Query psy8747
Match_columns 214
No_of_seqs 141 out of 1049
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 18:09:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0450|consensus 100.0 3.6E-80 7.9E-85 598.6 15.3 213 2-214 789-1013(1017)
2 PRK12270 kgd alpha-ketoglutara 100.0 1.5E-78 3.2E-83 604.1 16.9 201 2-213 1026-1227(1228)
3 KOG0451|consensus 100.0 7.2E-74 1.6E-78 546.6 11.9 206 3-213 705-913 (913)
4 COG0567 SucA 2-oxoglutarate de 100.0 1.2E-70 2.6E-75 544.6 13.6 201 2-214 705-906 (906)
5 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 8.8E-65 1.9E-69 508.5 19.1 200 4-212 727-929 (929)
6 PRK09404 sucA 2-oxoglutarate d 100.0 4E-63 8.7E-68 497.1 19.3 199 4-213 725-924 (924)
7 PTZ00182 3-methyl-2-oxobutanat 99.0 1.6E-08 3.6E-13 93.4 15.7 158 23-196 172-335 (355)
8 PRK09212 pyruvate dehydrogenas 98.0 0.00021 4.4E-09 65.4 15.2 149 23-189 141-297 (327)
9 PF02779 Transket_pyr: Transke 97.4 0.00013 2.9E-09 60.5 3.7 42 23-64 137-178 (178)
10 PLN02683 pyruvate dehydrogenas 97.2 0.022 4.7E-07 53.1 15.8 155 23-195 164-329 (356)
11 CHL00144 odpB pyruvate dehydro 97.0 0.05 1.1E-06 50.0 15.9 157 23-197 141-304 (327)
12 PRK11892 pyruvate dehydrogenas 96.9 0.041 8.9E-07 53.1 15.0 152 23-192 279-438 (464)
13 cd07036 TPP_PYR_E1-PDHc-beta_l 96.7 0.0017 3.7E-08 54.3 4.1 33 24-58 135-167 (167)
14 TIGR00204 dxs 1-deoxy-D-xylulo 96.6 0.19 4.2E-06 50.0 17.6 157 23-198 435-595 (617)
15 PRK05444 1-deoxy-D-xylulose-5- 96.4 0.27 5.8E-06 48.3 17.1 154 23-197 404-558 (580)
16 PRK09627 oorA 2-oxoglutarate-a 96.1 0.027 5.8E-07 52.9 8.1 86 94-189 273-364 (375)
17 PRK08366 vorA 2-ketoisovalerat 95.9 0.049 1.1E-06 51.4 9.0 65 95-164 259-326 (390)
18 PRK12571 1-deoxy-D-xylulose-5- 95.7 0.55 1.2E-05 47.0 16.1 150 23-190 444-599 (641)
19 PLN02582 1-deoxy-D-xylulose-5- 95.5 0.25 5.4E-06 50.0 13.0 158 23-199 481-646 (677)
20 TIGR03710 OAFO_sf 2-oxoacid:ac 95.3 0.051 1.1E-06 53.3 7.3 55 95-149 463-518 (562)
21 COG0674 PorA Pyruvate:ferredox 95.1 0.1 2.2E-06 48.8 8.2 91 94-189 255-350 (365)
22 PRK12315 1-deoxy-D-xylulose-5- 95.1 0.43 9.4E-06 47.1 12.9 143 23-188 402-550 (581)
23 PLN02225 1-deoxy-D-xylulose-5- 95.0 0.52 1.1E-05 48.1 13.5 157 23-198 506-669 (701)
24 TIGR03336 IOR_alpha indolepyru 94.7 0.23 5E-06 48.9 10.0 165 18-193 121-319 (595)
25 PRK07119 2-ketoisovalerate fer 94.7 0.2 4.4E-06 46.5 9.0 132 22-162 133-309 (352)
26 PRK08659 2-oxoglutarate ferred 94.5 0.09 1.9E-06 49.3 6.3 59 95-158 273-334 (376)
27 PRK08367 porA pyruvate ferredo 94.4 0.34 7.4E-06 45.8 9.9 53 95-149 261-316 (394)
28 smart00861 Transket_pyr Transk 92.8 0.17 3.7E-06 41.1 4.4 37 23-59 132-168 (168)
29 PRK09622 porA pyruvate flavodo 92.8 0.55 1.2E-05 44.4 8.4 151 18-175 131-345 (407)
30 PLN02234 1-deoxy-D-xylulose-5- 92.6 2.2 4.7E-05 43.2 12.6 133 23-173 482-620 (641)
31 PRK13030 2-oxoacid ferredoxin 88.0 1.2 2.5E-05 48.0 6.4 71 96-175 275-352 (1159)
32 PRK09193 indolepyruvate ferred 87.4 1.3 2.8E-05 47.6 6.4 71 97-175 284-360 (1165)
33 PRK13029 2-oxoacid ferredoxin 87.4 1.2 2.7E-05 47.8 6.2 83 97-187 287-378 (1186)
34 PF02780 Transketolase_C: Tran 84.4 1.6 3.5E-05 33.8 4.1 73 96-173 10-86 (124)
35 COG0022 AcoB Pyruvate/2-oxoglu 81.8 24 0.00053 33.1 11.3 134 23-171 139-275 (324)
36 TIGR02176 pyruv_ox_red pyruvat 79.4 7.8 0.00017 41.7 8.2 67 94-164 263-332 (1165)
37 COG4231 Indolepyruvate ferredo 79.2 13 0.00029 37.7 9.3 91 97-197 248-340 (640)
38 PRK05899 transketolase; Review 75.3 39 0.00084 33.6 11.3 123 23-164 451-580 (624)
39 TIGR00232 tktlase_bact transke 69.1 38 0.00081 34.2 9.7 124 23-164 480-609 (653)
40 PLN02790 transketolase 62.0 1.2E+02 0.0026 30.6 11.7 128 23-164 477-610 (654)
41 COG2166 sufE Cysteine desulfur 51.2 12 0.00027 31.3 2.3 36 131-167 39-75 (144)
42 PRK12702 mannosyl-3-phosphogly 46.3 28 0.00061 32.4 4.1 23 98-120 36-58 (302)
43 PRK10530 pyridoxal phosphate ( 37.7 1.1E+02 0.0024 25.9 6.2 51 98-148 38-99 (272)
44 PTZ00089 transketolase; Provis 37.2 3E+02 0.0065 27.9 10.0 128 24-162 488-616 (661)
45 cd07033 TPP_PYR_DXS_TK_like Py 34.4 64 0.0014 26.1 4.0 33 24-58 124-156 (156)
46 COG3737 Uncharacterized conser 33.7 23 0.00049 29.1 1.2 49 46-105 31-79 (127)
47 KOG3350|consensus 31.0 36 0.00078 30.1 2.1 44 70-115 129-184 (217)
48 PF14237 DUF4339: Domain of un 30.0 74 0.0016 20.6 3.1 28 129-156 9-38 (45)
49 COG3769 Predicted hydrolase (H 29.9 86 0.0019 28.7 4.3 39 98-136 41-86 (274)
50 PRK12753 transketolase; Review 29.1 5.5E+02 0.012 26.2 10.4 105 23-139 486-594 (663)
51 TIGR02461 osmo_MPG_phos mannos 28.8 80 0.0017 27.1 3.9 51 98-148 33-107 (225)
52 PRK00192 mannosyl-3-phosphogly 28.3 1.3E+02 0.0029 26.0 5.3 22 98-119 39-60 (273)
53 KOG4748|consensus 27.3 41 0.00089 32.1 2.0 18 138-155 165-182 (364)
54 PF09043 Lys-AminoMut_A: D-Lys 27.1 61 0.0013 32.1 3.1 120 93-213 145-320 (509)
55 COG0075 Serine-pyruvate aminot 24.7 2.9E+02 0.0062 26.5 7.1 65 98-164 82-147 (383)
56 PRK12754 transketolase; Review 23.1 6.2E+02 0.013 26.0 9.5 104 23-138 486-593 (663)
57 TIGR00099 Cof-subfamily Cof su 22.9 2.5E+02 0.0054 23.8 5.9 50 98-147 34-93 (256)
58 cd05126 Mth938 Mth938 domain. 21.7 46 0.00099 26.4 1.0 63 47-119 16-87 (117)
59 PRK03669 mannosyl-3-phosphogly 20.1 1.4E+02 0.0031 25.8 3.9 49 98-146 42-107 (271)
No 1
>KOG0450|consensus
Probab=100.00 E-value=3.6e-80 Score=598.62 Aligned_cols=213 Identities=51% Similarity=0.869 Sum_probs=201.9
Q ss_pred CCCcccccCCCCcc-----------cccccCCCCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcc
Q psy8747 2 SIPKAHRYPTMTLR-----------DGAQRDKFPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSF 70 (214)
Q Consensus 2 ~~~~~~~~~~~~~~-----------~~~~~~~~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l 70 (214)
|--|++||+|||.+ ...|.+++||||+||||||||||+||||++++|||||||||||||||||+|.|++
T Consensus 789 SSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~ 868 (1017)
T KOG0450|consen 789 SSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSF 868 (1017)
T ss_pred ccccHHHHHHhccCCCccCCcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCH
Confidence 44689999999854 2358899999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceEcccCCCccccCcccccEEEEecccchHHHHHHHHhcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCc
Q psy8747 71 DDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAK 150 (214)
Q Consensus 71 ~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvlCSGKvyydL~~~r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~ 150 (214)
+||.+|+.||.||+|.+....++++|||||||||||||||.++|++.++.++|||+|||||+|||+++|++++++|||+|
T Consensus 869 ~ef~~g~~fq~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~~~~vAi~RvEQl~PFp~dli~~e~~~YpnaE 948 (1017)
T KOG0450|consen 869 SEFDEGTGFQRVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKERKEVGLEGDVAITRVEQLSPFPFDLIQQELNKYPNAE 948 (1017)
T ss_pred HHhccCCCCceeccccccccCChhhceEEEEecceEehhhhHHHHhcCcccceeEEEeeccCCCcHHHHHHHHHhCCCce
Confidence 99999999999999987777789999999999999999999999999977899999999999999999999999999999
Q ss_pred EEEeccCcCCCCcccchHHHHHhhhCC-CCceeEecCCCCCCCCCCCHHHHHHHHHHHHHHhhcC
Q psy8747 151 VQWVQEEHKNQGAWTYVQPRFNTTVNG-QRKMTYVGRPTAASPATGSKMQHVKELENLLADFMTL 214 (214)
Q Consensus 151 ~vW~QEEP~NmGAW~~v~~~l~~~~~~-~~~l~yvGRp~saspAtG~~~~H~~eq~~li~~Af~l 214 (214)
++||||||+|||+|.|++|||..+++. .+.+.|+||.+|||||||+...|.+||++++++||.+
T Consensus 949 ivWcQEE~~NmG~w~Yv~PRl~T~l~~~~r~v~Y~GR~Psaa~AtGnk~~Hl~eq~~~l~~a~~~ 1013 (1017)
T KOG0450|consen 949 IVWCQEEHKNMGAWDYVEPRLRTALKRLARPVKYAGRLPSAAPATGNKQTHLAEQKAFLNKAFQL 1013 (1017)
T ss_pred eeehhhhhcccCchhhcchHHHHHHHhhCCcceecccCCcccccccchhHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999974 5689999999999999999999999999999999964
No 2
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=1.5e-78 Score=604.09 Aligned_cols=201 Identities=40% Similarity=0.666 Sum_probs=191.2
Q ss_pred CCCcccccCCCCcccccccCCCCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccCCCCCceE
Q psy8747 2 SIPKAHRYPTMTLRDGAQRDKFPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLR 81 (214)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~ 81 (214)
|--|++||+|+|++ .||+||+||||||||||||||++...||||||||||||||||.|+|+++||++| +|+|
T Consensus 1026 SSaRiERfLqlcAe-------~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~vedFT~g-~F~p 1097 (1228)
T PRK12270 1026 SSARIERFLQLCAE-------GNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDVEDFTEG-KFRP 1097 (1228)
T ss_pred chHHHHHHHHhhcc-------CCeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCCHHHhccC-Ccee
Confidence 34589999999998 688999999999999999999999999999999999999999999999999975 6999
Q ss_pred cccCCCccccCcccccEEEEecccchHHHHHHHHhcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCC-cEEEeccCcCC
Q psy8747 82 VIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNA-KVQWVQEEHKN 160 (214)
Q Consensus 82 vi~d~~~~~~~~~~v~rvvlCSGKvyydL~~~r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na-~~vW~QEEP~N 160 (214)
||+|+.. .++++|+|||||||||||||+++|+|++. +||||||||||||||.++|.++|++|||+ +++||||||.|
T Consensus 1098 Vi~D~~~--~~~~~V~RVlLcSGKvYYdL~a~R~k~~~-~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~N 1174 (1228)
T PRK12270 1098 VIDDPTV--DDGAKVRRVLLCSGKLYYDLAARREKDGR-DDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPAN 1174 (1228)
T ss_pred cCCCCCC--CCccceeEEEEEcchhHHHHHHHHHhcCC-CceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCccc
Confidence 9999864 45678999999999999999999999995 78999999999999999999999999999 89999999999
Q ss_pred CCcccchHHHHHhhhCCCCceeEecCCCCCCCCCCCHHHHHHHHHHHHHHhhc
Q psy8747 161 QGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLADFMT 213 (214)
Q Consensus 161 mGAW~~v~~~l~~~~~~~~~l~yvGRp~saspAtG~~~~H~~eq~~li~~Af~ 213 (214)
||||+|+.++|...+....+++|||||++||||+|++++|+.||++||++||.
T Consensus 1175 qGaw~f~~~~l~~~l~~~~~lr~VsRpasasPAtGs~kvH~~EQ~~Ll~~Af~ 1227 (1228)
T PRK12270 1175 QGAWPFMALNLPELLPDGRRLRRVSRPASASPATGSAKVHAVEQQELLDEAFA 1227 (1228)
T ss_pred CCCchhhhhhhHhhccCCCCceEecCCcccCCCccchhhHHHHHHHHHHHHhc
Confidence 99999999999999987788999999999999999999999999999999996
No 3
>KOG0451|consensus
Probab=100.00 E-value=7.2e-74 Score=546.56 Aligned_cols=206 Identities=38% Similarity=0.720 Sum_probs=198.3
Q ss_pred CCcccccCCCC--cccccccCCCCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccCCCCCce
Q psy8747 3 IPKAHRYPTMT--LRDGAQRDKFPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFL 80 (214)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~ 80 (214)
--|.+||+||| ++++++++++||.|+||||||||||+|||||.|||||||||.+||.|||+|+|+|+++||.+||+|+
T Consensus 705 SCRiERFLQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~ 784 (913)
T KOG0451|consen 705 SCRIERFLQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFH 784 (913)
T ss_pred hhhHHHHHHHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhhhHhhcCCCcccc
Confidence 34789999997 5788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCCccccCcccccEEEEecccchHHHHHHHHhcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCC-cEEEeccCcC
Q psy8747 81 RVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNA-KVQWVQEEHK 159 (214)
Q Consensus 81 ~vi~d~~~~~~~~~~v~rvvlCSGKvyydL~~~r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na-~~vW~QEEP~ 159 (214)
+||+|. .+++++||+|||||||.||.|.++|++++..|.|||+|||.|+|||.++|+++|++|+|+ ++||.||||+
T Consensus 785 nVigd~---~~~p~kvkkvifcSGKH~y~l~k~Re~rgakd~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEpr 861 (913)
T KOG0451|consen 785 NVIGDT---IAKPEKVKKVIFCSGKHYYTLAKEREKRGAKDTVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPR 861 (913)
T ss_pred cccccc---ccChhHheEEEEecCcchhhHHHHHHhcccccceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccc
Confidence 999997 468999999999999999999999999999888899999999999999999999999999 7999999999
Q ss_pred CCCcccchHHHHHhhhCCCCceeEecCCCCCCCCCCCHHHHHHHHHHHHHHhhc
Q psy8747 160 NQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLADFMT 213 (214)
Q Consensus 160 NmGAW~~v~~~l~~~~~~~~~l~yvGRp~saspAtG~~~~H~~eq~~li~~Af~ 213 (214)
|||||+||+||+++.++ .+|+|+|||+.+.||||.+++|+.|.++||+..|+
T Consensus 862 NmGaWsFVrPRFEn~lg--~~L~~~GRpelp~pAtgIG~vH~~e~eeiva~tFa 913 (913)
T KOG0451|consen 862 NMGAWSFVRPRFENLLG--QQLHYCGRPELPTPATGIGKVHKREVEEIVAATFA 913 (913)
T ss_pred cCCcceeechHHHHHhh--hhheecCCCCCCCccccchhhhhhhHHHHHhhccC
Confidence 99999999999999997 78999999999999999999999999999998874
No 4
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.2e-70 Score=544.60 Aligned_cols=201 Identities=44% Similarity=0.758 Sum_probs=190.1
Q ss_pred CCCcccccCCCCcccccccCCCCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccCCCCCceE
Q psy8747 2 SIPKAHRYPTMTLRDGAQRDKFPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLR 81 (214)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~ 81 (214)
|.-|++||+|+|.++ |||||+|||||||||+||||+++.+||||||||||||||||.|+|+++||++| .|++
T Consensus 705 SSaRlER~LQLcaE~-------NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~~~el~~~-~F~~ 776 (906)
T COG0567 705 SSARLERFLQLCAEN-------NMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEELTEG-TFQP 776 (906)
T ss_pred ccchhHHHHHhhHHh-------CCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCchhhhchh-hhhh
Confidence 567999999999984 99999999999999999999999999999999999999999999999999998 7999
Q ss_pred cccCCCccccCcccccEEEEecccchHHHHHHHHhcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCC-cEEEeccCcCC
Q psy8747 82 VIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNA-KVQWVQEEHKN 160 (214)
Q Consensus 82 vi~d~~~~~~~~~~v~rvvlCSGKvyydL~~~r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na-~~vW~QEEP~N 160 (214)
||.|.. ..+ .+|+|||+|||||||||.+.|++++ .++|||+|||||||||.++|.++|++|+|+ +++||||||+|
T Consensus 777 vl~d~~--~~~-~~v~rvvlcSGKvyydl~~~r~~~g-~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N 852 (906)
T COG0567 777 VLEDID--ELD-PKVKRVVLCSGKVYYDLLEQREKDG-RDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKN 852 (906)
T ss_pred hhcccc--ccc-cceeeEEeeccchHHHHHHHHhhcC-CcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCc
Confidence 999963 223 3499999999999999999999988 589999999999999999999999999998 89999999999
Q ss_pred CCcccchHHHHHhhhCCCCceeEecCCCCCCCCCCCHHHHHHHHHHHHHHhhcC
Q psy8747 161 QGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLADFMTL 214 (214)
Q Consensus 161 mGAW~~v~~~l~~~~~~~~~l~yvGRp~saspAtG~~~~H~~eq~~li~~Af~l 214 (214)
||||.|+.++|..+++....++|+|||++||||+|+.+.|++||+.++++||.+
T Consensus 853 ~Gaw~~~~~~l~~~l~~~~~l~yagRp~saSpA~G~~~~h~~eq~~l~~dal~~ 906 (906)
T COG0567 853 QGAWYYIQPHLEEVLPEGDKLRYAGRPASASPAVGSMSVHQKQQEKLLEDALGV 906 (906)
T ss_pred cccHHHHHHHHHHhhcccchhcccCCCcccCcccccHHHHHHHHHHHhHhhhcC
Confidence 999999999999999987889999999999999999999999999999999964
No 5
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=8.8e-65 Score=508.48 Aligned_cols=200 Identities=43% Similarity=0.708 Sum_probs=184.2
Q ss_pred CcccccCCCCcccccccCCCCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccCCCCCceEcc
Q psy8747 4 PKAHRYPTMTLRDGAQRDKFPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVI 83 (214)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~vi 83 (214)
.++++|+|++.. .||+||+||||||||||||||++|+++||||+|+||+|||||.|+|+++||.+| .|+++|
T Consensus 727 ~~~E~~lql~~~-------~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~-~f~~~i 798 (929)
T TIGR00239 727 GRLERFLQLAAE-------QNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEG-TFQPVI 798 (929)
T ss_pred cCHHHHHHHhCC-------CCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCC-Cccccc
Confidence 477888888775 489999999999999999999999999999999999999999999999999876 599999
Q ss_pred cCCCc--cccCcccccEEEEecccchHHHHHHHHhcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCC-cEEEeccCcCC
Q psy8747 84 PDDSI--SERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNA-KVQWVQEEHKN 160 (214)
Q Consensus 84 ~d~~~--~~~~~~~v~rvvlCSGKvyydL~~~r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na-~~vW~QEEP~N 160 (214)
+|... ...++++|+|||+|||||||||.++|.+.+. .+|+|||||||||||.+.|.+.++||+|+ ++|||||||+|
T Consensus 799 ~~~~~~~~~~~~~~v~~vv~~sg~v~~~l~~~~~~~~~-~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n 877 (929)
T TIGR00239 799 GEIEESGLSLDPEGVKRLVLCSGKVYYDLHEQRRKNGQ-KDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLN 877 (929)
T ss_pred ccccccccccCccCCcEEEEECchHHHHHHHHHHhcCC-CCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCC
Confidence 87432 1235679999999999999999999987764 68999999999999999999999999998 89999999999
Q ss_pred CCcccchHHHHHhhhCCCCceeEecCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q psy8747 161 QGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLADFM 212 (214)
Q Consensus 161 mGAW~~v~~~l~~~~~~~~~l~yvGRp~saspAtG~~~~H~~eq~~li~~Af 212 (214)
||||+||+|||.+++..+.+++|||||++||||||++++|++||++||++||
T Consensus 878 ~Gaw~~v~~rl~~~l~~~~~l~y~gR~~~aspA~G~~~~H~~eq~~li~~a~ 929 (929)
T TIGR00239 878 MGAWYYSQPHLREVIPEGVSVRYAGRPASASPAVGYMSLHQKQQQDLLNDAL 929 (929)
T ss_pred CCCHHHHHHHHHHHhccCCceEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999886556899999999999999999999999999999997
No 6
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=4e-63 Score=497.08 Aligned_cols=199 Identities=46% Similarity=0.788 Sum_probs=186.2
Q ss_pred CcccccCCCCcccccccCCCCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccCCCCCceEcc
Q psy8747 4 PKAHRYPTMTLRDGAQRDKFPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVI 83 (214)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~vi 83 (214)
.++++|++++.+ .||+||+||||||||||||||++|++|||||||+||+|||+|.++|+++||++|+ |++||
T Consensus 725 ~~~E~~l~~~~~-------~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~~-f~~vi 796 (924)
T PRK09404 725 ARLERFLQLCAE-------DNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGS-FQPVI 796 (924)
T ss_pred cCHHHHHHhCCC-------CCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCCC-ceeec
Confidence 477888888775 4999999999999999999999999999999999999999999999999998875 99999
Q ss_pred cCCCccccCcccccEEEEecccchHHHHHHHHhcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCC-cEEEeccCcCCCC
Q psy8747 84 PDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNA-KVQWVQEEHKNQG 162 (214)
Q Consensus 84 ~d~~~~~~~~~~v~rvvlCSGKvyydL~~~r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na-~~vW~QEEP~NmG 162 (214)
+|.. ..++++|+|+|+||||+||||+++|++.+. ++|+|||||||||||.+.|.+.++||+|+ +++||||||+|||
T Consensus 797 ~~~~--~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~~-~~v~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G 873 (924)
T PRK09404 797 GDID--ELDPKKVKRVVLCSGKVYYDLLEARRKRGI-DDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQG 873 (924)
T ss_pred cccc--ccCccceeEEEEEcCHHHHHHHHHHHhCCC-CCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Confidence 9964 245779999999999999999999998885 58999999999999999999999999997 8999999999999
Q ss_pred cccchHHHHHhhhCCCCceeEecCCCCCCCCCCCHHHHHHHHHHHHHHhhc
Q psy8747 163 AWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLADFMT 213 (214)
Q Consensus 163 AW~~v~~~l~~~~~~~~~l~yvGRp~saspAtG~~~~H~~eq~~li~~Af~ 213 (214)
||+||+|||+++++...+++|||||++||||||++++|++||++||++||+
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~y~gR~~~aspA~G~~~~H~~e~~~~i~~a~~ 924 (924)
T PRK09404 874 AWYFIQHHLEEVLPEGQKLRYAGRPASASPAVGYMSLHKKQQEALVEDALG 924 (924)
T ss_pred cHHHHHHHHHHHhccCCeeEEECCCCcCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999975568999999999999999999999999999999985
No 7
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=98.99 E-value=1.6e-08 Score=93.39 Aligned_cols=158 Identities=15% Similarity=0.138 Sum_probs=110.7
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccc--cCCCCCceEcccCCCccccCcccccEEE
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDD--MIEGTEFLRVIPDDSISERKADSVEKLV 100 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~e--f~~g~~F~~vi~d~~~~~~~~~~v~rvv 100 (214)
-||+|+.|++|.+..++|+.=+ . ...|.+|+.||.|.|++.....-++ +.-|. . .|+. +.-+-+|
T Consensus 172 Pn~~V~~Psd~~e~~~~l~~a~-~-~~~P~~i~~p~~l~r~~~~~~~~~~~~~~~Gk-~-~vl~---------~G~di~I 238 (355)
T PTZ00182 172 PGLKVVAPSDPEDAKGLLKAAI-R-DPNPVVFFEPKLLYRESVEVVPEADYTLPLGK-A-KVVR---------EGKDVTI 238 (355)
T ss_pred CCCEEEeeCCHHHHHHHHHHHH-h-CCCcEEEEeehHHhCCCCCCCCcccccccCCc-c-eEec---------CCCCEEE
Confidence 3999999999999999999854 3 3799999999999997543211111 11111 1 1222 1235789
Q ss_pred EecccchHHHHHHHHhcC-CCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcccc-hHHHHHhhhCC-
Q psy8747 101 FCSGKVYYDLIKARNDNN-LGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTY-VQPRFNTTVNG- 177 (214)
Q Consensus 101 lCSGKvyydL~~~r~~~~-~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW~~-v~~~l~~~~~~- 177 (214)
+|+|-.+...++..++.+ ...++.+|.+-+|+|||.+.|.+.++++. -+++-||+...|.|.- |...+.+..-+
T Consensus 239 ia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~~---~IvvvEE~~~~GGlG~~Va~~l~e~~~~~ 315 (355)
T PTZ00182 239 VGYGSQVHVALKAAEELAKEGISCEVIDLRSLRPWDRETIVKSVKKTG---RCVIVHEAPPTCGIGAEIAAQIMEDCFLY 315 (355)
T ss_pred EEeCHHHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhcCC---EEEEEEeCCCCCCHHHHHHHHHHHhhhhh
Confidence 999999999988876431 12369999999999999999999998774 3566778888888854 55555443200
Q ss_pred -CCceeEecCCCCCCCCCCC
Q psy8747 178 -QRKMTYVGRPTAASPATGS 196 (214)
Q Consensus 178 -~~~l~yvGRp~saspAtG~ 196 (214)
..++.-+|-|....|..|.
T Consensus 316 l~~pv~ri~~~d~~~p~~~~ 335 (355)
T PTZ00182 316 LEAPIKRVCGADTPFPYAKN 335 (355)
T ss_pred cCCCeEEeCCCCccCCCChH
Confidence 1367778888777776654
No 8
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=98.04 E-value=0.00021 Score=65.44 Aligned_cols=149 Identities=10% Similarity=0.080 Sum_probs=100.6
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCC-CcccccCCCCCceEcccCCCccccCcccccEEEE
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAK-SSFDDMIEGTEFLRVIPDDSISERKADSVEKLVF 101 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~-S~l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvl 101 (214)
-||+|+.|++|.....+|+.=+ +. ..|.+|+.||.++....-. .....|.-|. -.|+.+ .-+-+|+
T Consensus 141 P~l~V~~P~d~~e~~~~l~~a~-~~-~~Pv~i~~~~~~~~~~~~~~~~~~~~~~Gk--~~vl~~---------G~di~iv 207 (327)
T PRK09212 141 PGLKVVAPYFAADCKGLLKTAI-RD-PNPVIFLENEILYGHSHEVPEEEESIPIGK--AAILRE---------GSDVTIV 207 (327)
T ss_pred CCCEEEeeCCHHHHHHHHHHHH-hC-CCcEEEEEchhhcCCCCCCCCCCccccCCe--eEEEEe---------CCCEEEE
Confidence 3999999999999999999755 43 7899999999877632111 1111232221 122322 1236899
Q ss_pred ecccchHHHHHHHHh---cCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcc-cchHHHHHhhhC-
Q psy8747 102 CSGKVYYDLIKARND---NNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAW-TYVQPRFNTTVN- 176 (214)
Q Consensus 102 CSGKvyydL~~~r~~---~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW-~~v~~~l~~~~~- 176 (214)
|.|-.....++..+. .+ -++.+|-+=+|+|||.+.|.+.++++.. +.+=||.--.|.+ .-+...+.+...
T Consensus 208 a~G~~~~~a~eAa~~L~~~G--i~v~vi~~~~l~Pld~~~i~~~~~~~~~---vv~vEe~~~~gGlg~~la~~l~~~~~~ 282 (327)
T PRK09212 208 TFSIQVKLALEAAELLEKEG--ISVEVIDLRTLRPLDTETIIESVKKTNR---LVVVEEGWPFAGVGAEIAALIMKEAFD 282 (327)
T ss_pred EccHHHHHHHHHHHHHHhcC--CcEEEEEEecCCCCCHHHHHHHHHhCCe---EEEEcCCCCCCCHHHHHHHHHHHhCcc
Confidence 999999988777654 35 3699999999999999999999987643 4466776666666 345555544311
Q ss_pred --CCCceeEecCCCC
Q psy8747 177 --GQRKMTYVGRPTA 189 (214)
Q Consensus 177 --~~~~l~yvGRp~s 189 (214)
...-++|.|++..
T Consensus 283 ~~~~~i~r~~~~~~~ 297 (327)
T PRK09212 283 YLDAPVERVTGKDVP 297 (327)
T ss_pred ccCCCeEEEcCCCcc
Confidence 1234677787754
No 9
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=97.43 E-value=0.00013 Score=60.50 Aligned_cols=42 Identities=24% Similarity=0.258 Sum_probs=38.5
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCC
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHP 64 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~ 64 (214)
-||+|+.||||+++..+||..+.++.+.|.+|+.||++++||
T Consensus 137 Pg~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r~~~~~~ 178 (178)
T PF02779_consen 137 PGMKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPRGLYPHQ 178 (178)
T ss_dssp TTEEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEESSEES-T
T ss_pred cccccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeHHhCCCC
Confidence 399999999999999999999999999999999999999997
No 10
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=97.19 E-value=0.022 Score=53.07 Aligned_cols=155 Identities=12% Similarity=0.096 Sum_probs=102.6
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCc--c---cccCCCCCceEcccCCCccccCccccc
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSS--F---DDMIEGTEFLRVIPDDSISERKADSVE 97 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~--l---~ef~~g~~F~~vi~d~~~~~~~~~~v~ 97 (214)
-||+|+.|+++...-.+|+.=+ +...|.+|.-+|.+.+...-... . ..+.-|. . .++.+. + +
T Consensus 164 Pnl~V~~Pad~~e~~~~l~~a~--~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk-~-~v~r~G-------~--d 230 (356)
T PLN02683 164 PGLKVLAPYSSEDARGLLKAAI--RDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGK-A-KIEREG-------K--D 230 (356)
T ss_pred CCCEEEEeCCHHHHHHHHHHHH--hCCCcEEEEEehhhccCCCCCCCCCCCccccccCCe-e-EEEEcC-------C--C
Confidence 4999999999999999998644 34689999888887764321111 0 1111121 1 223221 2 3
Q ss_pred EEEEecccchHHHHHHHH---hcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcc-cchHHHHHh
Q psy8747 98 KLVFCSGKVYYDLIKARN---DNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAW-TYVQPRFNT 173 (214)
Q Consensus 98 rvvlCSGKvyydL~~~r~---~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW-~~v~~~l~~ 173 (214)
-.|+++|-...+.++.-+ +.++ ++.+|-+=.|.||+.+.|.+.++++.. +.+=||..-.|.| +.|...+.+
T Consensus 231 vtIia~G~~v~~Al~Aa~~L~~~GI--~v~VId~~~ikPlD~~~l~~~~~~t~~---vvtvEE~~~~GGlGs~Va~~l~e 305 (356)
T PLN02683 231 VTIVAFSKMVGYALKAAEILAKEGI--SAEVINLRSIRPLDRDTINASVRKTNR---LVTVEEGWPQHGVGAEICASVVE 305 (356)
T ss_pred EEEEEccHHHHHHHHHHHHHHhcCC--CEEEEECCCCCccCHHHHHHHHhhcCe---EEEEeCCCcCCCHHHHHHHHHHH
Confidence 589999998888776554 3454 699999999999999999999998753 4566676656665 445555544
Q ss_pred hh-C-CCCceeEecCCCCCCCCCC
Q psy8747 174 TV-N-GQRKMTYVGRPTAASPATG 195 (214)
Q Consensus 174 ~~-~-~~~~l~yvGRp~saspAtG 195 (214)
.. . ...++.-+|-|..+.|...
T Consensus 306 ~~f~~~~~~v~rlg~~d~~~p~~~ 329 (356)
T PLN02683 306 ESFDYLDAPVERIAGADVPMPYAA 329 (356)
T ss_pred hchhccCCCeEEeccCCcCCCccH
Confidence 31 0 0136777888776666443
No 11
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=96.97 E-value=0.05 Score=49.98 Aligned_cols=157 Identities=11% Similarity=0.142 Sum_probs=104.3
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcc-cccCCCCCceEcccCCCccccCcccccEEEE
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSF-DDMIEGTEFLRVIPDDSISERKADSVEKLVF 101 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l-~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvl 101 (214)
-||+|+.||+|.....+|++ +.+ ...|.+|.=||.|.|.+.....- ..|.-|. -.|+.+ .-+-.|+
T Consensus 141 Pgl~V~~Psd~~d~~~~l~~-a~~-~~~Pv~ire~~~l~~~~~~v~~~~~~~~~Gk--~~v~~~---------G~ditii 207 (327)
T CHL00144 141 PGLQIVACSTPYNAKGLLKS-AIR-SNNPVIFFEHVLLYNLKEEIPDNEYLLPLEK--AEVVRP---------GNDITIL 207 (327)
T ss_pred CCCEEEEeCCHHHHHHHHHH-HHh-CCCcEEEEEcHHhcCCCCCCCCCCccccCCe--eEEEEc---------CCCEEEE
Confidence 49999999999999999965 554 46899999899988754322211 1121121 122322 1235788
Q ss_pred ecccchHHHHHHHH---hcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcc-cchHHHHHhhhC-
Q psy8747 102 CSGKVYYDLIKARN---DNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAW-TYVQPRFNTTVN- 176 (214)
Q Consensus 102 CSGKvyydL~~~r~---~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW-~~v~~~l~~~~~- 176 (214)
++|-..++-++.-+ +.++ ++-+|-+=.|.||+.+.|.+.+++... +++=||..=.|.+ +.|...+.+..-
T Consensus 208 a~G~~v~~al~Aa~~L~~~Gi--~~~VId~~~ikPlD~~~i~~~~~~t~~---vv~vEE~~~~gGlG~~va~~l~e~~f~ 282 (327)
T CHL00144 208 TYSRMRHHVLQAVKVLVEKGY--DPEIIDLISLKPLDLGTISKSVKKTHK---VLIVEECMKTGGIGAELIAQINEHLFD 282 (327)
T ss_pred EccHHHHHHHHHHHHHHhcCC--CEEEEecCcCCCCCHHHHHHHHHhhCc---EEEEECCCCCCCHHHHHHHHHHHhchh
Confidence 99998887777654 3454 699999999999999999999998844 3445666555555 456666644310
Q ss_pred -CCCceeEecCCCCCCCCCCCH
Q psy8747 177 -GQRKMTYVGRPTAASPATGSK 197 (214)
Q Consensus 177 -~~~~l~yvGRp~saspAtG~~ 197 (214)
...++..+|-|....|..|..
T Consensus 283 ~~~~pv~rl~~~d~~~~~~~~~ 304 (327)
T CHL00144 283 ELDAPIVRLSSQDVPTPYNGPL 304 (327)
T ss_pred hcCCCeEEEccCCCcCCCCccH
Confidence 113677788777766655543
No 12
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=96.87 E-value=0.041 Score=53.15 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=102.7
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccC--CCCCceEcccCCCccccCcccccEEE
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMI--EGTEFLRVIPDDSISERKADSVEKLV 100 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~--~g~~F~~vi~d~~~~~~~~~~v~rvv 100 (214)
-||+|+.|+||+.+.-+|+.=+ +...|.+++.+|.++........++++. -|. . .|+.+ .-+-.|
T Consensus 279 Pgl~V~~P~d~~d~~~ll~~ai--~~~~Pv~ile~~~ry~~~~~vp~~~~~~~~~Gk-a-~v~r~---------G~DvtI 345 (464)
T PRK11892 279 PGLKVVAPYSAADAKGLLKAAI--RDPNPVIFLENEILYGQSFDVPKLDDFVLPIGK-A-RIHRE---------GKDVTI 345 (464)
T ss_pred CCCEEEEeCCHHHHHHHHHHHh--hCCCcEEEEechhhcCCCCCCCCcCCccccCce-E-EEEEc---------CCCEEE
Confidence 3999999999999999998755 3468999999998876542223333331 121 1 22322 113678
Q ss_pred EecccchHHHHHHHHh---cCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcc-cchHHHHHhhhC
Q psy8747 101 FCSGKVYYDLIKARND---NNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAW-TYVQPRFNTTVN 176 (214)
Q Consensus 101 lCSGKvyydL~~~r~~---~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW-~~v~~~l~~~~~ 176 (214)
+++|-....-++..++ .|+ ++-+|-+=.|.||+.+.|.+.+++... +.+=||.--.|.| +.|...+.+..-
T Consensus 346 va~G~~v~~Al~Aa~~L~~~GI--~~~VIdl~tlkPlD~~~i~~sv~kt~~---vvtvEE~~~~gGlG~~va~~l~e~~f 420 (464)
T PRK11892 346 VSFSIGMTYALKAAEELAKEGI--DAEVIDLRTIRPMDTETIVESVKKTNR---LVTVEEGWPQSGVGAEIAARVMEQAF 420 (464)
T ss_pred EEccHHHHHHHHHHHHHHhcCC--CEEEEECCCCCcCCHHHHHHHHHhcCe---EEEEeCCCcCCcHHHHHHHHHHHhCc
Confidence 9999877776666543 454 699999999999999999999998754 3455677766666 345555544310
Q ss_pred --CCCceeEecCCCCCCC
Q psy8747 177 --GQRKMTYVGRPTAASP 192 (214)
Q Consensus 177 --~~~~l~yvGRp~sasp 192 (214)
...++..+|-+....|
T Consensus 421 ~~l~~pv~ri~~~d~~~~ 438 (464)
T PRK11892 421 DYLDAPVLRVTGKDVPMP 438 (464)
T ss_pred cccCCCeEEeccCCccCC
Confidence 0136777887776555
No 13
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=96.75 E-value=0.0017 Score=54.28 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=30.9
Q ss_pred CCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCc
Q psy8747 24 PPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPK 58 (214)
Q Consensus 24 NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPK 58 (214)
||.|+.||+|.+++++||..+..+ .|.|+++||
T Consensus 135 g~~V~~Psd~~e~~~~l~~~~~~~--~P~~~~e~k 167 (167)
T cd07036 135 GLKVVAPSTPYDAKGLLKAAIRDD--DPVIFLEHK 167 (167)
T ss_pred CCEEEeeCCHHHHHHHHHHHHhCC--CcEEEEecC
Confidence 999999999999999999999644 899999998
No 14
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=96.56 E-value=0.19 Score=49.95 Aligned_cols=157 Identities=14% Similarity=0.125 Sum_probs=103.1
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccCCCCCceEcccCCCccccCcccccEEEEe
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFC 102 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvlC 102 (214)
-||.|+.|++|.....+|+.=+ +.-..|.+|.-||.....-........|..|+ .+ |+.+. + +-.|++
T Consensus 435 Pgl~V~~Psd~~e~~~~l~~a~-~~~~~Pv~ir~~r~~~~~~~~~~~~~~~~~Gk-~~-vlr~G-------~--dvtIva 502 (617)
T TIGR00204 435 PNMVIMAPSDENELRQMLYTGY-HYDDGPIAVRYPRGNAVGVELTPEPEKLPIGK-SE-VLRKG-------E--KILILG 502 (617)
T ss_pred CCcEEEeeCCHHHHHHHHHHHH-hCCCCCEEEEEccCCcCCcccCCccccccCCc-eE-EEEcC-------C--CEEEEE
Confidence 4999999999999999998754 43347999999987552111111112232232 22 33221 1 348899
Q ss_pred cccchHHHHHHHH---hcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCccc-chHHHHHhhhCCC
Q psy8747 103 SGKVYYDLIKARN---DNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWT-YVQPRFNTTVNGQ 178 (214)
Q Consensus 103 SGKvyydL~~~r~---~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW~-~v~~~l~~~~~~~ 178 (214)
+|-..++.++..+ +.++ ++-+|-+=.|.||+.+.|.+.++++. .+++=||.--.|.|. -+...+.+.. -.
T Consensus 503 ~G~~v~~al~Aa~~L~~~gi--~~~VId~~~lkPlD~e~i~~~~~k~~---~vvtvEE~~~~GGlGs~v~~~l~~~~-~~ 576 (617)
T TIGR00204 503 FGTLVPEALEVAESLNEKGI--EATVVDARFVKPLDEELILEIAASHE---KLVTVEENAIMGGAGSAVLEFLMDQN-KL 576 (617)
T ss_pred cCHHHHHHHHHHHHHHhcCC--CEEEEecCcCCcCCHHHHHHHHhhcC---eEEEEECCCCccChHHHHHHHHHhcC-CC
Confidence 9998888877654 3353 69999999999999999999997764 456677777777664 4555554431 11
Q ss_pred CceeEecCCCCCCCCCCCHH
Q psy8747 179 RKMTYVGRPTAASPATGSKM 198 (214)
Q Consensus 179 ~~l~yvGRp~saspAtG~~~ 198 (214)
.++..+|-|..-.+ .|...
T Consensus 577 ~~v~~ig~~d~~~~-~g~~~ 595 (617)
T TIGR00204 577 VPVKRLGIPDFFIP-HGTQE 595 (617)
T ss_pred CCeEEEeCCCcCcC-CCCHH
Confidence 35777787765554 45543
No 15
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=96.37 E-value=0.27 Score=48.29 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=103.4
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccCCCCCceEcccCCCccccCcccccEEEEe
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFC 102 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvlC 102 (214)
-||.|+.|++|....-+|+.=+.. -..|-+|..||.+...-. .....+|.-|+ .+ |+.+ + + +-.|++
T Consensus 404 P~l~V~~Psd~~e~~~~l~~a~~~-~~~P~~ir~~r~~~~~~~-~~~~~~~~~Gk-~~-vl~~-G------~--dvtIia 470 (580)
T PRK05444 404 PNMVIMAPSDENELRQMLYTALAY-DDGPIAIRYPRGNGVGVE-LPELEPLPIGK-GE-VLRE-G------E--DVAILA 470 (580)
T ss_pred CCCEEEeeCCHHHHHHHHHHHHhC-CCCcEEEEecCCCCCCCC-CCCcccccCCc-eE-EEEc-C------C--CEEEEE
Confidence 499999999999999999986543 368999999998764211 11122333332 22 2222 1 1 358999
Q ss_pred cccchHHHHHHHHhcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcc-cchHHHHHhhhCCCCce
Q psy8747 103 SGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAW-TYVQPRFNTTVNGQRKM 181 (214)
Q Consensus 103 SGKvyydL~~~r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW-~~v~~~l~~~~~~~~~l 181 (214)
+|-..+..++..++.. ++-+|-+=.+.||..+.|.+.+++.. .+.+=||..=.|.| ..+...+.+..- ..++
T Consensus 471 ~G~~v~~al~Aa~~L~---~~~VId~~~i~p~D~~~i~~~~~~~~---~vv~vEe~~~~gG~g~~va~~l~~~~~-~~~v 543 (580)
T PRK05444 471 FGTMLAEALKAAERLA---SATVVDARFVKPLDEELLLELAAKHD---LVVTVEEGAIMGGFGSAVLEFLADHGL-DVPV 543 (580)
T ss_pred ccHHHHHHHHHHHHhC---CCEEEEeCcCCccCHHHHHHHHhcCC---eEEEEECCCCCCCHHHHHHHHHHhhcC-CCCE
Confidence 9999999888877654 68999999999999999999998763 34566776666666 566666655310 2356
Q ss_pred eEecCCCCCCCCCCCH
Q psy8747 182 TYVGRPTAASPATGSK 197 (214)
Q Consensus 182 ~yvGRp~saspAtG~~ 197 (214)
..+|-|..-.+ .|..
T Consensus 544 ~~ig~~d~f~~-~g~~ 558 (580)
T PRK05444 544 LNLGLPDEFID-HGSR 558 (580)
T ss_pred EEEecCCcCCC-CCCH
Confidence 77776554333 4443
No 16
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=96.06 E-value=0.027 Score=52.92 Aligned_cols=86 Identities=21% Similarity=0.221 Sum_probs=58.4
Q ss_pred ccccEEEEecccchHHHHHHHHh---cCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcccchHHH
Q psy8747 94 DSVEKLVFCSGKVYYDLIKARND---NNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTYVQPR 170 (214)
Q Consensus 94 ~~v~rvvlCSGKvyydL~~~r~~---~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW~~v~~~ 170 (214)
++.+.+|+|.|-.+..+.+.-+. .| .+|.++|+=.+||||.++|.+.|+++..+ -|=| +|+| + +..-
T Consensus 273 ~dAd~~IV~~GSt~~~~keAv~~lr~~G--~kvg~l~~~~~~PfP~~~i~~~l~~~k~v---iVvE--~n~G-q--l~~~ 342 (375)
T PRK09627 273 DDAEILIIAYGSVSLSAKEAIKRLREEG--IKVGLFRPITLWPSPAKKLKEIGDKFEKI---LVIE--LNMG-Q--YLEE 342 (375)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHhcC--CeEEEEEeCeEECCCHHHHHHHHhcCCEE---EEEc--CChH-H--HHHH
Confidence 35678999999998887776554 34 46999999999999999999999976553 2334 4774 3 3333
Q ss_pred HHhhhCC---CCceeEecCCCC
Q psy8747 171 FNTTVNG---QRKMTYVGRPTA 189 (214)
Q Consensus 171 l~~~~~~---~~~l~yvGRp~s 189 (214)
++..+.. ..-..|-|||-.
T Consensus 343 v~~~~~~~~~~~i~~~~G~~~~ 364 (375)
T PRK09627 343 IERVMQRDDFHFLGKANGRPIS 364 (375)
T ss_pred HHHHhCCCCceEEeeeCCCcCC
Confidence 3333321 122456677654
No 17
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=95.87 E-value=0.049 Score=51.43 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=48.3
Q ss_pred cccEEEEecccchHHHHHHHHh---cCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcc
Q psy8747 95 SVEKLVFCSGKVYYDLIKARND---NNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAW 164 (214)
Q Consensus 95 ~v~rvvlCSGKvyydL~~~r~~---~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW 164 (214)
+.+.+|+|+|-.+..+.+.-+. .| .+|.++||=+++|||.++|.+.|++.+ .|=|=|+-..+|..
T Consensus 259 dAe~~iV~~Gs~~~~~~eav~~lr~~G--~kvg~l~i~~~~PfP~~~i~~~l~~~k---~ViVvE~n~~~Gq~ 326 (390)
T PRK08366 259 DADFVFMGMGSLMGTVKEAVDLLRKEG--YKVGYAKVRWFRPFPKEELYEIAESVK---GIAVLDRNFSFGQE 326 (390)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHhcC--CceeeEEEeeecCCCHHHHHHHHhcCC---EEEEEeCCCCCCcc
Confidence 4568999999998877766544 35 369999999999999999999887654 33445555434543
No 18
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=95.71 E-value=0.55 Score=47.02 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=93.6
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccCCCCCceEcccCCCccccCcccccEEEEe
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFC 102 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvlC 102 (214)
-||+|+.|++|.....+|+.=+ ..-..|.+|..||..........+-..+.-|. -.++.+. -+-.|++
T Consensus 444 Pnl~V~~Psd~~e~~~~l~~a~-~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~gk--~~vlr~G---------~ditIva 511 (641)
T PRK12571 444 PNMTVMAPRDEAELRHMLRTAA-AHDDGPIAVRFPRGEGVGVEIPAEGTILGIGK--GRVPREG---------PDVAILS 511 (641)
T ss_pred CCCEEEeeCCHHHHHHHHHHHH-hCCCCcEEEEEecCcCCccccCCCCccccCce--eEEEecC---------CCEEEEE
Confidence 4999999999999999997654 32368999999987542111100001121121 1233321 1358999
Q ss_pred cccchHHHHHHHHh---cCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcc-cchHHHHHhhhC--
Q psy8747 103 SGKVYYDLIKARND---NNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAW-TYVQPRFNTTVN-- 176 (214)
Q Consensus 103 SGKvyydL~~~r~~---~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW-~~v~~~l~~~~~-- 176 (214)
+|-..+..++..++ .++ ++-+|-+=.|.||+.+-|.+.+++. .+ .+=||.-..|.| ..+...+.+..-
T Consensus 512 ~G~~v~~aleAa~~L~~~Gi--~v~VId~~~lkPlD~~~i~sv~k~~---~v-vvveE~~~~gG~g~~v~~~l~~~~~~~ 585 (641)
T PRK12571 512 VGAHLHECLDAADLLEAEGI--SVTVADPRFVKPLDEALTDLLVRHH---IV-VIVEEQGAMGGFGAHVLHHLADTGLLD 585 (641)
T ss_pred ecHHHHHHHHHHHHHHhcCC--CEEEEEcCcCCCcCHHHHHHHhhhC---CE-EEEECCCCCCCHHHHHHHHHHhcCccc
Confidence 99988888776643 354 6889999899999998886666433 33 455666566776 567666654310
Q ss_pred CCCceeEecCCCCC
Q psy8747 177 GQRKMTYVGRPTAA 190 (214)
Q Consensus 177 ~~~~l~yvGRp~sa 190 (214)
...++..+|-|..-
T Consensus 586 l~~~v~~ig~~d~f 599 (641)
T PRK12571 586 GGLKLRTLGLPDRF 599 (641)
T ss_pred cCCCeEEEecCCcC
Confidence 02356667765443
No 19
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=95.53 E-value=0.25 Score=50.03 Aligned_cols=158 Identities=16% Similarity=0.135 Sum_probs=99.5
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCc--ccccCCCCCceEcccCCCccccCcccccEEE
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSS--FDDMIEGTEFLRVIPDDSISERKADSVEKLV 100 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~--l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvv 100 (214)
-||.|+.|+++..+..+|+.=+.. -..|.+|..||........... -..+.-|. . .|+.+. + +-.|
T Consensus 481 Pnl~V~~Psd~~E~~~~l~~al~~-~~gPv~IR~pr~~~~~~~~~~~~~~~~~~iGk-~-~vlr~G-------~--dvtI 548 (677)
T PLN02582 481 PNMVVMAPSDEAELFHMVATAAAI-DDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGK-G-RILLEG-------E--RVAL 548 (677)
T ss_pred CCCEEEeeCCHHHHHHHHHHHHhC-CCCCEEEEEecCCCCCcccCCcccccccccCc-e-EEEEeC-------C--CEEE
Confidence 499999999999999999776642 2479999999875211000000 01121121 1 233321 1 3579
Q ss_pred EecccchHHHHHHHHh---cCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcc-cchHHHHHhhhC
Q psy8747 101 FCSGKVYYDLIKARND---NNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAW-TYVQPRFNTTVN 176 (214)
Q Consensus 101 lCSGKvyydL~~~r~~---~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW-~~v~~~l~~~~~ 176 (214)
+++|...+.-++..+. .++ ++-+|-+=-|.||+.+.|.+.++++ .++.+-||..- |.| +.|...+.+.-.
T Consensus 549 va~G~~v~~Al~Aa~~L~~~GI--~~~VId~~~lkPlD~~~i~~~~k~~---~~vVtvEe~~~-GG~Gs~va~~l~~~~~ 622 (677)
T PLN02582 549 LGYGTAVQSCLAAASLLERHGL--SATVADARFCKPLDRALIRSLAKSH---EVLITVEEGSI-GGFGSHVAQFMALDGL 622 (677)
T ss_pred EeecHHHHHHHHHHHHHHhcCC--CEEEEEcCcCCCCCHHHHHHHhhhC---CEEEEECCCCC-CcHHHHHHHHHHhcCC
Confidence 9999998888776643 354 6999999999999999887776654 46788899877 777 556666644310
Q ss_pred --CCCceeEecCCCCCCCCCCCHHH
Q psy8747 177 --GQRKMTYVGRPTAASPATGSKMQ 199 (214)
Q Consensus 177 --~~~~l~yvGRp~saspAtG~~~~ 199 (214)
...++..+|=|..=.. .|....
T Consensus 623 ~~~~~~v~~~Gi~d~F~~-~G~~~~ 646 (677)
T PLN02582 623 LDGKLKWRPLVLPDRYID-HGAPAD 646 (677)
T ss_pred ccCCceeEEecCCCcccC-cCCHHH
Confidence 0124555565554332 555443
No 20
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=95.34 E-value=0.051 Score=53.32 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=44.3
Q ss_pred cccEEEEecccchHHHHHHHHhcC-CCCceEEEEeeccCCCcHHHHHHHHhcCCCC
Q psy8747 95 SVEKLVFCSGKVYYDLIKARNDNN-LGDKIAVVRVEQISPFPFDLVKKECLRYPNA 149 (214)
Q Consensus 95 ~v~rvvlCSGKvyydL~~~r~~~~-~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na 149 (214)
+.+.+|+|.|-.|-.+.+..+..+ ...+|.++|+-.++|||.++|.+.|+++..+
T Consensus 463 da~~~iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v 518 (562)
T TIGR03710 463 DADVLVIGWGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKV 518 (562)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEE
Confidence 456899999999988877766531 1247999999999999999999999876543
No 21
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=95.08 E-value=0.1 Score=48.83 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=59.1
Q ss_pred ccccEEEEecccchHHHHHH----HHhcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCc-ccchH
Q psy8747 94 DSVEKLVFCSGKVYYDLIKA----RNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGA-WTYVQ 168 (214)
Q Consensus 94 ~~v~rvvlCSGKvyydL~~~----r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGA-W~~v~ 168 (214)
+..+.||+|.|...-...++ +++.+ .+|+++|+=.|+|||.++|.+.|.+-. +..|=.+| .|.|. |.-+.
T Consensus 255 ~DAe~viV~~Gss~~~~~~a~~~~~~~~g--~kvg~l~vr~~rPFp~~~i~~~l~~~~-~~~Vl~~e--~~~g~~~~~l~ 329 (365)
T COG0674 255 EDAEIVIVAMGSSKGSTAEAVVDLLRDKG--EKVGLLKVRTLRPFPAEEIREVLPKTN-AVVVLDVE--ISLGGLAEPLY 329 (365)
T ss_pred CCcCEEEEEeccchHhHHHHHHHHHHhcC--ceEEEEEEEEeCCCCHHHHHHHhcccc-eeEEEEEc--cCCccchhhHH
Confidence 56788999999777766665 33334 269999999999999999999998876 54444554 46564 32222
Q ss_pred HHHHhhhCCCCceeEecCCCC
Q psy8747 169 PRFNTTVNGQRKMTYVGRPTA 189 (214)
Q Consensus 169 ~~l~~~~~~~~~l~yvGRp~s 189 (214)
......+..+....+-||+-.
T Consensus 330 ~~~~~~~~~~~~~~~~g~~~~ 350 (365)
T COG0674 330 LEVLAALYVESRYKLGGRDFT 350 (365)
T ss_pred HHhhcceeeceeeccCCccCC
Confidence 222222111234566677653
No 22
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=95.07 E-value=0.43 Score=47.10 Aligned_cols=143 Identities=13% Similarity=0.119 Sum_probs=96.9
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccCCCCCceE-cccCCCccccCcccccEEEE
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLR-VIPDDSISERKADSVEKLVF 101 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~-vi~d~~~~~~~~~~v~rvvl 101 (214)
-||.|+.|++|...-++|+.= ...-..|.+|..||...+...- +.++|..+ +. |+.+. + +-.|+
T Consensus 402 Pnl~V~~P~d~~e~~~~l~~a-~~~~~gP~~ir~~r~~~~~~~~--~~~~~~~~---k~~v~~~g-------~--dvtii 466 (581)
T PRK12315 402 PNLVYLAPTTKEELIAMLEWA-LTQHEHPVAIRVPEHGVESGPT--VDTDYSTL---KYEVTKAG-------E--KVAIL 466 (581)
T ss_pred CCCEEEecCCHHHHHHHHHHH-HhCCCCcEEEEEcCCccCCCCC--CccCcccc---eEEEEecC-------C--CEEEE
Confidence 499999999999999999764 4433579999999998765321 11344332 22 23221 1 35899
Q ss_pred ecccchHHHHHHHHhc----CCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCccc-chHHHHHhhhC
Q psy8747 102 CSGKVYYDLIKARNDN----NLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWT-YVQPRFNTTVN 176 (214)
Q Consensus 102 CSGKvyydL~~~r~~~----~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW~-~v~~~l~~~~~ 176 (214)
|+|-.-+..++..++. ++ ++-+|-+=-|.||..+.+.+..+++ ..+.+-||.-=.|.|. .+...+.+.
T Consensus 467 a~G~~v~~Al~Aa~~L~~~~gi--~~~Vid~~~ikPlD~~~i~~~~~~~---~~vvtvEe~~~~GG~gs~v~~~l~~~-- 539 (581)
T PRK12315 467 ALGDFYELGEKVAKKLKEELGI--DATLINPKFITGLDEELLEKLKEDH---ELVVTLEDGILDGGFGEKIARYYGNS-- 539 (581)
T ss_pred EEchHHHHHHHHHHHHhhhcCC--CEEEEecCcCCCCCHHHHHHHHhhC---CEEEEEcCCCcCCCHHHHHHHHHHcC--
Confidence 9999888777766543 43 6999999999999999887766443 4667789987788883 344444331
Q ss_pred CCCceeEecCCC
Q psy8747 177 GQRKMTYVGRPT 188 (214)
Q Consensus 177 ~~~~l~yvGRp~ 188 (214)
..++..+|=|.
T Consensus 540 -~~~~~~~gi~d 550 (581)
T PRK12315 540 -DMKVLNYGAKK 550 (581)
T ss_pred -CCeEEEecCCC
Confidence 23566666544
No 23
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=95.03 E-value=0.52 Score=48.05 Aligned_cols=157 Identities=14% Similarity=0.138 Sum_probs=103.1
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccC-CCCCCcccccCCCCCceEcccCCCccccCcccccEEEE
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRH-PEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVF 101 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~-~~a~S~l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvl 101 (214)
-||.|+.|+++..+.++|+.-+. ....|.+|.-||..... +.....-..|.-|. -.|+.+. -+-.|+
T Consensus 506 Pnm~V~aPsD~~El~~mL~~A~~-~~~gPv~IR~pRg~~~~~~~~~~~~~~~~iGK--~~vlreG---------~dvtIi 573 (701)
T PLN02225 506 PNMIAMAPADEDELVNMVATAAY-VTDRPVCFRFPRGSIVNMNYLVPTGLPIEIGR--GRVLVEG---------QDVALL 573 (701)
T ss_pred CCCEEEeeCCHHHHHHHHHHHHh-cCCCCEEEEecccccCCCCcCCCCCccccCcc--eEEEEeC---------CCEEEE
Confidence 39999999999999999987554 34579999999985432 11111111222221 1244321 125789
Q ss_pred ecccchHHHHHHHHh---cCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCccc-chHHHHHhhh--
Q psy8747 102 CSGKVYYDLIKARND---NNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWT-YVQPRFNTTV-- 175 (214)
Q Consensus 102 CSGKvyydL~~~r~~---~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW~-~v~~~l~~~~-- 175 (214)
++|...+..++..++ .++ ++.+|-+=-+.|++.+.|.+.++++. .+.+-||.-- |.+. -|...+.+.-
T Consensus 574 a~G~mv~~Al~AA~~L~~~GI--~vtVIdlr~ikPLD~e~I~~~~~k~~---~vVTvEE~~~-GG~Gs~Va~~l~~~~~~ 647 (701)
T PLN02225 574 GYGAMVQNCLHAHSLLSKLGL--NVTVADARFCKPLDIKLVRDLCQNHK---FLITVEEGCV-GGFGSHVAQFIALDGQL 647 (701)
T ss_pred eccHHHHHHHHHHHHHHhcCC--CEEEEecCCCCCCCHHHHHHHHhhcC---eEEEEcCCCC-CchHHHHHHHHHhcCCC
Confidence 999999988877654 353 69999999999999999999998874 4566778764 6653 3555554421
Q ss_pred CCCCceeEecCCCCCCCCCCCHH
Q psy8747 176 NGQRKMTYVGRPTAASPATGSKM 198 (214)
Q Consensus 176 ~~~~~l~yvGRp~saspAtG~~~ 198 (214)
....++..+|=|..=.+ .|...
T Consensus 648 ~~~~~v~~iGipd~F~~-~G~~~ 669 (701)
T PLN02225 648 DGNIKWRPIVLPDGYIE-EASPR 669 (701)
T ss_pred cCCCcEEEEecCCcCcC-CCCHH
Confidence 00135777777765443 45443
No 24
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=94.72 E-value=0.23 Score=48.86 Aligned_cols=165 Identities=13% Similarity=0.142 Sum_probs=103.0
Q ss_pred cccCCCCCEEEcCCChhhHHHHHHHhh--hcCCCCceEEeCCcccccCCCCCCcccccCCCCCceEcccCCC--------
Q psy8747 18 AQRDKFPPVSVGTTTPANLFHILRRQI--ALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDS-------- 87 (214)
Q Consensus 18 ~~~~~~NmqV~~pSTpAqyFHlLRRQ~--~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~vi~d~~-------- 87 (214)
+...+.-|-|..|+|+---|++-.+-. ...|+-|.||++=+.|-..... -.+.+......+.+.-.|+.
T Consensus 121 ~~~~~~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (595)
T TIGR03336 121 HYAKFAKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGD-VELGEIPKEEVVKGFEKDPERYVMVPAI 199 (595)
T ss_pred HHHHhcCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceee-EecCCCcccccccCCCCChhhcCCCchh
Confidence 344456888999999888888877643 3469999999987654433222 22222100000000000100
Q ss_pred -----------------------ccccCcccccEEEEecccchHHHHHHHHhcCCCCceEEEEeeccCCCcHHHHHHHHh
Q psy8747 88 -----------------------ISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECL 144 (214)
Q Consensus 88 -----------------------~~~~~~~~v~rvvlCSGKvyydL~~~r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~ 144 (214)
.+...-+.-+-+|+++|..++..++..++.++ ++.++++=.++|||.+.|.+.++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~Gi--~~~v~~~~~i~Pld~~~i~~~~~ 277 (595)
T TIGR03336 200 ARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERLGV--DVSVLKIGFTYPVPEGLVEEFLS 277 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHcCC--CeEEEEeCCCCCCCHHHHHHHHh
Confidence 00000012347899999999999998887764 69999999999999999999998
Q ss_pred cCCCCcEEEeccCcCCCCcccchHHHHHhhhCC-CCceeEecCCCCCCCC
Q psy8747 145 RYPNAKVQWVQEEHKNQGAWTYVQPRFNTTVNG-QRKMTYVGRPTAASPA 193 (214)
Q Consensus 145 ~y~na~~vW~QEEP~NmGAW~~v~~~l~~~~~~-~~~l~yvGRp~saspA 193 (214)
++. .+.+=||.. .| +...+..++.. +.++...|+|..=.|.
T Consensus 278 ~~~---~vivvEe~~-~~----~~~~~~~~~~~~~~~v~~~G~~d~fi~~ 319 (595)
T TIGR03336 278 GVE---EVLVVEELE-PV----VEEQVKALAGTAGLNIKVHGKEDGFLPR 319 (595)
T ss_pred cCC---eEEEEeCCc-cH----HHHHHHHHHHhcCCCeEEecccCCccCc
Confidence 764 456778855 33 44444444332 2257788998655554
No 25
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=94.72 E-value=0.2 Score=46.51 Aligned_cols=132 Identities=11% Similarity=0.122 Sum_probs=83.3
Q ss_pred CCCCEEEcCCChhhHHHHHHHhhh--cCCCCceEEeCCcccccCCCCCCccccc---CCCCCceEcccCCCc--------
Q psy8747 22 KFPPVSVGTTTPANLFHILRRQIA--LPFRKPLVLMTPKSLLRHPEAKSSFDDM---IEGTEFLRVIPDDSI-------- 88 (214)
Q Consensus 22 ~~NmqV~~pSTpAqyFHlLRRQ~~--r~~rKPLIv~tPKSLLR~~~a~S~l~ef---~~g~~F~~vi~d~~~-------- 88 (214)
+..|.|..|+|+..-|.+-..-.. ..++-|.||++=+.| -|-...-.+.|. ...- -..++.....
T Consensus 133 d~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~l-sh~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 210 (352)
T PRK07119 133 DYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVL-GQMMEPVEFPPRKKRPLPP-KDWAVTGTKGRRKNIITS 210 (352)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhh-hCceeeecCCchhhcccCC-CCCccCCCCCCceeccCC
Confidence 678999999999988887765433 468899999987764 231111111111 0000 0001110000
Q ss_pred -----------------------------cccCcccccEEEEecccchHHHHHHHHh---cCCCCceEEEEeeccCCCcH
Q psy8747 89 -----------------------------SERKADSVEKLVFCSGKVYYDLIKARND---NNLGDKIAVVRVEQISPFPF 136 (214)
Q Consensus 89 -----------------------------~~~~~~~v~rvvlCSGKvyydL~~~r~~---~~~~~~vAIvRiEQLyPfP~ 136 (214)
..-..++-+.+|+|+|-.+....+..+. .|. ++.++++=.++|||.
T Consensus 211 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~Gi--~v~vi~~~~l~Pfp~ 288 (352)
T PRK07119 211 LFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREEGI--KVGLFRPITLWPFPE 288 (352)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHcCC--eEEEEeeceecCCCH
Confidence 0000134568999999999888776654 453 699999999999999
Q ss_pred HHHHHHHhcCCCCcEEEeccCcCCCC
Q psy8747 137 DLVKKECLRYPNAKVQWVQEEHKNQG 162 (214)
Q Consensus 137 ~~l~~~l~~y~na~~vW~QEEP~NmG 162 (214)
+.|.+.++++..+ -+=|+ |.|
T Consensus 289 ~~i~~~l~~~k~V---ivvE~--n~g 309 (352)
T PRK07119 289 KALEELADKGKGF---LSVEM--SMG 309 (352)
T ss_pred HHHHHHHhCCCEE---EEEeC--Ccc
Confidence 9999999877553 33444 665
No 26
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=94.51 E-value=0.09 Score=49.27 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=47.1
Q ss_pred cccEEEEecccchHHHHHHHHh---cCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCc
Q psy8747 95 SVEKLVFCSGKVYYDLIKARND---NNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEH 158 (214)
Q Consensus 95 ~v~rvvlCSGKvyydL~~~r~~---~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP 158 (214)
.-+-+|+|+|..+.+..+.-+. .|. +|.++|+=.|+|||.++|.+.++++.. |-|=||.
T Consensus 273 ~ad~~iv~~Gs~~~~a~eAv~~Lr~~G~--~v~~l~~~~l~Pfp~~~i~~~~~~~k~---VivvEe~ 334 (376)
T PRK08659 273 DAEVVVVAYGSVARSARRAVKEAREEGI--KVGLFRLITVWPFPEEAIRELAKKVKA---IVVPEMN 334 (376)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHhcCC--ceEEEEeCeecCCCHHHHHHHHhcCCE---EEEEeCC
Confidence 4568999999999988876654 353 699999999999999999999987644 4455664
No 27
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=94.38 E-value=0.34 Score=45.83 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=43.4
Q ss_pred cccEEEEecccchHHHHHHHHh---cCCCCceEEEEeeccCCCcHHHHHHHHhcCCCC
Q psy8747 95 SVEKLVFCSGKVYYDLIKARND---NNLGDKIAVVRVEQISPFPFDLVKKECLRYPNA 149 (214)
Q Consensus 95 ~v~rvvlCSGKvyydL~~~r~~---~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na 149 (214)
+.+-||+|.|-.+-.+.+.-+. .|. +|.++||=.++|||.++|.+.+++.+.+
T Consensus 261 DAe~viV~~GS~~~~~keav~~LR~~G~--kVGllri~~~rPFP~~~i~~~l~~~k~V 316 (394)
T PRK08367 261 DAEIIFVTMGSLAGTLKEFVDKLREEGY--KVGAAKLTVYRPFPVEEIRALAKKAKVL 316 (394)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHhcCC--cceeEEEeEecCCCHHHHHHHHccCCEE
Confidence 4668999999998877665443 453 6999999999999999999999877654
No 28
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=92.83 E-value=0.17 Score=41.10 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=29.2
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcc
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKS 59 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKS 59 (214)
-||+|+.|++|.++.++||..+..+-+.+.|++++|.
T Consensus 132 P~~~v~~P~~~~e~~~~l~~a~~~~~~p~~i~~~~~~ 168 (168)
T smart00861 132 PGLKVVAPSDPAEAKGLLRAAIRRDDGPPVIRLERKS 168 (168)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 4999999999999999999999443333377777763
No 29
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=92.82 E-value=0.55 Score=44.44 Aligned_cols=151 Identities=16% Similarity=0.235 Sum_probs=94.5
Q ss_pred cccCCCCCEEEcCCChhhHHHHHHHhhhc--CC--CCceEEeCCcccccC-CCCCCc-----ccccCCCCCceEc--ccC
Q psy8747 18 AQRDKFPPVSVGTTTPANLFHILRRQIAL--PF--RKPLVLMTPKSLLRH-PEAKSS-----FDDMIEGTEFLRV--IPD 85 (214)
Q Consensus 18 ~~~~~~NmqV~~pSTpAqyFHlLRRQ~~r--~~--rKPLIv~tPKSLLR~-~~a~S~-----l~ef~~g~~F~~v--i~d 85 (214)
++.++..|.|..|+|+---|.+...-..- .+ +.|.||++=..++-| ...+.. ..+|. + .|++. ..|
T Consensus 131 ~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~-~-~~~~~~~~~~ 208 (407)
T PRK09622 131 YLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFV-G-EYQTKNSMLD 208 (407)
T ss_pred HHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhcc-C-cccccccccC
Confidence 44566779999999988777776654443 56 899999988887655 111111 11121 1 12211 000
Q ss_pred --------------------C--Ccc---------------------------ccCcccccEEEEecccchHHHHHHHHh
Q psy8747 86 --------------------D--SIS---------------------------ERKADSVEKLVFCSGKVYYDLIKARND 116 (214)
Q Consensus 86 --------------------~--~~~---------------------------~~~~~~v~rvvlCSGKvyydL~~~r~~ 116 (214)
. ... .-..+.-+-+|+|.|-.+-...+..+.
T Consensus 209 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~ 288 (407)
T PRK09622 209 FDKPVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKE 288 (407)
T ss_pred CCCCccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHH
Confidence 0 000 000123457999999987777655433
Q ss_pred ---cCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcccchHHHHHhhh
Q psy8747 117 ---NNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTYVQPRFNTTV 175 (214)
Q Consensus 117 ---~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW~~v~~~l~~~~ 175 (214)
.| .++.++++=.++|||.+.|.+.++++ +-+.|=||-...|++.-+...+...+
T Consensus 289 L~~~G--~kvgvi~~r~~~Pfp~~~l~~~l~~~---k~VvVvE~~~~~Gg~G~l~~ev~~al 345 (407)
T PRK09622 289 MRKEG--IKAGVATIRVLRPFPYERLGQALKNL---KALAILDRSSPAGAMGALFNEVTSAV 345 (407)
T ss_pred HHhCC--CCeEEEEeeEhhhCCHHHHHHHHhcC---CEEEEEeCCCCCCCccHHHHHHHHHH
Confidence 35 37999999999999999999999654 55667788877787765444443333
No 30
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=92.56 E-value=2.2 Score=43.18 Aligned_cols=133 Identities=16% Similarity=0.173 Sum_probs=88.0
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCC--CcccccCCCCCceEcccCCCccccCcccccEEE
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAK--SSFDDMIEGTEFLRVIPDDSISERKADSVEKLV 100 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~--S~l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvv 100 (214)
-||.|+.|++|....++|+.-+..+ ..|-++..||......... ..-..+.-|. . .|+.+. + +-.|
T Consensus 482 Pnl~V~~Psd~~E~~~~l~~a~~~~-~~Pv~ir~~R~~~~~~~~~~~~~~~~~~iGk-~-~vlreG-------~--dvtI 549 (641)
T PLN02234 482 PNMIVMAPSDEAELFNMVATAAAID-DRPSCFRYHRGNGIGVSLPPGNKGVPLQIGR-G-RILRDG-------E--RVAL 549 (641)
T ss_pred CCCEEEeeCCHHHHHHHHHHHHhCC-CCCEEEEeecccccccccCCCCccccccCce-E-EEEEeC-------C--CEEE
Confidence 4999999999999999999866543 4799999998764211100 0000111111 1 233321 1 3578
Q ss_pred EecccchHHHHHHHH---hcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcc-cchHHHHHh
Q psy8747 101 FCSGKVYYDLIKARN---DNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAW-TYVQPRFNT 173 (214)
Q Consensus 101 lCSGKvyydL~~~r~---~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW-~~v~~~l~~ 173 (214)
+++|-..+..++..+ +.++ ++-+|-+=.+.||+.+.|.+..+++ .++-+-||..- |.+ +.|...+.+
T Consensus 550 va~G~~v~~Al~AA~~L~~~GI--~v~VId~rsikPlD~~~i~sl~k~~---~~vVt~Ee~~~-GG~Gs~Va~~l~e 620 (641)
T PLN02234 550 LGYGSAVQRCLEAASMLSERGL--KITVADARFCKPLDVALIRSLAKSH---EVLITVEEGSI-GGFGSHVVQFLAL 620 (641)
T ss_pred EEecHHHHHHHHHHHHHHhcCC--CEEEEecCCcCCCCHHHHHHHHHhC---CEEEEECCCCC-CcHHHHHHHHHHH
Confidence 999998888877654 3354 6999999999999999887766655 35556788866 665 556666644
No 31
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=87.99 E-value=1.2 Score=47.96 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=58.1
Q ss_pred ccEEEEecccchHHHHHHHHhcCCCCc-------eEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcccchH
Q psy8747 96 VEKLVFCSGKVYYDLIKARNDNNLGDK-------IAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTYVQ 168 (214)
Q Consensus 96 v~rvvlCSGKvyydL~~~r~~~~~~~~-------vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW~~v~ 168 (214)
-+--|+||||.|.|+.+..+..++ ++ +.|..|=.-||||.+.|.+-++.+ +=|.|=||-+ .||+
T Consensus 275 ~~iGIItsG~ay~~v~EAL~~Lgl-~~~~~~~lgirilKvgm~~PL~~~~i~~F~~g~---d~VlVVEE~~-----p~iE 345 (1159)
T PRK13030 275 ARVGIVTCGKAHLDLMEALRRLGL-DDADLRAAGIRIYKVGLSWPLEPTRLREFADGL---EEILVIEEKR-----PVIE 345 (1159)
T ss_pred CCEEEEEeCccHHHHHHHHHHcCC-CcccccccCccEEEeCCccCCCHHHHHHHHhcC---CEEEEEeCCc-----hHHH
Confidence 346799999999999999998886 34 889999999999999999999875 4566778753 4777
Q ss_pred HHHHhhh
Q psy8747 169 PRFNTTV 175 (214)
Q Consensus 169 ~~l~~~~ 175 (214)
..+..++
T Consensus 346 ~Qlk~~l 352 (1159)
T PRK13030 346 QQIKDYL 352 (1159)
T ss_pred HHHHHHH
Confidence 7777766
No 32
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=87.45 E-value=1.3 Score=47.63 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=58.2
Q ss_pred cEEEEecccchHHHHHHHHhcCCCC------ceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcccchHHH
Q psy8747 97 EKLVFCSGKVYYDLIKARNDNNLGD------KIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTYVQPR 170 (214)
Q Consensus 97 ~rvvlCSGKvyydL~~~r~~~~~~~------~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW~~v~~~ 170 (214)
+--|+||||.|.|+.+..+..|+++ ++.|.+|=.-||+|.+.+.+-++.+ +-|.|=||-+ .||+..
T Consensus 284 ~iGIItsG~~y~~v~eal~~lg~~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~---~~vlVVEE~~-----p~iE~q 355 (1165)
T PRK09193 284 RLGIVAAGKAYLDVRQALRDLGLDEETAARLGIRLYKVGMVWPLEPQGVRAFAEGL---DEILVVEEKR-----QIIEYQ 355 (1165)
T ss_pred CEEEEecCccHHHHHHHHHHcCCChhhhcccCCCEEEeCCCCCCCHHHHHHHHhcC---CEEEEEecCc-----hHHHHH
Confidence 4678999999999999999888632 3999999999999999999988765 4566778853 478888
Q ss_pred HHhhh
Q psy8747 171 FNTTV 175 (214)
Q Consensus 171 l~~~~ 175 (214)
+..++
T Consensus 356 lk~~l 360 (1165)
T PRK09193 356 LKEEL 360 (1165)
T ss_pred HHHHH
Confidence 87765
No 33
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=87.41 E-value=1.2 Score=47.81 Aligned_cols=83 Identities=19% Similarity=0.276 Sum_probs=63.3
Q ss_pred cEEEEecccchHHHHHHHHhcCCCC------ceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcccchHHH
Q psy8747 97 EKLVFCSGKVYYDLIKARNDNNLGD------KIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTYVQPR 170 (214)
Q Consensus 97 ~rvvlCSGKvyydL~~~r~~~~~~~------~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW~~v~~~ 170 (214)
+--|+||||.|.|+.+..+..|+++ .+.|.+|=.-||+|.+.+.+-.+.+ +-|.|=||-+ .||+..
T Consensus 287 ~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~---d~vlVVEE~~-----p~iE~q 358 (1186)
T PRK13029 287 RLGIIAAGKAYLDVRQALRDLGLDDATCAALGIRLLKVGCVWPLDPQSVREFAQGL---EEVLVVEEKR-----AVIEYQ 358 (1186)
T ss_pred CEEEEecCccHHHHHHHHHHcCCChhhccccCCCEEEeCCCCCCCHHHHHHHHhcC---CEEEEEecCc-----hHHHHH
Confidence 4578999999999999999888732 3899999999999999999988765 4556778853 578888
Q ss_pred HHhhhCC---CCceeEecCC
Q psy8747 171 FNTTVNG---QRKMTYVGRP 187 (214)
Q Consensus 171 l~~~~~~---~~~l~yvGRp 187 (214)
+..++-+ ..+...+|+-
T Consensus 359 lk~~l~~~~~~~rp~v~GK~ 378 (1186)
T PRK13029 359 LKEELYNWREDVRPAIFGKF 378 (1186)
T ss_pred HHHHHhhccCCcCCeeEecc
Confidence 8776632 1123566764
No 34
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=84.38 E-value=1.6 Score=33.79 Aligned_cols=73 Identities=16% Similarity=0.278 Sum_probs=54.4
Q ss_pred ccEEEEecccchHHHHHHHHh---cCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcccc-hHHHH
Q psy8747 96 VEKLVFCSGKVYYDLIKARND---NNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTY-VQPRF 171 (214)
Q Consensus 96 v~rvvlCSGKvyydL~~~r~~---~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW~~-v~~~l 171 (214)
-+-+|+|+|-..+..++..+. .|. ++.++.+=.+.||+.+.|.+.++++... -+=||.--.|.|.- +...+
T Consensus 10 ~di~iia~G~~~~~al~A~~~L~~~Gi--~~~vi~~~~i~P~d~~~l~~~~~~~~~v---vvvee~~~~gg~g~~i~~~l 84 (124)
T PF02780_consen 10 ADITIIAYGSMVEEALEAAEELEEEGI--KAGVIDLRTIKPFDEEALLESLKKTGRV---VVVEEHYKIGGLGSAIAEYL 84 (124)
T ss_dssp SSEEEEEETTHHHHHHHHHHHHHHTTC--EEEEEEEEEEESSBHHHHHHHSHHHHHH---HHSETCESEEEEHSSHHHHH
T ss_pred CCEEEEeehHHHHHHHHHHHHHHHcCC--ceeEEeeEEEecccccchHHHHHHhccc---cccccccccccHHHHHHHHH
Confidence 357899999999888887755 343 7999999999999999999999887553 24456554666644 55555
Q ss_pred Hh
Q psy8747 172 NT 173 (214)
Q Consensus 172 ~~ 173 (214)
.+
T Consensus 85 ~~ 86 (124)
T PF02780_consen 85 AE 86 (124)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 35
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=81.76 E-value=24 Score=33.13 Aligned_cols=134 Identities=18% Similarity=0.225 Sum_probs=85.4
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccCCCCCceEcccCCCccccCcccccEEEEe
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFC 102 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvlC 102 (214)
--+.|+.||||...--||.--+.. .-|.|+|-||.|.|....--+-+|++ -| |+.... ...-+.| =|++
T Consensus 139 PGlKVV~PStpyDAKGLL~aAIrd--~dPViflE~k~lY~~~~~eVP~~~Y~-----iP-lGkA~i-~reG~Dv--Tivt 207 (324)
T COG0022 139 PGLKVVMPSTPYDAKGLLKAAIRD--PDPVIFLEHKRLYRSFKGEVPEEDYT-----IP-LGKAKI-VREGSDV--TIVT 207 (324)
T ss_pred CCceEEecCChHHHHHHHHHHhcC--CCCEEEEecHHHhcccccCCCCCCcc-----cc-ccceee-EecCCce--EEEE
Confidence 468999999999999999865533 36999999999999522222222221 11 111110 0011122 3566
Q ss_pred ccc-chHHHHHH--HHhcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcccchHHHH
Q psy8747 103 SGK-VYYDLIKA--RNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTYVQPRF 171 (214)
Q Consensus 103 SGK-vyydL~~~--r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW~~v~~~l 171 (214)
.|. |..-|.+. .++.|+ ++=||-|=-|.|+..+-|.+..+|=. .++=|+|-++-.|-=.-+.-.+
T Consensus 208 yg~mv~~al~AAe~l~~~Gi--s~EVIDLRTl~PlD~etIi~SvkKTg--R~viV~Ea~~~~g~gaei~A~i 275 (324)
T COG0022 208 YGAMVHTALEAAEELEKEGI--SAEVIDLRTLSPLDKETIIASVKKTG--RLVIVHEAPKTGGIGAEIAALI 275 (324)
T ss_pred echHHHHHHHHHHHHhhcCC--CeEEEeccccCccCHHHHHHHHHhhC--cEEEEEeccccCChHHHHHHHH
Confidence 676 66666555 334454 69999999999999999888887654 4666888887776544444433
No 36
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=79.38 E-value=7.8 Score=41.73 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=48.0
Q ss_pred ccccEEEEecccchHHHHH---HHHhcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcc
Q psy8747 94 DSVEKLVFCSGKVYYDLIK---ARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAW 164 (214)
Q Consensus 94 ~~v~rvvlCSGKvyydL~~---~r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW 164 (214)
+..+.||++-|-..-.+.+ ..++.| .+|.+|||=.+.|||.++|.+.|.+ +++-|=|=|--...|++
T Consensus 263 ~dAe~ViV~~GS~~~~~~eav~~Lr~~G--~kVGli~vr~~rPFp~e~l~~aLp~--svK~I~Vler~~~~g~~ 332 (1165)
T TIGR02176 263 PDAERVIIAMGSVAETIEETVDYLNAKG--EKVGLLKVRLYRPFSAETFFAALPK--SVKRIAVLDRTKEPGAA 332 (1165)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHhcC--CceeEEEEeEeCCCCHHHHHHHHHh--cCCEEEEEECCCCCCcc
Confidence 4578999999998766643 333445 4799999999999999999999853 34433344544556754
No 37
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=79.25 E-value=13 Score=37.73 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=68.0
Q ss_pred cEE-EEecccchHHHHHHHHhcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcccchHHHHHhhh
Q psy8747 97 EKL-VFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTYVQPRFNTTV 175 (214)
Q Consensus 97 ~rv-vlCSGKvyydL~~~r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW~~v~~~l~~~~ 175 (214)
.+| |++||+-|=++.+.-++.+++ ..+.+|=--||||.+.+.+-++. .+=+=|=||-+ +||...+..++
T Consensus 248 ~~lGII~~G~ay~yVkeAl~~lgl~--~~~lklg~~~Plp~~~i~~F~~g---~~~vlVVEE~~-----P~iE~qv~~~l 317 (640)
T COG4231 248 AKLGIIASGIAYNYVKEALEDLGLD--DELLKLGTPYPLPEQLIENFLKG---LERVLVVEEGE-----PFIEEQVKALL 317 (640)
T ss_pred CceEEEecCccHHHHHHHHHHcCCC--ceeEEecCCcCCCHHHHHHHHhc---CcEEEEEecCC-----chHHHHHHHHH
Confidence 466 999999999999999999973 44999999999999999888764 44334556633 38999988877
Q ss_pred C-CCCceeEecCCCCCCCCCCCH
Q psy8747 176 N-GQRKMTYVGRPTAASPATGSK 197 (214)
Q Consensus 176 ~-~~~~l~yvGRp~saspAtG~~ 197 (214)
. .+..+.+.|-...==|..|-.
T Consensus 318 ~~~g~~v~v~GKd~gllP~~GEl 340 (640)
T COG4231 318 YDAGLPVEVHGKDEGLLPMEGEL 340 (640)
T ss_pred HhcCCceEeecccccccCccccc
Confidence 4 345567777765555555544
No 38
>PRK05899 transketolase; Reviewed
Probab=75.26 E-value=39 Score=33.61 Aligned_cols=123 Identities=13% Similarity=0.128 Sum_probs=77.8
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccCCCCCceEcccCCCccccCcccccEEEEe
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFC 102 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvlC 102 (214)
-||+|+.|++|.....+|+.=+ +....|-+|..||.-.....-.++..++..| . .++.+. -+-.|++
T Consensus 451 P~~~V~~P~d~~e~~~~l~~a~-~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G-~--~~l~~G---------~dvtiia 517 (624)
T PRK05899 451 PNLTVIRPADANETAAAWKYAL-ERKDGPSALVLTRQNLPVLERTAQEEGVAKG-G--YVLRDD---------PDVILIA 517 (624)
T ss_pred CCcEEEeCCCHHHHHHHHHHHH-HcCCCCEEEEEeCCCCCCcCCccccccccCC-c--EEEecC---------CCEEEEE
Confidence 4999999999999999998765 4436899998887533211100011234333 2 334321 1367899
Q ss_pred cccchHHHHHHHH---hcCCCCceEEEEeeccCCCcHHH---HHHHHhcCCCC-cEEEeccCcCCCCcc
Q psy8747 103 SGKVYYDLIKARN---DNNLGDKIAVVRVEQISPFPFDL---VKKECLRYPNA-KVQWVQEEHKNQGAW 164 (214)
Q Consensus 103 SGKvyydL~~~r~---~~~~~~~vAIvRiEQLyPfP~~~---l~~~l~~y~na-~~vW~QEEP~NmGAW 164 (214)
+|-.-++.++..+ +.++ ++.+|-+=-|.||..++ +...|. ... +++ +.|++-- +.|
T Consensus 518 ~G~~v~~al~Aa~~L~~~gi--~~~VId~~sikPlD~~e~h~~~~~lg--~~~~~~v-~~e~~~~-~g~ 580 (624)
T PRK05899 518 TGSEVHLALEAADELEAEGI--KVRVVSMPSTELFDEQDAAYKESVLP--AAVTARV-AVEAGVA-DGW 580 (624)
T ss_pred eCHHHHHHHHHHHHHHhcCC--cEEEEECCCcchhccCcHHHHhcccc--ccccceE-EEccCCc-cch
Confidence 9998888777554 3354 69999999999999995 333331 222 555 4466544 667
No 39
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=69.05 E-value=38 Score=34.21 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=80.4
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccCCCCCceEcccCCCccccCcccccEEEEe
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFC 102 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvlC 102 (214)
-||.|+-|+++.....+++.-+ .+...|-+|..|+.-..... ..+..+|..|. .++-+. +.-+-+|++
T Consensus 480 Pn~~v~~PaD~~E~~~~~~~a~-~~~~gP~~irl~r~~~~~~~-~~~~~~~~~G~---~vl~~~-------~g~dv~iia 547 (653)
T TIGR00232 480 PNLSVWRPCDGNETAAAWKYAL-ESQDGPTALILSRQNLPQLE-ESSLEKVLKGG---YVLKDS-------KGPDIILIA 547 (653)
T ss_pred CCCEEEeeCCHHHHHHHHHHHH-hcCCCcEEEEEcCCccCCCC-cccccccCCCc---EEEEec-------CCCCEEEEE
Confidence 3999999999999999997654 45568999998887543221 11223454442 344221 112357899
Q ss_pred cccchHHHHHHHH---hcCCCCceEEEEeeccCCCcHHH---HHHHHhcCCCCcEEEeccCcCCCCcc
Q psy8747 103 SGKVYYDLIKARN---DNNLGDKIAVVRVEQISPFPFDL---VKKECLRYPNAKVQWVQEEHKNQGAW 164 (214)
Q Consensus 103 SGKvyydL~~~r~---~~~~~~~vAIvRiEQLyPfP~~~---l~~~l~~y~na~~vW~QEEP~NmGAW 164 (214)
+|-.-..-++..+ +.|+ ++.+|-+=-+-||..+. +.+++.++. .+..=||. +.+.|
T Consensus 548 ~G~~v~~al~Aa~~L~~~Gi--~~~VI~~~~ikpld~~~~~~~~~~~~~~~---~vvtvEe~-~~~g~ 609 (653)
T TIGR00232 548 TGSEVSLAVEAAKKLAAENI--KVRVVSMPSFDLFDKQDEEYRESVLPANV---TRLAVEAG-AADEW 609 (653)
T ss_pred eChHHHHHHHHHHHHHhcCC--cEEEEecccCcccccCCHHHHHHHhcccC---ceEEEecc-cHhHH
Confidence 9987776665543 3454 69999999999996544 666666553 34455666 44567
No 40
>PLN02790 transketolase
Probab=61.96 E-value=1.2e+02 Score=30.62 Aligned_cols=128 Identities=14% Similarity=0.134 Sum_probs=81.4
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccCCCCCceEcccCCCccccCcccccEEEEe
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFC 102 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvlC 102 (214)
-||.|.-|+++.....+|+.-+ .+...|-.|-.|+.=+-.- ...+.++|..|. .++.+.+. ..+-+-+|++
T Consensus 477 Pnl~V~~PaD~~E~~~~l~~al-~~~~gP~~irl~R~~~~~~-~~~~~~~~~~G~---~vl~~~~~----~~~~dv~iia 547 (654)
T PLN02790 477 PNILMLRPADGNETAGAYKVAV-TNRKRPTVLALSRQKVPNL-PGTSIEGVEKGG---YVISDNSS----GNKPDLILIG 547 (654)
T ss_pred CCcEEEeCCCHHHHHHHHHHHH-HcCCCCEEEEecCCCCCCC-CCCcccccccCc---EEEEeCCC----CCCCCEEEEE
Confidence 3999999999999999998755 3456899888887633110 111134565552 45544210 0012358899
Q ss_pred cccchHHHHHHHHh---cCCCCceEEEEeeccCCCcHHHHH---HHHhcCCCCcEEEeccCcCCCCcc
Q psy8747 103 SGKVYYDLIKARND---NNLGDKIAVVRVEQISPFPFDLVK---KECLRYPNAKVQWVQEEHKNQGAW 164 (214)
Q Consensus 103 SGKvyydL~~~r~~---~~~~~~vAIvRiEQLyPfP~~~l~---~~l~~y~na~~vW~QEEP~NmGAW 164 (214)
+|-....-++..+. .|+ ++.+|-+=-+-||..+.+. +.+. ++...+-.-||.-- |.|
T Consensus 548 ~G~~v~~Al~Aa~~L~~~gi--~~~VV~~~~ikpld~~~~~y~~~~~~--~~~~~vvtiE~~~~-~G~ 610 (654)
T PLN02790 548 TGSELEIAAKAAKELRKEGK--KVRVVSMVCWELFEEQSDEYKESVLP--SSVTARVSVEAGST-FGW 610 (654)
T ss_pred cCHHHHHHHHHHHHHHhcCC--ceEEEecCccchhhhhHHHHHHhhhc--cccceEEEecCccc-hhH
Confidence 99988777766544 354 6999998888898887654 4441 22344557778765 445
No 41
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.21 E-value=12 Score=31.26 Aligned_cols=36 Identities=19% Similarity=0.502 Sum_probs=30.6
Q ss_pred cCCCcHHHHHHHHhcCCCC-cEEEeccCcCCCCcccch
Q psy8747 131 ISPFPFDLVKKECLRYPNA-KVQWVQEEHKNQGAWTYV 167 (214)
Q Consensus 131 LyPfP~~~l~~~l~~y~na-~~vW~QEEP~NmGAW~~v 167 (214)
|-|||.+...+ .++-+.. .-||...|++|-|.|.|-
T Consensus 39 Lp~lpe~~~~~-en~V~GC~S~vwL~~~~~~~~~~~F~ 75 (144)
T COG2166 39 LPPLPEELRAE-ENPVPGCQSQVWLVTEQNDDGTLHFF 75 (144)
T ss_pred CCCCCHHHHhh-ccCCCccccceeEEEeecCCceEEEe
Confidence 88999887766 6677787 599999999999999993
No 42
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=46.35 E-value=28 Score=32.40 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=20.5
Q ss_pred EEEEecccchHHHHHHHHhcCCC
Q psy8747 98 KLVFCSGKVYYDLIKARNDNNLG 120 (214)
Q Consensus 98 rvvlCSGKvyydL~~~r~~~~~~ 120 (214)
.||+||||-+.++...+++.+..
T Consensus 36 ~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 36 PLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred EEEEEcCCCHHHHHHHHHHhCCC
Confidence 69999999999999999887763
No 43
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=37.71 E-value=1.1e+02 Score=25.90 Aligned_cols=51 Identities=10% Similarity=0.099 Sum_probs=35.5
Q ss_pred EEEEecccchHHHHHHHHhcCCCCce-----EEEEe----ec--cCCCcHHHHHHHHhcCCC
Q psy8747 98 KLVFCSGKVYYDLIKARNDNNLGDKI-----AVVRV----EQ--ISPFPFDLVKKECLRYPN 148 (214)
Q Consensus 98 rvvlCSGKvyydL~~~r~~~~~~~~v-----AIvRi----EQ--LyPfP~~~l~~~l~~y~n 148 (214)
+|++|||+-|.++....++.+....+ |+|.- |. -.|+|.+.+.++++...+
T Consensus 38 ~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~d~~~~~~l~~~~l~~~~~~~i~~~~~~ 99 (272)
T PRK10530 38 KVIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYQAKKVLEADPLPVQQALQVIEMLDE 99 (272)
T ss_pred EEEEEcCCChHHHHHHHHhcCCCCCEEEcCCcEEEecCCCEEEEecCCCHHHHHHHHHHHHh
Confidence 79999999999988877766642211 44542 22 368999998888875543
No 44
>PTZ00089 transketolase; Provisional
Probab=37.19 E-value=3e+02 Score=27.90 Aligned_cols=128 Identities=11% Similarity=0.012 Sum_probs=76.2
Q ss_pred CCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccCCCCCceEcccCCCccccCcccccEEEEec
Q psy8747 24 PPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCS 103 (214)
Q Consensus 24 NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvlCS 103 (214)
||.|.-|+.+.....+|+.=+ .....|-+|-.|+.=+. .-..+-.+|..++ -.||.+.. ..-+-.|+++
T Consensus 488 n~~V~~PaD~~E~~~~l~~al-~~~~gP~~irl~R~~~~--~~~~~~~~~~~~g--~~vl~~~~------~~~dv~iia~ 556 (661)
T PTZ00089 488 NLLVIRPADGTETSGAYALAL-ANAKTPTILCLSRQNTP--PLPGSSIEGVLKG--AYIVVDFT------NSPQLILVAS 556 (661)
T ss_pred CcEEEecCCHHHHHHHHHHHH-HcCCCCEEEEecCCCCC--CcCCCccccccCc--eEEEeccC------CCCCEEEEee
Confidence 999999999999999997655 34567988888765221 1111111322221 23454421 0124589999
Q ss_pred ccchHHHHHHHHhcCCCCceEEEEeeccCCCcHHHHHHHHhcCC-CCcEEEeccCcCCCC
Q psy8747 104 GKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYP-NAKVQWVQEEHKNQG 162 (214)
Q Consensus 104 GKvyydL~~~r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~-na~~vW~QEEP~NmG 162 (214)
|-....-++..+.....-++.+|-+=-+-||..+.+...-.-.+ ...-+=+-|+..-.|
T Consensus 557 G~~v~~Al~Aa~~L~~Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g 616 (661)
T PTZ00089 557 GSEVSLCVEAAKALSKELNVRVVSMPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFG 616 (661)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHH
Confidence 99888877766543102469999998899998886554311122 111233456665544
No 45
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=34.41 E-value=64 Score=26.05 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=27.2
Q ss_pred CCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCc
Q psy8747 24 PPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPK 58 (214)
Q Consensus 24 NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPK 58 (214)
|+.|+.||+|....=+|+.=+..+ .|-++..||
T Consensus 124 g~~v~~Ps~~~~~~~ll~~a~~~~--~P~~irl~~ 156 (156)
T cd07033 124 NMTVLRPADANETAAALEAALEYD--GPVYIRLPR 156 (156)
T ss_pred CCEEEecCCHHHHHHHHHHHHhCC--CCEEEEeeC
Confidence 999999999999999998776543 488877664
No 46
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=33.67 E-value=23 Score=29.14 Aligned_cols=49 Identities=22% Similarity=0.439 Sum_probs=36.9
Q ss_pred cCCCCceEEeCCcccccCCCCCCcccccCCCCCceEcccCCCccccCcccccEEEEeccc
Q psy8747 46 LPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGK 105 (214)
Q Consensus 46 r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvlCSGK 105 (214)
..+|++|+|| |.+ =+.-.+++++|++.. .|.+|+... ..|+-||+-||.
T Consensus 31 ~sh~~SlL~l-pdg--v~~W~v~~~~~Lt~e-~f~~vl~~a-------~~~EilliGTG~ 79 (127)
T COG3737 31 MSHRGSLLVL-PDG--VCDWEVATLSDLTPE-DFERVLAEA-------PDVEILLIGTGA 79 (127)
T ss_pred ccccccEEEe-cCc--cccccccChhhCCHH-HHHHHHhcC-------CCceEEEEecCc
Confidence 4567888776 444 355667999999875 599999763 468899999995
No 47
>KOG3350|consensus
Probab=31.04 E-value=36 Score=30.11 Aligned_cols=44 Identities=16% Similarity=0.385 Sum_probs=27.3
Q ss_pred ccccCCCCCceEcccCCCcccc-----Cc-------ccccEEEEecccchHHHHHHHH
Q psy8747 70 FDDMIEGTEFLRVIPDDSISER-----KA-------DSVEKLVFCSGKVYYDLIKARN 115 (214)
Q Consensus 70 l~ef~~g~~F~~vi~d~~~~~~-----~~-------~~v~rvvlCSGKvyydL~~~r~ 115 (214)
.+++ .+ .|..|+.||-.-.. .. ..-+|||+|||-|.=+...++-
T Consensus 129 p~~l-k~-~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeimee~~s~~l 184 (217)
T KOG3350|consen 129 PDEL-KA-HFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIMEEWASALL 184 (217)
T ss_pred HHHH-Hh-cccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhHHHHHHHh
Confidence 3445 33 48999888622000 00 1223999999999888877663
No 48
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=29.97 E-value=74 Score=20.64 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=22.1
Q ss_pred eccCCCcHHHHHHHHhcCCC-C-cEEEecc
Q psy8747 129 EQISPFPFDLVKKECLRYPN-A-KVQWVQE 156 (214)
Q Consensus 129 EQLyPfP~~~l~~~l~~y~n-a-~~vW~QE 156 (214)
+|.=||..++|.+.++.-.- . .+||.+.
T Consensus 9 ~~~GP~s~~el~~l~~~g~i~~~tlvw~~g 38 (45)
T PF14237_consen 9 QQQGPFSLEELRQLISSGEIDPDTLVWKEG 38 (45)
T ss_pred eEECCcCHHHHHHHHHcCCCCCCCeEeCCC
Confidence 56779999999999987544 3 6999754
No 49
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=29.90 E-value=86 Score=28.72 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=29.4
Q ss_pred EEEEecccchHHHHHHHHhcCCC-------CceEEEEeeccCCCcH
Q psy8747 98 KLVFCSGKVYYDLIKARNDNNLG-------DKIAVVRVEQISPFPF 136 (214)
Q Consensus 98 rvvlCSGKvyydL~~~r~~~~~~-------~~vAIvRiEQLyPfP~ 136 (214)
+|||||-|--|+.+..+++.+.. +.-||-==++-.|||.
T Consensus 41 ~Vi~~SSKT~aE~~~l~~~l~v~~~p~iaEnG~aI~~p~~~~~~~~ 86 (274)
T COG3769 41 PVILCSSKTRAEMLYLQKSLGVQGLPLIAENGAAIYLPKGWFPFDG 86 (274)
T ss_pred eEEEeccchHHHHHHHHHhcCCCCCceeecCCceEEecccccccCC
Confidence 89999999999999999987754 1234444567777763
No 50
>PRK12753 transketolase; Reviewed
Probab=29.08 E-value=5.5e+02 Score=26.16 Aligned_cols=105 Identities=11% Similarity=0.130 Sum_probs=69.4
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCC-CcccccCCCCCceEcccCCCccccCcccccEEEE
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAK-SSFDDMIEGTEFLRVIPDDSISERKADSVEKLVF 101 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~-S~l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvl 101 (214)
-||.|.-|+.+-..-.+++.-+. ....|..|-.|+.=+-...-. ....+|..|+ .+|.|.+ .+-+-+|+
T Consensus 486 Pn~~v~~PaD~~E~~~~~~~al~-~~~gP~~irl~R~~~~~~~~~~~~~~~~~~G~---~vl~~~~------~~~dv~ii 555 (663)
T PRK12753 486 PNFSTWRPCDQVEAAVAWKLAIE-RHNGPTALILSRQNLAQQERTPEQVKNIARGG---YILKDSG------GKPDLILI 555 (663)
T ss_pred CCCEEEccCCHHHHHHHHHHHHh-cCCCCEEEEecCCCCCCCCCcccchhhccCCc---EEEeccC------CCCCEEEE
Confidence 39999999999888888877553 346788877776532111100 1134465443 5555431 11235889
Q ss_pred ecccchHHHHHHHHh---cCCCCceEEEEeeccCCCcHHHH
Q psy8747 102 CSGKVYYDLIKARND---NNLGDKIAVVRVEQISPFPFDLV 139 (214)
Q Consensus 102 CSGKvyydL~~~r~~---~~~~~~vAIvRiEQLyPfP~~~l 139 (214)
+||-.-..-++..++ .|+ ++.+|-+=-+-||..+.+
T Consensus 556 a~Gs~v~~al~Aa~~L~~~gi--~~~Vv~~~~~kp~d~~~~ 594 (663)
T PRK12753 556 ATGSEVEITLQAAEKLTAEGR--NVRVVSMPSTDIFDAQDE 594 (663)
T ss_pred EeCHHHHHHHHHHHHHHhcCC--CcEEEECCcCCccchhHH
Confidence 999988777665543 454 699999999999999877
No 51
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=28.83 E-value=80 Score=27.07 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=35.6
Q ss_pred EEEEecccchHHHHHHHHhcCCCC-----ceEEEEe-e------------------ccCCCcHHHHHHHHhcCCC
Q psy8747 98 KLVFCSGKVYYDLIKARNDNNLGD-----KIAVVRV-E------------------QISPFPFDLVKKECLRYPN 148 (214)
Q Consensus 98 rvvlCSGKvyydL~~~r~~~~~~~-----~vAIvRi-E------------------QLyPfP~~~l~~~l~~y~n 148 (214)
++|+|||+-+.++....++.+..+ |=|.|.. + .-.++|.+.++++++...+
T Consensus 33 ~~vi~TgR~~~~~~~~~~~lg~~~~~I~~NGa~I~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~il~~~~~ 107 (225)
T TIGR02461 33 PIVFVSSKTRAEQEYYREELGVEPPFIVENGGAIFIPRGYFPFPVGAGREVGNYEVIELGKPVAKIRAALKEAEN 107 (225)
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCCcEEEcCCcEEEecCccccccccccccCCCeEEEEcCCCHHHHHHHHHHHHH
Confidence 699999999999998887776522 1123333 1 1268999999988875443
No 52
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=28.28 E-value=1.3e+02 Score=26.04 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=18.0
Q ss_pred EEEEecccchHHHHHHHHhcCC
Q psy8747 98 KLVFCSGKVYYDLIKARNDNNL 119 (214)
Q Consensus 98 rvvlCSGKvyydL~~~r~~~~~ 119 (214)
++++|||+-+..+...-++.+.
T Consensus 39 ~~~iaTgR~~~~~~~~~~~l~l 60 (273)
T PRK00192 39 PVIPCTSKTAAEVEVLRKELGL 60 (273)
T ss_pred EEEEEcCCCHHHHHHHHHHcCC
Confidence 7999999999888777766654
No 53
>KOG4748|consensus
Probab=27.28 E-value=41 Score=32.14 Aligned_cols=18 Identities=28% Similarity=0.713 Sum_probs=15.4
Q ss_pred HHHHHHhcCCCCcEEEec
Q psy8747 138 LVKKECLRYPNAKVQWVQ 155 (214)
Q Consensus 138 ~l~~~l~~y~na~~vW~Q 155 (214)
-|++.+.+||+||++|-=
T Consensus 165 ~Ir~tM~kyP~AeWIWWl 182 (364)
T KOG4748|consen 165 AIRQTMLKYPDAEWIWWL 182 (364)
T ss_pred HHHHHHHHCCCCcEEEEe
Confidence 589999999999988853
No 54
>PF09043 Lys-AminoMut_A: D-Lysine 5,6-aminomutase alpha subunit; InterPro: IPR015130 This domain is found in proteins involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state. ; PDB: 3KP1_A 3KOW_A 3KOZ_A 3KOY_B 3KOX_A 3KP0_C 1XRS_A.
Probab=27.12 E-value=61 Score=32.07 Aligned_cols=120 Identities=22% Similarity=0.300 Sum_probs=64.9
Q ss_pred cccccEEEEecccchHHHHHHHHh--cCCCCceEEEEee-----ccCCCc----------------------HHHHHHHH
Q psy8747 93 ADSVEKLVFCSGKVYYDLIKARND--NNLGDKIAVVRVE-----QISPFP----------------------FDLVKKEC 143 (214)
Q Consensus 93 ~~~v~rvvlCSGKvyydL~~~r~~--~~~~~~vAIvRiE-----QLyPfP----------------------~~~l~~~l 143 (214)
+.-+..||+.||.+|=|+.+.|.. .|. |-||+||-= ..-|+- -|++.+++
T Consensus 145 p~P~iy~iVAtG~iyeDi~qaraAA~~GA-D~IaVIRttgQSllDyvp~GaT~eG~GGt~aTqenfR~mRkALD~v~~Ev 223 (509)
T PF09043_consen 145 PKPVIYVIVATGNIYEDIRQARAAARQGA-DIIAVIRTTGQSLLDYVPEGATTEGFGGTYATQENFRIMRKALDEVEEEV 223 (509)
T ss_dssp CSSEEEEEE-SS-HHHHHHHHHHHHHTT--SEEEE-BSTTGGG-SS-B-S--S--TTSB--BHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEecCchHHHHHHHHHHHHcCC-CEEEEecccchhhhccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHHHh
Confidence 456889999999999999999965 475 789999942 223332 35677788
Q ss_pred hcCCCC-cEEE--e--------ccCcCCCC---------------cccchHHHHHhhhCC-CCceeEecCCCCCCCCCCC
Q psy8747 144 LRYPNA-KVQW--V--------QEEHKNQG---------------AWTYVQPRFNTTVNG-QRKMTYVGRPTAASPATGS 196 (214)
Q Consensus 144 ~~y~na-~~vW--~--------QEEP~NmG---------------AW~~v~~~l~~~~~~-~~~l~yvGRp~saspAtG~ 196 (214)
-+|-|. ..+= | -+|--||= --+||..++.+.+.. -.-+.--|-...-+||-..
T Consensus 224 GRyI~l~nY~SGlcmPEIA~m~A~Erld~mlnD~~YgILfRdINm~RtfvDq~~sr~I~a~AgiiintGedNyltTAdA~ 303 (509)
T PF09043_consen 224 GRYIRLHNYCSGLCMPEIAAMGAEERLDMMLNDAMYGILFRDINMQRTFVDQYFSRKINAFAGIIINTGEDNYLTTADAW 303 (509)
T ss_dssp TS--EEEEE--STTHHHHHHHHHHCT-SEEE--CCHHHHHH-B-HHHHHHHHHHHHHHHHHTT-EEE--CHCCHCCCHCT
T ss_pred CCeeeeeccccccccHHHHHHHHHhhhhhhhcchhhcceecccchhhhHHHHHHHHHHHhhcCeEEecCchhhhhhHHHH
Confidence 888664 2110 1 12222220 012333333333211 0113445556666777777
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy8747 197 KMQHVKELENLLADFMT 213 (214)
Q Consensus 197 ~~~H~~eq~~li~~Af~ 213 (214)
-..|..--+++|++.|+
T Consensus 304 e~ahtvlasq~iNe~fa 320 (509)
T PF09043_consen 304 EVAHTVLASQFINEQFA 320 (509)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888887775
No 55
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=24.69 E-value=2.9e+02 Score=26.54 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=42.9
Q ss_pred EEE-EecccchHHHHHHHHhcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCcEEEeccCcCCCCcc
Q psy8747 98 KLV-FCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAW 164 (214)
Q Consensus 98 rvv-lCSGKvyydL~~~r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~~vW~QEEP~NmGAW 164 (214)
||+ +-.|+.-.-+.+--+..+. ++-.+..|.=-||+-+++.+.|++-|+++.+-++------|.-
T Consensus 82 kVLv~~nG~FG~R~~~ia~~~g~--~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvl 147 (383)
T COG0075 82 KVLVVVNGKFGERFAEIAERYGA--EVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVL 147 (383)
T ss_pred eEEEEeCChHHHHHHHHHHHhCC--ceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCccccc
Confidence 555 4556544433333333454 6999999999999999999999999998655444322333433
No 56
>PRK12754 transketolase; Reviewed
Probab=23.05 E-value=6.2e+02 Score=25.95 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=66.6
Q ss_pred CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCc-ccccCCCCCceEcccCCCccccCcccccEEEE
Q psy8747 23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSS-FDDMIEGTEFLRVIPDDSISERKADSVEKLVF 101 (214)
Q Consensus 23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~-l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvl 101 (214)
-||.|..|+.+...-.+++.-+.. ...|..|-.++.=+-.....+. ..+|..|+ .||.+.+ .+-+-+|+
T Consensus 486 Pn~~V~~PaD~~E~~~~~~~a~~~-~~gP~yirl~R~~~p~~~~~~~~~~~~~~G~---~vl~~~~------~~~dv~ii 555 (663)
T PRK12754 486 PNMSTWRPCDQVESAVAWKYGVER-QDGPTALILSRQNLAQQERTEEQLANIARGG---YVLKDCA------GQPELIFI 555 (663)
T ss_pred CCcEEecCCCHHHHHHHHHHHHhC-CCCCEEEEeCCCCCCCCCCccchhhhcccCc---EEEEecC------CCCCEEEE
Confidence 499999999999998888775543 3468777666543221111111 23454442 4555431 11135899
Q ss_pred ecccchHHHHHHHHh---cCCCCceEEEEeeccCCCcHHH
Q psy8747 102 CSGKVYYDLIKARND---NNLGDKIAVVRVEQISPFPFDL 138 (214)
Q Consensus 102 CSGKvyydL~~~r~~---~~~~~~vAIvRiEQLyPfP~~~ 138 (214)
+||-....-++..+. .|+ ++.+|-+=-+=||..+.
T Consensus 556 atGs~v~~Al~Aa~~L~~~Gi--~~~Vvs~~s~kp~d~q~ 593 (663)
T PRK12754 556 ATGSEVELAVAAYEKLTAEGV--KARVVSMPSTDAFDKQD 593 (663)
T ss_pred EECHHHHHHHHHHHHHHhhCC--CcEEEEcCccCcCCCCC
Confidence 999987777666543 354 68999999999998873
No 57
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=22.86 E-value=2.5e+02 Score=23.82 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=34.1
Q ss_pred EEEEecccchHHHHHHHHhcCCCCce-----EEEEee--c---cCCCcHHHHHHHHhcCC
Q psy8747 98 KLVFCSGKVYYDLIKARNDNNLGDKI-----AVVRVE--Q---ISPFPFDLVKKECLRYP 147 (214)
Q Consensus 98 rvvlCSGKvyydL~~~r~~~~~~~~v-----AIvRiE--Q---LyPfP~~~l~~~l~~y~ 147 (214)
++++|||.-|..+...-++.+....+ |.|... + -.|||.+.+.++++-..
T Consensus 34 ~~~iaTGR~~~~~~~~~~~~~~~~~~I~~NGa~i~~~~~~~i~~~~i~~~~~~~i~~~~~ 93 (256)
T TIGR00099 34 KVVLATGRPYKEVKNILKELGLDTPFITANGAAVIDDQGEILYKKPLDLDLVEEILNFLK 93 (256)
T ss_pred eEEEEeCCCHHHHHHHHHHcCCCCCEEEcCCcEEECCCCCEEeecCCCHHHHHHHHHHHH
Confidence 79999999999887766665542122 334322 2 37999999988877543
No 58
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=21.72 E-value=46 Score=26.43 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=39.4
Q ss_pred CCCCceEEeCCcccccCCCCCC----cccccCCCCCceEcccCCCccccCcccccEEEEecccc-----hHHHHHHHHhc
Q psy8747 47 PFRKPLVLMTPKSLLRHPEAKS----SFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKV-----YYDLIKARNDN 117 (214)
Q Consensus 47 ~~rKPLIv~tPKSLLR~~~a~S----~l~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvlCSGKv-----yydL~~~r~~~ 117 (214)
.|+.++||+.-...-......| ++++++.. .|.+++.. +++-||+-||+- =-++.+...+.
T Consensus 16 ~y~~~viv~p~~~~~w~~~~~s~~~~~~~~l~~~-~l~~ll~~---------~peivliGTG~~~~~~~~~~~~~~l~~~ 85 (117)
T cd05126 16 TYEHDIVVYPDGSRARRWKELSKKTGTSHGLQPE-ELEELLEE---------GVEVIVIGTGQSGALKVPPETVEKLEKR 85 (117)
T ss_pred EEcCCEEEeCCccccccccccccccCCcccCCHH-HHHHHHhc---------CCCEEEEcCCCCccccCCHHHHHHHHhc
Confidence 3667888776644446666666 77777664 48887753 244899999973 22454544444
Q ss_pred CC
Q psy8747 118 NL 119 (214)
Q Consensus 118 ~~ 119 (214)
|+
T Consensus 86 Gi 87 (117)
T cd05126 86 GV 87 (117)
T ss_pred CC
Confidence 43
No 59
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.08 E-value=1.4e+02 Score=25.82 Aligned_cols=49 Identities=20% Similarity=0.330 Sum_probs=33.2
Q ss_pred EEEEecccchHHHHHHHHhcCCCC-ce-----EEEE-eec----------cCCCcHHHHHHHHhcC
Q psy8747 98 KLVFCSGKVYYDLIKARNDNNLGD-KI-----AVVR-VEQ----------ISPFPFDLVKKECLRY 146 (214)
Q Consensus 98 rvvlCSGKvyydL~~~r~~~~~~~-~v-----AIvR-iEQ----------LyPfP~~~l~~~l~~y 146 (214)
+|++|||+-|+.+....++-+... .+ |+|. -.+ -.|+|.+.+.++++..
T Consensus 42 ~~viaTGR~~~~i~~~~~~l~~~~~~~I~~NGa~I~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~ 107 (271)
T PRK03669 42 PVILCSSKTAAEMLPLQQTLGLQGLPLIAENGAVIQLDEQWQDHPDFPRIISGISHGEIRQVLNTL 107 (271)
T ss_pred eEEEEcCCCHHHHHHHHHHhCCCCCcEEEeCCCEEEecCcccCCCCceEeecCCCHHHHHHHHHHH
Confidence 699999999999988877766421 11 2332 211 2388999888888753
Done!