RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8747
         (214 letters)



>d1lwuc1 d.171.1.1 (C:138-399) Fibrinogen C-terminal domains {Sea
           lamprey (Petromyzon marinus), gamma [TaxId: 7757]}
          Length = 262

 Score = 26.7 bits (58), Expect = 2.1
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 147 PNAKVQWVQEEHKNQGAWTYVQPRFNTTVNGQRKM 181
              +   V  E +N   WT +Q R + +VN  R  
Sbjct: 37  KAKQPFLVFCEIENGNGWTVIQHRHDGSVNFTRDW 71


>d1fzda_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo
           sapiens), fibrinogen-420, alpha-E [TaxId: 9606]}
          Length = 197

 Score = 26.4 bits (57), Expect = 2.6
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 162 GAWTYVQPRFNTTVNGQR 179
           G W  +Q R + ++N  R
Sbjct: 1   GGWLLIQQRMDGSLNFNR 18


>d1fida_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo
           sapiens), gamma [TaxId: 9606]}
          Length = 259

 Score = 25.9 bits (56), Expect = 3.6
 Identities = 5/22 (22%), Positives = 10/22 (45%)

Query: 162 GAWTYVQPRFNTTVNGQRKMTY 183
             WT  Q R + +V+ ++    
Sbjct: 46  NGWTVFQKRLDGSVDFKKNWIQ 67


>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus
          [TaxId: 10891]}
          Length = 1264

 Score = 25.7 bits (56), Expect = 5.0
 Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 6/46 (13%)

Query: 31 TTPANLFHILRRQIA------LPFRKPLVLMTPKSLLRHPEAKSSF 70
             A  F +  R         +PF    +L  P ++   P   S +
Sbjct: 27 EDAAKAFSMFTRSDVYKALDEIPFSDDAMLPIPPTIYTKPSHDSYY 72


>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
           40051]}
          Length = 845

 Score = 25.6 bits (56), Expect = 5.3
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 78  EFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLG---DKIAVVRVEQISPF 134
           ++L  + +  +      + E L F  G+  YD    R D   G   +  A + VE   P 
Sbjct: 348 DYLLYMYNTRVQVNYGPTGEPLDFQIGRNQYDCNVFRADFATGTGYNGWATIDVEYRDPA 407

Query: 135 PFDLVKK 141
           P+   ++
Sbjct: 408 PYVHAQR 414


>d1re3b1 d.171.1.1 (B:200-458) Fibrinogen C-terminal domains {Human
           (Homo sapiens), beta [TaxId: 9606]}
          Length = 259

 Score = 25.2 bits (54), Expect = 6.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 162 GAWTYVQPRFNTTVNGQRKM 181
           G WT +Q R + +V+  RK 
Sbjct: 48  GGWTVIQNRQDGSVDFGRKW 67


>d1lwub1 d.171.1.1 (B:219-477) Fibrinogen C-terminal domains {Sea
           lamprey (Petromyzon marinus), beta [TaxId: 7757]}
          Length = 259

 Score = 25.3 bits (54), Expect = 6.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 162 GAWTYVQPRFNTTVNGQRKM 181
           G WT VQ R + + N  R  
Sbjct: 50  GGWTVVQNRVDGSSNFARDW 69


>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 302

 Score = 24.6 bits (52), Expect = 9.8
 Identities = 5/53 (9%), Positives = 14/53 (26%), Gaps = 4/53 (7%)

Query: 62  RHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKAR 114
              +A    D    G   + +     +   +  +  K        + D +  +
Sbjct: 244 DGHDALVFCD----GRREMLIPAGSRLEVTRCVTSVKWARLDSAPFTDRLVRK 292


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 796,087
Number of extensions: 35926
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 8
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)