RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8747
(214 letters)
>gnl|CDD|236499 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component;
Reviewed.
Length = 924
Score = 269 bits (690), Expect = 7e-85
Identities = 93/181 (51%), Positives = 120/181 (66%), Gaps = 5/181 (2%)
Query: 31 TTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISE 90
TTPA FH+LRRQ PFRKPLV+MTPKSLLRHP A SS +++ EG+ F VI D I E
Sbjct: 745 TTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGS-FQPVIGD--IDE 801
Query: 91 RKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAK 150
V+++V CSGKVYYDL++AR + D +A+VR+EQ+ PFP + + E +YPNAK
Sbjct: 802 LDPKKVKRVVLCSGKVYYDLLEARRKRGIDD-VAIVRIEQLYPFPHEELAAELAKYPNAK 860
Query: 151 -VQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLA 209
V W QEE KNQGAW ++Q + +K+ Y GRP +ASPA G H K+ E L+
Sbjct: 861 EVVWCQEEPKNQGAWYFIQHHLEEVLPEGQKLRYAGRPASASPAVGYMSLHKKQQEALVE 920
Query: 210 D 210
D
Sbjct: 921 D 921
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase
(E1) component, and related enzymes [Energy production
and conversion].
Length = 906
Score = 237 bits (606), Expect = 4e-73
Identities = 87/181 (48%), Positives = 112/181 (61%), Gaps = 6/181 (3%)
Query: 31 TTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISE 90
+TPA FH+LRRQ FRKPL++MTPKSLLRH A SS +++ EGT F V+ D
Sbjct: 727 STPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEELTEGT-FQPVLEDIDEL- 784
Query: 91 RKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAK 150
V+++V CSGKVYYDL++ R + D +A+VR+EQ+ PFP + +YPN K
Sbjct: 785 --DPKVKRVVLCSGKVYYDLLEQREKDGRDD-VAIVRIEQLYPFPAKALAALLAKYPNVK 841
Query: 151 -VQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLA 209
W QEE KNQGAW Y+QP + K+ Y GRP +ASPA GS H K+ E LL
Sbjct: 842 EFVWCQEEPKNQGAWYYIQPHLEEVLPEGDKLRYAGRPASASPAVGSMSVHQKQQEKLLE 901
Query: 210 D 210
D
Sbjct: 902 D 902
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 208 bits (532), Expect = 4e-62
Identities = 79/181 (43%), Positives = 106/181 (58%), Gaps = 5/181 (2%)
Query: 31 TTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISE 90
+TPAN FH+LRRQ R+PLV+ TPKS+LR A S +D EG F VI D ++ +
Sbjct: 1048 STPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDVEDFTEGK-FRPVIDDPTVDD 1106
Query: 91 RKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAK 150
V +++ CSGK+YYDL R + D A+VRVEQ+ P P +++ RYPNA
Sbjct: 1107 --GAKVRRVLLCSGKLYYDLAARREKDGR-DDTAIVRVEQLYPLPRAELREALARYPNAT 1163
Query: 151 -VQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLA 209
V WVQEE NQGAW ++ + R++ V RP +ASPATGS H E + LL
Sbjct: 1164 EVVWVQEEPANQGAWPFMALNLPELLPDGRRLRRVSRPASASPATGSAKVHAVEQQELLD 1223
Query: 210 D 210
+
Sbjct: 1224 E 1224
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component.
The 2-oxoglutarate dehydrogenase complex consists of
this thiamine pyrophosphate-binding subunit (E1),
dihydrolipoamide succinyltransferase (E2), and lipoamide
dehydrogenase (E3). The E1 ortholog from Corynebacterium
glutamicum is unusual in having an N-terminal extension
that resembles the dihydrolipoamide succinyltransferase
(E2) component of 2-oxoglutarate dehydrogenase [Energy
metabolism, TCA cycle].
Length = 929
Score = 186 bits (475), Expect = 9e-55
Identities = 88/183 (48%), Positives = 114/183 (62%), Gaps = 5/183 (2%)
Query: 31 TTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIP--DDSI 88
TTPA +FHILRRQ R+PLV+M+PKSLLRHP A SS +++ EGT F VI ++S
Sbjct: 747 TTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGT-FQPVIGEIEESG 805
Query: 89 SERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPN 148
+ V++LV CSGKVYYDL + R N D +A+VR+EQ+ PFP VK+ +YPN
Sbjct: 806 LSLDPEGVKRLVLCSGKVYYDLHEQRRKNGQKD-VAIVRIEQLYPFPHKAVKEVLQQYPN 864
Query: 149 AK-VQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENL 207
K + W QEE N GAW Y QP + + Y GRP +ASPA G H K+ ++L
Sbjct: 865 LKEIVWCQEEPLNMGAWYYSQPHLREVIPEGVSVRYAGRPASASPAVGYMSLHQKQQQDL 924
Query: 208 LAD 210
L D
Sbjct: 925 LND 927
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain.
This family includes transketolase enzymes, pyruvate
dehydrogenases, and branched chain alpha-keto acid
decarboxylases.
Length = 172
Score = 42.5 bits (101), Expect = 3e-05
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 31 TTPANLFHILRRQIALPFRKPLVLMTPKSLLRHP 64
+ A +LR I P+VL P+ LLRH
Sbjct: 141 SDAAETKGLLRAAIEDDG--PVVLRLPRQLLRHK 172
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain.
Transketolase (TK) catalyzes the reversible transfer of
a two-carbon ketol unit from xylulose 5-phosphate to an
aldose receptor, such as ribose 5-phosphate, to form
sedoheptulose 7-phosphate and glyceraldehyde 3-
phosphate. This enzyme, together with transaldolase,
provides a link between the glycolytic and
pentose-phosphate pathways. TK requires thiamine
pyrophosphate as a cofactor. In most sources where TK
has been purified, it is a homodimer of approximately 70
Kd subunits. TK sequences from a variety of eukaryotic
and prokaryotic sources show that the enzyme has been
evolutionarily conserved. In the peroxisomes of
methylotrophic yeast Hansenula polymorpha, there is a
highly related enzyme, dihydroxy-acetone synthase (DHAS)
(also known as formaldehyde transketolase), which
exhibits a very unusual specificity by including
formaldehyde amongst its substrates.
Length = 136
Score = 35.5 bits (83), Expect = 0.005
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 31 TTPANLFHILRRQIALPFRKPLVLMTPKSLLR 62
+ PA +LR I ++ + KSL R
Sbjct: 106 SDPAEAKGLLRAAIRDD-GPVVIRLERKSLYR 136
>gnl|CDD|223746 COG0674, PorA, Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, alpha subunit
[Energy production and conversion].
Length = 365
Score = 34.2 bits (79), Expect = 0.042
Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 92 KADSVEKLVFCSGKVYYDLIKARNDNNL--GDKIAVVRVEQISPFPFDLVKK 141
+ E ++ G +A D G+K+ +++V + PFP + +++
Sbjct: 253 GYEDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIRE 304
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 29.9 bits (68), Expect = 1.2
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 110 LIKARNDNNLGDKIAVVRVEQISPFPFDLVKK-ECLRYPNAKVQWVQEEHKNQ 161
L A L D+IA +R+EQ F++ ++ + L P+A + ++ HK++
Sbjct: 349 LPSADLIEGLADRIADLRLEQ-----FEINQQRDALFQPDAYIDKLEAGHKSE 396
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase
inhibitor.
Length = 587
Score = 29.5 bits (66), Expect = 1.7
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 2 SIPKAHRYPTMTLRDGAQRDKFPPVSVG---------TTTPANLFHILRRQIALPFRKPL 52
S HR PT + + +FP + V T + ++L HI F K L
Sbjct: 64 SPKSLHRKPTQAISKTCSKTRFPNLCVDSLLDFPGSLTASESDLIHISFNMTLQHFSKAL 123
Query: 53 VLMTPKSLLR-HPEAKSSFDDMIEGTEFLRVIPDDSI 88
L + S ++ P +S++D +E + DDS+
Sbjct: 124 YLSSTISYVQMPPRVRSAYDSCLE-------LLDDSV 153
>gnl|CDD|235268 PRK04282, PRK04282, exosome complex RNA-binding protein Rrp42;
Provisional.
Length = 271
Score = 26.8 bits (60), Expect = 8.8
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 78 EFLRVIPDDSISERKADSVEKLVFCSGK----VYYDLIKARNDNNLGD 121
E RV+ D I E KA +EKLV GK V+ D+ +D NL D
Sbjct: 106 ELARVV-DRGIRESKAIDLEKLVIEPGKKVWVVFIDVYVLDHDGNLLD 152
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.399
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,004,514
Number of extensions: 1012294
Number of successful extensions: 716
Number of sequences better than 10.0: 1
Number of HSP's gapped: 702
Number of HSP's successfully gapped: 16
Length of query: 214
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 121
Effective length of database: 6,812,680
Effective search space: 824334280
Effective search space used: 824334280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)