BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8747
(214 letters)
Database: pdbaa
65,211 sequences; 15,674,573 total letters
Searching..................................................done
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 31 TTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISE 90
+TPA ++H+LRRQ R+PLV+M+PKSLLRHP A SS +++ GT FL I + I E
Sbjct: 752 STPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT-FLPAIGE--IDE 808
Query: 91 RKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAK 150
V+++V CSGKVYYDL++ R NN D +A+VR+EQ+ PFP +++ ++ + K
Sbjct: 809 LDPKGVKRVVMCSGKVYYDLLEQRRKNNQHD-VAIVRIEQLYPFPHKAMQEVLQQFAHVK 867
Query: 151 -VQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLA 209
W QEE NQGAW Q F + + Y GRP +ASPA G H K+ ++L+
Sbjct: 868 DFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGHMSVHQKQQQDLVN 927
Query: 210 DFMTL 214
D + +
Sbjct: 928 DALNV 932
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 147 bits (371), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 31 TTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISE 90
+TPA ++H+LRRQ R+PLV+M+PKSLLRHP A SS +++ GT FL I + I E
Sbjct: 752 STPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT-FLPAIGE--IDE 808
Query: 91 RKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAK 150
V+++V CSGKVYYDL++ R NN D +A+VR+EQ+ PFP +++ ++ + K
Sbjct: 809 LDPKGVKRVVMCSGKVYYDLLEQRRKNNQHD-VAIVRIEQLYPFPHKAMQEVLQQFAHVK 867
Query: 151 -VQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLA 209
W QEE NQGAW Q F + + Y GRP +ASPA G H K+ ++L+
Sbjct: 868 DFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGYMSVHQKQQQDLVN 927
Query: 210 DFMTL 214
D + +
Sbjct: 928 DALNV 932
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 104/186 (55%), Gaps = 14/186 (7%)
Query: 31 TTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISE 90
+TPAN FH+LRR ++PL++ TPKS+LR+ A S D E ++F V+ + ++
Sbjct: 684 STPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTE-SKFRSVLEEPMYTD 742
Query: 91 RKAD--SVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPN 148
+ D V +L+ SGK+YY+L + N D +A+VR+EQ++P P + + RYPN
Sbjct: 743 GEGDRNKVTRLLLTSGKIYYELAARKAKENRED-VAIVRIEQLAPLPRRRLAETLDRYPN 801
Query: 149 AKVQ-WVQEEHKNQGAWTYVQPRFNTTV-----NGQRKMTYVGRPTAASPATGSKMQHVK 202
K + WVQEE NQGAW P F T+ + + + R ++P++GS H
Sbjct: 802 VKEKFWVQEEPANQGAW----PSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSSKVHAV 857
Query: 203 ELENLL 208
E + +L
Sbjct: 858 EQQEIL 863
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
Length = 1113
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 104/186 (55%), Gaps = 14/186 (7%)
Query: 31 TTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISE 90
+TPAN FH+LRR ++PL++ TPKS+LR+ A S D E ++F V+ + ++
Sbjct: 929 STPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTE-SKFRSVLEEPMYTD 987
Query: 91 RKAD--SVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPN 148
+ D V +L+ SGK+YY+L + N D +A+VR+EQ++P P + + RYPN
Sbjct: 988 GEGDRNKVTRLLLTSGKIYYELAARKAKENRED-VAIVRIEQLAPLPRRRLAETLDRYPN 1046
Query: 149 AKVQ-WVQEEHKNQGAWTYVQPRFNTTV-----NGQRKMTYVGRPTAASPATGSKMQHVK 202
K + WVQEE NQGAW P F T+ + + + R ++P++GS H
Sbjct: 1047 VKEKFWVQEEPANQGAW----PSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSSKVHAV 1102
Query: 203 ELENLL 208
E + +L
Sbjct: 1103 EQQEIL 1108
>pdb|4APW|A Chain A, Alp12 Filament Structure
pdb|4APW|B Chain B, Alp12 Filament Structure
pdb|4APW|C Chain C, Alp12 Filament Structure
pdb|4APW|D Chain D, Alp12 Filament Structure
pdb|4APW|E Chain E, Alp12 Filament Structure
pdb|4APW|F Chain F, Alp12 Filament Structure
pdb|4APW|G Chain G, Alp12 Filament Structure
pdb|4APW|H Chain H, Alp12 Filament Structure
pdb|4APW|I Chain I, Alp12 Filament Structure
pdb|4APW|J Chain J, Alp12 Filament Structure
pdb|4APW|K Chain K, Alp12 Filament Structure
pdb|4APW|L Chain L, Alp12 Filament Structure
pdb|4APW|M Chain M, Alp12 Filament Structure
pdb|4APW|N Chain N, Alp12 Filament Structure
pdb|4APW|O Chain O, Alp12 Filament Structure
pdb|4APW|P Chain P, Alp12 Filament Structure
Length = 329
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 31 TTPANLFHILRRQIALP--------FRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRV 82
T+ NL H L A+ + LVL P S+LR+ +AK + D I+G + V
Sbjct: 79 TSKTNLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITV 138
Query: 83 IPDD 86
DD
Sbjct: 139 KVDD 142
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 132 SPFPFDLVKKECLRYPNAKVQWVQEEHKNQG 162
+PF +DLV L++P+ VQW+ E K +G
Sbjct: 30 TPFLYDLVXTHALQWPSLTVQWLPEVTKPEG 60
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 132 SPFPFDLVKKECLRYPNAKVQWVQEEHKNQG 162
+PF +DLV L++P+ VQW+ E K +G
Sbjct: 30 TPFLYDLVMTHALQWPSLTVQWLPEVTKPEG 60
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 107 YYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTY 166
+ + +A N+N +A+ R ++ P + + Y N Q Q+ + W
Sbjct: 104 FLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQ--QDACEALKNWIK 161
Query: 167 VQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKEL 204
P++ V ++ + R + SP S ++ VKEL
Sbjct: 162 QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199
>pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
pdb|2PO0|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
pdb|2PO1|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
pdb|2PO2|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
Length = 277
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 78 EFLRVIPDDSISERKADSVEKLVFCSGK----VYYDLIKARNDNNLGD 121
E RVI D I E KA ++EK+V GK V+ D+ +D NL D
Sbjct: 108 ELARVI-DRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMD 154
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 132 SPFPFDLVKKECLRYPNAKVQWVQEEHKNQG 162
+PF +DLV L +P+ QW+ + K G
Sbjct: 32 TPFLYDLVMTHALEWPSLTAQWLPDVTKQDG 62
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 132 SPFPFDLVKKECLRYPNAKVQWVQEEHKNQG 162
+PF +DLV L +P+ QW+ + K G
Sbjct: 34 TPFLYDLVMTHALEWPSLTAQWLPDVTKQDG 64
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 132 SPFPFDLVKKECLRYPNAKVQWVQEEHKNQG 162
+PF +DLV L +P+ QW+ + K G
Sbjct: 36 TPFLYDLVMTHALEWPSLTAQWLPDVTKQDG 66
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 132 SPFPFDLVKKECLRYPNAKVQWV 154
+PF +DLV L +P+ QW+
Sbjct: 28 TPFLYDLVMTHALEWPSLTAQWL 50
Database: pdbaa
Posted date: Jul 29, 2013 4:35 PM
Number of letters in database: 15,674,573
Number of sequences in database: 65,211
Lambda K H
0.319 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,919,322
Number of Sequences: 65211
Number of extensions: 278863
Number of successful extensions: 647
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 622
Number of HSP's gapped (non-prelim): 15
length of query: 214
length of database: 15,674,573
effective HSP length: 95
effective length of query: 119
effective length of database: 9,479,528
effective search space: 1128063832
effective search space used: 1128063832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)