BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8748
(2004 letters)
Database: pdbaa
65,211 sequences; 15,674,573 total letters
Searching..................................................done
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 352 bits (903), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 162/343 (47%), Positives = 237/343 (69%), Gaps = 3/343 (0%)
Query: 1637 LKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVN 1696
L+ + +L++E QL ++ ++ + AD L +T ++ ++++ +++L+GH+ K+
Sbjct: 11 LQSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIY 70
Query: 1697 SVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDN 1756
++H+ DSR VS S DGKLIIWD++T NK IPLRS+WVM+ A+A SGN+VACGG+DN
Sbjct: 71 AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 130
Query: 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRI 1816
+C++Y+L R+ G +V REL G+ G+LS CRF+DD ++T SGD W++ET +
Sbjct: 131 ICSIYNLKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET-GQQ 187
Query: 1817 HEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHP 1876
H GDV+S+SL+PD + FV+G+ D S KLWD RE C QTF GHE+D+N++CF P
Sbjct: 188 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 247
Query: 1877 SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHV 1936
+G AFATGS+D T RLFD+RADQ++ TY N G TS + S SGR + G DD N +V
Sbjct: 248 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 307
Query: 1937 WDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
WD LK GVL+GH+NRV+ + ++ +GMA+ T SWD F+K+W
Sbjct: 308 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In
Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 351 bits (900), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 161/337 (47%), Positives = 234/337 (69%), Gaps = 3/337 (0%)
Query: 1643 ELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG 1702
+L++E QL ++ ++ + AD L +T ++ ++++ +++L+GH+ K+ ++H+
Sbjct: 6 QLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT 65
Query: 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762
DSR VS S DGKLIIWD++T NK IPLRS+WVM+ A+A SGN+VACGG+DN+C++Y+
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA 1822
L R+ G +V REL G+ G+LS CRF+DD ++T SGD W++ET +
Sbjct: 126 LKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET-GQQTTTFTG 182
Query: 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFA 1882
H GDV+S+SL+PD + FV+G+ D S KLWD RE C QTF GHE+D+N++CF P+G AFA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 1883 TGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT 1942
TGS+D T RLFD+RADQ++ TY N G TS + S SGR + G DD N +VWD LK
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 1943 THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
GVL+GH+NRV+ + ++ +GMA+ T SWD F+K+W
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And
Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In
Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
pdb|4KFM|B Chain B, Crystal Structure Of The G Protein-gated Inward Rectifier K+
Channel Girk2 (kir3.2) In Complex With The Beta-gamma G
Protein Subunits
Length = 340
Score = 351 bits (900), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 161/337 (47%), Positives = 234/337 (69%), Gaps = 3/337 (0%)
Query: 1643 ELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG 1702
+L++E QL ++ ++ + AD L +T ++ ++++ +++L+GH+ K+ ++H+
Sbjct: 6 QLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT 65
Query: 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762
DSR VS S DGKLIIWD++T NK IPLRS+WVM+ A+A SGN+VACGG+DN+C++Y+
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA 1822
L R+ G +V REL G+ G+LS CRF+DD ++T SGD W++ET +
Sbjct: 126 LKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET-GQQTTTFTG 182
Query: 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFA 1882
H GDV+S+SL+PD + FV+G+ D S KLWD RE C QTF GHE+D+N++CF P+G AFA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 1883 TGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT 1942
TGS+D T RLFD+RADQ++ TY N G TS + S SGR + G DD N +VWD LK
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 1943 THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
GVL+GH+NRV+ + ++ +GMA+ T SWD F+K+W
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The
Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 350 bits (897), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 160/337 (47%), Positives = 234/337 (69%), Gaps = 3/337 (0%)
Query: 1643 ELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG 1702
+L++E QL ++ ++ + AD L +T ++ ++++ +++L+GH+ K+ ++H+
Sbjct: 6 QLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT 65
Query: 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762
DSR +S S DGKLIIWD++T NK IPLRS+WVM+ A+A SGN+VACGG+DN+C++Y+
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA 1822
L R+ G +V REL G+ G+LS CRF+DD ++T SGD W++ET +
Sbjct: 126 LKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET-GQQTTTFTG 182
Query: 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFA 1882
H GDV+S+SL+PD + FV+G+ D S KLWD RE C QTF GHE+D+N++CF P+G AFA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 1883 TGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT 1942
TGS+D T RLFD+RADQ++ TY N G TS + S SGR + G DD N +VWD LK
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 1943 THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
GVL+GH+NRV+ + ++ +GMA+ T SWD F+K+W
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 350 bits (897), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 160/337 (47%), Positives = 234/337 (69%), Gaps = 3/337 (0%)
Query: 1643 ELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG 1702
+L++E QL ++ ++ + AD L +T ++ ++++ +++L+GH+ K+ ++H+
Sbjct: 6 QLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT 65
Query: 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762
DSR +S S DGKLIIWD++T NK IPLRS+WVM+ A+A SGN+VACGG+DN+C++Y+
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA 1822
L R+ G +V REL G+ G+LS CRF+DD ++T SGD W++ET +
Sbjct: 126 LKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET-GQQTTTFTG 182
Query: 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFA 1882
H GDV+S+SL+PD + FV+G+ D S KLWD RE C QTF GHE+D+N++CF P+G AFA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 1883 TGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT 1942
TGS+D T RLFD+RADQ++ TY N G TS + S SGR + G DD N +VWD LK
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 1943 THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
GVL+GH+NRV+ + ++ +GMA+ T SWD F+K+W
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 272 bits (696), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/341 (40%), Positives = 206/341 (60%), Gaps = 4/341 (1%)
Query: 1642 AELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYS 1701
A LK E L K +EE+AK D +L V + + + +++LKGH NKV + +
Sbjct: 14 ASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWC 73
Query: 1702 GDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761
D R VS S DGK+I+WD++T NK + + WVM+ A+A SG +ACGG+DN C+VY
Sbjct: 74 KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133
Query: 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVA 1820
L + A + + + +LS+C F + D +LT SGD W++E+GQ +
Sbjct: 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF- 192
Query: 1821 QAHIGDVVSISLSPD--GQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG 1878
H DV+ + L+P G FV+G DK +WD R +CVQ F HE+DVNSV ++PSG
Sbjct: 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG 252
Query: 1879 LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938
AFA+GS+D T RL+D+RAD+++A Y + G +S S SGR +F G +D ++VWD
Sbjct: 253 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWD 312
Query: 1939 LLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
+LK + +L GHENRV+++ +SP+G A + SWD ++VW
Sbjct: 313 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 236 bits (602), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 192/320 (60%), Gaps = 18/320 (5%)
Query: 1682 LMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVA 1741
L+ ++L+GH KV S+ ++ + VS S DG+LI+W+ T KT I L WVM A
Sbjct: 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECA 115
Query: 1742 FAQSGNFVACGGMDNMCTVYDLNNR-DSTGAAKVIRELLGYEGFLSSCRFIDD--TTLLT 1798
FA +G VACGG+D+ C++++L+++ D G V R L G++G+ SSC+++ D T L+T
Sbjct: 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175
Query: 1799 GSGDMKIVTWNLETGQRI----HEVAQAHIGDVVSISL-SPDGQYFVTGSVDKSCKLWDF 1853
GSGD V W++ TGQRI E H DV+S+S+ S + F++GS D + +LWD
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235
Query: 1854 R-EKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY-LPPNKNS 1911
R + V+T+ GHE D+NSV F P G F TGS+D T RLFD+R Q+ Y P++N
Sbjct: 236 RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND 295
Query: 1912 G----FTSCAVSSSGRYIFCGSDDNNVHVWDLL---KTTHNGVL-SGHENRVTSISLSPN 1963
TS A S SGR +F G + + +VWD L + G L + HE R++ + LS +
Sbjct: 296 NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD 355
Query: 1964 GMALVTSSWDQFVKVWQESN 1983
G AL T SWD+ +K+W S
Sbjct: 356 GSALCTGSWDKNLKIWAFSG 375
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 59/183 (32%)
Query: 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQV-----------IPLRS 1734
++ GH +NSV + D + +GS DG ++D TG++ QV +P+
Sbjct: 243 RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI-- 300
Query: 1735 AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT 1794
V SVAF+ SG + G + C V+D
Sbjct: 301 --VTSVAFSISGRLLFAGYSNGDCYVWD-------------------------------- 326
Query: 1795 TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR 1854
TLL +M + NL T Q HE G + + LS DG TGS DK+ K+W F
Sbjct: 327 TLLA---EMVL---NLGTLQNSHE------GRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
Query: 1855 EKK 1857
+
Sbjct: 375 GHR 377
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 153/321 (47%), Gaps = 21/321 (6%)
Query: 1672 ASMPDAPKVKLMPK-----KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK 1726
AS D VKL + ++L GH + V V +S D + S S D + +W+ G
Sbjct: 73 ASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQL 131
Query: 1727 TQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786
Q + S+ V VAF+ G +A D +++ N ++++ L G+ +
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVW 184
Query: 1787 SCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845
F D T+ + S D + WN GQ + + H V ++ SPDGQ + S D
Sbjct: 185 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDD 242
Query: 1846 KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL 1905
K+ KLW+ R + +QT GH + VN V F P G A+ S+DKT +L++ R Q + T
Sbjct: 243 KTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTL- 299
Query: 1906 PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM 1965
+S A S G+ I SDD V +W+ H L+GH + V ++ SP+G
Sbjct: 300 -TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQ 357
Query: 1966 ALVTSSWDQFVKVWQESNTIV 1986
+ ++S D+ VK+W + ++
Sbjct: 358 TIASASDDKTVKLWNRNGQLL 378
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 151/318 (47%), Gaps = 29/318 (9%)
Query: 1672 ASMPDAPKVKLMPK-----KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK 1726
AS D VKL + ++L GH + V V +S D + S S D + +W+ G
Sbjct: 278 ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQH 336
Query: 1727 TQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786
Q + S+ V VAF+ G +A D +++ N ++++ L G+ +
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVR 389
Query: 1787 SCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845
F D T+ + S D + WN GQ + + H V ++ SPD Q + S D
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVWGVAFSPDDQTIASASDD 447
Query: 1846 KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL 1905
K+ KLW+ R + +QT GH + V V F P G A+ S+DKT +L++ R Q + T
Sbjct: 448 KTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL- 504
Query: 1906 PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD----LLKTTHNGVLSGHENRVTSISLS 1961
+S A S G+ I SDD V +W+ LL+T L+GH + V ++ S
Sbjct: 505 -TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-----LTGHSSSVWGVAFS 558
Query: 1962 PNGMALVTSSWDQFVKVW 1979
P+G + ++S D+ VK+W
Sbjct: 559 PDGQTIASASSDKTVKLW 576
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 151/318 (47%), Gaps = 29/318 (9%)
Query: 1672 ASMPDAPKVKLMPK-----KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK 1726
AS D VKL + ++L GH + V V +S D + S S D + +W+ G
Sbjct: 32 ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQL 90
Query: 1727 TQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786
Q + S+ V VAF+ G +A D +++ N ++++ L G+ +
Sbjct: 91 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVW 143
Query: 1787 SCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845
F D T+ + S D + WN GQ + + H V ++ SPDGQ + S D
Sbjct: 144 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVWGVAFSPDGQTIASASDD 201
Query: 1846 KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL 1905
K+ KLW+ R + +QT GH + V V F P G A+ S+DKT +L++ R Q + T
Sbjct: 202 KTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL- 258
Query: 1906 PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD----LLKTTHNGVLSGHENRVTSISLS 1961
+S A G+ I SDD V +W+ LL+T L+GH + V ++ S
Sbjct: 259 -TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQT-----LTGHSSSVWGVAFS 312
Query: 1962 PNGMALVTSSWDQFVKVW 1979
P+G + ++S D+ VK+W
Sbjct: 313 PDGQTIASASDDKTVKLW 330
Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 153/325 (47%), Gaps = 29/325 (8%)
Query: 1672 ASMPDAPKVKLMPK-----KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK 1726
AS D VKL + ++L GH + V V +S D + S S D + +W+ G
Sbjct: 196 ASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQL 254
Query: 1727 TQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786
Q + S+ V VAF G +A D +++ N ++++ L G+ +
Sbjct: 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVW 307
Query: 1787 SCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845
F D T+ + S D + WN GQ + + H V ++ SPDGQ + S D
Sbjct: 308 GVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLT-GHSSSVWGVAFSPDGQTIASASDD 365
Query: 1846 KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL 1905
K+ KLW+ R + +QT GH + V V F P G A+ S+DKT +L++ R Q + T
Sbjct: 366 KTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL- 422
Query: 1906 PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD----LLKTTHNGVLSGHENRVTSISLS 1961
+S A S + I SDD V +W+ LL+T L+GH + V ++ S
Sbjct: 423 -TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQT-----LTGHSSSVRGVAFS 476
Query: 1962 PNGMALVTSSWDQFVKVWQESNTIV 1986
P+G + ++S D+ VK+W + ++
Sbjct: 477 PDGQTIASASDDKTVKLWNRNGQLL 501
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 153/325 (47%), Gaps = 29/325 (8%)
Query: 1672 ASMPDAPKVKLMPK-----KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK 1726
AS D VKL + ++L GH + VN V + D + S S D + +W+ G
Sbjct: 237 ASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQL 295
Query: 1727 TQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786
Q + S+ V VAF+ G +A D +++ N + ++ L G+ +
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-------LQTLTGHSSSVW 348
Query: 1787 SCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845
F D T+ + S D + WN GQ + + H V ++ SPDGQ + S D
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDD 406
Query: 1846 KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL 1905
K+ KLW+ R + +QT GH + V V F P A+ S+DKT +L++ R Q + T
Sbjct: 407 KTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTL- 463
Query: 1906 PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD----LLKTTHNGVLSGHENRVTSISLS 1961
+S A S G+ I SDD V +W+ LL+T L+GH + V ++ S
Sbjct: 464 -TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-----LTGHSSSVRGVAFS 517
Query: 1962 PNGMALVTSSWDQFVKVWQESNTIV 1986
P+G + ++S D+ VK+W + ++
Sbjct: 518 PDGQTIASASDDKTVKLWNRNGQLL 542
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 1672 ASMPDAPKVKLMPK-----KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK 1726
AS D VKL + ++L GH + V V +S D + S S D + +W+ G
Sbjct: 319 ASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQL 377
Query: 1727 TQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786
Q + S+ V VAF+ G +A D +++ N ++++ L G+ +
Sbjct: 378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVW 430
Query: 1787 SCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845
F DD T+ + S D + WN GQ + + H V ++ SPDGQ + S D
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDD 488
Query: 1846 KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL 1905
K+ KLW+ R + +QT GH + V V F P G A+ S+DKT +L++ R Q + T
Sbjct: 489 KTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL- 545
Query: 1906 PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938
+S A S G+ I S D V +W+
Sbjct: 546 -TGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 91/170 (53%), Gaps = 13/170 (7%)
Query: 1821 QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLA 1880
+AH V ++ SPDGQ + S DK+ KLW+ R + +QT GH + V V F P G
Sbjct: 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 1881 FATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD-- 1938
A+ S+DKT +L++ R Q + T +S A S G+ I SDD V +W+
Sbjct: 72 IASASDDKTVKLWN-RNGQLLQTL--TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 128
Query: 1939 --LLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIV 1986
LL+T L+GH + V ++ SP+G + ++S D+ VK+W + ++
Sbjct: 129 GQLLQT-----LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL 173
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
Length = 334
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 14/333 (4%)
Query: 1654 KCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLD 1713
K + E A+ T T S P K K +L GH V+SV +S + S S D
Sbjct: 7 KPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSAD 66
Query: 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAK 1773
+ IW + G + I + VA++ N + D ++D++ + K
Sbjct: 67 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS------SGK 120
Query: 1774 VIRELLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832
++ L G+ ++ C F + L+ +GS D + W+++TG+ + + AH V ++
Sbjct: 121 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF 179
Query: 1833 SPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE-ADVNSVCFHPSGLAFATGSEDKTAR 1891
+ DG V+ S D C++WD +C++T + V+ V F P+G + D T +
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 239
Query: 1892 LFDIRADQQIATYLPPNKNSGFTSCAVSS--SGRYIFCGSDDNNVHVWDLLKTTHNGVLS 1949
L+D + + TY +KN + A S G++I GS+DN V++W+L L
Sbjct: 240 LWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Query: 1950 GHENRVTSISLSP--NGMALVTSSWDQFVKVWQ 1980
GH + V S + P N +A D+ +K+W+
Sbjct: 299 GHTDVVISTACHPTENIIASAALENDKTIKLWK 331
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 99
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ + T P + ++ + G I S D +WD L +N V
Sbjct: 160 TGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 262
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 14/333 (4%)
Query: 1654 KCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLD 1713
K + E A+ T T S P K K +L GH V+SV +S + S S D
Sbjct: 9 KPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSAD 68
Query: 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAK 1773
+ IW + G + I + VA++ N + D ++D++ + K
Sbjct: 69 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS------SGK 122
Query: 1774 VIRELLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832
++ L G+ ++ C F + L+ +GS D + W+++TG+ + + AH V ++
Sbjct: 123 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF 181
Query: 1833 SPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE-ADVNSVCFHPSGLAFATGSEDKTAR 1891
+ DG V+ S D C++WD +C++T + V+ V F P+G + D T +
Sbjct: 182 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 241
Query: 1892 LFDIRADQQIATYLPPNKNSGFTSCAVSS--SGRYIFCGSDDNNVHVWDLLKTTHNGVLS 1949
L+D + + TY +KN + A S G++I GS+DN V++W+L L
Sbjct: 242 LWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300
Query: 1950 GHENRVTSISLSP--NGMALVTSSWDQFVKVWQ 1980
GH + V S + P N +A D+ +K+W+
Sbjct: 301 GHTDVVISTACHPTENIIASAALENDKTIKLWK 333
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 101
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ + T P + ++ + G I S D +WD L +N V
Sbjct: 162 TGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 219
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 220 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 264
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 147/316 (46%), Gaps = 14/316 (4%)
Query: 1671 TASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI 1730
T S P K K +L GH V+SV +S + S S D + IW + G + I
Sbjct: 19 TQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 78
Query: 1731 PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790
+ VA++ N + D ++D++ + K ++ L G+ ++ C F
Sbjct: 79 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS------SGKCLKTLKGHSNYVFCCNF 132
Query: 1791 IDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849
+ L+ +GS D + W+++TG+ + + AH V ++ + DG V+ S D C+
Sbjct: 133 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 191
Query: 1850 LWDFREKKCVQTFFGHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN 1908
+WD +C++T + V+ V F P+G + D T +L+D + + TY +
Sbjct: 192 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGH 250
Query: 1909 KNSGFTSCAVSS--SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP--NG 1964
KN + A S G++I GS+DN V++W+L L GH + V S + P N
Sbjct: 251 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 310
Query: 1965 MALVTSSWDQFVKVWQ 1980
+A D+ +K+W+
Sbjct: 311 IASAALENDKTIKLWK 326
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 94
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ + T P + ++ + G I S D +WD L +N V
Sbjct: 155 TGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 212
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 213 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 257
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 147/316 (46%), Gaps = 14/316 (4%)
Query: 1671 TASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI 1730
T S P K K +L GH V+SV +S + S S D + IW + G + I
Sbjct: 2 TQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 61
Query: 1731 PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790
+ VA++ N + D ++D++ + K ++ L G+ ++ C F
Sbjct: 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS------SGKCLKTLKGHSNYVFCCNF 115
Query: 1791 IDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849
+ L+ +GS D + W+++TG+ + + AH V ++ + DG V+ S D C+
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 1850 LWDFREKKCVQTFFGHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN 1908
+WD +C++T + V+ V F P+G + D T +L+D + + TY +
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGH 233
Query: 1909 KNSGFTSCAVSS--SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP--NG 1964
KN + A S G++I GS+DN V++W+L L GH + V S + P N
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 293
Query: 1965 MALVTSSWDQFVKVWQ 1980
+A D+ +K+W+
Sbjct: 294 IASAALENDKTIKLWK 309
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 77
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ + T P + ++ + G I S D +WD L +N V
Sbjct: 138 TGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 240
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone
Mark That Supports Euchromatin Maintenance
Length = 318
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 147/316 (46%), Gaps = 14/316 (4%)
Query: 1671 TASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI 1730
T S P K K +L GH V+SV +S + S S D + IW + G + I
Sbjct: 8 TQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 67
Query: 1731 PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790
+ VA++ N + D ++D++ + K ++ L G+ ++ C F
Sbjct: 68 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS------SGKCLKTLKGHSNYVFCCNF 121
Query: 1791 IDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849
+ L+ +GS D + W+++TG+ + + AH V ++ + DG V+ S D C+
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 1850 LWDFREKKCVQTFFGHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN 1908
+WD +C++T + V+ V F P+G + D T +L+D + + TY +
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGH 239
Query: 1909 KNSGFTSCAVSS--SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP--NG 1964
KN + A S G++I GS+DN V++W+L L GH + V S + P N
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 1965 MALVTSSWDQFVKVWQ 1980
+A D+ +K+W+
Sbjct: 300 IASAALENDKTIKLWK 315
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 83
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ + T P + ++ + G I S D +WD L +N V
Sbjct: 144 TGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 246
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-5-
Nitrophenyl]benzamide
Length = 312
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 147/316 (46%), Gaps = 14/316 (4%)
Query: 1671 TASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI 1730
T S P K K +L GH V+SV +S + S S D + IW + G + I
Sbjct: 2 TQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 61
Query: 1731 PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790
+ VA++ N + D ++D++ + K ++ L G+ ++ C F
Sbjct: 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS------SGKCLKTLKGHSNYVFCCNF 115
Query: 1791 IDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849
+ L+ +GS D + W+++TG+ + + AH V ++ + DG V+ S D C+
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 1850 LWDFREKKCVQTFFGHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN 1908
+WD +C++T + V+ V F P+G + D T +L+D + + TY +
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGH 233
Query: 1909 KNSGFTSCAVSS--SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP--NG 1964
KN + A S G++I GS+DN V++W+L L GH + V S + P N
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 293
Query: 1965 MALVTSSWDQFVKVWQ 1980
+A D+ +K+W+
Sbjct: 294 IASAALENDKTIKLWK 309
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 77
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ + T P + ++ + G I S D +WD L +N V
Sbjct: 138 TGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 240
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 148/320 (46%), Gaps = 14/320 (4%)
Query: 1667 LEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK 1726
+ T S P K K +L GH V+SV +S + S S D + IW + G
Sbjct: 3 MGSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 62
Query: 1727 TQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786
+ I + VA++ N + D ++D++ + K ++ L G+ ++
Sbjct: 63 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS------SGKCLKTLKGHSNYVF 116
Query: 1787 SCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845
C F + L+ +GS D + W+++TG+ + + AH V ++ + DG V+ S D
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYD 175
Query: 1846 KSCKLWDFREKKCVQTFFGHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY 1904
C++WD +C++T + V+ V F P+G + D T +L+D + + TY
Sbjct: 176 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 235
Query: 1905 LPPNKNSGFTSCAVSS--SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP 1962
+KN + A S G++I GS+DN V++W+L L GH + V S + P
Sbjct: 236 -TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 294
Query: 1963 --NGMALVTSSWDQFVKVWQ 1980
N +A D+ +K+W+
Sbjct: 295 TENIIASAALENDKTIKLWK 314
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 82
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ + T P + ++ + G I S D +WD L +N V
Sbjct: 143 TGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 200
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 201 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 245
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 147/316 (46%), Gaps = 14/316 (4%)
Query: 1671 TASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI 1730
T S P K K +L GH V+SV +S + S S D + IW + G + I
Sbjct: 3 TQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 62
Query: 1731 PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790
+ VA++ N + D ++D++ + K ++ L G+ ++ C F
Sbjct: 63 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS------SGKCLKTLKGHSNYVFCCNF 116
Query: 1791 IDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849
+ L+ +GS D + W+++TG+ + + AH V ++ + DG V+ S D C+
Sbjct: 117 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 175
Query: 1850 LWDFREKKCVQTFFGHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN 1908
+WD +C++T + V+ V F P+G + D T +L+D + + TY +
Sbjct: 176 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGH 234
Query: 1909 KNSGFTSCAVSS--SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP--NG 1964
KN + A S G++I GS+DN V++W+L L GH + V S + P N
Sbjct: 235 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 294
Query: 1965 MALVTSSWDQFVKVWQ 1980
+A D+ +K+W+
Sbjct: 295 IASAALENDKTIKLWK 310
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 78
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ + T P + ++ + G I S D +WD L +N V
Sbjct: 139 TGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 196
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 197 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 241
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 147/316 (46%), Gaps = 14/316 (4%)
Query: 1671 TASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI 1730
T S P K K +L GH V+SV +S + S S D + IW + G + I
Sbjct: 8 TQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 67
Query: 1731 PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790
+ VA++ N + D ++D++ + K ++ L G+ ++ C F
Sbjct: 68 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS------SGKCLKTLKGHSNYVFCCNF 121
Query: 1791 IDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849
+ L+ +GS D + W+++TG+ + + AH V ++ + DG V+ S D C+
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 1850 LWDFREKKCVQTFFGHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN 1908
+WD +C++T + V+ V F P+G + D T +L+D + + TY +
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGH 239
Query: 1909 KNSGFTSCAVSS--SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP--NG 1964
KN + A S G++I GS+DN V++W+L L GH + V S + P N
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 1965 MALVTSSWDQFVKVWQ 1980
+A D+ +K+W+
Sbjct: 300 IASAALENDKTIKLWK 315
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 83
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ + T P + ++ + G I S D +WD L +N V
Sbjct: 144 TGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 246
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 146/314 (46%), Gaps = 14/314 (4%)
Query: 1673 SMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL 1732
S P K K +L GH V+SV +S + S S D + IW + G + I
Sbjct: 10 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 1733 RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID 1792
+ VA++ N + D ++D++ + K ++ L G+ ++ C F
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVS------SGKCLKTLKGHSNYVFCCNFNP 123
Query: 1793 DTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851
+ L+ +GS D + W+++TG+ + + AH V ++ + DG V+ S D C++W
Sbjct: 124 QSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 1852 DFREKKCVQTFFGHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN 1910
D +C++T + V+ V F P+G + D T +L+D + + TY +KN
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHKN 241
Query: 1911 SGFTSCAVSS--SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP--NGMA 1966
+ A S G++I GS+DN V++W+L L GH + V S + P N +A
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 301
Query: 1967 LVTSSWDQFVKVWQ 1980
D+ +K+W+
Sbjct: 302 SAALENDKTIKLWK 315
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 83
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ + T P + ++ + G I S D +WD L +N V
Sbjct: 144 TGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 246
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 147/315 (46%), Gaps = 16/315 (5%)
Query: 1672 ASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP 1731
S P P L K +L GH V+SV +S + S S D + IW + G + I
Sbjct: 4 GSTPVKPNYAL--KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 61
Query: 1732 LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791
+ VA++ N + D ++D++ + K ++ L G+ ++ C F
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS------SGKCLKTLKGHSNYVFCCNFN 115
Query: 1792 DDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850
+ L+ +GS D + W+++TG+ + + AH V ++ + DG V+ S D C++
Sbjct: 116 PQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174
Query: 1851 WDFREKKCVQTFFGHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNK 1909
WD +C++T + V+ V F P+G + D T +L+D + + TY +K
Sbjct: 175 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHK 233
Query: 1910 NSGFTSCAVSS--SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP--NGM 1965
N + A S G++I GS+DN V++W+L L GH + V S + P N +
Sbjct: 234 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 293
Query: 1966 ALVTSSWDQFVKVWQ 1980
A D+ +K+W+
Sbjct: 294 ASAALENDKTIKLWK 308
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 76
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ + T P + ++ + G I S D +WD L +N V
Sbjct: 137 TGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 194
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 195 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 239
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 145/312 (46%), Gaps = 16/312 (5%)
Query: 1675 PDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS 1734
P P LM +L GH V+SV +S + S S D + IW + G + I
Sbjct: 11 PVKPNYALM--FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 1735 AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT 1794
+ VA++ N + D ++D++ + K ++ L G+ ++ C F +
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVS------SGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 1795 TLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853
L+ +GS D + W+++TG + + AH V ++ + DG V+ S D C++WD
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 1854 REKKCVQTFFGHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912
+C++T + V+ V F P+G + D T +L+D + + TY +KN
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEK 240
Query: 1913 FTSCAVSS--SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP--NGMALV 1968
+ A S G++I GS+DN V++W+L L GH + V S + P N +A
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 1969 TSSWDQFVKVWQ 1980
D+ +K+W+
Sbjct: 301 ALENDKTIKLWK 312
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 99/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 80
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ T P + ++ + G I S D +WD L +N V
Sbjct: 141 TGMCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 243
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 143/302 (47%), Gaps = 14/302 (4%)
Query: 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQ 1744
K +L GH V+SV +S + S S D + IW + G + I + VA++
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 71
Query: 1745 SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLL-TGSGDM 1803
N + D ++D++ + K ++ L G+ ++ C F + L+ +GS D
Sbjct: 72 DSNLLVSASDDKTLKIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 1804 KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF 1863
+ W+++TG+ + + AH V ++ + DG V+ S D C++WD +C++T
Sbjct: 126 SVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 184
Query: 1864 GHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS-- 1920
+ V+ V F P+G + D T +L+D + + TY +KN + A S
Sbjct: 185 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVT 243
Query: 1921 SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP--NGMALVTSSWDQFVKV 1978
G++I GS+DN V++W+L L GH + V S + P N +A D+ +K+
Sbjct: 244 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 303
Query: 1979 WQ 1980
W+
Sbjct: 304 WK 305
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 73
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ + T P + ++ + G I S D +WD L +N V
Sbjct: 134 TGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 191
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 192 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 236
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 144/312 (46%), Gaps = 16/312 (5%)
Query: 1675 PDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS 1734
P P LM +L GH V+SV +S + S S D + IW + G + I
Sbjct: 11 PVKPNYALM--FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 1735 AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT 1794
+ VA++ N + D ++D++ + K ++ L G+ ++ C F +
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVS------SGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 1795 TLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853
L+ +GS D + W+++TG + + AH V ++ + DG V+ S D C++WD
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 1854 REKKCVQTFFGHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912
+C++T + V+ V F P+G + D +L+D + + TY +KN
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY-TGHKNEK 240
Query: 1913 FTSCAVSS--SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP--NGMALV 1968
+ A S G++I GS+DN V++W+L L GH + V S + P N +A
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 1969 TSSWDQFVKVWQ 1980
D+ +K+W+
Sbjct: 301 ALENDKTIKLWK 312
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 99/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 80
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ T P + ++ + G I S D +WD L +N V
Sbjct: 141 TGMCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 199 SFVKFSPNGKYILAATLDNDLKLWDYSKG---KCLKTYTGHKNEKYCI 243
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 143/332 (43%), Gaps = 50/332 (15%)
Query: 1691 HINKVNSVHYSGDSRHCVSGS---------LDGKLI--IWDTWTGNK------TQVIPLR 1733
H + V V +S D + +G DG L+ + D NK T P
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 1734 SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCR-FID 1792
++ SV F+ G F+A G D + ++D+ NR K++ L G+E + S F
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR------KIVMILQGHEQDIYSLDYFPS 176
Query: 1793 DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLW 1851
L++GSGD + W+L TGQ + + V ++++SP DG+Y GS+D++ ++W
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTGQ--CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 234
Query: 1852 DFREKKCVQTF-------FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY 1904
D V+ GH+ V SV F G + +GS D++ +L++++ +
Sbjct: 235 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294
Query: 1905 LPPNKNS----------GFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR 1954
PN + S A + + YI GS D V WD +L GH N
Sbjct: 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 354
Query: 1955 VTSI------SLSPNGMALVTSSWDQFVKVWQ 1980
V S+ SL P T S D ++W+
Sbjct: 355 VISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 11/165 (6%)
Query: 1827 VVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE 1886
+ S+ SPDG++ TG+ D+ ++WD +K V GHE D+ S+ + PSG +GS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 1887 DKTARLFDIRADQQIATYLPPNKNSGFTSCAVS-SSGRYIFCGSDDNNVHVWD-----LL 1940
D+T R++D+R Q L + G T+ AVS G+YI GS D V VWD L+
Sbjct: 186 DRTVRIWDLRTGQ---CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 1941 K--TTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983
+ + N +GH++ V S+ + +G ++V+ S D+ VK+W N
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 20/214 (9%)
Query: 1786 SSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845
S C D L TG+ D I W++E ++I + Q H D+ S+ P G V+GS D
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 1846 KSCKLWDFREKKCVQTFFGHEADVNSVCFHPS-GLAFATGSEDKTARLFDIRADQQIATY 1904
++ ++WD R +C T E V +V P G A GS D+ R++D +
Sbjct: 187 RTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 1905 LPPNKNS-----GFTSCAVSSSGRYIFCGSDDNNVHVWDLL--------KTTHNGVLS-- 1949
N++ S + G+ + GS D +V +W+L KT ++G
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 305
Query: 1950 --GHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981
GH++ V S++ + N +++ S D+ V W +
Sbjct: 306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 105/266 (39%), Gaps = 37/266 (13%)
Query: 1655 CKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDG 1714
C K T ED + D K++ L+GH + S+ Y VSGS D
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIV--MILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 1715 KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD---------LNN 1765
+ IWD TG + + + G ++A G +D V+D L++
Sbjct: 188 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 1766 RDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHI 1824
+ +G G++ + S F D ++++GS D + WNL+ + +
Sbjct: 248 ENESGT--------GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299
Query: 1825 GD-----------VVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVC 1873
G V+S++ + + +Y ++GS D+ WD + + GH V SV
Sbjct: 300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359
Query: 1874 ------FHPSGLAFATGSEDKTARLF 1893
P FATGS D AR++
Sbjct: 360 VANGSSLGPEYNVFATGSGDCKARIW 385
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 21/174 (12%)
Query: 1702 GDSRHCVSGSLDGKLIIWDTWTG-------NKTQVIPLRSAWVMSVAFAQSGNFVACGGM 1754
GD ++ +GSLD + +WD+ TG ++ + V SV F + G V G +
Sbjct: 217 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276
Query: 1755 DNMCTVYDLNNRDSTGAAKVIRE------LLGYEGF-LSSCRFIDDTTLLTGSGDMKIVT 1807
D +++L N ++ +K +G++ F LS +D +L+GS D ++
Sbjct: 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 336
Query: 1808 WNLETGQRIHEVAQAHIGDVVSI------SLSPDGQYFVTGSVDKSCKLWDFRE 1855
W+ ++G + + Q H V+S+ SL P+ F TGS D ++W +++
Sbjct: 337 WDKKSGNPLL-MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 143/302 (47%), Gaps = 14/302 (4%)
Query: 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQ 1744
K +L GH V+SV +S + + S D + IW + G + I + VA++
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 1745 SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLL-TGSGDM 1803
N + D ++D++ + K ++ L G+ ++ C F + L+ +GS D
Sbjct: 79 DSNLLVSASDDKTLKIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 1804 KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF 1863
+ W+++TG+ + + AH V ++ + DG V+ S D C++WD +C++T
Sbjct: 133 SVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 1864 GHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS-- 1920
+ V+ V F P+G + D T +L+D + + TY +KN + A S
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVT 250
Query: 1921 SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP--NGMALVTSSWDQFVKV 1978
G++I GS+DN V++W+L L GH + V S + P N +A D+ +K+
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 310
Query: 1979 WQ 1980
W+
Sbjct: 311 WK 312
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 99/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLLTGS-GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L S D I W G + + H + ++ S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 80
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ + T P + ++ + G I S D +WD L +N V
Sbjct: 141 TGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 243
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 133/282 (47%), Gaps = 12/282 (4%)
Query: 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQ 1744
K +L GH V+SV +S + S S D + IW + G + I + VA++
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 1745 SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLL-TGSGDM 1803
N + D ++D++ + K ++ L G+ ++ C F + L+ +GS D
Sbjct: 79 DSNLLVSASDDKTLKIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 1804 KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF 1863
+ W+++TG+ + + AH V ++ + DG V+ S D C++WD +C++T
Sbjct: 133 SVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 1864 GHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS-- 1920
+ V+ V F P+G + D T +L+D + + TY +KN + A S
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVT 250
Query: 1921 SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP 1962
G++I GS+DN V++W+L L GH + V S + P
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 80
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ + T LP + + ++ + G I S D +WD L +N V
Sbjct: 141 TGKCLKT-LPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 243
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 105/237 (44%), Gaps = 52/237 (21%)
Query: 1668 EDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKT 1727
+D T + D K + K+LKGH N V +++ S VSGS D + IWD TG
Sbjct: 88 DDKTLKIWDVSSGKCL--KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 1728 QVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS 1787
+ +P S V +V F + G+ + D +C ++D T + + ++ L
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------TASGQCLKTL--------- 190
Query: 1788 CRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847
IDD D V++ + SP+G+Y + ++D +
Sbjct: 191 ---IDD--------DNPPVSF---------------------VKFSPNGKYILAATLDNT 218
Query: 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPS---GLAFATGSEDKTARLFDIRADQQI 1901
KLWD+ + KC++T+ GH+ + + + S G +GSED +++++ + +
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 100 bits (249), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 133/282 (47%), Gaps = 12/282 (4%)
Query: 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQ 1744
K +L GH V+SV +S + S S D + IW + G + I + VA++
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 1745 SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLL-TGSGDM 1803
N + D ++D++ + K ++ L G+ ++ C F + L+ +GS D
Sbjct: 79 DSNLLVSASDDKTLKIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 1804 KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF 1863
+ W+++TG+ + + AH V ++ + DG V+ S D C++WD +C++T
Sbjct: 133 SVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 1864 GHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS-- 1920
+ V+ V F P+G + D T +L+D + + TY +KN + A S
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVT 250
Query: 1921 SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP 1962
G++I GS+DN V++W+L L GH + V S + P
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 1778 LLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L G+ +SS +F + L + S D I W G + + H + ++ S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDS 80
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
V+ S DK+ K+WD KC++T GH V F+P +GS D++ R++D++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955
+ + T P + ++ + G I S D +WD L +N V
Sbjct: 141 TGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ + SPNG ++ ++ D +K+W S K LK Y K +C+
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCI 243
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 105/237 (44%), Gaps = 52/237 (21%)
Query: 1668 EDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKT 1727
+D T + D K + K+LKGH N V +++ S VSGS D + IWD TG
Sbjct: 88 DDKTLKIWDVSSGKCL--KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 1728 QVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS 1787
+ +P S V +V F + G+ + D +C ++D T + + ++ L
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------TASGQCLKTL--------- 190
Query: 1788 CRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847
IDD D V++ + SP+G+Y + ++D +
Sbjct: 191 ---IDD--------DNPPVSF---------------------VKFSPNGKYILAATLDNT 218
Query: 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPS---GLAFATGSEDKTARLFDIRADQQI 1901
KLWD+ + KC++T+ GH+ + + + S G +GSED +++++ + +
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s
Complex Obtained By Docking Homology Models Of The Rna
And Proteins Into An 8.7 A Cryo-Em Map
pdb|3J3A|GG Chain g, Structure Of The Human 40s Ribosomal Proteins
Length = 317
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 126/266 (47%), Gaps = 16/266 (6%)
Query: 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
+P+++L+GH + V+ V S D + +SGS DG L +WD TG T+ + V+SVAF
Sbjct: 54 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 113
Query: 1743 AQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT---LLTG 1799
+ + G D ++ ++ G K + + ++S RF +++ +++
Sbjct: 114 SSDNRQIVSGSRDKTIKLW-----NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 168
Query: 1800 SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCV 1859
D + WNL ++ H G + ++++SPDG +G D LWD E K +
Sbjct: 169 GWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227
Query: 1860 QTFFGHEADVNSVCFHPS--GLAFATGSE----DKTARLFDIRADQQIATYLPPNKNSGF 1913
T G + +N++CF P+ L ATG D ++ Q++ + +
Sbjct: 228 YTLDGGDI-INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC 286
Query: 1914 TSCAVSSSGRYIFCGSDDNNVHVWDL 1939
TS A S+ G+ +F G DN V VW +
Sbjct: 287 TSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 102/219 (46%), Gaps = 27/219 (12%)
Query: 1778 LLGYEGFLSSC----RFIDDTTLLTGSGDMKIVTWNL---ETGQRIHEVA-QAHIGDVVS 1829
L G+ G+++ +F D +L+ S D I+ W L ET I + A + H V
Sbjct: 11 LKGHNGWVTQIATTPQFPD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 1830 ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKT 1889
+ +S DGQ+ ++GS D + +LWD + F GH DV SV F +GS DKT
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
Query: 1890 ARLFDIRADQQIATY-LPPNKNSGFTSCAV----SSSGRYIFCGSDDNNVHVWDL----L 1940
+L++ + Y + +S + SC SS+ + CG D V VW+L L
Sbjct: 129 IKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW-DKLVKVWNLANCKL 184
Query: 1941 KTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
KT H GH + ++++SP+G + D +W
Sbjct: 185 KTNH----IGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 125/318 (39%), Gaps = 28/318 (8%)
Query: 1681 KLMPKKSLKGHINKVNSVHYSGDSRHCV-SGSLDGKLIIWDTWTGNKTQVIPLR-----S 1734
++ + +LKGH V + + + S S D +I+W IP R S
Sbjct: 4 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 63
Query: 1735 AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DD 1793
+V V + G F G D ++DL +T R +G+ + S F D+
Sbjct: 64 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT------RRFVGHTKDVLSVAFSSDN 117
Query: 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ--YFVTGSVDKSCKLW 1851
+++GS D I WN + ++H V + SP+ V+ DK K+W
Sbjct: 118 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 177
Query: 1852 DFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNS 1911
+ K GH +N+V P G A+G +D A L+D+ + + T
Sbjct: 178 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL----DGG 233
Query: 1912 GFTSCAVSSSGRYIFCGSDDNNVHVWDL-----LKTTHNGVLSGHEN----RVTSISLSP 1962
+ S RY C + ++ +WDL + V+S + TS++ S
Sbjct: 234 DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 293
Query: 1963 NGMALVTSSWDQFVKVWQ 1980
+G L D V+VWQ
Sbjct: 294 DGQTLFAGYTDNLVRVWQ 311
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 11/172 (6%)
Query: 1821 QAHIGDVVSISLSPD-GQYFVTGSVDKSCKLWDFREKKC-----VQTFFGHEADVNSVCF 1874
+ H G V I+ +P ++ S DK+ +W + + GH V+ V
Sbjct: 12 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI 71
Query: 1875 HPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNV 1934
G +GS D T RL+D+ ++ K+ S A SS R I GS D +
Sbjct: 72 SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD--VLSVAFSSDNRQIVSGSRDKTI 129
Query: 1935 HVWDLLKTTHNGVL-SGHENRVTSISLSPNGM--ALVTSSWDQFVKVWQESN 1983
+W+ L V H V+ + SPN +V+ WD+ VKVW +N
Sbjct: 130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
Length = 340
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 126/266 (47%), Gaps = 16/266 (6%)
Query: 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
+P+++L+GH + V+ V S D + +SGS DG L +WD TG T+ + V+SVAF
Sbjct: 77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 136
Query: 1743 AQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT---LLTG 1799
+ + G D ++ ++ G K + + ++S RF +++ +++
Sbjct: 137 SSDNRQIVSGSRDKTIKLW-----NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 191
Query: 1800 SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCV 1859
D + WNL ++ H G + ++++SPDG +G D LWD E K +
Sbjct: 192 GWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250
Query: 1860 QTFFGHEADVNSVCFHPS--GLAFATGSE----DKTARLFDIRADQQIATYLPPNKNSGF 1913
T G + +N++CF P+ L ATG D ++ Q++ + +
Sbjct: 251 YTLDGGDI-INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC 309
Query: 1914 TSCAVSSSGRYIFCGSDDNNVHVWDL 1939
TS A S+ G+ +F G DN V VW +
Sbjct: 310 TSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 102/219 (46%), Gaps = 27/219 (12%)
Query: 1778 LLGYEGFLSSC----RFIDDTTLLTGSGDMKIVTWNL---ETGQRIHEVA-QAHIGDVVS 1829
L G+ G+++ +F D +L+ S D I+ W L ET I + A + H V
Sbjct: 34 LKGHNGWVTQIATTPQFPD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 1830 ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKT 1889
+ +S DGQ+ ++GS D + +LWD + F GH DV SV F +GS DKT
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 151
Query: 1890 ARLFDIRADQQIATY-LPPNKNSGFTSCAV----SSSGRYIFCGSDDNNVHVWDL----L 1940
+L++ + Y + +S + SC SS+ + CG D V VW+L L
Sbjct: 152 IKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW-DKLVKVWNLANCKL 207
Query: 1941 KTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
KT H GH + ++++SP+G + D +W
Sbjct: 208 KTNH----IGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 125/318 (39%), Gaps = 28/318 (8%)
Query: 1681 KLMPKKSLKGHINKVNSVHYSGDSRHCV-SGSLDGKLIIWDTWTGNKTQVIPLR-----S 1734
++ + +LKGH V + + + S S D +I+W IP R S
Sbjct: 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 86
Query: 1735 AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DD 1793
+V V + G F G D ++DL +T R +G+ + S F D+
Sbjct: 87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT------RRFVGHTKDVLSVAFSSDN 140
Query: 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ--YFVTGSVDKSCKLW 1851
+++GS D I WN + ++H V + SP+ V+ DK K+W
Sbjct: 141 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200
Query: 1852 DFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNS 1911
+ K GH +N+V P G A+G +D A L+D+ + + T
Sbjct: 201 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL----DGG 256
Query: 1912 GFTSCAVSSSGRYIFCGSDDNNVHVWDL-----LKTTHNGVLSGHEN----RVTSISLSP 1962
+ S RY C + ++ +WDL + V+S + TS++ S
Sbjct: 257 DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 316
Query: 1963 NGMALVTSSWDQFVKVWQ 1980
+G L D V+VWQ
Sbjct: 317 DGQTLFAGYTDNLVRVWQ 334
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 11/172 (6%)
Query: 1821 QAHIGDVVSISLSPDG-QYFVTGSVDKSCKLWDFREKKC-----VQTFFGHEADVNSVCF 1874
+ H G V I+ +P ++ S DK+ +W + + GH V+ V
Sbjct: 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI 94
Query: 1875 HPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNV 1934
G +GS D T RL+D+ ++ K+ S A SS R I GS D +
Sbjct: 95 SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD--VLSVAFSSDNRQIVSGSRDKTI 152
Query: 1935 HVWDLLKTTHNGVL-SGHENRVTSISLSPNGM--ALVTSSWDQFVKVWQESN 1983
+W+ L V H V+ + SPN +V+ WD+ VKVW +N
Sbjct: 153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 158/368 (42%), Gaps = 41/368 (11%)
Query: 1644 LKKELTQLI---DKCKEEQAKQADTKLEDVTASMPDAPK---VKLMP----KKSLKGHIN 1693
L+K+ T +I K E ++K + K E+ T+ P K + +P K +L GH +
Sbjct: 51 LEKKWTSVIRLQKKVMELESKLNEAK-EEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRS 109
Query: 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG 1753
V V + VS S D + +WD TG+ + + + V ++F SG +A
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 1754 MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLET 1812
D ++D + IR + G++ +SS + + +++ S D I W ++T
Sbjct: 170 ADMTIKLWDFQ------GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 1813 GQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSV 1872
G + + H V + + DG + S D++ ++W K+C H V +
Sbjct: 224 GYCV-KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 282
Query: 1873 CFHP----SGLAFATGSE----------------DKTARLFDIRADQQIATYLPPNKNSG 1912
+ P S ++ ATGSE DKT +++D+ + T + ++
Sbjct: 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV--GHDNW 340
Query: 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972
S G++I +DD + VWD L+ HE+ VTS+ +VT S
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400
Query: 1973 DQFVKVWQ 1980
DQ VKVW+
Sbjct: 401 DQTVKVWE 408
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 16/226 (7%)
Query: 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQS 1745
+++ GH + V+SV + H VS S D + +W+ TG + WV V Q
Sbjct: 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 1746 GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL--SSCRFIDDTT-------- 1795
G +A D V+ + ++ + R ++ + SS I + T
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 1796 -----LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850
LL+GS D I W++ TG + + H V + G++ ++ + DK+ ++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 1851 WDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
WD++ K+C++T HE V S+ FH + TGS D+T ++++ R
Sbjct: 365 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 23/212 (10%)
Query: 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853
+ +++ S D I W+ ETG + H V IS G+ + S D + KLWDF
Sbjct: 121 SVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179
Query: 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGF 1913
+ +C++T GH+ +V+SV P+G + S DKT ++++++ + T+
Sbjct: 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWV 237
Query: 1914 TSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPN---------- 1963
+ G I S+D V VW + L H + V IS +P
Sbjct: 238 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 297
Query: 1964 ----------GMALVTSSWDQFVKVWQESNTI 1985
G L++ S D+ +K+W S +
Sbjct: 298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 117/265 (44%), Gaps = 16/265 (6%)
Query: 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
+P + L+GH V+ V S + VS S D L +W+ G + V+SVAF
Sbjct: 58 LPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAF 117
Query: 1743 AQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF---IDDTTLLTG 1799
+ + GG DN V+++ G + ++S RF +D +++G
Sbjct: 118 SPDNRQIVSGGRDNALRVWNVK-----GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 1800 SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCV 1859
D + W+L TG+ + ++ + H V S+++SPDG + D +LWD + + +
Sbjct: 173 GWDNLVKVWDLATGRLVTDL-KGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEAL 231
Query: 1860 QTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG-----FT 1914
A +N +CF P+ +E K R+FD+ I P ++ S
Sbjct: 232 SE-MAAGAPINQICFSPNRYWMCAATE-KGIRIFDLENKDIIVELAPEHQGSKKIVPECV 289
Query: 1915 SCAVSSSGRYIFCGSDDNNVHVWDL 1939
S A S+ G ++ G DN + VW +
Sbjct: 290 SIAWSADGSTLYSGYTDNVIRVWGV 314
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 17/218 (7%)
Query: 1777 ELLGYEGFLSS--CRFIDDTT--LLTGSGDMKIVTWNLETGQRIHEVA--------QAHI 1824
+L G+ G+++S C +T +++ S D +++W + E + + H
Sbjct: 8 QLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 1825 GDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATG 1884
V ++LS +G + V+ S D S +LW+ + +C F GH DV SV F P +G
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSG 127
Query: 1885 SEDKTARLFDIRADQQIATYLPPNKNSGFTSC---AVSSSGRYIFCGSDDNNVHVWDLLK 1941
D R+++++ + L ++ + SC + S I G DN V VWDL
Sbjct: 128 GRDNALRVWNVKG--ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLAT 185
Query: 1942 TTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
L GH N VTS+++SP+G +S D ++W
Sbjct: 186 GRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 115/264 (43%), Gaps = 30/264 (11%)
Query: 1734 SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-D 1792
SA+V VA + +GNF D+ +++L N + + LG+ + S F D
Sbjct: 67 SAFVSDVALSNNGNFAVSASWDHSLRLWNLQN------GQCQYKFLGHTKDVLSVAFSPD 120
Query: 1793 DTTLLTGSGDMKIVTWNLETGQRIHEVAQ-AHIGDVVSISLSP--DGQYFVTGSVDKSCK 1849
+ +++G D + WN++ G+ +H +++ AH V + SP D V+G D K
Sbjct: 121 NRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 1850 LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDI---RADQQIATYLP 1906
+WD + V GH V SV P G A+ +D ARL+D+ A ++A P
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAP 239
Query: 1907 PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL--------LKTTHNGVLSGHENRVTSI 1958
N+ S RY C + + + ++DL L H G V SI
Sbjct: 240 INQ-------ICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECV-SI 291
Query: 1959 SLSPNGMALVTSSWDQFVKVWQES 1982
+ S +G L + D ++VW S
Sbjct: 292 AWSADGSTLYSGYTDNVIRVWGVS 315
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 15/185 (8%)
Query: 1679 KVKLMPKKSLKGHINKVNSVHYSG--DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAW 1736
K + M S H + V+ V +S D+ VSG D + +WD TG + + +
Sbjct: 139 KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNY 198
Query: 1737 VMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTL 1796
V SV + G+ A D + ++DL + + E+ C F +
Sbjct: 199 VTSVTVSPDGSLCASSDKDGVARLWDLTK------GEALSEMAAGAPINQIC-FSPNRYW 251
Query: 1797 LTGSGDMKIVTWNLETGQRIHEVAQAHIG------DVVSISLSPDGQYFVTGSVDKSCKL 1850
+ + + I ++LE I E+A H G + VSI+ S DG +G D ++
Sbjct: 252 MCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRV 311
Query: 1851 WDFRE 1855
W E
Sbjct: 312 WGVSE 316
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 1948 LSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983
L GH V+ ++LS NG V++SWD +++W N
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQN 98
>pdb|3J38|GG Chain g, Structure Of The D. Melanogaster 40s Ribosomal Proteins
Length = 318
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 22/273 (8%)
Query: 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFA 1743
P+K L GH + ++ V S D + +SGS D L +WD G T+ + V+SVAF+
Sbjct: 56 PQKRLYGHSHFISDVVLSSDGNYALSGSWDQTLRLWDLAAGKTTRRFEGHTKDVLSVAFS 115
Query: 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT---LLTGS 1800
+ G D ++ ++ K + G+ ++S RF + + +++
Sbjct: 116 ADNRQIVSGSRDKTIKLW-----NTLAECKFTIQEDGHTDWVSCVRFSPNHSNPIIVSCG 170
Query: 1801 GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQ 1860
D + WNL ++ H G + ++++SPDG +G D LWD + K +
Sbjct: 171 WDRTVKVWNLANC-KLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLY 229
Query: 1861 TFFGHEADVNSVCFHPS--GLAFATGSEDKTARLFDIRADQQIATYLP----PNKNSGFT 1914
T H +N++CF P+ L A G + +++D+ + + P P +
Sbjct: 230 T-LEHNDIINALCFSPNRYWLCVAYG---PSIKIWDLACKKTVEELRPEVVSPTSKADQP 285
Query: 1915 SC---AVSSSGRYIFCGSDDNNVHVWDLLKTTH 1944
C A S+ G+ +F G DN + VW + + H
Sbjct: 286 QCLSLAWSTDGQTLFAGYSDNTIRVWQVSVSAH 318
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 28/220 (12%)
Query: 1778 LLGYEGFLS--SCRFIDDTTLLTGSGDMKIVTWNLETGQRIHE-------VAQAH-IGDV 1827
L+G+ G+++ + D T+++ S D ++ W L + + +H I DV
Sbjct: 11 LIGHNGWVTQIATNPKDPDTIISASRDKTLIVWKLTRDEDTNYGYPQKRLYGHSHFISDV 70
Query: 1828 VSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED 1887
V LS DG Y ++GS D++ +LWD K + F GH DV SV F +GS D
Sbjct: 71 V---LSSDGNYALSGSWDQTLRLWDLAAGKTTRRFEGHTKDVLSVAFSADNRQIVSGSRD 127
Query: 1888 KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR----YIFCGSDDNNVHVWDL---- 1939
KT +L++ A+ + + + ++ + SC S + CG D V VW+L
Sbjct: 128 KTIKLWNTLAECKFT--IQEDGHTDWVSCVRFSPNHSNPIIVSCGW-DRTVKVWNLANCK 184
Query: 1940 LKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
LK H+ GH + ++++SP+G + D +W
Sbjct: 185 LKNNHH----GHNGYLNTVTVSPDGSLCTSGGKDSKALLW 220
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 12/172 (6%)
Query: 1822 AHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKCV------QTFFGHEADVNSVCF 1874
H G V I+ +P D ++ S DK+ +W + + +GH ++ V
Sbjct: 13 GHNGWVTQIATNPKDPDTIISASRDKTLIVWKLTRDEDTNYGYPQKRLYGHSHFISDVVL 72
Query: 1875 HPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNV 1934
G +GS D+T RL+D+ A + + K+ S A S+ R I GS D +
Sbjct: 73 SSDGNYALSGSWDQTLRLWDLAAGKTTRRFEGHTKD--VLSVAFSADNRQIVSGSRDKTI 130
Query: 1935 HVWDLLKTTHNGVLS-GHENRVTSISLSPN--GMALVTSSWDQFVKVWQESN 1983
+W+ L + GH + V+ + SPN +V+ WD+ VKVW +N
Sbjct: 131 KLWNTLAECKFTIQEDGHTDWVSCVRFSPNHSNPIIVSCGWDRTVKVWNLAN 182
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 135/303 (44%), Gaps = 26/303 (8%)
Query: 1681 KLMPKKSLKGHINKV-NSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMS 1739
+L K LKGH + V + + G+ VSGS D L +W TG + + + V S
Sbjct: 107 ELKSPKVLKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 164
Query: 1740 VAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTG 1799
N + G D V++ + I L G+ + C + + +++G
Sbjct: 165 SQMRD--NIIISGSTDRTLKVWNAE------TGECIHTLYGHTSTV-RCMHLHEKRVVSG 215
Query: 1800 SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCV 1859
S D + W++ETGQ +H V H+ V + DG+ V+G+ D K+WD + C+
Sbjct: 216 SRDATLRVWDIETGQCLH-VLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL 272
Query: 1860 QTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVS 1919
T GH V S+ F G+ +GS D + R++D+ I T + TS +
Sbjct: 273 HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL---TGHQSLTS-GME 326
Query: 1920 SSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG---HENRVTSISLSPNGMALVTSSWDQFV 1976
+ G+ D+ V +WD+ L G H++ VT + + N ++TSS D V
Sbjct: 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTV 384
Query: 1977 KVW 1979
K+W
Sbjct: 385 KLW 387
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 118/258 (45%), Gaps = 18/258 (6%)
Query: 1746 GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKI 1805
GN + G DN V+ S K +R L+G+ G + S + + D +++GS D +
Sbjct: 129 GNRIVSGSDDNTLKVW------SAVTGKCLRTLVGHTGGVWSSQ-MRDNIIISGSTDRTL 181
Query: 1806 VTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH 1865
WN ETG+ IH + H V + L + V+GS D + ++WD +C+ GH
Sbjct: 182 KVWNAETGECIHTLY-GHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGH 238
Query: 1866 EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYI 1925
A V C G +G+ D +++D + + T L + N + ++ G ++
Sbjct: 239 VAAVR--CVQYDGRRVVSGAYDFMVKVWDPETETCLHT-LQGHTNRVY---SLQFDGIHV 292
Query: 1926 FCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTI 1985
GS D ++ VWD+ L+GH++ + + L N LV+ + D VK+W
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQ 350
Query: 1986 VWKVLKVYNLEKKTIFCV 2003
+ L+ N + + C+
Sbjct: 351 CLQTLQGPNKHQSAVTCL 368
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 11/210 (5%)
Query: 1770 GAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVS 1829
G K + L G++ + +C +++GS D + W+ TG+ + + H G V S
Sbjct: 106 GELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWS 164
Query: 1830 ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKT 1889
+ + ++GS D++ K+W+ +C+ T +GH + V C H +GS D T
Sbjct: 165 SQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHEKRVVSGSRDAT 220
Query: 1890 ARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS 1949
R++DI Q + + + C V GR + G+ D V VWD T L
Sbjct: 221 LRVWDIETGQCLHVLMG---HVAAVRC-VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 276
Query: 1950 GHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
GH NRV S+ +G+ +V+ S D ++VW
Sbjct: 277 GHTNRVYSLQF--DGIHVVSGSLDTSIRVW 304
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 20/251 (7%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSG 1746
+L GH + V +H + VSGS D L +WD TG V+ A V V + G
Sbjct: 194 TLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249
Query: 1747 NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIV 1806
V G D M V+D + L G+ + S +F D +++GS D I
Sbjct: 250 RRVVSGAYDFMVKVWDPETE------TCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIR 302
Query: 1807 TWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG-- 1864
W++ETG IH + H + L + V+G+ D + K+WD + +C+QT G
Sbjct: 303 VWDVETGNCIHTLT-GHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPN 359
Query: 1865 -HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP-PNKNSGFTSCAVSSSG 1922
H++ V + F+ + T S+D T +L+D++ + I + + SG + +S
Sbjct: 360 KHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 417
Query: 1923 RYIFCGSDDNN 1933
+ C N
Sbjct: 418 TKLVCAVGSRN 428
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating
80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 116/273 (42%), Gaps = 27/273 (9%)
Query: 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
+P +S KGH + V + D + +S S D L +WD TG Q + VMSV
Sbjct: 56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI 115
Query: 1743 AQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-------DDTT 1795
+ + + G D V+ + + + LLG+ ++S R + D T
Sbjct: 116 DKKASMIISGSRDKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
+++ D + WNL Q I H ++ +++ SPDG + D LW+
Sbjct: 169 IISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 1856 KKCVQTFFGHEADVNSVCFHPS----GLAFATG----SEDKTARLFDIRADQQIATYLPP 1907
KK + T + +V S+ F P+ A ATG S D + D+R + A Y
Sbjct: 228 KKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSKA 284
Query: 1908 NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940
+ S A S+ G+ +F G DN + VW ++
Sbjct: 285 AEPHA-VSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 27/201 (13%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEV------AQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849
LL+ S D +++W L + V +HI V +L+ DG Y ++ S DK+ +
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI--VQDCTLTADGAYALSASWDKTLR 90
Query: 1850 LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP--- 1906
LWD + Q F GH++DV SV +GS DKT +++ I+ Q +AT L
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND 149
Query: 1907 --------PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSI 1958
PN+ + S + S+G +D V W+L + GH + + ++
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAG-------NDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 1959 SLSPNGMALVTSSWDQFVKVW 1979
+ SP+G + ++ D + +W
Sbjct: 203 TASPDGTLIASAGKDGEIMLW 223
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 93/213 (43%), Gaps = 12/213 (5%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQ----AHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851
+++ S D I+ W L + + VAQ H V + LS DGQ+ ++GS D +LW
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 1852 DFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNS 1911
D + F GH DV SV F + S D+T +L++ + + +
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517
Query: 1912 GFTSCAVSSSGRY---IFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALV 1968
+ SC S I S D V VW+L L+GH V+++++SP+G
Sbjct: 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA 577
Query: 1969 TSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIF 2001
+ D V +W + K+Y+LE ++
Sbjct: 578 SGGKDGVVLLWDLAEG-----KKLYSLEANSVI 605
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 137/328 (41%), Gaps = 40/328 (12%)
Query: 1682 LMPKKSLKGHINKVNSVHYSGDSRHC-VSGSLDGKLIIWDTWTGNKTQVIPLR-----SA 1735
L+ K +++ H + V ++ D+ VS S D +I+W +K + R S
Sbjct: 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH 431
Query: 1736 WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF-IDDT 1794
+V V + G F G D ++DL ST R +G+ + S F +D+
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST------RRFVGHTKDVLSVAFSLDNR 485
Query: 1795 TLLTGSGDMKIVTWNL--ETGQRIHEVAQAHIGDVVSISLSPDG--QYFVTGSVDKSCKL 1850
+++ S D I WN E I E + H V + SP+ V+ S DK+ K+
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 1851 WDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN 1910
W+ K T GH V++V P G A+G +D L+D+ +++ + N
Sbjct: 546 WNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---EAN 602
Query: 1911 SGFTSCAVSSSGRYIFCGSDDNNVHVWDL----------------LKTTHNGVLSGHENR 1954
S + S + RY C + ++ + +WDL + N + + +
Sbjct: 603 SVIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK 661
Query: 1955 V---TSISLSPNGMALVTSSWDQFVKVW 1979
V TS++ S +G L + D ++VW
Sbjct: 662 VIYCTSLNWSADGSTLFSGYTDGVIRVW 689
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 123/279 (44%), Gaps = 30/279 (10%)
Query: 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
+ ++ L GH + V V S D + +SGS DG+L +WD G T+ + V+SVAF
Sbjct: 421 VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480
Query: 1743 AQSGNFVACGGMDNMCTVYDLNNRDSTGAAK--VIRELLGYEGFLSSCRFIDDT---TLL 1797
+ + D ++ ++ G K + G+ ++S RF +T T++
Sbjct: 481 SLDNRQIVSASRDRTIKLW-----NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535
Query: 1798 TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKK 1857
+ S D + WNL + ++ H G V ++++SPDG +G D LWD E K
Sbjct: 536 SASWDKTVKVWNL-SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594
Query: 1858 CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA-----DQQIATYLPPNK--N 1910
+ + + ++++CF P+ +E +++D+ + D ++ K N
Sbjct: 595 KLYSLEANSV-IHALCFSPNRYWLCAATEHGI-KIWDLESKSIVEDLKVDLKAEAEKADN 652
Query: 1911 SG----------FTSCAVSSSGRYIFCGSDDNNVHVWDL 1939
SG TS S+ G +F G D + VW +
Sbjct: 653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 116/273 (42%), Gaps = 27/273 (9%)
Query: 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
+P +S KGH + V + D + +S S D L +WD TG Q + VMSV
Sbjct: 50 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI 109
Query: 1743 AQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-------DDTT 1795
+ + + G D V+ + + + LLG+ ++S R + D T
Sbjct: 110 DKKASMIISGSRDKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVT 162
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
+++ D + WNL Q I H ++ +++ SPDG + D LW+
Sbjct: 163 IISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 221
Query: 1856 KKCVQTFFGHEADVNSVCFHPS----GLAFATG----SEDKTARLFDIRADQQIATYLPP 1907
KK + T + +V S+ F P+ A ATG S D + D+R + A Y
Sbjct: 222 KKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSKA 278
Query: 1908 NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940
+ S A S+ G+ +F G DN + VW ++
Sbjct: 279 AEPHA-VSLAWSADGQTLFAGYTDNVIRVWQVM 310
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 27/201 (13%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEV------AQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849
LL+ S D +++W L + V +HI V +L+ DG Y ++ S DK+ +
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI--VQDCTLTADGAYALSASWDKTLR 84
Query: 1850 LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP--- 1906
LWD + Q F GH++DV SV +GS DKT +++ I+ Q +AT L
Sbjct: 85 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND 143
Query: 1907 --------PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSI 1958
PN+ + S + S+G +D V W+L + GH + + ++
Sbjct: 144 WVSQVRVVPNEKADDDSVTIISAG-------NDKMVKAWNLNQFQIEADFIGHNSNINTL 196
Query: 1959 SLSPNGMALVTSSWDQFVKVW 1979
+ SP+G + ++ D + +W
Sbjct: 197 TASPDGTLIASAGKDGEIMLW 217
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 116/273 (42%), Gaps = 27/273 (9%)
Query: 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
+P +S KGH + V + D + +S S D L +WD TG Q + VMSV
Sbjct: 56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI 115
Query: 1743 AQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-------DDTT 1795
+ + + G D V+ + + + LLG+ ++S R + D T
Sbjct: 116 DKKASMIISGSRDKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
+++ D + WNL Q I H ++ +++ SPDG + D LW+
Sbjct: 169 IISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 1856 KKCVQTFFGHEADVNSVCFHPS----GLAFATG----SEDKTARLFDIRADQQIATYLPP 1907
KK + T + +V S+ F P+ A ATG S D + D+R + A Y
Sbjct: 228 KKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLR--PEFAGYSAA 284
Query: 1908 NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940
+ S A S+ G+ +F G DN + VW ++
Sbjct: 285 AEPHA-VSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 27/201 (13%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEV------AQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849
LL+ S D +++W L + V +HI V +L+ DG Y ++ S DK+ +
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI--VQDCTLTADGAYALSASWDKTLR 90
Query: 1850 LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP--- 1906
LWD + Q F GH++DV SV +GS DKT +++ I+ Q +AT L
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND 149
Query: 1907 --------PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSI 1958
PN+ + S + S+G +D V W+L + GH + + ++
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAG-------NDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 1959 SLSPNGMALVTSSWDQFVKVW 1979
+ SP+G + ++ D + +W
Sbjct: 203 TASPDGTLIASAGKDGEIMLW 223
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 116/273 (42%), Gaps = 27/273 (9%)
Query: 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
+P +S KGH + V + D + +S S D L +WD TG Q + VMSV
Sbjct: 56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI 115
Query: 1743 AQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-------DDTT 1795
+ + + G D V+ + + + LLG+ ++S R + D T
Sbjct: 116 DKKASMIISGSRDKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
+++ D + WNL Q I H ++ +++ SPDG + D LW+
Sbjct: 169 IISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 1856 KKCVQTFFGHEADVNSVCFHPS----GLAFATG----SEDKTARLFDIRADQQIATYLPP 1907
KK + T + +V S+ F P+ A ATG S D + D+R + A Y
Sbjct: 228 KKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSKA 284
Query: 1908 NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940
+ S A S+ G+ +F G DN + VW ++
Sbjct: 285 AEPHA-VSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 27/201 (13%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEV------AQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849
LL+ S D +++W L + V +HI V +L+ DG Y ++ S DK+ +
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI--VQDCTLTADGAYALSASWDKTLR 90
Query: 1850 LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP--- 1906
LWD + Q F GH++DV SV +GS DKT +++ I+ Q +AT L
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND 149
Query: 1907 --------PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSI 1958
PN+ + S + S+G +D V W+L + GH + + ++
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAG-------NDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 1959 SLSPNGMALVTSSWDQFVKVW 1979
+ SP+G + ++ D + +W
Sbjct: 203 TASPDGTLIASAGKDGEIMLW 223
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 114/270 (42%), Gaps = 27/270 (10%)
Query: 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
+P +S KGH + V + D + +S S D L +WD TG Q + VMSV
Sbjct: 56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI 115
Query: 1743 AQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-------DDTT 1795
+ + + G D V+ + + + LLG+ ++S R + D T
Sbjct: 116 DKKASMIISGSRDKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
+++ D + WNL Q I H ++ +++ SPDG + D LW+
Sbjct: 169 IISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 1856 KKCVQTFFGHEADVNSVCFHPS----GLAFATG----SEDKTARLFDIRADQQIATYLPP 1907
KK + T + +V S+ F P+ A ATG S D + D+R + A Y
Sbjct: 228 KKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSKA 284
Query: 1908 NKNSGFTSCAVSSSGRYIFCGSDDNNVHVW 1937
+ S A S+ G+ +F G DN + VW
Sbjct: 285 AEPHA-VSLAWSADGQTLFAGYTDNVIRVW 313
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 27/201 (13%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEV------AQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849
LL+ S D +++W L + V +HI V +L+ DG Y ++ S DK+ +
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI--VQDCTLTADGAYALSASWDKTLR 90
Query: 1850 LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP--- 1906
LWD + Q F GH++DV SV +GS DKT +++ I+ Q +AT L
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND 149
Query: 1907 --------PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSI 1958
PN+ + S + S+G +D V W+L + GH + + ++
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAG-------NDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 1959 SLSPNGMALVTSSWDQFVKVW 1979
+ SP+G + ++ D + +W
Sbjct: 203 TASPDGTLIASAGKDGEIMLW 223
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 119/300 (39%), Gaps = 63/300 (21%)
Query: 1737 VMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTT 1795
V F+Q G +A G D V+ + TG + ++ +E + C F DD+
Sbjct: 618 VYHACFSQDGQRIASCGADKTLQVF----KAETGEK--LLDIKAHEDEVLCCAFSSDDSY 671
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV--TGSVDKSCKLWDF 1853
+ T S D K+ W+ TG+ +H + H V + + + TGS D KLWD
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Query: 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ----------IAT 1903
+K+C T FGH VN F P A+ S D T RL+D+R+ + +++
Sbjct: 731 NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 790
Query: 1904 YLPPNKNSGFTS-CAVSSSGRYIFCGSDDN----NVHVWDLLKTTHNGVLS--------- 1949
PP C+ S+ G I + + ++H LL H G S
Sbjct: 791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 850
Query: 1950 -----------------------------GHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980
GH + V + SP+G + +T+S DQ ++VW+
Sbjct: 851 YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 137/318 (43%), Gaps = 46/318 (14%)
Query: 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMS----- 1739
+ ++ GH N VN +S D S S DG L +WD + N+ + I ++ ++ S
Sbjct: 736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPE 795
Query: 1740 --------VAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791
+++ G+ + N ++D++ ++G I G+ + C F
Sbjct: 796 DVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIH---TSGLLAEIHT--GHHSTIQYCDFS 849
Query: 1792 D-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850
D + + WN+++ ++ + + H+ V + SPDG F+T S D++ ++
Sbjct: 850 PYDHLAVIALSQYCVELWNIDSRLKVAD-CRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908
Query: 1851 WDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIAT------Y 1904
W+ + K C + + +++ V + A +IR Q IA Y
Sbjct: 909 WETK-KVCKNSAIVLKQEIDVVFQENETMVLAVD---------NIRGLQLIAGKTGQIDY 958
Query: 1905 LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS---GHENRVTSISLS 1961
LP + S C +S Y+ G +D + + +L +N V S GH+ V I +
Sbjct: 959 LPEAQVS---CCCLSPHLEYVAFGDEDGAIKIIEL---PNNRVFSSGVGHKKAVRHIQFT 1012
Query: 1962 PNGMALVTSSWDQFVKVW 1979
+G L++SS D ++VW
Sbjct: 1013 ADGKTLISSSEDSVIQVW 1030
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 8/176 (4%)
Query: 1737 VMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTL 1796
V + F G + D++ V++ D L ++ + R + D+ L
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-------LQAHQETVKDFRLLQDSRL 1058
Query: 1797 LTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK 1856
L+ S D + WN+ TG RI H G V+S ++S D F + S DK+ K+W F
Sbjct: 1059 LSWSFDGTVKVWNVITG-RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 1857 KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912
+ GH V F G+ ATG ++ R++++ Q + + P + G
Sbjct: 1118 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG 1173
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 66/161 (40%)
Query: 1819 VAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG 1878
V + H V S DGQ + DK+ +++ + + HE +V F
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 1879 LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938
AT S DK +++D + + TY ++ S+ + GS+D + +WD
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 1939 LLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
L + + GH N V SP+ L + S D +++W
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/335 (20%), Positives = 119/335 (35%), Gaps = 95/335 (28%)
Query: 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDT------------------WTGNKTQVI 1730
+GH++ V+ V +S D ++ S D + +W+T + N+T V+
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938
Query: 1731 PLRSAWVMSVAFAQSGN-------------------FVACGGMDNMCTVYDLNNRDSTGA 1771
+ + + + ++G +VA G D + +L N
Sbjct: 939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN----- 993
Query: 1772 AKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSI 1830
+V +G++ + +F D TL++ S D I WN +TG + QAH V
Sbjct: 994 -RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAHQETVKDF 1050
Query: 1831 SLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTA 1890
L D + ++ S D + K+W+ + + F H+ V
Sbjct: 1051 RLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTV--------------------- 1088
Query: 1891 RLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVW--DLLKTTHNGVL 1948
SCA+SS S D +W DLL H L
Sbjct: 1089 -----------------------LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE--L 1123
Query: 1949 SGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983
GH V + S +G+ L T + +++W S+
Sbjct: 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 119/300 (39%), Gaps = 63/300 (21%)
Query: 1737 VMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTT 1795
V F+Q G +A G D V+ + TG + ++ +E + C F DD+
Sbjct: 625 VYHACFSQDGQRIASCGADKTLQVF----KAETGEK--LLDIKAHEDEVLCCAFSSDDSY 678
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV--TGSVDKSCKLWDF 1853
+ T S D K+ W+ TG+ +H + H V + + + TGS D KLWD
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 737
Query: 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ----------IAT 1903
+K+C T FGH VN F P A+ S D T RL+D+R+ + +++
Sbjct: 738 NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 797
Query: 1904 YLPPNKNSGFTS-CAVSSSGRYIFCGSDDN----NVHVWDLLKTTHNGVLS--------- 1949
PP C+ S+ G I + + ++H LL H G S
Sbjct: 798 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 857
Query: 1950 -----------------------------GHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980
GH + V + SP+G + +T+S DQ ++VW+
Sbjct: 858 YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 137/318 (43%), Gaps = 46/318 (14%)
Query: 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMS----- 1739
+ ++ GH N VN +S D S S DG L +WD + N+ + I ++ ++ S
Sbjct: 743 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPE 802
Query: 1740 --------VAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791
+++ G+ + N ++D++ ++G I G+ + C F
Sbjct: 803 DVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIH---TSGLLAEIHT--GHHSTIQYCDFS 856
Query: 1792 D-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850
D + + WN+++ ++ + + H+ V + SPDG F+T S D++ ++
Sbjct: 857 PYDHLAVIALSQYCVELWNIDSRLKVAD-CRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 915
Query: 1851 WDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIAT------Y 1904
W+ + K C + + +++ V + A +IR Q IA Y
Sbjct: 916 WETK-KVCKNSAIVLKQEIDVVFQENETMVLAVD---------NIRGLQLIAGKTGQIDY 965
Query: 1905 LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS---GHENRVTSISLS 1961
LP + S C +S Y+ G +D + + +L +N V S GH+ V I +
Sbjct: 966 LPEAQVS---CCCLSPHLEYVAFGDEDGAIKIIEL---PNNRVFSSGVGHKKAVRHIQFT 1019
Query: 1962 PNGMALVTSSWDQFVKVW 1979
+G L++SS D ++VW
Sbjct: 1020 ADGKTLISSSEDSVIQVW 1037
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 8/176 (4%)
Query: 1737 VMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTL 1796
V + F G + D++ V++ D L ++ + R + D+ L
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-------LQAHQETVKDFRLLQDSRL 1065
Query: 1797 LTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK 1856
L+ S D + WN+ TG RI H G V+S ++S D F + S DK+ K+W F
Sbjct: 1066 LSWSFDGTVKVWNVITG-RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 1857 KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912
+ GH V F G+ ATG ++ R++++ Q + + P + G
Sbjct: 1125 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG 1180
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 66/161 (40%)
Query: 1819 VAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG 1878
V + H V S DGQ + DK+ +++ + + HE +V F
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 1879 LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938
AT S DK +++D + + TY ++ S+ + GS+D + +WD
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 1939 LLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
L + + GH N V SP+ L + S D +++W
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/335 (20%), Positives = 119/335 (35%), Gaps = 95/335 (28%)
Query: 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDT------------------WTGNKTQVI 1730
+GH++ V+ V +S D ++ S D + +W+T + N+T V+
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 945
Query: 1731 PLRSAWVMSVAFAQSGN-------------------FVACGGMDNMCTVYDLNNRDSTGA 1771
+ + + + ++G +VA G D + +L N
Sbjct: 946 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN----- 1000
Query: 1772 AKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSI 1830
+V +G++ + +F D TL++ S D I WN +TG + QAH V
Sbjct: 1001 -RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAHQETVKDF 1057
Query: 1831 SLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTA 1890
L D + ++ S D + K+W+ + + F H+ V
Sbjct: 1058 RLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTV--------------------- 1095
Query: 1891 RLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVW--DLLKTTHNGVL 1948
SCA+SS S D +W DLL H L
Sbjct: 1096 -----------------------LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE--L 1130
Query: 1949 SGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983
GH V + S +G+ L T + +++W S+
Sbjct: 1131 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1165
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 7/211 (3%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
++ GS D +I +N TG+++ + +AH + SI++ P Y ++GS D + KLW++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 1856 KKCV-QTFFGHEADVNSVCFHPSGLA-FATGSEDKTARLFDI-RADQQIATYLPPNKNSG 1912
+ QTF GHE V V F+P + FA+G D+T +++ + ++ +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972
+ Y+ SDD + +WD + L GH + V+ P +++ S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 1973 DQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
D +K+W N+ +KV K N+ + +C+
Sbjct: 249 DGTLKIW---NSSTYKVEKTLNVGLERSWCI 276
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 9/191 (4%)
Query: 1708 VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767
+ GS D ++ +++ TG K ++ S+A + +V G D +++ N
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN- 129
Query: 1768 STGAAKVIRELLGYEGFLSSCRF--IDDTTLLTGSGDMKIVTWNL--ETGQRIHEVAQAH 1823
+ + G+E F+ F D +T +G D + W+L T Q
Sbjct: 130 ----WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 1824 IGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFAT 1883
+ V PD Y +T S D + K+WD++ K CV T GH ++V+ FHP+ +
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 1884 GSEDKTARLFD 1894
GSED T ++++
Sbjct: 246 GSEDGTLKIWN 256
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 12/191 (6%)
Query: 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853
TTL +G ++ WN ET + + Q V + + + GS D +++++
Sbjct: 30 TTLYSG----RVELWNYETQVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84
Query: 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGF 1913
+ V F H + S+ HP+ +GS+D T +L++ + + +++ F
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH--F 142
Query: 1914 TSC-AVSSSGRYIFC-GSDDNNVHVWDLLKTTHNGVL-SGHENRVTSISLS--PNGMALV 1968
C A + F G D V VW L ++T N L +G E V + P+ ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 1969 TSSWDQFVKVW 1979
T+S D +K+W
Sbjct: 203 TASDDLTIKIW 213
Score = 38.1 bits (87), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD--TWTGNKTQVIPLRSAWVMSVAFAQ 1744
+L+GH++ V+ + +SGS DG L IW+ T+ KT + L +W ++
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 1745 SGNFVACGGMDNMCTVYDLNN 1765
N++A G DN TV L N
Sbjct: 283 RKNYIAS-GFDNGFTVLSLGN 302
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 7/211 (3%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
++ GS D +I +N TG+++ + +AH + SI++ P Y ++GS D + KLW++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 1856 KKCV-QTFFGHEADVNSVCFHPSGLA-FATGSEDKTARLFDI-RADQQIATYLPPNKNSG 1912
+ QTF GHE V V F+P + FA+G D+T +++ + ++ +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972
+ Y+ SDD + +WD + L GH + V+ P +++ S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 1973 DQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
D +K+W N+ +KV K N+ + +C+
Sbjct: 249 DGTLKIW---NSSTYKVEKTLNVGLERSWCI 276
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 9/191 (4%)
Query: 1708 VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767
+ GS D ++ +++ TG K ++ S+A + +V G D +++ N
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN- 129
Query: 1768 STGAAKVIRELLGYEGFLSSCRF--IDDTTLLTGSGDMKIVTWNL--ETGQRIHEVAQAH 1823
+ + G+E F+ F D +T +G D + W+L T Q
Sbjct: 130 ----WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 1824 IGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFAT 1883
+ V PD Y +T S D + K+WD++ K CV T GH ++V+ FHP+ +
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 1884 GSEDKTARLFD 1894
GSED T ++++
Sbjct: 246 GSEDGTLKIWN 256
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 12/191 (6%)
Query: 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853
TTL +G ++ WN ET + + Q V + + + GS D +++++
Sbjct: 30 TTLYSG----RVELWNYETQVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84
Query: 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGF 1913
+ V F H + S+ HP+ +GS+D T +L++ + + +++ F
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH--F 142
Query: 1914 TSC-AVSSSGRYIFC-GSDDNNVHVWDLLKTTHNGVL-SGHENRVTSISLS--PNGMALV 1968
C A + F G D V VW L ++T N L +G E V + P+ ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 1969 TSSWDQFVKVW 1979
T+S D +K+W
Sbjct: 203 TASDDLTIKIW 213
Score = 38.1 bits (87), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD--TWTGNKTQVIPLRSAWVMSVAFAQ 1744
+L+GH++ V+ + +SGS DG L IW+ T+ KT + L +W ++
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 1745 SGNFVACGGMDNMCTVYDLNN 1765
N++A G DN TV L N
Sbjct: 283 RKNYIAS-GFDNGFTVLSLGN 302
>pdb|4J79|A Chain A, Crystal Structure Of Beta'-cop/pedvspike Complex
Length = 301
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 7/211 (3%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
++ GS D +I +N TG+++ + +AH + SI++ P Y ++GS D + KLW++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 1856 KKCV-QTFFGHEADVNSVCFHPSGLA-FATGSEDKTARLFDI-RADQQIATYLPPNKNSG 1912
+ QTF GHE V V F+P + FA+G D+T +++ + ++ +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972
+ Y+ SDD + +WD + L GH + V+ P +++ S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 1973 DQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
D +K+W N+ +KV K N+ + +C+
Sbjct: 249 DGTLKIW---NSSTYKVEKTLNVGLERSWCI 276
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 9/191 (4%)
Query: 1708 VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767
+ GS D ++ +++ TG K ++ S+A + +V G D +++ N
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN- 129
Query: 1768 STGAAKVIRELLGYEGFLSSCRF--IDDTTLLTGSGDMKIVTWNL--ETGQRIHEVAQAH 1823
+ + G+E F+ F D +T +G D + W+L T Q
Sbjct: 130 ----WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 1824 IGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFAT 1883
+ V PD Y +T S D + K+WD++ K CV T GH ++V+ FHP+ +
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 1884 GSEDKTARLFD 1894
GSED T ++++
Sbjct: 246 GSEDGTLKIWN 256
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 12/191 (6%)
Query: 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853
TTL +G ++ WN ET + + Q V + + + GS D +++++
Sbjct: 30 TTLYSG----RVEIWNYETQVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84
Query: 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGF 1913
+ V F H + S+ HP+ +GS+D T +L++ + + +++ F
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH--F 142
Query: 1914 TSC-AVSSSGRYIFC-GSDDNNVHVWDLLKTTHNGVL-SGHENRVTSISLS--PNGMALV 1968
C A + F G D V VW L ++T N L +G E V + P+ ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 1969 TSSWDQFVKVW 1979
T+S D +K+W
Sbjct: 203 TASDDLTIKIW 213
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD--TWTGNKTQVIPLRSAWVMSVAFAQ 1744
+L+GH++ V+ + +SGS DG L IW+ T+ KT + L +W ++
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 1745 SGNFVACGGMDNMCTVYDL 1763
N++A G DN TV L
Sbjct: 283 RKNYIAS-GFDNGFTVLSL 300
>pdb|4J73|A Chain A, Crystal Structure Of Beta'-cop/p25 Complex
pdb|4J77|A Chain A, Crystal Structure Of Beta'-cop/hwbp1 Complex
pdb|4J77|B Chain B, Crystal Structure Of Beta'-cop/hwbp1 Complex
pdb|4J78|A Chain A, Crystal Structure Of Beta'-cop/emp47p Complex
pdb|4J81|A Chain A, Crystal Structure Of Beta'-cop/insig-1 Complex
pdb|4J81|B Chain B, Crystal Structure Of Beta'-cop/insig-1 Complex
pdb|4J82|A Chain A, Crystal Structure Of Beta'-cop/insig-2 Complex
pdb|4J82|B Chain B, Crystal Structure Of Beta'-cop/insig-2 Complex
pdb|4J84|A Chain A, Crystal Structure Of Beta'-cop/scyl1 Complex
pdb|4J84|B Chain B, Crystal Structure Of Beta'-cop/scyl1 Complex
pdb|4J86|A Chain A, Crystal Structure Of Beta'-cop/ywbp1 Complex
pdb|4J86|B Chain B, Crystal Structure Of Beta'-cop/ywbp1 Complex
Length = 301
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 7/211 (3%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
++ GS D +I +N TG+++ + +AH + SI++ P Y ++GS D + KLW++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 1856 KKCV-QTFFGHEADVNSVCFHPSGLA-FATGSEDKTARLFDI-RADQQIATYLPPNKNSG 1912
+ QTF GHE V V F+P + FA+G D+T +++ + ++ +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972
+ Y+ SDD + +WD + L GH + V+ P +++ S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 1973 DQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
D +K+W N+ +KV K N+ + +C+
Sbjct: 249 DGTLKIW---NSSTYKVEKTLNVGLERSWCI 276
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 9/191 (4%)
Query: 1708 VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767
+ GS D ++ +++ TG K ++ S+A + +V G D +++ N
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN- 129
Query: 1768 STGAAKVIRELLGYEGFLSSCRF--IDDTTLLTGSGDMKIVTWNL--ETGQRIHEVAQAH 1823
+ + G+E F+ F D +T +G D + W+L T Q
Sbjct: 130 ----WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 1824 IGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFAT 1883
+ V PD Y +T S D + K+WD++ K CV T GH ++V+ FHP+ +
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 1884 GSEDKTARLFD 1894
GSED T ++++
Sbjct: 246 GSEDGTLKIWN 256
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 12/191 (6%)
Query: 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853
TTL +G ++ WN ET + + Q V + + + GS D +++++
Sbjct: 30 TTLYSG----RVEIWNYETQVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84
Query: 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGF 1913
+ V F H + S+ HP+ +GS+D T +L++ + + +++ F
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH--F 142
Query: 1914 TSC-AVSSSGRYIFC-GSDDNNVHVWDLLKTTHNGVL-SGHENRVTSISLS--PNGMALV 1968
C A + F G D V VW L ++T N L +G E V + P+ ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 1969 TSSWDQFVKVW 1979
T+S D +K+W
Sbjct: 203 TASDDLTIKIW 213
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD--TWTGNKTQVIPLRSAWVMSVAFAQ 1744
+L+GH++ V+ + +SGS DG L IW+ T+ KT + L +W ++
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 1745 SGNFVACGGMDNMCTVYDL 1763
N++A G DN TV L
Sbjct: 283 RKNYIAS-GFDNGFTVLSL 300
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
Length = 814
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 7/211 (3%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
++ GS D +I +N TG+++ + +AH + SI++ P Y ++GS D + KLW++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 1856 KKCV-QTFFGHEADVNSVCFHPSGLA-FATGSEDKTARLFDI-RADQQIATYLPPNKNSG 1912
+ QTF GHE V V F+P + FA+G D+T +++ + ++ +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972
+ Y+ SDD + +WD + L GH + V+ P +++ S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 1973 DQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
D +K+W N+ +KV K N+ + +C+
Sbjct: 249 DGTLKIW---NSSTYKVEKTLNVGLERSWCI 276
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 9/192 (4%)
Query: 1707 CVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR 1766
+ GS D ++ +++ TG K ++ S+A + +V G D +++ N
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 1767 DSTGAAKVIRELLGYEGFLSSCRF--IDDTTLLTGSGDMKIVTWNL--ETGQRIHEVAQA 1822
+ + G+E F+ F D +T +G D + W+L T Q
Sbjct: 130 -----WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFA 1882
+ V PD Y +T S D + K+WD++ K CV T GH ++V+ FHP+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 1883 TGSEDKTARLFD 1894
+GSED T ++++
Sbjct: 245 SGSEDGTLKIWN 256
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 12/191 (6%)
Query: 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853
TTL +G ++ WN ET + + Q V + + + GS D +++++
Sbjct: 30 TTLYSG----RVEIWNYETQVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84
Query: 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGF 1913
+ V F H + S+ HP+ +GS+D T +L++ + + +++ F
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH--F 142
Query: 1914 TSC-AVSSSGRYIFC-GSDDNNVHVWDLLKTTHNGVL-SGHENRVTSISLS--PNGMALV 1968
C A + F G D V VW L ++T N L +G E V + P+ ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 1969 TSSWDQFVKVW 1979
T+S D +K+W
Sbjct: 203 TASDDLTIKIW 213
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD--TWTGNKTQVIPLRSAWVMSVAFAQ 1744
+L+GH++ V+ + +SGS DG L IW+ T+ KT + L +W ++
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 1745 SGNFVACGGMDNMCTVYDLNNRDST 1769
N++A G DN TV L N + T
Sbjct: 283 RKNYIAS-GFDNGFTVLSLGNDEPT 306
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 7/211 (3%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
++ GS D +I +N TG+++ + +AH + SI++ P Y ++GS D + KLW++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 1856 KKCV-QTFFGHEADVNSVCFHPSGLA-FATGSEDKTARLFDI-RADQQIATYLPPNKNSG 1912
+ QTF GHE V V F+P + FA+G D+T +++ + ++ +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972
+ Y+ SDD + +WD + L GH + V+ P +++ S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 1973 DQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
D +K+W N+ +KV K N+ + +C+
Sbjct: 249 DGTLKIW---NSSTYKVEKTLNVGLERSWCI 276
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 9/192 (4%)
Query: 1707 CVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR 1766
+ GS D ++ +++ TG K ++ S+A + +V G D +++ N
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 1767 DSTGAAKVIRELLGYEGFLSSCRF--IDDTTLLTGSGDMKIVTWNL--ETGQRIHEVAQA 1822
+ + G+E F+ F D +T +G D + W+L T Q
Sbjct: 130 -----WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFA 1882
+ V PD Y +T S D + K+WD++ K CV T GH ++V+ FHP+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 1883 TGSEDKTARLFD 1894
+GSED T ++++
Sbjct: 245 SGSEDGTLKIWN 256
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 12/191 (6%)
Query: 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853
TTL +G ++ WN ET + + Q V + + + GS D +++++
Sbjct: 30 TTLYSG----RVELWNYETQVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84
Query: 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGF 1913
+ V F H + S+ HP+ +GS+D T +L++ + + +++ F
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH--F 142
Query: 1914 TSC-AVSSSGRYIFC-GSDDNNVHVWDLLKTTHNGVL-SGHENRVTSISLS--PNGMALV 1968
C A + F G D V VW L ++T N L +G E V + P+ ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 1969 TSSWDQFVKVW 1979
T+S D +K+W
Sbjct: 203 TASDDLTIKIW 213
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD--TWTGNKTQVIPLRSAWVMSVAFAQ 1744
+L+GH++ V+ + +SGS DG L IW+ T+ KT + L +W ++
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 1745 SGNFVACGGMDNMCTVYDLNNRDST 1769
N++A G DN TV L N + T
Sbjct: 283 RKNYIAS-GFDNGFTVLSLGNDEPT 306
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 113/272 (41%), Gaps = 27/272 (9%)
Query: 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
+P +S KGH + V + D + +S S D L +WD TG Q + V SV
Sbjct: 56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI 115
Query: 1743 AQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-------DDTT 1795
+ + + G D V+ + + + LLG+ ++S R + D T
Sbjct: 116 DKKASXIISGSRDKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
+++ D + WNL Q I H ++ +++ SPDG + D LW+
Sbjct: 169 IISAGNDKXVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAA 227
Query: 1856 KKCVQTFFGHEADVNSVCFHPS----GLAFATG----SEDKTARLFDIRADQQIATYLPP 1907
KK T + +V S+ F P+ A ATG S D + D+R + A Y
Sbjct: 228 KKAXYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSKA 284
Query: 1908 NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939
+ S A S+ G+ +F G DN + VW +
Sbjct: 285 AEPHA-VSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 27/201 (13%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEV------AQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849
LL+ S D +++W L + V +HI V +L+ DG Y ++ S DK+ +
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI--VQDCTLTADGAYALSASWDKTLR 90
Query: 1850 LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP--- 1906
LWD + Q F GH++DV SV +GS DKT +++ I+ Q +AT L
Sbjct: 91 LWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG-QCLATLLGHND 149
Query: 1907 --------PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSI 1958
PN+ + S + S+G +D V W+L + GH + + ++
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAG-------NDKXVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 1959 SLSPNGMALVTSSWDQFVKVW 1979
+ SP+G + ++ D + +W
Sbjct: 203 TASPDGTLIASAGKDGEIXLW 223
>pdb|3J2T|A Chain A, An Improved Model Of The Human Apoptosome
pdb|3J2T|B Chain B, An Improved Model Of The Human Apoptosome
pdb|3J2T|C Chain C, An Improved Model Of The Human Apoptosome
pdb|3J2T|D Chain D, An Improved Model Of The Human Apoptosome
pdb|3J2T|E Chain E, An Improved Model Of The Human Apoptosome
pdb|3J2T|F Chain F, An Improved Model Of The Human Apoptosome
pdb|3J2T|G Chain G, An Improved Model Of The Human Apoptosome
Length = 1263
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 114/300 (38%), Gaps = 63/300 (21%)
Query: 1737 VMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF-IDDTT 1795
V F++ G +A G D V+ + TG + E+ +E + C F DD
Sbjct: 624 VYHACFSEDGQRIASCGADKTLQVF----KAETGEK--LLEIKAHEDEVLCCAFSTDDRF 677
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV--TGSVDKSCKLWDF 1853
+ T S D K+ WN TG+ +H + H V + + + TGS D KLWD
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDE-HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD---------IRADQQIATY 1904
+K+C T FGH VN F P A+ S D T +L+D I Q
Sbjct: 737 NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNL 796
Query: 1905 LPPNKNSGFT--SCAVSSSGRYIFCGSDDN----NVHVWDLLKTTHNGVLS--------- 1949
P ++ C+ S+ G I + + ++H LL H G S
Sbjct: 797 EDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSP 856
Query: 1950 -----------------------------GHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980
GH + V + SP+G + +TSS DQ +++W+
Sbjct: 857 QNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE 916
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/330 (19%), Positives = 119/330 (36%), Gaps = 70/330 (21%)
Query: 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQ 1744
+ ++ GH N VN +S D + S S DG L +WD + N+ + I ++
Sbjct: 742 RNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQ---------- 791
Query: 1745 SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMK 1804
+ LN D +VI + C + D + + K
Sbjct: 792 ----------------FFLNLEDPQEDMEVI---------VKCCSWSADGARIMVAAKNK 826
Query: 1805 IVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG 1864
I +++ T + E+ H + SP V +LW+ + V G
Sbjct: 827 IFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRG 886
Query: 1865 HEADVNSVCFHPSGLAFATGSEDKTARLFD---------IRADQQIATYLPPNK------ 1909
H + V+ V F P G +F T S+D+T RL++ + Q++ N+
Sbjct: 887 HLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAV 946
Query: 1910 --------------------NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS 1949
+ + C +S +YI G ++ + + +L+
Sbjct: 947 DHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRF 1006
Query: 1950 GHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
H+ V I + + L++SS D ++VW
Sbjct: 1007 QHKKTVWHIQFTADEKTLISSSDDAEIQVW 1036
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 17/204 (8%)
Query: 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN 1747
L+GH V +SR +S S DG + +W+ TGNK + V+S +
Sbjct: 1046 LRGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT 1104
Query: 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF-IDDTTLLTGSGDMKIV 1806
+ D ++ + + EL G+ G + F +D T L TG + +I
Sbjct: 1105 KFSSTSADKTAKIWSFD------LLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIR 1158
Query: 1807 TWNLETGQRIH-------EVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCV 1859
WN+ G+ +H E A H G V + SPDG+ + S K W+ +
Sbjct: 1159 IWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLI--SAGGYIKWWNVVTGESS 1216
Query: 1860 QTFFGHEADVNSVCFHPSGLAFAT 1883
QTF+ + ++ + P + T
Sbjct: 1217 QTFYTNGTNLKKIHVSPDFKTYVT 1240
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 9/198 (4%)
Query: 1778 LLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ 1837
L G++ + R + ++ LL+ S D + WN+ TG + + H G V+S +S D
Sbjct: 1046 LRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFV-CHQGTVLSCDISHDAT 1104
Query: 1838 YFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA 1897
F + S DK+ K+W F + GH V F ATG ++ R++++
Sbjct: 1105 KFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSN 1164
Query: 1898 DQQIATYLPPNKNSG------FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH 1951
+ + P ++ T S G+ + S + W+++ + +
Sbjct: 1165 GELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLI--SAGGYIKWWNVVTGESSQTFYTN 1222
Query: 1952 ENRVTSISLSPNGMALVT 1969
+ I +SP+ VT
Sbjct: 1223 GTNLKKIHVSPDFKTYVT 1240
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 4/163 (2%)
Query: 1819 VAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG 1878
V + H V S DGQ + DK+ +++ + + HE +V F
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDD 675
Query: 1879 LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFC--GSDDNNVHV 1936
AT S DK ++++ + + TY + C ++S ++ GS D + +
Sbjct: 676 RFIATCSVDKKVKIWNSMTGELVHTY--DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 1937 WDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
WDL + + GH N V SP+ L + S D +K+W
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 117/305 (38%), Gaps = 35/305 (11%)
Query: 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNF 1748
+GH++ V+ V +S D ++ S D + +W+T K + L+ + V F + N
Sbjct: 885 RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQE--VDVVFQE--NE 940
Query: 1749 VACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTW 1808
V +D++ + +N R TG + E SC + GD
Sbjct: 941 VMVLAVDHIRRLQLINGR--TGQIDYLTEAQ------VSCCCLSPHLQYIAFGDENGAIE 992
Query: 1809 NLE-TGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA 1867
LE RI + H V I + D + ++ S D ++W+++ KC+ GH+
Sbjct: 993 ILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQE 1051
Query: 1868 DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFT-------SCAVSS 1920
V + + S D T ++++I + NK F SC +S
Sbjct: 1052 TVKDFRLLKNS-RLLSWSFDGTVKVWNI---------ITGNKEKDFVCHQGTVLSCDISH 1101
Query: 1921 SGRYIFCGSDDNNVHVW--DLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKV 1978
S D +W DLL H L GH V + S + L T + +++
Sbjct: 1102 DATKFSSTSADKTAKIWSFDLLLPLHE--LRGHNGCVRCSAFSVDSTLLATGDDNGEIRI 1159
Query: 1979 WQESN 1983
W SN
Sbjct: 1160 WNVSN 1164
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 1682 LMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI-PL-------R 1733
L+P L+GH V +S DS +G +G++ IW+ G + PL
Sbjct: 1123 LLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATH 1182
Query: 1734 SAWVMSVAFAQSGNFVACGG 1753
WV + F+ G + G
Sbjct: 1183 GGWVTDLCFSPDGKMLISAG 1202
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 105/196 (53%), Gaps = 8/196 (4%)
Query: 1700 YSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCT 1759
+S DS++ +G+ GK+ I+ +G K + R +++S+A++ G ++A G +D +
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHE 1818
++D+ +TG K++ L G+ + S F D+ LL T S D I ++++ +
Sbjct: 190 IFDI----ATG--KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAG 242
Query: 1819 VAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG 1878
H V++++ PD +FV+ S DKS K+WD + CV TFF H+ V V ++ +G
Sbjct: 243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG 302
Query: 1879 LAFATGSEDKTARLFD 1894
+ +D+ ++D
Sbjct: 303 SKIVSVGDDQEIHIYD 318
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 124/291 (42%), Gaps = 34/291 (11%)
Query: 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQV---IPLRSAWVMSVAFAQSGNFVACGGMDNMCT 1759
+S V+GSLD + +W W + + + V+SV + + A +D
Sbjct: 47 NSETVVTGSLDDLVKVW-KWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105
Query: 1760 VYDLNNRD---STGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRI 1816
++DL N S A V L + D L TG+ K+ + +E+G++
Sbjct: 106 LWDLENGKQIKSIDAGPVDAWTLAFSP--------DSQYLATGTHVGKVNIFGVESGKKE 157
Query: 1817 HEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHP 1876
+ + ++SI+ SPDG+Y +G++D ++D K + T GH + S+ F P
Sbjct: 158 YSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 216
Query: 1877 SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN---- 1932
T S+D +++D++ T SG S ++ + FC D +
Sbjct: 217 DSQLLVTASDDGYIKIYDVQHANLAGTL------SGHASWVLNVA----FCPDDTHFVSS 266
Query: 1933 ----NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
+V VWD+ T H+++V + + NG +V+ DQ + ++
Sbjct: 267 SSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
+L+GH + S+ +S DS+ V+ S DG + I+D N + ++WV++VAF
Sbjct: 201 TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 129/314 (41%), Gaps = 35/314 (11%)
Query: 1639 LQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSV 1698
LQ + E ++ + C + ++ + L D T + D K L K+ L GH V +
Sbjct: 123 LQRIHCRSETSKGV-YCLQYDDQKIVSGLRDNTIKIWD--KNTLECKRILTGHTGSVLCL 179
Query: 1699 HYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMC 1758
Y D R ++GS D + +WD TG + V+ + F +G V C D
Sbjct: 180 QY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF-NNGMMVTCS-KDRSI 235
Query: 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHE 1818
V+D+ S + R L+G+ ++ F DD +++ SGD I WN T + +
Sbjct: 236 AVWDMA---SPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRT 291
Query: 1819 VAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG 1878
+ G L + V+GS D + +LWD C++ GHE V C
Sbjct: 292 LNGHKRGIAC---LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDN 346
Query: 1879 LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC---AVSSSGRY---------IF 1926
+G+ D +++D+ A L P +G T C V SGR I
Sbjct: 347 KRIVSGAYDGKIKVWDLVA------ALDPRAPAG-TLCLRTLVEHSGRVFRLQFDEFQIV 399
Query: 1927 CGSDDNNVHVWDLL 1940
S D+ + +WD L
Sbjct: 400 SSSHDDTILIWDFL 413
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 8/192 (4%)
Query: 1788 CRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847
C DD +++G D I W+ T + + H G V + L D + +TGS D +
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSV--LCLQYDERVIITGSSDST 194
Query: 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP 1907
++WD + + T H V + F+ +G+ T S+D++ ++D+ + I
Sbjct: 195 VRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGM-MVTCSKDRSIAVWDMASPTDITLRRVL 252
Query: 1908 NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMAL 1967
+ + V +YI S D + VW+ L+GH+ + L +
Sbjct: 253 VGHRAAVN-VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA--CLQYRDRLV 309
Query: 1968 VTSSWDQFVKVW 1979
V+ S D +++W
Sbjct: 310 VSGSSDNTIRLW 321
>pdb|4JSP|D Chain D, Structure Of Mtordeltan-mlst8-atpgammas-mg Complex
pdb|4JSP|C Chain C, Structure Of Mtordeltan-mlst8-atpgammas-mg Complex
pdb|4JSV|D Chain D, Mtor Kinase Structure, Mechanism And Regulation.
pdb|4JSV|C Chain C, Mtor Kinase Structure, Mechanism And Regulation.
pdb|4JSN|D Chain D, Structure Of Mtordeltan-mlst8 Complex
pdb|4JSN|C Chain C, Structure Of Mtordeltan-mlst8 Complex
pdb|4JSX|D Chain D, Structure Of Mtordeltan-mlst8-torin2 Complex
pdb|4JSX|C Chain C, Structure Of Mtordeltan-mlst8-torin2 Complex
pdb|4JT5|D Chain D, Mtordeltan-mlst8-pp242 Complex
pdb|4JT5|C Chain C, Mtordeltan-mlst8-pp242 Complex
pdb|4JT6|D Chain D, Structure Of Mtordeltan-mlst8-pi-103 Complex
pdb|4JT6|C Chain C, Structure Of Mtordeltan-mlst8-pi-103 Complex
Length = 326
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 11/167 (6%)
Query: 1826 DVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC-VQTFFGHEADVNSVCFHPSGLAFATG 1884
++ S+ DG++ TG D + ++WD R + Q F A +N VC HP+ G
Sbjct: 87 NIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQAELIVG 146
Query: 1885 SEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTH 1944
+ ++D++ D L P TS + Y+ + N +VW+L
Sbjct: 147 DQSGAIHIWDLKTDHN--EQLIPEPEVSITSAHIDPDASYMAAVNSTGNCYVWNLTGGIG 204
Query: 1945 NGV--------LSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983
+ V + H SP+ L T S DQ K+W+ SN
Sbjct: 205 DEVTQLIPKTKIPAHTRYALQCRFSPDSTLLATCSADQTCKIWRTSN 251
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 13/235 (5%)
Query: 1657 EEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINK-VNSVHYSGDSRHCVSGSLDGK 1715
E + T ED TA + D L ++ + +N +N V + + G G
Sbjct: 94 HEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQ--VNAPINCVCLHPNQAELIVGDQSGA 151
Query: 1716 LIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVI 1775
+ IWD T + Q+IP + S +++A C V++L ++I
Sbjct: 152 IHIWDLKTDHNEQLIPEPEVSITSAHIDPDASYMAAVNSTGNCYVWNLTGGIGDEVTQLI 211
Query: 1776 --RELLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEV-------AQAHIG 1825
++ + + CRF D+TLL T S D W + E+ ++ G
Sbjct: 212 PKTKIPAHTRYALQCRFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSGNPGESSRG 271
Query: 1826 DVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLA 1880
+ + S D QY VT S D +LW + + + GH+ V + F+ S L
Sbjct: 272 WMWGCAFSGDSQYIVTASSDNLARLWCVETGEIKREYGGHQKAVVCLAFNDSVLG 326
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 29/244 (11%)
Query: 1737 VMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTL 1796
+ SV F + G ++ GG D ++DL +R+ + R C + L
Sbjct: 88 IASVGFHEDGRWMYTGGEDCTARIWDLRSRN----LQCQRIFQVNAPINCVCLHPNQAEL 143
Query: 1797 LTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF--- 1853
+ G I W+L+T + + + + S + PD Y + +C +W+
Sbjct: 144 IVGDQSGAIHIWDLKTDHNEQLIPEPEV-SITSAHIDPDASYMAAVNSTGNCYVWNLTGG 202
Query: 1854 ----------REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARL-----FDIRAD 1898
+ K T + + F P AT S D+T ++ F + +
Sbjct: 203 IGDEVTQLIPKTKIPAHTRYALQCR-----FSPDSTLLATCSADQTCKIWRTSNFSLMTE 257
Query: 1899 QQIATYLPPNKNSGFT-SCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTS 1957
I + P + G+ CA S +YI S DN +W + GH+ V
Sbjct: 258 LSIKSGNPGESSRGWMWGCAFSGDSQYIVTASSDNLARLWCVETGEIKREYGGHQKAVVC 317
Query: 1958 ISLS 1961
++ +
Sbjct: 318 LAFN 321
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 9/190 (4%)
Query: 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851
D L T D + W +G V Q V ++ ++PD + + + + +++
Sbjct: 11 DPVILATAGYDHTVRFWQAHSGICTRTV-QHQDSQVNALEVTPD-RSMIAAAGYQHIRMY 68
Query: 1852 DFREKKC--VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNK 1909
D + ++ G ++ SV FH G TG ED TAR++D+R+ + +
Sbjct: 69 DLNSNNPNPIISYDGVNKNIASVGFHEDGRWMYTGGEDCTARIWDLRS-RNLQCQRIFQV 127
Query: 1910 NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN-GVLSGHENRVTSISLSPNG--MA 1966
N+ + + + G +H+WD LKT HN ++ E +TS + P+ MA
Sbjct: 128 NAPINCVCLHPNQAELIVGDQSGAIHIWD-LKTDHNEQLIPEPEVSITSAHIDPDASYMA 186
Query: 1967 LVTSSWDQFV 1976
V S+ + +V
Sbjct: 187 AVNSTGNCYV 196
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 6/152 (3%)
Query: 1831 SLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTA 1890
++ D T D + + W C +T ++ VN++ P A +
Sbjct: 7 TVGSDPVILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEVTPDRSMIAAAGY-QHI 65
Query: 1891 RLFDIRAD--QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVL 1948
R++D+ ++ I +Y NKN S GR+++ G +D +WDL
Sbjct: 66 RMYDLNSNNPNPIISYDGVNKN--IASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQR 123
Query: 1949 SGHENR-VTSISLSPNGMALVTSSWDQFVKVW 1979
N + + L PN L+ + +W
Sbjct: 124 IFQVNAPINCVCLHPNQAELIVGDQSGAIHIW 155
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron
Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite Degron
Recognition By ApcC
Length = 431
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 130/283 (45%), Gaps = 25/283 (8%)
Query: 1711 SLDGKLIIWDTWTGNKTQVIPLR--SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS 1768
+LD + +W +G+ Q++ + ++ SVA+ + GN++A G ++D+ +
Sbjct: 133 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-- 190
Query: 1769 TGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVA--QAHIGD 1826
K +R + + + S + + L +GS I ++ + H VA H +
Sbjct: 191 ----KRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAE--HHVATLSGHSQE 243
Query: 1827 VVSISLSPDGQYFVTGSVDKSCKLWDFREKKC----VQTFFGHEADVNSVCFHP---SGL 1879
V + +PDG++ +G D +W + +QTF H+ V +V + P + L
Sbjct: 244 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 303
Query: 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD--DNNVHVW 1937
A G+ D+ R++++ + ++ + +S S S + + G N + +W
Sbjct: 304 ATGGGTSDRHIRIWNVCSGACLSAV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIW 360
Query: 1938 DLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980
L GH +RV S+++SP+G + +++ D+ +++W+
Sbjct: 361 KYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 26/179 (14%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS-----AWVMSVA 1741
+L GH +V + ++ D RH SG D + +W + G V PL++ V +VA
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-PLQTFTQHQGAVKAVA 294
Query: 1742 FA-QSGNFVACGG--------MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID 1792
+ N +A GG + N+C+ L+ D+ I Y+ +S F
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 354
Query: 1793 DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851
+ ++V W T ++ E+ + H V+S+++SPDG + + D++ +LW
Sbjct: 355 N----------QLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 130/283 (45%), Gaps = 25/283 (8%)
Query: 1711 SLDGKLIIWDTWTGNKTQVIPLR--SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS 1768
+LD + +W +G+ Q++ + ++ SVA+ + GN++A G ++D+ +
Sbjct: 122 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-- 179
Query: 1769 TGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVA--QAHIGD 1826
K +R + + + S + + L +GS I ++ + H VA H +
Sbjct: 180 ----KRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAE--HHVATLSGHSQE 232
Query: 1827 VVSISLSPDGQYFVTGSVDKSCKLWDFREKKC----VQTFFGHEADVNSVCFHP---SGL 1879
V + +PDG++ +G D +W + +QTF H+ V +V + P + L
Sbjct: 233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 292
Query: 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD--DNNVHVW 1937
A G+ D+ R++++ + ++ + +S S S + + G N + +W
Sbjct: 293 ATGGGTSDRHIRIWNVCSGACLSAV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIW 349
Query: 1938 DLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980
L GH +RV S+++SP+G + +++ D+ +++W+
Sbjct: 350 KYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 26/179 (14%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS-----AWVMSVA 1741
+L GH +V + ++ D RH SG D + +W + G V PL++ V +VA
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-PLQTFTQHQGAVKAVA 283
Query: 1742 FA-QSGNFVACGG--------MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID 1792
+ N +A GG + N+C+ L+ D+ I Y+ +S F
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 343
Query: 1793 DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851
+ ++V W T ++ E+ + H V+S+++SPDG + + D++ +LW
Sbjct: 344 N----------QLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 17/210 (8%)
Query: 1786 SSCRFID----DTTLLTGSGDMKIVTWNLETGQRIHE--VAQAHIGDVVSISLSPDGQYF 1839
S C F+ T L + GD +I W E I + +++ H V ++ SP G Y
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL 76
Query: 1840 VTGSVDKSCKLWDFREK--KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA 1897
+ S D + +W + +CV T GHE +V SV + PSG AT S DK+ ++++
Sbjct: 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136
Query: 1898 DQQIATYLPPNKNSGFTSCAV-SSSGRYIFCGSDDNNVHVWDLLKTTHN-----GVLSGH 1951
+ + N ++ V S + S D+ V L + + L GH
Sbjct: 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK---LYREEEDDWVCCATLEGH 193
Query: 1952 ENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981
E+ V S++ P+G L + S D+ V++W++
Sbjct: 194 ESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 19/180 (10%)
Query: 1821 QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK---KCVQTFFGHEADVNSVCFHPS 1877
+ H +V S++ +P G T S DKS +W+ E+ +CV H DV V +HPS
Sbjct: 102 EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS 161
Query: 1878 GLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVW 1937
A+ S D T +L+ D + S S A SG+ + SDD V +W
Sbjct: 162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Query: 1938 -DLLKTTHNGV--------------LSG-HENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981
L GV LSG H + I+ AL T+ D ++V+QE
Sbjct: 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 1874 FHPSGLAFATGSEDKTARLFDIRADQQIA-TYLPPNKNSGFTSCAVSSSGRYIFCGSDDN 1932
++P+G A+ D+ R++ D I + L A S G Y+ S D
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 1933 NVHVWDLLKTTHNGV--LSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVL 1990
+W + V L GHEN V S++ +P+G L T S D+ V VW+ ++ +
Sbjct: 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV 143
Query: 1991 KVYNLEKKTI 2000
V N + +
Sbjct: 144 SVLNSHTQDV 153
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In
Complex With Initiation Factor 1. This File Contains The
40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In
Complex With Initiation Factor 1. This File Contains The
40s Subunit And Initiation Factor For Molecule 2
pdb|4BPE|R Chain R, The Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Eif1 And Eif1a - Complex 1
pdb|4BPN|R Chain R, The Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Eif1 And Eif1a - Complex 2
pdb|4BPO|R Chain R, The Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Eif1 And Eif1a - Complex 3
pdb|4BPP|R Chain R, The Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Eif1 And Eif1a - Complex 4
Length = 343
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 25/208 (12%)
Query: 1792 DDTTLLTGSGDMKIVTWNLETGQR------IHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845
D L++GS D ++ W L ++ H+ H V ++LS + + ++ S D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 1846 KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL 1905
K+ +LWD R + F GH+++V SV F P + ++ +L++I + + ++
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE 157
Query: 1906 PPNKNSGFTSCA-----------VSSSGRYIFCGSDDNNVHVWDL---LKTTHNGVLSGH 1951
N +S + SC V Y D + VW+ ++ T H
Sbjct: 158 KEN-HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYT----FKAH 212
Query: 1952 ENRVTSISLSPNGMALVTSSWDQFVKVW 1979
E+ V +S+SPNG + T D+ + +W
Sbjct: 213 ESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 111/267 (41%), Gaps = 21/267 (7%)
Query: 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
+P K+L GH + V+ + S ++ +S S D L +WD TG + + V SVAF
Sbjct: 67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 1743 AQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRE-----LLGYEGFLSSCRFIDDTTLL 1797
+ + G + ++++ +A+ + Y + S +
Sbjct: 127 SPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY 186
Query: 1798 TGS--GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
S D ++ WN T +I +AH +V +S+SP+G+Y TG DK +WD
Sbjct: 187 FASVGWDGRLKVWN--TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
Query: 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD-----------IRADQQIATY 1904
Q F + +N + F+P A G+ D+ ++F+ I A+
Sbjct: 245 LTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAE 303
Query: 1905 LPPNKNSGFTSCAVSSSGRYIFCGSDD 1931
KN TS A ++ G+ +F G D
Sbjct: 304 GQKGKNPQCTSLAWNALGKKLFAGFTD 330
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 124/282 (43%), Gaps = 18/282 (6%)
Query: 1707 CVSGSLDGKLIIWDTWTGNKTQVIPL-RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765
V+ +L+ + +W+ +G+ + + S +V SV ++ G+F++ G + + +YD+ +
Sbjct: 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165
Query: 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIG 1825
+ +R + G++ + C + L +GS I ++ Q H
Sbjct: 166 QTK------LRTMAGHQARVG-CLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218
Query: 1826 DVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHP---SGLAFA 1882
+V ++ DG +G D ++WD R T H A V +V + P + LA
Sbjct: 219 EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATG 278
Query: 1883 TGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFC--GSDDNNVHVWDLL 1940
G+ DK ++ ++ T + S TS S + I G DNN+ +W
Sbjct: 279 GGTMDKQIHFWNAATGARVNTV---DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS 335
Query: 1941 KT--THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980
+ T + H+ RV +LSP+G L T++ D+ +K W+
Sbjct: 336 SSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377
Score = 34.3 bits (77), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 32/181 (17%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF-AQS 1745
+L+GH ++V + + D SG D + IWD + +A V +VA+
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271
Query: 1746 GNFVACGG--MD------NMCTVYDLNNRDSTGAAKVI------RELLGYEGFLSSCRFI 1791
N +A GG MD N T +N D+ + +E++ GF
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF------- 324
Query: 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEV-AQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850
D + W+ + +V AH V+ +LSPDG+ T + D++ K
Sbjct: 325 ---------PDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375
Query: 1851 W 1851
W
Sbjct: 376 W 376
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 47/185 (25%)
Query: 1802 DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQT 1861
+ + WN ++G V S+ S DG + G + ++D + ++T
Sbjct: 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT 171
Query: 1862 FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR-ADQQIATYLPPNKNSGFTSCAVSS 1920
GH+A V C + ++GS D+R A+ QI
Sbjct: 172 MAGHQARVG--CLSWNRHVLSSGSRSGAIHHHDVRIANHQI------------------- 210
Query: 1921 SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980
G L GH + V ++ +G+ L + D V++W
Sbjct: 211 -------------------------GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD 245
Query: 1981 ESNTI 1985
++I
Sbjct: 246 ARSSI 250
>pdb|4JXM|A Chain A, Crystal Structure Of Rrp9 Wd40 Repeats
Length = 371
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 105/226 (46%), Gaps = 27/226 (11%)
Query: 1771 AAKVIRELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQRIHEVAQA------ 1822
A+ IR L G++ +C + DD+ + + + D I+ W++E+G+++H + +A
Sbjct: 36 ASADIRVLRGHQ-LSITCLVVTPDDSAIFSAAKDCSIIKWSVESGRKLHVIPRAKKGAEG 94
Query: 1823 ----HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG 1878
H V+ +++S DG+Y +G K +W+ + + + TF GH V+ + F
Sbjct: 95 KPPGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRRGT 154
Query: 1879 LAFATGSEDKTARLFDIRADQQIATYLPPNK-----NSGFTSCAVSSSGRYIFCGSDDNN 1933
+ S D++ +++++ + + T ++ C V++ GR D
Sbjct: 155 HQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGR-------DGT 207
Query: 1934 VHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
V VW + + + V GH+ + I L N +V+ + D V +W
Sbjct: 208 VRVWKIPEESQL-VFYGHQGSIDCIHL-INEEHMVSGADDGSVALW 251
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/287 (20%), Positives = 103/287 (35%), Gaps = 65/287 (22%)
Query: 1666 KLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN 1725
+L+ + A AP + + L+GH + + + D S + D +I W +G
Sbjct: 23 RLQKLVAKEIQAPASADI--RVLRGHQLSITCLVVTPDDSAIFSAAKDCSIIKWSVESGR 80
Query: 1726 KTQVIPL-----------RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKV 1774
K VIP S+ V+ +A + G ++A G
Sbjct: 81 KLHVIPRAKKGAEGKPPGHSSHVLCMAISSDGKYLASG---------------------- 118
Query: 1775 IRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834
D + L I+ W ++ Q ++ H V ++
Sbjct: 119 -----------------DRSKL--------ILIWEAQSCQHLYTFT-GHRDAVSGLAFRR 152
Query: 1835 DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894
+ S D+S K+W+ E V+T FGH+ V ++ G D T R++
Sbjct: 153 GTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWK 212
Query: 1895 IRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941
I + Q+ Y + G C + ++ G+DD +V +W L K
Sbjct: 213 IPEESQLVFY----GHQGSIDCIHLINEEHMVSGADDGSVALWGLSK 255
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 103/286 (36%), Gaps = 58/286 (20%)
Query: 1678 PKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD--------TWTGNKTQV 1729
P+ K + GH + V + S D ++ SG ++IW+ T+TG++ V
Sbjct: 86 PRAKKGAEGKPPGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTGHRDAV 145
Query: 1730 IPL---------------RSAWVMSVA--------FAQSGNFVACGGMDNMCTVYDLNNR 1766
L RS V +VA F A + C V R
Sbjct: 146 SGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCV-TAGGR 204
Query: 1767 DSTGAAKVIRE-----LLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ 1821
D T I E G++G + I++ +++G+ D + W L + + +
Sbjct: 205 DGTVRVWKIPEESQLVFYGHQGSIDCIHLINEEHMVSGADDGSVALWGLSKKRPLALQRE 264
Query: 1822 AH--IGD--------VVSISLSPDGQYFVTGSVDKSCKLWD----FREKK--CVQTFFGH 1865
AH G+ + S++ + TGS +LW FR+ C G
Sbjct: 265 AHGLRGEPGLEQPFWISSVAALLNTDLVATGSHSSCVRLWQCGEGFRQLDLLCDIPLVGF 324
Query: 1866 EADVNSVCFHPSG--LAFATGSEDKTARLFDIRADQQIATYLPPNK 1909
+NS+ F SG L G E + R + I+ + +P +
Sbjct: 325 ---INSLKFSSSGDFLVAGVGQEHRLGRWWRIKEARNSVCIIPLRR 367
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 23/218 (10%)
Query: 1794 TTLLTGSGDMKIVTW-NLETGQRIHE-----VAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847
+ L GS D + W E+ R E + + H +V ++ S DG Y T S DKS
Sbjct: 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS 130
Query: 1848 CKLWDFREK----KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLF-DIRADQQIA 1902
+W+ E +C+ H DV V +HPS A+ S D T R++ D D +
Sbjct: 131 VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV 190
Query: 1903 TYLPPNKNSGFTSCAVSSSGRYIFC-GSDDNNVHVWDLLKTTHN--------GVLSG-HE 1952
L ++ + ++S + G + C GSDD+ V VW + + +L H+
Sbjct: 191 AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250
Query: 1953 NRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVL 1990
+V +++ NG+ + + D + V++E + WKV
Sbjct: 251 RQVYNVAWGFNGL-IASVGADGVLAVYEEVDG-EWKVF 286
Score = 40.4 bits (93), Expect = 0.011, Method: Composition-based stats.
Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 53/217 (24%)
Query: 1796 LLTGSGD--MKIVTWNLETGQRIHEVAQ-AHIGDVVSISLSPDGQYFVTGSVDKSCKLWD 1852
L TGS D +K+V+ + I + + AH + S++ P GS D + +W
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86
Query: 1853 FREKKCVQTF--------FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY 1904
+E+ +TF GHE +V V + G AT S DK+ +++
Sbjct: 87 -KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE---------- 135
Query: 1905 LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNG 1964
SG C S VL H V + P+
Sbjct: 136 -------------TDESGEEYECIS-----------------VLQEHSQDVKHVIWHPSE 165
Query: 1965 MALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIF 2001
L +SS+D V++W++ + W+ + V N + T++
Sbjct: 166 ALLASSSYDDTVRIWKDYDDD-WECVAVLNGHEGTVW 201
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDT-WTGNKTQVIPL---RSAWVMSVAFA 1743
++GH N+V V +S D + + S D + IW+T +G + + I + S V V +
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT----LLTG 1799
S +A D+ ++ +D + + L G+EG + S F D T L +G
Sbjct: 163 PSEALLASSSYDDTVRIW----KDYDDDWECVAVLNGHEGTVWSSDF-DKTEGVFRLCSG 217
Query: 1800 SGDMKIVTW 1808
S D + W
Sbjct: 218 SDDSTVRVW 226
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 130/283 (45%), Gaps = 25/283 (8%)
Query: 1711 SLDGKLIIWDTWTGNKTQVIPLR--SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS 1768
+LD + +W +G+ Q++ + ++ SVA+ + GN++A G ++D+ +
Sbjct: 42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-- 99
Query: 1769 TGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVA--QAHIGD 1826
K +R + + + S + + L +GS I ++ + H VA H +
Sbjct: 100 ----KRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAE--HHVATLSGHSQE 152
Query: 1827 VVSISLSPDGQYFVTGSVDKSCKLWDFREKKC----VQTFFGHEADVNSVCFHP---SGL 1879
V + +PDG++ +G D +W + +QTF H+ V +V + P + L
Sbjct: 153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 212
Query: 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD--DNNVHVW 1937
A G+ D+ R++++ + ++ + +S S S + + G N + +W
Sbjct: 213 ATGGGTSDRHIRIWNVCSGACLSAV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIW 269
Query: 1938 DLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980
L GH +RV S+++SP+G + +++ D+ +++W+
Sbjct: 270 KYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 26/179 (14%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS-----AWVMSVA 1741
+L GH +V + ++ D RH SG D + +W + G V PL++ V +VA
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-PLQTFTQHQGAVKAVA 203
Query: 1742 FA-QSGNFVACGG--------MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID 1792
+ N +A GG + N+C+ L+ D+ I Y+ +S F
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263
Query: 1793 DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851
+ ++V W T ++ E+ + H V+S+++SPDG + + D++ +LW
Sbjct: 264 N----------QLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|4J0W|A Chain A, Structure Of U3-55k
Length = 343
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 103/222 (46%), Gaps = 27/222 (12%)
Query: 1775 IRELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQRIHEVAQA---------- 1822
IR L G++ +C + DD+ + + + D I+ W++E+G+++H + +A
Sbjct: 7 IRVLRGHQ-LSITCLVVTPDDSAIFSAAKDCSIIKWSVESGRKLHVIPRAKKGAEGKPPG 65
Query: 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFA 1882
H V+ +++S DG+Y +G K +W+ + + + TF GH V+ + F
Sbjct: 66 HSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRRGTHQLY 125
Query: 1883 TGSEDKTARLFDIRADQQIATYLPPNK-----NSGFTSCAVSSSGRYIFCGSDDNNVHVW 1937
+ S D++ +++++ + + T ++ C V++ GR D V VW
Sbjct: 126 STSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGR-------DGTVRVW 178
Query: 1938 DLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
+ + + V GH+ + I L N +V+ + D V +W
Sbjct: 179 KIPEESQL-VFYGHQGSIDCIHLI-NEEHMVSGADDGSVALW 218
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/278 (19%), Positives = 98/278 (35%), Gaps = 68/278 (24%)
Query: 1675 PDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL-- 1732
P+A +++ L+GH + + + D S + D +I W +G K VIP
Sbjct: 2 PEAADIRV-----LRGHQLSITCLVVTPDDSAIFSAAKDCSIIKWSVESGRKLHVIPRAK 56
Query: 1733 ---------RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG 1783
S+ V+ +A + G ++A G +
Sbjct: 57 KGAEGKPPGHSSHVLCMAISSDGKYLASGDRSKL-------------------------- 90
Query: 1784 FLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS 1843
I+ W ++ Q ++ H V ++ + S
Sbjct: 91 ---------------------ILIWEAQSCQHLYTFT-GHRDAVSGLAFRRGTHQLYSTS 128
Query: 1844 VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIAT 1903
D+S K+W+ E V+T FGH+ V ++ G D T R++ I + Q+
Sbjct: 129 HDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVF 188
Query: 1904 YLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941
Y + G C + ++ G+DD +V +W L K
Sbjct: 189 Y----GHQGSIDCIHLINEEHMVSGADDGSVALWGLSK 222
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 102/283 (36%), Gaps = 58/283 (20%)
Query: 1678 PKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD--------TWTGNKTQV 1729
P+ K + GH + V + S D ++ SG ++IW+ T+TG++ V
Sbjct: 53 PRAKKGAEGKPPGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTGHRDAV 112
Query: 1730 IPL---------------RSAWVMSVA--------FAQSGNFVACGGMDNMCTVYDLNNR 1766
L RS V +VA F A + C V R
Sbjct: 113 SGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCV-TAGGR 171
Query: 1767 DSTGAAKVIRE-----LLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ 1821
D T I E G++G + I++ +++G+ D + W L + + +
Sbjct: 172 DGTVRVWKIPEESQLVFYGHQGSIDCIHLINEEHMVSGADDGSVALWGLSKKRPLALQRE 231
Query: 1822 AH--IGD--------VVSISLSPDGQYFVTGSVDKSCKLWD----FREKK--CVQTFFGH 1865
AH G+ + S++ + TGS +LW FR+ C G
Sbjct: 232 AHGLRGEPGLEQPFWISSVAALLNTDLVATGSHSSCVRLWQCGEGFRQLDLLCDIPLVGF 291
Query: 1866 EADVNSVCFHPSG--LAFATGSEDKTARLFDIRADQQIATYLP 1906
+NS+ F SG L G E + R + I+ + +P
Sbjct: 292 ---INSLKFSSSGDFLVAGVGQEHRLGRWWRIKEARNSVCIIP 331
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 23/227 (10%)
Query: 1778 LLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ 1837
L G+ + +C +D ++TG+ D I ++ + + +++ H G V ++ + G
Sbjct: 117 LRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG- 174
Query: 1838 YFVTGSVDKSCKLWDFREKKCVQTFFGHEADVN--SVCFHPSGLAFATGSEDKTARLFDI 1895
V+GS D++ ++WD ++ C F GH + V + + + TGS D T ++ +
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 1896 RADQQI----------ATYLPPNKNSGFTSC---------AVSSSGRYIFCGSDDNNVHV 1936
+ + + P +N F VS G + GS DN + V
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 1937 WDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983
WD+ + +LSGH +R+ S +++S D +++W N
Sbjct: 295 WDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN 341
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 19/215 (8%)
Query: 1676 DAPKVKLMPKKS------LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQV 1729
D P V P+++ L+GH V +V SG VSGS D LI+WD +
Sbjct: 248 DYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYI 305
Query: 1730 IPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCR 1789
+ + + S + D ++DL N ++ L G+ + R
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN------GELXYTLQGHTALVGLLR 359
Query: 1790 FIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849
+ D L++ + D I W+ R ++ + + +S + V+GS +
Sbjct: 360 -LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN--ILVSGS-ENQFN 415
Query: 1850 LWDFREKKCVQTFFGHEAD-VNSVCFHPSGLAFAT 1883
+++ R K V +AD + SV F L A
Sbjct: 416 IYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAV 450
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 23/227 (10%)
Query: 1778 LLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ 1837
L G+ + +C +D ++TG+ D I ++ + + +++ H G V ++ + G
Sbjct: 117 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG- 174
Query: 1838 YFVTGSVDKSCKLWDFREKKCVQTFFGHEADVN--SVCFHPSGLAFATGSEDKTARLFDI 1895
V+GS D++ ++WD ++ C F GH + V + + + TGS D T ++ +
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 1896 RADQQI----------ATYLPPNKNSGFTSC---------AVSSSGRYIFCGSDDNNVHV 1936
+ + + P +N F VS G + GS DN + V
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 1937 WDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983
WD+ + +LSGH +R+ S +++S D +++W N
Sbjct: 295 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 135/327 (41%), Gaps = 53/327 (16%)
Query: 1681 KLMPKKS-LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL--RSAWV 1737
K +P+++ L+GH+ V + D+ + ++G+ D + ++D+ NK ++ L V
Sbjct: 109 KFVPQRTTLRGHMTSVITCLQFEDN-YVITGADDKMIRVYDS--INKKFLLQLSGHDGGV 165
Query: 1738 MSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-- 1795
++ +A G V+ G D V+D+ T +EG S+ R +D
Sbjct: 166 WALKYAHGGILVS-GSTDRTVRVWDIKKGCCTHV---------FEGHNSTVRCLDIVEYK 215
Query: 1796 ----LLTGSGDMKIVTWNLETGQRIHEVAQAH-------------------IGDVVSI-S 1831
++TGS D + W L + + + H G + S+ +
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275
Query: 1832 LSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTAR 1891
+S G V+GS D + +WD + KC+ GH + S + + S D T R
Sbjct: 276 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 335
Query: 1892 LFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH 1951
++D+ + + T G S +++ + D ++ WD ++ S H
Sbjct: 336 IWDLENGELMYTLQGHTALVGLLRL----SDKFLVSAAADGSIRGWD--ANDYSRKFSYH 389
Query: 1952 ENRVTSIS---LSPNGMALVTSSWDQF 1975
+++I+ +S N LV+ S +QF
Sbjct: 390 HTNLSAITTFYVSDN--ILVSGSENQF 414
>pdb|4J87|A Chain A, Crystal Structure Of Alpha-cop
pdb|4J8B|A Chain A, Crystal Structure Of Alpha-cop/emp47p Complex
pdb|4J8G|A Chain A, Crystal Structure Of Alpha-cop/e19 Complex
pdb|4J8G|B Chain B, Crystal Structure Of Alpha-cop/e19 Complex
Length = 327
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 2/155 (1%)
Query: 1829 SISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK 1888
++ P + +T + +LWD+R + F GH+ V + FHP+ F +G +D
Sbjct: 16 GVAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPIFVSGGDDY 75
Query: 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVL 1948
+++ ++ + + + C +I SDD + +W+ +L
Sbjct: 76 KVNVWNYKSRKLLFSLC--GHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRNCIAIL 133
Query: 1949 SGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983
+GH + V + P+ +V++S DQ V+VW S
Sbjct: 134 TGHSHYVMCAAFHPSEDLIVSASLDQTVRVWDISG 168
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 89/217 (41%), Gaps = 34/217 (15%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
++G D K+ WN ++ + + + H+ V + + + ++ S D++ ++W+++
Sbjct: 68 FVSGGDDYKVNVWNYKSRKLLFSLC-GHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQS 126
Query: 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDI--------------RADQQ- 1900
+ C+ GH V FHPS + S D+T R++DI + DQ+
Sbjct: 127 RNCIAILTGHSHYVMCAAFHPSEDLIVSASLDQTVRVWDISGLRMKNAAPVSMSKEDQKA 186
Query: 1901 ----------------IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL--KT 1942
I ++ + G CA + I DD V +W + K
Sbjct: 187 QAHNSISNDLFGSADAIVKFVLEGHDRGVNWCAFHPTLPLILSAGDDRLVKLWRMTASKA 246
Query: 1943 THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
GH N V+ P+ ++++S D+ ++VW
Sbjct: 247 WEVDTCRGHFNNVSCCLFHPHQELILSASEDKTIRVW 283
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/284 (19%), Positives = 102/284 (35%), Gaps = 41/284 (14%)
Query: 1713 DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772
+G++ +WD G V +AF + GG D V++ +R
Sbjct: 32 NGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPIFVSGGDDYKVNVWNYKSR------ 85
Query: 1773 KVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSIS 1831
K++ L G+ ++ C F + +L+ S D I WN ++ I + H V+ +
Sbjct: 86 KLLFSLCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRNCI-AILTGHSHYVMCAA 144
Query: 1832 LSPDGQYFVTGSVDKSCKLWD-------------------------------FREKKCVQ 1860
P V+ S+D++ ++WD F +
Sbjct: 145 FHPSEDLIVSASLDQTVRVWDISGLRMKNAAPVSMSKEDQKAQAHNSISNDLFGSADAIV 204
Query: 1861 TFF--GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAV 1918
F GH+ VN FHP+ + +D+ +L+ + A + + + C
Sbjct: 205 KFVLEGHDRGVNWCAFHPTLPLILSAGDDRLVKLWRMTASKAWEVDTCRGHFNNVSCCLF 264
Query: 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP 1962
I S+D + VWDL + T +R I++ P
Sbjct: 265 HPHQELILSASEDKTIRVWDLNRRTAVQTFRRANDRFWFITVHP 308
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 91/228 (39%), Gaps = 38/228 (16%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
+LT + +I W+ G + H G V I+ P FV+G D +W+++
Sbjct: 26 ILTSLHNGRIQLWDYRMGTLLDRF-DGHDGPVRGIAFHPTQPIFVSGGDDYKVNVWNYKS 84
Query: 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTS 1915
+K + + GH V FH + S+D+T R+++ ++ IA +S +
Sbjct: 85 RKLLFSLCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRNCIAIL---TGHSHYVM 141
Query: 1916 C-AVSSSGRYIFCGSDDNNVHVWDL----LKT--------------THNG---------- 1946
C A S I S D V VWD+ +K HN
Sbjct: 142 CAAFHPSEDLIVSASLDQTVRVWDISGLRMKNAAPVSMSKEDQKAQAHNSISNDLFGSAD 201
Query: 1947 -----VLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKV 1989
VL GH+ V + P ++++ D+ VK+W+ + + W+V
Sbjct: 202 AIVKFVLEGHDRGVNWCAFHPTLPLILSAGDDRLVKLWRMTASKAWEV 249
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 101/255 (39%), Gaps = 20/255 (7%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSG 1746
SL GH++ V + + +S S D + IW+ + N ++ S +VM AF S
Sbjct: 90 SLCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRNCIAILTGHSHYVMCAAFHPSE 149
Query: 1747 NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIV 1806
+ + +D V+D++ AA V + + D L GS D IV
Sbjct: 150 DLIVSASLDQTVRVWDISGLRMKNAAPVSMSKEDQKAQAHNSISND----LFGSAD-AIV 204
Query: 1807 TWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC--VQTFFG 1864
+ LE R V + P ++ D+ KLW K V T G
Sbjct: 205 KFVLEGHDR----------GVNWCAFHPTLPLILSAGDDRLVKLWRMTASKAWEVDTCRG 254
Query: 1865 HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924
H +V+ FHP + SEDKT R++D+ + T+ N F + +
Sbjct: 255 HFNNVSCCLFHPHQELILSASEDKTIRVWDLNRRTAVQTFRRANDRFWFITVHPKLN--- 311
Query: 1925 IFCGSDDNNVHVWDL 1939
+F + D+ V V+ L
Sbjct: 312 LFAAAHDSGVMVFKL 326
>pdb|4BH6|A Chain A, Insights Into Degron Recognition By Apc Coactivators From
The Structure Of An Acm1-cdh1 Complex
pdb|4BH6|B Chain B, Insights Into Degron Recognition By Apc Coactivators From
The Structure Of An Acm1-cdh1 Complex
pdb|4BH6|C Chain C, Insights Into Degron Recognition By Apc Coactivators From
The Structure Of An Acm1-cdh1 Complex
pdb|4BH6|D Chain D, Insights Into Degron Recognition By Apc Coactivators From
The Structure Of An Acm1-cdh1 Complex
pdb|4BH6|E Chain E, Insights Into Degron Recognition By Apc Coactivators From
The Structure Of An Acm1-cdh1 Complex
pdb|4BH6|F Chain F, Insights Into Degron Recognition By Apc Coactivators From
The Structure Of An Acm1-cdh1 Complex
pdb|4BH6|G Chain G, Insights Into Degron Recognition By Apc Coactivators From
The Structure Of An Acm1-cdh1 Complex
pdb|4BH6|H Chain H, Insights Into Degron Recognition By Apc Coactivators From
The Structure Of An Acm1-cdh1 Complex
Length = 308
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 113/255 (44%), Gaps = 31/255 (12%)
Query: 1739 SVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLT 1798
S+++ +G+ +A G + + +YD+ R K IR L G+ ++ C ++ L +
Sbjct: 67 SLSWIGAGSHLAVGQANGLVEIYDVMKR------KCIRTLSGHIDRVA-CLSWNNHVLTS 119
Query: 1799 GSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC 1858
GS D +I+ ++ E ++H +V + + +G D +++ K
Sbjct: 120 GSRDHRILHRDVRMPDPFFETIESHTQEVCGLKWNVADNKLASGGNDNVVHVYEGTSKSP 179
Query: 1859 VQTFFGHEADVNSVCFHPSG---LAFATGSEDKTARLF---------DIRADQQIATYL- 1905
+ TF H+A V ++ + P LA G+ D+ +++ DI + QI +
Sbjct: 180 ILTFDEHKAAVKAMAWSPHKRGVLATGGGTADRRLKIWNVNTSIKMSDIDSGSQICNMVW 239
Query: 1906 PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM 1965
N N TS S +Y N+ +WD +L GH RV ++LS +G
Sbjct: 240 SKNTNELVTSHGYS---KY--------NLTLWDCNSMDPIAILKGHSFRVLHLTLSNDGT 288
Query: 1966 ALVTSSWDQFVKVWQ 1980
+V+ + D+ ++ W+
Sbjct: 289 TVVSGAGDETLRYWK 303
Score = 33.9 bits (76), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 26/222 (11%)
Query: 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKT-QVIPLRSAWVMSVAFAQ 1744
++L GHI++V + S ++ SGS D +++ D + + I + V + +
Sbjct: 98 RTLSGHIDRVACL--SWNNHVLTSGSRDHRILHRDVRMPDPFFETIESHTQEVCGLKWNV 155
Query: 1745 SGNFVACGGMDNMCTVYD-------LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLL 1797
+ N +A GG DN+ VY+ L + A K + G L++
Sbjct: 156 ADNKLASGGNDNVVHVYEGTSKSPILTFDEHKAAVKAMAWSPHKRGVLATG--------- 206
Query: 1798 TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVT--GSVDKSCKLWDFRE 1855
G+ D ++ WN+ T ++ ++ + ++ S + VT G + LWD
Sbjct: 207 GGTADRRLKIWNVNTSIKMSDIDSG--SQICNMVWSKNTNELVTSHGYSKYNLTLWDCNS 264
Query: 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTAR---LFD 1894
+ GH V + G +G+ D+T R LFD
Sbjct: 265 MDPIAILKGHSFRVLHLTLSNDGTTVVSGAGDETLRYWKLFD 306
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%)
Query: 1777 ELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQ-RIHEVAQAHIGDVVSISLSP 1834
+ L + ++ SC+ + D TL+ G + W+L RI + ++++SP
Sbjct: 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 1835 DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894
D + + D + +WD + V+ F GH + + G TG D T R +D
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 1895 IRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR 1954
+R +Q+ + + S S +G ++ G + +NV V + K L HE+
Sbjct: 212 LREGRQLQQH---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESC 267
Query: 1955 VTSISLSPNGMALVTSSWDQFVKVWQ 1980
V S+ + G V++ D + W+
Sbjct: 268 VLSLKFAYCGKWFVSTGKDNLLNAWR 293
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 119/329 (36%), Gaps = 62/329 (18%)
Query: 1663 ADTKLEDVTASMPDAPKVKLMPKKSLK----GHINKVNSVHYSGDSRHCVSGSLDGKLII 1718
AD +++ V PDA +P+ + + H V +V S +RH +G G + +
Sbjct: 19 ADGQMQPVPFP-PDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKV 76
Query: 1719 WD-TWTGNKTQVIPL----RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAK 1773
WD + GNK+ V L R ++ S G + GG + +++DL AA
Sbjct: 77 WDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL-------AAP 129
Query: 1774 VIRELLGYEGFLSSCRFI----DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVS 1829
R +C + D + D I W+L + + Q H
Sbjct: 130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASC 188
Query: 1830 ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKT 1889
I +S DG TG +D + + WD RE + +Q + + S+ + P+G A G E
Sbjct: 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSN 247
Query: 1890 ARLFDIRADQQI--------------------------------------ATYLPPNKNS 1911
+ + + A+ ++S
Sbjct: 248 VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS 307
Query: 1912 GFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940
SC +S +YI GS D V++++
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATVYEVI 336
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 20/229 (8%)
Query: 1631 SSINIY-LKLQTAELKKELTQLIDKCKEEQAKQADTKL-----EDVTASMPDAPKVKLMP 1684
S+++I+ L T +K ELT C A D+K+ D ++ D L+
Sbjct: 119 STLSIWDLAAPTPRIKAELTSSAPACYA-LAISPDSKVCFSCCSDGNIAVWDLHNQTLV- 176
Query: 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQ 1744
+ +GH + + + S D +G LD + WD G + Q S + S+ +
Sbjct: 177 -RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ-IFSLGYCP 234
Query: 1745 SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG-DM 1803
+G ++A G + V +N D +L +E + S +F +G D
Sbjct: 235 TGEWLAVGMESSNVEVLHVNKPDK-------YQLHLHESCVLSLKFAYCGKWFVSTGKDN 287
Query: 1804 KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWD 1852
+ W G I + ++ V+S +S D +Y VTGS DK +++
Sbjct: 288 LLNAWRTPYGASIFQSKES--SSVLSCDISVDDKYIVTGSGDKKATVYE 334
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 1796 LLTGSGDMKIVTWNLE-TGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR 1854
L+ GS + W ++ +GQ I + Q H G V+ + S DG T S DK+ K+WD
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116
Query: 1855 EKKCVQTFFGHEADVNSVCF--HPSGLAFATGSEDKTARLFDIRA 1897
+ +Q H+A V ++ + P+ TGS DKT + +D R+
Sbjct: 117 SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISL--SPNGMALVTSSWDQFV 1976
S G +F S D +WDL + ++ H+ V +I +PN ++T SWD+ +
Sbjct: 95 SDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL 153
Query: 1977 KVWQESNTIVWKVLKV 1992
K W ++ VL++
Sbjct: 154 KFWDTRSSNPMMVLQL 169
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 98/212 (46%), Gaps = 25/212 (11%)
Query: 1782 EGFLSS-CRFIDDTTLLTGSGDMKI--VTWNLETGQRIHEVAQAHIGDVVSISLSPDGQY 1838
+GFL+S C + LL G D I V +G+ H G+V S+S DG
Sbjct: 59 QGFLNSVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSF-QDG-V 116
Query: 1839 FVTGSVDKSCKLWDFREKKCVQTFFGHEA---DVNSVCFHPSGLAFATGSEDKTARLFDI 1895
++GS DK+ K+W +E V H A D V F + F T S DKT +L+
Sbjct: 117 VISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSEN--KFLTASADKTIKLW-- 170
Query: 1896 RADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD----NNVHVWDLLKTTHNGVLSGH 1951
+ D+ I T+ + N AV G +I C +D + H D+L+T GH
Sbjct: 171 QNDKVIKTFSGIH-NDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRT-----YEGH 224
Query: 1952 ENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983
E+ V I L PNG +V+ D+ V++W + N
Sbjct: 225 ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKEN 255
Score = 37.4 bits (85), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 99/253 (39%), Gaps = 60/253 (23%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIW---DTWTGNKTQVIPLRSAWVMSVAFA 1743
+LKGH V V DS+ S S DG + +W D W G V+ ++ SV +
Sbjct: 13 TLKGHDQDVRDVVAVDDSK-VASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYD 68
Query: 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM 1803
+ GG D L +T + L+G++G + S F D +++GS D
Sbjct: 69 SEKELLLFGGKDTXINGVPLF---ATSGEDPLYTLIGHQGNVCSLSF-QDGVVISGSWDK 124
Query: 1804 KIVTWNLETGQRIHEVAQAH---IGDVVSISLSPDGQYFVTGSVDKSCKLW--------- 1851
W + G ++ + QAH + D +S S + F+T S DK+ KLW
Sbjct: 125 TAKVW--KEGSLVYNL-QAHNASVWDAKVVSFSEN--KFLTASADKTIKLWQNDKVIKTF 179
Query: 1852 -------------------------------DFREKKCVQTFFGHEADVNSVCFHPSGLA 1880
D ++T+ GHE+ V + P+G
Sbjct: 180 SGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDI 239
Query: 1881 FATGSEDKTARLF 1893
+ G ED+T R++
Sbjct: 240 VSCG-EDRTVRIW 251
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 1882 ATGSEDKTARLFDIRADQQIATYLPPNKNSGF-TSCAVSSSGRYIFCGSDDNNVHVWDLL 1940
A+ S D T RL+ + DQ + T + + GF S S + G D ++ L
Sbjct: 33 ASVSRDGTVRLWS-KDDQWLGTVVYTGQ--GFLNSVCYDSEKELLLFGGKDTXINGVPLF 89
Query: 1941 KTTHNG---VLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLE 1996
T+ L GH+ V S+S +++ SWD+ KVW+E + VYNL+
Sbjct: 90 ATSGEDPLYTLIGHQGNVCSLSFQDG--VVISGSWDKTAKVWKEGSL-------VYNLQ 139
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 1789 RFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSC 1848
RFI L T GD+K++ N QR E+ QAH+ ++ + P G+ ++ S D
Sbjct: 111 RFI----LGTTEGDIKVLDSNFNL-QR--EIDQAHVSEITKLKFFPSGEALISSSQDMQL 163
Query: 1849 KLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY-LPP 1907
K+W ++ +T GH A V + G + S D T RL++ I T+
Sbjct: 164 KIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 223
Query: 1908 NKNSGFTSCAVSSSGRYIFCGSD 1930
N + G S A +F G+D
Sbjct: 224 NPHDGVNSIA-------LFVGTD 239
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 1921 SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980
SG + S D + +W + ++ L GH VT I++ G ++++S D +++W+
Sbjct: 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 106/282 (37%), Gaps = 46/282 (16%)
Query: 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNF 1748
+ H++++ + + +S S D +L IW G+ + + A V +A G
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 1749 VACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGSGDMKIVT 1807
V +D +++ T R+ ++G S F+ D L S K
Sbjct: 196 VLSASLDGTIRLWECGT--GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK--- 250
Query: 1808 WNLETGQRIHEVAQAHIGDVVSI---------------------SLSPDG---QYFVTGS 1843
NLE G V H+ V+++ SL+ DG Y G
Sbjct: 251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY 310
Query: 1844 VDKSCKLWDFREKKC-VQTFFGHEAD-VNSVCFHPSGLAFATGSEDKTARLFDIRADQ-- 1899
+ WD R +C V F +E +N+V F +G F + D + +L DI +D
Sbjct: 311 ENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKL-DIISDPES 368
Query: 1900 -------QIATYLPPNKNSGFTSCAVS---SSGRYIFCGSDD 1931
+ T+L N ++ C VS S+G + G ++
Sbjct: 369 ERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN 410
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
R G+ + ++ V D + H + +T + P+G AL++SS D +K+W
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 166
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg
Particle Of The Proteasome
Length = 417
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 1789 RFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSC 1848
RFI L T GD+K++ N QR E+ QAH+ ++ + P G+ ++ S D
Sbjct: 108 RFI----LGTTEGDIKVLDSNFNL-QR--EIDQAHVSEITKLKFFPSGEALISSSQDMQL 160
Query: 1849 KLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY-LPP 1907
K+W ++ +T GH A V + G + S D T RL++ I T+
Sbjct: 161 KIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 220
Query: 1908 NKNSGFTSCAVSSSGRYIFCGSD 1930
N + G S A +F G+D
Sbjct: 221 NPHDGVNSIA-------LFVGTD 236
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 1921 SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980
SG + S D + +W + ++ L GH VT I++ G ++++S D +++W+
Sbjct: 147 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 90/239 (37%), Gaps = 34/239 (14%)
Query: 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNF 1748
+ H++++ + + +S S D +L IW G+ + + A V +A G
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 1749 VACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGSGDMKIVT 1807
V +D +++ T R+ ++G S F+ D L S K
Sbjct: 193 VLSASLDGTIRLWECGT--GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK--- 247
Query: 1808 WNLETGQRIHEVAQAHIGDVVSI---------------------SLSPDG---QYFVTGS 1843
NLE G V H+ V+++ SL+ DG Y G
Sbjct: 248 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY 307
Query: 1844 VDKSCKLWDFREKKC-VQTFFGHEAD-VNSVCFHPSGLAFATGSEDKTARLFDIRADQQ 1900
+ WD R +C V F +E +N+V F +G F + D + +L DI +D +
Sbjct: 308 ENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKL-DIISDPE 364
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
R G+ + ++ V D + H + +T + P+G AL++SS D +K+W
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 163
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i
Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor Eif3i
Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 20/215 (9%)
Query: 1777 ELLGYEGFLSSCRFIDDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD 1835
+L G+E L+ ++ + LL + S D W G+R+ + H G + SI +
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCF 85
Query: 1836 GQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED-----KTA 1890
+Y VTGS D S KLWD +CV T + V V F P G F ++ +
Sbjct: 86 TKYCVTGSADYSIKLWDVSNGQCVAT-WKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 1891 RLFDIRADQQI-----ATYLPPNK---NSGFTSCAV---SSSGRYIFCGSDDNNVHVWDL 1939
+++I D + P +K + G + V S+ G+YI G D + +D+
Sbjct: 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDV 204
Query: 1940 LKT-THNGVLSGHENRVTSISLSPNGMALVTSSWD 1973
+ + HE ++ + SP+ +TSS D
Sbjct: 205 SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 112/297 (37%), Gaps = 88/297 (29%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQ 1744
+L GH + S+ +++CV+GS D + +WD G T P+ V V F+
Sbjct: 69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVP---VKRVEFSP 125
Query: 1745 SGN-FVACGGMDNM------CTVYDLNNRDSTG------AAKVIRELLGYEGFLSSCRFI 1791
GN F+A +DN+ +Y++ RDS + + I +++ +EG L +
Sbjct: 126 CGNYFLAI--LDNVMKNPGSINIYEI-ERDSATHELTKVSEEPIHKIITHEG-LDAATVA 181
Query: 1792 DDTT----LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847
+T ++ G D KI +++ + H + + SPD YF+T S D +
Sbjct: 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN 241
Query: 1848 CKLWDF--------------------------------REKKCVQT-----------FF- 1863
L D +E K V T F+
Sbjct: 242 SFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301
Query: 1864 -----------GHEADVNSVCFHPSGLAFATGSEDKTARL-------FDIRADQQIA 1902
GH +N+V P G ++A+G ED RL FD + D + A
Sbjct: 302 KIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYDVEKA 358
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 62/331 (18%), Positives = 116/331 (35%), Gaps = 47/331 (14%)
Query: 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
M L GH + V Y+ + S S D +W + G + + + + S+
Sbjct: 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV 82
Query: 1743 AQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSC-----RFIDDTTLL 1797
+ G D ++D++N K + E S C +D+
Sbjct: 83 DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVE--FSPCGNYFLAILDNVMKN 140
Query: 1798 TGSGDMKIVTWNLETGQRIHEVAQA----------HIG-DVVSIS-LSPDGQYFVTGSVD 1845
GS I + +E HE+ + H G D +++ S G+Y + G D
Sbjct: 141 PGS----INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD 196
Query: 1846 KSCKLWDFREK-KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY 1904
+D + V + HE ++ + F P F T S D + L D+ Q + Y
Sbjct: 197 GKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY 256
Query: 1905 LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN-----------------GV 1947
+ + ++ +I G D+ T+ N G
Sbjct: 257 ---ETDCPLNTAVITPLKEFIILGGGQE---AKDVTTTSANEGKFEARFYHKIFEEEIGR 310
Query: 1948 LSGHENRVTSISLSPNGMALVTSSWDQFVKV 1978
+ GH + ++++SP G + + D F+++
Sbjct: 311 VQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972
T + G +F S D++ VW L G L GH + SI + VT S
Sbjct: 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA 94
Query: 1973 DQFVKVWQESN---TIVWK 1988
D +K+W SN WK
Sbjct: 95 DYSIKLWDVSNGQCVATWK 113
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 127/340 (37%), Gaps = 87/340 (25%)
Query: 1706 HCVSGSLDGKLIIWDTWTGNKTQV----IPLRSAWVMSVAF-AQSGNFVACG-GMDNMCT 1759
+C SG + G + IWD T T + IP+ S V +++ ++S A G G +
Sbjct: 73 YCASGDVHGNVRIWD--TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 130
Query: 1760 VY----DLNNRDSTGAAKVI-----------RELLG--------YEG------------- 1783
V+ +N + TG A+ + R + G +EG
Sbjct: 131 VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT 190
Query: 1784 -FLSSCRFIDDTTLLTGS-GDMKIVTWNLETGQRIHEVAQ------AHIGDVVSISLSPD 1835
F+ S R+ D +L + GD IV +N G + AH G V ++ SPD
Sbjct: 191 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD 250
Query: 1836 GQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK------- 1888
G + S DK+ K+W+ K +T + T ED+
Sbjct: 251 GTKIASASADKTIKIWNVATLKVEKT-----------------IPVGTRIEDQQLGIIWT 293
Query: 1889 TARLFDIRADQQIATYLPP---------NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939
L I A+ I P N T+ + S+ G+ +F + +++ WD+
Sbjct: 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353
Query: 1940 LKTTHNGVLSG-HENRVTSISLSPNGMALVTSSWDQFVKV 1978
N V H +T I + G L T SWD +KV
Sbjct: 354 STGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKV 392
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 79/368 (21%), Positives = 135/368 (36%), Gaps = 77/368 (20%)
Query: 1668 EDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKT 1727
+D T ++ + P K K + H V+SV Y+ D S DG +++++ G KT
Sbjct: 168 DDNTVAIFEGPPFKF--KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 225
Query: 1728 QVIP-------LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN----RDSTGAAKVIR 1776
V S V + ++ G +A D ++++ + ++
Sbjct: 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 285
Query: 1777 ELLGY------------EGFLS----------SCRF------------IDDTTLLTGSGD 1802
+ LG GF++ R+ D TL + +
Sbjct: 286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE 345
Query: 1803 MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF 1862
I +W++ TG H + I + G F WD K
Sbjct: 346 GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS--------WDDHLKVVPAGG 397
Query: 1863 FG---HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY-------LPPNKNSG 1912
G +A N + P GLA + + A + + IA Y +P + NS
Sbjct: 398 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY-----KHIAIYSHGKLTEVPISYNS- 451
Query: 1913 FTSC-AVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS-GHENRVTSISLSPNGMALVTS 1970
SC A+S+ +++ G D+ VHV+ L + + V + H +TS++ S NG LV +
Sbjct: 452 --SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT 509
Query: 1971 SWDQFVKV 1978
DQ KV
Sbjct: 510 --DQSRKV 515
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 1740 VAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTG 1799
VA + FVA GG D+ VY L +GA+ + + + ++S F ++ L
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKL-----SGASVSEVKTIVHPAEITSVAFSNNGAFLVA 508
Query: 1800 SG-DMKIVTWNLETGQRIHEVAQ--AHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
+ K++ +++ + H V +S SPD TGS+D S +W+ +
Sbjct: 509 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 83/223 (37%), Gaps = 64/223 (28%)
Query: 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQAH--IGDVV-------------------SISL 1832
TT+ SG +K ++W+ E+ +RI V + G V S+
Sbjct: 97 TTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF 155
Query: 1833 SPDGQY-FVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTAR 1891
P + ++GS D + +++ K TF H V+SV ++P G FA+ D T
Sbjct: 156 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 215
Query: 1892 LFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVW--DLLKTTHNGVLS 1949
L++ G D V+ D LK
Sbjct: 216 LYN---------------------------------GVDGTKTGVFEDDSLKNV------ 236
Query: 1950 GHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKV 1992
H V ++ SP+G + ++S D+ +K+W + V K + V
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 279
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 99/224 (44%), Gaps = 26/224 (11%)
Query: 1745 SGNFVACGGMDNMCTVYDLNNRDSTGA---AKVIRELLGYEGFLS--SCRFIDDTTLLTG 1799
SG+ ++ +C ++D+N G AK I G+ + + + ++ +
Sbjct: 192 SGHLLSASDDHTVC-LWDINAGPKEGKIVDAKAI--FTGHSAVVEDVAWHLLHESLFGSV 248
Query: 1800 SGDMKIVTWNLE--TGQRIHEVAQAHIGDVVSISLSPDGQYFV-TGSVDKSCKLWDFREK 1856
+ D K++ W+ T + + AH +V +S +P ++ + TGS DK+ LWD R
Sbjct: 249 ADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 1857 KC-VQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIR--ADQQIAT--------- 1903
K + TF H+ ++ V + P A+ D+ ++D+ ++Q A
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 1904 -YLPPNKNSGFTSCAVSSSGRYIFCG-SDDNNVHVWDLLKTTHN 1945
++ + + + + + ++ C S+DN + +W + + +N
Sbjct: 369 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYN 412
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 134/332 (40%), Gaps = 46/332 (13%)
Query: 1681 KLMPKKSLKGHINKV-NSVHYS--GDSRHCVSGSLDGKLIIWDTWTGNKT---------- 1727
K+ P GH + V +V +S S++ SG GK+I+W WT +K
Sbjct: 52 KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG-WTFDKESNSVEVNVKS 110
Query: 1728 --QVI--PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG 1783
QV+ P+ +S F V G DN ++ +S G E+ G+
Sbjct: 111 EFQVLAGPISD---ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLG------EVSGHSQ 161
Query: 1784 FLSSCRFIDDTTL--LTGSGDMKIVTWN-----LETGQRIHEVAQAHIGDVVSISLSPD- 1835
+++C + +T D +V + R H + + DV SPD
Sbjct: 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV---EFSPDS 218
Query: 1836 GQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL---AFATGSEDKTARL 1892
G++ +T D+ +D + + ++ + V F S L FAT D T R+
Sbjct: 219 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV 278
Query: 1893 FDIRADQQIATYLPPNKNSGFTSCAVSSSGR-YIFCGSDDNNVHVWDLLKTTHNGVLSGH 1951
+D+ + + + + G V ++G I S D ++ ++L +SGH
Sbjct: 279 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGH 338
Query: 1952 ENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983
+T+++++P L++ S+D + W S+
Sbjct: 339 NKGITALTVNP----LISGSYDGRIMEWSSSS 366
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 29/207 (14%)
Query: 1784 FLSSCRFIDDTT--LLTGSGDMKIVTWNLETGQ---RIHEVAQAHIGDVVSISLSPDGQY 1838
F+ F D+ ++T D KI ++ ++G+ I + + G + ++S D Q
Sbjct: 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQK 266
Query: 1839 FVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATG-------SEDKTAR 1891
F T D + ++WD KCVQ + D + G+ ATG S D T
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKW---TLDKQQLGNQQVGVV-ATGNGRIISLSLDGTLN 322
Query: 1892 LFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH 1951
+++ D+ + T NK G T+ V+ + GS D + W + + + H
Sbjct: 323 FYELGHDEVLKTISGHNK--GITALTVNP----LISGSYDGRIMEW-----SSSSMHQDH 371
Query: 1952 ENRVTSISLSPNGMALVTSSWDQFVKV 1978
N + S+ S + SWD +KV
Sbjct: 372 SNLIVSLDNS-KAQEYSSISWDDTLKV 397
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
Length = 435
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV-TGSVDKSCKLWDFR 1854
++TG ++ N++ G+ + + + H V ++L+P +F+ T SVD++ K+WD R
Sbjct: 224 VVTGDNVGNVILLNMD-GKELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
Query: 1855 EKKCVQTF---FGHEADVNSVCFHPSGLAFATGSEDKTARLF 1893
+ + +F H VN+ CF P G T + R++
Sbjct: 282 QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
Length = 436
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV-TGSVDKSCKLWDFR 1854
++TG ++ N++ G+ + + + H V ++L+P +F+ T SVD++ K+WD R
Sbjct: 224 VVTGDNVGNVILLNMD-GKELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
Query: 1855 EKKCVQTF---FGHEADVNSVCFHPSGLAFATGSEDKTARLF 1893
+ + +F H VN+ CF P G T + R++
Sbjct: 282 QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV-TGSVDKSCKLWDFR 1854
++TG ++ N++ G+ + + + H V ++L+P +F+ T SVD++ K+WD R
Sbjct: 225 VVTGDNVGNVILLNMD-GKELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 282
Query: 1855 EKKCVQTF---FGHEADVNSVCFHPSGLAFATGSEDKTARLF 1893
+ + +F H VN+ CF P G T + R++
Sbjct: 283 QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 324
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 18/179 (10%)
Query: 1818 EVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTFFG------------ 1864
+V + H G + ++ + P +G+Y ++G D L+D E Q+++
Sbjct: 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDL-ENSSRQSYYTCKAVCSIGRDHP 95
Query: 1865 --HEADVNSVCFHPSGLA-FATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSS 1921
H V +V ++P F + S DKT +++D Q + VS+
Sbjct: 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTK 155
Query: 1922 GRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPN-GMALVTSSWDQFVKVW 1979
+ G+ V + DL + + +L GH + ++S SP L T+S D VK+W
Sbjct: 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLW 214
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 105/310 (33%), Gaps = 80/310 (25%)
Query: 1746 GNFVACGGMDNMCTVYDLNN----------------RDSTGAAKVIRELLGY----EGFL 1785
G ++ GG D + +YDL N RD + E + + G
Sbjct: 56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115
Query: 1786 SSCRF------IDDTTLLT---------------------------GSGDMKIVTWNLET 1812
+S F D TL T G+ K+ +L++
Sbjct: 116 TSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175
Query: 1813 GQRIHEVAQAHIGDVVSISLSPDGQYFV-TGSVDKSCKLWDFREKK-CVQTF-------- 1862
G H + Q H +++++S SP Y + T S D KLWD R C+ T
Sbjct: 176 GSCSH-ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234
Query: 1863 -------FGHEADVNSVCFHPSGLAFATGSEDKTARLFD-IRADQQIATYLPPNKNS--- 1911
H VN +CF GL T D RL++ + + Y NS
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294
Query: 1912 -GFT-SCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVT 1969
FT SC SS ++ GS + V+ + +L GH V N L +
Sbjct: 295 LKFTVSCGCSSEFVFVPYGS---TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS 351
Query: 1970 SSWDQFVKVW 1979
S D + W
Sbjct: 352 GSRDCNILAW 361
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 1802 DMKIVTW---NLETGQRIHEVAQAHIGDVVSISLSPDGQYFV-TGSVDKSCKLWDFREKK 1857
D K++ W N T + H V AH +V +S +P ++ + TGS DK+ LWD R K
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 311
Query: 1858 C-VQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDI-----RADQQIATYLPP--- 1907
+ +F H+ ++ V + P A+ D+ ++D+ + A PP
Sbjct: 312 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 371
Query: 1908 ----NKNSGFTSCAVSSSGRYIFCG-SDDNNVHVWDLLKTTHN 1945
+ + + + + +I C S+DN + VW + + +N
Sbjct: 372 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN 414
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 1802 DMKIVTW---NLETGQRIHEVAQAHIGDVVSISLSPDGQYFV-TGSVDKSCKLWDFREKK 1857
D K++ W N T + H V AH +V +S +P ++ + TGS DK+ LWD R K
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 313
Query: 1858 C-VQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDI-----RADQQIATYLPP--- 1907
+ +F H+ ++ V + P A+ D+ ++D+ + A PP
Sbjct: 314 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 373
Query: 1908 ----NKNSGFTSCAVSSSGRYIFCG-SDDNNVHVWDLLKTTHN 1945
+ + + + + +I C S+DN + VW + + +N
Sbjct: 374 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN 416
>pdb|4J0X|A Chain A, Structure Of Rrp9
pdb|4J0X|B Chain B, Structure Of Rrp9
Length = 451
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 1666 KLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN 1725
KL+ P K + + +GH +++ +V S D ++ V+G D KLI+W T + +
Sbjct: 88 KLKYAKGGAKYIPTSKHEYENTTEGHYDEILTVAASPDGKYVVTGGRDRKLIVWSTESLS 147
Query: 1726 KTQVIPL--RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765
+VIP R V+S+AF ++ + + D Y +N
Sbjct: 148 PVKVIPTKDRRGEVLSLAFRKNSDQLYASCADFKIRTYSINQ 189
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 1821 QAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851
+ H ++++++ SPDG+Y VTG D+ +W
Sbjct: 111 EGHYDEILTVAASPDGKYVVTGGRDRKLIVW 141
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/271 (18%), Positives = 92/271 (33%), Gaps = 67/271 (24%)
Query: 1781 YEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV-AQAHIGDVVSISLSPDGQYF 1839
Y+ L+ D ++TG D K++ W+ E+ + + + G+V+S++ +
Sbjct: 114 YDEILTVAASPDGKYVVTGGRDRKLIVWSTESLSPVKVIPTKDRRGEVLSLAFRKNSDQL 173
Query: 1840 VTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ 1899
D + + + ++ +GH V + G+ D+TA L+ I D+
Sbjct: 174 YASCADFKIRTYSINQFSQLEILYGHHDIVEDISALAMERCVTVGARDRTAMLWKI-PDE 232
Query: 1900 QIATYL---PPNK-------------NSGFTSCAVSSSGRYIFC---------------- 1927
T+ P K G S FC
Sbjct: 233 TRLTFRGGDEPQKLLRRWMKENAKEGEDGEVKYPDESEAPLFFCEGSIDVVSMVDDFHFI 292
Query: 1928 -GSDDNNVHVWDLLKT-------THNGVL--------SGHENR----------------- 1954
GSD+ N+ +W L K +G+L SG +
Sbjct: 293 TGSDNGNICLWSLAKKKPIFTERIAHGILPEPSFNDISGETDEELRKRQLQGKKLLQPFW 352
Query: 1955 VTSISLSPNGMALVTSSWDQFVKVWQESNTI 1985
+TS+ P ++ SW +KVW+ S+ +
Sbjct: 353 ITSLYAIPYSNVFISGSWSGSLKVWKISDNL 383
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 118/293 (40%), Gaps = 61/293 (20%)
Query: 1673 SMPDAPKVKLMPKKSLKGHINKVNSVHYSGD-SRHCVSGSLDGKLIIWDTWTGNKTQVIP 1731
S PD P + P L+GH + + ++ + S H +S S D + +WD
Sbjct: 159 SKPD-PSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDI---------- 207
Query: 1732 LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791
A + G V + T++ TG V+ ++ S +
Sbjct: 208 --------SAVPKEGKVV------DAKTIF-------TGHTAVVEDV--------SWHLL 238
Query: 1792 DDTTLLTGSGDMKIVTWNLE---TGQRIHEVAQAHIGDVVSISLSPDGQYFV-TGSVDKS 1847
++ + + D K++ W+ T + H V AH +V +S +P ++ + TGS DK+
Sbjct: 239 HESLFGSVADDQKLMIWDTRSNNTSKPSHSV-DAHTAEVNCLSFNPYSEFILATGSADKT 297
Query: 1848 CKLWDFREKKC-VQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDI-----RADQQ 1900
LWD R K + +F H+ ++ V + P A+ D+ ++D+ +
Sbjct: 298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357
Query: 1901 IATYLPP-------NKNSGFTSCAVSSSGRYIFCG-SDDNNVHVWDLLKTTHN 1945
A PP + + + + + ++ C S+DN + VW + + +N
Sbjct: 358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYN 410
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 1802 DMKIVTW---NLETGQRIHEVAQAHIGDVVSISLSPDGQYFV-TGSVDKSCKLWDFREKK 1857
D K++ W N T + H V AH +V +S +P ++ + TGS DK+ LWD R K
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 315
Query: 1858 C-VQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDI-----RADQQIATYLPP--- 1907
+ +F H+ ++ V + P A+ D+ ++D+ + A PP
Sbjct: 316 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 375
Query: 1908 ----NKNSGFTSCAVSSSGRYIFCG-SDDNNVHVWDLLKTTHN 1945
+ + + + + +I C S+DN + VW + + +N
Sbjct: 376 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN 418
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 13/161 (8%)
Query: 1745 SGNFVACGGMDNMCTVYDLNNRDSTGA---AKVIRELLGYEGFLS--SCRFIDDTTLLTG 1799
SG+ ++ +C ++D+N G AK I G+ + + + ++ +
Sbjct: 192 SGHLLSASDDHTVC-LWDINAGPKEGKIVDAKAI--FTGHSAVVEDVAWHLLHESLFGSV 248
Query: 1800 SGDMKIVTWNLE--TGQRIHEVAQAHIGDVVSISLSPDGQYFV-TGSVDKSCKLWDFREK 1856
+ D K+ W+ T + + AH +V +S +P ++ + TGS DK+ LWD R
Sbjct: 249 ADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 1857 KC-VQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDI 1895
K + TF H+ ++ V + P A+ D+ ++D+
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 19/201 (9%)
Query: 1782 EGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQR--IHEVAQAHIGDVVS-ISLSPDGQY 1838
E ++ ++ + +L S + W L+ + + + + D+VS +S+ G
Sbjct: 82 EAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ 141
Query: 1839 FVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRA 1897
V+GS D K+WD ++ + ++ H A V V P F + SED L+D R
Sbjct: 142 AVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC 201
Query: 1898 DQ---QIAT----YLPPNKNSGFTSCAVSSSGRYIFCGSDDNN-VHVWDLLKTTHNGVLS 1949
+ QI YLP TS A +F D+N V + D T+ +
Sbjct: 202 PKPASQIGCSAPGYLP-------TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA 254
Query: 1950 GHENRVTSISLSPNGMALVTS 1970
H VT + SP+ + + S
Sbjct: 255 VHSQCVTGLVFSPHSVPFLAS 275
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 1910 NSGFTSCAVSSSG----------RYIFCGSDDNNVHVWDLLKTTHNGVLSG-----HENR 1954
N GF S V + R I SD V +W+L ++S H++
Sbjct: 71 NEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWEL-DENETLIVSKFCKYEHDDI 129
Query: 1955 VTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
V+++S+ +G V+ S D +KVW + + VL Y + CV
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQV---VLSSYRAHAAQVTCV 175
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 132/332 (39%), Gaps = 54/332 (16%)
Query: 1681 KLMPKKSLKGHINKV-NSVHYS--GDSRHCVSGSLDGKLIIWDTWTGNKT---------- 1727
K+ P GH + V +V +S S++ SG GK+I+W WT +K
Sbjct: 52 KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG-WTFDKESNSVEVNVKS 110
Query: 1728 --QVI--PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG 1783
QV+ P+ +S F V G DN ++ +S G E+ G+
Sbjct: 111 EFQVLAGPISD---ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLG------EVSGHSQ 161
Query: 1784 FLSSCRFI-----------DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832
+++C DD +++ G + R H + + DV
Sbjct: 162 RINACHLKQSRPXRSXTVGDDGSVVFYQGP----PFKFSASDRTHHKQGSFVRDV---EF 214
Query: 1833 SPD-GQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL---AFATGSEDK 1888
SPD G++ +T D+ +D + + ++ + V F S L FAT D
Sbjct: 215 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA 274
Query: 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR-YIFCGSDDNNVHVWDLLKTTHNGV 1947
T R++D+ + + + + G V ++G I S D ++ ++L
Sbjct: 275 TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKT 334
Query: 1948 LSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
+SGH +T+++++P L++ S+D + W
Sbjct: 335 ISGHNKGITALTVNP----LISGSYDGRIXEW 362
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 29/207 (14%)
Query: 1784 FLSSCRFIDDTT--LLTGSGDMKIVTWNLETGQ---RIHEVAQAHIGDVVSISLSPDGQY 1838
F+ F D+ ++T D KI ++ ++G+ I + + G + ++S D Q
Sbjct: 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQK 266
Query: 1839 FVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATG-------SEDKTAR 1891
F T D + ++WD KCVQ + D + G+ ATG S D T
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKW---TLDKQQLGNQQVGVV-ATGNGRIISLSLDGTLN 322
Query: 1892 LFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH 1951
+++ D+ + T NK G T+ V+ + GS D + W + H
Sbjct: 323 FYELGHDEVLKTISGHNK--GITALTVNP----LISGSYDGRIXEWSSSSXHQD-----H 371
Query: 1952 ENRVTSISLSPNGMALVTSSWDQFVKV 1978
N + S+ S + SWD +KV
Sbjct: 372 SNLIVSLDNS-KAQEYSSISWDDTLKV 397
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From
Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes From
Xenopus Laevis
Length = 357
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 1782 EGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQR--IHEVAQAHIGDVV-SISLSPDGQY 1838
E ++ ++ + +L S + W + + +++ A+ D+V ++S+ DG
Sbjct: 94 EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ 153
Query: 1839 FVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPS-GLAFATGSEDKTARLFDIR 1896
V+G D S K+WD +K ++++ H ++VN V P F + ED L+D R
Sbjct: 154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 1921 SGRYIFCGSDDNNVHVWDLLKT----THNGVLSGHENRVTSISLSPNGMALVTSSWDQFV 1976
S + I SD V +W++L+ + H++ V ++S+ +G V+ D V
Sbjct: 104 SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSV 163
Query: 1977 KVWQESNTIVWKVLKVYNLEKKTIFCV 2003
KVW S VLK YN + CV
Sbjct: 164 KVWDLSQK---AVLKSYNAHSSEVNCV 187
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 106/262 (40%), Gaps = 22/262 (8%)
Query: 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACG 1752
N+V + +S D V+G +G+L +W+ TG V+ A ++SV + + G +
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWNK-TGALLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 1753 GMDNMCTVYDLNNR--------DSTGAAKVIRELLGYEGFLS-SCRFIDDTTLLTGSGDM 1803
++N+ ++++ + TG + + E +G L ++DD +
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG 227
Query: 1804 KIVTWNLE----TGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCV 1859
I + + TG+ I H G + + + + ++ S D + ++W
Sbjct: 228 AIFVYQITEKTPTGKLI-----GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ 282
Query: 1860 QTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVS 1919
F+GH + S + + S D + RL+ ++ + +A L + +S
Sbjct: 283 NCFYGHSQSIVSASWVGDDKVISC-SMDGSVRLWSLKQNTLLA--LSIVDGVPIFAGRIS 339
Query: 1920 SSGRYIFCGSDDNNVHVWDLLK 1941
G+ D V+V+DL K
Sbjct: 340 QDGQKYAVAFMDGQVNVYDLKK 361
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 34.3 bits (77), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 1785 LSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ--AHIGDVVS---ISLSPDGQYF 1839
L + F+ +LT + ++ W+ Q+ +E +Q + GD V + P+ Q+
Sbjct: 194 LHAVTFLRTPEILTVNSIGQLKIWDFR--QQGNEPSQILSLTGDRVPLHCVDRHPNQQHV 251
Query: 1840 V-TGSVDKSCKLWDFREKKC-VQTFFGHEADVNSVCFHPSGLA-FATGSEDKTARLFDIR 1896
V TG D +WD R+ V HEA++ V FHPS T SED + +D
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAS 311
Query: 1897 AD--QQIATYLPPNKNSGFTSCAVSS 1920
D ++ + + ++S F S ++S+
Sbjct: 312 TDVPEKSSLFHQGGRSSTFLSHSISN 337
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 1817 HEV--AQAHIGDVVSISLSPDGQYFV-TGSVDKSCKLWDFREKKCVQTFFG---HEADVN 1870
HE+ + H V +P + + T SVD + KLWD R K ++ HE VN
Sbjct: 194 HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVN 253
Query: 1871 SVCFHPS 1877
+ F+P+
Sbjct: 254 AAYFNPT 260
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 1922 GRYIFCGSDDNNVHVWDLLKTTHNGVLS----GHENRVTSISL-SPN-GMALVTSSWDQF 1975
GR++ S D ++ V+ L K T N LS H++ + +I SP G + ++S+D+
Sbjct: 21 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 80
Query: 1976 VKVWQE 1981
VK+W+E
Sbjct: 81 VKLWEE 86
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 48/206 (23%)
Query: 1798 TGSGDMKIVTWNLE---TGQRIHEVAQAHIGDVVSISL-SPD-GQYFVTGSVDKSCKLW- 1851
T S D I + L+ + + + +AH +V+I SP+ G+ + S DK+ KLW
Sbjct: 26 TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 85
Query: 1852 -DFREKKC-------VQTFFGHEADVNSVCFHPS--GLAFATGSEDKTARLFDIRADQQI 1901
D +++C + T + + SV F P+ GL A D RL+D +
Sbjct: 86 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 145
Query: 1902 ATY----------LPPNKNSGFTSCAVSSSGRY--------------IFCGSDDNNVHVW 1937
++ +PP + C R+ I+ D +HV
Sbjct: 146 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV- 204
Query: 1938 DLLKTTHNGVLSGHENRVTSISLSPN 1963
L GH++ + SIS +P+
Sbjct: 205 -------AAKLPGHKSLIRSISWAPS 223
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct
Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 1817 HEV--AQAHIGDVVSISLSPDGQYFV-TGSVDKSCKLWDFREKKCVQTFFG---HEADVN 1870
HE+ + H V +P + + T SVD + KLWD R K ++ HE VN
Sbjct: 195 HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVN 254
Query: 1871 SVCFHPS 1877
+ F+P+
Sbjct: 255 AAYFNPT 261
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space
Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space
Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space
Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space
Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space
Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space
Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space
Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space
Group P212121
Length = 351
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 1922 GRYIFCGSDDNNVHVWDLLKTTHNGVLS----GHENRVTSISL-SPN-GMALVTSSWDQF 1975
GR++ S D ++ V+ L K T N LS H++ + +I SP G + ++S+D+
Sbjct: 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82
Query: 1976 VKVWQE 1981
VK+W+E
Sbjct: 83 VKLWEE 88
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 48/206 (23%)
Query: 1798 TGSGDMKIVTWNLE---TGQRIHEVAQAHIGDVVSISL-SPD-GQYFVTGSVDKSCKLW- 1851
T S D I + L+ + + + +AH +V+I SP+ G+ + S DK+ KLW
Sbjct: 28 TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
Query: 1852 -DFREKKC-------VQTFFGHEADVNSVCFHPS--GLAFATGSEDKTARLFDIRADQQI 1901
D +++C + T + + SV F P+ GL A D RL+D +
Sbjct: 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 147
Query: 1902 ATY----------LPPNKNSGFTSCAVSSSGRY--------------IFCGSDDNNVHVW 1937
++ +PP + C R+ I+ D +HV
Sbjct: 148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV- 206
Query: 1938 DLLKTTHNGVLSGHENRVTSISLSPN 1963
L GH++ + SIS +P+
Sbjct: 207 -------AAKLPGHKSLIRSISWAPS 225
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space
Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space
Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space
Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space
Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space
Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space
Group P21212
Length = 351
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 1922 GRYIFCGSDDNNVHVWDLLKTTHNGVLS----GHENRVTSISL-SPN-GMALVTSSWDQF 1975
GR++ S D ++ V+ L K T N LS H++ + +I SP G + ++S+D+
Sbjct: 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82
Query: 1976 VKVWQE 1981
VK+W+E
Sbjct: 83 VKLWEE 88
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 48/206 (23%)
Query: 1798 TGSGDMKIVTWNLE---TGQRIHEVAQAHIGDVVSISL-SPD-GQYFVTGSVDKSCKLW- 1851
T S D I + L+ + + + +AH +V+I SP+ G+ + S DK+ KLW
Sbjct: 28 TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
Query: 1852 -DFREKKC-------VQTFFGHEADVNSVCFHPS--GLAFATGSEDKTARLFDIRADQQI 1901
D +++C + T + + SV F P+ GL A D RL+D +
Sbjct: 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 147
Query: 1902 ATY----------LPPNKNSGFTSCAVSSSGRY--------------IFCGSDDNNVHVW 1937
++ +PP + C R+ I+ D +HV
Sbjct: 148 RSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV- 206
Query: 1938 DLLKTTHNGVLSGHENRVTSISLSPN 1963
L GH++ + SIS +P+
Sbjct: 207 -------AAKLPGHKSLIRSISWAPS 225
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 12/159 (7%)
Query: 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEVA------QAHIGDVVSISLSPDGQ-YFVTGSV 1844
+D + +GS D ++ W + G + + + H V ++ P Q ++
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGX 152
Query: 1845 DKSCKLWDFREKKCVQTFFG--HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIA 1902
D +WD V T H + SV + G T DK R+ + R +A
Sbjct: 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212
Query: 1903 TYLPPNKNSGFTSCAVSSSGRYI---FCGSDDNNVHVWD 1938
P++ + S G+ + F + V +WD
Sbjct: 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD 251
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 1689 KGHINKVNSVHYSGDSRHCV-SGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFA-QSG 1746
+GH + S+ + H + S D +++W+ + + P R W FA ++
Sbjct: 259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAP 318
Query: 1747 NFVACGGMDNMCTVYDLNNRDST 1769
+ AC DN V L N +T
Sbjct: 319 DLFACASFDNKIEVQTLQNLTNT 341
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 1794 TTLLTGSGDMKIVTWNLETGQRIHEV-AQAHIGDVVSISLSPD--GQYFVTGSVDKSCKL 1850
T L T S D + +++ G +I + H G V ++ + G + S D+ +
Sbjct: 26 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85
Query: 1851 WDFREKKCV----QTFFGHEADVNSVCFHPS--GLAFATGSEDKTARLFDIRADQQ 1900
W RE+ GH++ VNSVC+ P GL A GS D L + Q
Sbjct: 86 W--REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ 139
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 12/159 (7%)
Query: 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEVA------QAHIGDVVSISLSPDGQ-YFVTGSV 1844
+D + +GS D ++ W + G + + + H V ++ P Q ++
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152
Query: 1845 DKSCKLWDFREKKCVQTFFG--HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIA 1902
D +WD V T H + SV + G T DK R+ + R +A
Sbjct: 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212
Query: 1903 TYLPPNKNSGFTSCAVSSSGRYI---FCGSDDNNVHVWD 1938
P++ + S G+ + F + V +WD
Sbjct: 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD 251
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 1774 VIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRI 1816
V + L G++ F+SS D LL+ GD KI W+ +TG+ +
Sbjct: 233 VDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNL 275
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 73/164 (44%), Gaps = 11/164 (6%)
Query: 1749 VACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGS--GDMKI 1805
+AC D V+D++ + S K +R+ + ++ DDTT++ GD+
Sbjct: 118 IACADSDKSLLVFDVD-KTSKNVLK-LRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS 175
Query: 1806 VTWN-LETGQRIHEVAQAHIGDVVSISLSPDG---QYFVTGSVDKSCKLWDFREKKCVQT 1861
+ N + + E H+ + + L D Q+ +T D+ K+ + + V
Sbjct: 176 IDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK 235
Query: 1862 F-FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY 1904
+ FGH+ V+S+C L + G +DK +D + + ++T+
Sbjct: 236 WLFGHKHFVSSICCGKDYLLLSAGGDDKIFA-WDWKTGKNLSTF 278
>pdb|2AOT|B Chain B, Histamine Methyltransferase Complexed With The
Antihistamine Drug Diphenhydramine
Length = 292
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 320 KILTRVQPTIP----EPEIIEDVANSVSKDANSVAKDANSVIAHWLWDHLGNPTFQVRCV 375
+IL++VQ P E++E A ++K VAK +N + W + +Q R +
Sbjct: 69 QILSKVQAQYPGVXINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRML 128
Query: 376 E--------LLHQLQSVLYSSDV 390
E +H +Q + Y D+
Sbjct: 129 EKKELQKWDFIHMIQMLYYVKDI 151
>pdb|2AOT|A Chain A, Histamine Methyltransferase Complexed With The
Antihistamine Drug Diphenhydramine
pdb|2AOU|A Chain A, Histamine Methyltransferase Complexed With The
Antimalarial Drug Amodiaquine
Length = 292
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 320 KILTRVQPTIP----EPEIIEDVANSVSKDANSVAKDANSVIAHWLWDHLGNPTFQVRCV 375
+IL++VQ P E++E A ++K VAK +N + W + +Q R +
Sbjct: 69 QILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRML 128
Query: 376 E--------LLHQLQSVLYSSDV 390
E +H +Q + Y D+
Sbjct: 129 EKKELQKWDFIHMIQMLYYVKDI 151
>pdb|1JQD|A Chain A, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Thr105 Polymorphic Variant) Complexed
With Adohcy And Histamine
pdb|1JQD|B Chain B, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Thr105 Polymorphic Variant) Complexed
With Adohcy And Histamine
pdb|2AOV|A Chain A, Histamine Methyltransferase Complexed With The Antifolate
Drug Metoprine
pdb|2AOV|B Chain B, Histamine Methyltransferase Complexed With The Antifolate
Drug Metoprine
pdb|2AOX|A Chain A, Histamine Methyltransferase (Primary Variant T105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
pdb|2AOX|B Chain B, Histamine Methyltransferase (Primary Variant T105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
Length = 292
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 320 KILTRVQPTIP----EPEIIEDVANSVSKDANSVAKDANSVIAHWLWDHLGNPTFQVRCV 375
+IL++VQ P E++E A ++K VAK +N + W + +Q R +
Sbjct: 69 QILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRML 128
Query: 376 E--------LLHQLQSVLYSSDV 390
E +H +Q + Y D+
Sbjct: 129 EKKELQKWDFIHMIQMLYYVKDI 151
>pdb|2AOU|B Chain B, Histamine Methyltransferase Complexed With The
Antimalarial Drug Amodiaquine
Length = 292
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 320 KILTRVQPTIP----EPEIIEDVANSVSKDANSVAKDANSVIAHWLWDHLGNPTFQVRCV 375
+IL++VQ P E++E A ++K VAK +N + W + +Q R +
Sbjct: 69 QILSKVQAQYPGVXINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRML 128
Query: 376 E--------LLHQLQSVLYSSDV 390
E +H +Q + Y D+
Sbjct: 129 EKKELQKWDFIHMIQMLYYVKDI 151
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 72/193 (37%), Gaps = 34/193 (17%)
Query: 1687 SLKGHINKVNSVHYSGDSRHCV--SGSLDGKLIIWDTWTGNKTQVI--PLRSAWVMSVAF 1742
+L GH V V ++ + S S DGK++IW G +Q+ + SA V SV +
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 1743 A--QSGNFVACGGMDNMCTVYDLNNRDSTG----------------AAKVIRELLGYEGF 1784
A + G + D +V + +T A I E + G
Sbjct: 108 APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 167
Query: 1785 LSSCRFIDDTTLLTGSGDMKIVTWNLETGQR---IHEVAQAHIGDVVSISLSPD---GQY 1838
S +F+ TG D + W + + + + H V ++ SP Y
Sbjct: 168 KESRKFV------TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 1839 FVTGSVDKSCKLW 1851
+ S D++C +W
Sbjct: 222 LASVSQDRTCIIW 234
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 65/168 (38%), Gaps = 28/168 (16%)
Query: 1796 LLTGSGDMKI-VTWNLETGQRIHEVAQAHIGDVVSISLSP-----DGQY--------FVT 1841
LL S D K+ V E G + AH V S S +P DG++ FVT
Sbjct: 116 LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175
Query: 1842 GSVDKSCKLWDFREKKCVQTFF------GHEADVNSVCFHPSGLA---FATGSEDKTARL 1892
G D K+W + QT+ GH V V + P+ L A+ S+D+T +
Sbjct: 176 GGADNLVKIWKYNSD--AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 233
Query: 1893 FDIRADQ--QIATYLPPNKNSG-FTSCAVSSSGRYIFCGSDDNNVHVW 1937
+ +Q T L K + S SG + DN V +W
Sbjct: 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2ZXQ|A Chain A, Crystal Structure Of Endo-Alpha-N-Acetylgalactosaminidase
From Bifidobacterium Longum (Engbf)
Length = 1376
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 1883 TGSEDKTARLFDIRADQQIATYLP-PNKNSGFTSCAVSSSGRYIFCGS 1929
TG D + RL D++A Q+ A Y+ N+++G S V+S G+ + S
Sbjct: 823 TGKVDVSQRLTDLKAGQKYALYVGVDNRSTGDASVTVTSGGKVLATNS 870
Database: pdbaa
Posted date: Jul 29, 2013 4:35 PM
Number of letters in database: 15,674,573
Number of sequences in database: 65,211
Lambda K H
0.316 0.130 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,211,615
Number of Sequences: 65211
Number of extensions: 1988424
Number of successful extensions: 5900
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 4487
Number of HSP's gapped (non-prelim): 477
length of query: 2004
length of database: 15,674,573
effective HSP length: 114
effective length of query: 1890
effective length of database: 8,240,519
effective search space: 15574580910
effective search space used: 15574580910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)