHQLATLHWQV---QQFSPVAHCF 144
Y G S + G P H + QV Q+ S
Sbjct: 186 YHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHL 234
>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean
(Glycine max), proglycinin [TaxId: 3847]}
Length = 174
Score = 25.3 bits (55), Expect = 9.3
Identities = 5/36 (13%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 216 VTITPDSIREPHIHP------LVARNMARLHKVHSN 245
++ +++ PH + A + V+ N
Sbjct: 47 GSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCN 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.412
Gapped
Lambda K H
0.267 0.0488 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,209,163
Number of extensions: 57312
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 12
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)