Query psy8748
Match_columns 2004
No_of_seqs 1219 out of 3099
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 18:15:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 2.5E-40 8.6E-45 394.9 50.7 301 1677-1980 40-340 (340)
2 1nr0_A Actin interacting prote 100.0 3.1E-40 1E-44 426.0 48.9 395 1552-2003 56-587 (611)
3 2pbi_B Guanine nucleotide-bind 100.0 1E-38 3.4E-43 384.5 48.9 337 1643-1980 15-354 (354)
4 1nr0_A Actin interacting prote 100.0 5.1E-38 1.8E-42 405.3 47.0 335 1551-1982 143-610 (611)
5 1r5m_A SIR4-interacting protei 100.0 6.7E-38 2.3E-42 375.8 44.5 285 1688-1983 104-425 (425)
6 2ymu_A WD-40 repeat protein; u 100.0 1.9E-37 6.5E-42 391.5 48.7 359 1552-1980 218-577 (577)
7 1vyh_C Platelet-activating fac 100.0 5.4E-38 1.8E-42 385.5 42.4 290 1684-1982 100-410 (410)
8 3iz6_a 40S ribosomal protein R 100.0 3.4E-38 1.2E-42 382.6 37.9 305 1681-1985 55-377 (380)
9 2ymu_A WD-40 repeat protein; u 100.0 7.1E-37 2.4E-41 386.4 50.8 371 1553-2003 178-555 (577)
10 3ow8_A WD repeat-containing pr 100.0 1.8E-36 6.3E-41 360.3 44.8 289 1685-1982 25-320 (321)
11 2ynn_A Coatomer subunit beta'; 100.0 3.8E-36 1.3E-40 353.4 43.5 294 1682-1984 3-303 (304)
12 1vyh_C Platelet-activating fac 100.0 3.5E-36 1.2E-40 369.4 42.3 286 1551-1940 104-410 (410)
13 4ery_A WD repeat-containing pr 100.0 3.8E-35 1.3E-39 343.1 45.5 294 1682-1982 13-311 (312)
14 1pgu_A Actin interacting prote 100.0 4.6E-35 1.6E-39 370.4 48.5 399 1551-2003 59-590 (615)
15 3ow8_A WD repeat-containing pr 100.0 3E-35 1E-39 349.9 42.0 286 1552-1939 29-319 (321)
16 2ynn_A Coatomer subunit beta'; 100.0 7.6E-35 2.6E-39 342.3 44.7 287 1552-1941 10-302 (304)
17 4aow_A Guanine nucleotide-bind 100.0 1.5E-34 5E-39 338.2 45.3 293 1683-1985 29-339 (340)
18 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.8E-35 1.7E-39 350.4 41.7 299 1683-1986 6-338 (345)
19 1gxr_A ESG1, transducin-like e 100.0 7.4E-35 2.5E-39 339.0 42.0 282 1689-1981 48-335 (337)
20 3frx_A Guanine nucleotide-bind 100.0 1.2E-34 4.2E-39 343.2 42.6 291 1682-1984 7-318 (319)
21 2pm9_A Protein WEB1, protein t 100.0 2.3E-36 7.9E-41 364.1 26.5 293 1690-1984 65-415 (416)
22 1got_B GT-beta; complex (GTP-b 100.0 3.5E-34 1.2E-38 341.9 44.7 282 1552-1938 52-340 (340)
23 3frx_A Guanine nucleotide-bind 100.0 2.5E-34 8.6E-39 340.6 41.9 292 1551-1942 13-318 (319)
24 2hes_X YDR267CP; beta-propelle 100.0 5.7E-34 1.9E-38 339.1 42.7 297 1683-1983 5-328 (330)
25 2xzm_R RACK1; ribosome, transl 100.0 4.2E-34 1.4E-38 341.2 41.3 292 1681-1984 10-341 (343)
26 1erj_A Transcriptional repress 100.0 5.9E-34 2E-38 347.0 43.2 284 1690-1984 62-390 (393)
27 4g56_B MGC81050 protein; prote 100.0 1.1E-34 3.6E-39 350.2 36.2 246 1688-1943 90-345 (357)
28 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-34 5.6E-39 399.0 42.9 390 1550-2002 610-1049(1249)
29 3zwl_B Eukaryotic translation 100.0 1.9E-33 6.4E-38 330.7 45.5 294 1682-1985 22-348 (369)
30 2oaj_A Protein SNI1; WD40 repe 100.0 3.1E-34 1.1E-38 387.2 44.2 350 1552-2003 14-628 (902)
31 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.3E-34 2.8E-38 339.7 43.0 301 1553-1948 13-342 (345)
32 1pgu_A Actin interacting prote 100.0 1.3E-33 4.3E-38 357.2 46.8 326 1552-1983 157-614 (615)
33 4gqb_B Methylosome protein 50; 100.0 3.4E-34 1.1E-38 345.6 38.8 245 1689-1943 79-333 (344)
34 2pbi_B Guanine nucleotide-bind 100.0 1.4E-33 4.6E-38 339.8 44.0 283 1552-1938 61-354 (354)
35 3vl1_A 26S proteasome regulato 100.0 8.4E-34 2.9E-38 343.4 39.7 283 1693-1983 98-419 (420)
36 2xzm_R RACK1; ribosome, transl 100.0 8.6E-34 2.9E-38 338.5 39.0 296 1551-1942 17-341 (343)
37 3sfz_A APAF-1, apoptotic pepti 100.0 9.4E-35 3.2E-39 401.3 35.2 382 1552-2003 654-1184(1249)
38 4ery_A WD repeat-containing pr 100.0 4.3E-33 1.5E-37 325.8 43.8 287 1551-1940 19-311 (312)
39 3iz6_a 40S ribosomal protein R 100.0 2E-34 6.8E-39 349.6 33.5 291 1552-1943 63-377 (380)
40 4g56_B MGC81050 protein; prote 100.0 4.5E-34 1.5E-38 344.7 36.1 290 1688-1984 38-344 (357)
41 4gqb_B Methylosome protein 50; 100.0 1E-33 3.5E-38 341.4 38.7 289 1689-1985 27-333 (344)
42 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.4E-32 4.9E-37 338.2 49.0 280 1687-1984 154-443 (445)
43 4aow_A Guanine nucleotide-bind 100.0 6.6E-33 2.2E-37 324.2 43.4 295 1551-1943 34-339 (340)
44 3odt_A Protein DOA1; ubiquitin 100.0 3.2E-33 1.1E-37 322.5 40.2 291 1681-1986 7-299 (313)
45 1sq9_A Antiviral protein SKI8; 100.0 1.2E-33 4.2E-38 338.8 38.1 297 1684-1984 8-396 (397)
46 3mkq_A Coatomer beta'-subunit; 100.0 9.4E-33 3.2E-37 363.2 47.4 329 1552-1984 10-387 (814)
47 3v7d_B Cell division control p 100.0 2E-32 6.8E-37 337.4 46.2 284 1687-1980 157-460 (464)
48 1erj_A Transcriptional repress 100.0 1.6E-32 5.5E-37 334.4 43.3 303 1553-1942 62-390 (393)
49 1k8k_C P40, ARP2/3 complex 41 100.0 8.3E-33 2.8E-37 327.5 38.0 290 1688-1984 4-362 (372)
50 3ei3_B DNA damage-binding prot 100.0 1.5E-32 5E-37 330.1 37.7 291 1683-1983 64-382 (383)
51 2hes_X YDR267CP; beta-propelle 100.0 3.5E-32 1.2E-36 323.7 40.3 248 1690-1941 56-328 (330)
52 3dm0_A Maltose-binding peripla 100.0 3.8E-32 1.3E-36 354.9 43.9 290 1684-1983 374-693 (694)
53 3zwl_B Eukaryotic translation 100.0 2.5E-31 8.6E-36 312.6 45.3 295 1552-1945 29-350 (369)
54 3i2n_A WD repeat-containing pr 100.0 2.4E-32 8.4E-37 321.0 34.6 295 1685-1985 11-355 (357)
55 2oaj_A Protein SNI1; WD40 repe 100.0 8.8E-32 3E-36 363.4 44.7 375 1554-1990 57-671 (902)
56 4aez_A CDC20, WD repeat-contai 100.0 6E-32 2.1E-36 329.0 38.8 291 1687-1989 86-386 (401)
57 3gre_A Serine/threonine-protei 100.0 7.8E-33 2.7E-37 338.3 31.0 298 1681-1980 51-437 (437)
58 3k26_A Polycomb protein EED; W 100.0 8.1E-33 2.8E-37 325.6 30.0 287 1687-1983 13-366 (366)
59 1r5m_A SIR4-interacting protei 100.0 5.8E-32 2E-36 324.3 37.6 285 1689-1985 42-363 (425)
60 1gxr_A ESG1, transducin-like e 100.0 3E-31 1E-35 308.6 39.7 302 1691-2002 8-311 (337)
61 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-31 4E-36 310.5 35.8 310 1685-1996 4-350 (351)
62 1sq9_A Antiviral protein SKI8; 100.0 2.9E-31 1E-35 318.2 39.9 300 1551-1943 12-397 (397)
63 3dm0_A Maltose-binding peripla 100.0 1.3E-31 4.3E-36 350.0 39.7 293 1552-1940 379-692 (694)
64 3v7d_B Cell division control p 100.0 1.2E-30 4E-35 321.6 43.3 301 1684-2003 113-439 (464)
65 4ggc_A P55CDC, cell division c 100.0 1.9E-30 6.3E-35 300.6 42.4 279 1694-1984 27-316 (318)
66 4gga_A P55CDC, cell division c 100.0 1.1E-30 3.7E-35 320.4 41.5 280 1694-1985 107-397 (420)
67 1k8k_C P40, ARP2/3 complex 41 100.0 9E-31 3.1E-35 310.0 38.6 292 1554-1943 7-363 (372)
68 4a11_B DNA excision repair pro 100.0 9.4E-31 3.2E-35 312.7 38.8 297 1684-1988 35-370 (408)
69 3i2n_A WD repeat-containing pr 100.0 2.7E-31 9.2E-36 312.1 33.4 246 1690-1944 63-356 (357)
70 4e54_B DNA damage-binding prot 100.0 7.7E-32 2.6E-36 332.4 30.1 296 1684-1986 111-433 (435)
71 2j04_B YDR362CP, TAU91; beta p 100.0 1.9E-32 6.5E-37 349.3 25.0 287 1687-1984 202-518 (524)
72 3odt_A Protein DOA1; ubiquitin 100.0 2.6E-30 8.9E-35 298.1 40.4 285 1551-1948 14-303 (313)
73 2pm9_A Protein WEB1, protein t 100.0 7.9E-32 2.7E-36 324.6 28.7 291 1691-1985 11-339 (416)
74 3ei3_B DNA damage-binding prot 100.0 8.8E-31 3E-35 314.6 37.4 284 1552-1941 70-382 (383)
75 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.1E-30 2.1E-34 314.8 45.8 298 1684-2003 110-413 (445)
76 3k26_A Polycomb protein EED; W 100.0 4.8E-31 1.6E-35 310.5 34.2 242 1691-1940 68-365 (366)
77 3dwl_C Actin-related protein 2 100.0 2.1E-32 7.2E-37 326.9 22.4 287 1688-1981 7-377 (377)
78 3mkq_A Coatomer beta'-subunit; 100.0 1.3E-30 4.3E-35 343.0 40.3 295 1682-1984 3-303 (814)
79 4a11_B DNA excision repair pro 100.0 2.7E-30 9.2E-35 308.7 38.1 338 1552-1983 40-405 (408)
80 1yfq_A Cell cycle arrest prote 100.0 1.8E-30 6E-35 304.5 35.4 281 1687-1980 6-321 (342)
81 3vl1_A 26S proteasome regulato 100.0 3.8E-31 1.3E-35 320.2 28.5 282 1693-1984 57-366 (420)
82 1p22_A F-BOX/WD-repeat protein 100.0 4.2E-30 1.4E-34 316.1 37.5 281 1685-1986 126-417 (435)
83 3dw8_B Serine/threonine-protei 100.0 5.6E-30 1.9E-34 312.0 36.3 289 1690-1982 26-445 (447)
84 4e54_B DNA damage-binding prot 100.0 1.1E-30 3.7E-35 322.1 29.8 292 1552-1945 116-434 (435)
85 2pm7_B Protein transport prote 100.0 8.6E-30 2.9E-34 298.3 35.8 251 1686-1940 3-284 (297)
86 3dwl_C Actin-related protein 2 100.0 2.8E-31 9.6E-36 317.2 22.5 287 1554-1939 10-377 (377)
87 4gga_A P55CDC, cell division c 100.0 8.7E-29 3E-33 303.4 43.7 263 1688-1960 143-414 (420)
88 4h5i_A Guanine nucleotide-exch 100.0 5.2E-30 1.8E-34 310.5 31.2 285 1692-1983 14-343 (365)
89 4aez_A CDC20, WD repeat-contai 100.0 3.6E-29 1.2E-33 304.6 38.0 249 1691-1948 133-387 (401)
90 3f3f_A Nucleoporin SEH1; struc 100.0 3.8E-29 1.3E-33 289.4 35.6 306 1550-1948 6-344 (351)
91 2pm7_B Protein transport prote 100.0 4.6E-29 1.6E-33 292.1 36.1 260 1728-1993 3-295 (297)
92 4ggc_A P55CDC, cell division c 100.0 2E-28 7E-33 283.5 40.7 245 1689-1943 64-317 (318)
93 3dw8_B Serine/threonine-protei 100.0 1.7E-29 5.9E-34 307.7 33.2 294 1554-1939 27-444 (447)
94 3jrp_A Fusion protein of prote 100.0 3.4E-29 1.1E-33 296.2 34.6 266 1684-1995 3-299 (379)
95 1yfq_A Cell cycle arrest prote 100.0 5.8E-29 2E-33 291.7 35.9 287 1552-1938 8-321 (342)
96 3mmy_A MRNA export factor; mRN 100.0 6.3E-29 2.1E-33 292.1 36.2 291 1680-1981 27-344 (368)
97 3gre_A Serine/threonine-protei 100.0 1.3E-29 4.6E-34 309.7 31.7 290 1552-1938 60-437 (437)
98 1p22_A F-BOX/WD-repeat protein 100.0 8.1E-29 2.8E-33 304.7 38.3 256 1687-1960 168-432 (435)
99 3bg1_A Protein SEC13 homolog; 100.0 1.1E-29 3.7E-34 300.4 28.3 269 1686-1998 7-308 (316)
100 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-28 3.6E-33 299.8 31.9 296 1693-1991 35-349 (402)
101 4h5i_A Guanine nucleotide-exch 100.0 1.1E-28 3.6E-33 299.0 31.3 245 1687-1941 68-343 (365)
102 3mmy_A MRNA export factor; mRN 100.0 3.2E-28 1.1E-32 286.0 34.0 286 1550-1939 34-344 (368)
103 3bg1_A Protein SEC13 homolog; 100.0 8.5E-29 2.9E-33 292.8 28.7 250 1551-1896 9-292 (316)
104 3jrp_A Fusion protein of prote 100.0 7.8E-28 2.7E-32 284.5 35.2 254 1550-1900 6-290 (379)
105 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1E-27 3.5E-32 296.6 36.9 252 1686-1983 96-391 (450)
106 2j04_A TAU60, YPL007P, hypothe 100.0 6E-29 2E-33 314.9 25.1 324 1552-1972 12-350 (588)
107 2j04_B YDR362CP, TAU91; beta p 100.0 3.4E-29 1.2E-33 319.3 21.1 290 1705-2003 174-489 (524)
108 2aq5_A Coronin-1A; WD40 repeat 100.0 4.2E-27 1.4E-31 285.8 32.1 252 1686-1945 75-346 (402)
109 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-26 3.7E-31 279.9 34.0 282 1684-1983 11-336 (355)
110 3vu4_A KMHSV2; beta-propeller 99.9 1E-25 3.5E-30 271.3 36.3 234 1694-1941 60-336 (355)
111 2xyi_A Probable histone-bindin 99.9 1.2E-25 4E-30 277.2 35.7 255 1728-1984 122-411 (430)
112 3lrv_A PRE-mRNA-splicing facto 99.9 1E-26 3.4E-31 277.1 25.1 277 1699-1985 43-335 (343)
113 3bws_A Protein LP49; two-domai 99.9 2.6E-25 8.9E-30 270.6 37.7 284 1686-1983 117-432 (433)
114 3jro_A Fusion protein of prote 99.9 4.6E-27 1.6E-31 311.2 22.9 253 1551-1900 5-288 (753)
115 3jro_A Fusion protein of prote 99.9 2.8E-26 9.5E-31 303.7 27.9 253 1685-1941 2-285 (753)
116 1l0q_A Surface layer protein; 99.9 2.8E-24 9.4E-29 258.0 42.4 272 1705-1991 3-283 (391)
117 1l0q_A Surface layer protein; 99.9 4.6E-24 1.6E-28 256.1 44.0 279 1693-1985 32-344 (391)
118 2vdu_B TRNA (guanine-N(7)-)-me 99.9 8.6E-25 3E-29 270.4 36.0 308 1692-2003 4-360 (450)
119 2xyi_A Probable histone-bindin 99.9 2.7E-25 9.3E-30 273.9 31.3 256 1686-1941 122-410 (430)
120 3bws_A Protein LP49; two-domai 99.9 5.8E-24 2E-28 258.8 39.8 241 1688-1941 165-432 (433)
121 2j04_A TAU60, YPL007P, hypothe 99.9 1.9E-25 6.7E-30 282.9 26.9 262 1690-1982 13-296 (588)
122 4gq1_A NUP37; propeller, trans 99.9 5.3E-25 1.8E-29 268.7 26.2 261 1689-1982 86-388 (393)
123 1nir_A Nitrite reductase; hemo 99.9 4.9E-23 1.7E-27 263.6 42.2 287 1695-1991 181-522 (543)
124 3lrv_A PRE-mRNA-splicing facto 99.9 2.2E-24 7.5E-29 257.0 26.1 237 1741-1989 43-299 (343)
125 2w18_A PALB2, fancn, partner a 99.9 1.4E-22 4.7E-27 243.8 36.5 281 1694-1981 41-355 (356)
126 4gq1_A NUP37; propeller, trans 99.9 1.1E-23 3.7E-28 257.2 21.8 210 1685-1896 129-388 (393)
127 2ecf_A Dipeptidyl peptidase IV 99.9 1.6E-21 5.6E-26 255.0 37.1 279 1693-1984 109-460 (741)
128 1k32_A Tricorn protease; prote 99.9 7.4E-21 2.5E-25 260.3 36.5 276 1694-1985 153-463 (1045)
129 2w18_A PALB2, fancn, partner a 99.9 8.7E-21 3E-25 228.2 32.4 284 1558-1939 42-355 (356)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 5E-21 1.7E-25 236.2 29.4 292 1692-2002 62-402 (415)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.2E-21 2.5E-25 234.8 30.1 245 1704-1964 143-409 (415)
132 1nir_A Nitrite reductase; hemo 99.9 2E-19 6.8E-24 230.3 38.2 253 1693-1951 222-524 (543)
133 3u4y_A Uncharacterized protein 99.9 3E-19 1E-23 209.4 35.6 277 1698-1985 3-306 (331)
134 1ri6_A Putative isomerase YBHE 99.9 5.1E-19 1.7E-23 206.5 35.9 282 1706-1995 7-321 (343)
135 1pby_B Quinohemoprotein amine 99.9 3.1E-19 1.1E-23 207.8 33.2 275 1705-1994 2-321 (337)
136 2ecf_A Dipeptidyl peptidase IV 99.9 5.1E-20 1.7E-24 240.9 28.9 284 1692-1983 36-413 (741)
137 3vgz_A Uncharacterized protein 99.8 1.3E-18 4.4E-23 204.8 37.8 271 1691-1974 39-335 (353)
138 1k32_A Tricorn protease; prote 99.8 2.7E-19 9.4E-24 244.8 35.2 281 1686-1984 197-503 (1045)
139 2z3z_A Dipeptidyl aminopeptida 99.8 9.1E-19 3.1E-23 228.1 36.5 281 1691-1985 80-437 (706)
140 1ri6_A Putative isomerase YBHE 99.8 4E-18 1.4E-22 198.9 37.9 265 1691-1964 36-334 (343)
141 1xfd_A DIP, dipeptidyl aminope 99.8 2.4E-19 8.4E-24 233.5 30.3 286 1694-1989 62-449 (723)
142 3vgz_A Uncharacterized protein 99.8 1.1E-17 3.7E-22 196.8 39.5 227 1695-1932 91-335 (353)
143 2ojh_A Uncharacterized protein 99.8 6.5E-19 2.2E-23 199.6 26.3 253 1709-1974 17-293 (297)
144 1xfd_A DIP, dipeptidyl aminope 99.8 1.4E-19 4.9E-24 235.8 23.1 282 1694-1983 18-393 (723)
145 3u4y_A Uncharacterized protein 99.8 2.2E-17 7.4E-22 193.6 38.4 242 1693-1943 41-306 (331)
146 2z3z_A Dipeptidyl aminopeptida 99.8 3E-18 1E-22 223.2 32.0 277 1692-1980 120-473 (706)
147 3o4h_A Acylamino-acid-releasin 99.8 1.7E-18 5.7E-23 221.2 25.5 271 1692-1983 21-315 (582)
148 3hfq_A Uncharacterized protein 99.8 6.9E-17 2.4E-21 191.5 37.1 271 1713-1988 15-324 (347)
149 1pby_B Quinohemoprotein amine 99.8 1.8E-17 6.3E-22 192.9 31.6 240 1695-1951 36-320 (337)
150 3scy_A Hypothetical bacterial 99.8 6.8E-17 2.3E-21 192.9 37.0 279 1704-1986 13-342 (361)
151 2ojh_A Uncharacterized protein 99.8 3.6E-18 1.2E-22 193.6 21.8 240 1686-1932 35-293 (297)
152 1jmx_B Amine dehydrogenase; ox 99.8 7.7E-17 2.6E-21 188.9 32.9 273 1697-1992 4-334 (349)
153 1jmx_B Amine dehydrogenase; ox 99.8 1.3E-16 4.3E-21 187.1 31.6 247 1694-1951 44-335 (349)
154 1z68_A Fibroblast activation p 99.8 1.8E-17 6.3E-22 216.5 26.3 292 1694-1991 61-451 (719)
155 3pe7_A Oligogalacturonate lyas 99.7 1.1E-16 3.6E-21 192.0 26.9 289 1684-1982 22-381 (388)
156 3scy_A Hypothetical bacterial 99.7 1.5E-15 5E-20 181.4 34.7 266 1691-1961 48-360 (361)
157 3o4h_A Acylamino-acid-releasin 99.7 1.4E-16 4.7E-21 203.5 27.5 226 1693-1941 65-315 (582)
158 2oit_A Nucleoporin 214KDA; NH2 99.7 8.6E-16 2.9E-20 191.2 31.1 290 1691-1983 35-405 (434)
159 3hfq_A Uncharacterized protein 99.7 2E-15 6.8E-20 179.0 31.0 250 1690-1945 37-323 (347)
160 1z68_A Fibroblast activation p 99.7 8.6E-17 2.9E-21 210.2 19.9 277 1697-1983 20-391 (719)
161 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.3E-14 4.6E-19 174.8 36.6 281 1706-1993 4-350 (365)
162 4a5s_A Dipeptidyl peptidase 4 99.7 7E-15 2.4E-19 194.2 36.5 290 1695-1990 64-456 (740)
163 2oit_A Nucleoporin 214KDA; NH2 99.7 3.3E-15 1.1E-19 186.0 27.7 269 1714-1991 23-342 (434)
164 3c5m_A Oligogalacturonate lyas 99.7 2E-15 6.9E-20 180.4 22.4 279 1692-1985 35-386 (396)
165 3pe7_A Oligogalacturonate lyas 99.6 2E-14 6.8E-19 172.2 27.2 240 1692-1939 80-380 (388)
166 2oiz_A Aromatic amine dehydrog 99.6 8.7E-14 3E-18 168.8 32.8 256 1697-1965 54-360 (361)
167 4a5s_A Dipeptidyl peptidase 4 99.6 1E-14 3.5E-19 192.7 26.5 279 1693-1982 17-397 (740)
168 1q7f_A NHL, brain tumor CG1071 99.6 1.3E-13 4.5E-18 159.1 31.7 241 1732-1984 27-281 (286)
169 3fvz_A Peptidyl-glycine alpha- 99.6 1.3E-13 4.6E-18 164.1 30.7 254 1692-1984 23-323 (329)
170 3azo_A Aminopeptidase; POP fam 99.6 8.1E-14 2.8E-18 180.2 30.2 290 1685-1986 16-372 (662)
171 3c5m_A Oligogalacturonate lyas 99.6 4.6E-14 1.6E-18 168.7 24.5 237 1697-1944 85-387 (396)
172 3azo_A Aminopeptidase; POP fam 99.6 1.5E-13 5.2E-18 177.6 31.3 278 1698-1980 82-408 (662)
173 2oiz_A Aromatic amine dehydrog 99.6 1.8E-13 6.1E-18 166.0 29.5 273 1703-1990 14-343 (361)
174 1jof_A Carboxy-CIS,CIS-muconat 99.6 1.5E-13 5.1E-18 165.7 27.6 247 1693-1942 40-342 (365)
175 1qks_A Cytochrome CD1 nitrite 99.6 4.4E-12 1.5E-16 163.4 42.7 290 1694-1992 198-547 (567)
176 2z2n_A Virginiamycin B lyase; 99.6 1.1E-11 3.8E-16 142.2 40.3 283 1688-1984 10-296 (299)
177 1q7f_A NHL, brain tumor CG1071 99.6 1.9E-12 6.4E-17 149.4 33.2 243 1689-1943 26-282 (286)
178 2dg1_A DRP35, lactonase; beta 99.6 6.6E-13 2.3E-17 156.4 29.1 270 1693-1974 6-301 (333)
179 2gop_A Trilobed protease; beta 99.5 4.2E-12 1.4E-16 150.0 32.4 257 1693-1985 15-332 (347)
180 2dg1_A DRP35, lactonase; beta 99.5 4.2E-12 1.4E-16 149.6 29.3 236 1689-1932 41-301 (333)
181 2gop_A Trilobed protease; beta 99.5 1.1E-11 3.7E-16 146.4 31.3 231 1694-1953 60-341 (347)
182 3dsm_A Uncharacterized protein 99.5 1.1E-11 3.8E-16 148.0 31.0 266 1712-1992 15-310 (328)
183 2qc5_A Streptogramin B lactona 99.5 1.8E-10 6.1E-15 132.1 38.4 279 1690-1982 17-299 (300)
184 3e5z_A Putative gluconolactona 99.5 2.5E-11 8.6E-16 141.1 31.2 245 1685-1945 20-290 (296)
185 3e5z_A Putative gluconolactona 99.4 3.2E-11 1.1E-15 140.3 31.0 245 1724-1985 17-288 (296)
186 2xdw_A Prolyl endopeptidase; a 99.4 2.4E-11 8.3E-16 159.6 33.8 276 1702-1985 81-416 (710)
187 3fvz_A Peptidyl-glycine alpha- 99.4 4.1E-11 1.4E-15 142.6 30.4 200 1690-1897 88-322 (329)
188 2z2n_A Virginiamycin B lyase; 99.4 1.5E-09 5E-14 124.5 41.0 237 1693-1942 57-296 (299)
189 1rwi_B Serine/threonine-protei 99.4 3.4E-11 1.2E-15 137.0 26.2 241 1736-1985 25-266 (270)
190 2xdw_A Prolyl endopeptidase; a 99.4 3.7E-11 1.3E-15 157.9 30.0 247 1690-1943 122-416 (710)
191 3dsm_A Uncharacterized protein 99.4 1.1E-10 3.8E-15 139.3 30.8 252 1694-1960 45-319 (328)
192 2bkl_A Prolyl endopeptidase; m 99.4 3.9E-11 1.3E-15 157.4 27.9 279 1702-1991 77-404 (695)
193 2bkl_A Prolyl endopeptidase; m 99.4 1.3E-11 4.6E-16 161.8 23.4 196 1696-1900 171-400 (695)
194 1qks_A Cytochrome CD1 nitrite 99.4 5.6E-10 1.9E-14 143.9 37.0 274 1702-1984 165-478 (567)
195 1rwi_B Serine/threonine-protei 99.4 8.3E-11 2.8E-15 133.8 25.6 239 1694-1943 25-266 (270)
196 2mad_H Methylamine dehydrogena 99.3 3.2E-09 1.1E-13 129.9 37.6 273 1701-1989 29-356 (373)
197 3no2_A Uncharacterized protein 99.3 6.5E-10 2.2E-14 130.3 29.9 214 1745-1971 4-231 (276)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1E-09 3.5E-14 127.5 30.5 244 1733-1984 16-300 (314)
199 3no2_A Uncharacterized protein 99.3 8.2E-10 2.8E-14 129.4 29.4 237 1702-1950 3-261 (276)
200 2mad_H Methylamine dehydrogena 99.3 1.1E-08 3.9E-13 125.0 40.2 239 1697-1948 70-357 (373)
201 1yr2_A Prolyl oligopeptidase; 99.3 3.8E-10 1.3E-14 149.3 28.9 274 1702-1985 116-443 (741)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 3.2E-09 1.1E-13 123.2 31.4 242 1689-1941 14-299 (314)
203 3sjl_D Methylamine dehydrogena 99.2 3.4E-09 1.2E-13 130.2 31.5 281 1700-1994 40-374 (386)
204 2qc5_A Streptogramin B lactona 99.2 2.3E-08 7.7E-13 114.6 35.4 239 1733-1982 18-259 (300)
205 3sjl_D Methylamine dehydrogena 99.2 3.9E-09 1.3E-13 129.7 30.6 253 1697-1963 82-384 (386)
206 1yr2_A Prolyl oligopeptidase; 99.2 1.3E-09 4.4E-14 144.2 25.7 245 1691-1943 161-443 (741)
207 3c75_H MADH, methylamine dehyd 99.1 8E-09 2.7E-13 128.7 29.3 275 1702-1990 82-409 (426)
208 3g4e_A Regucalcin; six bladed 99.1 4.8E-08 1.6E-12 114.5 32.8 231 1731-1972 9-261 (297)
209 3hrp_A Uncharacterized protein 99.1 2.4E-08 8.3E-13 123.5 31.8 240 1693-1939 131-408 (409)
210 3c75_H MADH, methylamine dehyd 99.1 1.7E-08 5.9E-13 125.7 29.7 241 1697-1948 122-409 (426)
211 1kb0_A Quinohemoprotein alcoho 99.1 1.2E-08 4.1E-13 134.3 29.7 280 1704-1992 77-516 (677)
212 1yiq_A Quinohemoprotein alcoho 99.1 2.8E-08 9.5E-13 131.0 32.8 284 1704-1991 70-513 (689)
213 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.3E-07 4.5E-12 113.8 35.2 260 1703-1980 102-375 (376)
214 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.4E-07 4.7E-12 113.6 35.0 270 1704-1991 53-345 (376)
215 3dr2_A Exported gluconolactona 99.0 4.3E-08 1.5E-12 115.2 28.4 236 1686-1938 38-303 (305)
216 2ghs_A AGR_C_1268P; regucalcin 99.0 2.4E-07 8.1E-12 110.4 34.8 225 1736-1973 50-292 (326)
217 3g4e_A Regucalcin; six bladed 99.0 1.9E-07 6.3E-12 109.5 32.7 229 1689-1930 9-261 (297)
218 1xip_A Nucleoporin NUP159; bet 99.0 3.7E-09 1.3E-13 130.1 18.8 172 1694-1885 39-232 (388)
219 3dr2_A Exported gluconolactona 99.0 5.3E-08 1.8E-12 114.4 27.4 233 1726-1975 36-299 (305)
220 1xip_A Nucleoporin NUP159; bet 99.0 5.8E-09 2E-13 128.4 19.9 172 1784-1970 39-231 (388)
221 3hrp_A Uncharacterized protein 99.0 1.5E-07 5.3E-12 116.3 32.7 237 1735-1982 131-409 (409)
222 3iuj_A Prolyl endopeptidase; h 99.0 1.4E-08 4.7E-13 133.6 23.6 246 1690-1944 126-408 (693)
223 2ghs_A AGR_C_1268P; regucalcin 99.0 4.3E-07 1.5E-11 108.2 32.4 223 1694-1931 50-292 (326)
224 2qe8_A Uncharacterized protein 98.9 4.3E-09 1.5E-13 126.2 14.2 263 1693-1980 17-318 (343)
225 3iuj_A Prolyl endopeptidase; h 98.9 8.8E-08 3E-12 126.0 27.4 240 1733-1985 127-407 (693)
226 1kb0_A Quinohemoprotein alcoho 98.9 8.8E-08 3E-12 126.0 25.6 276 1704-1983 128-567 (677)
227 2qe8_A Uncharacterized protein 98.8 1.8E-07 6E-12 112.2 24.2 225 1690-1937 64-317 (343)
228 3hxj_A Pyrrolo-quinoline quino 98.8 3.7E-08 1.3E-12 115.1 17.2 262 1696-1983 23-284 (330)
229 3hxj_A Pyrrolo-quinoline quino 98.8 7.7E-08 2.6E-12 112.4 19.8 268 1691-1984 58-325 (330)
230 1kv9_A Type II quinohemoprotei 98.8 1.6E-06 5.4E-11 114.0 33.1 282 1704-1992 66-497 (668)
231 1yiq_A Quinohemoprotein alcoho 98.8 6.8E-07 2.3E-11 117.8 29.6 263 1704-1969 121-534 (689)
232 1mda_H Methylamine dehydrogena 98.8 2.5E-07 8.5E-12 113.3 22.4 256 1715-1992 47-355 (368)
233 1mda_H Methylamine dehydrogena 98.8 1.3E-07 4.6E-12 115.6 19.6 245 1697-1961 69-365 (368)
234 4a2l_A BT_4663, two-component 98.7 3.9E-05 1.3E-09 102.3 43.4 278 1693-1985 263-573 (795)
235 2hz6_A Endoplasmic reticulum t 98.7 8.8E-09 3E-13 125.5 7.3 255 1703-1982 8-278 (369)
236 2hz6_A Endoplasmic reticulum t 98.7 1.2E-08 4.1E-13 124.3 6.3 203 1745-1965 8-216 (369)
237 4a2l_A BT_4663, two-component 98.6 4E-05 1.4E-09 102.1 39.2 282 1692-1985 214-528 (795)
238 2ece_A 462AA long hypothetical 98.6 1.3E-05 4.6E-10 99.7 31.6 226 1744-1971 93-399 (462)
239 2ad6_A Methanol dehydrogenase 98.6 1.4E-05 5E-10 103.1 33.5 282 1704-1992 62-503 (571)
240 1w6s_A Methanol dehydrogenase 98.6 2.4E-05 8.3E-10 101.5 34.0 283 1704-1991 62-511 (599)
241 1fwx_A Nitrous oxide reductase 98.6 2.5E-06 8.6E-11 109.3 23.3 250 1702-1985 99-433 (595)
242 1npe_A Nidogen, entactin; glyc 98.5 7.8E-05 2.7E-09 85.6 32.8 248 1705-1965 2-263 (267)
243 1flg_A Protein (quinoprotein e 98.5 5.7E-05 2E-09 97.8 33.5 281 1704-1992 68-525 (582)
244 1kv9_A Type II quinohemoprotei 98.4 2E-05 6.9E-10 103.6 27.3 263 1704-1971 117-520 (668)
245 3v9f_A Two-component system se 98.4 0.00017 5.9E-09 95.9 36.0 284 1693-1985 211-526 (781)
246 2fp8_A Strictosidine synthase; 98.4 8.7E-05 3E-09 87.7 28.4 238 1692-1940 18-312 (322)
247 2iwa_A Glutamine cyclotransfer 98.4 5.4E-05 1.9E-09 88.7 25.8 196 1784-1984 22-238 (266)
248 3v9f_A Two-component system se 98.3 0.00026 8.9E-09 94.2 35.2 282 1692-1985 257-570 (781)
249 1npe_A Nidogen, entactin; glyc 98.3 0.00063 2.2E-08 78.0 33.9 237 1747-1991 2-246 (267)
250 2ece_A 462AA long hypothetical 98.3 0.0001 3.4E-09 92.0 28.6 188 1796-1984 99-353 (462)
251 2fp8_A Strictosidine synthase; 98.3 4.9E-05 1.7E-09 89.9 25.0 238 1736-1984 20-314 (322)
252 1k3i_A Galactose oxidase precu 98.3 1.7E-05 5.8E-10 103.8 21.9 271 1697-1972 190-530 (656)
253 2ad6_A Methanol dehydrogenase 98.3 0.00012 4.2E-09 94.5 29.5 261 1704-1969 115-523 (571)
254 2iwa_A Glutamine cyclotransfer 98.3 0.00022 7.6E-09 83.6 27.9 208 1725-1942 10-238 (266)
255 1w6s_A Methanol dehydrogenase 98.3 0.00013 4.3E-09 94.9 28.2 256 1706-1966 123-529 (599)
256 2xbg_A YCF48-like protein; pho 98.2 0.0019 6.6E-08 77.1 35.5 273 1692-1980 35-319 (327)
257 3nol_A Glutamine cyclotransfer 98.2 7E-05 2.4E-09 87.4 21.8 183 1784-1972 44-244 (262)
258 1flg_A Protein (quinoprotein e 98.2 0.00016 5.4E-09 93.7 27.1 261 1704-1967 117-543 (582)
259 2p4o_A Hypothetical protein; p 98.2 0.00032 1.1E-08 82.6 27.1 235 1725-1974 23-279 (306)
260 2p4o_A Hypothetical protein; p 98.1 0.00069 2.4E-08 79.7 29.1 229 1693-1932 32-279 (306)
261 3nok_A Glutaminyl cyclase; bet 98.1 0.00018 6.3E-09 84.0 22.3 182 1784-1971 56-253 (268)
262 3mbr_X Glutamine cyclotransfer 98.0 0.0005 1.7E-08 79.5 23.9 193 1773-1972 10-223 (243)
263 3nol_A Glutamine cyclotransfer 98.0 0.00083 2.8E-08 78.4 25.7 195 1725-1931 32-245 (262)
264 1fwx_A Nitrous oxide reductase 98.0 0.00017 5.9E-09 92.6 20.8 183 1796-1983 105-361 (595)
265 1ijq_A LDL receptor, low-densi 98.0 0.012 4E-07 70.0 35.1 237 1707-1950 4-247 (316)
266 1k3i_A Galactose oxidase precu 98.0 0.00034 1.1E-08 91.5 23.4 231 1696-1930 246-530 (656)
267 3mbr_X Glutamine cyclotransfer 97.9 0.0029 9.9E-08 73.2 26.5 194 1725-1930 10-223 (243)
268 3nok_A Glutaminyl cyclase; bet 97.9 0.0014 4.9E-08 76.5 24.0 194 1725-1930 44-254 (268)
269 2xe4_A Oligopeptidase B; hydro 97.9 0.00093 3.2E-08 88.9 25.3 246 1694-1985 175-460 (751)
270 3v64_C Agrin; beta propeller, 97.8 0.0097 3.3E-07 71.9 31.8 257 1691-1960 32-294 (349)
271 3p5b_L Low density lipoprotein 97.8 0.013 4.5E-07 72.1 33.2 249 1706-1960 85-339 (400)
272 2xzh_A Clathrin heavy chain 1; 97.8 0.027 9.4E-07 67.4 33.5 260 1712-1984 47-333 (365)
273 3v65_B Low-density lipoprotein 97.8 0.018 6.3E-07 70.4 32.9 255 1693-1960 77-337 (386)
274 3qqz_A Putative uncharacterize 97.7 0.0063 2.2E-07 70.9 26.8 203 1777-1982 21-252 (255)
275 3v64_C Agrin; beta propeller, 97.7 0.02 6.9E-07 69.1 32.0 232 1748-1991 46-283 (349)
276 1bpo_A Protein (clathrin); cla 97.7 0.067 2.3E-06 66.3 35.1 260 1712-1984 46-332 (494)
277 1ijq_A LDL receptor, low-densi 97.7 0.05 1.7E-06 64.5 33.6 232 1748-1991 3-246 (316)
278 4hw6_A Hypothetical protein, I 97.6 0.021 7.1E-07 71.2 31.3 239 1693-1940 139-432 (433)
279 3tc9_A Hypothetical hydrolase; 97.6 0.013 4.6E-07 72.8 29.3 240 1693-1940 137-429 (430)
280 3v65_B Low-density lipoprotein 97.6 0.018 6.3E-07 70.4 29.8 232 1748-1991 89-326 (386)
281 3sov_A LRP-6, low-density lipo 97.6 0.027 9.3E-07 67.3 30.4 229 1755-1991 12-246 (318)
282 3sov_A LRP-6, low-density lipo 97.5 0.04 1.4E-06 65.8 30.6 238 1713-1960 12-257 (318)
283 3qqz_A Putative uncharacterize 97.5 0.017 6E-07 67.2 26.6 203 1687-1895 21-251 (255)
284 3m0c_C LDL receptor, low-densi 97.5 0.037 1.3E-06 74.1 32.9 237 1706-1949 397-640 (791)
285 3tc9_A Hypothetical hydrolase; 97.5 0.013 4.5E-07 72.8 26.6 238 1736-1982 138-429 (430)
286 3ei3_A DNA damage-binding prot 97.5 0.28 9.6E-06 68.4 42.0 269 1704-1985 617-959 (1158)
287 4hw6_A Hypothetical protein, I 97.5 0.011 3.8E-07 73.7 25.2 237 1736-1982 140-432 (433)
288 2xe4_A Oligopeptidase B; hydro 97.5 0.0034 1.2E-07 83.5 21.9 152 1828-1981 224-398 (751)
289 3s94_A LRP-6, low-density lipo 97.5 0.27 9.2E-06 64.1 39.0 283 1694-1985 85-425 (619)
290 3p5b_L Low density lipoprotein 97.4 0.079 2.7E-06 65.2 31.9 233 1748-1991 85-328 (400)
291 2vpj_A Kelch-like protein 12; 97.4 0.016 5.6E-07 67.3 23.5 236 1745-1994 14-288 (301)
292 2vpj_A Kelch-like protein 12; 97.2 0.03 1E-06 65.1 23.6 234 1703-1943 14-280 (301)
293 2xbg_A YCF48-like protein; pho 97.2 0.12 4E-06 61.7 29.2 232 1693-1938 80-319 (327)
294 3ei3_A DNA damage-binding prot 97.2 0.33 1.1E-05 67.8 37.5 284 1692-1988 553-918 (1158)
295 2xn4_A Kelch-like protein 2; s 97.2 0.033 1.1E-06 64.8 23.6 233 1746-1991 16-283 (302)
296 3amr_A 3-phytase; beta-propell 97.2 0.057 2E-06 65.5 25.7 189 1794-1990 41-271 (355)
297 3ii7_A Kelch-like protein 7; p 97.1 0.057 2E-06 62.9 25.2 236 1746-1994 12-282 (306)
298 2ism_A Putative oxidoreductase 97.1 0.075 2.6E-06 64.2 26.6 230 1692-1929 30-333 (352)
299 3s94_A LRP-6, low-density lipo 97.0 1.3 4.3E-05 57.9 38.6 292 1692-1986 170-513 (619)
300 1n7d_A LDL receptor, low-densi 97.0 0.002 6.8E-08 85.2 12.5 243 1713-1961 385-634 (699)
301 2xn4_A Kelch-like protein 2; s 97.0 0.048 1.7E-06 63.4 22.5 229 1704-1944 16-279 (302)
302 3kya_A Putative phosphatase; s 96.9 0.25 8.6E-06 62.7 29.8 246 1694-1945 140-479 (496)
303 4asc_A Kelch repeat and BTB do 96.9 0.067 2.3E-06 62.8 23.3 230 1748-1991 7-284 (315)
304 3ott_A Two-component system se 96.9 1 3.5E-05 59.5 37.0 273 1693-1982 63-351 (758)
305 1zgk_A Kelch-like ECH-associat 96.9 0.062 2.1E-06 63.0 22.3 236 1745-1994 24-297 (308)
306 3m0c_C LDL receptor, low-densi 96.9 0.44 1.5E-05 63.9 32.8 224 1756-1990 404-639 (791)
307 3amr_A 3-phytase; beta-propell 96.9 0.14 4.8E-06 62.2 25.2 193 1746-1949 40-272 (355)
308 3ii7_A Kelch-like protein 7; p 96.9 0.087 3E-06 61.4 23.1 227 1705-1943 13-274 (306)
309 3kya_A Putative phosphatase; s 96.8 0.13 4.4E-06 65.3 25.3 241 1736-1986 140-478 (496)
310 2p9w_A MAL S 1 allergenic prot 96.8 0.14 4.8E-06 61.7 24.0 204 1778-1983 8-265 (334)
311 3ott_A Two-component system se 96.7 1.3 4.5E-05 58.5 35.7 279 1694-1985 192-504 (758)
312 2uvk_A YJHT; unknown function, 96.7 0.045 1.6E-06 65.3 19.7 241 1745-1991 19-350 (357)
313 3a9g_A Putative uncharacterize 96.7 0.5 1.7E-05 57.2 28.8 233 1692-1929 28-330 (354)
314 2p9w_A MAL S 1 allergenic prot 96.6 0.03 1E-06 67.5 17.1 158 1826-1984 14-216 (334)
315 4a0p_A LRP6, LRP-6, low-densit 96.6 1.1 3.9E-05 58.4 32.9 231 1706-1949 8-245 (628)
316 1zgk_A Kelch-like ECH-associat 96.5 0.11 3.9E-06 60.7 21.2 230 1702-1944 23-290 (308)
317 2woz_A Kelch repeat and BTB do 96.5 0.23 8E-06 58.2 23.5 228 1748-1990 18-293 (318)
318 4asc_A Kelch repeat and BTB do 96.3 0.32 1.1E-05 57.0 23.1 229 1706-1945 7-281 (315)
319 2ism_A Putative oxidoreductase 96.3 0.39 1.3E-05 57.9 24.1 224 1735-1971 31-333 (352)
320 4a0p_A LRP6, LRP-6, low-densit 96.2 5.4 0.00018 52.1 46.2 280 1694-1984 81-421 (628)
321 3a9g_A Putative uncharacterize 96.2 0.96 3.3E-05 54.7 27.0 225 1734-1971 28-330 (354)
322 3das_A Putative oxidoreductase 96.2 3.1 0.00011 50.4 31.2 243 1684-1929 23-326 (347)
323 1xi4_A Clathrin heavy chain; a 96.2 0.21 7.2E-06 69.6 22.9 260 1712-1984 46-332 (1630)
324 2g8s_A Glucose/sorbosone dehyd 96.0 1.1 3.8E-05 54.0 26.3 240 1692-1934 17-347 (353)
325 3sre_A PON1, serum paraoxonase 95.9 0.51 1.7E-05 57.5 22.9 183 1785-1973 52-287 (355)
326 1n7d_A LDL receptor, low-densi 95.9 0.022 7.5E-07 75.4 11.4 226 1755-1990 385-621 (699)
327 2g8s_A Glucose/sorbosone dehyd 95.8 1.1 3.7E-05 54.1 25.1 229 1736-1971 19-341 (353)
328 3sre_A PON1, serum paraoxonase 95.6 6.1 0.00021 48.1 31.3 197 1692-1895 49-296 (355)
329 2woz_A Kelch repeat and BTB do 95.6 0.99 3.4E-05 52.9 22.8 229 1706-1946 18-292 (318)
330 2xzh_A Clathrin heavy chain 1; 95.5 6.3 0.00021 47.6 28.9 232 1697-1941 71-332 (365)
331 3das_A Putative oxidoreductase 95.3 3.3 0.00011 50.2 26.5 233 1730-1971 27-326 (347)
332 2be1_A Serine/threonine-protei 95.0 0.045 1.5E-06 66.3 9.2 190 1705-1902 11-236 (339)
333 3pbp_A Nucleoporin NUP82; beta 95.0 0.79 2.7E-05 56.9 19.7 144 1833-1979 29-208 (452)
334 2uvk_A YJHT; unknown function, 94.9 0.59 2E-05 55.5 18.4 236 1703-1947 19-348 (357)
335 2be1_A Serine/threonine-protei 94.8 0.34 1.2E-05 58.6 16.0 192 1746-1946 10-236 (339)
336 3pbp_A Nucleoporin NUP82; beta 94.6 1.2 3.9E-05 55.5 19.9 135 1802-1937 40-208 (452)
337 1bpo_A Protein (clathrin); cla 94.6 13 0.00046 46.4 30.8 232 1697-1941 70-331 (494)
338 1cru_A Protein (soluble quinop 94.1 12 0.00042 46.7 28.5 108 1692-1799 26-160 (454)
339 2zwa_A Leucine carboxyl methyl 93.9 1.4 4.7E-05 58.2 20.1 196 1702-1901 396-639 (695)
340 2zwa_A Leucine carboxyl methyl 93.6 1.4 4.8E-05 58.1 19.5 197 1744-1945 396-639 (695)
341 1tl2_A L10, protein (tachylect 93.2 1.2 4.1E-05 50.9 15.1 176 1795-1981 6-206 (236)
342 3b7f_A Glycosyl hydrolase, BNR 92.1 26 0.00089 42.2 28.6 279 1705-1991 23-379 (394)
343 1cru_A Protein (soluble quinop 91.5 13 0.00045 46.5 23.4 159 1824-1984 26-260 (454)
344 3sbq_A Nitrous-oxide reductase 91.5 41 0.0014 43.4 27.4 274 1702-1985 140-480 (638)
345 3s25_A Hypothetical 7-bladed b 90.4 14 0.00047 43.7 21.0 162 1802-1985 87-257 (302)
346 1tl2_A L10, protein (tachylect 90.3 3.4 0.00012 47.3 14.5 149 1693-1848 41-203 (236)
347 3qhy_B Beta-lactamase inhibito 88.9 13 0.00044 43.4 18.9 222 1736-1983 25-246 (282)
348 1suu_A DNA gyrase subunit A; t 88.2 48 0.0017 39.3 29.6 237 1744-1982 6-282 (312)
349 1zi0_A DNA gyrase subunit A; b 88.1 48 0.0017 39.2 25.7 236 1702-1941 1-277 (307)
350 3qhy_B Beta-lactamase inhibito 87.8 12 0.0004 43.8 17.6 223 1694-1942 25-247 (282)
351 2wg3_C Hedgehog-interacting pr 87.5 68 0.0023 40.2 26.0 235 1693-1929 14-354 (463)
352 1zi0_A DNA gyrase subunit A; b 87.4 53 0.0018 38.9 27.0 238 1744-1983 1-277 (307)
353 3uc1_A DNA gyrase subunit A; D 87.2 44 0.0015 40.1 22.4 235 1704-1940 3-278 (327)
354 1xi4_A Clathrin heavy chain; a 86.7 14 0.00049 52.1 19.5 232 1700-1941 73-331 (1630)
355 3s25_A Hypothetical 7-bladed b 86.2 60 0.002 38.2 29.6 209 1701-1941 22-255 (302)
356 3no0_A DNA gyrase subunit A; D 85.9 50 0.0017 38.6 21.4 200 1693-1896 24-245 (276)
357 3b7f_A Glycosyl hydrolase, BNR 85.8 68 0.0023 38.5 24.9 259 1693-1961 55-391 (394)
358 1wp5_A Topoisomerase IV; broke 85.7 67 0.0023 38.4 25.1 236 1744-1983 3-277 (323)
359 3sbq_A Nitrous-oxide reductase 81.6 1.3E+02 0.0046 38.7 25.3 187 1795-1983 144-408 (638)
360 3l6v_A GYRA, DNA gyrase subuni 81.6 1E+02 0.0036 37.5 26.8 236 1743-1981 4-314 (370)
361 1wp5_A Topoisomerase IV; broke 80.8 1E+02 0.0035 36.8 23.8 237 1702-1940 3-276 (323)
362 3uc1_A DNA gyrase subunit A; D 80.4 1.1E+02 0.0036 36.7 24.2 205 1693-1897 42-279 (327)
363 4hvt_A Ritya.17583.B, post-pro 78.0 1E+02 0.0036 40.7 22.4 238 1695-1940 131-429 (711)
364 3no0_A DNA gyrase subunit A; D 75.8 1.3E+02 0.0043 35.1 24.3 186 1792-1983 34-246 (276)
365 2wg3_C Hedgehog-interacting pr 69.0 2.4E+02 0.0081 35.3 30.1 232 1736-1971 15-354 (463)
366 3kci_A Probable E3 ubiquitin-p 68.5 2.1E+02 0.0071 34.5 30.3 270 1705-1982 11-344 (389)
367 4hvt_A Ritya.17583.B, post-pro 67.8 3.1E+02 0.011 36.3 26.7 238 1738-1982 132-429 (711)
368 3q6k_A 43.2 kDa salivary prote 67.2 2.3E+02 0.008 34.6 23.3 169 1803-1971 123-342 (381)
369 1suu_A DNA gyrase subunit A; t 60.2 2.7E+02 0.0091 32.9 29.6 194 1702-1897 6-231 (312)
370 2zux_A YESW protein; beta-prop 58.0 4.1E+02 0.014 34.3 23.2 168 1812-1991 351-540 (591)
371 3l6v_A GYRA, DNA gyrase subuni 57.5 3.3E+02 0.011 33.1 29.3 236 1701-1939 4-314 (370)
372 4gq2_M Nucleoporin NUP120; bet 50.2 6.5E+02 0.022 34.3 25.2 38 1868-1905 237-274 (950)
373 1sqj_A OXG-RCBH, oligoxylogluc 48.9 6.1E+02 0.021 33.7 24.3 150 1692-1845 14-190 (789)
374 3kci_A Probable E3 ubiquitin-p 45.2 4.7E+02 0.016 31.3 30.2 232 1704-1940 62-344 (389)
375 4gq2_M Nucleoporin NUP120; bet 41.9 8.1E+02 0.028 33.4 21.3 38 1954-1991 237-274 (950)
376 1zvt_A Topoisomerase IV subuni 37.9 2.4E+02 0.0081 32.4 13.0 144 1838-1983 4-163 (256)
377 3q6k_A 43.2 kDa salivary prote 36.6 6.7E+02 0.023 30.6 22.3 128 1800-1928 178-341 (381)
378 3mvd_K Regulator of chromosome 28.5 8.4E+02 0.029 29.3 34.7 234 1736-1982 76-373 (423)
379 4fhn_B Nucleoporin NUP120; pro 27.1 1.4E+03 0.049 31.5 20.4 37 1912-1948 239-275 (1139)
380 3mvd_K Regulator of chromosome 26.5 9E+02 0.031 29.0 28.6 196 1694-1897 128-374 (423)
381 2cn3_A Xyloglucanase, beta-1,4 24.9 1E+03 0.036 31.0 17.6 164 1826-1991 24-238 (737)
382 4fhn_B Nucleoporin NUP120; pro 21.2 6.4E+02 0.022 35.1 14.9 38 1954-1991 239-276 (1139)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.5e-40 Score=394.92 Aligned_cols=301 Identities=51% Similarity=0.980 Sum_probs=279.2
Q ss_pred CCcccccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCC
Q psy8748 1677 APKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDN 1756 (2004)
Q Consensus 1677 ~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG 1756 (2004)
..........++.+|.+.|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|+++++++|+.||
T Consensus 40 ~~~~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 119 (340)
T 1got_B 40 VGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp CCCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTC
T ss_pred cccccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCC
Confidence 33445667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
.|++|++.... ........+.+|.+.+.++.|.+++.+++++.||.|++||+.+++... .+.+|.+.|.+++|+|++
T Consensus 120 ~v~iw~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 120 ICSIYNLKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT-TFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp EEEEEETTTCS--BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTS
T ss_pred eEEEEECccCC--CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEE-EEcCCCCceEEEEECCCC
Confidence 99999997643 233566778899999999999998999999999999999999998774 457899999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
+++++|+.||.|++||++++..+..+.+|...|.+++|+|++++|++|+.||+|++||+++++....+....+...+.++
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999888877655555689999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1917 AVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1917 afSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
+|+|+|+++++|+.||.|++||+.+++....+.+|.+.|.+++|+|+|.+|++|+.||.|++||
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999996
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.1e-40 Score=426.02 Aligned_cols=395 Identities=17% Similarity=0.211 Sum_probs=303.9
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|...|++++|||+|++||+ |+.||+|+|||+.+. .......+.++...+ ..+.++|++
T Consensus 56 ~~h~~~v~~~~~spdg~~las-g~~d~~v~lWd~~~~-----------~~~~~~~~~~~~~~v--------~~v~fs~dg 115 (611)
T 1nr0_A 56 TEHSHQTTVAKTSPSGYYCAS-GDVHGNVRIWDTTQT-----------THILKTTIPVFSGPV--------KDISWDSES 115 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEE-EETTSEEEEEESSST-----------TCCEEEEEECSSSCE--------EEEEECTTS
T ss_pred cCCCCceEEEEECCCCcEEEE-EeCCCCEEEeECCCC-----------cceeeEeecccCCce--------EEEEECCCC
Confidence 468889999999999999999 999999999998650 011223444443332 234456655
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCC-EEEEE
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSR-HCVSG 1710 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~-~LASG 1710 (2004)
..-...... ..........+ .......+.+|.+.|++++|+|++. .|++|
T Consensus 116 ~~l~~~~~~------------------~~~~~~v~~wd-----------~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~ 166 (611)
T 1nr0_A 116 KRIAAVGEG------------------RERFGHVFLFD-----------TGTSNGNLTGQARAMNSVDFKPSRPFRIISG 166 (611)
T ss_dssp CEEEEEECC------------------SSCSEEEEETT-----------TCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred CEEEEEECC------------------CCceeEEEEee-----------CCCCcceecCCCCCceEEEECCCCCeEEEEE
Confidence 311100000 00000000000 1123456889999999999999987 69999
Q ss_pred eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEe-------cCcc
Q psy8748 1711 SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELL-------GYEG 1783 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~-------gh~~ 1783 (2004)
+.|++|++||..+++....+.+|...|.+++|+|++++|++|+.||.|++||+.++. ....+. +|.+
T Consensus 167 s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~------~~~~~~~~~~~~~~h~~ 240 (611)
T 1nr0_A 167 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT------KTGVFEDDSLKNVAHSG 240 (611)
T ss_dssp ETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC------EEEECBCTTSSSCSSSS
T ss_pred eCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc------EeeeeccccccccccCC
Confidence 999999999999999999999999999999999999999999999999999987643 233332 7899
Q ss_pred ceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEE------------------------------------------ee
Q psy8748 1784 FLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHE------------------------------------------VA 1820 (2004)
Q Consensus 1784 ~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~------------------------------------------il 1820 (2004)
.|.+++|+++ ..+++++.|+.|++||+.+++.... ..
T Consensus 241 ~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~ 320 (611)
T 1nr0_A 241 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVR 320 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEE
Confidence 9999999965 4689999999999999998765432 23
Q ss_pred ccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEE-e------------------------------------
Q psy8748 1821 QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF-F------------------------------------ 1863 (2004)
Q Consensus 1821 ~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl-~------------------------------------ 1863 (2004)
.+|...|++++|+|+|++|++++.||.|++||+.++.....+ .
T Consensus 321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~ 400 (611)
T 1nr0_A 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 400 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSS
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccc
Confidence 478889999999999999999999999999998765432221 0
Q ss_pred ---------------------------------------------cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCC
Q psy8748 1864 ---------------------------------------------GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRAD 1898 (2004)
Q Consensus 1864 ---------------------------------------------~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtg 1898 (2004)
.|...+.+++|+|+|+++++|+.||+|++||+.++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~ 480 (611)
T 1nr0_A 401 DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 480 (611)
T ss_dssp CTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETT
T ss_pred cccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCC
Confidence 12345778999999999999999999999999876
Q ss_pred ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEE--EccCCCCeEEEEEcCCCCEEEEEECCCe
Q psy8748 1899 QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK-TTHNGV--LSGHENRVTSISLSPNGMALVTSSWDQF 1975 (2004)
Q Consensus 1899 k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t-ge~l~t--L~gHs~~VtsLaFSPDg~~LaSgS~DGt 1975 (2004)
....... ..|...|++++|+|+|++|++++.|++|++||+.+ ++.... +.+|...|.+++|+|||++|++|+.||+
T Consensus 481 ~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~ 559 (611)
T 1nr0_A 481 SVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 559 (611)
T ss_dssp EEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCc
Confidence 5422222 35668899999999999999999999999999987 665543 3459999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEEeecCC-CCccccc
Q psy8748 1976 VKVWQESNTIVWKVLKVYNLE-KKTIFCV 2003 (2004)
Q Consensus 1976 IrIWdlstg~l~k~Ik~~~~h-~~~VtsV 2003 (2004)
|++|++.++... .+.....| ...|+++
T Consensus 560 v~lW~~~~~~~~-~~~~~~~h~~~~v~~v 587 (611)
T 1nr0_A 560 VIVWNMNKPSDH-PIIIKGAHAMSSVNSV 587 (611)
T ss_dssp EEEEETTCTTSC-CEEETTSSTTSCEEEE
T ss_pred EEEEECCCcccc-cchhhccCcccCeeEE
Confidence 999999876421 12445677 6777765
No 3
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1e-38 Score=384.49 Aligned_cols=337 Identities=41% Similarity=0.733 Sum_probs=291.0
Q ss_pred HHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECC
Q psy8748 1643 ELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTW 1722 (2004)
Q Consensus 1643 ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~ 1722 (2004)
.++.+...+...+.+.+............................|.||.+.|++++|+|++++|++|+.||+|++||..
T Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~ 94 (354)
T 2pbi_B 15 SLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSF 94 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHTTTSCCCCCCCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccHHHhccCCccccccccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 34445555555555544444333333333333334445566778999999999999999999999999999999999999
Q ss_pred CCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeec
Q psy8748 1723 TGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSG 1801 (2004)
Q Consensus 1723 Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~ 1801 (2004)
+++....+..|...|.+++|+|++..+++|+.|+.+++|++..............+.+|...+.++.|.+++ .+++++.
T Consensus 95 ~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~ 174 (354)
T 2pbi_B 95 TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174 (354)
T ss_dssp TCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred CCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeC
Confidence 999999999999999999999999999999999999999997654333334456677899999999999655 6999999
Q ss_pred CCeEEEEECCCCceeEEeeccccCCeEEEEECC--CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCC
Q psy8748 1802 DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP--DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL 1879 (2004)
Q Consensus 1802 DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP--dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~ 1879 (2004)
||.|++||+++++.+.. +.+|...|.+++|+| ++++|++|+.||.|++||+++++++..+.+|...|.+++|+|++.
T Consensus 175 D~~v~lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~ 253 (354)
T 2pbi_B 175 DGTCALWDVESGQLLQS-FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD 253 (354)
T ss_dssp TSEEEEEETTTCCEEEE-EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCcEEEEeCCCCeEEEE-EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC
Confidence 99999999999987744 468999999999988 578999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEE
Q psy8748 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSIS 1959 (2004)
Q Consensus 1880 ~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLa 1959 (2004)
+|++|+.||+|++||+++++....+........+.+++|+|+|+++++|+.||.|++||+.+++.+..+.+|.+.|++++
T Consensus 254 ~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~ 333 (354)
T 2pbi_B 254 AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLR 333 (354)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEE
Confidence 99999999999999999988877776555556789999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEE
Q psy8748 1960 LSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1960 FSPDg~~LaSgS~DGtIrIWd 1980 (2004)
|+|+|++|++|+.||+|++|+
T Consensus 334 ~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 334 VSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECTTSSCEEEEETTSEEEEEC
T ss_pred ECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999995
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.1e-38 Score=405.29 Aligned_cols=335 Identities=19% Similarity=0.290 Sum_probs=280.4
Q ss_pred CCCCCCCeEEEEEccCCC-EEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1551 PEPCKEQRNAVSFHACST-LLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk-~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
...|...|++++|+|+|. +||+ |+.|++|++||..+ ++
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s-~s~D~~v~lwd~~~-------------~~--------------------------- 181 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIIS-GSDDNTVAIFEGPP-------------FK--------------------------- 181 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEE-EETTSCEEEEETTT-------------BE---------------------------
T ss_pred ecCCCCCceEEEECCCCCeEEEE-EeCCCeEEEEECCC-------------Ce---------------------------
Confidence 456999999999999997 5998 99999999999755 11
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVS 1709 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LAS 1709 (2004)
....+.+|.+.|++++|+|+|++|++
T Consensus 182 ------------------------------------------------------~~~~l~~H~~~V~~v~fspdg~~las 207 (611)
T 1nr0_A 182 ------------------------------------------------------FKSTFGEHTKFVHSVRYNPDGSLFAS 207 (611)
T ss_dssp ------------------------------------------------------EEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ------------------------------------------------------EeeeeccccCceEEEEECCCCCEEEE
Confidence 12345679999999999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEee-------CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC------------
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIP-------LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG------------ 1770 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~-------~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~------------ 1770 (2004)
|+.||+|++||+.+++....+. +|.+.|.+++|+|++++|++++.|+.|++||+.+++...
T Consensus 208 ~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~ 287 (611)
T 1nr0_A 208 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ 287 (611)
T ss_dssp EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCE
T ss_pred EECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCcccee
Confidence 9999999999999999988884 799999999999999999999999999999998653211
Q ss_pred -------------------------cceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeec---
Q psy8748 1771 -------------------------AAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQ--- 1821 (2004)
Q Consensus 1771 -------------------------~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~--- 1821 (2004)
.......+.+|...+.+++|+++ ..+++++.||.|++||+.++........
T Consensus 288 ~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~ 367 (611)
T 1nr0_A 288 LGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA 367 (611)
T ss_dssp EEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS
T ss_pred EEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCc
Confidence 01133456689999999999865 5689999999999999987643211100
Q ss_pred ------------------------------------------------------------------------------cc
Q psy8748 1822 ------------------------------------------------------------------------------AH 1823 (2004)
Q Consensus 1822 ------------------------------------------------------------------------------~h 1823 (2004)
.|
T Consensus 368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~ 447 (611)
T 1nr0_A 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 447 (611)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence 12
Q ss_pred cCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE--EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC-Cce
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC--VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA-DQQ 1900 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~--I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt-gk~ 1900 (2004)
...+.+++|+|+|+++++|+.||.|++||+..+.. ... .+|...|.+++|+|+|++|++++.|++|++||+.+ ++.
T Consensus 448 ~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 448 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred CCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCce
Confidence 34578899999999999999999999999987653 233 68999999999999999999999999999999987 444
Q ss_pred eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-ee-EEEccC-CCCeEEEEEcCCCCEEEEEECCCeEE
Q psy8748 1901 IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT-HN-GVLSGH-ENRVTSISLSPNGMALVTSSWDQFVK 1977 (2004)
Q Consensus 1901 i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge-~l-~tL~gH-s~~VtsLaFSPDg~~LaSgS~DGtIr 1977 (2004)
........|...|.+++|+|+|++|++|+.||+|++||+.++. .. ..+.+| .+.|.+++|+|++. |++|+.||+|+
T Consensus 527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~ 605 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIK 605 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEE
T ss_pred eeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEE
Confidence 3321223477899999999999999999999999999998765 33 567789 89999999999998 99999999999
Q ss_pred EEECC
Q psy8748 1978 VWQES 1982 (2004)
Q Consensus 1978 IWdls 1982 (2004)
+|++.
T Consensus 606 lW~~~ 610 (611)
T 1nr0_A 606 FWNVP 610 (611)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99973
No 5
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-38 Score=375.75 Aligned_cols=285 Identities=17% Similarity=0.264 Sum_probs=256.4
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
..+|.+.|++++|+|++++|++|+.||.|++|| .+++....+..|...|.+++|+|+++++++++.||.|++|++.++
T Consensus 104 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~- 181 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG- 181 (425)
T ss_dssp ----CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT-
T ss_pred ccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC-
Confidence 356889999999999999999999999999999 788899999999999999999999999999999999999999754
Q ss_pred CCCcceEEEEEecCccc---------------eeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEE
Q psy8748 1768 STGAAKVIRELLGYEGF---------------LSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~---------------Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf 1832 (2004)
.....+..+... +.++.|.+++.+++++.+|.|++||+.+++.... ...|...|.+++|
T Consensus 182 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~-~~~~~~~i~~~~~ 255 (425)
T 1r5m_A 182 -----TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGK-LIGHHGPISVLEF 255 (425)
T ss_dssp -----EEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEE-ECCCSSCEEEEEE
T ss_pred -----cEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeee-eccCCCceEEEEE
Confidence 344455555554 8899999999999999999999999999877644 4688999999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1833 SPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1833 SPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
+|+++++++++.||.|++||+++++.+..+..|...|.+++|+|++ ++++++.||.|++||+++++.+..+. .+...
T Consensus 256 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~ 332 (425)
T 1r5m_A 256 NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI--VDGVP 332 (425)
T ss_dssp ETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE--CTTCC
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc--cCCcc
Confidence 9999999999999999999999999889998999999999999999 99999999999999999998887774 45578
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--------------------eeEEEccCCC--CeEEEEEcCCCCEEEEE
Q psy8748 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT--------------------HNGVLSGHEN--RVTSISLSPNGMALVTS 1970 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSsDGsIrIWDL~tge--------------------~l~tL~gHs~--~VtsLaFSPDg~~LaSg 1970 (2004)
+.+++|+|++++|++|+.||.|++||+.+++ .+..+.+|.. .|++++|+|++++|+++
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence 9999999999999999999999999998888 8889999976 99999999999999999
Q ss_pred ECCCeEEEEECCC
Q psy8748 1971 SWDQFVKVWQESN 1983 (2004)
Q Consensus 1971 S~DGtIrIWdlst 1983 (2004)
+.||.|++|++++
T Consensus 413 ~~dg~i~iw~~~g 425 (425)
T 1r5m_A 413 YSLQEGSVVAIPG 425 (425)
T ss_dssp ESSSCCEEEECCC
T ss_pred ecCceEEEEeecC
Confidence 9999999999863
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.9e-37 Score=391.53 Aligned_cols=359 Identities=26% Similarity=0.428 Sum_probs=297.2
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
..|...|++++|+|+|++|++ |+.||+|++||... +....+.++...+.. +.+.|++
T Consensus 218 ~~~~~~v~~~~~s~dg~~l~~-~~~d~~i~~w~~~~--------------~~~~~~~~~~~~v~~--------v~~~~d~ 274 (577)
T 2ymu_A 218 TGHSSSVRGVAFSPDGQTIAS-ASDDKTVKLWNRNG--------------QLLQTLTGHSSSVNG--------VAFRPDG 274 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEE-EETTSCEEEECTTS--------------CEEEEECCCSSCEEE--------EEECTTS
T ss_pred ecCCCCEEEEEECCCCCEEEE-EeCCCEEEEEeCCC--------------CEEEEEecCCCCEEE--------EEEcCCC
Confidence 347889999999999999999 99999999999644 344555555443332 2234443
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
..-... ..+. .-............+.+|.+.|++++|+|+++++++++
T Consensus 275 ~~l~~~-----------------------------~~d~---~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~ 322 (577)
T 2ymu_A 275 QTIASA-----------------------------SDDK---TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 322 (577)
T ss_dssp SEEEEE-----------------------------ETTS---CEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CEEEEE-----------------------------eCCC---EEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEe
Confidence 210000 0000 00000112234567889999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.||.|++||.. +..+..+..|...|.+++|+|+++++++|+.||.|++|+.. ......+.+|...+.+++|+
T Consensus 323 ~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-------~~~~~~~~~~~~~v~~~~~s 394 (577)
T 2ymu_A 323 DDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFS 394 (577)
T ss_dssp TTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-------CCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-------CCEEEEecCCCCCeEEEEEC
Confidence 99999999964 55667788999999999999999999999999999999964 24567788899999999998
Q ss_pred CC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeE
Q psy8748 1792 DD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVN 1870 (2004)
Q Consensus 1792 dd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~It 1870 (2004)
++ ..+++++.|+.|++||.. ++.. ....+|...|++++|+|+++++++++.||.|++||. +++.+..+.+|...|.
T Consensus 395 ~dg~~l~~~~~d~~v~~~~~~-~~~~-~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~ 471 (577)
T 2ymu_A 395 PDGQTIASASDDKTVKLWNRN-GQLL-QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVR 471 (577)
T ss_dssp TTSSCEEEEETTSEEEEECTT-CCEE-EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEE
T ss_pred CCCCEEEEEeCCCEEEEEeCC-CCEE-EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEE
Confidence 65 568899999999999964 4444 445689999999999999999999999999999996 5677888999999999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc
Q psy8748 1871 SVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG 1950 (2004)
Q Consensus 1871 sIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g 1950 (2004)
+++|+|+++++++++.|+.|++||. +++.+..+. .|...|++++|+|+|++|++|+.||.|++||. +++++..+.+
T Consensus 472 ~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~ 547 (577)
T 2ymu_A 472 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 547 (577)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC
Confidence 9999999999999999999999995 577777774 56688999999999999999999999999995 7889999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1951 HENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1951 Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
|.+.|++++|+|||++|+|++.||+|++||
T Consensus 548 h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 548 HSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999999999999999997
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.4e-38 Score=385.53 Aligned_cols=290 Identities=26% Similarity=0.426 Sum_probs=270.0
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
....+.+|.++|++++|+|+++++++|+.||+|++||+.+++....+.+|.+.|.+++|+|++++|++|+.||.|++||+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
.+. .....+.+|...|.++.|.++ ..+++|+.||.|++||+.++..+.. +.+|...|.++.+++++.++++|
T Consensus 180 ~~~------~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~-~~~h~~~v~~~~~~~~g~~l~s~ 252 (410)
T 1vyh_C 180 QGF------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-FTGHREWVRMVRPNQDGTLIASC 252 (410)
T ss_dssp TSS------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEECTTSSEEEEE
T ss_pred CCC------ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE-EeCCCccEEEEEECCCCCEEEEE
Confidence 753 466778899999999999965 5699999999999999999988744 46899999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC--------------------CCEEEEEECCCeEEEEEccCCceeE
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPS--------------------GLAFATGSEDKTARLFDIRADQQIA 1902 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPd--------------------g~~LaSgS~DGtIrIWDLrtgk~i~ 1902 (2004)
+.||.|++||+++++....+.+|...|.+++|+|+ |.++++|+.||.|++||++++..+.
T Consensus 253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~ 332 (410)
T 1vyh_C 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332 (410)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 99999999999999999999999999999999996 6789999999999999999999888
Q ss_pred EEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1903 TYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
.+. +|...|.+++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||+|++|++.
T Consensus 333 ~~~--~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 333 TLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEE--CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEE--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 874 566789999999999999999999999999999999999999999999999999999999999999999999863
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.4e-38 Score=382.60 Aligned_cols=305 Identities=41% Similarity=0.758 Sum_probs=270.6
Q ss_pred cccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1681 KLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1681 k~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
...+.++|.||.+.|++++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+|+++++++|+.|+.|++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCC-CCcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEe----eccccCCeEEEEEC
Q psy8748 1761 YDLNNRDS-TGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEV----AQAHIGDVVSISLS 1833 (2004)
Q Consensus 1761 WDl~t~~~-~~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~i----l~~h~~~ItsLafS 1833 (2004)
|++..... .........+.+|.+.+.++.|.++ ..+++|+.|+.|++||+.+++.+..+ ..+|...|.+++|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 99975321 1122334567789999999999864 46999999999999999999877544 15788999999998
Q ss_pred C-CCCEEEEEECCCeEEEEECC-CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCC--
Q psy8748 1834 P-DGQYFVTGSVDKSCKLWDFR-EKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNK-- 1909 (2004)
Q Consensus 1834 P-dg~~LaSGS~DGsIrIWDlr-s~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~-- 1909 (2004)
+ +++++++|+.||.|++||++ .+..+..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+.....
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 7 88999999999999999998 4577888999999999999999999999999999999999999998887754322
Q ss_pred ---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE----ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1910 ---NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVL----SGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1910 ---~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL----~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
...+++++|+|+|+++++|+.||.|++||+.+++....+ .+|.+.|++++|+|+|.+|++|+.||+|++|++.
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 234889999999999999999999999999999988877 6899999999999999999999999999999998
Q ss_pred CCe
Q psy8748 1983 NTI 1985 (2004)
Q Consensus 1983 tg~ 1985 (2004)
+.+
T Consensus 375 ~~~ 377 (380)
T 3iz6_a 375 GHR 377 (380)
T ss_dssp SSS
T ss_pred CCc
Confidence 753
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.1e-37 Score=386.35 Aligned_cols=371 Identities=26% Similarity=0.433 Sum_probs=309.0
Q ss_pred CCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCc
Q psy8748 1553 PCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSS 1632 (2004)
Q Consensus 1553 ~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgS 1632 (2004)
.|...|.++.|+|+|++|++ |+.||+|++||... +....+.++...+.. +.+.+++.
T Consensus 178 ~~~~~v~~~~~~~~~~~l~~-~~~d~~v~~w~~~~--------------~~~~~~~~~~~~v~~--------~~~s~dg~ 234 (577)
T 2ymu_A 178 GHSSSVWGVAFSPDGQTIAS-ASDDKTVKLWNRNG--------------QLLQTLTGHSSSVRG--------VAFSPDGQ 234 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEE-EETTSEEEEECTTS--------------CEEEEEECCSSCEEE--------EEECTTSS
T ss_pred CCCcceeeeeecCCCCEEEE-EcCCCEEEEEeCCC--------------cEEEEEecCCCCEEE--------EEECCCCC
Confidence 47778999999999999999 99999999999644 344555554443322 23344431
Q ss_pred c------hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCE
Q psy8748 1633 I------NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRH 1706 (2004)
Q Consensus 1633 i------di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~ 1706 (2004)
. +..+..| ....+....+.+|...|++++|+|++++
T Consensus 235 ~l~~~~~d~~i~~w--------------------------------------~~~~~~~~~~~~~~~~v~~v~~~~d~~~ 276 (577)
T 2ymu_A 235 TIASASDDKTVKLW--------------------------------------NRNGQLLQTLTGHSSSVNGVAFRPDGQT 276 (577)
T ss_dssp CEEEEETTSCEEEE--------------------------------------CTTSCEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEEeCCCEEEEE--------------------------------------eCCCCEEEEEecCCCCEEEEEEcCCCCE
Confidence 1 0000011 1122345678899999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcccee
Q psy8748 1707 CVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vs 1786 (2004)
+++++.|+.|++||. +++....+.+|...|.+++|+|+++.+++++.||.|++|+... .....+.+|...+.
T Consensus 277 l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-------~~~~~~~~~~~~v~ 348 (577)
T 2ymu_A 277 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-------QHLQTLTGHSSSVW 348 (577)
T ss_dssp EEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-------CEEEEECCCSSCEE
T ss_pred EEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-------CeeEEEeCCCCCEE
Confidence 999999999999995 6778888999999999999999999999999999999999854 34566788999999
Q ss_pred eeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecC
Q psy8748 1787 SCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH 1865 (2004)
Q Consensus 1787 svafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h 1865 (2004)
+++|+++ ..+++++.||.|++||.. ++.+ ....+|...|.+++|+|++++|++++.||.|++||. +++.+..+.+|
T Consensus 349 ~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~-~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~ 425 (577)
T 2ymu_A 349 GVAFSPDGQTIASASDDKTVKLWNRN-GQLL-QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH 425 (577)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETT-CCEE-EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEcCC-CCEE-EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCC
Confidence 9999865 568889999999999964 4544 345689999999999999999999999999999995 56778889999
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1866 EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
...|.+++|+|+++++++++.|+.|++||.. ++.+..+. .+...+.+++|+|+|++|++++.||.|++||. +++.+
T Consensus 426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~--~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~ 501 (577)
T 2ymu_A 426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL 501 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEE--CCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEE
T ss_pred CCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEE
Confidence 9999999999999999999999999999964 56666663 56688999999999999999999999999995 78899
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1946 GVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1946 ~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
..+.+|...|++++|+|+|++|++++.||.|++||..+ + .++.+..|.+.|+++
T Consensus 502 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~-~---~~~~~~~h~~~v~~~ 555 (577)
T 2ymu_A 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q---LLQTLTGHSSSVWGV 555 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS-C---EEEEEECCSSCEEEE
T ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC-C---EEEEEcCCCCCEEEE
Confidence 99999999999999999999999999999999999754 3 355567888888775
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=360.33 Aligned_cols=289 Identities=23% Similarity=0.338 Sum_probs=262.2
Q ss_pred cccccccccceeEEEEeCC----CCEEEEEeCCCeEEEEECCCCce--EEEeeCCCCceEEEEEecCCCEEEEeecCCeE
Q psy8748 1685 KKSLKGHINKVNSVHYSGD----SRHCVSGSLDGKLIIWDTWTGNK--TQVIPLRSAWVMSVAFAQSGNFVACGGMDNMC 1758 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPD----G~~LASGS~DGtIrVWDl~Tgk~--l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtI 1758 (2004)
.+.+.+|.+.|++++|+|+ +.+|++|+.||+|+|||+.+++. ...+.+|...|.+++|++++..+++++.||.|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 4567899999999999974 66999999999999999887754 44678999999999999999999999999999
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~ 1837 (2004)
++||+.++ +....+..+...+.++.|+++ ..+++++.+|.|++||+++++.... ...+...|.+++|+|+++
T Consensus 105 ~lWd~~~~------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~-~~~~~~~v~~~~~spdg~ 177 (321)
T 3ow8_A 105 RLWDLENG------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS-LDTRGKFILSIAYSPDGK 177 (321)
T ss_dssp EEEETTTT------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE-EECSSSCEEEEEECTTSS
T ss_pred EEEECCCC------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE-ecCCCceEEEEEECCCCC
Confidence 99999754 456677788888899999865 4688899999999999999887744 456788899999999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEE
Q psy8748 1838 YFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1838 ~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLa 1917 (2004)
+|++|+.||.|++||+++++.+..+.+|..+|.+++|+|++++|++|+.||.|++||+++++....+ ..|...|.+++
T Consensus 178 ~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~ 255 (321)
T 3ow8_A 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL--SGHASWVLNVA 255 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE--CCCSSCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE--cCCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999888777 45678899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1918 VSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1918 fSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
|+|+|++|++|+.||+|++||+.+++++..+.+|.+.|.+++|+|++.+|++++.||.|++||..
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999963
No 11
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.8e-36 Score=353.36 Aligned_cols=294 Identities=20% Similarity=0.332 Sum_probs=263.2
Q ss_pred ccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1682 LMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1682 ~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
....+++.+|.+.|++++|+|++++|++|+.||+|++||+.++..+..+..|..+|.+++|+|+++++++|+.||.|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC-CCCEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP-DGQYF 1839 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP-dg~~L 1839 (2004)
|+.++ .....+.+|...|.+++|++++ .+++|+.||.|++||++++......+.+|...|.+++|+| ++..|
T Consensus 83 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 83 NYNTG------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp ETTTC------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred ECCCC------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEE
Confidence 99764 4567788999999999999654 6889999999999999988777677789999999999999 67899
Q ss_pred EEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeC--CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1840 VTGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVCFHP--SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs~k~I~tl~-~h~s~ItsIafSP--dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
++|+.||.|++||++++.....+. +|...+..+.|+| ++.++++|+.||+|++||+++++++..+. .|...|.++
T Consensus 157 ~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~--~h~~~v~~~ 234 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFA 234 (304)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC--CCCCCEEEE
Confidence 999999999999998876655544 5667899999987 77899999999999999999999888874 566889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCC
Q psy8748 1917 AVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM--ALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1917 afSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~--~LaSgS~DGtIrIWdlstg 1984 (2004)
+|+|++++|++|+.||+|++||+.+++....+..|...+.+++|+|++. ++++|+.|| +.+|++.+.
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence 9999999999999999999999999999999999999999999999875 577777555 788888764
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-36 Score=369.45 Aligned_cols=286 Identities=24% Similarity=0.393 Sum_probs=259.8
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..+|+++|++++|+|+|.+||+ |+.||+|+|||+.+ ++
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s-~s~Dg~i~vwd~~~-------------~~---------------------------- 141 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVS-ASEDATIKVWDYET-------------GD---------------------------- 141 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEE-EESSSCEEEEETTT-------------CC----------------------------
T ss_pred ecccCCcEEEEEEcCCCCEEEE-EeCCCeEEEEECCC-------------Cc----------------------------
Confidence 4569999999999999999999 99999999999877 11
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
....+.+|.+.|++++|+|++++|++|
T Consensus 142 -----------------------------------------------------~~~~l~~h~~~V~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 142 -----------------------------------------------------FERTLKGHTDSVQDISFDHSGKLLASC 168 (410)
T ss_dssp -----------------------------------------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred -----------------------------------------------------EEEEEeccCCcEEEEEEcCCCCEEEEE
Confidence 123466899999999999999999999
Q ss_pred eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE
Q psy8748 1711 SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf 1790 (2004)
+.||+|++||+.+++.+..+.+|...|.+++|+|+++++++|+.||.|++||+.++ .....+.+|...+.++.+
T Consensus 169 s~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~------~~~~~~~~h~~~v~~~~~ 242 (410)
T 1vyh_C 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG------YCVKTFTGHREWVRMVRP 242 (410)
T ss_dssp ETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEE
T ss_pred eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------cEEEEEeCCCccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999764 456778899999999999
Q ss_pred eCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC--------------------CCEEEEEECCCeEE
Q psy8748 1791 IDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD--------------------GQYFVTGSVDKSCK 1849 (2004)
Q Consensus 1791 sdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd--------------------g~~LaSGS~DGsIr 1849 (2004)
.++ ..+++|+.||.|++||+.+++... .+.+|...|.+++|+|+ +.++++|+.||.|+
T Consensus 243 ~~~g~~l~s~s~D~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~ 321 (410)
T 1vyh_C 243 NQDGTLIASCSNDQTVRVWVVATKECKA-ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321 (410)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCceee-EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence 865 468899999999999999988774 45789999999999996 67899999999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1850 LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1850 IWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
+||++++.++..+.+|...|.+++|+|+|++|++|+.||.|++||+.+++.+..+. .|...|++++|+|++.+|++|+
T Consensus 322 iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~sgs 399 (410)
T 1vyh_C 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVVTGS 399 (410)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--CCSSCEEEEEECSSSSCEEEEE
T ss_pred EEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCCcEEEEEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999888874 5667899999999999999999
Q ss_pred CCCeEEEEECC
Q psy8748 1930 DDNNVHVWDLL 1940 (2004)
Q Consensus 1930 sDGsIrIWDL~ 1940 (2004)
.||+|++|+++
T Consensus 400 ~D~~i~vW~~r 410 (410)
T 1vyh_C 400 VDQTVKVWECR 410 (410)
T ss_dssp TTSEEEEEC--
T ss_pred CCCcEEEEeCC
Confidence 99999999863
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.8e-35 Score=343.14 Aligned_cols=294 Identities=25% Similarity=0.472 Sum_probs=262.6
Q ss_pred ccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1682 LMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1682 ~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
+.....+.+|.+.|++++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++++|++|+.||.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La 1840 (2004)
|++++ .....+.+|...+.++.|.++ ..+++|+.||.|++||+++++... .+..|...|.+++|+|++++++
T Consensus 93 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 93 DVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK-TLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp ETTTC------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEEE
T ss_pred ECCCC------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE-EecCCCCcEEEEEEcCCCCEEE
Confidence 99754 456778889999999999865 568899999999999999988774 4467889999999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEE-E
Q psy8748 1841 TGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCA-V 1918 (2004)
Q Consensus 1841 SGS~DGsIrIWDlrs~k~I~tl~-~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLa-f 1918 (2004)
+|+.||.|++||+++++.+..+. .+...+.+++|+|+++++++++.||.|++||+++++....+..+.......... .
T Consensus 166 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred EEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 99999999999999998877764 456789999999999999999999999999999999888875443332223333 4
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECC
Q psy8748 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSS--WDQFVKVWQES 1982 (2004)
Q Consensus 1919 SPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS--~DGtIrIWdls 1982 (2004)
.+++.++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++.++++++ .||.|++|+.+
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred eCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 46889999999999999999999999999999999999999999999999997 69999999975
No 14
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.6e-35 Score=370.39 Aligned_cols=399 Identities=15% Similarity=0.188 Sum_probs=302.2
Q ss_pred CCCCCCC-eEEEEEcc--CCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCcccccccc
Q psy8748 1551 PEPCKEQ-RNAVSFHA--CSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMM 1627 (2004)
Q Consensus 1551 ~e~Hk~~-VtsVsFSP--dGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~ 1627 (2004)
...|... |++++|+| +|++||+ |+.||+|++||+.+. .............+.++...+ ..+.+
T Consensus 59 ~~~h~~~~v~~~~~sp~~~~~~l~s-~~~dg~v~vw~~~~~-----~~~~~~~~~~~~~~~~~~~~v--------~~~~~ 124 (615)
T 1pgu_A 59 FTGHGSSVVTTVKFSPIKGSQYLCS-GDESGKVIVWGWTFD-----KESNSVEVNVKSEFQVLAGPI--------SDISW 124 (615)
T ss_dssp ECTTTTSCEEEEEECSSTTCCEEEE-EETTSEEEEEEEEEE-----GGGTEEEEEEEEEEECCSSCE--------EEEEE
T ss_pred EecCCCceEEEEEECcCCCCCEEEE-ecCCCEEEEEeCCCC-----cccccccccccchhhcccccE--------EEEEE
Confidence 3458889 99999999 9999999 999999999999750 000000124444554433332 23344
Q ss_pred CCCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCC-E
Q psy8748 1628 KPTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSR-H 1706 (2004)
Q Consensus 1628 spdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~-~ 1706 (2004)
++++..-...... ......... .. .......+.+|.+.|++++|+|+++ .
T Consensus 125 s~~~~~l~~~~~~------------------~~~~~~v~~-------~d----~~~~~~~~~~~~~~v~~~~~~~~~~~~ 175 (615)
T 1pgu_A 125 DFEGRRLCVVGEG------------------RDNFGVFIS-------WD----SGNSLGEVSGHSQRINACHLKQSRPMR 175 (615)
T ss_dssp CTTSSEEEEEECC------------------SSCSEEEEE-------TT----TCCEEEECCSCSSCEEEEEECSSSSCE
T ss_pred eCCCCEEEEeccC------------------CCCccEEEE-------EE----CCCcceeeecCCccEEEEEECCCCCcE
Confidence 5554211100000 000000000 00 1224567889999999999999998 8
Q ss_pred EEEEeCCCeEEEEECCCCceEEEeeCCCC---ceEEEEEecC-CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEE-e--
Q psy8748 1707 CVSGSLDGKLIIWDTWTGNKTQVIPLRSA---WVMSVAFAQS-GNFVACGGMDNMCTVYDLNNRDSTGAAKVIREL-L-- 1779 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~---~ItsLafSPd-g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl-~-- 1779 (2004)
+++++.||.|++||+.+++....+..|.. .|.+++|+|+ ++++++++.||.|++||+.++ +....+ .
T Consensus 176 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~ 249 (615)
T 1pgu_A 176 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG------EFLKYIEDDQ 249 (615)
T ss_dssp EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC------CEEEECCBTT
T ss_pred EEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC------CEeEEecccc
Confidence 99999999999999999999999999999 9999999999 999999999999999999754 344555 4
Q ss_pred -cCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeecc---ccCCeEEEEECCCCCEEEEEECCCeEEEEECCC
Q psy8748 1780 -GYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA---HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855 (2004)
Q Consensus 1780 -gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~---h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs 1855 (2004)
+|...+.++.|.++..+++++.||.|++||+.+++....+... +...+.++.|. +++++++++.||.|++||+.+
T Consensus 250 ~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 250 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred cccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence 7899999999995567999999999999999998877555322 24678888886 899999999999999999998
Q ss_pred CeEEEEEecCCCCeEEEEEeCC---------------------------------CCEEEEEEC----------------
Q psy8748 1856 KKCVQTFFGHEADVNSVCFHPS---------------------------------GLAFATGSE---------------- 1886 (2004)
Q Consensus 1856 ~k~I~tl~~h~s~ItsIafSPd---------------------------------g~~LaSgS~---------------- 1886 (2004)
++.+..+.+|...|.+++| |+ +..+++++.
T Consensus 329 ~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~ 407 (615)
T 1pgu_A 329 DEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGS 407 (615)
T ss_dssp EEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSS
T ss_pred CcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccC
Confidence 8888887777666665555 33 334444444
Q ss_pred ----------------------------------------------------------CCeEEEEEccCCceeEEEcCCC
Q psy8748 1887 ----------------------------------------------------------DKTARLFDIRADQQIATYLPPN 1908 (2004)
Q Consensus 1887 ----------------------------------------------------------DGtIrIWDLrtgk~i~t~~~~~ 1908 (2004)
||.|++||+.+++... .....
T Consensus 408 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~ 486 (615)
T 1pgu_A 408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTP 486 (615)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-ECSSC
T ss_pred CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc-cccCC
Confidence 4444444444433322 33456
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc-CCCCeEEEEEcC----------CCCEEEEEECCCeEE
Q psy8748 1909 KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG-HENRVTSISLSP----------NGMALVTSSWDQFVK 1977 (2004)
Q Consensus 1909 ~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g-Hs~~VtsLaFSP----------Dg~~LaSgS~DGtIr 1977 (2004)
+...+++++|+|+|++|++|+.||.|++||+.+++.+..+.+ |...|++++|+| ++++|++|+.||.|+
T Consensus 487 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~ 566 (615)
T 1pgu_A 487 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 566 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEE
Confidence 678899999999999999999999999999999999999888 999999999999 999999999999999
Q ss_pred EEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1978 VWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1978 IWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
+|++.++. +.+..+..|.+.|+++
T Consensus 567 iw~~~~~~--~~~~~~~~h~~~v~~l 590 (615)
T 1pgu_A 567 IYSVKRPM--KIIKALNAHKDGVNNL 590 (615)
T ss_dssp EEESSCTT--CCEEETTSSTTCEEEE
T ss_pred EEECCCCc--eechhhhcCccceEEE
Confidence 99999873 3355677888888775
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=349.90 Aligned_cols=286 Identities=24% Similarity=0.357 Sum_probs=256.3
Q ss_pred CCCCCCeEEEEEccC----CCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCcccccccc
Q psy8748 1552 EPCKEQRNAVSFHAC----STLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMM 1627 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPd----Gk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~ 1627 (2004)
..|.+.|++++|+|+ +++||| |+.||+|+||++.. .+.
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~t-gs~D~~v~vW~~~~-------------~~~------------------------ 70 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVT-GSLDDLVKVWKWRD-------------ERL------------------------ 70 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEE-EETTSCEEEEEEET-------------TEE------------------------
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEE-EcCCCCEEEEECCC-------------CCe------------------------
Confidence 469999999999985 679999 99999999999866 110
Q ss_pred CCCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEE
Q psy8748 1628 KPTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHC 1707 (2004)
Q Consensus 1628 spdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~L 1707 (2004)
.....+.+|...|.+++|++++.++
T Consensus 71 -------------------------------------------------------~~~~~l~gh~~~v~~~~~~~~~~~l 95 (321)
T 3ow8_A 71 -------------------------------------------------------DLQWSLEGHQLGVVSVDISHTLPIA 95 (321)
T ss_dssp -------------------------------------------------------EEEEEECCCSSCEEEEEECSSSSEE
T ss_pred -------------------------------------------------------eeeeeeccCCCCEEEEEECCCCCEE
Confidence 0122466899999999999999999
Q ss_pred EEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceee
Q psy8748 1708 VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS 1787 (2004)
Q Consensus 1708 ASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vss 1787 (2004)
++|+.||+|++||+.+++.+..+..|...+.+++|+|+++++++|+.||.|++|+++.+ .....+..+...+.+
T Consensus 96 ~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~------~~~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG------KKEYSLDTRGKFILS 169 (321)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC------SEEEEEECSSSCEEE
T ss_pred EEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC------ceeEEecCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999764 345566778889999
Q ss_pred eEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC
Q psy8748 1788 CRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE 1866 (2004)
Q Consensus 1788 vafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~ 1866 (2004)
++|+++ ..+++|+.||.|++||+.+++.+.. +.+|...|.+++|+|++++|++|+.||.|++||+++++....+.+|.
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 248 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHT-LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence 999865 4688999999999999999987744 57899999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1867 ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1867 s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
..|.+++|+|++.+|++++.||+|++||+++++++..+. .|...|.+++|+|+|++|++++.||.|++||.
T Consensus 249 ~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF--DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc--CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999999999999999999999999999988884 56688999999999999999999999999996
No 16
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.6e-35 Score=342.25 Aligned_cols=287 Identities=22% Similarity=0.340 Sum_probs=254.1
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
..|.+.|++++|||+|++||+ |+.||+|++||+.+ +..
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s-~~~dg~v~lWd~~~-------------~~~---------------------------- 47 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLT-TLYSGRVELWNYET-------------QVE---------------------------- 47 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEE-EETTSEEEEEETTT-------------TEE----------------------------
T ss_pred cCCCCceEEEEECCCCCEEEE-EcCCCcEEEEECCC-------------Cce----------------------------
Confidence 358889999999999999999 99999999999877 221
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
...+.+|..+|.+++|+|++++|++|+
T Consensus 48 -----------------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~s~s 74 (304)
T 2ynn_A 48 -----------------------------------------------------VRSIQVTETPVRAGKFIARKNWIIVGS 74 (304)
T ss_dssp -----------------------------------------------------EEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred -----------------------------------------------------eEEeeccCCcEEEEEEeCCCCEEEEEC
Confidence 223456888999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.||+|++||+.+++.+..+.+|...|.+++|+|+++++++|+.||.|++||++++ ......+.+|...+.+++|+
T Consensus 75 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-----~~~~~~~~~h~~~v~~v~~~ 149 (304)
T 2ynn_A 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-----WALEQTFEGHEHFVMCVAFN 149 (304)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT-----TEEEEEECCCCSCEEEEEEC
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC-----cchhhhhcccCCcEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999753 24556788999999999998
Q ss_pred C--CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC--CCCEEEEEECCCeEEEEECCCCeEEEEEecCCC
Q psy8748 1792 D--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP--DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA 1867 (2004)
Q Consensus 1792 d--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP--dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s 1867 (2004)
+ +..+++|+.||.|++||+.++........++...+..+.|+| ++.++++|+.||.|++||+++++++..+.+|..
T Consensus 150 p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~ 229 (304)
T 2ynn_A 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229 (304)
T ss_dssp TTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC
Confidence 6 356999999999999999988777666667778899999987 778999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCC
Q psy8748 1868 DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR--YIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1868 ~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~--~LaSGSsDGsIrIWDL~t 1941 (2004)
.|.+++|+|++.+|++|+.||+|++||+.+++....+. .+...+.+++++|++. ++++|+.|| +.+|++.+
T Consensus 230 ~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN--VGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC--CSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc--CCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 99999999999999999999999999999999988884 4557899999999875 577776555 77887754
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-34 Score=338.20 Aligned_cols=293 Identities=23% Similarity=0.385 Sum_probs=254.9
Q ss_pred cccccccccccceeEEEEeCC-CCEEEEEeCCCeEEEEECCCCc-----eEEEeeCCCCceEEEEEecCCCEEEEeecCC
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGD-SRHCVSGSLDGKLIIWDTWTGN-----KTQVIPLRSAWVMSVAFAQSGNFVACGGMDN 1756 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPD-G~~LASGS~DGtIrVWDl~Tgk-----~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG 1756 (2004)
....+|+||++.|++|+|+|+ +++|+|||.||+|+|||+.+++ ....+.+|...|.+++|+|+++++++|+.||
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 345679999999999999997 6899999999999999987653 4567889999999999999999999999999
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD 1835 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd 1835 (2004)
.|++|+.... ........+...+....+.+ +..+++++.||.+++||............+|...+.+++|+++
T Consensus 109 ~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 109 TLRLWDLTTG------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp EEEEEETTTT------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred cceEEeeccc------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 9999998753 44455556666777777764 5568999999999999998877766667789999999999886
Q ss_pred C--CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCe
Q psy8748 1836 G--QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGF 1913 (2004)
Q Consensus 1836 g--~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~I 1913 (2004)
+ .++++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.. ...+
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v 259 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG---GDII 259 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---SSCE
T ss_pred CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC---CceE
Confidence 4 5788999999999999999999999999999999999999999999999999999999999998887743 3579
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEc---------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1914 TSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS---------GHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1914 tsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~---------gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
.+++|+|++.++ +++.||.|++||++++..+..+. +|...|++++|+|+|++|++|+.||.|+|||+.+|
T Consensus 260 ~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 260 NALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred EeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 999999988755 45579999999999887776653 68899999999999999999999999999999987
Q ss_pred e
Q psy8748 1985 I 1985 (2004)
Q Consensus 1985 ~ 1985 (2004)
.
T Consensus 339 t 339 (340)
T 4aow_A 339 T 339 (340)
T ss_dssp -
T ss_pred C
Confidence 4
No 18
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.8e-35 Score=350.42 Aligned_cols=299 Identities=21% Similarity=0.281 Sum_probs=253.4
Q ss_pred ccccccccccc-ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE---EeeCCCCceEEEEEecCCCEEEEeecCCeE
Q psy8748 1683 MPKKSLKGHIN-KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQ---VIPLRSAWVMSVAFAQSGNFVACGGMDNMC 1758 (2004)
Q Consensus 1683 ~pi~sL~GHt~-~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~---ti~~Ht~~ItsLafSPdg~~LaSGS~DGtI 1758 (2004)
.....+.+|.+ .|++++|+|+|++||+|+.||+|+|||+.++.... ...+|...|.+++|+|++++|++|+.||.|
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 45678889988 99999999999999999999999999998876432 236799999999999999999999999999
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCcee--EEeeccccCCeEEEEECCC
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRI--HEVAQAHIGDVVSISLSPD 1835 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i--~~il~~h~~~ItsLafSPd 1835 (2004)
++|++... .......+.+|...|.+++|+++ ..+++|+.||.|++||+.++... .....+|...|.+++|+|+
T Consensus 86 ~iw~~~~~----~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 161 (345)
T 3fm0_A 86 CIWKKNQD----DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS 161 (345)
T ss_dssp EEEEECCC-----EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred EEEEccCC----CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence 99998754 34566788899999999999965 56899999999999999876532 3446789999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc--------------
Q psy8748 1836 GQYFVTGSVDKSCKLWDFREKK--CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ-------------- 1899 (2004)
Q Consensus 1836 g~~LaSGS~DGsIrIWDlrs~k--~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk-------------- 1899 (2004)
+++|++|+.||.|++||.+.+. +...+.+|...|.+++|+|+|++|++|+.||+|++||.....
T Consensus 162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 9999999999999999998775 456788999999999999999999999999999999974321
Q ss_pred -eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---------eeEEEccCCCCeEEEEEcCCC-CEEE
Q psy8748 1900 -QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT---------HNGVLSGHENRVTSISLSPNG-MALV 1968 (2004)
Q Consensus 1900 -~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge---------~l~tL~gHs~~VtsLaFSPDg-~~La 1968 (2004)
++..+. ..|...|.+++|+|++..+++++.|+.|++|+...+. ......+|...|++++|+|++ .+|+
T Consensus 242 ~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la 320 (345)
T 3fm0_A 242 KCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLA 320 (345)
T ss_dssp EEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEE
T ss_pred ceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEE
Confidence 222222 2366789999999999999999999999999986542 112336899999999999987 5999
Q ss_pred EEECCCeEEEEECCCCeE
Q psy8748 1969 TSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1969 SgS~DGtIrIWdlstg~l 1986 (2004)
+|+.||+|++|++.+++.
T Consensus 321 S~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 321 SCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEETTSCEEEEEECC---
T ss_pred EcCCCCcEEEEEecCCCC
Confidence 999999999999998754
No 19
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.4e-35 Score=338.97 Aligned_cols=282 Identities=21% Similarity=0.325 Sum_probs=249.8
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCce---EEEee--CCCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK---TQVIP--LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~---l~ti~--~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
.+|.+.|++++|+|+++++++++ ||.|++||+.++.. ...+. .|...|.+++|+|+++++++++.||.|++|++
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 36999999999999999999999 99999999987753 33333 78999999999999999999999999999999
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
..+. ......+..|...+.++.|.++ ..+++++.||.|++||+++++.... ...|...|.+++|+|++++++++
T Consensus 127 ~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~ 201 (337)
T 1gxr_A 127 AAPT----PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ-FQGHTDGASCIDISNDGTKLWTG 201 (337)
T ss_dssp CCC------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCC----cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee-eecccCceEEEEECCCCCEEEEE
Confidence 8652 3356677788999999999865 5688999999999999999877644 46789999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
+.||.|++||+++++.+..+ .+...+.+++|+|+++++++++.||.|++||+++++... + ..+...+.+++|+|++
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~--~~~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L--HLHESCVLSLKFAYCG 277 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-E--CCCSSCEEEEEECTTS
T ss_pred ecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-E--cCCccceeEEEECCCC
Confidence 99999999999999887776 578889999999999999999999999999999877543 3 4566889999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
+++++++.||.|++||+.+++..... .|...|.+++|+|++++|++++.||.|++|++
T Consensus 278 ~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 278 KWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999999999999887554 58899999999999999999999999999996
No 20
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-34 Score=343.17 Aligned_cols=291 Identities=20% Similarity=0.340 Sum_probs=256.5
Q ss_pred ccccccccccccceeEEEEeCCC-CEEEEEeCCCeEEEEECCC-----CceEEEeeCCCCceEEEEEecCCCEEEEeecC
Q psy8748 1682 LMPKKSLKGHINKVNSVHYSGDS-RHCVSGSLDGKLIIWDTWT-----GNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD 1755 (2004)
Q Consensus 1682 ~~pi~sL~GHt~~VtsLaFSPDG-~~LASGS~DGtIrVWDl~T-----gk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D 1755 (2004)
+....+|.||.+.|++++|+|++ ++|++|+.||+|++||+.. +..+..+.+|...|.+++|+|+++++++|+.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 34566899999999999999965 8999999999999999864 34567789999999999999999999999999
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
|.|++||+.++ +....+.+|...|.++.|.++ ..+++|+.||.|++||++.. .+ ....+|...|.+++|+|
T Consensus 87 ~~v~~wd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~-~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 87 KTLRLWDVATG------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CL-ATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp SEEEEEETTTT------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EE-EEECCCSSCEEEEEECC
T ss_pred CEEEEEECCCC------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eE-EEEeccCCcEEEEEEcc
Confidence 99999999754 567788899999999999865 56899999999999999743 33 34568999999999998
Q ss_pred C------CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCC
Q psy8748 1835 D------GQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN 1908 (2004)
Q Consensus 1835 d------g~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~ 1908 (2004)
. +..+++++.||.|++||+++.+....+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..
T Consensus 159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-- 236 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-- 236 (319)
T ss_dssp C------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC--
T ss_pred CCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC--
Confidence 4 45899999999999999999999999999999999999999999999999999999999999998888743
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEc--------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1909 KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS--------GHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1909 ~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~--------gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
...+.+++|+|++.++++++.+ .+++|++..+.....+. .|...+.+++|+|||++|++|+.||.|++|+
T Consensus 237 -~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 237 -QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp -CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred -CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 3579999999999999998765 59999998877776664 3567899999999999999999999999999
Q ss_pred CCCC
Q psy8748 1981 ESNT 1984 (2004)
Q Consensus 1981 lstg 1984 (2004)
+.++
T Consensus 315 ~~t~ 318 (319)
T 3frx_A 315 VMTA 318 (319)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 8764
No 21
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=364.10 Aligned_cols=293 Identities=15% Similarity=0.190 Sum_probs=250.7
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC----CceEEEeeCCCCceEEEEEecC-CCEEEEeecCCeEEEEEcC
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT----GNKTQVIPLRSAWVMSVAFAQS-GNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T----gk~l~ti~~Ht~~ItsLafSPd-g~~LaSGS~DGtIrVWDl~ 1764 (2004)
+|...|++++|+|++++|++|+.||.|++||+.+ .+....+..|...|.+++|+|+ ++++++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 4788999999999999999999999999999987 4578888999999999999998 8999999999999999998
Q ss_pred CCCCCC---cceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEeeccc-----cCCeEEEEECC
Q psy8748 1765 NRDSTG---AAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQAH-----IGDVVSISLSP 1834 (2004)
Q Consensus 1765 t~~~~~---~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~il~~h-----~~~ItsLafSP 1834 (2004)
...... .........+|...+.++.|+++ ..+++++.||.|++||+++++....+.... ...|.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 764111 01112234578889999999965 568899999999999999988775553222 78899999999
Q ss_pred CC-CEEEEEECCC---eEEEEECCCC-eEEEEEe-cCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccCCceeEEEcCC
Q psy8748 1835 DG-QYFVTGSVDK---SCKLWDFREK-KCVQTFF-GHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRADQQIATYLPP 1907 (2004)
Q Consensus 1835 dg-~~LaSGS~DG---sIrIWDlrs~-k~I~tl~-~h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~ 1907 (2004)
++ .++++++.|| .|++||++++ ..+..+. +|...|.+++|+| +++++++++.||.|++||+++++.+..+.
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-- 302 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP-- 302 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE--
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec--
Confidence 97 6899999998 9999999986 5667777 8999999999999 99999999999999999999999888874
Q ss_pred CCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEc-----------------------------------cC
Q psy8748 1908 NKNSGFTSCAVSSSG-RYIFCGSDDNNVHVWDLLKTTHNGVLS-----------------------------------GH 1951 (2004)
Q Consensus 1908 ~~~s~ItsLafSPdG-~~LaSGSsDGsIrIWDL~tge~l~tL~-----------------------------------gH 1951 (2004)
.|...+.+++|+|++ .++++++.||.|++||+.++....... .|
T Consensus 303 ~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (416)
T 2pm9_A 303 ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWY 382 (416)
T ss_dssp CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTT
T ss_pred CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccc
Confidence 556789999999999 899999999999999998765432211 16
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1952 ENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1952 s~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
..++.+++|+|+|++|++++.||.|++|++.++
T Consensus 383 ~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 383 GEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 778889999999999999999999999999875
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.5e-34 Score=341.92 Aligned_cols=282 Identities=20% Similarity=0.334 Sum_probs=248.6
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|.+.|++++|+|+|++||+ |+.||+|++||..+ +..
T Consensus 52 ~gH~~~v~~~~~s~d~~~l~s-~s~Dg~v~iWd~~~-------------~~~---------------------------- 89 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSRLLLS-ASQDGKLIIWDSYT-------------TNK---------------------------- 89 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEE-EETTTEEEEEETTT-------------CCE----------------------------
T ss_pred cCCCCceEEEEECCCCCEEEE-EeCCCcEEEEECCC-------------CCc----------------------------
Confidence 458889999999999999999 99999999999877 211
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
...+.+|...|.+++|+|+++++++|+
T Consensus 90 -----------------------------------------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~ 116 (340)
T 1got_B 90 -----------------------------------------------------VHAIPLRSSWVMTCAYAPSGNYVACGG 116 (340)
T ss_dssp -----------------------------------------------------EEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred -----------------------------------------------------ceEeecCCccEEEEEECCCCCEEEEEe
Confidence 123345788999999999999999999
Q ss_pred CCCeEEEEECCCC----ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceee
Q psy8748 1712 LDGKLIIWDTWTG----NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS 1787 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tg----k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vss 1787 (2004)
.||.|++||+.++ .....+.+|.+.|.++.|++++. +++++.||.|++||+.++ .....+.+|.+.+.+
T Consensus 117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~------~~~~~~~~h~~~v~~ 189 (340)
T 1got_B 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG------QQTTTFTGHTGDVMS 189 (340)
T ss_dssp TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT------EEEEEECCCSSCEEE
T ss_pred CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC------cEEEEEcCCCCceEE
Confidence 9999999999876 34567789999999999998775 889999999999999754 566778899999999
Q ss_pred eEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEec--
Q psy8748 1788 CRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG-- 1864 (2004)
Q Consensus 1788 vafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~-- 1864 (2004)
+.|++++ .+++|+.||.|++||++++.... .+.+|...|.+++|+|++++|++|+.||.|++||++.++.+..+..
T Consensus 190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~-~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~ 268 (340)
T 1got_B 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQ-TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEE-EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCeeEE-EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC
Confidence 9999654 58899999999999999988774 4578999999999999999999999999999999999988777643
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1865 HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1865 h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
+...|.+++|+|+|+++++|+.||.|++||+.+++....+ .+|...|.+++|+|+|.+|++|+.||.|++||
T Consensus 269 ~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~--~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe--ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 2347999999999999999999999999999999888777 45678999999999999999999999999996
No 23
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.5e-34 Score=340.56 Aligned_cols=292 Identities=24% Similarity=0.397 Sum_probs=253.1
Q ss_pred CCCCCCCeEEEEEccCC-CEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1551 PEPCKEQRNAVSFHACS-TLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdG-k~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
.++|++.|++++|+|++ ++||| |+.||+|++|++.. .. ..
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s-~s~D~~v~~W~~~~--------------------~~----------~~-------- 53 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLS-ASRDKTLISWKLTG--------------------DD----------QK-------- 53 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEE-EETTSEEEEEEEEE--------------------ET----------TE--------
T ss_pred EccccceEEEEEccCCCccEEEE-ecCCccEEEecCCC--------------------CC----------cc--------
Confidence 35699999999999975 89999 99999999999865 00 00
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVS 1709 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LAS 1709 (2004)
...+...+.+|...|++++|+|++++|++
T Consensus 54 ---------------------------------------------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 54 ---------------------------------------------------FGVPVRSFKGHSHIVQDCTLTADGAYALS 82 (319)
T ss_dssp ---------------------------------------------------EEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ---------------------------------------------------ccccceEEeCCcccEEEEEECCCCCEEEE
Confidence 00134567899999999999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeE
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCR 1789 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssva 1789 (2004)
|+.||+|++||+.+++....+.+|...|.+++|+|++.++++|+.||.|++||++. .....+.+|...+.++.
T Consensus 83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-------~~~~~~~~h~~~v~~~~ 155 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-------QCLATLLGHNDWVSQVR 155 (319)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-------CEEEEECCCSSCEEEEE
T ss_pred EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CeEEEEeccCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999853 45667888999999999
Q ss_pred EeCC-------CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q psy8748 1790 FIDD-------TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF 1862 (2004)
Q Consensus 1790 fsdd-------~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl 1862 (2004)
+.+. ..+++++.|+.|++||+++++... .+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 234 (319)
T 3frx_A 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA-DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234 (319)
T ss_dssp ECCC------CCEEEEEETTSCEEEEETTTTEEEE-EECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe-eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 9753 269999999999999999887664 45689999999999999999999999999999999999998888
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC------CCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy8748 1863 FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP------NKNSGFTSCAVSSSGRYIFCGSDDNNVHV 1936 (2004)
Q Consensus 1863 ~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~------~~~s~ItsLafSPdG~~LaSGSsDGsIrI 1936 (2004)
.. ...|.+++|+|++.++++++. +.+++|++..+.....+... .+...+.+++|+|+|++|++|+.||.|++
T Consensus 235 ~~-~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~v 312 (319)
T 3frx_A 235 SA-QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312 (319)
T ss_dssp EC-CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cC-CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEE
Confidence 65 468999999999999998875 55999999887776665332 23456899999999999999999999999
Q ss_pred EECCCC
Q psy8748 1937 WDLLKT 1942 (2004)
Q Consensus 1937 WDL~tg 1942 (2004)
||+.++
T Consensus 313 Wd~~t~ 318 (319)
T 3frx_A 313 WQVMTA 318 (319)
T ss_dssp EEEEEC
T ss_pred EEEeec
Confidence 998654
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-34 Score=339.11 Aligned_cols=297 Identities=21% Similarity=0.280 Sum_probs=239.7
Q ss_pred cccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC--ceEEEe-eC-CCCceEEEEEecCCCEEEEeecCCeE
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG--NKTQVI-PL-RSAWVMSVAFAQSGNFVACGGMDNMC 1758 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg--k~l~ti-~~-Ht~~ItsLafSPdg~~LaSGS~DGtI 1758 (2004)
.....+.+|.+.|++++|+|+ +|++|+.||+|++||+.++ .....+ .. |...|.+++|+|++++|++|+.||.|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 356788999999999999987 9999999999999999875 344555 34 99999999999999999999999999
Q ss_pred EEEEcCCCCC-CCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCC-c--eeEEeeccccCCeEEEEEC
Q psy8748 1759 TVYDLNNRDS-TGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETG-Q--RIHEVAQAHIGDVVSISLS 1833 (2004)
Q Consensus 1759 rVWDl~t~~~-~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg-~--~i~~il~~h~~~ItsLafS 1833 (2004)
++|++..... .........+.+|...|.++.|+++ .++++|+.|+.|++||+... . .....+.+|...|.+++|+
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 9999864321 1234566778899999999999965 56899999999999999533 2 2234567899999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCC--eEEEEEecCCCCeEEEEEeCC--CCEEEEEECCCeEEEEEccCCc--------ee
Q psy8748 1834 PDGQYFVTGSVDKSCKLWDFREK--KCVQTFFGHEADVNSVCFHPS--GLAFATGSEDKTARLFDIRADQ--------QI 1901 (2004)
Q Consensus 1834 Pdg~~LaSGS~DGsIrIWDlrs~--k~I~tl~~h~s~ItsIafSPd--g~~LaSgS~DGtIrIWDLrtgk--------~i 1901 (2004)
|++++|++|+.||.|++||...+ +++..+.+|...|.+++|+|+ +.++++|+.||+|++||++++. ..
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 99999999999999999998776 678889999999999999998 6789999999999999987542 22
Q ss_pred EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEE-EccCCC-CeEEEEEcC--CCCEEEEEECCCe
Q psy8748 1902 ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT--HNGV-LSGHEN-RVTSISLSP--NGMALVTSSWDQF 1975 (2004)
Q Consensus 1902 ~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge--~l~t-L~gHs~-~VtsLaFSP--Dg~~LaSgS~DGt 1975 (2004)
..+ ...|...|.+++|++++ +|++|+.||.|++||..+++ .... ..+|.. .|.+++|+| ++++|++|+.||+
T Consensus 243 ~~~-~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 243 AIL-PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp EEC-CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred eec-ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence 222 23367889999999765 89999999999999998774 3333 367887 899999999 7899999999999
Q ss_pred EEEEECCC
Q psy8748 1976 VKVWQESN 1983 (2004)
Q Consensus 1976 IrIWdlst 1983 (2004)
|++|++++
T Consensus 321 v~~W~~~~ 328 (330)
T 2hes_X 321 VNFWSLEK 328 (330)
T ss_dssp EEEEEC--
T ss_pred EEEEEecc
Confidence 99999875
No 25
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.2e-34 Score=341.18 Aligned_cols=292 Identities=22% Similarity=0.373 Sum_probs=248.4
Q ss_pred cccccccccccccceeEEEE-----eC-CCCEEEEEeCCCeEEEEECCCC-------ceEEEeeCCCCceEEEEEecCCC
Q psy8748 1681 KLMPKKSLKGHINKVNSVHY-----SG-DSRHCVSGSLDGKLIIWDTWTG-------NKTQVIPLRSAWVMSVAFAQSGN 1747 (2004)
Q Consensus 1681 k~~pi~sL~GHt~~VtsLaF-----SP-DG~~LASGS~DGtIrVWDl~Tg-------k~l~ti~~Ht~~ItsLafSPdg~ 1747 (2004)
.......|.||.+.|++++| ++ ++++|++|+.||+|++||+.++ .....+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 44567789999999999999 76 9999999999999999998753 45667889999999999999999
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEe--ecccc
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEV--AQAHI 1824 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~i--l~~h~ 1824 (2004)
++++|+.||.|++||+.++ .....+.+|...|.++.|+++ ..+++++.||.|++||+...... .. ...|.
T Consensus 90 ~l~s~s~D~~v~lwd~~~~------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~ 162 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTG------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF-SSAEKENHS 162 (343)
T ss_dssp EEEEEETTSEEEEEETTSS------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-ECCTTTSCS
T ss_pred EEEEEcCCCcEEEEECCCC------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-eeecccCCC
Confidence 9999999999999999764 456778899999999999965 46899999999999999843322 22 23688
Q ss_pred CCeEEEEECCCC----------CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q psy8748 1825 GDVVSISLSPDG----------QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894 (2004)
Q Consensus 1825 ~~ItsLafSPdg----------~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWD 1894 (2004)
..|.+++|+|++ .++++++.||.|++|| ...+....+.+|...|.+++|+|+|++|++|+.||.|++||
T Consensus 163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 899999999987 7999999999999999 45677788889999999999999999999999999999999
Q ss_pred ccCC-ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE--EEc-----------cCCCCeEEEEE
Q psy8748 1895 IRAD-QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNG--VLS-----------GHENRVTSISL 1960 (2004)
Q Consensus 1895 Lrtg-k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~--tL~-----------gHs~~VtsLaF 1960 (2004)
+... .....+. +...|.+++|+|++.++++| .|+.|++||+.+++... .+. +|...|.+++|
T Consensus 242 ~~~~~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (343)
T 2xzm_R 242 ILNLTYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317 (343)
T ss_dssp SSCCSSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred CCCCcccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence 9543 3333332 23469999999999988766 57789999998776543 333 68889999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1961 SPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1961 SPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
+|+|++|++|+.||.|++|+++++
T Consensus 318 sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 318 NALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCCeEEEecCCceEEEEEEEcc
Confidence 999999999999999999998765
No 26
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-34 Score=347.02 Aligned_cols=284 Identities=28% Similarity=0.490 Sum_probs=249.5
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCC------------------CceEEEEEecCCCEEEE
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS------------------AWVMSVAFAQSGNFVAC 1751 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht------------------~~ItsLafSPdg~~LaS 1751 (2004)
+|.+.|++++|+|||++||+|+ ++.+++|++.+++.+..+..|. ..|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 6899999999999888776553 24999999999999999
Q ss_pred eecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEE
Q psy8748 1752 GGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSI 1830 (2004)
Q Consensus 1752 GS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsL 1830 (2004)
|+.||.|++||+.++ +....+.+|...|.++.|+++ ..+++++.||.|++||+++++..... .+...+.++
T Consensus 141 ~~~d~~i~iwd~~~~------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~ 212 (393)
T 1erj_A 141 GAEDRLIRIWDIENR------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL--SIEDGVTTV 212 (393)
T ss_dssp EETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEE
T ss_pred EcCCCeEEEEECCCC------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE--EcCCCcEEE
Confidence 999999999999754 566778899999999999854 56999999999999999998876554 466789999
Q ss_pred EECC-CCCEEEEEECCCeEEEEECCCCeEEEEE-------ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc---
Q psy8748 1831 SLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTF-------FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ--- 1899 (2004)
Q Consensus 1831 afSP-dg~~LaSGS~DGsIrIWDlrs~k~I~tl-------~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk--- 1899 (2004)
+|+| +++++++|+.||.|++||++++..+..+ .+|...|.+++|+|+|+++++|+.||.|++||+++..
T Consensus 213 ~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 292 (393)
T 1erj_A 213 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292 (393)
T ss_dssp EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 9999 8999999999999999999999887766 5788999999999999999999999999999997643
Q ss_pred ---------eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcC------CC
Q psy8748 1900 ---------QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP------NG 1964 (2004)
Q Consensus 1900 ---------~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSP------Dg 1964 (2004)
+...+ .+|...|.+++|++++.+|++|+.||.|++||+.+++++..+.+|.+.|.+++|++ ++
T Consensus 293 ~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~ 370 (393)
T 1erj_A 293 DSKTPNSGTCEVTY--IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 370 (393)
T ss_dssp --------CEEEEE--ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred cccCCCCCcceEEE--ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCC
Confidence 22233 35667899999999999999999999999999999999999999999999999986 68
Q ss_pred CEEEEEECCCeEEEEECCCC
Q psy8748 1965 MALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1965 ~~LaSgS~DGtIrIWdlstg 1984 (2004)
.+|++|+.||+|++|++...
T Consensus 371 ~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 371 NVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEEEETTSEEEEEEEEEC
T ss_pred CEEEEECCCCcEEECccccc
Confidence 89999999999999998653
No 27
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-34 Score=350.19 Aligned_cols=246 Identities=16% Similarity=0.177 Sum_probs=207.3
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE----EeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQ----VIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~----ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
..+|...|++++|+|+++ +++++.||+|+|||+.+++... ...+|...|.+++|+|++++|++|+.||.|++||+
T Consensus 90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~ 168 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168 (357)
T ss_dssp EEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 456889999999999986 5567889999999998886543 34579999999999999999999999999999999
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEe-eccccCCeEEEEECCC-CCEE
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEV-AQAHIGDVVSISLSPD-GQYF 1839 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~i-l~~h~~~ItsLafSPd-g~~L 1839 (2004)
.++ .....+.+|...+.+++|+++ ..+++++.||.|++||+++++..... ...+...+.+++|+|+ +.+|
T Consensus 169 ~~~------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l 242 (357)
T 4g56_B 169 SQK------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTF 242 (357)
T ss_dssp TTT------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEE
T ss_pred CCC------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceE
Confidence 754 567788899999999999854 36889999999999999998876443 3456778999999997 5689
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEE
Q psy8748 1840 VTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAV 1918 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg-~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLaf 1918 (2004)
++|+.|+.|++||+++++.+..+.+|...|++++|+|++ ++|++|+.||+|++||+++++....+ .|...|++++|
T Consensus 243 a~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vaf 319 (357)
T 4g56_B 243 ACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAW 319 (357)
T ss_dssp EEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEE
T ss_pred EEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEE
Confidence 999999999999999999999999999999999999987 57899999999999999998877654 57789999999
Q ss_pred cC-CCCEEEEEeCCCeEEEEECCCCe
Q psy8748 1919 SS-SGRYIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1919 SP-dG~~LaSGSsDGsIrIWDL~tge 1943 (2004)
+| ++++|++|+.||+|++||+.+..
T Consensus 320 sP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 320 SPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CSSSTTEEEEEETTSCEEEEECC---
T ss_pred eCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 98 89999999999999999996543
No 28
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-34 Score=398.95 Aligned_cols=390 Identities=18% Similarity=0.259 Sum_probs=316.5
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1550 APEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1550 a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
...+|.+.|++++|||+|++||+ |+.||+|++||+.+ +.....+.+|...+.+ +.++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s-~~~d~~i~vw~~~~-------------~~~~~~~~~h~~~v~~--------~~~s~ 667 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIAS-CGADKTLQVFKAET-------------GEKLLDIKAHEDEVLC--------CAFSS 667 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTT-------------CCEEEEECCCSSCEEE--------EEECT
T ss_pred EEecccccEEEEEECCCCCEEEE-EeCCCeEEEEECCC-------------CCEEEEeccCCCCEEE--------EEEec
Confidence 34568999999999999999999 99999999999988 6777777776665544 33355
Q ss_pred CCcchh------hhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeC-
Q psy8748 1630 TSSINI------YLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG- 1702 (2004)
Q Consensus 1630 dgSidi------~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSP- 1702 (2004)
++..-. .+..| +. ........+.+|.+.|++++|+|
T Consensus 668 ~~~~l~s~~~d~~v~vw----------------------------d~---------~~~~~~~~~~~~~~~v~~~~~~~~ 710 (1249)
T 3sfz_A 668 DDSYIATCSADKKVKIW----------------------------DS---------ATGKLVHTYDEHSEQVNCCHFTNK 710 (1249)
T ss_dssp TSSEEEEEETTSEEEEE----------------------------ET---------TTCCEEEEEECCSSCEEEEEECSS
T ss_pred CCCEEEEEeCCCeEEEE----------------------------EC---------CCCceEEEEcCCCCcEEEEEEecC
Confidence 442111 11111 00 01245677889999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceE-------
Q psy8748 1703 -DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKV------- 1774 (2004)
Q Consensus 1703 -DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~------- 1774 (2004)
++.++++|+.||.|++||+.+++....+.+|.+.|.+++|+|+++++++|+.||.|++||+.++........
T Consensus 711 ~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 790 (1249)
T 3sfz_A 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 790 (1249)
T ss_dssp SSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC---
T ss_pred CCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccccc
Confidence 556899999999999999999999999999999999999999999999999999999999976431111000
Q ss_pred EEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECC
Q psy8748 1775 IRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR 1854 (2004)
Q Consensus 1775 i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlr 1854 (2004)
..........+.++.|++++..++++.++.+.+||..++........+|...|.+++|+|+++++++++.||.|++||+.
T Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870 (1249)
T ss_dssp -----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred CCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence 00111223467888999887766666789999999999999888878999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCcee-----------------------------EEEc
Q psy8748 1855 EKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQI-----------------------------ATYL 1905 (2004)
Q Consensus 1855 s~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i-----------------------------~t~~ 1905 (2004)
++..+..+.+|...|.+++|+|+|+++++++.||.|++||+.+.... ....
T Consensus 871 ~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1249)
T 3sfz_A 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950 (1249)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence 99999999999999999999999999999999999999997532100 0000
Q ss_pred C------CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1906 P------PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1906 ~------~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
. ......+.+++|+|+|+++++|+.+|.|++||+.+++....+.+|.+.|++++|+|+|++|++++.||.|++|
T Consensus 951 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030 (1249)
T ss_dssp ESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEE
T ss_pred cCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 0 0123568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEEeecCCCCcccc
Q psy8748 1980 QESNTIVWKVLKVYNLEKKTIFC 2002 (2004)
Q Consensus 1980 dlstg~l~k~Ik~~~~h~~~Vts 2002 (2004)
++.++... ....|...|.+
T Consensus 1031 d~~~~~~~----~~~~~~~~v~~ 1049 (1249)
T 3sfz_A 1031 NWQTGDYV----FLQAHQETVKD 1049 (1249)
T ss_dssp ETTTTEEE----CCBCCSSCEEE
T ss_pred ECCCCceE----EEecCCCcEEE
Confidence 99998543 23356665554
No 29
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=330.72 Aligned_cols=294 Identities=18% Similarity=0.300 Sum_probs=263.0
Q ss_pred ccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1682 LMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1682 ~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
......+.+|.+.|++++|+|++++|++|+.||.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecC-----CeEEEEECCCCceeE----------EeeccccC
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGD-----MKIVTWNLETGQRIH----------EVAQAHIG 1825 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~D-----GtI~IWDl~tg~~i~----------~il~~h~~ 1825 (2004)
|+.++ +....+. +...+.++.|.+++ .+++++.+ |.|++||+..+.... .....|.+
T Consensus 102 d~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 102 DVSNG------QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp ETTTC------CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred ECCCC------cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 99764 2333443 77889999999654 57778887 999999997664321 12234444
Q ss_pred --CeEEEEECCCCCEEEEEECCCeEEEEECCC-CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeE
Q psy8748 1826 --DVVSISLSPDGQYFVTGSVDKSCKLWDFRE-KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIA 1902 (2004)
Q Consensus 1826 --~ItsLafSPdg~~LaSGS~DGsIrIWDlrs-~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~ 1902 (2004)
.+.+++|+|+++++++++.||.|++||+++ +..+..+..|...|.+++|+|++++|++++.||.|++||+++++...
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 899999999999999999999999999998 78888999999999999999999999999999999999999999888
Q ss_pred EEcCCCCCCCeEEEEEcCCCCEEEEEeCCC--------------eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEE
Q psy8748 1903 TYLPPNKNSGFTSCAVSSSGRYIFCGSDDN--------------NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALV 1968 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSPdG~~LaSGSsDG--------------sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~La 1968 (2004)
.+. +...+.+++|+|+++++++++.++ .+++||..+++.+..+.+|...|++++|+|++++|+
T Consensus 255 ~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 331 (369)
T 3zwl_B 255 KYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA 331 (369)
T ss_dssp EEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred eec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEE
Confidence 875 456799999999999999999988 899999999999999999999999999999999999
Q ss_pred EEECCCeEEEEECCCCe
Q psy8748 1969 TSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1969 SgS~DGtIrIWdlstg~ 1985 (2004)
+++.||.|++|+++++.
T Consensus 332 s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 332 SGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEETTSEEEEEEECHHH
T ss_pred EEcCCCeEEEEECcccc
Confidence 99999999999998753
No 30
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-34 Score=387.22 Aligned_cols=350 Identities=11% Similarity=0.138 Sum_probs=270.3
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|...|++++|+|+|++||+ |+.||+|+||+... ....
T Consensus 14 ~gh~~~V~~lafspdg~~lAs-gs~Dg~I~lw~~~~-------------~~~~--------------------------- 52 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAI-ATVTGEVHIYGQQQ-------------VEVV--------------------------- 52 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEE-EETTSEEEEECSTT-------------CEEE---------------------------
T ss_pred cCCCCCcEEEEECCCCCEEEE-EeCCCEEEEEeCCC-------------cEEE---------------------------
Confidence 358889999999999999999 99999999999765 1100
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
. ...|...|++++|+| |++|++++
T Consensus 53 ------------------------------------------------------~-~~~~~~~V~~l~fsp-g~~L~S~s 76 (902)
T 2oaj_A 53 ------------------------------------------------------I-KLEDRSAIKEMRFVK-GIYLVVIN 76 (902)
T ss_dssp ------------------------------------------------------E-ECSSCCCEEEEEEET-TTEEEEEE
T ss_pred ------------------------------------------------------E-EcCCCCCEEEEEEcC-CCEEEEEE
Confidence 0 012667899999999 88999999
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEE-------EEEecCccc
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVI-------RELLGYEGF 1784 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i-------~sl~gh~~~ 1784 (2004)
.|++|++||+.+++.+..+. |.+.|++++|+|+++++++|+.||.|++||++++... .. .. ....+|.+.
T Consensus 77 ~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~-~i~~~~~~~~~~~~h~~~ 153 (902)
T 2oaj_A 77 AKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SF-KLDNLQKSSFFPAARLSP 153 (902)
T ss_dssp TTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EE-EECCHHHHHTCSSSCCCC
T ss_pred CcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cc-eeccccccccccccCCCC
Confidence 99999999999999988886 6688999999999999999999999999999865310 00 00 223568889
Q ss_pred eeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEeec-----------------cccCCeEEEEECCCCCEEEEEECC
Q psy8748 1785 LSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQ-----------------AHIGDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1785 Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~il~-----------------~h~~~ItsLafSPdg~~LaSGS~D 1845 (2004)
|.+++|+++ ..+++|+.||.| +||+++++....+.. .|...|.+++|+|+|++|++|+.|
T Consensus 154 V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D 232 (902)
T 2oaj_A 154 IVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED 232 (902)
T ss_dssp CCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC
Confidence 999999975 579999999999 999999887654421 235779999999999999999999
Q ss_pred CeEEEEECCCCeEEEE--Ee---c-------------CCCCeEEEEE---------------------------------
Q psy8748 1846 KSCKLWDFREKKCVQT--FF---G-------------HEADVNSVCF--------------------------------- 1874 (2004)
Q Consensus 1846 GsIrIWDlrs~k~I~t--l~---~-------------h~s~ItsIaf--------------------------------- 1874 (2004)
|.|++||+++++.+.. +. . |...|.+++|
T Consensus 233 g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~ 312 (902)
T 2oaj_A 233 NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGY 312 (902)
T ss_dssp CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEE
T ss_pred CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCC
Confidence 9999999977654432 10 0 1112333333
Q ss_pred --------------------------------------------------------------------------------
Q psy8748 1875 -------------------------------------------------------------------------------- 1874 (2004)
Q Consensus 1875 -------------------------------------------------------------------------------- 1874 (2004)
T Consensus 313 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~ 392 (902)
T 2oaj_A 313 TPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASL 392 (902)
T ss_dssp CCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGG
T ss_pred CCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccccc
Confidence
Q ss_pred ---------------------------------------------------eCCCCEEEEEECCCeEEEEEccCCcee--
Q psy8748 1875 ---------------------------------------------------HPSGLAFATGSEDKTARLFDIRADQQI-- 1901 (2004)
Q Consensus 1875 ---------------------------------------------------SPdg~~LaSgS~DGtIrIWDLrtgk~i-- 1901 (2004)
+|+++++++|+.||+|++||+.++...
T Consensus 393 ~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~ 472 (902)
T 2oaj_A 393 FPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN 472 (902)
T ss_dssp SCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT
T ss_pred CCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC
Confidence 234455666666666666666554311
Q ss_pred --EEEc-----CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------------------------
Q psy8748 1902 --ATYL-----PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT-------------------------------- 1942 (2004)
Q Consensus 1902 --~t~~-----~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg-------------------------------- 1942 (2004)
.... ...|...|.+++|+|+|++||+|+.||+|++||+.++
T Consensus 473 ~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (902)
T 2oaj_A 473 ASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVD 552 (902)
T ss_dssp BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEE
T ss_pred ceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccc
Confidence 0000 0145568999999999999999999999999999765
Q ss_pred -------------eeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--EEeec-CCCCccccc
Q psy8748 1943 -------------THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKV--LKVYN-LEKKTIFCV 2003 (2004)
Q Consensus 1943 -------------e~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~--Ik~~~-~h~~~VtsV 2003 (2004)
+++..+.+|.+.|++++|+||| +||+|+.||+|++||++++..... ++.+. .|.+.|++|
T Consensus 553 ~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv 628 (902)
T 2oaj_A 553 VRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCI 628 (902)
T ss_dssp CGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEE
T ss_pred ccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEE
Confidence 2467788999999999999999 999999999999999998865432 12343 777888876
No 31
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.3e-34 Score=339.74 Aligned_cols=301 Identities=20% Similarity=0.270 Sum_probs=246.3
Q ss_pred CCCC-CeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1553 PCKE-QRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1553 ~Hk~-~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.|.+ .|++++|+|+|++||+ |+.||+|+|||+.+ +....
T Consensus 13 ~h~~~~v~~l~~sp~g~~las-~~~D~~i~iw~~~~-------------~~~~~-------------------------- 52 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLAS-CGGDRRIRIWGTEG-------------DSWIC-------------------------- 52 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEE-EETTSCEEEEEEET-------------TEEEE--------------------------
T ss_pred CCCCCcEEEEEECCCCCEEEE-EcCCCeEEEEEcCC-------------Cccee--------------------------
Confidence 4666 8999999999999999 99999999999876 11000
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
......+|.+.|++++|+|+|++|++|+
T Consensus 53 ----------------------------------------------------~~~~~~~h~~~v~~~~~sp~g~~l~s~s 80 (345)
T 3fm0_A 53 ----------------------------------------------------KSVLSEGHQRTVRKVAWSPCGNYLASAS 80 (345)
T ss_dssp ----------------------------------------------------EEEECSSCSSCEEEEEECTTSSEEEEEE
T ss_pred ----------------------------------------------------eeeeccccCCcEEEEEECCCCCEEEEEE
Confidence 0011247999999999999999999999
Q ss_pred CCCeEEEEECCCC--ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeE
Q psy8748 1712 LDGKLIIWDTWTG--NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCR 1789 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tg--k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssva 1789 (2004)
.||+|++||..++ +....+.+|...|.+++|+|++++|++|+.||.|++||+.... .......+.+|...+.++.
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~~~h~~~v~~~~ 157 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED---EYECVSVLNSHTQDVKHVV 157 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS---CEEEEEEECCCCSCEEEEE
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC---CeEEEEEecCcCCCeEEEE
Confidence 9999999998876 4567889999999999999999999999999999999997643 3455677888999999999
Q ss_pred EeCC-CcEEEeecCCeEEEEECCCCcee-EEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCC------------
Q psy8748 1790 FIDD-TTLLTGSGDMKIVTWNLETGQRI-HEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE------------ 1855 (2004)
Q Consensus 1790 fsdd-~~LlSgS~DGtI~IWDl~tg~~i-~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs------------ 1855 (2004)
|+++ ..+++++.||.|++||..++... ...+.+|...|.+++|+|+|++|++|+.||.|++||...
T Consensus 158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~ 237 (345)
T 3fm0_A 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237 (345)
T ss_dssp ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence 9865 56899999999999999887643 244678999999999999999999999999999999632
Q ss_pred ---CeEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce-------eEEEcCCCCCCCeEEEEEcCCC-C
Q psy8748 1856 ---KKCVQTFFG-HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ-------IATYLPPNKNSGFTSCAVSSSG-R 1923 (2004)
Q Consensus 1856 ---~k~I~tl~~-h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~-------i~t~~~~~~~s~ItsLafSPdG-~ 1923 (2004)
.+++..+.+ |...|.+++|+|++..+++++.|+.|++|+...+.. ........|...|.+++|+|++ .
T Consensus 238 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 317 (345)
T 3fm0_A 238 DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG 317 (345)
T ss_dssp -CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTT
T ss_pred CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCce
Confidence 133445544 888999999999999999999999999999875431 1111234677899999999987 5
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEE
Q psy8748 1924 YIFCGSDDNNVHVWDLLKTTHNGVL 1948 (2004)
Q Consensus 1924 ~LaSGSsDGsIrIWDL~tge~l~tL 1948 (2004)
+|++|+.||+|++|++.+.+.....
T Consensus 318 ~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 318 LLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEEEETTSCEEEEEECC-------
T ss_pred EEEEcCCCCcEEEEEecCCCCcccc
Confidence 9999999999999999887765443
No 32
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-33 Score=357.24 Aligned_cols=326 Identities=14% Similarity=0.189 Sum_probs=269.6
Q ss_pred CCCCCCeEEEEEccCCC-EEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1552 EPCKEQRNAVSFHACST-LLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk-~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..|...|++++|+|+|+ ++++ |+.||+|++||..+ ++..
T Consensus 157 ~~~~~~v~~~~~~~~~~~~l~~-~~~d~~v~vwd~~~-------------~~~~-------------------------- 196 (615)
T 1pgu_A 157 SGHSQRINACHLKQSRPMRSMT-VGDDGSVVFYQGPP-------------FKFS-------------------------- 196 (615)
T ss_dssp CSCSSCEEEEEECSSSSCEEEE-EETTTEEEEEETTT-------------BEEE--------------------------
T ss_pred ecCCccEEEEEECCCCCcEEEE-EeCCCcEEEEeCCC-------------ccee--------------------------
Confidence 45888999999999998 7888 99999999999876 2211
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCccccccccccccccc---ceeEEEEeCC-CCE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHIN---KVNSVHYSGD-SRH 1706 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~---~VtsLaFSPD-G~~ 1706 (2004)
..+.+|.+ .|++++|+|+ +++
T Consensus 197 -------------------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~ 221 (615)
T 1pgu_A 197 -------------------------------------------------------ASDRTHHKQGSFVRDVEFSPDSGEF 221 (615)
T ss_dssp -------------------------------------------------------EEECSSSCTTCCEEEEEECSTTCCE
T ss_pred -------------------------------------------------------eeecccCCCCceEEEEEECCCCCCE
Confidence 22345666 8999999999 999
Q ss_pred EEEEeCCCeEEEEECCCCceEEEe-e---CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecC-
Q psy8748 1707 CVSGSLDGKLIIWDTWTGNKTQVI-P---LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY- 1781 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tgk~l~ti-~---~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh- 1781 (2004)
+++++.||.|++||+.+++.+..+ . .|...|.+++|+ +++++++++.||.|++||+.++ +....+..+
T Consensus 222 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~------~~~~~~~~~~ 294 (615)
T 1pgu_A 222 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS------KCVQKWTLDK 294 (615)
T ss_dssp EEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT------EEEEEEECCT
T ss_pred EEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC------cEEEEEcCCC
Confidence 999999999999999999999998 6 899999999999 9999999999999999999754 344445444
Q ss_pred ---ccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC-----------------------
Q psy8748 1782 ---EGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD----------------------- 1835 (2004)
Q Consensus 1782 ---~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd----------------------- 1835 (2004)
...+.++.+.++..+++++.||.|++||+.+++....+ .+|...|.+++| |+
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~-~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~ 372 (615)
T 1pgu_A 295 QQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTI-SGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHS 372 (615)
T ss_dssp TCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEE-CCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCC
T ss_pred CcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEE-eCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCccc
Confidence 46677788888888999999999999998876554322 233333333322 11
Q ss_pred --------------------------------------------------------------------------------
Q psy8748 1836 -------------------------------------------------------------------------------- 1835 (2004)
Q Consensus 1836 -------------------------------------------------------------------------------- 1835 (2004)
T Consensus 373 ~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (615)
T 1pgu_A 373 NLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 452 (615)
T ss_dssp SCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred CceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE
Confidence
Q ss_pred ---CCEEEEEEC-CCeEEEEECCCCeEE-EEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCC
Q psy8748 1836 ---GQYFVTGSV-DKSCKLWDFREKKCV-QTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN 1910 (2004)
Q Consensus 1836 ---g~~LaSGS~-DGsIrIWDlrs~k~I-~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~ 1910 (2004)
++++++++. ||.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+.. .|.
T Consensus 453 ~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~h~ 531 (615)
T 1pgu_A 453 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA-FRT 531 (615)
T ss_dssp EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC-CCS
T ss_pred EEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec-CCC
Confidence 445566666 677777777665544 55667889999999999999999999999999999999988776532 267
Q ss_pred CCeEEEEEcC----------CCCEEEEEeCCCeEEEEECCCC-eeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1911 SGFTSCAVSS----------SGRYIFCGSDDNNVHVWDLLKT-THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1911 s~ItsLafSP----------dG~~LaSGSsDGsIrIWDL~tg-e~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
..|++++|+| ++++|++|+.||.|++||+.++ +.+..+.+|...|++++|+|+++ |++++.||.|++|
T Consensus 532 ~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw 610 (615)
T 1pgu_A 532 SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRW 610 (615)
T ss_dssp SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEE
Confidence 8899999999 9999999999999999999998 78888999999999999999999 9999999999999
Q ss_pred ECCC
Q psy8748 1980 QESN 1983 (2004)
Q Consensus 1980 dlst 1983 (2004)
+++.
T Consensus 611 ~~~~ 614 (615)
T 1pgu_A 611 NVVL 614 (615)
T ss_dssp EEC-
T ss_pred eeec
Confidence 9875
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=345.60 Aligned_cols=245 Identities=18% Similarity=0.195 Sum_probs=210.2
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE----eeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQV----IPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~t----i~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
..|..+|++++|+|++ .+++|+.||+|+|||+.+++.... ..+|.+.|++++|+|+|++|++|+.||.|++||+.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 3467889999999985 688999999999999999876544 35899999999999999999999999999999997
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEee-ccccCCeEEEEECC-CCCEEE
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEVA-QAHIGDVVSISLSP-DGQYFV 1840 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~il-~~h~~~ItsLafSP-dg~~La 1840 (2004)
++ +....+.+|...|.++.|++++ .+++++.||.|++||+++++....+. ..+...+.+++|+| ++++++
T Consensus 158 ~~------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 158 QQ------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp TT------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred CC------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence 54 6678889999999999998654 57899999999999999998876553 34566799999999 456889
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEc
Q psy8748 1841 TGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVS 1919 (2004)
Q Consensus 1841 SGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg-~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafS 1919 (2004)
+|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++|+.||+|++||+++++... + .+|...|++++|+
T Consensus 232 sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~--~~H~~~V~~v~~s 308 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S--QAHRDFVRDATWS 308 (344)
T ss_dssp EEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E--CCCSSCEEEEEEC
T ss_pred EeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E--cCCCCCEEEEEEe
Confidence 99999999999999999999999999999999999998 579999999999999999887654 3 4677899999999
Q ss_pred CCCC-EEEEEeCCCeEEEEECCCCe
Q psy8748 1920 SSGR-YIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1920 PdG~-~LaSGSsDGsIrIWDL~tge 1943 (2004)
|+++ +|++|+.||+|++|++.+..
T Consensus 309 p~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9886 57789999999999997654
No 34
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-33 Score=339.81 Aligned_cols=283 Identities=20% Similarity=0.343 Sum_probs=248.9
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|.+.|++++|+|+|++||| |+.||+|+|||..+ ++.
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s-~s~Dg~v~vWd~~~-------------~~~---------------------------- 98 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVS-SSQDGKVIVWDSFT-------------TNK---------------------------- 98 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEE-EETTSEEEEEETTT-------------CCE----------------------------
T ss_pred cCCCCeEEEEEECCCCCEEEE-EeCCCeEEEEECCC-------------CCc----------------------------
Confidence 458899999999999999999 99999999999866 111
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
...+..|...|.+++|+|+|.++++|+
T Consensus 99 -----------------------------------------------------~~~~~~~~~~v~~~~~sp~g~~lasg~ 125 (354)
T 2pbi_B 99 -----------------------------------------------------EHAVTMPCTWVMACAYAPSGCAIACGG 125 (354)
T ss_dssp -----------------------------------------------------EEEEECSSSCCCEEEECTTSSEEEEES
T ss_pred -----------------------------------------------------ceEEecCCCCEEEEEECCCCCEEEEee
Confidence 112334667899999999999999999
Q ss_pred CCCeEEEEECCCC------ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccce
Q psy8748 1712 LDGKLIIWDTWTG------NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL 1785 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tg------k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~V 1785 (2004)
.|+.+++|++... .....+..|...|.+++|+|++..+++++.||.|++||++++ .....+.+|...+
T Consensus 126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~------~~~~~~~~h~~~v 199 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG------QLLQSFHGHGADV 199 (354)
T ss_dssp TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCE
T ss_pred CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC------eEEEEEcCCCCCe
Confidence 9999999998654 345667889999999999999999999999999999999764 4567788999999
Q ss_pred eeeEEeC---CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q psy8748 1786 SSCRFID---DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF 1862 (2004)
Q Consensus 1786 ssvafsd---d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl 1862 (2004)
.++.+.+ +..+++|+.||.|++||+++++.+. .+.+|...|.+++|+|++++|++|+.||.|++||++.++.+..+
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~-~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~ 278 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ-AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE-EecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 9998874 3679999999999999999998774 45789999999999999999999999999999999998877766
Q ss_pred ecC--CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1863 FGH--EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1863 ~~h--~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
..+ ...+.+++|+|++.++++|+.||.|++||+.+++.+..+ ..|...|++++|+|+|++|++|+.||+|++|+
T Consensus 279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l--~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL--FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE--CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE--ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 543 347899999999999999999999999999999888777 46778999999999999999999999999995
No 35
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.4e-34 Score=343.41 Aligned_cols=283 Identities=15% Similarity=0.245 Sum_probs=239.3
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
..+....|++++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++|+.||.|++||+.++
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~------ 171 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG------ 171 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC------
Confidence 34556678999999999999999999999999998888899999999999999999999999999999999865
Q ss_pred eEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeec--cccCCeE---------------------
Q psy8748 1773 KVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQ--AHIGDVV--------------------- 1828 (2004)
Q Consensus 1773 k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~--~h~~~It--------------------- 1828 (2004)
.....+.+|...+.++.|+++ ..+++++.||.|++||+++++....+.. .+...+.
T Consensus 172 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~ 251 (420)
T 3vl1_A 172 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKN 251 (420)
T ss_dssp CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCccc
Confidence 344567789999999999965 4689999999999999999987755532 2334444
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCCCC-EEEEEECCCeEEEEEccCCce-eEEEc
Q psy8748 1829 SISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVCFHPSGL-AFATGSEDKTARLFDIRADQQ-IATYL 1905 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~-~h~s~ItsIafSPdg~-~LaSgS~DGtIrIWDLrtgk~-i~t~~ 1905 (2004)
+++|+|+++++++|+.||.|++||+++++.+..+. .|...|.+++|+|++. ++++|+.||.|++||+++++. +..+.
T Consensus 252 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp TTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred ceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh
Confidence 45557899999999999999999999988777764 4788999999999998 999999999999999998765 44443
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------eeeEEEccCCCCeEEEEEcCCCC---EEEEEECC
Q psy8748 1906 PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT---------THNGVLSGHENRVTSISLSPNGM---ALVTSSWD 1973 (2004)
Q Consensus 1906 ~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg---------e~l~tL~gHs~~VtsLaFSPDg~---~LaSgS~D 1973 (2004)
..+...+.++.+ +++++|++|+.||.|++||+... .....+.+|.+.|.+++|+|++. .++++|.+
T Consensus 332 -~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~ 409 (420)
T 3vl1_A 332 -INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN 409 (420)
T ss_dssp -ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETT
T ss_pred -ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCC
Confidence 234567777755 57889999999999999998763 22344667899999999999999 88888899
Q ss_pred CeEEEEECCC
Q psy8748 1974 QFVKVWQESN 1983 (2004)
Q Consensus 1974 GtIrIWdlst 1983 (2004)
|.+.+|++++
T Consensus 410 g~~~~~~~~~ 419 (420)
T 3vl1_A 410 NFCALYNLSN 419 (420)
T ss_dssp TEEEEEESCC
T ss_pred ceEEEEeccC
Confidence 9999999875
No 36
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.6e-34 Score=338.53 Aligned_cols=296 Identities=23% Similarity=0.315 Sum_probs=241.1
Q ss_pred CCCCCCCeEEEEE-----cc-CCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccc
Q psy8748 1551 PEPCKEQRNAVSF-----HA-CSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRD 1624 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsF-----SP-dGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ 1624 (2004)
..+|++.|++++| +| +|++||| |+.||+|++||+.. ... .+
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~s-gs~D~~v~iWd~~~-------------~~~----~~--------------- 63 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLIS-GSRDKTVMIWKLYE-------------EEQ----NG--------------- 63 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEE-EETTSCEEEEEECS-------------SCC----SS---------------
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEE-EcCCCEEEEEECCc-------------CCc----cc---------------
Confidence 3469999999999 77 9999999 99999999999876 000 00
Q ss_pred cccCCCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCC
Q psy8748 1625 LMMKPTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDS 1704 (2004)
Q Consensus 1625 ll~spdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG 1704 (2004)
....+...+.+|...|++++|+|++
T Consensus 64 -------------------------------------------------------~~~~~~~~l~~h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 64 -------------------------------------------------------YFGIPHKALTGHNHFVSDLALSQEN 88 (343)
T ss_dssp -------------------------------------------------------BSEEEEEEECCCSSCEEEEEECSST
T ss_pred -------------------------------------------------------ccccccchhccCCCceEEEEECCCC
Confidence 0011345678899999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
.++++|+.||+|++||+.+++....+.+|...|.+++|+|+++++++|+.||.|++||+.... ........+|...
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~ 164 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC----KFSSAEKENHSDW 164 (343)
T ss_dssp TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE----EEECCTTTSCSSC
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc----eeeeecccCCCce
Confidence 999999999999999999999999999999999999999999999999999999999986321 1111112367888
Q ss_pred eeeeEEeCC-----------CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1785 LSSCRFIDD-----------TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1785 Vssvafsdd-----------~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
+.++.|.+. ..+++++.||.|++||.. ++.. ..+.+|...|.+++|+|+|++|++|+.||.|++||+
T Consensus 165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~-~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIR-YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEE-EEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Ccee-EEEcCccccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 999999865 469999999999999943 3333 445789999999999999999999999999999999
Q ss_pred CC-CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeE--EEcC---------CCCCCCeEEEEEcCC
Q psy8748 1854 RE-KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIA--TYLP---------PNKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1854 rs-~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~--t~~~---------~~~~s~ItsLafSPd 1921 (2004)
.. ......+ .+...|.+++|+|++.+++++ .|+.|++||+.+++... .+.. ..+...+.+++|+|+
T Consensus 243 ~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 320 (343)
T 2xzm_R 243 LNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL 320 (343)
T ss_dssp SCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS
T ss_pred CCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC
Confidence 54 3333333 456679999999999887655 58889999998776544 3321 145677999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCC
Q psy8748 1922 GRYIFCGSDDNNVHVWDLLKT 1942 (2004)
Q Consensus 1922 G~~LaSGSsDGsIrIWDL~tg 1942 (2004)
|++|++|+.||.|++|++.++
T Consensus 321 g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 321 GKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SCCEEEEETTSEEEEEEEEEE
T ss_pred CCeEEEecCCceEEEEEEEcc
Confidence 999999999999999998654
No 37
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.4e-35 Score=401.32 Aligned_cols=382 Identities=18% Similarity=0.304 Sum_probs=305.4
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
..|.+.|++++|+|+|++||+ |+.||+|+|||+.+ ++....+.+|...+.+ +.+.+++
T Consensus 654 ~~h~~~v~~~~~s~~~~~l~s-~~~d~~v~vwd~~~-------------~~~~~~~~~~~~~v~~--------~~~~~~~ 711 (1249)
T 3sfz_A 654 KAHEDEVLCCAFSSDDSYIAT-CSADKKVKIWDSAT-------------GKLVHTYDEHSEQVNC--------CHFTNKS 711 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEE-EETTSEEEEEETTT-------------CCEEEEEECCSSCEEE--------EEECSSS
T ss_pred ccCCCCEEEEEEecCCCEEEE-EeCCCeEEEEECCC-------------CceEEEEcCCCCcEEE--------EEEecCC
Confidence 358889999999999999999 99999999999988 6777777776655543 1222221
Q ss_pred c--------chhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCC
Q psy8748 1632 S--------INIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGD 1703 (2004)
Q Consensus 1632 S--------idi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPD 1703 (2004)
. .+..+..| +. ........+.+|.+.|++++|+|+
T Consensus 712 ~~~~l~sg~~d~~v~vw----------------------------d~---------~~~~~~~~~~~h~~~v~~~~~sp~ 754 (1249)
T 3sfz_A 712 NHLLLATGSNDFFLKLW----------------------------DL---------NQKECRNTMFGHTNSVNHCRFSPD 754 (1249)
T ss_dssp SCCEEEEEETTSCEEEE----------------------------ET---------TSSSEEEEECCCSSCEEEEEECSS
T ss_pred CceEEEEEeCCCeEEEE----------------------------EC---------CCcchhheecCCCCCEEEEEEecC
Confidence 1 01111111 00 012345678899999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEe-----------------------------------------------------
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVI----------------------------------------------------- 1730 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti----------------------------------------------------- 1730 (2004)
++++++|+.||.|++||+.+++....+
T Consensus 755 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~ 834 (1249)
T 3sfz_A 755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834 (1249)
T ss_dssp TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE
Confidence 999999999999999998776544332
Q ss_pred --eCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEE
Q psy8748 1731 --PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVT 1807 (2004)
Q Consensus 1731 --~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~I 1807 (2004)
.+|...|.+++|+|+++++++++.||.|++|++.++ .....+.+|...+.++.|++++ .+++++.||.|++
T Consensus 835 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~------~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~v 908 (1249)
T 3sfz_A 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR------LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908 (1249)
T ss_dssp EECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC------ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEE
Confidence 167788999999999999999999999999999754 4566677888888888887544 5777777888877
Q ss_pred EECC----------------------------------------------------------------------------
Q psy8748 1808 WNLE---------------------------------------------------------------------------- 1811 (2004)
Q Consensus 1808 WDl~---------------------------------------------------------------------------- 1811 (2004)
||+.
T Consensus 909 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~ 988 (1249)
T 3sfz_A 909 WETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII 988 (1249)
T ss_dssp EEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEE
T ss_pred EEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEE
Confidence 7743
Q ss_pred ---CCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC
Q psy8748 1812 ---TGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK 1888 (2004)
Q Consensus 1812 ---tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG 1888 (2004)
++... ....+|...|++++|+|+|+++++++.||.|++||+.+++.. ....|...|.+++|+|++ .+++++.||
T Consensus 989 d~~~~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg 1065 (1249)
T 3sfz_A 989 ELPNNRVF-SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDG 1065 (1249)
T ss_dssp ETTTTSCE-EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSS
T ss_pred EcCCCcee-eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCC
Confidence 22222 223468889999999999999999999999999999998866 455899999999999976 578899999
Q ss_pred eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEE
Q psy8748 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALV 1968 (2004)
Q Consensus 1889 tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~La 1968 (2004)
.|++||+.+++....+. .+...+.+++|+|+|+++++|+.||+|++||+.++++...+.+|.+.|++++|+|+|++|+
T Consensus 1066 ~v~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~la 1143 (1249)
T 3sfz_A 1066 TVKVWNVITGRIERDFT--CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA 1143 (1249)
T ss_dssp EEEEEETTTTCCCEEEE--CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEE
T ss_pred cEEEEECCCCceeEEEc--ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEE
Confidence 99999999999888874 4567899999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEE------EeecCCCCccccc
Q psy8748 1969 TSSWDQFVKVWQESNTIVWKVL------KVYNLEKKTIFCV 2003 (2004)
Q Consensus 1969 SgS~DGtIrIWdlstg~l~k~I------k~~~~h~~~VtsV 2003 (2004)
+|+.||.|++||+.+++....+ .....|.+.|+++
T Consensus 1144 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 1184 (1249)
T 3sfz_A 1144 TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184 (1249)
T ss_dssp EEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEE
T ss_pred EEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEE
Confidence 9999999999999988654332 1224566666553
No 38
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.3e-33 Score=325.77 Aligned_cols=287 Identities=24% Similarity=0.424 Sum_probs=253.7
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..+|.+.|++++|+|+|++||+ |+.||+|++|+..+ ++.
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s-~~~dg~i~iw~~~~-------------~~~--------------------------- 57 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLAS-SSADKLIKIWGAYD-------------GKF--------------------------- 57 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTT-------------CCE---------------------------
T ss_pred EcccCCcEEEEEECCCCCEEEE-eeCCCeEEEEeCCC-------------ccc---------------------------
Confidence 3468899999999999999999 99999999999866 111
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
...+.+|...|.+++|+|++++|++|
T Consensus 58 ------------------------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~ 83 (312)
T 4ery_A 58 ------------------------------------------------------EKTISGHKLGISDVAWSSDSNLLVSA 83 (312)
T ss_dssp ------------------------------------------------------EEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ------------------------------------------------------chhhccCCCceEEEEEcCCCCEEEEE
Confidence 12345688999999999999999999
Q ss_pred eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE
Q psy8748 1711 SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf 1790 (2004)
+.||.|++||+.+++.+..+.+|...|.+++|+|+++++++|+.||.|++||+.++ +....+..|...+.++.|
T Consensus 84 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~ 157 (312)
T 4ery_A 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------KCLKTLPAHSDPVSAVHF 157 (312)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------EEEEEecCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999754 456677889999999999
Q ss_pred eCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCe
Q psy8748 1791 IDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADV 1869 (2004)
Q Consensus 1791 sdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~I 1869 (2004)
+++ ..+++++.||.|++||+.+++........+...+.+++|+|+++++++++.||.|++||+++++.+..+.+|...+
T Consensus 158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 237 (312)
T 4ery_A 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 237 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSS
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCce
Confidence 865 5688999999999999999988877767778889999999999999999999999999999999999998887654
Q ss_pred EE--EEE-eCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEECC
Q psy8748 1870 NS--VCF-HPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS--DDNNVHVWDLL 1940 (2004)
Q Consensus 1870 ts--Iaf-SPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS--sDGsIrIWDL~ 1940 (2004)
.+ ..+ .+++.++++|+.||.|++||+.+++.+..+ ..|...|.+++|+|+++++++++ .||+|++|+..
T Consensus 238 ~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh--hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 33 233 367889999999999999999999988887 45668899999999999999987 69999999863
No 39
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-34 Score=349.61 Aligned_cols=291 Identities=20% Similarity=0.326 Sum_probs=248.5
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|.+.|++++|+|+|++||| |+.||+|+|||..+ +..
T Consensus 63 ~gH~~~V~~~~~sp~~~~l~s-~s~D~~v~iWd~~~-------------~~~---------------------------- 100 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKNWIVS-ASQDGRLIVWNALT-------------SQK---------------------------- 100 (380)
T ss_dssp CCCSSCEEEEEECTTSSCEEE-EETTSEEEEEETTT-------------TEE----------------------------
T ss_pred cccccEEEEEEEcCCCCEEEE-EeCCCeEEEEECCC-------------Ccc----------------------------
Confidence 468999999999999999999 99999999999877 221
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
...+.+|...|.+++|+|+|++|++|+
T Consensus 101 -----------------------------------------------------~~~~~~h~~~v~~~~~s~~g~~las~~ 127 (380)
T 3iz6_a 101 -----------------------------------------------------THAIKLHCPWVMECAFAPNGQSVACGG 127 (380)
T ss_dssp -----------------------------------------------------EEEEECCCTTCCCCEECTTSSEEEECC
T ss_pred -----------------------------------------------------ceEEecCCCCEEEEEECCCCCEEEEee
Confidence 223456888999999999999999999
Q ss_pred CCCeEEEEECCCCc-------eEEEeeCCCCceEEEEEecC-CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEE-----
Q psy8748 1712 LDGKLIIWDTWTGN-------KTQVIPLRSAWVMSVAFAQS-GNFVACGGMDNMCTVYDLNNRDSTGAAKVIREL----- 1778 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk-------~l~ti~~Ht~~ItsLafSPd-g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl----- 1778 (2004)
.|+.+++||+.+.. ....+.+|.+.|.++.|+|+ +..+++|+.||.|++||+.++. ....+
T Consensus 128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~------~~~~~~~~~~ 201 (380)
T 3iz6_a 128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ------RISIFGSEFP 201 (380)
T ss_dssp SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC------EEEEECCCSS
T ss_pred CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc------EEEEeecccC
Confidence 99999999987532 34557889999999999997 4579999999999999998653 22333
Q ss_pred ecCccceeeeEEe--CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1779 LGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK 1856 (2004)
Q Consensus 1779 ~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~ 1856 (2004)
.+|...+.++.+. +++.+++|+.||.|++||++........+.+|.+.|.+++|+|++++|++|+.||+|++||++++
T Consensus 202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 5688889999986 45679999999999999998554444566789999999999999999999999999999999999
Q ss_pred eEEEEEecCCC-------CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC--CCCCCCeEEEEEcCCCCEEEE
Q psy8748 1857 KCVQTFFGHEA-------DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP--PNKNSGFTSCAVSSSGRYIFC 1927 (2004)
Q Consensus 1857 k~I~tl~~h~s-------~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~--~~~~s~ItsLafSPdG~~LaS 1927 (2004)
+.+..+..+.. .|.+++|+|+|+++++|+.||.|++||+.+++....+.. ..|...|.+++|+|+|++|++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 361 (380)
T 3iz6_a 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361 (380)
T ss_dssp EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence 98888765432 489999999999999999999999999998888776632 457788999999999999999
Q ss_pred EeCCCeEEEEECCCCe
Q psy8748 1928 GSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1928 GSsDGsIrIWDL~tge 1943 (2004)
|+.||+|++|++...+
T Consensus 362 gs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 362 GSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ECTTSCEEEEECCSSS
T ss_pred eeCCCCEEEEecCCCc
Confidence 9999999999986543
No 40
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.5e-34 Score=344.75 Aligned_cols=290 Identities=20% Similarity=0.264 Sum_probs=238.4
Q ss_pred ccccccceeEEEEeCCCCEEEEEeC------CCeEEEEECCCCceE----EEeeCCCCceEEEEEecCCCEEEEeecCCe
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSL------DGKLIIWDTWTGNKT----QVIPLRSAWVMSVAFAQSGNFVACGGMDNM 1757 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~------DGtIrVWDl~Tgk~l----~ti~~Ht~~ItsLafSPdg~~LaSGS~DGt 1757 (2004)
..+|.+.|++++|||||++||+|+. ||.|++|+..++... .....|...|.+++|+|++.+ ++++.||.
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCE
Confidence 3579999999999999999999997 788999998776543 334568889999999999765 56778999
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
|++||+.+++.... ......+|...|.+++|+++ ..+++|+.||.|++||+++++.+.. +.+|...|.+++|++++
T Consensus 117 v~lWd~~~~~~~~~--~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~s~~~ 193 (357)
T 4g56_B 117 VELWEILEKESLLV--NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS-YNAHSSEVNCVAACPGK 193 (357)
T ss_dssp EEEC--------CC--CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTC
T ss_pred EEEeeccccceeEE--EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE-EcCCCCCEEEEEEccCC
Confidence 99999987542221 12345578999999999965 5688999999999999999987744 57899999999999987
Q ss_pred C-EEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeCC-CCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1837 Q-YFVTGSVDKSCKLWDFREKKCVQTFF--GHEADVNSVCFHPS-GLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1837 ~-~LaSGS~DGsIrIWDlrs~k~I~tl~--~h~s~ItsIafSPd-g~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
. ++++++.||.|++||+++++....+. .+...+.+++|+|+ +.+|++|+.|+.|++||+++++....+. .+...
T Consensus 194 ~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~ 271 (357)
T 4g56_B 194 DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQN 271 (357)
T ss_dssp SSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSC
T ss_pred CceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--cccee
Confidence 5 78999999999999999887665543 56678999999997 5689999999999999999999888874 56678
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q psy8748 1913 FTSCAVSSSG-RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP-NGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1913 ItsLafSPdG-~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSP-Dg~~LaSgS~DGtIrIWdlstg 1984 (2004)
|++++|+|++ ++|++|+.||+|+|||+.+++.+..+ +|.+.|++++|+| ++.+|++||.||+|++|++...
T Consensus 272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 272 ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999987 68999999999999999999887655 7999999999998 8999999999999999999764
No 41
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=341.39 Aligned_cols=289 Identities=18% Similarity=0.212 Sum_probs=237.3
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECC-----------CCceEEEeeCCCCceEEEEEecCCCEEEEeecCCe
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTW-----------TGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNM 1757 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~-----------Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGt 1757 (2004)
..|...|.+++|+|||++|++++ |+++++||.. ..........+...|.+++|+|++ .+++|+.||.
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 45778899999999999999887 6778888621 111111222356779999999985 6789999999
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
|++||+++++.. ........+|.+.|.+++|+++ ..+++|+.||.|++||+.+++.+. .+.+|.+.|.+++|++++
T Consensus 105 v~lWd~~~~~~~--~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~-~~~~h~~~V~~~~~~~~~ 181 (344)
T 4gqb_B 105 VELWELDENETL--IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS-SYRAHAAQVTCVAASPHK 181 (344)
T ss_dssp EEEEEECTTSSC--EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECSSC
T ss_pred EEEEeccCCCce--eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE-EEcCcCCceEEEEecCCC
Confidence 999999876421 2233456689999999999965 568999999999999999998874 457899999999999987
Q ss_pred C-EEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1837 Q-YFVTGSVDKSCKLWDFREKKCVQTFF--GHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1837 ~-~LaSGS~DGsIrIWDlrs~k~I~tl~--~h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
. ++++|+.||.|++||+++++....+. .+...+.+++|+| +++++++|+.||.|++||+++++.+..+. .|...
T Consensus 182 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~--~h~~~ 259 (344)
T 4gqb_B 182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA--VHSQC 259 (344)
T ss_dssp TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE--CCSSC
T ss_pred CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc--CCCCC
Confidence 4 78999999999999999998887764 4556799999999 45788999999999999999999988874 56688
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCe
Q psy8748 1913 FTSCAVSSSG-RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM-ALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1913 ItsLafSPdG-~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~-~LaSgS~DGtIrIWdlstg~ 1985 (2004)
|++++|+|+| ++|++|+.||+|++||+.+++.. .+.+|.+.|++++|+|++. +|++||.||+|++|++.+..
T Consensus 260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9999999998 58999999999999999988765 5689999999999999886 67799999999999998753
No 42
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.4e-32 Score=338.19 Aligned_cols=280 Identities=25% Similarity=0.415 Sum_probs=252.7
Q ss_pred cccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCC
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
.+.+|.+.|++++|+ ++++++|+.||+|++||+.+++....+.+|...|.++.|+ ++.+++|+.||.|++||+.++
T Consensus 154 ~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~ 229 (445)
T 2ovr_B 154 TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG 229 (445)
T ss_dssp ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC
Confidence 345799999999998 6799999999999999999999999999999999999996 678999999999999999754
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK 1846 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG 1846 (2004)
+....+.+|...+.++.+ ++..+++|+.||.|++||+++++.+.. ..+|...|.+++| +++++++|+.||
T Consensus 230 ------~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~--~~~~l~~~~~d~ 299 (445)
T 2ovr_B 230 ------QCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHT-LQGHTNRVYSLQF--DGIHVVSGSLDT 299 (445)
T ss_dssp ------CEEEEEECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTEEEEE-ECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred ------cEEEEEcCCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCCcEeEE-ecCCCCceEEEEE--CCCEEEEEeCCC
Confidence 456677889999999999 678899999999999999999887744 4688999999999 789999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC-CCCCCeEEEEEcCCCCEE
Q psy8748 1847 SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP-NKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~-~~~s~ItsLafSPdG~~L 1925 (2004)
.|++||+++++.+..+.+|...+.++.++ ++++++|+.||.|++||+++++....+... .+...|.+++|+ ++++
T Consensus 300 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 300 SIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp CEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred eEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence 99999999999999999999999988875 569999999999999999999998888543 366789999995 6899
Q ss_pred EEEeCCCeEEEEECCCCeeeEEE-----ccCCCCeEEEEEcCCCCEEEEEECCCe----EEEEECCCC
Q psy8748 1926 FCGSDDNNVHVWDLLKTTHNGVL-----SGHENRVTSISLSPNGMALVTSSWDQF----VKVWQESNT 1984 (2004)
Q Consensus 1926 aSGSsDGsIrIWDL~tge~l~tL-----~gHs~~VtsLaFSPDg~~LaSgS~DGt----IrIWdlstg 1984 (2004)
++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++.++++|+.||+ |.+||++..
T Consensus 376 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999999999999999999888 578899999999999999999999998 999999864
No 43
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.6e-33 Score=324.23 Aligned_cols=295 Identities=24% Similarity=0.378 Sum_probs=251.6
Q ss_pred CCCCCCCeEEEEEccC-CCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1551 PEPCKEQRNAVSFHAC-STLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPd-Gk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
..+|++.|++|+|+|+ |++||| |+.||+|+|||+.. ...
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S-~s~D~~i~vWd~~~-------------~~~-------------------------- 73 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILS-ASRDKTIIMWKLTR-------------DET-------------------------- 73 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEE-EETTSCEEEEEECC-------------SSS--------------------------
T ss_pred ECCccCCEEEEEEeCCCCCEEEE-EcCCCeEEEEECCC-------------CCc--------------------------
Confidence 3579999999999998 689999 99999999999877 000
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVS 1709 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LAS 1709 (2004)
....+...+.+|.+.|++++|+|+|++|++
T Consensus 74 --------------------------------------------------~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 74 --------------------------------------------------NYGIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp --------------------------------------------------CSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred --------------------------------------------------ccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 000124567889999999999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeE
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCR 1789 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssva 1789 (2004)
|+.||.|++|+...+........+...+....++++++.+++|+.||.+++||.... ........+|...+..+.
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~-----~~~~~~~~~~~~~v~~~~ 178 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-----CKYTVQDESHSEWVSCVR 178 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-----EEEEECSSSCSSCEEEEE
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC-----ceEEEEeccccCcccceE
Confidence 999999999999999999888889999999999999999999999999999998643 234455667888899998
Q ss_pred EeCC---CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC
Q psy8748 1790 FIDD---TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE 1866 (2004)
Q Consensus 1790 fsdd---~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~ 1866 (2004)
|..+ ..+++++.|+.|++||+.+++... ...+|.+.|++++|+|++++|++|+.||.|++||+++.+.+..+.. .
T Consensus 179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~ 256 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKT-NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-G 256 (340)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-S
T ss_pred EccCCCCcEEEEEcCCCEEEEEECCCCceee-EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-C
Confidence 8743 347889999999999999988774 4568999999999999999999999999999999999998888865 5
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC-------CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1867 ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP-------PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1867 s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~-------~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
..|.+++|+|++.++ +++.|+.|++||++++.....+.. ..+...|++++|+|+|++|++|+.||.|+|||+
T Consensus 257 ~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 257 DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 689999999988655 556799999999998877666532 346678999999999999999999999999999
Q ss_pred CCCe
Q psy8748 1940 LKTT 1943 (2004)
Q Consensus 1940 ~tge 1943 (2004)
.+|+
T Consensus 336 ~tGt 339 (340)
T 4aow_A 336 TIGT 339 (340)
T ss_dssp EC--
T ss_pred CCcC
Confidence 8875
No 44
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-33 Score=322.46 Aligned_cols=291 Identities=24% Similarity=0.359 Sum_probs=260.4
Q ss_pred cccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1681 KLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1681 k~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
..+..+.+.+|.+.|++++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+|+++++++|+.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 34567889999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC-CCCEE
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP-DGQYF 1839 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP-dg~~L 1839 (2004)
|++.... .......+.+|...+.++.| +++.+++++.||.|++|| .++.. .....|...+.+++|+| +++++
T Consensus 86 ~~~~~~~---~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~~~~-~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 86 VPLFATS---GEDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK--EGSLV-YNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp EETTCCT---TSCC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--TTEEE-EEEECCSSCEEEEEEEETTTTEE
T ss_pred EEeeecC---CCCcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--CCcEE-EecccCCCceeEEEEccCCCCEE
Confidence 9997643 33445667889999999999 677899999999999999 44444 44567899999999998 89999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEE
Q psy8748 1840 VTGSVDKSCKLWDFREKKCVQTFFG-HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAV 1918 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs~k~I~tl~~-h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLaf 1918 (2004)
++++.||.|++|| ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+. .+...+.+++|
T Consensus 159 ~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~ 233 (313)
T 3odt_A 159 LTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE--GHESFVYCIKL 233 (313)
T ss_dssp EEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEE
T ss_pred EEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh--cCCceEEEEEE
Confidence 9999999999999 4566677776 899999999999998 9999999999999999999888874 56688999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1919 SPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
+|++ .+++|+.||.|++||+.+++....+..|...|.+++|+|++. +++++.||.|++|++.+++.
T Consensus 234 ~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 234 LPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp CTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred ecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 9999 588999999999999999999999999999999999999998 66799999999999998754
No 45
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-33 Score=338.81 Aligned_cols=297 Identities=18% Similarity=0.236 Sum_probs=261.7
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc------eEEEeeCCCCceEEEEEecC----C---CEEE
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN------KTQVIPLRSAWVMSVAFAQS----G---NFVA 1750 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk------~l~ti~~Ht~~ItsLafSPd----g---~~La 1750 (2004)
....+.+|.+.|++++|+| ++|++|+.||.|++||+.+++ ....+..|...|.+++|+|+ + ++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 4567889999999999998 799999999999999999988 78888999999999999999 9 9999
Q ss_pred EeecCCeEEEEEcCCCCCCCcceEEEEEecC-----ccceeeeEEe----CC-Cc-EEEeecCCeEEEEECCC------C
Q psy8748 1751 CGGMDNMCTVYDLNNRDSTGAAKVIRELLGY-----EGFLSSCRFI----DD-TT-LLTGSGDMKIVTWNLET------G 1813 (2004)
Q Consensus 1751 SGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh-----~~~Vssvafs----dd-~~-LlSgS~DGtI~IWDl~t------g 1813 (2004)
+++.||.|++|++..+... .......+..| ...+.++.|. ++ .. +++++.||.|++||+.+ +
T Consensus 86 s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDET-KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEETTSCEEEEEEEECTTT-CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEcCCCCEEEEEccCCccc-ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999865321 11225566677 5899999998 54 56 88899999999999988 5
Q ss_pred ceeE-----Eee------ccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEec---C---CCCeEEEEEeC
Q psy8748 1814 QRIH-----EVA------QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG---H---EADVNSVCFHP 1876 (2004)
Q Consensus 1814 ~~i~-----~il------~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~---h---~s~ItsIafSP 1876 (2004)
+.+. .+. ..|...|.+++|+|++ ++++++.||.|++||+++++.+..+.. | ...|.+++|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence 5543 332 4578899999999999 999999999999999999999999988 8 99999999999
Q ss_pred CCCEEEEEECC---CeEEEEEccCCceeEEEcCCC-----------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q psy8748 1877 SGLAFATGSED---KTARLFDIRADQQIATYLPPN-----------KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT 1942 (2004)
Q Consensus 1877 dg~~LaSgS~D---GtIrIWDLrtgk~i~t~~~~~-----------~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg 1942 (2004)
++++|++++.| |.|++||+++++.+..+.... +...|.+++|+|++++|++|+.||.|++||+.++
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999 999999999999888875321 6688999999999999999999999999999999
Q ss_pred eeeEEEc------cC---------------CCCeEEEEEcCCC----------CEEEEEECCCeEEEEECCCC
Q psy8748 1943 THNGVLS------GH---------------ENRVTSISLSPNG----------MALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1943 e~l~tL~------gH---------------s~~VtsLaFSPDg----------~~LaSgS~DGtIrIWdlstg 1984 (2004)
+.+..+. +| ...|++++|+|++ ++|++|+.||.|++|++.+|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999998 88 9999999999998 79999999999999999876
No 46
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.4e-33 Score=363.21 Aligned_cols=329 Identities=21% Similarity=0.309 Sum_probs=286.2
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|.+.|++++|||+|++||+ |+.||+|+|||+.+ ++.
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~-~~~~g~v~iwd~~~-------------~~~---------------------------- 47 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLT-TLYSGRVEIWNYET-------------QVE---------------------------- 47 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEE-EETTSEEEEEETTT-------------TEE----------------------------
T ss_pred ecCCCceEEEEECCCCCEEEE-EeCCCEEEEEECCC-------------Cce----------------------------
Confidence 458889999999999999999 99999999999877 221
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
...+.+|.+.|++++|+|++++|++|+
T Consensus 48 -----------------------------------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~ 74 (814)
T 3mkq_A 48 -----------------------------------------------------VRSIQVTETPVRAGKFIARKNWIIVGS 74 (814)
T ss_dssp -----------------------------------------------------EEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred -----------------------------------------------------EEEEecCCCcEEEEEEeCCCCEEEEEe
Confidence 223456889999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.||.|++||+.+++.+..+.+|.+.|.+++|+|+++++++|+.||.|++|+++++ ......+.+|...+.++.|+
T Consensus 75 ~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-----~~~~~~~~~~~~~v~~~~~~ 149 (814)
T 3mkq_A 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-----WALEQTFEGHEHFVMCVAFN 149 (814)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT-----SEEEEEEECCSSCEEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC-----ceEEEEEcCCCCcEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999753 25567788899999999999
Q ss_pred C--CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC--CCCEEEEEECCCeEEEEECCCCeEEEEEecCCC
Q psy8748 1792 D--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP--DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA 1867 (2004)
Q Consensus 1792 d--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP--dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s 1867 (2004)
+ +..+++++.||.|++||+.++.........+...+.+++|+| +++++++|+.||.|++||+++++.+..+.+|..
T Consensus 150 p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 229 (814)
T 3mkq_A 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229 (814)
T ss_dssp TTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 7 457999999999999999988877666666668999999999 999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeee
Q psy8748 1868 DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR--YIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1868 ~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~--~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
.|.+++|+|+++++++++.||.|++||+.+++....+. .+...+.+++|+|+|. ++++| .++.+.+|++..+...
T Consensus 230 ~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 306 (814)
T 3mkq_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN--VGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPT 306 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC--CSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCC
T ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCce
Confidence 99999999999999999999999999999999888874 4457899999999987 45555 5667888887543221
Q ss_pred EE-------------------------------------------EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1946 GV-------------------------------------------LSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1946 ~t-------------------------------------------L~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
.. +..+...+.+++|+|+|+++++++ ||.+.+|++.
T Consensus 307 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~ 385 (814)
T 3mkq_A 307 LSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTAL 385 (814)
T ss_dssp EEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred eEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECc
Confidence 11 123445688999999999999998 8999999986
Q ss_pred CC
Q psy8748 1983 NT 1984 (2004)
Q Consensus 1983 tg 1984 (2004)
..
T Consensus 386 ~~ 387 (814)
T 3mkq_A 386 AW 387 (814)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2e-32 Score=337.36 Aligned_cols=284 Identities=18% Similarity=0.259 Sum_probs=244.8
Q ss_pred cccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEe--cCCCEEEEeecCCeEEEEEcC
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFA--QSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafS--Pdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
.+.+|.+.|++++|++++ ++++|+.||+|++||+.+++....+.+|...|.+++|+ ++++++++|+.||.|++||+.
T Consensus 157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence 355799999999999988 99999999999999999999999999999999999998 477899999999999999998
Q ss_pred CCCCCCc-----------------ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCe
Q psy8748 1765 NRDSTGA-----------------AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDV 1827 (2004)
Q Consensus 1765 t~~~~~~-----------------~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~I 1827 (2004)
....... ........+|...+.++. .++..+++++.||.|++||+.+++.+.. +.+|...|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~v 313 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS-GHGNIVVSGSYDNTLIVWDVAQMKCLYI-LSGHTDRI 313 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE-EETTEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCE
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCCE
Confidence 7542211 012556777888888774 3567899999999999999999888744 46899999
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC
Q psy8748 1828 VSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP 1907 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~ 1907 (2004)
.+++|+|+++++++|+.||.|++||+++++.+..+.+|...|.+++|+ +.++++++.||.|++||++++.......
T Consensus 314 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-- 389 (464)
T 3v7d_B 314 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-- 389 (464)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec--
Confidence 999999999999999999999999999999999999999999999997 5799999999999999999888776663
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1908 NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGV-LSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1908 ~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~t-L~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
+...+..++|+++++++++|+ ||.|++||+.+++.+.. +..|.+.|.+++|+ ++.++++++.||.+.+|-
T Consensus 390 -~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 390 -HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp -CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred -CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 345677889999999999998 89999999999999876 67789999999997 445566667787766554
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-32 Score=334.39 Aligned_cols=303 Identities=22% Similarity=0.324 Sum_probs=246.4
Q ss_pred CCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCc
Q psy8748 1553 PCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSS 1632 (2004)
Q Consensus 1553 ~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgS 1632 (2004)
.|...|+|++|||||++||+ |+ |+++++|++.+ ++....+.++...... +
T Consensus 62 ~h~~~V~~v~fspdg~~la~-g~-~~~v~i~~~~~-------------g~~~~~l~~~~~~~~~------------~--- 111 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLAT-GC-NKTTQVYRVSD-------------GSLVARLSDDSAANKD------------P--- 111 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEE-EC-BSCEEEEETTT-------------CCEEEEECC-----------------------
T ss_pred CCCCEEEEEEECCCCCEEEE-Ec-CCcEEEEEecC-------------CCEEEEecCccccccc------------c---
Confidence 48889999999999999999 76 78999999988 5544444331110000 0
Q ss_pred chhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeC
Q psy8748 1633 INIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSL 1712 (2004)
Q Consensus 1633 idi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~ 1712 (2004)
... .......+...|++++|+|+|++|++|+.
T Consensus 112 ----------------~~~--------------------------------~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 112 ----------------ENL--------------------------------NTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp ---------------------------------------------------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred ----------------ccc--------------------------------cccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 000 00011234567999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC
Q psy8748 1713 DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID 1792 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd 1792 (2004)
||.|++||+.+++....+.+|...|.+++|+|++++|++|+.||.|++||+.++ .....+ .+...+.++.+++
T Consensus 144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~------~~~~~~-~~~~~v~~~~~~~ 216 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG------QCSLTL-SIEDGVTTVAVSP 216 (393)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------EEEEEE-ECSSCEEEEEECS
T ss_pred CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC------eeEEEE-EcCCCcEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999764 223333 3456788888875
Q ss_pred --CCcEEEeecCCeEEEEECCCCceeEEee------ccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCC--------
Q psy8748 1793 --DTTLLTGSGDMKIVTWNLETGQRIHEVA------QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK-------- 1856 (2004)
Q Consensus 1793 --d~~LlSgS~DGtI~IWDl~tg~~i~~il------~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~-------- 1856 (2004)
+..+++|+.||.|++||..++..+.... .+|...|.+++|+|+++++++|+.||.|++||+++.
T Consensus 217 ~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 217 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccC
Confidence 4579999999999999999988765442 478899999999999999999999999999999753
Q ss_pred ----eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC------CCCEEE
Q psy8748 1857 ----KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS------SGRYIF 1926 (2004)
Q Consensus 1857 ----k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP------dG~~La 1926 (2004)
.+...+.+|...|.+++|+|++.+|++|+.||.|++||.++++.+..+. .|...|.+++|++ ++++|+
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~--~h~~~v~~v~~~~~~~~~p~~~~l~ 374 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--GHRNSVISVAVANGSSLGPEYNVFA 374 (393)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC--CCCCCEEEEEecCCcCcCCCCCEEE
Confidence 3456778999999999999999999999999999999999999887774 5668899999986 688999
Q ss_pred EEeCCCeEEEEECCCC
Q psy8748 1927 CGSDDNNVHVWDLLKT 1942 (2004)
Q Consensus 1927 SGSsDGsIrIWDL~tg 1942 (2004)
+|+.||+|++|++...
T Consensus 375 sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 375 TGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEETTSEEEEEEEEEC
T ss_pred EECCCCcEEECccccc
Confidence 9999999999997543
No 49
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.3e-33 Score=327.48 Aligned_cols=290 Identities=18% Similarity=0.218 Sum_probs=253.6
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
+..|.++|++++|+|++++|++|+.||.|++||+.+++ ....+.+|...|.+++|+|+++++++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45599999999999999999999999999999999987 8888999999999999999999999999999999999975
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCce---eEEeeccccCCeEEEEECCCCCEEEE
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQR---IHEVAQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~---i~~il~~h~~~ItsLafSPdg~~LaS 1841 (2004)
++ .........|...+.++.|+++ ..+++++.||.|++||++.+.. .......|...|.+++|+|+++++++
T Consensus 84 ~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 84 RT----WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp TE----EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred Ce----eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 42 2233445678889999999855 5688999999999999988763 33445678899999999999999999
Q ss_pred EECCCeEEEEEC------------------CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEE
Q psy8748 1842 GSVDKSCKLWDF------------------REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIAT 1903 (2004)
Q Consensus 1842 GS~DGsIrIWDl------------------rs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t 1903 (2004)
|+.||.|++||+ ..++.+..+..|...|.+++|+|+++++++++.||.|++||+++++.+..
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 239 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 239 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE
Confidence 999999999995 46788888989999999999999999999999999999999999998888
Q ss_pred EcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--Cee--------------------------------e----
Q psy8748 1904 YLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK--TTH--------------------------------N---- 1945 (2004)
Q Consensus 1904 ~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t--ge~--------------------------------l---- 1945 (2004)
+. .+...+.+++|+|+++++++| .||.|++|++.+ +.. .
T Consensus 240 ~~--~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (372)
T 1k8k_C 240 LA--SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA 316 (372)
T ss_dssp EE--CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred Ec--cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcc
Confidence 85 455789999999999998888 999999999987 421 0
Q ss_pred --EEE-ccCCCCeEEEEEc-CCC---CEEEEEECCCeEEEEECCCC
Q psy8748 1946 --GVL-SGHENRVTSISLS-PNG---MALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1946 --~tL-~gHs~~VtsLaFS-PDg---~~LaSgS~DGtIrIWdlstg 1984 (2004)
..+ .+|.+.|++++|+ ++| .+|++|+.||.|++|++.++
T Consensus 317 ~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 317 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 223 4899999999976 666 99999999999999999765
No 50
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-32 Score=330.05 Aligned_cols=291 Identities=18% Similarity=0.282 Sum_probs=244.5
Q ss_pred cccccccccccceeEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEee--CCCCceEEEEEec-CCCEEEEeecCCeE
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDS-RHCVSGSLDGKLIIWDTWTGNKTQVIP--LRSAWVMSVAFAQ-SGNFVACGGMDNMC 1758 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG-~~LASGS~DGtIrVWDl~Tgk~l~ti~--~Ht~~ItsLafSP-dg~~LaSGS~DGtI 1758 (2004)
.....+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| +++++++++.||.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 3456788999999999999999 999999999999999999998887775 6999999999999 78999999999999
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~ 1837 (2004)
++||+... .........++...+.++.|+++ ..+++++.||.|++||++ ++.+ ..+..|...|.+++|+|+++
T Consensus 144 ~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~-~~~~~h~~~v~~~~~~~~~~ 217 (383)
T 3ei3_B 144 TLRDFSGS----VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEI-FKEKLHKAKVTHAEFNPRCD 217 (383)
T ss_dssp EEEETTSC----EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEE-EEEECSSSCEEEEEECSSCT
T ss_pred EEEECCCC----ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEE-EEeccCCCcEEEEEECCCCC
Confidence 99999742 22222333344578999999965 568899999999999994 5554 34468999999999999999
Q ss_pred -EEEEEECCCeEEEEECCC----CeEEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccCCceeEEEcCCC---
Q psy8748 1838 -YFVTGSVDKSCKLWDFRE----KKCVQTFFGHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRADQQIATYLPPN--- 1908 (2004)
Q Consensus 1838 -~LaSGS~DGsIrIWDlrs----~k~I~tl~~h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~--- 1908 (2004)
++++|+.||.|++||+++ +..+..+ +|...|.+++|+| ++.+|++++.||.|++||+++++....+..+.
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 296 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ 296 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCC
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccc
Confidence 999999999999999987 6666666 7999999999999 99999999999999999999887765553221
Q ss_pred --C----------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc--CCCCeEEEEEcCCCCEEEEEECCC
Q psy8748 1909 --K----------NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG--HENRVTSISLSPNGMALVTSSWDQ 1974 (2004)
Q Consensus 1909 --~----------~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g--Hs~~VtsLaFSPDg~~LaSgS~DG 1974 (2004)
+ ...+..++|+|+|++ +|+.||.|++||+.+++.+..+.+ |...+..++|+|++++|++|+ ||
T Consensus 297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence 1 123445666677666 677899999999999999999987 567788889999999999998 99
Q ss_pred eEEEEECCC
Q psy8748 1975 FVKVWQESN 1983 (2004)
Q Consensus 1975 tIrIWdlst 1983 (2004)
.|++|++++
T Consensus 374 ~i~iw~~~~ 382 (383)
T 3ei3_B 374 NILIWNRED 382 (383)
T ss_dssp EEEEEECC-
T ss_pred cEEEEecCC
Confidence 999999975
No 51
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-32 Score=323.72 Aligned_cols=248 Identities=18% Similarity=0.255 Sum_probs=200.0
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC-------CceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT-------GNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T-------gk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
+|.+.|++++|+|++++|++|+.||+|++||... .+....+.+|...|.+++|+|++++|++|+.||.|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 3999999999999999999999999999999853 356677889999999999999999999999999999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCc-eeEEeeccccCCeEEEEECCC--CCE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQ-RIHEVAQAHIGDVVSISLSPD--GQY 1838 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~-~i~~il~~h~~~ItsLafSPd--g~~ 1838 (2004)
+.... ........+.+|...+.++.|+++ ..+++++.||.|++||..++. .....+.+|.+.|.+++|+|+ +.+
T Consensus 136 ~~~~~--~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 136 TDESG--EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp CCTTC--CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred ccCCC--CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE
Confidence 95321 134566778899999999999865 568999999999999987763 223456789999999999998 679
Q ss_pred EEEEECCCeEEEEECCCC--------eEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce--eEEEcCC
Q psy8748 1839 FVTGSVDKSCKLWDFREK--------KCVQTFFG-HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ--IATYLPP 1907 (2004)
Q Consensus 1839 LaSGS~DGsIrIWDlrs~--------k~I~tl~~-h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~--i~t~~~~ 1907 (2004)
+++|+.||+|++||++.+ .....+.. |...|.+++|++++ ++++++.||.|++||..++.. .... ..
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~ 291 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-AL 291 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SC
T ss_pred EEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cc
Confidence 999999999999998754 34445554 88999999999765 899999999999999987742 2232 23
Q ss_pred CCCC-CeEEEEEcC--CCCEEEEEeCCCeEEEEECCC
Q psy8748 1908 NKNS-GFTSCAVSS--SGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1908 ~~~s-~ItsLafSP--dG~~LaSGSsDGsIrIWDL~t 1941 (2004)
.|.. .|.+++|+| ++++|++|+.||+|++||+.+
T Consensus 292 ~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 292 CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 4444 799999999 789999999999999999864
No 52
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.8e-32 Score=354.94 Aligned_cols=290 Identities=23% Similarity=0.360 Sum_probs=251.0
Q ss_pred ccccccccccceeEEEEeCCC-CEEEEEeCCCeEEEEECCCC-----ceEEEeeCCCCceEEEEEecCCCEEEEeecCCe
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDS-RHCVSGSLDGKLIIWDTWTG-----NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNM 1757 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG-~~LASGS~DGtIrVWDl~Tg-----k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGt 1757 (2004)
....+++|++.|++++|+|++ ++|+||+.||+|++||+.++ .....+.+|...|.+++|+|++++|++|+.||.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 345789999999999999864 79999999999999998763 345678899999999999999999999999999
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEe--eccccCCeEEEEECC
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEV--AQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~i--l~~h~~~ItsLafSP 1834 (2004)
|++||+.++ .....+.+|...|.++.|+++ ..+++++.|+.|++||.......... ..+|...|.+++|+|
T Consensus 454 v~vwd~~~~------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 454 LRLWDLAAG------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp EEEEETTTT------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred EEEEECCCC------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 999999754 566778899999999999855 56999999999999998755433211 246888999999999
Q ss_pred CC--CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1835 DG--QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1835 dg--~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
++ ..+++|+.||.|++||+++++....+.+|...|.+++|+|+++++++|+.||.|++||+++++.+..+. +...
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~---~~~~ 604 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE---ANSV 604 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB---CSSC
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec---CCCc
Confidence 86 689999999999999999999999999999999999999999999999999999999999998876653 3467
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCC-------------------CCeEEEEEcCCCCEEEEEECC
Q psy8748 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHE-------------------NRVTSISLSPNGMALVTSSWD 1973 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs-------------------~~VtsLaFSPDg~~LaSgS~D 1973 (2004)
+.+++|+|++.++++++ ++.|++||+.++..+..+..+. ..+++++|+|+|++|++|+.|
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D 683 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD 683 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC
Confidence 99999999999888775 5569999999999887775332 137899999999999999999
Q ss_pred CeEEEEECCC
Q psy8748 1974 QFVKVWQESN 1983 (2004)
Q Consensus 1974 GtIrIWdlst 1983 (2004)
|.|++|++..
T Consensus 684 g~i~iW~i~~ 693 (694)
T 3dm0_A 684 GVIRVWGIGR 693 (694)
T ss_dssp SEEEEEEC--
T ss_pred CeEEEEeccC
Confidence 9999999863
No 53
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-31 Score=312.56 Aligned_cols=295 Identities=19% Similarity=0.298 Sum_probs=255.1
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|++.|++++|+|+|++||+ |+.||.|++||+.+ ++.
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~~-------------~~~---------------------------- 66 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFS-CSKDSSASVWYSLN-------------GER---------------------------- 66 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEE-EESSSCEEEEETTT-------------CCE----------------------------
T ss_pred EEeeceEEEEEEcCCCCEEEE-EeCCCEEEEEeCCC-------------chh----------------------------
Confidence 458899999999999999999 99999999999877 111
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
...+.+|.+.|++++|+|++++|++++
T Consensus 67 -----------------------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~ 93 (369)
T 3zwl_B 67 -----------------------------------------------------LGTLDGHTGTIWSIDVDCFTKYCVTGS 93 (369)
T ss_dssp -----------------------------------------------------EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -----------------------------------------------------hhhhhhcCCcEEEEEEcCCCCEEEEEe
Confidence 223456999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC-----CeEEEEEcCCCCCCCcc-----eEEEEEecC
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD-----NMCTVYDLNNRDSTGAA-----KVIRELLGY 1781 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D-----GtIrVWDl~t~~~~~~~-----k~i~sl~gh 1781 (2004)
.||.|++||+.+++....+. +...|.+++|+|+++++++++.+ |.|++|++......... ........+
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 94 ADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp TTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred CCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 99999999999999999888 88899999999999999999999 99999999865432211 122344455
Q ss_pred cc--ceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1782 EG--FLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC 1858 (2004)
Q Consensus 1782 ~~--~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~ 1858 (2004)
.. .+.++.|+++ ..+++++.||.|++||+.++.........|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence 55 8899999854 56889999999999999985444456678899999999999999999999999999999999998
Q ss_pred EEEEecCCCCeEEEEEeCCCCEEEEEECCC--------------eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1859 VQTFFGHEADVNSVCFHPSGLAFATGSEDK--------------TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1859 I~tl~~h~s~ItsIafSPdg~~LaSgS~DG--------------tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
+..+. +...+.+++|+|+++++++++.++ .+++||..+++....+. .+...|.+++|+|+|++
T Consensus 253 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~ 329 (369)
T 3zwl_B 253 LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ--GHFGPLNTVAISPQGTS 329 (369)
T ss_dssp EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE--CCSSCEEEEEECTTSSE
T ss_pred eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee--cccCcEEEEEECCCCCE
Confidence 88876 788999999999999999999988 89999999999888874 56688999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeee
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l 1945 (2004)
|++|+.||.|++|++.++...
T Consensus 330 l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 330 YASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp EEEEETTSEEEEEEECHHHHT
T ss_pred EEEEcCCCeEEEEECccccch
Confidence 999999999999999765443
No 54
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=320.98 Aligned_cols=295 Identities=16% Similarity=0.230 Sum_probs=246.3
Q ss_pred cccccccccceeEEEEeCCCCEE-EEEeC---CCeEEEEECCCCceEEEe-eCCCCceEEEEEecC---CCEEEEeecCC
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHC-VSGSL---DGKLIIWDTWTGNKTQVI-PLRSAWVMSVAFAQS---GNFVACGGMDN 1756 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~L-ASGS~---DGtIrVWDl~Tgk~l~ti-~~Ht~~ItsLafSPd---g~~LaSGS~DG 1756 (2004)
...+.+|.+.|++++|+|++..+ ++|+. ||.|++||+.+++..... ..|...|.+++|+|+ ++++++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34567899999999999999755 45655 899999999998876543 368899999999998 69999999999
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-------CCCcEEEeecCCeEEEEECCCCceeEEeeccccC----
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-------DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIG---- 1825 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-------dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~---- 1825 (2004)
.|++|++..+. .....+.+|...+.++.|. ++..+++++.||.|++||+.++.........+.+
T Consensus 91 ~i~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 91 NLHIWNLEAPE-----MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp CEEEECTTSCS-----SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred eEEEEeCCCCC-----ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 99999998653 2456677899999999664 3557999999999999999988733333334333
Q ss_pred CeEEEE----ECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeC---CCCEEEEEECCCeEEEEEccCC
Q psy8748 1826 DVVSIS----LSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHP---SGLAFATGSEDKTARLFDIRAD 1898 (2004)
Q Consensus 1826 ~ItsLa----fSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSP---dg~~LaSgS~DGtIrIWDLrtg 1898 (2004)
.+.+++ |+++++++++++.||.|++||+++++.... ..|...|.+++|+| ++.++++++.||.|++||++++
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence 789998 788999999999999999999999887544 57889999999999 9999999999999999999877
Q ss_pred ceeEEEc---CCCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-------------------eeeEEEccCCCCe
Q psy8748 1899 QQIATYL---PPNKNSGFTSCAVSSSGR-YIFCGSDDNNVHVWDLLKT-------------------THNGVLSGHENRV 1955 (2004)
Q Consensus 1899 k~i~t~~---~~~~~s~ItsLafSPdG~-~LaSGSsDGsIrIWDL~tg-------------------e~l~tL~gHs~~V 1955 (2004)
+....+. ...+...|.+++|+|+++ ++++|+.||.|++||+.++ +.+..+.+|.+.|
T Consensus 245 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v 324 (357)
T 3i2n_A 245 HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI 324 (357)
T ss_dssp ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE
T ss_pred CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe
Confidence 6554432 125678899999999998 8999999999999999753 4667788999999
Q ss_pred EEEEEcCCCCEEE-EEECCCeEEEEECCCCe
Q psy8748 1956 TSISLSPNGMALV-TSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1956 tsLaFSPDg~~La-SgS~DGtIrIWdlstg~ 1985 (2004)
++++|+|++++|+ +++.||.|++|++.+..
T Consensus 325 ~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 325 SSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred eEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999999999998 89999999999998753
No 55
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-32 Score=363.39 Aligned_cols=375 Identities=14% Similarity=0.088 Sum_probs=265.3
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
|+..|++++|+| |++||+ |+.|++|++||+.+ ++++..+.. ...+ ..+.+.|++..
T Consensus 57 ~~~~V~~l~fsp-g~~L~S-~s~D~~v~lWd~~~-------------~~~~~~~~~-~~~V--------~~v~~sp~g~~ 112 (902)
T 2oaj_A 57 DRSAIKEMRFVK-GIYLVV-INAKDTVYVLSLYS-------------QKVLTTVFV-PGKI--------TSIDTDASLDW 112 (902)
T ss_dssp SCCCEEEEEEET-TTEEEE-EETTCEEEEEETTT-------------CSEEEEEEC-SSCE--------EEEECCTTCSE
T ss_pred CCCCEEEEEEcC-CCEEEE-EECcCeEEEEECCC-------------CcEEEEEcC-CCCE--------EEEEECCCCCE
Confidence 667899999999 999999 99999999999988 444444431 1112 12223333311
Q ss_pred ------hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccc---ccc-ccccccccceeEEEEeCC
Q psy8748 1634 ------NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKL---MPK-KSLKGHINKVNSVHYSGD 1703 (2004)
Q Consensus 1634 ------di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~---~pi-~sL~GHt~~VtsLaFSPD 1703 (2004)
+..+..|.. .. .....+.. ... ..+.+|.+.|++++|+|+
T Consensus 113 l~sgs~dg~V~lwd~----------------------------~~--~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 113 MLIGLQNGSMIVYDI----------------------------DR--DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp EEEEETTSCEEEEET----------------------------TT--TEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred EEEEcCCCcEEEEEC----------------------------CC--CccccceeccccccccccccCCCCeEEEEEccC
Confidence 111111200 00 00000000 000 345789999999999996
Q ss_pred -CCEEEEEeCCCeEEEEECCCCceEEEeeCC------------------CCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1704 -SRHCVSGSLDGKLIIWDTWTGNKTQVIPLR------------------SAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1704 -G~~LASGS~DGtIrVWDl~Tgk~l~ti~~H------------------t~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
+..+++|+.||.| +||+.+++....+..| ...|.+++|+|+|++|++|+.||.|++||+.
T Consensus 163 ~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 163 DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN 241 (902)
T ss_dssp EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 5789999999999 9999999988888766 4779999999999999999999999999997
Q ss_pred CCCCCCcceEEEEE---e-------------cCccceeeeEE--------------------------------------
Q psy8748 1765 NRDSTGAAKVIREL---L-------------GYEGFLSSCRF-------------------------------------- 1790 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl---~-------------gh~~~Vssvaf-------------------------------------- 1790 (2004)
+++.... +.+ . .+...|.+++|
T Consensus 242 ~g~~~~~----r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 242 SGHMIMA----RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp TCCEEEE----ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred CCcEEEE----EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 6432100 000 0 00111122221
Q ss_pred ---------------------------------eC-----------CCcEEEeecCCeEEEEECCCCceeEE------ee
Q psy8748 1791 ---------------------------------ID-----------DTTLLTGSGDMKIVTWNLETGQRIHE------VA 1820 (2004)
Q Consensus 1791 ---------------------------------sd-----------d~~LlSgS~DGtI~IWDl~tg~~i~~------il 1820 (2004)
.. ...+++++.||.|++||+.++..... ..
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l 397 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNL 397 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGG
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcc
Confidence 11 11356667778888888876643221 01
Q ss_pred ----------------------------------ccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEE----EE-
Q psy8748 1821 ----------------------------------QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCV----QT- 1861 (2004)
Q Consensus 1821 ----------------------------------~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I----~t- 1861 (2004)
.+|...+.+++|+|+++++++|+.||+|++||+.++... ..
T Consensus 398 ~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~ 477 (902)
T 2oaj_A 398 SWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEV 477 (902)
T ss_dssp TTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEE
T ss_pred cccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEe
Confidence 223333444556789999999999999999999876421 11
Q ss_pred -Ee-----cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc------------------------------------
Q psy8748 1862 -FF-----GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ------------------------------------ 1899 (2004)
Q Consensus 1862 -l~-----~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk------------------------------------ 1899 (2004)
+. +|...|.+++|+|++++|++|+.||+|++||+.+++
T Consensus 478 ~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (902)
T 2oaj_A 478 NLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRA 557 (902)
T ss_dssp EHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGC
T ss_pred echhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccC
Confidence 11 788999999999999999999999999999998763
Q ss_pred ---------eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-----Ec-cCCCCeEEEEEc---
Q psy8748 1900 ---------QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGV-----LS-GHENRVTSISLS--- 1961 (2004)
Q Consensus 1900 ---------~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~t-----L~-gHs~~VtsLaFS--- 1961 (2004)
++..+ ..|...|++++|+|+| +||+|+.||+|++||+++...+.. +. +|.+.|++++|+
T Consensus 558 ~~~~~~g~~~~~~l--~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~ 634 (902)
T 2oaj_A 558 PTGVRQGFMPSTAV--HANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIME 634 (902)
T ss_dssp CTTCSEEEEEEEEE--CCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEE
T ss_pred CCCCCCccceeEEE--EcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEe
Confidence 13333 4577899999999999 999999999999999988876642 22 899999999999
Q ss_pred --CCC---CEEEEEECCCeEEEEEC---CCCeEEEEE
Q psy8748 1962 --PNG---MALVTSSWDQFVKVWQE---SNTIVWKVL 1990 (2004)
Q Consensus 1962 --PDg---~~LaSgS~DGtIrIWdl---stg~l~k~I 1990 (2004)
||| .+|++|+.||+|++|++ .+|+....+
T Consensus 635 ~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~ 671 (902)
T 2oaj_A 635 YGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQL 671 (902)
T ss_dssp CTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEE
T ss_pred cCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEe
Confidence 885 89999999999999999 666544433
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6e-32 Score=329.03 Aligned_cols=291 Identities=23% Similarity=0.369 Sum_probs=250.2
Q ss_pred ccccccccee--EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeC-CCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1687 SLKGHINKVN--SVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL-RSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1687 sL~GHt~~Vt--sLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
...+|.+.+. +++|+ +..+++++.||.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|++||+
T Consensus 86 ~~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp ECTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eCCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 3447776654 45555 45688889999999999999998888776 7899999999999999999999999999999
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
.++ .....+.+|...+.++.| ++..+++++.||.|++||++..........+|.+.|.+++|+|++++|++|+
T Consensus 164 ~~~------~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 164 ESQ------TKLRTMAGHQARVGCLSW-NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp TTC------CEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred cCC------eEEEEecCCCCceEEEEE-CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 754 456777899999999999 5678999999999999999966555566778999999999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCC-EEEEEE--CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC
Q psy8748 1844 VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL-AFATGS--EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS 1920 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~-~LaSgS--~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP 1920 (2004)
.||.|++||+++++.+..+..|...|.+++|+|++. .+++++ .||.|++||+++++....+. +...+.+++|+|
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~s~ 313 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---AGSQVTSLIWSP 313 (401)
T ss_dssp TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---CSSCEEEEEECS
T ss_pred CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---CCCcEEEEEECC
Confidence 999999999999999999999999999999999764 555654 69999999999999888874 346799999999
Q ss_pred CCCEEEEE--eCCCeEEEEECCCCeeeE--EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q psy8748 1921 SGRYIFCG--SDDNNVHVWDLLKTTHNG--VLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKV 1989 (2004)
Q Consensus 1921 dG~~LaSG--SsDGsIrIWDL~tge~l~--tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~ 1989 (2004)
+|++++++ +.||.|++||+.++.... .+.+|.+.|.+++|+|++.+|++++.||.|++|++.+++....
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 99999994 489999999999866554 4678999999999999999999999999999999998865443
No 57
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-33 Score=338.34 Aligned_cols=298 Identities=15% Similarity=0.261 Sum_probs=245.4
Q ss_pred cccccccc-cccccceeEEEEeC-CCCEEEEEeCCCeEEEEECCC---Cc---eEEEeeCCCCceEEEEEecCCCEEEEe
Q psy8748 1681 KLMPKKSL-KGHINKVNSVHYSG-DSRHCVSGSLDGKLIIWDTWT---GN---KTQVIPLRSAWVMSVAFAQSGNFVACG 1752 (2004)
Q Consensus 1681 k~~pi~sL-~GHt~~VtsLaFSP-DG~~LASGS~DGtIrVWDl~T---gk---~l~ti~~Ht~~ItsLafSPdg~~LaSG 1752 (2004)
....+..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +. ....+ .|...|.+++|+|++++|++|
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEE
T ss_pred cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEE
Confidence 34556677 89999999999999 999999999999999999876 43 23333 489999999999999999999
Q ss_pred ecCCeEEEEEcC---CCCCCCc--ceEEEEEe--c--CccceeeeEEe---CCCcEEEeecCCeEEEEECCCCceeEEee
Q psy8748 1753 GMDNMCTVYDLN---NRDSTGA--AKVIRELL--G--YEGFLSSCRFI---DDTTLLTGSGDMKIVTWNLETGQRIHEVA 1820 (2004)
Q Consensus 1753 S~DGtIrVWDl~---t~~~~~~--~k~i~sl~--g--h~~~Vssvafs---dd~~LlSgS~DGtI~IWDl~tg~~i~~il 1820 (2004)
+.||.|++||++ .+..... ...+..+. . +...+.++.+. ++..+++++.||.|++||+++++.+..+.
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 999999999995 2211100 01111111 1 44556666643 35679999999999999999998876654
Q ss_pred cc-ccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeC----CCCEEEEEECCCeEEEEE
Q psy8748 1821 QA-HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVCFHP----SGLAFATGSEDKTARLFD 1894 (2004)
Q Consensus 1821 ~~-h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~-~h~s~ItsIafSP----dg~~LaSgS~DGtIrIWD 1894 (2004)
.. |.+.|++++|+|+++++++|+.||.|++||+++++.+..+. .|...|.+++|+| ++.++++|+.||.|++||
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence 32 88999999999999999999999999999999999998886 7888999996665 677999999999999999
Q ss_pred ccCCceeEEEcCCC------------------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc
Q psy8748 1895 IRADQQIATYLPPN------------------------KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG 1950 (2004)
Q Consensus 1895 Lrtgk~i~t~~~~~------------------------~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g 1950 (2004)
+++++....+.... +...|.+++|+ ++++|++|+.||.|++||+.+++....+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence 99998877765321 55668999999 789999999999999999999887777665
Q ss_pred -------------------------------------CCCCeEEEEEcCC--CCEEEEEECCCeEEEEE
Q psy8748 1951 -------------------------------------HENRVTSISLSPN--GMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1951 -------------------------------------Hs~~VtsLaFSPD--g~~LaSgS~DGtIrIWd 1980 (2004)
|.+.|++++|+++ +.+|++|+.||.|++|+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 369 PSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp C--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999988 88999999999999995
No 58
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8.1e-33 Score=325.58 Aligned_cols=287 Identities=15% Similarity=0.236 Sum_probs=243.8
Q ss_pred cccccccceeEEEEeCC----CCEEEEEeCCCeEEEEECCCCceEEEeeC-----CCCceEEEEEecC----CCEEEEee
Q psy8748 1687 SLKGHINKVNSVHYSGD----SRHCVSGSLDGKLIIWDTWTGNKTQVIPL-----RSAWVMSVAFAQS----GNFVACGG 1753 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPD----G~~LASGS~DGtIrVWDl~Tgk~l~ti~~-----Ht~~ItsLafSPd----g~~LaSGS 1753 (2004)
...+|.+.|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ ++++++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 45666677778999999998887766653 5678999999999 67999999
Q ss_pred cCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCCCceeEEee--ccccCCeEE
Q psy8748 1754 MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQRIHEVA--QAHIGDVVS 1829 (2004)
Q Consensus 1754 ~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~~i~~il--~~h~~~Its 1829 (2004)
.||.|++||+.++ +....+.+|...+.++.|++ +..+++++.||.|++||+++++....+. ..|...|.+
T Consensus 93 ~dg~i~v~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 166 (366)
T 3k26_A 93 SRGIIRIINPITM------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 166 (366)
T ss_dssp TTCEEEEECTTTC------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEE
T ss_pred CCCEEEEEEchhc------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeE
Confidence 9999999999754 45667788999999999986 4568999999999999999988775542 579999999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeEEEEE----------------------------ecCCCCeEEEEEeCCCCEE
Q psy8748 1830 ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF----------------------------FGHEADVNSVCFHPSGLAF 1881 (2004)
Q Consensus 1830 LafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl----------------------------~~h~s~ItsIafSPdg~~L 1881 (2004)
++|+|+++++++++.||.|++||+++++....+ ..|...|.+++|+ ++++
T Consensus 167 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 244 (366)
T 3k26_A 167 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI 244 (366)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE
T ss_pred EEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE
Confidence 999999999999999999999999876543322 2389999999999 6799
Q ss_pred EEEECCCeEEEEEccCCce--------------eEEEcCCCCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCee-
Q psy8748 1882 ATGSEDKTARLFDIRADQQ--------------IATYLPPNKNSGFTSCAVSSS--GRYIFCGSDDNNVHVWDLLKTTH- 1944 (2004)
Q Consensus 1882 aSgS~DGtIrIWDLrtgk~--------------i~t~~~~~~~s~ItsLafSPd--G~~LaSGSsDGsIrIWDL~tge~- 1944 (2004)
++++.||.|++||++++.. +..+ ..+...+.+++|+|+ |++|++|+.||.|++||+.+++.
T Consensus 245 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF--DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp EEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE--ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred EEEecCCEEEEEeCCCccccccccccCCcchheeccc--cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 9999999999999987654 4444 345567899999999 99999999999999999998764
Q ss_pred ---eEEEccC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1945 ---NGVLSGH--ENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1945 ---l~tL~gH--s~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
...+.+| ...|++++|+|++++|++|+.||.|++||+.+
T Consensus 323 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 323 KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 3467777 79999999999999999999999999999853
No 59
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-32 Score=324.26 Aligned_cols=285 Identities=14% Similarity=0.191 Sum_probs=249.9
Q ss_pred cccccceeEEEEeCCCC-EEEEEeCCCeEEEEEC----CCCc------eEEEeeC----------CCCceEEEEEecCCC
Q psy8748 1689 KGHINKVNSVHYSGDSR-HCVSGSLDGKLIIWDT----WTGN------KTQVIPL----------RSAWVMSVAFAQSGN 1747 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~-~LASGS~DGtIrVWDl----~Tgk------~l~ti~~----------Ht~~ItsLafSPdg~ 1747 (2004)
..|.+.|++++|+|+++ +|++|+.||.|++||+ .+++ ....+.. |.+.|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 44669999999999999 9999999999999999 8888 4555544 677999999999999
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCC
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD 1826 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ 1826 (2004)
+|++|+.||.|++|+.. ......+.+|...+.++.|.++ ..+++++.||.|++||+.+++....+ ..+...
T Consensus 122 ~l~~~~~dg~i~i~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~ 193 (425)
T 1r5m_A 122 SIVTGVENGELRLWNKT-------GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF-ELKETG 193 (425)
T ss_dssp EEEEEETTSCEEEEETT-------SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE-CCC---
T ss_pred EEEEEeCCCeEEEEeCC-------CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe-eccccC
Confidence 99999999999999932 3566778889999999999865 46889999999999999998877544 344444
Q ss_pred ---------------eEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEE
Q psy8748 1827 ---------------VVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTAR 1891 (2004)
Q Consensus 1827 ---------------ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIr 1891 (2004)
+.+++|++++ .+++++.||.|++||+++++.+..+..|...|.+++|+|+++++++++.||.|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 272 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR 272 (425)
T ss_dssp ------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 8899999874 588999999999999999998889999999999999999999999999999999
Q ss_pred EEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEE
Q psy8748 1892 LFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1892 IWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS 1971 (2004)
+||+++++....+. .+...+.+++|+|++ ++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++
T Consensus 273 i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 273 IWHGGNGNSQNCFY--GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp EECSSSBSCSEEEC--CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCccceEec--CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE
Confidence 99999998888773 466789999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCe
Q psy8748 1972 WDQFVKVWQESNTI 1985 (2004)
Q Consensus 1972 ~DGtIrIWdlstg~ 1985 (2004)
.||.|++|++.++.
T Consensus 350 ~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 350 MDGQVNVYDLKKLN 363 (425)
T ss_dssp TTSCEEEEECHHHH
T ss_pred CCCeEEEEECCCCc
Confidence 99999999998765
No 60
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3e-31 Score=308.56 Aligned_cols=302 Identities=19% Similarity=0.292 Sum_probs=257.1
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
|.++|.+++|+|||++++++..++.+.+|+............|...|.+++|+|+++++++++ ||.|++|++..+....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 667899999999999999998888887776665555555567999999999999999999999 9999999998754322
Q ss_pred cceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCcee-EEeeccccCCeEEEEECCCCCEEEEEECCCeE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRI-HEVAQAHIGDVVSISLSPDGQYFVTGSVDKSC 1848 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i-~~il~~h~~~ItsLafSPdg~~LaSGS~DGsI 1848 (2004)
.... ....+|...+.++.|++++ .+++++.||.|++||+.+++.. ......|...|.+++|+|+++++++++.||.|
T Consensus 87 ~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQ-LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEE-EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeec-ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 2221 2223688999999999655 5888999999999999987732 23456788899999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEE
Q psy8748 1849 KLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCG 1928 (2004)
Q Consensus 1849 rIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSG 1928 (2004)
++||+++++.+..+..|...|.+++|+|+++++++++.||.|++||+++++....+. +...+.+++|+|+++++++|
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~ 242 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD---FTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECTTSSEEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec---CCCceEEEEECCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999998887763 45679999999999999999
Q ss_pred eCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEeecCCCCcccc
Q psy8748 1929 SDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFC 2002 (2004)
Q Consensus 1929 SsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~Vts 2002 (2004)
+.||.|++||+.+++.. .+..|...|.+++|+|++++|++++.||.|++|++.+++..... .|...|.+
T Consensus 243 ~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~----~~~~~v~~ 311 (337)
T 1gxr_A 243 MESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLS 311 (337)
T ss_dssp ETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----ECSSCEEE
T ss_pred cCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe----cCCCcEEE
Confidence 99999999999887754 67789999999999999999999999999999999998754322 24555554
No 61
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.2e-31 Score=310.50 Aligned_cols=310 Identities=16% Similarity=0.200 Sum_probs=240.2
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC----ceEEEeeCCCCceEEEEEec--CCCEEEEeecCCeE
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG----NKTQVIPLRSAWVMSVAFAQ--SGNFVACGGMDNMC 1758 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg----k~l~ti~~Ht~~ItsLafSP--dg~~LaSGS~DGtI 1758 (2004)
...+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.+++|+| ++++|++|+.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 4567899999999999999999999999999999999876 46667789999999999999 69999999999999
Q ss_pred EEEEcCCCCCCC---cceEEEEEecCccceeeeEEeC---CCcEEEeecCCeEEEEECCCCceeEEe------------e
Q psy8748 1759 TVYDLNNRDSTG---AAKVIRELLGYEGFLSSCRFID---DTTLLTGSGDMKIVTWNLETGQRIHEV------------A 1820 (2004)
Q Consensus 1759 rVWDl~t~~~~~---~~k~i~sl~gh~~~Vssvafsd---d~~LlSgS~DGtI~IWDl~tg~~i~~i------------l 1820 (2004)
++||++.+.... .......+.+|...+.++.|.+ +..+++++.||.|++||+++++..... .
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 999998754221 2256777888999999999996 456999999999999999887654322 1
Q ss_pred ccccCCeEEEEECCC---CCEEEEEECCCeEEEEECCCCeE--EEEEecCCCCeEEEEEeCCC----CEEEEEECCCeEE
Q psy8748 1821 QAHIGDVVSISLSPD---GQYFVTGSVDKSCKLWDFREKKC--VQTFFGHEADVNSVCFHPSG----LAFATGSEDKTAR 1891 (2004)
Q Consensus 1821 ~~h~~~ItsLafSPd---g~~LaSGS~DGsIrIWDlrs~k~--I~tl~~h~s~ItsIafSPdg----~~LaSgS~DGtIr 1891 (2004)
..+...+.+++|+|+ +..+++++.|+.+.+|+...+.. +..+.+|...|.+++|+|++ ++|++|+.||.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 257788999999997 89999999999998888887765 67778899999999999998 8999999999999
Q ss_pred EEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe----CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEE
Q psy8748 1892 LFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS----DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMAL 1967 (2004)
Q Consensus 1892 IWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS----sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~L 1967 (2004)
+||++++....... ............+.......+. ..+.+.+|+....+.+..+.+|.+.|++++|+|++++|
T Consensus 244 iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 321 (351)
T 3f3f_A 244 IFKITEKLSPLASE--ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL 321 (351)
T ss_dssp EEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE
T ss_pred EEeCCCCcCccccC--CcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEE
Confidence 99998765544332 2222333344444444444433 34556677777778888999999999999999999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEEeecCC
Q psy8748 1968 VTSSWDQFVKVWQESNTIVWKVLKVYNLE 1996 (2004)
Q Consensus 1968 aSgS~DGtIrIWdlstg~l~k~Ik~~~~h 1996 (2004)
++|+.||.|++|++.++..++.++.+..|
T Consensus 322 ~s~~~dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 322 SSAGDDGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp EEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred EEecCCCcEEEEecCcCcchhheeehccc
Confidence 99999999999999999889999888765
No 62
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.9e-31 Score=318.19 Aligned_cols=300 Identities=14% Similarity=0.153 Sum_probs=252.6
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
...|++.|++++|+| ++||+ |+.||+|++||+.+ +...
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s-~~~dg~i~iw~~~~-------------~~~~-------------------------- 49 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVS-CSGDGYLKVWDNKL-------------LDNE-------------------------- 49 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEE-EETTSEEEEEESBC-------------CTTC--------------------------
T ss_pred hhhhhcCeEEEEecC--CeEEE-EcCCCEEEEEECCC-------------cccc--------------------------
Confidence 346999999999999 89999 99999999999977 1000
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCC----C--
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGD----S-- 1704 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPD----G-- 1704 (2004)
........+.+|...|++++|+|+ +
T Consensus 50 -------------------------------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 50 -------------------------------------------------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp -------------------------------------------------CGGGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred -------------------------------------------------cCCCcceEEecCCCcEEEEEEecccccCCcc
Confidence 001234556789999999999999 9
Q ss_pred -CEEEEEeCCCeEEEEECCCCce-----EEEeeCC-----CCceEEEEEe----cCCCE-EEEeecCCeEEEEEcCC---
Q psy8748 1705 -RHCVSGSLDGKLIIWDTWTGNK-----TQVIPLR-----SAWVMSVAFA----QSGNF-VACGGMDNMCTVYDLNN--- 1765 (2004)
Q Consensus 1705 -~~LASGS~DGtIrVWDl~Tgk~-----l~ti~~H-----t~~ItsLafS----Pdg~~-LaSGS~DGtIrVWDl~t--- 1765 (2004)
++|++++.||.|++||+.+++. ...+..| ...|.+++|+ |++++ +++++.||.|++||+..
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 9999999999999999999887 8888888 5899999999 99999 99999999999999987
Q ss_pred ---CCCCCcceEEEEE-------ecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeecc---c---cCCeEE
Q psy8748 1766 ---RDSTGAAKVIREL-------LGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA---H---IGDVVS 1829 (2004)
Q Consensus 1766 ---~~~~~~~k~i~sl-------~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~---h---~~~Its 1829 (2004)
..... ......+ ..|...+.++.|.+++.+++++.||.|++||+++++.+..+ .. | ...|.+
T Consensus 161 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 161 ESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNF-ESQHSMINNSNSIRS 238 (397)
T ss_dssp HHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEE-ECCC---CCCCCEEE
T ss_pred ccccceee-ccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEE-eccccccccCCccce
Confidence 33221 1111133 44788899999996668888999999999999998877544 45 7 889999
Q ss_pred EEECCCCCEEEEEECC---CeEEEEECCCCeEEEEEec-------------CCCCeEEEEEeCCCCEEEEEECCCeEEEE
Q psy8748 1830 ISLSPDGQYFVTGSVD---KSCKLWDFREKKCVQTFFG-------------HEADVNSVCFHPSGLAFATGSEDKTARLF 1893 (2004)
Q Consensus 1830 LafSPdg~~LaSGS~D---GsIrIWDlrs~k~I~tl~~-------------h~s~ItsIafSPdg~~LaSgS~DGtIrIW 1893 (2004)
++|+|++++|++++.| |.|++||+++++.+..+.. |...|.+++|+|++++|++++.||.|++|
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 9999999999999999 9999999999999999988 99999999999999999999999999999
Q ss_pred EccCCceeEEEcCC----CC---------------CCCeEEEEEcCCC----------CEEEEEeCCCeEEEEECCCCe
Q psy8748 1894 DIRADQQIATYLPP----NK---------------NSGFTSCAVSSSG----------RYIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1894 DLrtgk~i~t~~~~----~~---------------~s~ItsLafSPdG----------~~LaSGSsDGsIrIWDL~tge 1943 (2004)
|+++++.+..+... .+ ...|.+++|+|+| ++|++|+.||.|++||+.+++
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 99999988888521 33 6889999999998 799999999999999987763
No 63
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-31 Score=350.02 Aligned_cols=293 Identities=23% Similarity=0.369 Sum_probs=246.1
Q ss_pred CCCCCCeEEEEEccCC-CEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1552 EPCKEQRNAVSFHACS-TLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdG-k~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..|.+.|++++|+|++ ++|+| |+.||+|++|++.. .. ..
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s-~s~D~~i~~W~~~~--------------------~~----------~~--------- 418 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVS-ASRDKSIILWKLTK--------------------DD----------KA--------- 418 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEE-EETTSEEEEEECCC--------------------ST----------TC---------
T ss_pred ccCCceeEEEEecCCCCCEEEE-EeCCCcEEEEEccC--------------------CC----------cc---------
Confidence 4599999999999975 79999 99999999999876 00 00
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
.......+.+|.+.|++++|+|++++|++|
T Consensus 419 --------------------------------------------------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sg 448 (694)
T 3dm0_A 419 --------------------------------------------------YGVAQRRLTGHSHFVEDVVLSSDGQFALSG 448 (694)
T ss_dssp --------------------------------------------------SCEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred --------------------------------------------------cccccceecCCCCcEEEEEECCCCCEEEEE
Confidence 001234577899999999999999999999
Q ss_pred eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE
Q psy8748 1711 SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf 1790 (2004)
+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.||.|++||..... .........+|...+.++.|
T Consensus 449 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~---~~~~~~~~~~h~~~v~~~~~ 525 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC---KYTISEGGEGHRDWVSCVRF 525 (694)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE---EEEECSSTTSCSSCEEEEEE
T ss_pred eCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc---ceeeccCCCCCCCcEEEEEE
Confidence 999999999999999999999999999999999999999999999999999975321 11111122468888999999
Q ss_pred eCCC---cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC
Q psy8748 1791 IDDT---TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA 1867 (2004)
Q Consensus 1791 sdd~---~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s 1867 (2004)
+++. .+++++.||.|++||+++++.. ..+.+|.+.|++++|+|++++|++|+.||.|++||+++++.+..+. +..
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~-~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~ 603 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKLR-STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANS 603 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSS
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcEE-EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCC
Confidence 8754 5999999999999999988776 4457899999999999999999999999999999999999887774 456
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCC-----------------CCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1868 DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN-----------------KNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1868 ~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~-----------------~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
.|.+++|+|++.++++++ ++.|++||++++..+..+.... +...+++++|+|+|++|++|+.
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~ 682 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT 682 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence 899999999998887776 6679999999988877664221 1123788999999999999999
Q ss_pred CCeEEEEECC
Q psy8748 1931 DNNVHVWDLL 1940 (2004)
Q Consensus 1931 DGsIrIWDL~ 1940 (2004)
||+|++||+.
T Consensus 683 Dg~i~iW~i~ 692 (694)
T 3dm0_A 683 DGVIRVWGIG 692 (694)
T ss_dssp TSEEEEEEC-
T ss_pred CCeEEEEecc
Confidence 9999999985
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-30 Score=321.58 Aligned_cols=301 Identities=18% Similarity=0.340 Sum_probs=261.1
Q ss_pred ccccccccccce-eEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1684 PKKSLKGHINKV-NSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1684 pi~sL~GHt~~V-tsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
....+.+|.+.| .++.+ +++++++|+.||+|++||+.+++.+..+.+|.+.|.+++|++++ .+++|+.||.|++||
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 355789999885 66665 56799999999999999999999999999999999999999888 999999999999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEe---CCCcEEEeecCCeEEEEECCCCcee----------------------E
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFI---DDTTLLTGSGDMKIVTWNLETGQRI----------------------H 1817 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafs---dd~~LlSgS~DGtI~IWDl~tg~~i----------------------~ 1817 (2004)
++++ .....+.+|...+.++.+. ++..+++|+.||.|++||+.++... .
T Consensus 190 ~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 190 IKKG------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp TTTT------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred CCCC------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 9754 5667788899999999997 3467999999999999999877643 2
Q ss_pred EeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC
Q psy8748 1818 EVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1818 ~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt 1897 (2004)
....+|...+.++ +++++++++|+.||.|++||+++++.+..+.+|...|.+++|+|+++++++|+.||.|++||+++
T Consensus 264 ~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp EEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred EEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 3456788888877 56789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q psy8748 1898 DQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVK 1977 (2004)
Q Consensus 1898 gk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIr 1977 (2004)
++.+..+. .|...+.+++|+ ++++++|+.||.|++||+.++....... |...+..++|++++.++++|+ ||.|+
T Consensus 342 ~~~~~~~~--~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~ 415 (464)
T 3v7d_B 342 GELMYTLQ--GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFN 415 (464)
T ss_dssp TEEEEEEC--CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEE
T ss_pred CcEEEEEe--CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEE
Confidence 99988884 566889999997 6899999999999999999887766654 677888899999999999999 99999
Q ss_pred EEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1978 VWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1978 IWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
+||+.+++.... ....|.+.|+++
T Consensus 416 iwd~~~g~~~~~--~~~~~~~~v~~v 439 (464)
T 3v7d_B 416 IYNLRSGKLVHA--NILKDADQIWSV 439 (464)
T ss_dssp EEETTTCCEEES--CTTTTCSEEEEE
T ss_pred EEECCCCcEEeh--hhccCCCcEEEE
Confidence 999999865332 244566666654
No 65
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.9e-30 Score=300.62 Aligned_cols=279 Identities=21% Similarity=0.404 Sum_probs=242.2
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee--CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP--LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~--~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
..++|+||+++ +||+| .|++|+|||+.+|+.+..+. .|...|.+++|+|+++++++|+.||.|++|+++++
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~----- 99 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----- 99 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT-----
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc-----
Confidence 35789999886 67766 58999999999999888765 57788999999999999999999999999999754
Q ss_pred ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIW 1851 (2004)
+......+|...+.++.+. +..+++++.++.+++|+...+........+|...+.++.++++++++++++.||.|++|
T Consensus 100 -~~~~~~~~h~~~~~~~~~~-~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 177 (318)
T 4ggc_A 100 -KRLRNMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177 (318)
T ss_dssp -EEEEEEECCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred -eeEEEecCccceEEEeecC-CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence 5677788888888776654 46789999999999999998877767778999999999999999999999999999999
Q ss_pred ECCCCe----EEEEEecCCCCeEEEEEeCCCCEE---EEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1852 DFREKK----CVQTFFGHEADVNSVCFHPSGLAF---ATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1852 Dlrs~k----~I~tl~~h~s~ItsIafSPdg~~L---aSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
|+++++ .......+...|.+++++|++..+ ++++.++.|++||.......... .+...+..+.|+++++.
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~ 254 (318)
T 4ggc_A 178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---DAHSQVCSILWSPHYKE 254 (318)
T ss_dssp ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE---ECSSCEEEEEEETTTTE
T ss_pred ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc---cceeeeeeeeecccccc
Confidence 998764 234556788899999999976533 45667899999999988877665 34467899999999998
Q ss_pred EEEEe--CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1925 IFCGS--DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1925 LaSGS--sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
+++++ .||.|++||+.+++++..+.+|.+.|++++|+|+|++|+|||.||+|+|||+.+.
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 88765 7999999999999999999999999999999999999999999999999999764
No 66
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-30 Score=320.36 Aligned_cols=280 Identities=21% Similarity=0.392 Sum_probs=246.6
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee--CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP--LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~--~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
.++.|+||++ +.||+|. |++|+|||..+|+....+. .|...|++++|+|+|++|++|+.||.|++||+.++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~----- 179 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----- 179 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC-----
Confidence 4788999975 4777765 8999999999999887665 57788999999999999999999999999999754
Q ss_pred ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIW 1851 (2004)
+......+|...+.++.+. +..+++|+.|+.+++||..........+.+|...+..+.++|+++++++++.||.+++|
T Consensus 180 -~~~~~~~~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~ 257 (420)
T 4gga_A 180 -KRLRNMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257 (420)
T ss_dssp -EEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred -cEEEEEeCCCCceEEEeeC-CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence 5677888999999998875 56899999999999999998777667778999999999999999999999999999999
Q ss_pred ECCCCe----EEEEEecCCCCeEEEEEeCCCC-EEEEE--ECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1852 DFREKK----CVQTFFGHEADVNSVCFHPSGL-AFATG--SEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1852 Dlrs~k----~I~tl~~h~s~ItsIafSPdg~-~LaSg--S~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
|...++ .+.....|...|.+++|+|++. .++++ +.||+|++||+.+++....+.. ...+.++.|+++++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHYKE 334 (420)
T ss_dssp ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC---SSCEEEEEEETTTTE
T ss_pred eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc---ccceeeeeecCCCCe
Confidence 998764 3566778999999999999654 55543 4799999999999998888743 356899999999999
Q ss_pred EEEEe--CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q psy8748 1925 IFCGS--DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1925 LaSGS--sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~ 1985 (2004)
+++++ .||.|++||+.+++++..+.+|.+.|++++|+|||.+|+||+.||+|++||+.+..
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 98765 68999999999999999999999999999999999999999999999999997654
No 67
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9e-31 Score=310.03 Aligned_cols=292 Identities=17% Similarity=0.158 Sum_probs=244.3
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
|.++|++++|+|+|++||+ |+.||.|++||..+ +.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~-~~~d~~v~i~~~~~-------------~~------------------------------- 41 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAI-CPNNHEVHIYEKSG-------------NK------------------------------- 41 (372)
T ss_dssp CSSCCCEEEECTTSSEEEE-ECSSSEEEEEEEET-------------TE-------------------------------
T ss_pred cCCCeEEEEECCCCCEEEE-EeCCCEEEEEeCCC-------------Cc-------------------------------
Confidence 7788999999999999999 99999999999877 11
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCC
Q psy8748 1634 NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLD 1713 (2004)
Q Consensus 1634 di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~D 1713 (2004)
+.....+.+|.+.|++++|+|++++|++++.|
T Consensus 42 ------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 73 (372)
T 1k8k_C 42 ------------------------------------------------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 73 (372)
T ss_dssp ------------------------------------------------EEEEEEEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred ------------------------------------------------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCC
Confidence 00133456799999999999999999999999
Q ss_pred CeEEEEECCCCceEEEe--eCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEE-EEEecCccceeeeEE
Q psy8748 1714 GKLIIWDTWTGNKTQVI--PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVI-RELLGYEGFLSSCRF 1790 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti--~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i-~sl~gh~~~Vssvaf 1790 (2004)
|.|++||+.+++..... ..|...|.+++|+|+++++++|+.||.|++|+++... ..... ....+|...+.++.|
T Consensus 74 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 74 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN---DWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT---TEEEEEEECTTCCSCEEEEEE
T ss_pred CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC---cceeeeeeecccCCCeeEEEE
Confidence 99999999888755443 6689999999999999999999999999999998653 11222 233567889999999
Q ss_pred eCC-CcEEEeecCCeEEEEECC------------------CCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy8748 1791 IDD-TTLLTGSGDMKIVTWNLE------------------TGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1791 sdd-~~LlSgS~DGtI~IWDl~------------------tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIW 1851 (2004)
.++ ..+++++.||.|++||+. .++.. ..+..|...|.+++|+|+++++++++.||.|++|
T Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 229 (372)
T 1k8k_C 151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM-FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 229 (372)
T ss_dssp CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE-EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhhe-EecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 965 468899999999999964 44554 4445888999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC--CceeE---------------------------
Q psy8748 1852 DFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA--DQQIA--------------------------- 1902 (2004)
Q Consensus 1852 Dlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt--gk~i~--------------------------- 1902 (2004)
|+++++.+..+..|...|.+++|+|++.++++| .||.|++||+.+ ++...
T Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 230 DADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp EGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred ECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 999999999999999999999999999888877 899999999987 42100
Q ss_pred ----------EEcCCCCCCCeEEEEEc-CCC---CEEEEEeCCCeEEEEECCCCe
Q psy8748 1903 ----------TYLPPNKNSGFTSCAVS-SSG---RYIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1903 ----------t~~~~~~~s~ItsLafS-PdG---~~LaSGSsDGsIrIWDL~tge 1943 (2004)
......|...|++++|. ++| ++|++|+.||.|++||+.+++
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 11113677899999966 676 999999999999999986643
No 68
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.4e-31 Score=312.65 Aligned_cols=297 Identities=20% Similarity=0.304 Sum_probs=243.0
Q ss_pred ccccccccccceeEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEee-------------CCCCceEEEEEec-CCCE
Q psy8748 1684 PKKSLKGHINKVNSVHYSG-DSRHCVSGSLDGKLIIWDTWTGNKTQVIP-------------LRSAWVMSVAFAQ-SGNF 1748 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSP-DG~~LASGS~DGtIrVWDl~Tgk~l~ti~-------------~Ht~~ItsLafSP-dg~~ 1748 (2004)
....+.+|.+.|++++|+| ++++|++|+.||.|++||+.++.....+. +|...|.+++|+| ++++
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3556788999999999999 99999999999999999999886654443 5899999999999 7789
Q ss_pred EEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC----CcEEEeecCCeEEEEECCCCceeEEeecccc
Q psy8748 1749 VACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD----TTLLTGSGDMKIVTWNLETGQRIHEVAQAHI 1824 (2004)
Q Consensus 1749 LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd----~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~ 1824 (2004)
+++++.||.|++||+.++ .....+ .+...+.++.+.+. ..+++++.+|.|++||+.+++... .+..|.
T Consensus 115 l~s~~~d~~i~iwd~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~~ 186 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTL------QTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH-ILQGHR 186 (408)
T ss_dssp EEEEETTSEEEEEETTTT------EEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE-EECCCC
T ss_pred EEEEeCCCeEEEeeCCCC------ccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee-eecCCC
Confidence 999999999999999764 233333 35667778887742 369999999999999999988774 446799
Q ss_pred CCeEEEEECCCCC-EEEEEECCCeEEEEECCCCe-EEEEE---------------ecCCCCeEEEEEeCCCCEEEEEECC
Q psy8748 1825 GDVVSISLSPDGQ-YFVTGSVDKSCKLWDFREKK-CVQTF---------------FGHEADVNSVCFHPSGLAFATGSED 1887 (2004)
Q Consensus 1825 ~~ItsLafSPdg~-~LaSGS~DGsIrIWDlrs~k-~I~tl---------------~~h~s~ItsIafSPdg~~LaSgS~D 1887 (2004)
+.|.+++|+|+++ .+++|+.||.|++||++.+. .+..+ ..|...|.+++|+|+++++++++.|
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 266 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD 266 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC
Confidence 9999999999998 58999999999999998765 33443 4688899999999999999999999
Q ss_pred CeEEEEEccCCceeEEEcCCCC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCC
Q psy8748 1888 KTARLFDIRADQQIATYLPPNK---NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNG 1964 (2004)
Q Consensus 1888 GtIrIWDLrtgk~i~t~~~~~~---~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg 1964 (2004)
|.|++||+++++.......... ...+........+..+++++.+|.|++||+.+++.+..+.+|.+.|++++|+|++
T Consensus 267 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 346 (408)
T 4a11_B 267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF 346 (408)
T ss_dssp SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT
T ss_pred CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC
Confidence 9999999998876544322111 1122222333445667777889999999999999999999999999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEE
Q psy8748 1965 MALVTSSWDQFVKVWQESNTIVWK 1988 (2004)
Q Consensus 1965 ~~LaSgS~DGtIrIWdlstg~l~k 1988 (2004)
++|++|+.||.|++|++.+++...
T Consensus 347 ~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 347 QELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TEEEEEETTSCEEEEEECC-----
T ss_pred CEEEEECCCCeEEEEeCCCCCccC
Confidence 999999999999999999876543
No 69
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.7e-31 Score=312.14 Aligned_cols=246 Identities=16% Similarity=0.208 Sum_probs=205.1
Q ss_pred ccccceeEEEEeCC---CCEEEEEeCCCeEEEEECCCCc-eEEEeeCCCCceEEEEE------ecCCCEEEEeecCCeEE
Q psy8748 1690 GHINKVNSVHYSGD---SRHCVSGSLDGKLIIWDTWTGN-KTQVIPLRSAWVMSVAF------AQSGNFVACGGMDNMCT 1759 (2004)
Q Consensus 1690 GHt~~VtsLaFSPD---G~~LASGS~DGtIrVWDl~Tgk-~l~ti~~Ht~~ItsLaf------SPdg~~LaSGS~DGtIr 1759 (2004)
+|.+.|++++|+|+ +++|++|+.||.|++||+.+++ ....+.+|...|.+++| +|+++++++|+.||.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 58899999999998 6999999999999999999988 88899999999999965 67899999999999999
Q ss_pred EEEcCCCCCCCcceEEEEEecCc----cceeeeEE----e-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEE
Q psy8748 1760 VYDLNNRDSTGAAKVIRELLGYE----GFLSSCRF----I-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSI 1830 (2004)
Q Consensus 1760 VWDl~t~~~~~~~k~i~sl~gh~----~~Vssvaf----s-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsL 1830 (2004)
+||+..+. .....+..+. ..+.++.| + ++..+++++.||.|++||+++++.... ..|...|.++
T Consensus 143 vwd~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~v~~~ 215 (357)
T 3i2n_A 143 VWDPRQKD-----DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TNIKNGVCSL 215 (357)
T ss_dssp EECTTSCS-----SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEE
T ss_pred EEeCCCCC-----CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--cCCCCceEEE
Confidence 99998653 1223333333 36777774 3 556788999999999999999887533 4788899999
Q ss_pred EECC---CCCEEEEEECCCeEEEEECCCCeEEEEE-----ecCCCCeEEEEEeCCCC-EEEEEECCCeEEEEEccCCc--
Q psy8748 1831 SLSP---DGQYFVTGSVDKSCKLWDFREKKCVQTF-----FGHEADVNSVCFHPSGL-AFATGSEDKTARLFDIRADQ-- 1899 (2004)
Q Consensus 1831 afSP---dg~~LaSGS~DGsIrIWDlrs~k~I~tl-----~~h~s~ItsIafSPdg~-~LaSgS~DGtIrIWDLrtgk-- 1899 (2004)
+|+| +++++++|+.||.|++||+++++....+ .+|...|.+++|+|++. ++++++.||.|++||++++.
T Consensus 216 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 216 EFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred EcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 9999 9999999999999999999876654433 48999999999999998 89999999999999998653
Q ss_pred -----------------eeEEEcCCCCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCee
Q psy8748 1900 -----------------QIATYLPPNKNSGFTSCAVSSSGRYIF-CGSDDNNVHVWDLLKTTH 1944 (2004)
Q Consensus 1900 -----------------~i~t~~~~~~~s~ItsLafSPdG~~La-SGSsDGsIrIWDL~tge~ 1944 (2004)
.+..+ ..|...|++++|+|+|++++ +|+.||.|++||+.+.+.
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 296 SKKDSEGIEMGVAGSVSLLQNV--TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp --CCTTSCCCCCCCEEEEEEEE--ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccccCCCCccccccccceeecc--ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 23333 45668899999999999998 799999999999987653
No 70
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.7e-32 Score=332.39 Aligned_cols=296 Identities=16% Similarity=0.259 Sum_probs=235.5
Q ss_pred ccccccccccceeEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEE--EeeCCCCceEEEEEec-CCCEEEEeecCCeEE
Q psy8748 1684 PKKSLKGHINKVNSVHYSG-DSRHCVSGSLDGKLIIWDTWTGNKTQ--VIPLRSAWVMSVAFAQ-SGNFVACGGMDNMCT 1759 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSP-DG~~LASGS~DGtIrVWDl~Tgk~l~--ti~~Ht~~ItsLafSP-dg~~LaSGS~DGtIr 1759 (2004)
......+|...|+|++|+| ++++||+|+.||.|+|||+.+++... .+.+|.+.|++++|+| ++++|++|+.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 3456678999999999999 56799999999999999998876544 4568999999999998 689999999999999
Q ss_pred EEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC-
Q psy8748 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ- 1837 (2004)
Q Consensus 1760 VWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~- 1837 (2004)
+||++.. ..........+...+.++.|+++ ..+++|+.||.|++||++... + ..+.+|...|.+++|+|++.
T Consensus 191 iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~-~~~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 191 LQDFKGN----ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-L-WNLRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp EEETTSC----EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-C-CCSBCCSSCEEEEEECTTCSS
T ss_pred EeeccCC----ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-e-EEEecccceEEeeeecCCCce
Confidence 9999653 12222222334456778888855 568889999999999997543 3 33568999999999999876
Q ss_pred EEEEEECCCeEEEEECCCCeEEE---EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCC----
Q psy8748 1838 YFVTGSVDKSCKLWDFREKKCVQ---TFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN---- 1910 (2004)
Q Consensus 1838 ~LaSGS~DGsIrIWDlrs~k~I~---tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~---- 1910 (2004)
++++|+.||.|++||+++.+... ...+|...|++++|+|+|++|++++.||.|++||+.++.....+..+.+.
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 344 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH 344 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSS
T ss_pred EEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccc
Confidence 78899999999999998765433 33578999999999999999999999999999999999887776443321
Q ss_pred CCeEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeeeEEEc-cCCCCeEEE-EEcCCCCEEEEEECCCeE
Q psy8748 1911 SGFTSCAVSSSGRYIFCGS------------DDNNVHVWDLLKTTHNGVLS-GHENRVTSI-SLSPNGMALVTSSWDQFV 1976 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGS------------sDGsIrIWDL~tge~l~tL~-gHs~~VtsL-aFSPDg~~LaSgS~DGtI 1976 (2004)
..+..+.|+|++.+++++. .++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++|+ |+.|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i 423 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHI 423 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEE
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcE
Confidence 1234567788777777764 23579999999999988874 688889887 6999999999876 8899
Q ss_pred EEEECCCCeE
Q psy8748 1977 KVWQESNTIV 1986 (2004)
Q Consensus 1977 rIWdlstg~l 1986 (2004)
+||++++++.
T Consensus 424 ~iW~~~~gk~ 433 (435)
T 4e54_B 424 LIWSQQEART 433 (435)
T ss_dssp EECCCC----
T ss_pred EEEECCcCee
Confidence 9999998854
No 71
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=349.27 Aligned_cols=287 Identities=11% Similarity=0.099 Sum_probs=222.3
Q ss_pred cccccccceeEEEEeCC------CCEEEEEeCCCeEEEEECCCCce-----------EEEeeCCCCceEEEEEecCCCEE
Q psy8748 1687 SLKGHINKVNSVHYSGD------SRHCVSGSLDGKLIIWDTWTGNK-----------TQVIPLRSAWVMSVAFAQSGNFV 1749 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPD------G~~LASGS~DGtIrVWDl~Tgk~-----------l~ti~~Ht~~ItsLafSPdg~~L 1749 (2004)
.+.+|.+.|++++|+|+ +.+||+|+.||+|++||+.++.. ...+.+|...|.+++|+++ ..|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence 35568899999999996 57999999999999999987642 2467889999999999986 489
Q ss_pred EEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeee--EEeCC--CcEEEeecCCeEEEEECCCCceeEEeecccc-
Q psy8748 1750 ACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSC--RFIDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQAHI- 1824 (2004)
Q Consensus 1750 aSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssv--afsdd--~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~- 1824 (2004)
++|+.||+|++||++++. .....+.+|...|.++ .|.++ ..+++|+.||+|++||+++++..... .+|.
T Consensus 281 asgs~DgtV~lWD~~~~~-----~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~-~~~~~ 354 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPE-----VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT-VSRFR 354 (524)
T ss_dssp EEEETTSEEEEEETTBCS-----SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE-EEECS
T ss_pred EEEeCCCEEEEEECCCCC-----CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc-ccccc
Confidence 999999999999997542 2234567899999999 45654 46899999999999999987765433 3443
Q ss_pred -CCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEE
Q psy8748 1825 -GDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIAT 1903 (2004)
Q Consensus 1825 -~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t 1903 (2004)
..|.+++|+|+++.+++++.|++|++||++++.++..+.+|...|++++|+|+|++|++|+.||+|++||.... ....
T Consensus 355 ~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~ 433 (524)
T 2j04_B 355 GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHG 433 (524)
T ss_dssp CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTC
T ss_pred cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccc
Confidence 35889999999999999999999999999999888888899999999999999999999999999999998643 2111
Q ss_pred EcC---CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEEccCCCCeEEEEEcCCCC---EEEEEECCCeE
Q psy8748 1904 YLP---PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL-KTTHNGVLSGHENRVTSISLSPNGM---ALVTSSWDQFV 1976 (2004)
Q Consensus 1904 ~~~---~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~-tge~l~tL~gHs~~VtsLaFSPDg~---~LaSgS~DGtI 1976 (2004)
... ......+..++|+|+|+.+. ...+ +.+|+.. ++.....+.+|...|.+++|+|++. .+++|+.||.|
T Consensus 434 ~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~v 510 (524)
T 2j04_B 434 IKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLL 510 (524)
T ss_dssp C------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEE
T ss_pred cccCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceE
Confidence 100 01112467899999998553 2222 3344332 5677888999999999999999954 99999999999
Q ss_pred EEEECCCC
Q psy8748 1977 KVWQESNT 1984 (2004)
Q Consensus 1977 rIWdlstg 1984 (2004)
+||++...
T Consensus 511 rlw~l~~~ 518 (524)
T 2j04_B 511 TLEYLSLE 518 (524)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 99999875
No 72
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-30 Score=298.11 Aligned_cols=285 Identities=21% Similarity=0.260 Sum_probs=244.6
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
...|++.|++++| |+|++||+ |+.||+|++||+.+ +..
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s-~~~dg~v~vw~~~~-------------~~~--------------------------- 51 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVAS-VSRDGTVRLWSKDD-------------QWL--------------------------- 51 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEE-EETTSEEEEEEESS-------------SEE---------------------------
T ss_pred hhCCCCCcEEEEe-cCCCEEEE-EEcCCcEEEEECCC-------------CEE---------------------------
Confidence 3468999999999 99999999 99999999999866 111
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
...+.+|.+.|++++|+|+++++++|
T Consensus 52 ------------------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~ 77 (313)
T 3odt_A 52 ------------------------------------------------------GTVVYTGQGFLNSVCYDSEKELLLFG 77 (313)
T ss_dssp ------------------------------------------------------EEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred ------------------------------------------------------EEEeecCCccEEEEEECCCCCEEEEe
Confidence 12344588899999999999999999
Q ss_pred eCCCeEEEEECCCC---ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceee
Q psy8748 1711 SLDGKLIIWDTWTG---NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS 1787 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tg---k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vss 1787 (2004)
+.||.|++|++.+. +....+..|...|.++.| +++++++++.||.|++||. ......+..|...+.+
T Consensus 78 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--------~~~~~~~~~~~~~v~~ 147 (313)
T 3odt_A 78 GKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--------GSLVYNLQAHNASVWD 147 (313)
T ss_dssp ETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--------TEEEEEEECCSSCEEE
T ss_pred cCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--------CcEEEecccCCCceeE
Confidence 99999999998764 567778899999999999 5889999999999999992 2556677889999999
Q ss_pred eEEeC--CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecC
Q psy8748 1788 CRFID--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH 1865 (2004)
Q Consensus 1788 vafsd--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h 1865 (2004)
+.+.+ ++.+++++.||.|++|| .++........|...+.+++|+|++. +++++.||.|++||+++++.+..+.+|
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~ 224 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH 224 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence 98874 67799999999999999 34444444444899999999999988 999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1866 EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
...|.+++|+|++ .+++++.||.|++||+++++....+. .+...+.+++|+|+|+ +++|+.||.|++||+.+++..
T Consensus 225 ~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 225 ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT--LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE--CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe--ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 9999999999999 68899999999999999999888884 4456899999999998 567899999999999887665
Q ss_pred EEE
Q psy8748 1946 GVL 1948 (2004)
Q Consensus 1946 ~tL 1948 (2004)
...
T Consensus 301 ~~~ 303 (313)
T 3odt_A 301 SED 303 (313)
T ss_dssp C--
T ss_pred ehh
Confidence 443
No 73
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-32 Score=324.58 Aligned_cols=291 Identities=16% Similarity=0.303 Sum_probs=252.7
Q ss_pred cccceeEEEEeCCCC-EEEEE----------eCCCeEEEEECCCCc---eEEEeeCCCCceEEEEEecCCCEEEEeecCC
Q psy8748 1691 HINKVNSVHYSGDSR-HCVSG----------SLDGKLIIWDTWTGN---KTQVIPLRSAWVMSVAFAQSGNFVACGGMDN 1756 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~-~LASG----------S~DGtIrVWDl~Tgk---~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG 1756 (2004)
+...|.+++|+|+++ ++++| +.||.|++||+.++. ....+ .|...|.+++|+|++++|++|+.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 456899999999987 99999 889999999998875 33333 5888999999999999999999999
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCCCc------eeEE--eeccccCC
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQ------RIHE--VAQAHIGD 1826 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~------~i~~--il~~h~~~ 1826 (2004)
.|++|++..... .......+.+|...+.++.|++ +..+++++.||.|++||+.+++ .... ....|...
T Consensus 90 ~v~vw~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 90 SLELYSTNEANN--AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp CEEEECCSSTTS--CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred eEEEeecccccc--cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 999999976321 1236677888999999999996 4679999999999999999876 3222 23578899
Q ss_pred eEEEEECCC-CCEEEEEECCCeEEEEECCCCeEEEEEecC------CCCeEEEEEeCCC-CEEEEEECCC---eEEEEEc
Q psy8748 1827 VVSISLSPD-GQYFVTGSVDKSCKLWDFREKKCVQTFFGH------EADVNSVCFHPSG-LAFATGSEDK---TARLFDI 1895 (2004)
Q Consensus 1827 ItsLafSPd-g~~LaSGS~DGsIrIWDlrs~k~I~tl~~h------~s~ItsIafSPdg-~~LaSgS~DG---tIrIWDL 1895 (2004)
|.+++|+|+ +.++++++.||.|++||+++++.+..+..+ ...|.+++|+|++ .++++++.|| .|++||+
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 999999998 789999999999999999999998888776 7899999999997 6899999998 9999999
Q ss_pred cCCc-eeEEEcCCCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCC-CEEEEEEC
Q psy8748 1896 RADQ-QIATYLPPNKNSGFTSCAVSS-SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNG-MALVTSSW 1972 (2004)
Q Consensus 1896 rtgk-~i~t~~~~~~~s~ItsLafSP-dG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg-~~LaSgS~ 1972 (2004)
+++. ....+. ..+...+.+++|+| ++++|++|+.||.|++||+.+++.+..+.+|...|++++|+|++ .+|++++.
T Consensus 248 ~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~ 326 (416)
T 2pm9_A 248 RNANTPLQTLN-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF 326 (416)
T ss_dssp TSTTSCSBCCC-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS
T ss_pred CCCCCCcEEee-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec
Confidence 9874 333331 15678899999999 99999999999999999999999999999999999999999999 89999999
Q ss_pred CCeEEEEECCCCe
Q psy8748 1973 DQFVKVWQESNTI 1985 (2004)
Q Consensus 1973 DGtIrIWdlstg~ 1985 (2004)
||.|++|++.++.
T Consensus 327 d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 327 DNKIEVQTLQNLT 339 (416)
T ss_dssp SSEEEEEESCCCC
T ss_pred CCcEEEEEccCCC
Confidence 9999999998764
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.8e-31 Score=314.60 Aligned_cols=284 Identities=16% Similarity=0.207 Sum_probs=235.6
Q ss_pred CCCCCCeEEEEEccCC-CEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1552 EPCKEQRNAVSFHACS-TLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdG-k~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
.+|...|++++|+|+| ++||+ |+.||+|++||+.+ +...
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~-------------~~~~-------------------------- 109 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAV-GSKGGDIILWDYDV-------------QNKT-------------------------- 109 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEE-EEBTSCEEEEETTS-------------TTCE--------------------------
T ss_pred cCCCCCEEEEEECCCCCCEEEE-EcCCCeEEEEeCCC-------------cccc--------------------------
Confidence 4688899999999999 99999 99999999999977 1100
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeC-CCCEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG-DSRHCVS 1709 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSP-DG~~LAS 1709 (2004)
....+.+|.+.|++++|+| ++++|++
T Consensus 110 -----------------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 110 -----------------------------------------------------SFIQGMGPGDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp -----------------------------------------------------EEECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred -----------------------------------------------------eeeecCCcCCceeEEEeCCCCCCEEEE
Confidence 0112246999999999999 7899999
Q ss_pred EeCCCeEEEEECCCCceEEEeeCC---CCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcccee
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPLR---SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~H---t~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vs 1786 (2004)
++.||.|++||+.+ .....+..+ ...|.+++|+|+++++++|+.||.|++||++ ......+.+|...+.
T Consensus 137 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-------~~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 137 SSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-------GHEIFKEKLHKAKVT 208 (383)
T ss_dssp EETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-------SCEEEEEECSSSCEE
T ss_pred EeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-------CCEEEEeccCCCcEE
Confidence 99999999999985 555555444 4889999999999999999999999999984 245677888999999
Q ss_pred eeEEeCCC--cEEEeecCCeEEEEECCC----CceeEEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCCeEE
Q psy8748 1787 SCRFIDDT--TLLTGSGDMKIVTWNLET----GQRIHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKCV 1859 (2004)
Q Consensus 1787 svafsdd~--~LlSgS~DGtI~IWDl~t----g~~i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k~I 1859 (2004)
++.|++++ .+++++.||.|++||+++ +...... +|...|.+++|+| ++++|++++.||.|++||+++++..
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~ 286 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP 286 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 99999765 588999999999999987 4444333 6899999999999 9999999999999999999987766
Q ss_pred EEEecCC-----------------CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1860 QTFFGHE-----------------ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1860 ~tl~~h~-----------------s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
..+.+|. ..+..++|+|++++ +|+.||.|++||+.+++.+..+....+...+.+++|+|+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g 364 (383)
T 3ei3_B 287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG 364 (383)
T ss_dssp SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTS
T ss_pred cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCc
Confidence 6655442 23344556666655 6678999999999999999888765566778888999999
Q ss_pred CEEEEEeCCCeEEEEECCC
Q psy8748 1923 RYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~t 1941 (2004)
++|++|+ ||.|++||+.+
T Consensus 365 ~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 365 DVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SEEEEEE-TTEEEEEECC-
T ss_pred cEEEEec-CCcEEEEecCC
Confidence 9999997 99999999864
No 75
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.1e-30 Score=314.82 Aligned_cols=298 Identities=26% Similarity=0.432 Sum_probs=261.5
Q ss_pred ccccccccccce-eEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1684 PKKSLKGHINKV-NSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1684 pi~sL~GHt~~V-tsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
....+.+|.+.| .+ ++++|+++++|+.||.|++||+.+++....+.+|.+.|.+++|+ ++.+++|+.||.|++||
T Consensus 110 ~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 110 SPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred eeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 456789999976 55 44568999999999999999999999999999999999999998 77999999999999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
+.++ +....+.+|...+.++.+. ++.+++|+.||.|++||+.+++.... ..+|...|.+++| +++++++|
T Consensus 186 ~~~~------~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 186 AETG------ECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHV-LMGHVAAVRCVQY--DGRRVVSG 255 (445)
T ss_dssp TTTT------EEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSCCEEEE-EECCSSCEEEEEE--CSSCEEEE
T ss_pred CCcC------cEEEEECCCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCCcEEEE-EcCCcccEEEEEE--CCCEEEEE
Confidence 9754 5667788999999999995 56799999999999999999887744 4689999999999 68899999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
+.||.|++||+++++.+..+.+|...|.+++| ++.++++|+.||.|++||+++++....+. .+...+.++.+ ++
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~--~~ 329 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT--GHQSLTSGMEL--KD 329 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC--CCCSCEEEEEE--ET
T ss_pred cCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc--CCcccEEEEEE--eC
Confidence 99999999999999999999999999999999 78899999999999999999999988874 45567777766 57
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEcc---CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEee--cCCC
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLSG---HENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVY--NLEK 1997 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge~l~tL~g---Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~--~~h~ 1997 (2004)
+++++|+.||.|++||+.+++.+..+.+ |...|++++|+ +.+|++|+.||.|++||+.+++....+... ..|.
T Consensus 330 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 407 (445)
T 2ovr_B 330 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 407 (445)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCC
Confidence 8999999999999999999999999986 88899999995 679999999999999999999876666433 2455
Q ss_pred Cccccc
Q psy8748 1998 KTIFCV 2003 (2004)
Q Consensus 1998 ~~VtsV 2003 (2004)
+.|+++
T Consensus 408 ~~v~~~ 413 (445)
T 2ovr_B 408 GVVWRI 413 (445)
T ss_dssp CEEEEE
T ss_pred ceEEEE
Confidence 566554
No 76
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.8e-31 Score=310.46 Aligned_cols=242 Identities=12% Similarity=0.173 Sum_probs=211.5
Q ss_pred cccceeEEEEeCC----CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEec-CCCEEEEeecCCeEEEEEcCC
Q psy8748 1691 HINKVNSVHYSGD----SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQ-SGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1691 Ht~~VtsLaFSPD----G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSP-dg~~LaSGS~DGtIrVWDl~t 1765 (2004)
|.+.|++++|+|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| +++++++|+.||.|++||+.+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 7789999999998 67999999999999999999999999999999999999999 899999999999999999975
Q ss_pred CCCCCcceEEEEE---ecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEE-----------------------
Q psy8748 1766 RDSTGAAKVIREL---LGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHE----------------------- 1818 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl---~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~----------------------- 1818 (2004)
+ .....+ .+|...+.++.|+++ ..+++++.||.|++||+++++....
T Consensus 148 ~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T 3k26_A 148 D------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF 221 (366)
T ss_dssp T------EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred C------eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeecc
Confidence 4 344555 678999999999865 5688999999999999987754321
Q ss_pred ----eeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCe--------------EEEEEecCCCCeEEEEEeCC--C
Q psy8748 1819 ----VAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKK--------------CVQTFFGHEADVNSVCFHPS--G 1878 (2004)
Q Consensus 1819 ----il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k--------------~I~tl~~h~s~ItsIafSPd--g 1878 (2004)
....|...|.+++|+ ++++++++.||.|++||++++. .+..+..|...|.+++|+|+ +
T Consensus 222 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 299 (366)
T 3k26_A 222 PDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ 299 (366)
T ss_dssp CSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred CccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence 122388999999998 7899999999999999998763 37788899999999999999 9
Q ss_pred CEEEEEECCCeEEEEEccCCce----eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1879 LAFATGSEDKTARLFDIRADQQ----IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1879 ~~LaSgS~DGtIrIWDLrtgk~----i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
++|++|+.||.|++||+.+++. ...+..+.+...|.+++|+|+|++|++|+.||.|++||+.
T Consensus 300 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 300 KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999998764 3355544447899999999999999999999999999975
No 77
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-32 Score=326.92 Aligned_cols=287 Identities=15% Similarity=0.173 Sum_probs=230.9
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC--ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG--NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg--k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
+..|.++|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.+++|+|++++|++|+.||.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 4457789999999999999999999999999999988 77788899999999999999999999999999999999986
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCce---eEEeeccccCCeEEEEECCCCCEEEE
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQR---IHEVAQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~---i~~il~~h~~~ItsLafSPdg~~LaS 1841 (2004)
+. .......+.+|...+.++.|+++ ..+++++.||.|++||+++++. ...+...|...|.+++|+|++++|++
T Consensus 87 ~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 87 DG---TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred CC---ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 53 23345667789999999999854 5699999999999999998873 43333339999999999999999999
Q ss_pred EECCCeEEEEECC------------------CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce---
Q psy8748 1842 GSVDKSCKLWDFR------------------EKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ--- 1900 (2004)
Q Consensus 1842 GS~DGsIrIWDlr------------------s~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~--- 1900 (2004)
|+.||.|++||++ .++.+..+ +|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 9999999999985 34566666 8999999999999999999999999999999999887
Q ss_pred -eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------------------------------ee----
Q psy8748 1901 -IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT------------------------------HN---- 1945 (2004)
Q Consensus 1901 -i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge------------------------------~l---- 1945 (2004)
+..+ ..+...+.+++|+|+|++|++|+.++.+ +|+..... ..
T Consensus 243 ~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (377)
T 3dwl_C 243 ALITV--KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTA 319 (377)
T ss_dssp ECCCE--ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------
T ss_pred eeEee--cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccc
Confidence 4444 3566789999999999999999877766 66553111 00
Q ss_pred --EEE----------------ccCCCCeEEEEEcCCC-C---EEEEEECCCeEEEEEC
Q psy8748 1946 --GVL----------------SGHENRVTSISLSPNG-M---ALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1946 --~tL----------------~gHs~~VtsLaFSPDg-~---~LaSgS~DGtIrIWdl 1981 (2004)
..+ ..|.+.|+++++.+.. . .|+|||.||.|++||+
T Consensus 320 ~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 320 LRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 111 1399999999976543 3 6999999999999985
No 78
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.3e-30 Score=343.04 Aligned_cols=295 Identities=20% Similarity=0.334 Sum_probs=265.8
Q ss_pred ccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1682 LMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1682 ~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
....+.+.+|.+.|++++|+|+|++|++|+.||.|+|||+.+++.+..+..|...|.+++|+|++++|++|+.||.|++|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC-CCCEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP-DGQYF 1839 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP-dg~~L 1839 (2004)
++.++ .....+.+|.+.+.++.|++++ .+++++.||.|++||+.++........+|...|.+++|+| +++.+
T Consensus 83 ~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 83 NYNTG------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp ETTTC------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred ECCCC------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence 99764 4566778899999999999655 6889999999999999988666667788999999999999 88999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCC-CCeEEEEEeC--CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1840 VTGSVDKSCKLWDFREKKCVQTFFGHE-ADVNSVCFHP--SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs~k~I~tl~~h~-s~ItsIafSP--dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
++++.||.|++||+.++.....+..+. ..+.+++|+| ++.++++++.||.|++||+.+++....+. .+...+.++
T Consensus 157 ~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~v~~~ 234 (814)
T 3mkq_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFA 234 (814)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE--CCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc--CCCCCEEEE
Confidence 999999999999999887776666555 8899999999 99999999999999999999998887774 456789999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCC
Q psy8748 1917 AVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMA-LVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1917 afSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~-LaSgS~DGtIrIWdlstg 1984 (2004)
+|+|+|+++++|+.||.|++||+.+++....+..|...|.+++|+|++.. +++++.|+.+.+|++..+
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999873 244445777899998754
No 79
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.98 E-value=2.7e-30 Score=308.70 Aligned_cols=338 Identities=17% Similarity=0.195 Sum_probs=238.7
Q ss_pred CCCCCCeEEEEEcc-CCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1552 EPCKEQRNAVSFHA-CSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSP-dGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..|.+.|++++|+| +|++||+ |+.||+|++||+.+ +........ ..
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~-~~~dg~i~iw~~~~-------------~~~~~~~~~----------~~--------- 86 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLS-GGSDGVIVLYDLEN-------------SSRQSYYTC----------KA--------- 86 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEE-EETTSCEEEEECCC-------------CSSSSCEEE----------CE---------
T ss_pred eccCCcEEEEEEecCCCCEEEE-EcCCCeEEEEECCC-------------CcccceEec----------cc---------
Confidence 45889999999999 9999999 99999999999987 111111100 00
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeC-CCCEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG-DSRHCVS 1709 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSP-DG~~LAS 1709 (2004)
..........+|.+.|++++|+| ++.++++
T Consensus 87 -------------------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 87 -------------------------------------------------VCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp -------------------------------------------------EEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred -------------------------------------------------cccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 00001122456999999999999 7789999
Q ss_pred EeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecC---CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcccee
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQS---GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPd---g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vs 1786 (2004)
++.||.|++||+.+++....+. +...+.++.|++. +.++++|+.||.|++||+.++ .....+.+|...+.
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~------~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG------SCSHILQGHRQEIL 190 (408)
T ss_dssp EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS------CCCEEECCCCSCEE
T ss_pred EeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc------ceeeeecCCCCcEE
Confidence 9999999999999999888877 6778999999985 459999999999999999764 34456778999999
Q ss_pred eeEEeCCCc--EEEeecCCeEEEEECCCCceeEEee---------------ccccCCeEEEEECCCCCEEEEEECCCeEE
Q psy8748 1787 SCRFIDDTT--LLTGSGDMKIVTWNLETGQRIHEVA---------------QAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849 (2004)
Q Consensus 1787 svafsdd~~--LlSgS~DGtI~IWDl~tg~~i~~il---------------~~h~~~ItsLafSPdg~~LaSGS~DGsIr 1849 (2004)
++.|.+++. +++++.||.|++||++++....... ..|...|.+++|+|+++++++++.||.|+
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 270 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence 999997653 8899999999999998776332222 46888999999999999999999999999
Q ss_pred EEECCCCeEEEEEecCC-----CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1850 LWDFREKKCVQTFFGHE-----ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1850 IWDlrs~k~I~tl~~h~-----s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
+||+++++.......+. ..+........+..+++++.||.|++||+.+++.+..+ ..|...|++++|+|++++
T Consensus 271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~ 348 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML--KGHYKTVDCCVFQSNFQE 348 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE--CCCSSCEEEEEEETTTTE
T ss_pred EEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee--ccCCCeEEEEEEcCCCCE
Confidence 99999887654433221 12222222334556777788999999999999998888 456688999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP-NGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSP-Dg~~LaSgS~DGtIrIWdlst 1983 (2004)
|++|+.||.|++||+.+++.+.....+... ..+.+ ....+.+++.|+.+++|+...
T Consensus 349 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 349 LYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EEEEETTSCEEEEEECC-------------------------------------------
T ss_pred EEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCcc
Confidence 999999999999999998877655433221 22333 334456777899999998754
No 80
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=1.8e-30 Score=304.53 Aligned_cols=281 Identities=11% Similarity=0.098 Sum_probs=244.7
Q ss_pred cccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc---eEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEE
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN---KTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk---~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWD 1762 (2004)
...+|.+.|++++|+|++++|++|+.||.|++||+.++. ....+..|...|.+++|+|+++ ++++|+.||.|++|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 345899999999999999999999999999999998887 3455568999999999999999 999999999999999
Q ss_pred c-CCCCCCCcceEEEEEec--CccceeeeEEeCCCcEEEeecCCeEEEEECCC---------CceeEEeeccccCCeEEE
Q psy8748 1763 L-NNRDSTGAAKVIRELLG--YEGFLSSCRFIDDTTLLTGSGDMKIVTWNLET---------GQRIHEVAQAHIGDVVSI 1830 (2004)
Q Consensus 1763 l-~t~~~~~~~k~i~sl~g--h~~~Vssvafsdd~~LlSgS~DGtI~IWDl~t---------g~~i~~il~~h~~~ItsL 1830 (2004)
+ ..+. ...+.+ |...+.++.|.+++.+++++.||.|++||+++ ++.+..+ .|...|.++
T Consensus 86 ~~~~~~-------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~ 156 (342)
T 1yfq_A 86 LIGSPS-------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT--KVKNKIFTM 156 (342)
T ss_dssp SSSSSS-------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS--SSCCCEEEE
T ss_pred eccCCc-------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEE--eeCCceEEE
Confidence 9 7642 255667 99999999999877899999999999999987 5554333 388899999
Q ss_pred EECCCCCEEEEEECCCeEEEEECCC-Ce--EEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccCC------ce
Q psy8748 1831 SLSPDGQYFVTGSVDKSCKLWDFRE-KK--CVQTFFGHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRAD------QQ 1900 (2004)
Q Consensus 1831 afSPdg~~LaSGS~DGsIrIWDlrs-~k--~I~tl~~h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrtg------k~ 1900 (2004)
+|++++ +++++.||.|++||+++ +. .......|...+.+++|+| +++++++++.||.|++|+++.. +.
T Consensus 157 ~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 157 DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp EECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred EecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 999887 99999999999999988 44 3345557888999999999 9999999999999999999876 66
Q ss_pred eEEEcCCC-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC-CCCeEEEEEcCCCCEEEEEEC
Q psy8748 1901 IATYLPPN-------KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH-ENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1901 i~t~~~~~-------~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH-s~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
...+..+. +...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+| .+.|++++ |++.+|++|+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~ 312 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATS 312 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEE
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEec
Confidence 66664332 2348999999999999999999999999999999999999998 99999999 99999999999
Q ss_pred CCe-EEEEE
Q psy8748 1973 DQF-VKVWQ 1980 (2004)
Q Consensus 1973 DGt-IrIWd 1980 (2004)
||. .+.|.
T Consensus 313 Dg~~~~~~~ 321 (342)
T 1yfq_A 313 DDTFKTNAA 321 (342)
T ss_dssp CTHHHHCSS
T ss_pred CCccccccc
Confidence 998 55555
No 81
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.98 E-value=3.8e-31 Score=320.15 Aligned_cols=282 Identities=17% Similarity=0.263 Sum_probs=240.7
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
..+++++|+|++++|++|+.||.|++||+.+++....+..| ..+....|++++++|++|+.||.|++||+..+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------ 129 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN------ 129 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC------
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc------
Confidence 44568999999999999999999999999887766656655 44556678999999999999999999998743
Q ss_pred eEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy8748 1773 KVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1773 k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIW 1851 (2004)
.....+.+|...+.++.|+++ ..+++++.||.|++||+.+++.... +.+|...|.+++|+|++++|++++.||.|++|
T Consensus 130 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 208 (420)
T 3vl1_A 130 LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT-LIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208 (420)
T ss_dssp EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEE-EECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceE-EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEe
Confidence 445566789999999999965 4689999999999999999887744 46899999999999999999999999999999
Q ss_pred ECCCCeEEEEEec---CCCCeEE---------------------EEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC
Q psy8748 1852 DFREKKCVQTFFG---HEADVNS---------------------VCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP 1907 (2004)
Q Consensus 1852 Dlrs~k~I~tl~~---h~s~Its---------------------IafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~ 1907 (2004)
|+++++.+..+.. +...+.+ ++|+|+++++++|+.||.|++||+++++....+. .
T Consensus 209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~ 287 (420)
T 3vl1_A 209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP-S 287 (420)
T ss_dssp ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC-C
T ss_pred ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc-c
Confidence 9999999888875 3344444 4557889999999999999999999998877774 3
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCee-eEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1908 NKNSGFTSCAVSSSGR-YIFCGSDDNNVHVWDLLKTTH-NGVLSG-HENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1908 ~~~s~ItsLafSPdG~-~LaSGSsDGsIrIWDL~tge~-l~tL~g-Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
.+...+.+++|+|+++ ++++|+.||.|++||+++++. +..+.+ |...|.++.| +++.+|++++.||.|++|++.++
T Consensus 288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 4567899999999999 999999999999999998754 667766 6777888855 57889999999999999998763
No 82
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=4.2e-30 Score=316.14 Aligned_cols=281 Identities=23% Similarity=0.403 Sum_probs=248.1
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
.....+|...|.+++| +++++++|+.||.|++||+.+++....+.+|.+.|.+++| +++++++|+.||.|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 3344567888999887 7899999999999999999999999999999999999999 78999999999999999997
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeE--EeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIH--EVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~--~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
++ .....+.+|...+.++.|. ++.+++|+.||.|++||+.++.... ....+|...|.+++| +++++++|
T Consensus 202 ~~------~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~ 272 (435)
T 1p22_A 202 TG------EMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSA 272 (435)
T ss_dssp SC------CEEEEECCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred CC------cEEEEEcCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEE
Confidence 64 4567788899999999996 5689999999999999999877543 456789999999999 68899999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
+.||.|++||+++++.+..+.+|...|.++.|+ ++++++|+.||.|++||+++++.+..+. .|...+.+++| ++
T Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 273 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVRCIRF--DN 346 (435)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEC--CS
T ss_pred eCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEe--CCcCcEEEEEe--cC
Confidence 999999999999999999999999999999994 6799999999999999999999988884 56678999988 78
Q ss_pred CEEEEEeCCCeEEEEECCCCe---------eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTT---------HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge---------~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
+++++|+.||.|++||+.++. ++..+.+|.+.|++++| ++.+|++|+.||.|++||+.++..
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 999999999999999997665 78889999999999999 788999999999999999988653
No 83
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=5.6e-30 Score=312.01 Aligned_cols=289 Identities=16% Similarity=0.252 Sum_probs=233.3
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------eEEEeeCCC------------CceEEEEEecCC
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN-----------KTQVIPLRS------------AWVMSVAFAQSG 1746 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk-----------~l~ti~~Ht------------~~ItsLafSPdg 1746 (2004)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 378999999999999999999999999999998877 477888998 889999999998
Q ss_pred --CEEEEeecCCeEEEEEcCCCCCCC---------------------c------------ceEEEE-EecCccceeeeEE
Q psy8748 1747 --NFVACGGMDNMCTVYDLNNRDSTG---------------------A------------AKVIRE-LLGYEGFLSSCRF 1790 (2004)
Q Consensus 1747 --~~LaSGS~DGtIrVWDl~t~~~~~---------------------~------------~k~i~s-l~gh~~~Vssvaf 1790 (2004)
..+++++.||.|++|++..+.... . ...... ..+|...|.++.|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 799999999999999987532100 0 001112 3578999999999
Q ss_pred eCCCc-EEEeecCCeEEEEECCCCceeEE-------eeccccCCeEEEEECCCC-CEEEEEECCCeEEEEECCCCeE---
Q psy8748 1791 IDDTT-LLTGSGDMKIVTWNLETGQRIHE-------VAQAHIGDVVSISLSPDG-QYFVTGSVDKSCKLWDFREKKC--- 1858 (2004)
Q Consensus 1791 sdd~~-LlSgS~DGtI~IWDl~tg~~i~~-------il~~h~~~ItsLafSPdg-~~LaSGS~DGsIrIWDlrs~k~--- 1858 (2004)
++++. +++| .||.|++||++++..... ...+|...|.+++|+|++ ++|++|+.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 97655 5555 899999999985443323 245789999999999998 9999999999999999998886
Q ss_pred -EEEEecCCC------------CeEEEEEeCCCCEEEEEECCCeEEEEEccC-CceeEEEcCCCCCC-------------
Q psy8748 1859 -VQTFFGHEA------------DVNSVCFHPSGLAFATGSEDKTARLFDIRA-DQQIATYLPPNKNS------------- 1911 (2004)
Q Consensus 1859 -I~tl~~h~s------------~ItsIafSPdg~~LaSgS~DGtIrIWDLrt-gk~i~t~~~~~~~s------------- 1911 (2004)
+..+..|.. .|.+++|+|+|+++++++. |.|++||+++ ++.+..+..+....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 678888876 8999999999999999998 9999999997 77766664332100
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEc---------------------------------cCCCCeEEE
Q psy8748 1912 GFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS---------------------------------GHENRVTSI 1958 (2004)
Q Consensus 1912 ~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~---------------------------------gHs~~VtsL 1958 (2004)
.+..++|+|+|++|++|+.||.|++||+.+++.+. +. .+...|.++
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 13348999999999999999999999999887753 22 234578999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1959 SLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1959 aFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
+|+|++.+||+++.++ +++|...
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEEECC
T ss_pred EECCCCCEEEEEecce-eeeeccc
Confidence 9999999999998876 8888653
No 84
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=1.1e-30 Score=322.14 Aligned_cols=292 Identities=14% Similarity=0.204 Sum_probs=231.8
Q ss_pred CCCCCCeEEEEEcc-CCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1552 EPCKEQRNAVSFHA-CSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSP-dGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
.+|...|+||+||| ++++||+ |+.||+|+|||+.+ +..
T Consensus 116 ~~~~~~V~~l~~~P~~~~~las-Gs~dg~i~lWd~~~-------------~~~--------------------------- 154 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAV-GSKGGDIMLWNFGI-------------KDK--------------------------- 154 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEE-EETTSCEEEECSSC-------------CSC---------------------------
T ss_pred CCCCCCEEEEEEeCCCCCEEEE-EeCCCEEEEEECCC-------------CCc---------------------------
Confidence 45888899999999 5779999 99999999999876 100
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeC-CCCEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG-DSRHCVS 1709 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSP-DG~~LAS 1709 (2004)
.....+.+|.+.|++++|+| ++++|++
T Consensus 155 ----------------------------------------------------~~~~~~~gH~~~V~~l~f~p~~~~~l~s 182 (435)
T 4e54_B 155 ----------------------------------------------------PTFIKGIGAGGSITGLKFNPLNTNQFYA 182 (435)
T ss_dssp ----------------------------------------------------CEEECCCSSSCCCCEEEECSSCTTEEEE
T ss_pred ----------------------------------------------------eeEEEccCCCCCEEEEEEeCCCCCEEEE
Confidence 01223567999999999998 7899999
Q ss_pred EeCCCeEEEEECCCCceEEEeeC--CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceee
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPL--RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS 1787 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~--Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vss 1787 (2004)
|+.||+|++||+.++........ +...+.+++|+|++++|++|+.||.|++||++.. ....+.+|...|.+
T Consensus 183 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-------~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 183 SSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-------ELWNLRMHKKKVTH 255 (435)
T ss_dssp ECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-------BCCCSBCCSSCEEE
T ss_pred EeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-------eeEEEecccceEEe
Confidence 99999999999977654433333 3456889999999999999999999999998642 34456789999999
Q ss_pred eEEeCCC--cEEEeecCCeEEEEECCCCceeEEe--eccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q psy8748 1788 CRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEV--AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF 1863 (2004)
Q Consensus 1788 vafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~i--l~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~ 1863 (2004)
+.|++++ .+++|+.||.|++||+++++....+ ..+|...|++++|+|+|++|++|+.||.|++||++++.....+.
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence 9998653 5778999999999999887644332 35788999999999999999999999999999999988877776
Q ss_pred cCCC------CeEEEEEeCCCCEEEEEEC------------CCeEEEEEccCCceeEEEcCCCCCCCeEEE-EEcCCCCE
Q psy8748 1864 GHEA------DVNSVCFHPSGLAFATGSE------------DKTARLFDIRADQQIATYLPPNKNSGFTSC-AVSSSGRY 1924 (2004)
Q Consensus 1864 ~h~s------~ItsIafSPdg~~LaSgS~------------DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL-afSPdG~~ 1924 (2004)
.|.. .+....|+|++..+++++. ++.|++||..+++.+..+.. .+...|.++ +|+|+|++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 336 PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-PESSGISSLNEFNPMGDT 414 (435)
T ss_dssp CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-SSCCCCCCEEEECTTSSC
T ss_pred cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-CCCCcEEEEEEECCCCCE
Confidence 6543 2345678888877777652 35799999999998877643 445667766 79999999
Q ss_pred EEEEeCCCeEEEEECCCCeee
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l 1945 (2004)
|++|+ |+.|+|||+++++..
T Consensus 415 lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 415 LASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEEEC-SSEEEECCCC-----
T ss_pred EEEEc-CCcEEEEECCcCeee
Confidence 99876 889999999887653
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=8.6e-30 Score=298.34 Aligned_cols=251 Identities=20% Similarity=0.218 Sum_probs=214.6
Q ss_pred ccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC--CceEEEeeCCCCceEEEEEec--CCCEEEEeecCCeEEEE
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT--GNKTQVIPLRSAWVMSVAFAQ--SGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T--gk~l~ti~~Ht~~ItsLafSP--dg~~LaSGS~DGtIrVW 1761 (2004)
..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+ ++.+..+.+|.+.|.+++|++ ++++|++|+.||.|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45789999999999999999999999999999999874 367788999999999999986 38999999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeC---CCcEEEeecCCeEEEEECCCCce-eEEeeccccCCeEEEEECCC--
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFID---DTTLLTGSGDMKIVTWNLETGQR-IHEVAQAHIGDVVSISLSPD-- 1835 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsd---d~~LlSgS~DGtI~IWDl~tg~~-i~~il~~h~~~ItsLafSPd-- 1835 (2004)
|+.++. ......+.+|...+.++.|.+ +..+++++.||.|++||++++.. ......+|...|.+++|+|+
T Consensus 83 d~~~~~----~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 83 KEENGR----WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (297)
T ss_dssp EBSSSC----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred EcCCCc----eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence 997642 223455678899999999986 45799999999999999987642 22445789999999999996
Q ss_pred -----------CCEEEEEECCCeEEEEECCCCe----EEEEEecCCCCeEEEEEeCCC---CEEEEEECCCeEEEEEccC
Q psy8748 1836 -----------GQYFVTGSVDKSCKLWDFREKK----CVQTFFGHEADVNSVCFHPSG---LAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1836 -----------g~~LaSGS~DGsIrIWDlrs~k----~I~tl~~h~s~ItsIafSPdg---~~LaSgS~DGtIrIWDLrt 1897 (2004)
+++|++|+.||.|++||++++. ....+.+|...|.+++|+|++ .+|++++.||+|++||+++
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 5799999999999999998765 567788999999999999984 8999999999999999987
Q ss_pred Cce--e-EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1898 DQQ--I-ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1898 gk~--i-~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
... . ..+....+...+.+++|+|+|++|++|+.||.|++|+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 532 1 222224556789999999999999999999999999975
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.8e-31 Score=317.18 Aligned_cols=287 Identities=15% Similarity=0.148 Sum_probs=225.5
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
|+++|++++|+|+|++||+ |+.||+|++||+.+ +.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~-~~~d~~i~iw~~~~-------------~~------------------------------- 44 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVT-TTATNQVELYEQDG-------------NG------------------------------- 44 (377)
T ss_dssp CSSCCSCCEECSSSSEEEC-CCSSSCBCEEEEET-------------TE-------------------------------
T ss_pred CCCcEEEEEECCCCCEEEE-ecCCCEEEEEEccC-------------Cc-------------------------------
Confidence 5568999999999999999 99999999999876 10
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCC
Q psy8748 1634 NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLD 1713 (2004)
Q Consensus 1634 di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~D 1713 (2004)
+.....+.+|.+.|++++|+|++++|++|+.|
T Consensus 45 ------------------------------------------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 45 ------------------------------------------------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp ------------------------------------------------EEECCCBCCCSSCEEEEEECTTTCCEEEEETT
T ss_pred ------------------------------------------------eEEEEEEecCCceEEEEEEeCCCCEEEEEeCC
Confidence 00233466799999999999999999999999
Q ss_pred CeEEEEECCCCc---eEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEec-CccceeeeE
Q psy8748 1714 GKLIIWDTWTGN---KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLG-YEGFLSSCR 1789 (2004)
Q Consensus 1714 GtIrVWDl~Tgk---~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~g-h~~~Vssva 1789 (2004)
|.|++||+.+++ ....+..|...|.+++|+|++++|++|+.||.|++||++.+. .......+.+ |...+.++.
T Consensus 77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN---DWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC--------CCCCEEECSSCCSCEEEEE
T ss_pred CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc---cceeeeEeecccCCCeEEEE
Confidence 999999999887 677788899999999999999999999999999999998653 1223455666 899999999
Q ss_pred EeCC-CcEEEeecCCeEEEEECCC------------------CceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEE
Q psy8748 1790 FIDD-TTLLTGSGDMKIVTWNLET------------------GQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1790 fsdd-~~LlSgS~DGtI~IWDl~t------------------g~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrI 1850 (2004)
|+++ ..+++++.||.|++||+.. ++.... + +|.+.|.+++|+|++++|++++.||.|++
T Consensus 154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE-Y-PSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC-C-CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc-c-cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 9965 4688999999999999863 223322 3 88999999999999999999999999999
Q ss_pred EECCCCeE----EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce--------------------------
Q psy8748 1851 WDFREKKC----VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ-------------------------- 1900 (2004)
Q Consensus 1851 WDlrs~k~----I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~-------------------------- 1900 (2004)
||+++++. +..+.+|...|.+++|+|+++++++|+.++.+ +|+......
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGRE 310 (377)
T ss_dssp CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCC
T ss_pred EECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccc
Confidence 99998876 77888999999999999999999988766555 776542110
Q ss_pred -e---------EEE--------------cCCCCCCCeEEEEEcCCC-C---EEEEEeCCCeEEEEEC
Q psy8748 1901 -I---------ATY--------------LPPNKNSGFTSCAVSSSG-R---YIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1901 -i---------~t~--------------~~~~~~s~ItsLafSPdG-~---~LaSGSsDGsIrIWDL 1939 (2004)
. ..+ ....|...|+++++.+.+ . .+++|+.||.|++||+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 311 EEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp C-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 000 011267889999976643 3 6999999999999985
No 87
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=8.7e-29 Score=303.43 Aligned_cols=263 Identities=16% Similarity=0.281 Sum_probs=216.1
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
+.+|.+.|++++|+|+|++||+|+.||.|++||+.+++.+..+.+|...+.++.|+ +..+++|+.|+.+++|+....
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~- 219 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA- 219 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS-
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc-
Confidence 34688899999999999999999999999999999999999999999999988875 789999999999999998753
Q ss_pred CCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCcee---EEeeccccCCeEEEEECCCCC-EEEEE
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRI---HEVAQAHIGDVVSISLSPDGQ-YFVTG 1842 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i---~~il~~h~~~ItsLafSPdg~-~LaSG 1842 (2004)
......+.+|...+..+.+.++ ..+++++.||.+++||..+++.. ......|.+.|.+++|+|.+. .++++
T Consensus 220 ----~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~ 295 (420)
T 4gga_A 220 ----EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 295 (420)
T ss_dssp ----SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEE
T ss_pred ----ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEE
Confidence 3556778899999999999854 56889999999999999877532 233567889999999999654 55554
Q ss_pred --ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEE
Q psy8748 1843 --SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS--EDKTARLFDIRADQQIATYLPPNKNSGFTSCAV 1918 (2004)
Q Consensus 1843 --S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS--~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLaf 1918 (2004)
+.||.|++||+.+++....+.. ...+.++.|+++++.+++++ .||.|++||+.+++.+..+ .+|...|++++|
T Consensus 296 ~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l--~gH~~~V~~l~~ 372 (420)
T 4gga_A 296 GGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL--KGHTSRVLSLTM 372 (420)
T ss_dssp ECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE--CCCSSCEEEEEE
T ss_pred eecCCCEEEEEeCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE--cCCCCCEEEEEE
Confidence 4799999999999998888865 46788999999999988766 6899999999999999888 467789999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEE
Q psy8748 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1919 SPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaF 1960 (2004)
+|+|++|++|+.||+|++||+....+......+...+....|
T Consensus 373 spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 373 SPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp CTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred cCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 999999999999999999999887776666655555444444
No 88
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=5.2e-30 Score=310.49 Aligned_cols=285 Identities=12% Similarity=0.147 Sum_probs=225.1
Q ss_pred ccceeEEEEeCCCCEEEEEeCCC-------eEEEEECCCCce----------EEEeeCCCCceEEEEEecCCCEEEEe--
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDG-------KLIIWDTWTGNK----------TQVIPLRSAWVMSVAFAQSGNFVACG-- 1752 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DG-------tIrVWDl~Tgk~----------l~ti~~Ht~~ItsLafSPdg~~LaSG-- 1752 (2004)
..+|++++|+|||++|++||.|. .|++|++..+.. ...+..|...|.+++++ ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 35899999999999999998643 599999876532 12356788888888765 6666665
Q ss_pred ---------ecCCeEEEEEcCCCCCCCcceEEEE-----EecCccceeeeEEeCCCc-EE--EeecCCeEEEEECCCCce
Q psy8748 1753 ---------GMDNMCTVYDLNNRDSTGAAKVIRE-----LLGYEGFLSSCRFIDDTT-LL--TGSGDMKIVTWNLETGQR 1815 (2004)
Q Consensus 1753 ---------S~DGtIrVWDl~t~~~~~~~k~i~s-----l~gh~~~Vssvafsdd~~-Ll--SgS~DGtI~IWDl~tg~~ 1815 (2004)
+.|+.+++|++..... ....... ...+...+.+++|++++. ++ +++.|+.|++||+.+++.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~ 169 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVND--QLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE 169 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTT--EEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCc--eEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence 4577899999876432 1111111 122345688899997665 44 345789999999999988
Q ss_pred eEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEE--EecCCCCeEEEEEeCCCCEEEEEECCC----e
Q psy8748 1816 IHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQT--FFGHEADVNSVCFHPSGLAFATGSEDK----T 1889 (2004)
Q Consensus 1816 i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~t--l~~h~s~ItsIafSPdg~~LaSgS~DG----t 1889 (2004)
+..+ .|.+.|.+++|+|+|+++++++.+ .+.+|+..++..+.. ...|...|.+++|+|+++++++++.|+ .
T Consensus 170 ~~~~--~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~ 246 (365)
T 4h5i_A 170 KFEI--ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIV 246 (365)
T ss_dssp EEEE--ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEE
T ss_pred EEEe--CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeE
Confidence 7665 577889999999999999999854 567777777665543 356888999999999999999999887 6
Q ss_pred EEEEEccCCceeE--EEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-ccCCCCeEEEEEcCCCCE
Q psy8748 1890 ARLFDIRADQQIA--TYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVL-SGHENRVTSISLSPNGMA 1966 (2004)
Q Consensus 1890 IrIWDLrtgk~i~--t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL-~gHs~~VtsLaFSPDg~~ 1966 (2004)
++.||+..+.... ......+...|++++|+|+|++||+|+.||+|+|||+.+++++..+ .+|...|++++|+|||++
T Consensus 247 i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~ 326 (365)
T 4h5i_A 247 LTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY 326 (365)
T ss_dssp EEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE
T ss_pred EeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE
Confidence 8889987665422 2223466678999999999999999999999999999999999885 789999999999999999
Q ss_pred EEEEECCCeEEEEECCC
Q psy8748 1967 LVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1967 LaSgS~DGtIrIWdlst 1983 (2004)
||||+.|++|+||++..
T Consensus 327 laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 327 VASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEETTSEEEEEECCT
T ss_pred EEEEeCCCeEEEEEcCC
Confidence 99999999999999964
No 89
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.6e-29 Score=304.59 Aligned_cols=249 Identities=18% Similarity=0.262 Sum_probs=215.0
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++.+++|+.||.|++||+...
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~---- 206 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIA---- 206 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS----
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccC----
Confidence 77899999999999999999999999999999999999999999999999994 789999999999999999753
Q ss_pred cceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC-EEEEEE--CCC
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ-YFVTGS--VDK 1846 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~-~LaSGS--~DG 1846 (2004)
......+.+|...+.++.|+++ ..+++|+.||.|++||+.+++.... ...|...|.+++|+|++. ++++|+ .||
T Consensus 207 -~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 207 -NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT-KTNHNAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp -SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE-ECCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred -cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE-ecCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence 2456778889999999999965 5689999999999999999887744 467899999999999765 555654 699
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1847 SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS--EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS--~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
.|++||+++++.+..+. +...|.+++|+|+++++++++ .||.|++||+.+++.........|...|.+++|+|+|++
T Consensus 285 ~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 363 (401)
T 4aez_A 285 QIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRI 363 (401)
T ss_dssp EEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSE
T ss_pred EEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCE
Confidence 99999999999888884 677899999999999999954 899999999998777666555677789999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEE
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVL 1948 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL 1948 (2004)
|++|+.||.|++||+.+++.+...
T Consensus 364 l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 364 LSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECTTSEEEEEECCC-------
T ss_pred EEEEeCCCcEEEEECCCCcccccc
Confidence 999999999999999998877654
No 90
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.8e-29 Score=289.44 Aligned_cols=306 Identities=17% Similarity=0.160 Sum_probs=224.4
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1550 APEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1550 a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
...+|++.|++++|+|+|++||+ |+.||+|++||+.+ +..
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~-~~~dg~i~iw~~~~-------------~~~-------------------------- 45 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVAT-CSSDQHIKVFKLDK-------------DTS-------------------------- 45 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEE-EETTSEEEEEEECS-------------SSC--------------------------
T ss_pred cCcccccceeEEEEcCCCCEEEE-eeCCCeEEEEECCC-------------CCC--------------------------
Confidence 34579999999999999999999 99999999999876 000
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeC--CCCEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG--DSRHC 1707 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSP--DG~~L 1707 (2004)
.......+.+|.+.|++++|+| ++++|
T Consensus 46 ---------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~d~~~l 74 (351)
T 3f3f_A 46 ---------------------------------------------------NWELSDSWRAHDSSIVAIDWASPEYGRII 74 (351)
T ss_dssp ---------------------------------------------------CEEEEEEEECCSSCEEEEEECCGGGCSEE
T ss_pred ---------------------------------------------------cceecceeccCCCcEEEEEEcCCCCCCEE
Confidence 0012345678999999999999 69999
Q ss_pred EEEeCCCeEEEEECCCC---------ceEEEeeCCCCceEEEEEecC--CCEEEEeecCCeEEEEEcCCCCCCCcceEEE
Q psy8748 1708 VSGSLDGKLIIWDTWTG---------NKTQVIPLRSAWVMSVAFAQS--GNFVACGGMDNMCTVYDLNNRDSTGAAKVIR 1776 (2004)
Q Consensus 1708 ASGS~DGtIrVWDl~Tg---------k~l~ti~~Ht~~ItsLafSPd--g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~ 1776 (2004)
++|+.||.|++||+.++ +....+..|...|.+++|+|+ ++++++++.||.|++||+.++..........
T Consensus 75 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 154 (351)
T 3f3f_A 75 ASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTS 154 (351)
T ss_dssp EEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEE
T ss_pred EEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccc
Confidence 99999999999999887 557788899999999999999 9999999999999999998776544433322
Q ss_pred EE-------ecCccceeeeEEeC----CCcEEEeecCCeEEEEECCCCcee-EEeeccccCCeEEEEECCCC----CEEE
Q psy8748 1777 EL-------LGYEGFLSSCRFID----DTTLLTGSGDMKIVTWNLETGQRI-HEVAQAHIGDVVSISLSPDG----QYFV 1840 (2004)
Q Consensus 1777 sl-------~gh~~~Vssvafsd----d~~LlSgS~DGtI~IWDl~tg~~i-~~il~~h~~~ItsLafSPdg----~~La 1840 (2004)
.. .++...+.++.|.+ +..+++++.++.+.+|+...+... .....+|...|++++|+|++ ++|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~ 234 (351)
T 3f3f_A 155 EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA 234 (351)
T ss_dssp EEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred cccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence 22 25677888999986 567999999999988888777642 34456799999999999998 8999
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE----CCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1841 TGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS----EDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1841 SGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS----~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
+|+.||.|++||++.+........+..........+.......+. ..+.+.+|+....+.+..+ ..|...|+++
T Consensus 235 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~ 312 (351)
T 3f3f_A 235 TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH--DDHNGEVWSV 312 (351)
T ss_dssp EEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE--CTTSSCEEEE
T ss_pred EEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE--ecccccEEEE
Confidence 999999999999987665444444334444444444443333333 3445666666666666666 4567889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE
Q psy8748 1917 AVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVL 1948 (2004)
Q Consensus 1917 afSPdG~~LaSGSsDGsIrIWDL~tge~l~tL 1948 (2004)
+|+|+|++|++|+.||.|++||+.+++....+
T Consensus 313 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 313 SWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 99999999999999999999999887554443
No 91
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=4.6e-29 Score=292.12 Aligned_cols=260 Identities=21% Similarity=0.309 Sum_probs=217.1
Q ss_pred EEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC---CCcEEEeecCCe
Q psy8748 1728 QVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID---DTTLLTGSGDMK 1804 (2004)
Q Consensus 1728 ~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd---d~~LlSgS~DGt 1804 (2004)
..+.+|.+.|.+++|+|+|++|++|+.||.|++|++... .......+.+|.+.|.++.|.+ +..+++|+.||+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~----~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE----THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS----CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC----CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 356789999999999999999999999999999999743 2345677889999999999973 567999999999
Q ss_pred EEEEECCCCce-eEEeeccccCCeEEEEECCC--CCEEEEEECCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCC--
Q psy8748 1805 IVTWNLETGQR-IHEVAQAHIGDVVSISLSPD--GQYFVTGSVDKSCKLWDFREKK--CVQTFFGHEADVNSVCFHPS-- 1877 (2004)
Q Consensus 1805 I~IWDl~tg~~-i~~il~~h~~~ItsLafSPd--g~~LaSGS~DGsIrIWDlrs~k--~I~tl~~h~s~ItsIafSPd-- 1877 (2004)
|++||+.+++. .......|...|.+++|+|+ +.+|++|+.||.|++||++++. ....+.+|...|.+++|+|+
T Consensus 79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (297)
T ss_dssp EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence 99999988752 22335678999999999997 8899999999999999998753 24567789999999999997
Q ss_pred -----------CCEEEEEECCCeEEEEEccCCc----eeEEEcCCCCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEEC
Q psy8748 1878 -----------GLAFATGSEDKTARLFDIRADQ----QIATYLPPNKNSGFTSCAVSSSG---RYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1878 -----------g~~LaSgS~DGtIrIWDLrtgk----~i~t~~~~~~~s~ItsLafSPdG---~~LaSGSsDGsIrIWDL 1939 (2004)
+++|++|+.||+|++||+++++ ....+ ..|...|.+++|+|++ ++|++|+.||+|++||+
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 5799999999999999998766 33344 5677899999999984 89999999999999999
Q ss_pred CCCe---eeEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEee
Q psy8748 1940 LKTT---HNGVL--SGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVY 1993 (2004)
Q Consensus 1940 ~tge---~l~tL--~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~ 1993 (2004)
.+.. ....+ ..|...|.+++|+|+|++|++++.||.|++|+......|+.+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~~~~~ 295 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEC---
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEecccc
Confidence 7643 12233 468889999999999999999999999999998855557665543
No 92
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2e-28 Score=283.49 Aligned_cols=245 Identities=16% Similarity=0.293 Sum_probs=209.4
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCC
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS 1768 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~ 1768 (2004)
.+|...|++++|+|+++++++|+.||+|++||+.+++.+..+.+|...+.++.+ ++..+++|+.++.+++|+....
T Consensus 64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~-- 139 (318)
T 4ggc_A 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA-- 139 (318)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS--
T ss_pred cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCC--
Confidence 458889999999999999999999999999999999999999999998876555 5789999999999999998754
Q ss_pred CCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCcee---EEeeccccCCeEEEEECCCCCEE---EE
Q psy8748 1769 TGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRI---HEVAQAHIGDVVSISLSPDGQYF---VT 1841 (2004)
Q Consensus 1769 ~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i---~~il~~h~~~ItsLafSPdg~~L---aS 1841 (2004)
......+.+|...+..+.+... ..+++++.||.|++||+.+++.. ......+.+.|.++++++++..+ ++
T Consensus 140 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 216 (318)
T 4ggc_A 140 ---EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 216 (318)
T ss_dssp ---SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred ---ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe
Confidence 3556777889999999998854 56889999999999999887533 22345677889999999976533 35
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEc
Q psy8748 1842 GSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS--EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVS 1919 (2004)
Q Consensus 1842 GS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS--~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafS 1919 (2004)
++.++.|++||.+........ .+...+..+.|++++..+++++ .||.|++||+++++.+..+ .+|...|++++|+
T Consensus 217 ~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l--~gH~~~V~~l~~s 293 (318)
T 4ggc_A 217 GTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL--KGHTSRVLSLTMS 293 (318)
T ss_dssp CTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE--CCCSSCEEEEEEC
T ss_pred cCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE--cCCCCCEEEEEEc
Confidence 667899999999988766554 5678899999999999887765 7999999999999999888 4677899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCe
Q psy8748 1920 SSGRYIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1920 PdG~~LaSGSsDGsIrIWDL~tge 1943 (2004)
|+|++|++|+.||+|+|||+.+..
T Consensus 294 pdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 294 PDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp TTSSCEEEEETTTEEEEECCSCCC
T ss_pred CCCCEEEEEecCCeEEEEECCCCC
Confidence 999999999999999999987653
No 93
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=307.73 Aligned_cols=294 Identities=15% Similarity=0.232 Sum_probs=231.9
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
|.+.|++++|+|+|++||+ |+.||.|+|||+.+ ++....
T Consensus 27 ~~~~V~~v~~s~~g~~la~-g~~dg~v~iw~~~~-------------~~~~~~--------------------------- 65 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLAT-GDKGGRVVIFQQEQ-------------ENKIQS--------------------------- 65 (447)
T ss_dssp GGGSEEEEEECSSSSEEEE-EETTSEEEEEEECC------------------C---------------------------
T ss_pred ccCcEEEEEECCCCCEEEE-EcCCCeEEEEEecC-------------CCCCCc---------------------------
Confidence 5678999999999999999 99999999999987 110000
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccc------------cceeEEEEe
Q psy8748 1634 NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHI------------NKVNSVHYS 1701 (2004)
Q Consensus 1634 di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt------------~~VtsLaFS 1701 (2004)
.....+.....+.+|. +.|++++|+
T Consensus 66 -------------------------------------------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 66 -------------------------------------------HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp -------------------------------------------CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred -------------------------------------------ccccceeEecccccccccccccccccccCceEEEEEc
Confidence 0001122345566776 889999999
Q ss_pred CCC--CEEEEEeCCCeEEEEECCCCceE---------------------------------------EE-eeCCCCceEE
Q psy8748 1702 GDS--RHCVSGSLDGKLIIWDTWTGNKT---------------------------------------QV-IPLRSAWVMS 1739 (2004)
Q Consensus 1702 PDG--~~LASGS~DGtIrVWDl~Tgk~l---------------------------------------~t-i~~Ht~~Its 1739 (2004)
|++ .+|++++.||.|++||+.++... .. ..+|...|.+
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 998 79999999999999998764432 12 3679999999
Q ss_pred EEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEE-------EEecCccceeeeEEeCC--CcEEEeecCCeEEEEEC
Q psy8748 1740 VAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIR-------ELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNL 1810 (2004)
Q Consensus 1740 LafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~-------sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl 1810 (2004)
++|+|++++|++| .||.|++||+.... .... .+.+|...+.++.|+++ ..+++|+.||.|++||+
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEITD-----RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTEEE-----EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCCCC-----ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 9999999999998 79999999997321 2222 25578899999999976 47999999999999999
Q ss_pred CCCcee---EEeeccccC------------CeEEEEECCCCCEEEEEECCCeEEEEECCC-CeEEEEEecCCCC------
Q psy8748 1811 ETGQRI---HEVAQAHIG------------DVVSISLSPDGQYFVTGSVDKSCKLWDFRE-KKCVQTFFGHEAD------ 1868 (2004)
Q Consensus 1811 ~tg~~i---~~il~~h~~------------~ItsLafSPdg~~LaSGS~DGsIrIWDlrs-~k~I~tl~~h~s~------ 1868 (2004)
++++.. ...+..|.. .|.+++|+|++++|++++. |.|++||++. ++.+..+.+|...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 988751 133455554 8999999999999999998 9999999997 8888888777532
Q ss_pred ---------eEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC------------------------------CCC
Q psy8748 1869 ---------VNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP------------------------------PNK 1909 (2004)
Q Consensus 1869 ---------ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~------------------------------~~~ 1909 (2004)
+..++|+|++++|++|+.||.|++||+.+++.+..... ...
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDF 415 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCT
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccccccccc
Confidence 23499999999999999999999999998877542211 122
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
...|..++|+|+|++|++|+.++ +++|..
T Consensus 416 ~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 416 NKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred CCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 35688999999999999998876 888874
No 94
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-29 Score=296.18 Aligned_cols=266 Identities=19% Similarity=0.237 Sum_probs=222.7
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECC--CCceEEEeeCCCCceEEEEEecC--CCEEEEeecCCeEE
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTW--TGNKTQVIPLRSAWVMSVAFAQS--GNFVACGGMDNMCT 1759 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~--Tgk~l~ti~~Ht~~ItsLafSPd--g~~LaSGS~DGtIr 1759 (2004)
+...+.+|.+.|++++|+|++++|++|+.||.|++||+. +++....+.+|...|.+++|+++ +++|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 467789999999999999999999999999999999998 56777888999999999999977 89999999999999
Q ss_pred EEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC--CC
Q psy8748 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD--GQ 1837 (2004)
Q Consensus 1760 VWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd--g~ 1837 (2004)
+||+.++. . ........|...|.+++|+|+ ++
T Consensus 83 iwd~~~~~------~----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~ 116 (379)
T 3jrp_A 83 IWKEENGR------W----------------------------------------SQIAVHAVHSASVNSVQWAPHEYGP 116 (379)
T ss_dssp EEEEETTE------E----------------------------------------EEEEEECCCSSCEEEEEECCGGGCS
T ss_pred EEEcCCCc------e----------------------------------------eEeeeecCCCcceEEEEeCCCCCCC
Confidence 99986421 0 011223457788999999999 99
Q ss_pred EEEEEECCCeEEEEECCCC--eEEEEEecCCCCeEEEEEeC-------------CCCEEEEEECCCeEEEEEccCCceeE
Q psy8748 1838 YFVTGSVDKSCKLWDFREK--KCVQTFFGHEADVNSVCFHP-------------SGLAFATGSEDKTARLFDIRADQQIA 1902 (2004)
Q Consensus 1838 ~LaSGS~DGsIrIWDlrs~--k~I~tl~~h~s~ItsIafSP-------------dg~~LaSgS~DGtIrIWDLrtgk~i~ 1902 (2004)
++++++.||.|++||++.+ .....+..|...|.+++|+| ++.++++++.||.|++||++++....
T Consensus 117 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 196 (379)
T 3jrp_A 117 LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 196 (379)
T ss_dssp EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE
T ss_pred EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce
Confidence 9999999999999999877 34556678999999999999 69999999999999999998765432
Q ss_pred E--EcCCCCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCCCe---eeEEE--ccCCCCeEEEEEcCCCCEEEEEEC
Q psy8748 1903 T--YLPPNKNSGFTSCAVSSS---GRYIFCGSDDNNVHVWDLLKTT---HNGVL--SGHENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1903 t--~~~~~~~s~ItsLafSPd---G~~LaSGSsDGsIrIWDL~tge---~l~tL--~gHs~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
. .....|...|.+++|+|+ +++|++|+.||.|++||+.++. ..... ..|...|++++|+|++++|++++.
T Consensus 197 ~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 197 VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred eeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence 1 222466788999999999 8999999999999999998864 22222 348899999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEEeecC
Q psy8748 1973 DQFVKVWQESNTIVWKVLKVYNL 1995 (2004)
Q Consensus 1973 DGtIrIWdlstg~l~k~Ik~~~~ 1995 (2004)
||.|++|++..+..|..+.....
T Consensus 277 dg~i~iw~~~~~~~~~~~~~~~~ 299 (379)
T 3jrp_A 277 DNKVTLWKENLEGKWEPAGEVHQ 299 (379)
T ss_dssp SSSEEEEEEEETTEEEEEEEEC-
T ss_pred CCcEEEEeCCCCCccccccceec
Confidence 99999999997767777665543
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=5.8e-29 Score=291.65 Aligned_cols=287 Identities=12% Similarity=0.117 Sum_probs=238.2
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|++.|++++|+|+|++||+ |+.||+|++|++.. +..
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~-~~~d~~v~iw~~~~-------------~~~---------------------------- 45 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLI-TSWDGSLTVYKFDI-------------QAK---------------------------- 45 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEE-EETTSEEEEEEEET-------------TTT----------------------------
T ss_pred cCCCCcEEEEEEcCCCCEEEE-EcCCCeEEEEEeCC-------------CCc----------------------------
Confidence 468899999999999999999 99999999999877 100
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCC-EEEEE
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSR-HCVSG 1710 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~-~LASG 1710 (2004)
..+...+.+|...|++++|+|+++ +|++|
T Consensus 46 --------------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 46 --------------------------------------------------NVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp --------------------------------------------------EEEEEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred --------------------------------------------------cccceeeeecCCceEEEEECCCCCcEEEEE
Confidence 001123347899999999999999 99999
Q ss_pred eCCCeEEEEEC-CCCceEEEeeC--CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc---ceEEEEEecCccc
Q psy8748 1711 SLDGKLIIWDT-WTGNKTQVIPL--RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA---AKVIRELLGYEGF 1784 (2004)
Q Consensus 1711 S~DGtIrVWDl-~Tgk~l~ti~~--Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~---~k~i~sl~gh~~~ 1784 (2004)
+.||.|++||+ .+++. ..+.. |...|.+++|+| ++.+++++.||.|++||+........ ......+ .+...
T Consensus 76 ~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~ 152 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-KVKNK 152 (342)
T ss_dssp ETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-SSCCC
T ss_pred cCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE-eeCCc
Confidence 99999999999 77755 67788 999999999999 99999999999999999875100000 1111122 27788
Q ss_pred eeeeEEeCCCcEEEeecCCeEEEEECCC-Cce-eEEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCC-----
Q psy8748 1785 LSSCRFIDDTTLLTGSGDMKIVTWNLET-GQR-IHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREK----- 1856 (2004)
Q Consensus 1785 Vssvafsdd~~LlSgS~DGtI~IWDl~t-g~~-i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~----- 1856 (2004)
+.++.|.++. +++++.+|.|++||+++ +.. .......|...+.+++|+| +++++++++.||.|++||++..
T Consensus 153 v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 153 IFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp EEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred eEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 9999998776 99999999999999998 553 2334457888999999999 9999999999999999999876
Q ss_pred -eEEEEEecCCC---------CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCC-CCCeEEEEEcCCCCEE
Q psy8748 1857 -KCVQTFFGHEA---------DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNK-NSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1857 -k~I~tl~~h~s---------~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~-~s~ItsLafSPdG~~L 1925 (2004)
+....+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+. .+ ...|.+++ |+|++|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~~~--~~~~~l 307 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA--KFNEDSVVKIA--CSDNIL 307 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--CCSSSEEEEEE--ECSSEE
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh--cccCCCceEec--CCCCeE
Confidence 67777877765 99999999999999999999999999999999887763 44 67899998 999999
Q ss_pred EEEeCCCe-EEEEE
Q psy8748 1926 FCGSDDNN-VHVWD 1938 (2004)
Q Consensus 1926 aSGSsDGs-IrIWD 1938 (2004)
++|+.||. .+.|.
T Consensus 308 ~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 308 CLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEECTHHHHCSS
T ss_pred EEEecCCccccccc
Confidence 99999998 44444
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6.3e-29 Score=292.08 Aligned_cols=291 Identities=12% Similarity=0.165 Sum_probs=239.6
Q ss_pred ccccccccccccccceeEEEEeCC---CCEEEEEeCCCeEEEEECCC-CceE-EEeeCCCCceEEEEEecCCCEEEEeec
Q psy8748 1680 VKLMPKKSLKGHINKVNSVHYSGD---SRHCVSGSLDGKLIIWDTWT-GNKT-QVIPLRSAWVMSVAFAQSGNFVACGGM 1754 (2004)
Q Consensus 1680 lk~~pi~sL~GHt~~VtsLaFSPD---G~~LASGS~DGtIrVWDl~T-gk~l-~ti~~Ht~~ItsLafSPdg~~LaSGS~ 1754 (2004)
.+......+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +... ..+.+|...|.+++|+|++++|++|+.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 345567789999999999999999 69999999999999999987 5555 678899999999999999999999999
Q ss_pred CCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE--eCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEE
Q psy8748 1755 DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF--IDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSIS 1831 (2004)
Q Consensus 1755 DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf--sdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLa 1831 (2004)
||.|++||+.++. .....+|...+.++.| .++ ..+++++.||.|++||+++++.+..+. ....+.++.
T Consensus 107 dg~v~iwd~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~ 177 (368)
T 3mmy_A 107 DKTAKMWDLSSNQ-------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ--LPERCYCAD 177 (368)
T ss_dssp TSEEEEEETTTTE-------EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE--CSSCEEEEE
T ss_pred CCcEEEEEcCCCC-------ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe--cCCCceEEE
Confidence 9999999997642 2335678999999999 544 458999999999999999988775552 334666666
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeEEEEE--ecCCCCeEEEEEeCCCCE----EEEEECCCeEEEEEccCC---ceeE
Q psy8748 1832 LSPDGQYFVTGSVDKSCKLWDFREKKCVQTF--FGHEADVNSVCFHPSGLA----FATGSEDKTARLFDIRAD---QQIA 1902 (2004)
Q Consensus 1832 fSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl--~~h~s~ItsIafSPdg~~----LaSgS~DGtIrIWDLrtg---k~i~ 1902 (2004)
+. +..+++++.++.+++||++........ ..+...+.++++.+++.. +++++.||.|++||++.. ....
T Consensus 178 ~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 178 VI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF 255 (368)
T ss_dssp EE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred ec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence 66 458899999999999999876543332 234456677777665544 999999999999999877 3444
Q ss_pred EEcCCCC----------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEEC
Q psy8748 1903 TYLPPNK----------NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1903 t~~~~~~----------~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
.+..+.. ...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|...|++++|+|+|++|++|+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence 4432211 116999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEC
Q psy8748 1973 DQFVKVWQE 1981 (2004)
Q Consensus 1973 DGtIrIWdl 1981 (2004)
|+..+.|++
T Consensus 336 d~~~~~~~~ 344 (368)
T 3mmy_A 336 YDWSKGHEF 344 (368)
T ss_dssp CCSTTCGGG
T ss_pred ccccccccc
Confidence 886555554
No 97
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=309.72 Aligned_cols=290 Identities=11% Similarity=0.191 Sum_probs=236.6
Q ss_pred CCCCCCeEEEEEcc-CCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1552 EPCKEQRNAVSFHA-CSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSP-dGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
+.|.+.|++++|+| +|++||+ |+.||+|+|||+.+ .. .+
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s-~s~dg~v~vwd~~~-------------~~-----~~--------------------- 99 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLIT-GSDQGVIKIWNLKE-------------II-----VG--------------------- 99 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEE-EETTSEEEEEEHHH-------------HH-----TT---------------------
T ss_pred cCCCCceEEEEECCCCCCEEEE-ecCCceEEEeECcc-------------cc-----cC---------------------
Confidence 56889999999999 9999999 99999999999866 00 00
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
....+...+ +|.+.|++++|+|++++|++|
T Consensus 100 -------------------------------------------------~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 100 -------------------------------------------------EVYSSSLTY-DCSSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp -------------------------------------------------CCCSCSEEE-ECSSCEEEEEECTTSSEEEEE
T ss_pred -------------------------------------------------cccceeeec-cCCCCEEEEEEeCCCCEEEEE
Confidence 000011112 489999999999999999999
Q ss_pred eCCCeEEEEECC---CCceEEEeeC------------CCCceEEEE--EecCCCEEEEeecCCeEEEEEcCCCCCCCcce
Q psy8748 1711 SLDGKLIIWDTW---TGNKTQVIPL------------RSAWVMSVA--FAQSGNFVACGGMDNMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1711 S~DGtIrVWDl~---Tgk~l~ti~~------------Ht~~ItsLa--fSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k 1773 (2004)
+.||.|++||+. +++....... +...+.++. ++++++++++|+.||.|++||+.++ .
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~ 203 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL------E 203 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC------C
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------e
Confidence 999999999984 5655543332 455667776 5578999999999999999999764 4
Q ss_pred EEEEEec--CccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC----CCCEEEEEECCC
Q psy8748 1774 VIRELLG--YEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP----DGQYFVTGSVDK 1846 (2004)
Q Consensus 1774 ~i~sl~g--h~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP----dg~~LaSGS~DG 1846 (2004)
....+.+ |...+.+++|+++ ..+++|+.||.|++||+++++.+..+...|...|.+++|+| ++.++++|+.||
T Consensus 204 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 204 RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC
Confidence 5566666 7899999999865 46889999999999999998887666557778999996665 677999999999
Q ss_pred eEEEEECCCCeEEEEEec--------------------------CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce
Q psy8748 1847 SCKLWDFREKKCVQTFFG--------------------------HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ 1900 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~--------------------------h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~ 1900 (2004)
.|++||+++++.+..+.+ |...|.+++|+ ++++|++|+.||.|++||+.+++.
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence 999999999998887764 44568889999 778999999999999999999887
Q ss_pred eEEEcCC-----------------------------------CCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEE
Q psy8748 1901 IATYLPP-----------------------------------NKNSGFTSCAVSSS--GRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1901 i~t~~~~-----------------------------------~~~s~ItsLafSPd--G~~LaSGSsDGsIrIWD 1938 (2004)
...+..+ .|...|++++|+++ +.+|++|+.||.|++|+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 363 SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 7666432 16788999999998 78999999999999995
No 98
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=8.1e-29 Score=304.72 Aligned_cols=256 Identities=22% Similarity=0.410 Sum_probs=209.8
Q ss_pred cccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCC
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
.+.+|.+.|.+++| +++++++|+.||.|++||+.+++....+.+|...|.+++|+ ++.+++|+.||.|++||+.++
T Consensus 168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~ 243 (435)
T 1p22_A 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASP 243 (435)
T ss_dssp EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSS
T ss_pred EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCC
Confidence 34579999999998 78899999999999999999999999999999999999997 569999999999999999865
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK 1846 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG 1846 (2004)
. .........+|...+.++.+ +++.+++|+.||.|++||+++++.+.. ..+|...|.+++++ ++++++|+.||
T Consensus 244 ~---~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~~g~~dg 316 (435)
T 1p22_A 244 T---DITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRT-LNGHKRGIACLQYR--DRLVVSGSSDN 316 (435)
T ss_dssp S---CCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEEE--TTEEEEEETTS
T ss_pred C---CceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcEEEE-EcCCCCcEEEEEeC--CCEEEEEeCCC
Confidence 4 33444677889999999999 677899999999999999999988754 46889999999994 78999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc---------eeEEEcCCCCCCCeEEEE
Q psy8748 1847 SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ---------QIATYLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk---------~i~t~~~~~~~s~ItsLa 1917 (2004)
.|++||+++++.+..+.+|...|.+++| ++.++++|+.||.|++||+.++. ....+ ..|...|.+++
T Consensus 317 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~ 392 (435)
T 1p22_A 317 TIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL--VEHSGRVFRLQ 392 (435)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE--CCCSSCCCCEE
T ss_pred eEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec--cCCCCCeEEEE
Confidence 9999999999999999999999999999 78899999999999999998765 55555 45667899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEE
Q psy8748 1918 VSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1918 fSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaF 1960 (2004)
| ++++|++|+.||.|++||+.+........ ...+..++.|
T Consensus 393 ~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~ 432 (435)
T 1p22_A 393 F--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTY 432 (435)
T ss_dssp E--CSSCEEECCSSSEEEEEC----------------------
T ss_pred e--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceee
Confidence 9 78899999999999999998766544332 2234444444
No 99
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.1e-29 Score=300.44 Aligned_cols=269 Identities=21% Similarity=0.223 Sum_probs=211.6
Q ss_pred ccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eEEEeeCCCCceEEEEEec--CCCEEEEeecCCeEEEE
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQ--SGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSP--dg~~LaSGS~DGtIrVW 1761 (2004)
..+.+|.+.|++++|+|+|++||+|+.||+|++||+.++. .+..+.+|.+.|.+++|++ ++++|++|+.||.|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3567999999999999999999999999999999998875 4677899999999999986 48999999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCC---CcEEEeecCCeEEEEECCCCcee--EEeeccccCCeEEEEECCC-
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD---TTLLTGSGDMKIVTWNLETGQRI--HEVAQAHIGDVVSISLSPD- 1835 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd---~~LlSgS~DGtI~IWDl~tg~~i--~~il~~h~~~ItsLafSPd- 1835 (2004)
|++++. ......+.+|...|.+++|+++ ..+++|+.||.|++||+..+... .....+|...|.+++|+|+
T Consensus 87 d~~~~~----~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 87 REENGT----WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp CCSSSC----CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred ECCCCc----ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 997542 2345567889999999999864 46999999999999999876432 2445678899999999997
Q ss_pred ----------------CCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeEEEEEeCCC----CEEEEEECCCeEEE
Q psy8748 1836 ----------------GQYFVTGSVDKSCKLWDFREK---KCVQTFFGHEADVNSVCFHPSG----LAFATGSEDKTARL 1892 (2004)
Q Consensus 1836 ----------------g~~LaSGS~DGsIrIWDlrs~---k~I~tl~~h~s~ItsIafSPdg----~~LaSgS~DGtIrI 1892 (2004)
+++|++|+.||.|++||++.. +.+..+.+|...|.+++|+|++ .+|++++.||+|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 478999999999999999755 4667788999999999999986 78889999999999
Q ss_pred EEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEEC
Q psy8748 1893 FDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1893 WDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
||+.+.... . .....+..|.+.|.+++|+|++++|++|+.
T Consensus 243 w~~~~~~~~---------------------~-------------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 243 WTCDDASSN---------------------T-------------------WSPKLLHKFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp EECSSTTCC---------------------C-------------------CBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred EEccCcccc---------------------c-------------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence 987643110 0 000112346778889999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEEeecCCCC
Q psy8748 1973 DQFVKVWQESNTIVWKVLKVYNLEKK 1998 (2004)
Q Consensus 1973 DGtIrIWdlstg~l~k~Ik~~~~h~~ 1998 (2004)
||.|++|+......|..++.+....+
T Consensus 283 D~~v~lw~~~~~g~~~~~~~~~~~~~ 308 (316)
T 3bg1_A 283 DNKVTLWKESVDGQWVCISDVNKGQG 308 (316)
T ss_dssp SSCEEEEEECTTSCEEEEEECC----
T ss_pred CCeEEEEEECCCCcEEEeeeccCCCC
Confidence 99999998875555777777665444
No 100
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.1e-28 Score=299.76 Aligned_cols=296 Identities=15% Similarity=0.210 Sum_probs=243.8
Q ss_pred cceeEEEEeCCCCEE-EEEeCCCeEEEEECCCC----ceEEEeeCCCCceEEEEEec-CCCEEEEeecCCeEEEEEcCCC
Q psy8748 1693 NKVNSVHYSGDSRHC-VSGSLDGKLIIWDTWTG----NKTQVIPLRSAWVMSVAFAQ-SGNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~L-ASGS~DGtIrVWDl~Tg----k~l~ti~~Ht~~ItsLafSP-dg~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
.....++++|+...+ ++++.||.|+||++.+. .....+.+|.+.|.+++|+| ++++|++|+.||.|++|++..+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 345578898877644 45788999999998664 23445678999999999999 8999999999999999999875
Q ss_pred CCCCc-ceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEee-ccccCCeEEEEECCCCCEEEEE
Q psy8748 1767 DSTGA-AKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEVA-QAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1767 ~~~~~-~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~il-~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
..... ......+.+|...+.++.|++++ .+++++.||.|++||+.+++....+. ..|...|.+++|+|++++|+++
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 32211 13456778899999999999764 68999999999999999998875553 6799999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEE-ecCCCC-eEEEEEeCCCCEEEEE---ECCCeEEEEEccCCceeEEEcCCCCCCCeEEEE
Q psy8748 1843 SVDKSCKLWDFREKKCVQTF-FGHEAD-VNSVCFHPSGLAFATG---SEDKTARLFDIRADQQIATYLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl-~~h~s~-ItsIafSPdg~~LaSg---S~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLa 1917 (2004)
+.||.|++||+++++.+..+ ..|.+. +.++.|+|++.++++| +.||.|++||+++++.........+...+.+++
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence 99999999999999999888 688775 8999999999999999 789999999999876532222234557799999
Q ss_pred EcCCCCEEEE-EeCCCeEEEEECCCCee-eEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1918 VSSSGRYIFC-GSDDNNVHVWDLLKTTH-NGVLSG--HENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1918 fSPdG~~LaS-GSsDGsIrIWDL~tge~-l~tL~g--Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
|+|+++++++ |+.||.|++||+.+++. +..+.. |...|.+++|+|++.++++ .|+.+++|++.++.. +.+.
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~-~~i~ 349 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC-EPIA 349 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE-EEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE-EEEE
Confidence 9999999975 55799999999998874 444443 5689999999999998775 567999999998753 4443
No 101
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.1e-28 Score=299.05 Aligned_cols=245 Identities=13% Similarity=0.129 Sum_probs=196.4
Q ss_pred cccccccceeEEEEeCCCCEEEEEe-----------CCCeEEEEECCCCceEEE----e-----eCCCCceEEEEEecCC
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGS-----------LDGKLIIWDTWTGNKTQV----I-----PLRSAWVMSVAFAQSG 1746 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS-----------~DGtIrVWDl~Tgk~l~t----i-----~~Ht~~ItsLafSPdg 1746 (2004)
.|.+|.+.|.+++++ ++.+++|+ .|+.+++|++.++..... . ..+...+.+++|+|||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 466788889888765 55666654 477899999866532211 1 1245568999999999
Q ss_pred CEEEE--eecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEE-eeccc
Q psy8748 1747 NFVAC--GGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHE-VAQAH 1823 (2004)
Q Consensus 1747 ~~LaS--GS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~-il~~h 1823 (2004)
+++++ ++.|+.|++||+.++ .....+ .|...|.+++|++++.+++.+.++.+++|+..++..... ....|
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~------~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~ 218 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDL------TEKFEI-ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDK 218 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTT------EEEEEE-ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCT
T ss_pred CEEEEEECCCCCEEEEeECCCC------cEEEEe-CCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCC
Confidence 98765 447899999999764 333444 467789999999887766666677788888887776543 34568
Q ss_pred cCCeEEEEECCCCCEEEEEECCC----eEEEEECCCCeE----EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEc
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVDK----SCKLWDFREKKC----VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDI 1895 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~DG----sIrIWDlrs~k~----I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDL 1895 (2004)
...|.+++|+|+++++++++.|+ .++.||...... ...+.+|...|++++|+|+|++|++|+.||+|+|||+
T Consensus 219 ~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 219 NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL 298 (365)
T ss_dssp TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC
Confidence 88899999999999999999887 688899876643 3456789999999999999999999999999999999
Q ss_pred cCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1896 RADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1896 rtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
++++.+..+. ..|...|++++|+|||++|++|+.|++|+|||+..
T Consensus 299 ~~~~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 299 KDLSMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTTEEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCcEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999887763 46778999999999999999999999999999854
No 102
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=3.2e-28 Score=286.04 Aligned_cols=286 Identities=18% Similarity=0.237 Sum_probs=232.1
Q ss_pred CCCCCCCCeEEEEEccC---CCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccc
Q psy8748 1550 APEPCKEQRNAVSFHAC---STLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLM 1626 (2004)
Q Consensus 1550 a~e~Hk~~VtsVsFSPd---Gk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll 1626 (2004)
....|.+.|++++|+|+ |++||+ |+.||+|++||+.+ .+
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~-~~~dg~i~iw~~~~--------------------~~----------------- 75 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIA-GSWANDVRCWEVQD--------------------SG----------------- 75 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEE-EETTSEEEEEEECT--------------------TS-----------------
T ss_pred eccCCCCceEEEEEcCCCCCceEEEE-ECCCCcEEEEEcCC--------------------CC-----------------
Confidence 44568999999999999 699999 99999999999876 00
Q ss_pred cCCCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCE
Q psy8748 1627 MKPTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRH 1706 (2004)
Q Consensus 1627 ~spdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~ 1706 (2004)
......+.+|.+.|++++|+|++++
T Consensus 76 -------------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~ 100 (368)
T 3mmy_A 76 -------------------------------------------------------QTIPKAQQMHTGPVLDVCWSDDGSK 100 (368)
T ss_dssp -------------------------------------------------------CEEEEEEEECSSCEEEEEECTTSSE
T ss_pred -------------------------------------------------------ceeEEEeccccCCEEEEEECcCCCE
Confidence 0012345679999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEE--ecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1707 CVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF--AQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLaf--SPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
|++|+.||.|++||+.+++... +..|...|.+++| +++++++++++.||.|++||+.++. ....+..+. .
T Consensus 101 l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~-~ 172 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN------PMMVLQLPE-R 172 (368)
T ss_dssp EEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS------CSEEEECSS-C
T ss_pred EEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc------EEEEEecCC-C
Confidence 9999999999999999988776 5669999999999 8899999999999999999998653 223333333 4
Q ss_pred eeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEe-eccccCCeEEEEECCCCCE----EEEEECCCeEEEEECCCC---
Q psy8748 1785 LSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV-AQAHIGDVVSISLSPDGQY----FVTGSVDKSCKLWDFREK--- 1856 (2004)
Q Consensus 1785 Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~i-l~~h~~~ItsLafSPdg~~----LaSGS~DGsIrIWDlrs~--- 1856 (2004)
+.++.+. ...+++++.++.+.+||+......... ...+...+.++++.+++.. +++++.||.|++||++..
T Consensus 173 ~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 173 CYCADVI-YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp EEEEEEE-TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred ceEEEec-CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence 5555554 347888999999999999877654333 2334455667766665544 999999999999999987
Q ss_pred eEEEEEecCCC------------CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1857 KCVQTFFGHEA------------DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1857 k~I~tl~~h~s------------~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
..+..+..|.. .|.+++|+|++++|++|+.||.|++||+++++.+..+. .+...|.+++|+|+|++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~ 329 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE--QLDQPISACCFNHNGNI 329 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--CCSSCEEEEEECTTSSC
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec--CCCCCceEEEECCCCCe
Confidence 45667777765 79999999999999999999999999999998887774 56688999999999999
Q ss_pred EEEEeCCCeEEEEEC
Q psy8748 1925 IFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL 1939 (2004)
|++|+.|+..+.|++
T Consensus 330 l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 330 FAYASSYDWSKGHEF 344 (368)
T ss_dssp EEEEECCCSTTCGGG
T ss_pred EEEEecccccccccc
Confidence 999999886555443
No 103
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=8.5e-29 Score=292.78 Aligned_cols=250 Identities=18% Similarity=0.202 Sum_probs=205.0
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..+|++.|++++|+|+|++||+ |+.|++|+|||+.+ +..
T Consensus 9 ~~~H~~~V~~v~~s~~g~~las-gs~D~~v~lwd~~~-------------~~~--------------------------- 47 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLAT-CSSDRSVKIFDVRN-------------GGQ--------------------------- 47 (316)
T ss_dssp -----CCEEEEEECGGGCEEEE-EETTTEEEEEEEET-------------TEE---------------------------
T ss_pred cccccCeEEEeeEcCCCCEEEE-EeCCCeEEEEEecC-------------CCc---------------------------
Confidence 3469999999999999999999 99999999999866 110
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeC--CCCEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG--DSRHCV 1708 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSP--DG~~LA 1708 (2004)
.....+.+|.+.|++++|++ ++++|+
T Consensus 48 ----------------------------------------------------~~~~~l~gH~~~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 48 ----------------------------------------------------ILIADLRGHEGPVWQVAWAHPMYGNILA 75 (316)
T ss_dssp ----------------------------------------------------EEEEEEECCSSCEEEEEECCGGGSSCEE
T ss_pred ----------------------------------------------------EEEEEEcCCCccEEEEEeCCCCCCCEEE
Confidence 01235678999999999986 489999
Q ss_pred EEeCCCeEEEEECCCC--ceEEEeeCCCCceEEEEEecC--CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1709 SGSLDGKLIIWDTWTG--NKTQVIPLRSAWVMSVAFAQS--GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1709 SGS~DGtIrVWDl~Tg--k~l~ti~~Ht~~ItsLafSPd--g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
+|+.||+|++||+.++ .....+.+|...|.+++|+|+ +.+|++|+.||.|++|++.... .........+|...
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~---~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG---QWEVKKINNAHTIG 152 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS---CEEECCBTTSSSSC
T ss_pred EEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC---CcceeeeeccccCC
Confidence 9999999999999887 456678899999999999998 7899999999999999997542 12223445678888
Q ss_pred eeeeEEeCC------------------CcEEEeecCCeEEEEECCCCc--eeEEeeccccCCeEEEEECCCC----CEEE
Q psy8748 1785 LSSCRFIDD------------------TTLLTGSGDMKIVTWNLETGQ--RIHEVAQAHIGDVVSISLSPDG----QYFV 1840 (2004)
Q Consensus 1785 Vssvafsdd------------------~~LlSgS~DGtI~IWDl~tg~--~i~~il~~h~~~ItsLafSPdg----~~La 1840 (2004)
+.++.|.++ ..+++|+.|+.|++||++.+. .....+.+|...|.+++|+|++ ++|+
T Consensus 153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~la 232 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 232 (316)
T ss_dssp BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEE
T ss_pred cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEE
Confidence 888888764 479999999999999997653 2234467899999999999986 8999
Q ss_pred EEECCCeEEEEECCCC---e-EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEcc
Q psy8748 1841 TGSVDKSCKLWDFREK---K-CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1841 SGS~DGsIrIWDlrs~---k-~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLr 1896 (2004)
+|+.||+|++||+++. . ....+..|...|.+++|+|++++|++++.||.|++|+..
T Consensus 233 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 233 SCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999999998762 1 123445788999999999999999999999999999975
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.8e-28 Score=284.49 Aligned_cols=254 Identities=19% Similarity=0.257 Sum_probs=215.5
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1550 APEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1550 a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
....|++.|++++|+|+|++||+ |+.||+|+|||+.. ..
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~-------------~~--------------------------- 44 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLAT-CSSDKTIKIFEVEG-------------ET--------------------------- 44 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEE-EETTSCEEEEEEET-------------TE---------------------------
T ss_pred EecCCcccEEEEEEcCCCCEEEE-EECCCcEEEEecCC-------------Cc---------------------------
Confidence 34569999999999999999999 99999999999864 00
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCC--CCEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGD--SRHC 1707 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPD--G~~L 1707 (2004)
......+.+|.+.|++++|+++ +++|
T Consensus 45 ----------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l 72 (379)
T 3jrp_A 45 ----------------------------------------------------HKLIDTLTGHEGPVWRVDWAHPKFGTIL 72 (379)
T ss_dssp ----------------------------------------------------EEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred ----------------------------------------------------ceeeeEecCCCCcEEEEEeCCCCCCCEE
Confidence 0013346679999999999987 9999
Q ss_pred EEEeCCCeEEEEECCCCc--eEEEeeCCCCceEEEEEecC--CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcc
Q psy8748 1708 VSGSLDGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQS--GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG 1783 (2004)
Q Consensus 1708 ASGS~DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPd--g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~ 1783 (2004)
++|+.||.|++||+.+++ ....+..|...|.+++|+|+ ++++++++.||.|++||+.... ........+|..
T Consensus 73 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~~~~~ 148 (379)
T 3jrp_A 73 ASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG----TTSPIIIDAHAI 148 (379)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS----CCCEEEEECCTT
T ss_pred EEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC----ceeeEEecCCCC
Confidence 999999999999999987 77778889999999999999 9999999999999999998653 223345678899
Q ss_pred ceeeeEEeC--------------CCcEEEeecCCeEEEEECCCCcee---EEeeccccCCeEEEEECCC---CCEEEEEE
Q psy8748 1784 FLSSCRFID--------------DTTLLTGSGDMKIVTWNLETGQRI---HEVAQAHIGDVVSISLSPD---GQYFVTGS 1843 (2004)
Q Consensus 1784 ~Vssvafsd--------------d~~LlSgS~DGtI~IWDl~tg~~i---~~il~~h~~~ItsLafSPd---g~~LaSGS 1843 (2004)
.+.++.|.+ +..+++++.||.|++||++++... .....+|...|.+++|+|+ ++++++++
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 999999997 567999999999999999876532 2345678999999999999 89999999
Q ss_pred CCCeEEEEECCCCe---EEEEE--ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce
Q psy8748 1844 VDKSCKLWDFREKK---CVQTF--FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ 1900 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~k---~I~tl--~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~ 1900 (2004)
.||.|++||++.+. ..... ..|...|.+++|+|++++|++++.||.|++||+..+..
T Consensus 229 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 99999999998763 22222 34888999999999999999999999999999986544
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-27 Score=296.61 Aligned_cols=252 Identities=13% Similarity=0.163 Sum_probs=208.2
Q ss_pred ccccccccceeEEEEeCCCCEE-EEEeCCCeEEEEECC--CCceEEEee--CCCCceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHC-VSGSLDGKLIIWDTW--TGNKTQVIP--LRSAWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~L-ASGS~DGtIrVWDl~--Tgk~l~ti~--~Ht~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
....+|.+.|++++|+|++++| ++|+.||.|++||+. +++....+. .|...|.+++|+|++++|++|+.+|.|++
T Consensus 96 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 96 LGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS 175 (450)
T ss_dssp ----CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence 3456799999999999999996 899999999999999 888888876 57789999999999999999999999999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC---CC
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD---GQ 1837 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd---g~ 1837 (2004)
|++........ ....+.+|...|.+++|+|+ ++
T Consensus 176 ~~~~~~~~~~~--------------------------------------------~~~~~~~h~~~v~~~~~sp~~~~~~ 211 (450)
T 2vdu_B 176 IDINSIPEEKF--------------------------------------------TQEPILGHVSMLTDVHLIKDSDGHQ 211 (450)
T ss_dssp EETTSCCCSSC--------------------------------------------CCCCSEECSSCEEEEEEEECTTSCE
T ss_pred EecCCcccccc--------------------------------------------cceeeecccCceEEEEEcCCCCCCc
Confidence 99865421100 00123467889999999999 99
Q ss_pred EEEEEECCCeEEEEECCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC---------
Q psy8748 1838 YFVTGSVDKSCKLWDFREKKCVQT-FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP--------- 1907 (2004)
Q Consensus 1838 ~LaSGS~DGsIrIWDlrs~k~I~t-l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~--------- 1907 (2004)
+|++|+.||.|++||+++++.+.. +.+|...|.+++|+ ++++|++++.||.|++||+++++.+..+...
T Consensus 212 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 290 (450)
T 2vdu_B 212 FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLND 290 (450)
T ss_dssp EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCT
T ss_pred EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhh
Confidence 999999999999999999888777 55899999999999 9999999999999999999999987776421
Q ss_pred --------------CCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEC--CCC---eeeEEEccCCCCeEEEEEcCCCCEE
Q psy8748 1908 --------------NKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDL--LKT---THNGVLSGHENRVTSISLSPNGMAL 1967 (2004)
Q Consensus 1908 --------------~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL--~tg---e~l~tL~gHs~~VtsLaFSPDg~~L 1967 (2004)
.....+..++|+|+++++++++ .|+.|++|++ ..+ +.+..+.+| +.|.+++|+|++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v 369 (450)
T 2vdu_B 291 QHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQV 369 (450)
T ss_dssp TSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEE
T ss_pred cccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEE
Confidence 2235689999999999999999 8999999999 565 777788888 899999999965434
Q ss_pred EEEEC------CCeEEEEECCC
Q psy8748 1968 VTSSW------DQFVKVWQESN 1983 (2004)
Q Consensus 1968 aSgS~------DGtIrIWdlst 1983 (2004)
++++. +..|.+|.+..
T Consensus 370 ~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 370 TLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EECCTTCCSSCCCSEEEEEEET
T ss_pred EEecccCCCCCCcceEEEEEEc
Confidence 43333 45688887653
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6e-29 Score=314.86 Aligned_cols=324 Identities=9% Similarity=0.078 Sum_probs=248.3
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.....+|++|+|||||+++|| ++.|++|+ |... +.++ ++|...+.. +..+|++
T Consensus 12 ~~~~~~v~sv~~SpDG~~iAS-as~D~TV~--d~~~-------------~~~l---~gh~~~v~~--------V~FsPdg 64 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLT-TFPDISIG--QPKY-------------AKDI---NCNSKNLFH--------VKEFPLE 64 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEE-CSSSEEEE--EECC-------------CSCC---SSBGGGTEE--------EEEECCC
T ss_pred hHhhccEEEEEECCCCCEEEE-EcCCceee--cccc-------------ccee---cCCCccEEE--------EEECCCC
Confidence 346679999999999999999 99999999 6444 2222 444443333 3335655
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
.... +..| .........+ +|...|.+++|||||++||+++
T Consensus 65 ~~~~-~~~~--------------------------------------~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s 104 (588)
T 2j04_A 65 FENK-LDFE--------------------------------------LAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLS 104 (588)
T ss_dssp CCCT-TTTS--------------------------------------CCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEE
T ss_pred Ccce-EEEE--------------------------------------eCCCceEeec-CCCCcEEEEEECCCCCEEEEEe
Confidence 1111 0000 0011111122 4688999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeeCCCC-----ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC-cceEEEEE----ecC
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSA-----WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG-AAKVIREL----LGY 1781 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~-----~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~-~~k~i~sl----~gh 1781 (2004)
.||.|++||... .+..+. |.. .|.+++|+|||++|++|+.||.|++|++..+.... .+-....+ .+|
T Consensus 105 ~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh 181 (588)
T 2j04_A 105 NNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGS 181 (588)
T ss_dssp TTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTC
T ss_pred CCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccc
Confidence 999999999544 666666 665 49999999999999999999999999998753111 11234554 667
Q ss_pred ccceeeeEEeCCCcEEEeecCCeEEEEECCCCcee---EEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1782 EGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRI---HEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC 1858 (2004)
Q Consensus 1782 ~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i---~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~ 1858 (2004)
...|.+++|++++ +++++.|+.|++||+..+... ..+..+|...|.+++|+ |+.+++++ +|.|++||+.+++.
T Consensus 182 ~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 182 KDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp CCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEE
T ss_pred cccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeE
Confidence 7899999999988 999999999999999887742 22334788899999999 68899887 69999999998887
Q ss_pred EEEEecCCCCeEEEEE--eCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy8748 1859 VQTFFGHEADVNSVCF--HPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHV 1936 (2004)
Q Consensus 1859 I~tl~~h~s~ItsIaf--SPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrI 1936 (2004)
.....+|...+..++| +|++..+++++.||+ ++|..+ .++++|++..+++. |+++++
T Consensus 258 ~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d------------------~~~~spd~~l~a~~--d~~v~l 316 (588)
T 2j04_A 258 SSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED------------------ELHVTADNIIAPYL--EKKFKK 316 (588)
T ss_dssp EEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS------------------SEEEECCCSSHHHH--HHHHHH
T ss_pred EEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec------------------cEEECCCceEEEEc--CCEEEE
Confidence 4444489999999999 999999999999999 999977 15689999887774 999999
Q ss_pred EECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEEC
Q psy8748 1937 WDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1937 WDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
|+...+. ...+.+ ...|.+++|+|||+.+|+++.
T Consensus 317 W~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 317 WSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred EECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 9975443 444443 667999999999999999874
No 107
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.4e-29 Score=319.29 Aligned_cols=290 Identities=13% Similarity=0.114 Sum_probs=216.0
Q ss_pred CEEEEEeCCCeEEEEECCCCceE----EEeeCCCCceEEEEEecC------CCEEEEeecCCeEEEEEcCCCCCCC----
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKT----QVIPLRSAWVMSVAFAQS------GNFVACGGMDNMCTVYDLNNRDSTG---- 1770 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l----~ti~~Ht~~ItsLafSPd------g~~LaSGS~DGtIrVWDl~t~~~~~---- 1770 (2004)
+.+++++.||+|+|||+.+++.. ..+..|.+.|.+++|+|+ +.+|++|+.||+|++||+..+....
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence 34444667899999999887642 346678889999999996 5799999999999999997653221
Q ss_pred -cceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEE--EECCCC-CEEEEEECCC
Q psy8748 1771 -AAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSI--SLSPDG-QYFVTGSVDK 1846 (2004)
Q Consensus 1771 -~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsL--afSPdg-~~LaSGS~DG 1846 (2004)
.......+.+|...+.++.|++++.+++|+.||+|++||++++........+|...|.++ +|++++ .+|++|+.||
T Consensus 254 ~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~ 333 (524)
T 2j04_B 254 MCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG 333 (524)
T ss_dssp CCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS
T ss_pred eecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC
Confidence 112234677899999999999888999999999999999998755445567899999999 568887 8999999999
Q ss_pred eEEEEECCCCeEEEEEecCCC--CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1847 SCKLWDFREKKCVQTFFGHEA--DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h~s--~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
+|++||+++++....+.+|.. .|.+++|+|++..+++++.|++|++||++++.+...+. +|...|.+++|+|+|++
T Consensus 334 tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~--gH~~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 334 YFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV--SRETTITAIGVSRLHPM 411 (524)
T ss_dssp EEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE--ECSSCEEEEECCSSCCB
T ss_pred eEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee--cCCCceEEEEeCCCCCe
Confidence 999999998877666666653 58899999999999999999999999999988877664 57789999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEcc-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEEeecCCCC
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVLSG-----HENRVTSISLSPNGMALVTSSWDQFVKVWQES-NTIVWKVLKVYNLEKK 1998 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL~g-----Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls-tg~l~k~Ik~~~~h~~ 1998 (2004)
|++|+.||+|++||+... ....... +...|.+++|+|++..+ ....+ +.+|... ++ ..+.....|.+
T Consensus 412 l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~~--~~~~~~~~~g---~~~~~l~gh~~ 484 (524)
T 2j04_B 412 VLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDSS--YEVYPLTVND---VSKAKIDAHGI 484 (524)
T ss_dssp CEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE-EECCC--CCCCC----------------CCC
T ss_pred EEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE-EccCC--ceecccccCC---cceeeecCCCc
Confidence 999999999999998653 2221111 12257899999999855 23222 3344332 23 23445567888
Q ss_pred ccccc
Q psy8748 1999 TIFCV 2003 (2004)
Q Consensus 1999 ~VtsV 2003 (2004)
.|++|
T Consensus 485 ~V~~V 489 (524)
T 2j04_B 485 NITCT 489 (524)
T ss_dssp SCCCE
T ss_pred eEEEE
Confidence 88776
No 108
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=4.2e-27 Score=285.75 Aligned_cols=252 Identities=17% Similarity=0.245 Sum_probs=212.9
Q ss_pred ccccccccceeEEEEeC-CCCEEEEEeCCCeEEEEECCCC-------ceEEEeeCCCCceEEEEEecCC-CEEEEeecCC
Q psy8748 1686 KSLKGHINKVNSVHYSG-DSRHCVSGSLDGKLIIWDTWTG-------NKTQVIPLRSAWVMSVAFAQSG-NFVACGGMDN 1756 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSP-DG~~LASGS~DGtIrVWDl~Tg-------k~l~ti~~Ht~~ItsLafSPdg-~~LaSGS~DG 1756 (2004)
..+.+|.+.|++++|+| ++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++ +++++|+.||
T Consensus 75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg 154 (402)
T 2aq5_A 75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154 (402)
T ss_dssp CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence 34678999999999999 9999999999999999999988 6678889999999999999998 6999999999
Q ss_pred eEEEEEcCCCCCCCcceEEEEE--ecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCC-eEEEEE
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIREL--LGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD-VVSISL 1832 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl--~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~-ItsLaf 1832 (2004)
.|++||+.++ .....+ .+|...+.++.|+++ ..+++++.||.|++||+++++.+..+...|.+. +.+++|
T Consensus 155 ~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 228 (402)
T 2aq5_A 155 VILVWDVGTG------AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF 228 (402)
T ss_dssp CEEEEETTTT------EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred EEEEEECCCC------CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE
Confidence 9999999754 455666 789999999999954 569999999999999999998886664667665 899999
Q ss_pred CCCCCEEEEE---ECCCeEEEEECCCCeE-EEEE-ecCCCCeEEEEEeCCCCEEEE-EECCCeEEEEEccCCce-eEEEc
Q psy8748 1833 SPDGQYFVTG---SVDKSCKLWDFREKKC-VQTF-FGHEADVNSVCFHPSGLAFAT-GSEDKTARLFDIRADQQ-IATYL 1905 (2004)
Q Consensus 1833 SPdg~~LaSG---S~DGsIrIWDlrs~k~-I~tl-~~h~s~ItsIafSPdg~~LaS-gS~DGtIrIWDLrtgk~-i~t~~ 1905 (2004)
+|+++++++| +.||.|++||+++++. +... ..+...+.+++|+|+++++++ |+.||.|++||+.+++. ...+.
T Consensus 229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp CSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred cCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 9999999999 6899999999987653 2222 257788999999999999875 44799999999998874 33333
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1906 PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1906 ~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
...+...+.+++|+|++.++++ .++.+++|++.++...
T Consensus 309 ~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 309 MFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred ccccCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 3335678999999999998875 5679999999876543
No 109
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=1.1e-26 Score=279.85 Aligned_cols=282 Identities=13% Similarity=0.148 Sum_probs=216.6
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEE-EEeecCCeEEEEE
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFV-ACGGMDNMCTVYD 1762 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~L-aSGS~DGtIrVWD 1762 (2004)
++..+.+|.+.|++++|+|||++|++|+.|| +++||..+++.......+ .+..+++.++++.+ ++|+.|+.|++||
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 3446688999999999999999999998775 789999887766554433 47788899888877 5678889999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCC-ceeEEeeccccCCeEEEEECCCCCEEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETG-QRIHEVAQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg-~~i~~il~~h~~~ItsLafSPdg~~LaS 1841 (2004)
..++ +....+. +...+.++.+.++..++ ..++.|++||+.++ +.+..+.. ....+++++ .++++
T Consensus 88 ~~~~------~~~~~~~-~~~~v~~v~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~ 152 (355)
T 3vu4_A 88 DVKK------QDVSRIK-VDAPVKDLFLSREFIVV--SYGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVY 152 (355)
T ss_dssp TTTT------EEEEEEE-CSSCEEEEEECSSEEEE--EETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEE
T ss_pred CCCC------cEEEEEE-CCCceEEEEEcCCEEEE--EEcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEE
Confidence 9764 3344443 56688899887654333 35789999999988 55433322 344556666 56666
Q ss_pred --EECCCeEEEEECCCCe----------------EEEEEecCCCCeEEEEEeCCCCEEEEEECCCe-EEEEEccCCceeE
Q psy8748 1842 --GSVDKSCKLWDFREKK----------------CVQTFFGHEADVNSVCFHPSGLAFATGSEDKT-ARLFDIRADQQIA 1902 (2004)
Q Consensus 1842 --GS~DGsIrIWDlrs~k----------------~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGt-IrIWDLrtgk~i~ 1902 (2004)
|+.||.|++||++++. .+..+.+|...|.+++|+|+|++|++|+.||+ |++||+++++.+.
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 5789999999999765 26788899999999999999999999999998 9999999999998
Q ss_pred EEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EEEc---------------------cCCCCeEEEE
Q psy8748 1903 TYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN--GVLS---------------------GHENRVTSIS 1959 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l--~tL~---------------------gHs~~VtsLa 1959 (2004)
.+....|...|.+++|+|+|++|++|+.||+|++||+..+... ..+. .+......++
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIA 312 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEE
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEE
Confidence 8853336789999999999999999999999999999765311 1111 1122347799
Q ss_pred EcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1960 LSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1960 FSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
|+++++++++++.||.+++|++..
T Consensus 313 ~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 313 WISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp ESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEEEEc
Confidence 999999999999999999999764
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=1e-25 Score=271.28 Aligned_cols=234 Identities=17% Similarity=0.209 Sum_probs=181.4
Q ss_pred ceeEEEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCC-CCCCc
Q psy8748 1694 KVNSVHYSGDSRHC-VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR-DSTGA 1771 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~L-ASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~-~~~~~ 1771 (2004)
.+..+++.++++++ ++|+.|++|++||..+++.+..+. +...|.++.|+++. ++++ .++.|++||+.+. +....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITD 135 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSC
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEE
Confidence 46678888888877 567788999999999999998887 56689999998654 4443 4789999999875 32222
Q ss_pred ceEEEEEecCccceeeeEEeCCCcEEE--eecCCeEEEEECCCCce---------------eEEeeccccCCeEEEEECC
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTTLLT--GSGDMKIVTWNLETGQR---------------IHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~LlS--gS~DGtI~IWDl~tg~~---------------i~~il~~h~~~ItsLafSP 1834 (2004)
... ....+++.. ..+++ |+.+|.|++||+.++.. ....+.+|.+.|.+++|+|
T Consensus 136 ~~~---------~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~ 205 (355)
T 3vu4_A 136 DIR---------FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR 205 (355)
T ss_dssp CEE---------EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT
T ss_pred ecc---------CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC
Confidence 211 222334444 45554 68899999999998651 0245678999999999999
Q ss_pred CCCEEEEEECCCe-EEEEECCCCeEEEEEe-c-CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeE--E------
Q psy8748 1835 DGQYFVTGSVDKS-CKLWDFREKKCVQTFF-G-HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIA--T------ 1903 (2004)
Q Consensus 1835 dg~~LaSGS~DGs-IrIWDlrs~k~I~tl~-~-h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~--t------ 1903 (2004)
+|++|++|+.||+ |++||+++++.+..+. + |...|.+++|+|++++|++++.||+|++||++.+.... .
T Consensus 206 ~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 206 KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 9999999999998 9999999999999998 5 99999999999999999999999999999997653211 1
Q ss_pred ------------E-cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1904 ------------Y-LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1904 ------------~-~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
+ ...........++|+++|+++++++.||.+++|++..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 0 0111122346789999999999999999999999743
No 111
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=1.2e-25 Score=277.16 Aligned_cols=255 Identities=22% Similarity=0.343 Sum_probs=215.7
Q ss_pred EEeeCCCCceEEEEEecC-CCEEEEeecCCeEEEEEcCCCCCC----CcceEEEEEecCccceeeeEEeCCC--cEEEee
Q psy8748 1728 QVIPLRSAWVMSVAFAQS-GNFVACGGMDNMCTVYDLNNRDST----GAAKVIRELLGYEGFLSSCRFIDDT--TLLTGS 1800 (2004)
Q Consensus 1728 ~ti~~Ht~~ItsLafSPd-g~~LaSGS~DGtIrVWDl~t~~~~----~~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS 1800 (2004)
.....|.+.|++++|+|+ +.++++++.+|.|++|++...... ........+.+|...+.++.|++.+ .+++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344568999999999997 789999999999999999752111 1245566778899999999999654 689999
Q ss_pred cCCeEEEEECCCCcee------EEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeE
Q psy8748 1801 GDMKIVTWNLETGQRI------HEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREK---KCVQTFFGHEADVN 1870 (2004)
Q Consensus 1801 ~DGtI~IWDl~tg~~i------~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~---k~I~tl~~h~s~It 1870 (2004)
.||.|++||+..+... .....+|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 9999999999874321 233568899999999999 7789999999999999999977 56777889999999
Q ss_pred EEEEeCCCC-EEEEEECCCeEEEEEccC-CceeEEEcCCCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC------
Q psy8748 1871 SVCFHPSGL-AFATGSEDKTARLFDIRA-DQQIATYLPPNKNSGFTSCAVSSSGR-YIFCGSDDNNVHVWDLLK------ 1941 (2004)
Q Consensus 1871 sIafSPdg~-~LaSgS~DGtIrIWDLrt-gk~i~t~~~~~~~s~ItsLafSPdG~-~LaSGSsDGsIrIWDL~t------ 1941 (2004)
+++|+|++. ++++|+.||.|++||+++ ...+..+. .|...|.+++|+|+++ ++++|+.||.|++||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~--~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE--CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee--cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 999999887 688999999999999998 44555553 4567899999999985 799999999999999976
Q ss_pred --------CeeeEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC
Q psy8748 1942 --------TTHNGVLSGHENRVTSISLSPNGM-ALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1942 --------ge~l~tL~gHs~~VtsLaFSPDg~-~LaSgS~DGtIrIWdlstg 1984 (2004)
.+.+..+.+|...|++++|+|++. ++++++.||.|++|++.++
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 366777889999999999999999 9999999999999999754
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-26 Score=277.14 Aligned_cols=277 Identities=16% Similarity=0.108 Sum_probs=220.4
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC---CCCcceEE
Q psy8748 1699 HYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD---STGAAKVI 1775 (2004)
Q Consensus 1699 aFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~---~~~~~k~i 1775 (2004)
.+.+++.++++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|+.|++|+..... ........
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344678899999999999999999999888776 466888889888 9999999999999876421 00112222
Q ss_pred EE-EecCccceeeeEEeC--C-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy8748 1776 RE-LLGYEGFLSSCRFID--D-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1776 ~s-l~gh~~~Vssvafsd--d-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIW 1851 (2004)
.. ..+|...+.++.|++ + ..+++++.||.|++||+++++........+...+.+++|+|++.++++|+.||.|++|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 22 336678899999987 4 4688899999999999999988654445566689999999999999999999999999
Q ss_pred ECCCCeEE-EEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC-CCCCCe--EEEEEcCCCCEEE
Q psy8748 1852 DFREKKCV-QTFFG-HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP-NKNSGF--TSCAVSSSGRYIF 1926 (2004)
Q Consensus 1852 Dlrs~k~I-~tl~~-h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~-~~~s~I--tsLafSPdG~~La 1926 (2004)
|+++++.+ ..+.. |..+|.+++|+|++.++++++ |+.|++||+++++....+... .+...+ .+++|+|+|++|+
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 99999877 77887 999999999999999999999 559999999988765444220 111222 4799999999999
Q ss_pred EEeC-CCeEEEEECCCCeeeEEEccCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCe
Q psy8748 1927 CGSD-DNNVHVWDLLKTTHNGVLSGHENRVTSISLSP---NGMALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1927 SGSs-DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSP---Dg~~LaSgS~DGtIrIWdlstg~ 1985 (2004)
+|+. |+.|++|++.+....... .++..++|.+ ++..+++++.||.+.++-..+..
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~ 335 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDS 335 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECSSE
T ss_pred EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecCCe
Confidence 9998 999999999765544333 5678888988 88999999999999998766553
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=2.6e-25 Score=270.64 Aligned_cols=284 Identities=15% Similarity=0.183 Sum_probs=237.5
Q ss_pred ccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE-----eeCCCCceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQV-----IPLRSAWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~t-----i~~Ht~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
..+..| ..+.+++|+|++.++++++.|+.|++||+.+++.... +.+|...|.+++|++++.++++++.||.|++
T Consensus 117 ~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~ 195 (433)
T 3bws_A 117 SRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHV 195 (433)
T ss_dssp EEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEE
T ss_pred EEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEE
Confidence 334444 4566999999777888888899999999999988873 4578889999999999999999999999999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cE-EEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCE
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TL-LTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQY 1838 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~L-lSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~ 1838 (2004)
||++++ +....+..+...+.+++|.+++ .+ ++++.++.|++||+.+++....+ .....+.+++|+|++++
T Consensus 196 ~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~ 267 (433)
T 3bws_A 196 FDLKTL------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT--DKIGLPRGLLLSKDGKE 267 (433)
T ss_dssp EETTTC------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC--CCCSEEEEEEECTTSSE
T ss_pred EECCCc------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe--cCCCCceEEEEcCCCCE
Confidence 999754 4455666788899999999765 45 44557999999999998876544 23456999999999999
Q ss_pred EEEEE--------CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEE-EEEECCCeEEEEEccCCceeEEEcCCCC
Q psy8748 1839 FVTGS--------VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAF-ATGSEDKTARLFDIRADQQIATYLPPNK 1909 (2004)
Q Consensus 1839 LaSGS--------~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~L-aSgS~DGtIrIWDLrtgk~i~t~~~~~~ 1909 (2004)
+++++ .||.|++||+++++.+..+ .+...+.+++|+|+++.+ ++++.|+.|++||+.+++....+. +
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~ 343 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP---V 343 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE---C
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec---C
Confidence 99988 4889999999998876665 556688999999999755 566889999999999988877763 3
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---------------CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEEC-C
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGSD---------------DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW-D 1973 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGSs---------------DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~-D 1973 (2004)
...+.+++|+|+|+++++++. ||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. |
T Consensus 344 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d 422 (433)
T 3bws_A 344 FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLD 422 (433)
T ss_dssp SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTT
T ss_pred CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCC
Confidence 467899999999999998876 57999999999999988876 457999999999999998875 9
Q ss_pred CeEEEEECCC
Q psy8748 1974 QFVKVWQESN 1983 (2004)
Q Consensus 1974 GtIrIWdlst 1983 (2004)
|.|++|++++
T Consensus 423 ~~i~v~~~~~ 432 (433)
T 3bws_A 423 HQIRVYRRDG 432 (433)
T ss_dssp TEEEEEEETT
T ss_pred CeEEEEEecC
Confidence 9999999874
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.6e-27 Score=311.18 Aligned_cols=253 Identities=19% Similarity=0.264 Sum_probs=214.9
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..+|++.|++++|+|+|++||+ |+.||+|+|||+.. ..
T Consensus 5 l~gH~~~V~~l~~s~dg~~lat-g~~dg~I~vwd~~~-------------~~---------------------------- 42 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLAT-CSSDKTIKIFEVEG-------------ET---------------------------- 42 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEE-EETTTEEEEEEEET-------------TE----------------------------
T ss_pred cccCcceeEEEEECCCCCeEEE-EECCCcEEEEecCC-------------CC----------------------------
Confidence 4569999999999999999999 99999999999864 00
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCC--CCEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGD--SRHCV 1708 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPD--G~~LA 1708 (2004)
......+.+|.+.|++++|+++ +++|+
T Consensus 43 ---------------------------------------------------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~ 71 (753)
T 3jro_A 43 ---------------------------------------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILA 71 (753)
T ss_dssp ---------------------------------------------------EEEEEEECCCSSCEEEEEECCTTSCSEEE
T ss_pred ---------------------------------------------------CccceeccCCcCceEEEEecCCCCCCEEE
Confidence 0123456679999999999988 99999
Q ss_pred EEeCCCeEEEEECCCCc--eEEEeeCCCCceEEEEEecC--CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1709 SGSLDGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQS--GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1709 SGS~DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPd--g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
+|+.||.|++||+.+++ ....+..|...|.+++|+|+ ++.+++|+.||.|++||+..+.. .......+|...
T Consensus 72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~----~~~~~~~~~~~~ 147 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIG 147 (753)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC----CCCEEEECCSSC
T ss_pred EEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC----cceeEeecCCCc
Confidence 99999999999999987 67778889999999999999 99999999999999999986532 233456788999
Q ss_pred eeeeEEeC--------------CCcEEEeecCCeEEEEECCCCce---eEEeeccccCCeEEEEECCC---CCEEEEEEC
Q psy8748 1785 LSSCRFID--------------DTTLLTGSGDMKIVTWNLETGQR---IHEVAQAHIGDVVSISLSPD---GQYFVTGSV 1844 (2004)
Q Consensus 1785 Vssvafsd--------------d~~LlSgS~DGtI~IWDl~tg~~---i~~il~~h~~~ItsLafSPd---g~~LaSGS~ 1844 (2004)
+.++.|.+ +..+++|+.||.|++||++++.. ......+|.+.|++++|+|+ ++++++|+.
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 99999987 56799999999999999988752 23445789999999999999 899999999
Q ss_pred CCeEEEEECCCCe-----EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce
Q psy8748 1845 DKSCKLWDFREKK-----CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ 1900 (2004)
Q Consensus 1845 DGsIrIWDlrs~k-----~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~ 1900 (2004)
||.|++||++++. .......|...|.+++|+|+|+++++|+.||.|++||+..+..
T Consensus 228 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 9999999998764 2333345888999999999999999999999999999986543
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.8e-26 Score=303.73 Aligned_cols=253 Identities=20% Similarity=0.224 Sum_probs=216.4
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECC--CCceEEEeeCCCCceEEEEEecC--CCEEEEeecCCeEEE
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTW--TGNKTQVIPLRSAWVMSVAFAQS--GNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~--Tgk~l~ti~~Ht~~ItsLafSPd--g~~LaSGS~DGtIrV 1760 (2004)
...+.||.+.|++++|+|+|+++++|+.||.|+|||+. +++....+.+|.+.|.+++|+++ ++++++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35688999999999999999999999999999999988 55777888999999999999988 999999999999999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeC---CCcEEEeecCCeEEEEECCCCcee-EEeeccccCCeEEEEECC--
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFID---DTTLLTGSGDMKIVTWNLETGQRI-HEVAQAHIGDVVSISLSP-- 1834 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd---d~~LlSgS~DGtI~IWDl~tg~~i-~~il~~h~~~ItsLafSP-- 1834 (2004)
||+.++ .........+|...+.++.|++ +..+++|+.||.|++||+.++... .....+|...|.+++|+|
T Consensus 82 wd~~~~----~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 82 WKEENG----RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEETT----EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred EECCCC----cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence 999864 2346677888999999999996 467999999999999999887432 234568899999999999
Q ss_pred -----------CCCEEEEEECCCeEEEEECCCC----eEEEEEecCCCCeEEEEEeCC---CCEEEEEECCCeEEEEEcc
Q psy8748 1835 -----------DGQYFVTGSVDKSCKLWDFREK----KCVQTFFGHEADVNSVCFHPS---GLAFATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1835 -----------dg~~LaSGS~DGsIrIWDlrs~----k~I~tl~~h~s~ItsIafSPd---g~~LaSgS~DGtIrIWDLr 1896 (2004)
+++++++|+.||.|++||++++ .....+.+|...|.+++|+|+ ++++++|+.||.|++||++
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 5899999999999999999876 566778899999999999999 8999999999999999998
Q ss_pred CCcee---EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1897 ADQQI---ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1897 tgk~i---~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
++... .......+...+++++|+|+|+++++|+.||.|++||+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 86422 1222344667899999999999999999999999999874
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=2.8e-24 Score=258.03 Aligned_cols=272 Identities=17% Similarity=0.198 Sum_probs=225.9
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEE-EEeecCCeEEEEEcCCCCCCCcceEEEEEecCcc
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFV-ACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG 1783 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~L-aSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~ 1783 (2004)
..+++++.|+.|++||+.+++....+..|.. +.+++|+|+++++ ++++.|+.|++||+.++ +....+..+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~------~~~~~~~~~~- 74 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATN------NVIATVPAGS- 74 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTT------EEEEEEECSS-
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCC------eEEEEEECCC-
Confidence 4678889999999999999999998887755 8999999999976 67778999999999754 3444444444
Q ss_pred ceeeeEEeCCCc-EE-EeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEE-EEEECCCeEEEEECCCCeEEE
Q psy8748 1784 FLSSCRFIDDTT-LL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYF-VTGSVDKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1784 ~Vssvafsdd~~-Ll-SgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~L-aSGS~DGsIrIWDlrs~k~I~ 1860 (2004)
.+.+++|++++. ++ +++.++.|++||+.+++..... .+...+.+++|+|+++.+ ++++.|+.|++||+.+++.+.
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE--eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 888999986654 54 4556799999999999877554 344578999999999977 677789999999999999888
Q ss_pred EEecCCCCeEEEEEeCCCCEE-EEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe---CCCeEEE
Q psy8748 1861 TFFGHEADVNSVCFHPSGLAF-ATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS---DDNNVHV 1936 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg~~L-aSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS---sDGsIrI 1936 (2004)
.+..+ ..+.+++|+|+++++ ++++.+|.|++||+++++....+. +...+.+++|+|+|+++++++ .++.|++
T Consensus 153 ~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~ 228 (391)
T 1l0q_A 153 TVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228 (391)
T ss_dssp EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred EEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEecCcCCCcEEE
Confidence 87665 557999999999887 567788999999999998877764 235689999999999999888 6899999
Q ss_pred EECCCCeeeEEEccCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1937 WDLLKTTHNGVLSGHENRVTSISLSPNGMAL-VTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1937 WDL~tge~l~tL~gHs~~VtsLaFSPDg~~L-aSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
||+.+++.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++....+.
T Consensus 229 ~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp EETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 9999999988888765 58999999999987 677889999999999987655554
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=4.6e-24 Score=256.08 Aligned_cols=279 Identities=20% Similarity=0.160 Sum_probs=221.5
Q ss_pred cceeEEEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEE-eecCCeEEEEEcCCCCCCC
Q psy8748 1693 NKVNSVHYSGDSRHC-VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVAC-GGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~L-ASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaS-GS~DGtIrVWDl~t~~~~~ 1770 (2004)
..+.+++|+|+|+++ ++++.|+.|++||+.+++....+..+. .+.+++|+|+++++++ ++.++.|++||+.++
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~---- 106 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN---- 106 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT----
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC----
Confidence 347899999999987 677789999999999999998888666 8999999999998755 456799999999764
Q ss_pred cceEEEEEecCccceeeeEEeCCCc-E-EEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEE-EEEECCCe
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDTT-L-LTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYF-VTGSVDKS 1847 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~~-L-lSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~L-aSGS~DGs 1847 (2004)
+....+.. ...+.++.|++++. + ++++.++.|++||+.+++....+. ....+.+++|+|+++++ ++++.+|.
T Consensus 107 --~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~ 181 (391)
T 1l0q_A 107 --TVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--VGRSPKGIAVTPDGTKVYVANFDSMS 181 (391)
T ss_dssp --EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTE
T ss_pred --eEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe--cCCCcceEEECCCCCEEEEEeCCCCE
Confidence 33333433 44678889986654 5 677889999999999988775542 23567999999999987 56678899
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE---CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS---EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1848 IrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS---~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
|++||+++++.+..+. +...+.+++|+|+++++++++ .++.|++||+.+++.+..+... ..+.+++|+|+|++
T Consensus 182 v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~ 257 (391)
T 1l0q_A 182 ISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVTPDGKK 257 (391)
T ss_dssp EEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC---SSEEEEEECTTSSE
T ss_pred EEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC---CCccEEEEccCCCE
Confidence 9999999998877764 566889999999999999888 6899999999999887777432 35789999999998
Q ss_pred E-EEEeCCCeEEEEECCCCeeeEEEccCCCCeE---EEE------------EcCCC----------CEEEEEECCCeEEE
Q psy8748 1925 I-FCGSDDNNVHVWDLLKTTHNGVLSGHENRVT---SIS------------LSPNG----------MALVTSSWDQFVKV 1978 (2004)
Q Consensus 1925 L-aSGSsDGsIrIWDL~tge~l~tL~gHs~~Vt---sLa------------FSPDg----------~~LaSgS~DGtIrI 1978 (2004)
+ ++++.|+.|++||+.+++....+..|..+.. .+. |+.+. ..+...+.|..+++
T Consensus 258 l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (391)
T 1l0q_A 258 VYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWK 337 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEE
T ss_pred EEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEE
Confidence 8 5667899999999999999988876654421 112 22211 34566677899999
Q ss_pred EECCCCe
Q psy8748 1979 WQESNTI 1985 (2004)
Q Consensus 1979 Wdlstg~ 1985 (2004)
|++.++.
T Consensus 338 W~~~~g~ 344 (391)
T 1l0q_A 338 WDFGDGS 344 (391)
T ss_dssp EECSSSC
T ss_pred EECCCCc
Confidence 9998775
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.6e-25 Score=270.40 Aligned_cols=308 Identities=9% Similarity=0.063 Sum_probs=222.5
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc---eEEEeeCCCCceEEEEEe---cCCCEEEEeecCCeE-EEEEcC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN---KTQVIPLRSAWVMSVAFA---QSGNFVACGGMDNMC-TVYDLN 1764 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk---~l~ti~~Ht~~ItsLafS---Pdg~~LaSGS~DGtI-rVWDl~ 1764 (2004)
..++.+++|+++|++|+++ .++.|++||+.+|+ .+..+..+........+. .++..+.....++.- +...-.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3588999999999976666 57899999999999 777776654422222221 112222221111100 000000
Q ss_pred C--CCCCCcceEEEEEecCccceeeeEEeCCCc-E-EEeecCCeEEEEECC--CCceeEEee-ccccCCeEEEEECCCCC
Q psy8748 1765 N--RDSTGAAKVIRELLGYEGFLSSCRFIDDTT-L-LTGSGDMKIVTWNLE--TGQRIHEVA-QAHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1765 t--~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-L-lSgS~DGtI~IWDl~--tg~~i~~il-~~h~~~ItsLafSPdg~ 1837 (2004)
. ..............++.+.|.+++|++++. + ++++.||.|++||+. +++....+. ..+...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 0 000001112234457788999999997654 3 678899999999999 777665443 25678899999999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEE----EEecCCCCeEEEEEeCC---CCEEEEEECCCeEEEEEccCCceeEEEcCCCCC
Q psy8748 1838 YFVTGSVDKSCKLWDFREKKCVQ----TFFGHEADVNSVCFHPS---GLAFATGSEDKTARLFDIRADQQIATYLPPNKN 1910 (2004)
Q Consensus 1838 ~LaSGS~DGsIrIWDlrs~k~I~----tl~~h~s~ItsIafSPd---g~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~ 1910 (2004)
+|++|+.||.|++|++.++.... .+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++.+..+. ..|.
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~h~ 241 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL-FGHK 241 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC-CCCS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee-cCCC
Confidence 99999999999999998776443 67789999999999999 9999999999999999999998877753 3566
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc-------------------------CCCCeEEEEEcCCCC
Q psy8748 1911 SGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG-------------------------HENRVTSISLSPNGM 1965 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g-------------------------Hs~~VtsLaFSPDg~ 1965 (2004)
..|.+++|+ +|++|++|+.||.|++||+.+++++..+.. +...|.+++|+|+++
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 889999999 999999999999999999999998888753 345799999999999
Q ss_pred EEEEEE-CCCeEEEEEC--CCCeEEEEEEeecCCCCccccc
Q psy8748 1966 ALVTSS-WDQFVKVWQE--SNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1966 ~LaSgS-~DGtIrIWdl--stg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
+|++++ .|+.|++|++ .++..++.++.+..+ +.|.++
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~ 360 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISL 360 (450)
T ss_dssp EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEE
T ss_pred EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEE
Confidence 999999 8999999999 665445666666666 556554
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=2.7e-25 Score=273.91 Aligned_cols=256 Identities=16% Similarity=0.298 Sum_probs=215.7
Q ss_pred ccccccccceeEEEEeCC-CCEEEEEeCCCeEEEEECCC----------CceEEEeeCCCCceEEEEEecCCC-EEEEee
Q psy8748 1686 KSLKGHINKVNSVHYSGD-SRHCVSGSLDGKLIIWDTWT----------GNKTQVIPLRSAWVMSVAFAQSGN-FVACGG 1753 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPD-G~~LASGS~DGtIrVWDl~T----------gk~l~ti~~Ht~~ItsLafSPdg~-~LaSGS 1753 (2004)
....+|.+.|++++|+|+ +.++++|+.||.|++||+.+ ......+.+|...|.+++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 456689999999999997 67999999999999999986 677888899999999999999988 999999
Q ss_pred cCCeEEEEEcCCCCCC-CcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCCCc--eeEEeeccccCCeE
Q psy8748 1754 MDNMCTVYDLNNRDST-GAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQ--RIHEVAQAHIGDVV 1828 (2004)
Q Consensus 1754 ~DGtIrVWDl~t~~~~-~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~--~i~~il~~h~~~It 1828 (2004)
.||.|++|++...... ........+.+|...+.++.|++ +..+++++.||.|++||++++. ........|...|.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 9999999999864321 11222456678999999999986 4468889999999999999873 22233468899999
Q ss_pred EEEECCCCC-EEEEEECCCeEEEEECCC-CeEEEEEecCCCCeEEEEEeCCCC-EEEEEECCCeEEEEEccCCce-----
Q psy8748 1829 SISLSPDGQ-YFVTGSVDKSCKLWDFRE-KKCVQTFFGHEADVNSVCFHPSGL-AFATGSEDKTARLFDIRADQQ----- 1900 (2004)
Q Consensus 1829 sLafSPdg~-~LaSGS~DGsIrIWDlrs-~k~I~tl~~h~s~ItsIafSPdg~-~LaSgS~DGtIrIWDLrtgk~----- 1900 (2004)
+++|+|++. ++++|+.||.|++||++. ...+..+..|...|.+++|+|++. ++++++.||.|++||+.....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999887 788999999999999997 567888889999999999999985 699999999999999987221
Q ss_pred -------eEEEcCCCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q psy8748 1901 -------IATYLPPNKNSGFTSCAVSSSGR-YIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1901 -------i~t~~~~~~~s~ItsLafSPdG~-~LaSGSsDGsIrIWDL~t 1941 (2004)
...+....|...|.+++|+|+++ ++++++.||.|++|++..
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 22233356677899999999999 899999999999999864
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=5.8e-24 Score=258.80 Aligned_cols=241 Identities=15% Similarity=0.194 Sum_probs=202.4
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEE-EeecCCeEEEEEcCCC
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVA-CGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~La-SGS~DGtIrVWDl~t~ 1766 (2004)
+.+|.+.|++++|+++++++++++.||.|++||+.+++....+..|...+.+++|+|+++.++ +++.+|.|++||+.++
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 346889999999999999999999999999999999999999999999999999999999885 4557999999999754
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCC-cEEEee--------cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGS--------GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS--------~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~ 1837 (2004)
+....+.. ...+.++.|.+++ .+++++ .||.|++||+.+++..... .+...+.+++|+|+++
T Consensus 245 ------~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 245 ------LEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--GPPGNKRHIVSGNTEN 315 (433)
T ss_dssp ------EEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--EEEECEEEEEECSSTT
T ss_pred ------cEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--cCCCCcceEEECCCCC
Confidence 33333333 4458888998665 566766 4889999999998776544 4566889999999997
Q ss_pred EE-EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---------------CCeEEEEEccCCcee
Q psy8748 1838 YF-VTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE---------------DKTARLFDIRADQQI 1901 (2004)
Q Consensus 1838 ~L-aSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~---------------DGtIrIWDLrtgk~i 1901 (2004)
.+ ++++.|+.|++||+.+++.+..+. +...+.+++|+|+|+++++++. ||.|++||..+++..
T Consensus 316 ~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 316 KIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 55 556889999999999998887774 6788999999999999988886 579999999999888
Q ss_pred EEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q psy8748 1902 ATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLK 1941 (2004)
Q Consensus 1902 ~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~t 1941 (2004)
..+.. ...+.+++|+|+|+++++++. ||.|++|++..
T Consensus 395 ~~~~~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 395 EFWEA---GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEC---SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEecC---CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 87743 356899999999999998875 99999999853
No 121
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.9e-25 Score=282.92 Aligned_cols=262 Identities=11% Similarity=0.086 Sum_probs=214.2
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~ 1769 (2004)
.-..+|.+++|+|||+++|+++.|++|+ |...++.+ .+|...|.+++|+|+| .++.+.+|+.+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence 3457999999999999999999999999 76666544 7999999999999999 45555555543211
Q ss_pred CcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccC-----CeEEEEECCCCCEEEEEE
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIG-----DVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~-----~ItsLafSPdg~~LaSGS 1843 (2004)
.... .+...|.+++|++++ .+++++.||.|++||... .+ .... |.. .+.+++|+|||++|++|+
T Consensus 79 -----~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l-~~l~-~~~~~~~~sv~svafSPDG~~LAsgs 148 (588)
T 2j04_A 79 -----LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--ML-TNLD-SKGNLSSRTYHCFEWNPIESSIVVGN 148 (588)
T ss_dssp -----SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EE-EECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred -----Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--ee-eecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence 1111 347889999999665 499999999999999544 33 3334 554 599999999999999999
Q ss_pred CCCeEEEEECCCCe-------EEEEE----ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCcee---EEEcCCCC
Q psy8748 1844 VDKSCKLWDFREKK-------CVQTF----FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQI---ATYLPPNK 1909 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~k-------~I~tl----~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i---~t~~~~~~ 1909 (2004)
.||+|++||+.++. .+.++ .+|...|.+++|+|+| +++++.|+.|++||+.++... .++. ..|
T Consensus 149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h 225 (588)
T 2j04_A 149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-NAS 225 (588)
T ss_dssp TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE-CCC
T ss_pred CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec-ccc
Confidence 99999999999875 35666 5677899999999999 888899999999999887742 3332 245
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEE--cCCCCEEEEEECCCeEEEEECC
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISL--SPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaF--SPDg~~LaSgS~DGtIrIWdls 1982 (2004)
...|.+++|+ |+++++++ +|+|++||+.+++......+|.+.|.+++| +|++..+++++.||+ ++|..+
T Consensus 226 ~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 226 RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 5789999999 68999887 699999999988875555489999999999 999999999999999 999987
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=5.3e-25 Score=268.72 Aligned_cols=261 Identities=11% Similarity=0.049 Sum_probs=184.8
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE-----EeeCCCCceEEEEEec--------CCCEEEEeecC
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQ-----VIPLRSAWVMSVAFAQ--------SGNFVACGGMD 1755 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~-----ti~~Ht~~ItsLafSP--------dg~~LaSGS~D 1755 (2004)
.+|...+....+++++.++++|+.|++|++||..++.... .+.+|.+.|.+++|+| ++++|++|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 3466666677777889999999999999999998886543 2468999999999998 78999999999
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEe--------------
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEV-------------- 1819 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~i-------------- 1819 (2004)
++|++||+.++ .......+|...+.+++|++++ .+++++.||.|++||+.+++.....
T Consensus 166 ~tv~~Wd~~~~------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~ 239 (393)
T 4gq1_A 166 CTLIIWRLTDE------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL 239 (393)
T ss_dssp SEEEEEEEETT------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE
T ss_pred CeEEEEECCCC------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec
Confidence 99999999753 4556677888999999999754 5899999999999999887643221
Q ss_pred ----------eccccCCeEEEEEC-CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC
Q psy8748 1820 ----------AQAHIGDVVSISLS-PDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK 1888 (2004)
Q Consensus 1820 ----------l~~h~~~ItsLafS-Pdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG 1888 (2004)
..+|...+.++.|+ ++++.+++++.|+.+++||+..+.....+..|...+..+.+.|+...+...
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---- 315 (393)
T 4gq1_A 240 NTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF---- 315 (393)
T ss_dssp ESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS----
T ss_pred ccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc----
Confidence 23567778899886 799999999999999999999888777777777777777777664322110
Q ss_pred eEEEEEccCCceeEEEcCCCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCE
Q psy8748 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSS--SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMA 1966 (2004)
Q Consensus 1889 tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP--dG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~ 1966 (2004)
...+. ..+++ ++.++++|+.||.|++||+.+++......+|..+|.+++|+|||++
T Consensus 316 ---------------------~~~~~-~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~ 373 (393)
T 4gq1_A 316 ---------------------PSLLG-ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSH 373 (393)
T ss_dssp ---------------------CCSSC-CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSE
T ss_pred ---------------------Cccee-EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCE
Confidence 01112 23333 4556778889999999999999999888899999999999999999
Q ss_pred EEEEECCCeEEEEECC
Q psy8748 1967 LVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1967 LaSgS~DGtIrIWdls 1982 (2004)
||+++.|| +.+|++.
T Consensus 374 LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 374 LAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEEESSE-EEEEEEG
T ss_pred EEEEeCCC-eEEEEEe
Confidence 99999766 6677654
No 123
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=4.9e-23 Score=263.58 Aligned_cols=287 Identities=14% Similarity=0.122 Sum_probs=226.6
Q ss_pred eeEEEEeCCCCEEEEEeCCCeEEEEEC--CCCceEEEeeCCCCceEEEEEec----CCCEEEEeec-CCeEEEEEcCCCC
Q psy8748 1695 VNSVHYSGDSRHCVSGSLDGKLIIWDT--WTGNKTQVIPLRSAWVMSVAFAQ----SGNFVACGGM-DNMCTVYDLNNRD 1767 (2004)
Q Consensus 1695 VtsLaFSPDG~~LASGS~DGtIrVWDl--~Tgk~l~ti~~Ht~~ItsLafSP----dg~~LaSGS~-DGtIrVWDl~t~~ 1767 (2004)
+.+++|+|||+++++++.|++|++||+ .+++.+..+.. ...+..++|+| +|+++++++. ++.|.+||..+.+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 779999999999999999999999999 88988888884 55689999999 9999998884 8999999987643
Q ss_pred CCCcceEEEEEec----------C-ccceeeeEEeCC-C-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1768 STGAAKVIRELLG----------Y-EGFLSSCRFIDD-T-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1768 ~~~~~k~i~sl~g----------h-~~~Vssvafsdd-~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
....+.. | ...+..+.++++ . .+++...+|.|.+||..+++.+......+...+.++.|+|
T Consensus 260 ------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp 333 (543)
T 1nir_A 260 ------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS 333 (543)
T ss_dssp ------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT
T ss_pred ------cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECC
Confidence 3333322 1 225777888753 3 3566778899999999887654322224566788999999
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCeEEEEEec----CCCCeEEEEEeCC-CCEEEEEE-CCCeEEEEEccC-------Cce
Q psy8748 1835 DGQYFVTGS-VDKSCKLWDFREKKCVQTFFG----HEADVNSVCFHPS-GLAFATGS-EDKTARLFDIRA-------DQQ 1900 (2004)
Q Consensus 1835 dg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~----h~s~ItsIafSPd-g~~LaSgS-~DGtIrIWDLrt-------gk~ 1900 (2004)
+|+++++++ .+++|.+||..+++.+..+.. |.+....+ ++|+ +..++++. .|++|.+||+.+ ++.
T Consensus 334 dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~ 412 (543)
T 1nir_A 334 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK 412 (543)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE
Confidence 999887665 588999999999998888764 44434333 4777 55566664 579999999998 788
Q ss_pred eEEEcCCCCCCCeEEEEEcCCCCEEEEEe-------CCCeEEEEECCCCeee-EEE--------ccCCCCeEEEEEcCCC
Q psy8748 1901 IATYLPPNKNSGFTSCAVSSSGRYIFCGS-------DDNNVHVWDLLKTTHN-GVL--------SGHENRVTSISLSPNG 1964 (2004)
Q Consensus 1901 i~t~~~~~~~s~ItsLafSPdG~~LaSGS-------sDGsIrIWDL~tge~l-~tL--------~gHs~~VtsLaFSPDg 1964 (2004)
+.++.. +...+..++++|+|++|++++ .+++|.+||+.+++.. ..+ ..+...+..++|+|+|
T Consensus 413 v~~l~~--~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g 490 (543)
T 1nir_A 413 VAELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 490 (543)
T ss_dssp EEEEEC--SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred EEEEEc--CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence 888854 335678899999999999987 2679999999998877 443 3567889999999999
Q ss_pred CEEEEEE-----CCCeEEEEECCCCeEEEEEE
Q psy8748 1965 MALVTSS-----WDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1965 ~~LaSgS-----~DGtIrIWdlstg~l~k~Ik 1991 (2004)
+.++++. .|+.|.|||..++++.+.++
T Consensus 491 ~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 491 DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 9988763 37999999999998877776
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.2e-24 Score=257.00 Aligned_cols=237 Identities=11% Similarity=0.174 Sum_probs=189.6
Q ss_pred EEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECC---------
Q psy8748 1741 AFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLE--------- 1811 (2004)
Q Consensus 1741 afSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~--------- 1811 (2004)
.+.+++..+++|+.||.|++||+.+++. ...+. ...+.++.+.+. +++++.|+.|++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~------~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~ 112 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKT------ITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSK 112 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSC------EEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETT
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcE------EEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecC
Confidence 3445788999999999999999987542 22222 345666667666 9999999999999665
Q ss_pred CCceeEEeeccccCCeEEEEECC--CCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEEECCC
Q psy8748 1812 TGQRIHEVAQAHIGDVVSISLSP--DGQYFVTGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVCFHPSGLAFATGSEDK 1888 (2004)
Q Consensus 1812 tg~~i~~il~~h~~~ItsLafSP--dg~~LaSGS~DGsIrIWDlrs~k~I~tl~-~h~s~ItsIafSPdg~~LaSgS~DG 1888 (2004)
+++.+.....+|.+.|.+++|+| +++++++|+.||.|++||+++++.+.... .+...+.+++|+|++.++++|+.||
T Consensus 113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg 192 (343)
T 3lrv_A 113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG 192 (343)
T ss_dssp TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence 55555555557778999999999 99999999999999999999998876664 4456899999999999999999999
Q ss_pred eEEEEEccCCcee-EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc---CCCCeE--EEEEcC
Q psy8748 1889 TARLFDIRADQQI-ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG---HENRVT--SISLSP 1962 (2004)
Q Consensus 1889 tIrIWDLrtgk~i-~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g---Hs~~Vt--sLaFSP 1962 (2004)
.|++||+++++.. ..+.. .|...|++++|+|+|.+|++|+ |+.|++||+++++....+.. |...+. +++|+|
T Consensus 193 ~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3lrv_A 193 ILDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD 270 (343)
T ss_dssp CEEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT
T ss_pred EEEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC
Confidence 9999999999887 55532 3678999999999999999999 55999999998877655443 444444 699999
Q ss_pred CCCEEEEEEC-CCeEEEEECCCC-eEEEE
Q psy8748 1963 NGMALVTSSW-DQFVKVWQESNT-IVWKV 1989 (2004)
Q Consensus 1963 Dg~~LaSgS~-DGtIrIWdlstg-~l~k~ 1989 (2004)
+|++|++++. |+.|++|+++++ +.|..
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred CCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 9999999998 999999999644 34554
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=1.4e-22 Score=243.80 Aligned_cols=281 Identities=12% Similarity=0.173 Sum_probs=199.0
Q ss_pred ceeEEEEeCCCC---EEEEEeCCCeEEEEECCCC---ceEEEeeCCCCceEEEEEecCCCEEEEe--ecCCeEEEEEcCC
Q psy8748 1694 KVNSVHYSGDSR---HCVSGSLDGKLIIWDTWTG---NKTQVIPLRSAWVMSVAFAQSGNFVACG--GMDNMCTVYDLNN 1765 (2004)
Q Consensus 1694 ~VtsLaFSPDG~---~LASGS~DGtIrVWDl~Tg---k~l~ti~~Ht~~ItsLafSPdg~~LaSG--S~DGtIrVWDl~t 1765 (2004)
.+.++.|-.-|- .+++++. ..|++|+..++ +.+++.+.|..+|..+.+.||...|++. +.=..-.++.+--
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 356676754333 6788875 68999999999 8899999999999999998865433222 1111112222211
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCCCcEEEee---cCCeEEEEECCC-CceeEEeeccccCCeEEEEECC---CCCE
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGS---GDMKIVTWNLET-GQRIHEVAQAHIGDVVSISLSP---DGQY 1838 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS---~DGtI~IWDl~t-g~~i~~il~~h~~~ItsLafSP---dg~~ 1838 (2004)
..............++...+..+ +++.++.++ .|+.|++|++.. ++.+ .....|...++.++|++ ++.+
T Consensus 120 spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~-~s~~~~~~~v~~l~fs~~~g~~~~ 195 (356)
T 2w18_A 120 SSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGK-ENQFLMPPEETILTFAEVQGMQEA 195 (356)
T ss_dssp ------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEE-EEEEECCCSSCEEEEEEEETSTTE
T ss_pred CCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCcee-eeeccCCCceeeEEeeccCCCCce
Confidence 10000111111112233333332 456666654 499999999955 6554 44458888999999999 7799
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEecCCC---CeEEEEEeCCCCEE------------EEEECCCeEEEEEccCCceeEE
Q psy8748 1839 FVTGSVDKSCKLWDFREKKCVQTFFGHEA---DVNSVCFHPSGLAF------------ATGSEDKTARLFDIRADQQIAT 1903 (2004)
Q Consensus 1839 LaSGS~DGsIrIWDlrs~k~I~tl~~h~s---~ItsIafSPdg~~L------------aSgS~DGtIrIWDLrtgk~i~t 1903 (2004)
|++|+.|++|+|||+++++.++++.+|.. .+.+++|+|+|.++ ++|+.|++|++||..+++.+..
T Consensus 196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v 275 (356)
T 2w18_A 196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV 275 (356)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEE
T ss_pred EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE
Confidence 99999999999999999999999986543 57788999999876 5678899999999999988765
Q ss_pred Ec---CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeE-EEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1904 YL---PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVT-SISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1904 ~~---~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~Vt-sLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
+. ..++...+.+..+ ++.++++|+.||+|+|||+.+++++.++.+|...+. .++|+|||++|++|+.|++|+||
T Consensus 276 ~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 276 MLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp EEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred EEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 42 2344444444444 488999999999999999999999999999987655 68999999999999999999999
Q ss_pred EC
Q psy8748 1980 QE 1981 (2004)
Q Consensus 1980 dl 1981 (2004)
|+
T Consensus 354 d~ 355 (356)
T 2w18_A 354 HY 355 (356)
T ss_dssp EE
T ss_pred cC
Confidence 85
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=1.1e-23 Score=257.21 Aligned_cols=210 Identities=19% Similarity=0.182 Sum_probs=155.6
Q ss_pred cccccccccceeEEEEeC--------CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCC-EEEEeecC
Q psy8748 1685 KKSLKGHINKVNSVHYSG--------DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN-FVACGGMD 1755 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSP--------DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~D 1755 (2004)
...+.||.+.|++++|+| |+++||+|+.|++|+|||+.++.....+..|...|.+++|+|++. +|++|+.|
T Consensus 129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 208 (393)
T 4gq1_A 129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN 208 (393)
T ss_dssp ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC
Confidence 345778999999999998 889999999999999999999988888888999999999999874 89999999
Q ss_pred CeEEEEEcCCCCCCCcce-------------------EEEEEecCccceeeeEEe--CCCcEEEeecCCeEEEEECCCCc
Q psy8748 1756 NMCTVYDLNNRDSTGAAK-------------------VIRELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQ 1814 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k-------------------~i~sl~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~ 1814 (2004)
|.|++||+.++....... ......+|...+.++.|. ++..+++++.|+.+++||+..+.
T Consensus 209 ~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~ 288 (393)
T 4gq1_A 209 GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN 288 (393)
T ss_dssp SEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----
T ss_pred CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC
Confidence 999999998754221110 111234577788888886 45679999999999999998766
Q ss_pred eeEEeeccccCCeEE------------------EEECC--CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEE
Q psy8748 1815 RIHEVAQAHIGDVVS------------------ISLSP--DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCF 1874 (2004)
Q Consensus 1815 ~i~~il~~h~~~Its------------------LafSP--dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIaf 1874 (2004)
....+ ..|...+.. ..+++ ++.++++|+.||.|++||..+++.......|..+|.+++|
T Consensus 289 ~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svaf 367 (393)
T 4gq1_A 289 DYNEI-SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCW 367 (393)
T ss_dssp ----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEE
T ss_pred CCceE-eeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEE
Confidence 54322 222222222 23333 3346677888999999999999888888899999999999
Q ss_pred eCCCCEEEEEECCCeEEEEEcc
Q psy8748 1875 HPSGLAFATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1875 SPdg~~LaSgS~DGtIrIWDLr 1896 (2004)
+|+|++|++++.+| +.+|.+.
T Consensus 368 spdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 368 HQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CTTSSEEEEEESSE-EEEEEEG
T ss_pred cCCCCEEEEEeCCC-eEEEEEe
Confidence 99999999998665 6677654
No 127
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=1.6e-21 Score=255.04 Aligned_cols=279 Identities=12% Similarity=0.077 Sum_probs=209.0
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
..|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++|++.++.
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~--- 183 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR--- 183 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE---
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC---
Confidence 46889999999999999986 999999998883 4445667788899999999999999887 4689999997642
Q ss_pred cceEEEEEecCcc----------------ceeeeEEeCCC-cEEEeecCC------------------------------
Q psy8748 1771 AAKVIRELLGYEG----------------FLSSCRFIDDT-TLLTGSGDM------------------------------ 1803 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~----------------~Vssvafsdd~-~LlSgS~DG------------------------------ 1803 (2004)
.......+.. .+..+.|++++ .+++++.|+
T Consensus 184 ---~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 184 ---QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp ---EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred ---EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 1111111211 14678898665 477776654
Q ss_pred ---eEEEEECCC-CceeEEeec-cccCCeEEEEECCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEecCCC----Ce
Q psy8748 1804 ---KIVTWNLET-GQRIHEVAQ-AHIGDVVSISLSPDGQYFVTGSV-----DKSCKLWDFREKKCVQTFFGHEA----DV 1869 (2004)
Q Consensus 1804 ---tI~IWDl~t-g~~i~~il~-~h~~~ItsLafSPdg~~LaSGS~-----DGsIrIWDlrs~k~I~tl~~h~s----~I 1869 (2004)
.|++||+.+ ++....... .+...+.+++| |||++|++++. ++.|++||+.+++....+..+.. .+
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLH 339 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence 899999988 775432222 46678999999 99999987764 56799999999987776655543 45
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEEcc-CCceeEEEcCCCCCCCeEEE-EEcCCCCEEEE-EeCCC--eEEEEECCC-Ce
Q psy8748 1870 NSVCFHPSGLAFATGSEDKTARLFDIR-ADQQIATYLPPNKNSGFTSC-AVSSSGRYIFC-GSDDN--NVHVWDLLK-TT 1943 (2004)
Q Consensus 1870 tsIafSPdg~~LaSgS~DGtIrIWDLr-tgk~i~t~~~~~~~s~ItsL-afSPdG~~LaS-GSsDG--sIrIWDL~t-ge 1943 (2004)
.+++|+|||+++++++.||.+++|.+. +++ ...+ ..+...+..+ .|+|+|+.|+. ++.++ .+++|++.. +.
T Consensus 340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l--~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL--THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp SCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES--CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred CceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee--eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 689999999999999999988888775 344 4444 2344567776 59999997765 44455 899999864 55
Q ss_pred eeEEEccCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCC
Q psy8748 1944 HNGVLSGHENRVTSISLSPNGMALVTSSWD----QFVKVWQESNT 1984 (2004)
Q Consensus 1944 ~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D----GtIrIWdlstg 1984 (2004)
....+.. ...+..++|+|||++|+....+ +.+.+|+..++
T Consensus 417 ~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 417 QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 5666665 6678999999999998876544 57899998664
No 128
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=7.4e-21 Score=260.31 Aligned_cols=276 Identities=14% Similarity=0.129 Sum_probs=211.8
Q ss_pred ceeEEEEeCCCCEEEEEeC------------CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1694 KVNSVHYSGDSRHCVSGSL------------DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~------------DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
....++|+| | ++++++. +....+|....+.....+..|...+.++.|+++ ..+++++.+|.+.+|
T Consensus 153 ~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~ 229 (1045)
T 1k32_A 153 PATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIY 229 (1045)
T ss_dssp SCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEE
T ss_pred CcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEE
Confidence 345788999 8 8888753 234566654343555566889999999999988 677788888999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeec----------cccCCeEEEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ----------AHIGDVVSIS 1831 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~----------~h~~~ItsLa 1831 (2004)
.++... .....+..+. .+....|++++..++.+.++.|++||..... +..+.. .|...+.+++
T Consensus 230 ~~~~~g-----~~~~~l~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~ 302 (1045)
T 1k32_A 230 STDLDG-----KDLRKHTSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAED 302 (1045)
T ss_dssp EEETTS-----CSCEECCCCC-SSCEEEEEESSSCEEEEETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEE
T ss_pred EEeCCC-----CcceEecCCC-CcceeeEcCCCCEEEEEeCCEEEEecCCceE-eeeeccCcccccccccccccccceee
Confidence 876421 1122333333 3455677766553333469999999995443 322211 1334689999
Q ss_pred EC-CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC-CeEEEEEeCCCCEEEEEECCCeEE-EEEccCCceeEEEcCCC
Q psy8748 1832 LS-PDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA-DVNSVCFHPSGLAFATGSEDKTAR-LFDIRADQQIATYLPPN 1908 (2004)
Q Consensus 1832 fS-Pdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s-~ItsIafSPdg~~LaSgS~DGtIr-IWDLrtgk~i~t~~~~~ 1908 (2004)
|+ |+|+++++++ ++.|++|+...+... .+..|.. .+.+++|+ +|+.+++++.++.+. +||+.+++.. .+. .
T Consensus 303 ~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~--~ 376 (1045)
T 1k32_A 303 FSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE--E 376 (1045)
T ss_dssp EEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC--C
T ss_pred ecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec--C
Confidence 99 9999999888 889999999887644 4566777 89999999 999999999888898 9999876543 332 4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCC----------eEEE
Q psy8748 1909 KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQ----------FVKV 1978 (2004)
Q Consensus 1909 ~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DG----------tIrI 1978 (2004)
+...+..++|+|||++|++++.++.|++||+.+++......+|.+.+.+++|+|||++|++++.++ .|++
T Consensus 377 ~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 377 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 557799999999999999999999999999999998888878999999999999999999887654 8999
Q ss_pred EECCCCe
Q psy8748 1979 WQESNTI 1985 (2004)
Q Consensus 1979 Wdlstg~ 1985 (2004)
||+.+++
T Consensus 457 ~d~~~g~ 463 (1045)
T 1k32_A 457 YDMEGRK 463 (1045)
T ss_dssp EETTTTE
T ss_pred EECCCCc
Confidence 9999875
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.88 E-value=8.7e-21 Score=228.22 Aligned_cols=284 Identities=15% Similarity=0.125 Sum_probs=191.7
Q ss_pred eEEEEEccC-CCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcchhh
Q psy8748 1558 RNAVSFHAC-STLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSINIY 1636 (2004)
Q Consensus 1558 VtsVsFSPd-Gk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSidi~ 1636 (2004)
+.+|-|-.. ++.+..+.....+|++|+..+ ...-+...+|.++...+.. +...|+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~----------~~~~~~~~~~~~~~~~v~~--------~~~~~~~~---- 99 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALD----------AWQWEKLYTWHFAEVPVLQ--------IVPVPDVY---- 99 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESS----------SSBEEEEEEEECCSSCEEE--------ECCCTTCC----
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCC----------CccceeeEEEeccCceeEE--------EEEcCccc----
Confidence 566666444 444444345689999999988 1112788889886655444 22233221
Q ss_pred hhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCC----CCEEEEEeC
Q psy8748 1637 LKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGD----SRHCVSGSL 1712 (2004)
Q Consensus 1637 i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPD----G~~LASGS~ 1712 (2004)
...++.-=.-|.+.|++++|+|| ++++++++.
T Consensus 100 --------------------------------------------~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~ 135 (356)
T 2w18_A 100 --------------------------------------------NLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGN 135 (356)
T ss_dssp --------------------------------------------SCEEEEECSSSEEEEEEECC------CCEEEEEEEE
T ss_pred --------------------------------------------ceeeeeeccccccceEEEEECCCccccccEEEeCCC
Confidence 11111111226789999999999 999999885
Q ss_pred CCeEEEEECCCCceEEE-eeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1713 DGKLIIWDTWTGNKTQV-IPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk~l~t-i~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.+++|++.+++.+.. ..+|...|..++|+|+|+. .....+|...+..++|+
T Consensus 136 --~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~--------------------------~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 136 --IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGG--------------------------KENQFLMPPEETILTFA 187 (356)
T ss_dssp --EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCE--------------------------EEEEEECCCSSCEEEEE
T ss_pred --eEEEEecCCCcEEEecccCCCCcEEEEEECCCCce--------------------------eeeeccCCCceeeEEee
Confidence 488897655554444 2344444444444444433 33444566666666665
Q ss_pred C----CCcEEEeecCCeEEEEECCCCceeEEeeccc--cCCeEEEEECCCCCEE------------EEEECCCeEEEEEC
Q psy8748 1792 D----DTTLLTGSGDMKIVTWNLETGQRIHEVAQAH--IGDVVSISLSPDGQYF------------VTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1792 d----d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h--~~~ItsLafSPdg~~L------------aSGS~DGsIrIWDl 1853 (2004)
+ +..+++++.|++|++||+.+++.+..+..++ ...+.+++|+|+|.++ ++|+.|++|++||.
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 3 3568899999999999999999887764332 3467888999999876 56788999999999
Q ss_pred CCCeEEEEE-----ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC-eEEEEEcCCCCEEEE
Q psy8748 1854 REKKCVQTF-----FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG-FTSCAVSSSGRYIFC 1927 (2004)
Q Consensus 1854 rs~k~I~tl-----~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~-ItsLafSPdG~~LaS 1927 (2004)
.+++.+..+ .+|...+.+..++ +..+++|+.||+|+|||+.+++.+.++. +|... +.+++|+|||++|++
T Consensus 268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~--gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 268 KTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP--PVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp TTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC--CC--CCCCEEEECSSSSEEEE
T ss_pred CCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec--CCCCCeEEEEEECCCCCEEEE
Confidence 999887665 3565555444444 7899999999999999999999999884 34343 446899999999999
Q ss_pred EeCCCeEEEEEC
Q psy8748 1928 GSDDNNVHVWDL 1939 (2004)
Q Consensus 1928 GSsDGsIrIWDL 1939 (2004)
|+.|++|+|||+
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999995
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=5e-21 Score=236.16 Aligned_cols=292 Identities=17% Similarity=0.123 Sum_probs=225.8
Q ss_pred ccceeEEEEeCCCC-EEEEEe----CCC----eEEEEEC--CCCceE--EEeeCCCCceEEEEEec--------------
Q psy8748 1692 INKVNSVHYSGDSR-HCVSGS----LDG----KLIIWDT--WTGNKT--QVIPLRSAWVMSVAFAQ-------------- 1744 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~-~LASGS----~DG----tIrVWDl--~Tgk~l--~ti~~Ht~~ItsLafSP-------------- 1744 (2004)
...|+..+|++.|. ++++|+ .|| .|++||+ .+++.+ ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 35788888988775 566776 467 8999999 999877 45788888888777764
Q ss_pred CCCEEEEeecC------CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCC---eEEEEECCCCc
Q psy8748 1745 SGNFVACGGMD------NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDM---KIVTWNLETGQ 1814 (2004)
Q Consensus 1745 dg~~LaSGS~D------GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DG---tI~IWDl~tg~ 1814 (2004)
.+..++.++.+ +.|++||++.. ....+.+|...+.++.|++++ .+++++.++ .|++||+.+++
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~-------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGY-------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA 214 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSC-------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCC-------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence 15566666554 79999999642 234556678899999999665 577777765 99999999987
Q ss_pred eeEEeeccccCCeEEEEECCCCCEEE-EEECCCe--EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-CC--
Q psy8748 1815 RIHEVAQAHIGDVVSISLSPDGQYFV-TGSVDKS--CKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE-DK-- 1888 (2004)
Q Consensus 1815 ~i~~il~~h~~~ItsLafSPdg~~La-SGS~DGs--IrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~-DG-- 1888 (2004)
.. ....+.+.+.+++|+|+|+.|+ +++.+|. |++||+.+++. ..+..|...+.+++|+|+|++|++++. +|
T Consensus 215 ~~--~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 215 VR--QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EE--EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred EE--EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCc
Confidence 75 2346778899999999999888 5555554 99999988875 567788889999999999999988886 44
Q ss_pred eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC
Q psy8748 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD---NNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM 1965 (2004)
Q Consensus 1889 tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD---GsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~ 1965 (2004)
.|++||+.+++.. .+ ..+...+.+++|+|+|++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+|+|+
T Consensus 292 ~i~~~d~~~~~~~-~l--~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~ 366 (415)
T 2hqs_A 292 QVYKVNINGGAPQ-RI--TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGT 366 (415)
T ss_dssp EEEEEETTSSCCE-EC--CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSS
T ss_pred EEEEEECCCCCEE-EE--ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCC
Confidence 6888898877643 22 2334568899999999999988764 58999999988764 455554 899999999999
Q ss_pred EEEEEECCC---eEEEEECCCCeEEEEEEeecCCCCcccc
Q psy8748 1966 ALVTSSWDQ---FVKVWQESNTIVWKVLKVYNLEKKTIFC 2002 (2004)
Q Consensus 1966 ~LaSgS~DG---tIrIWdlstg~l~k~Ik~~~~h~~~Vts 2002 (2004)
+|++++.|+ .|++|++.++.. +....|.+.|.+
T Consensus 367 ~l~~~s~~~~~~~l~~~d~~g~~~----~~l~~~~~~v~~ 402 (415)
T 2hqs_A 367 MVIYSSSQGMGSVLNLVSTDGRFK----ARLPATDGQVKF 402 (415)
T ss_dssp EEEEEEEETTEEEEEEEETTSCCE----EECCCSSSEEEE
T ss_pred EEEEEEcCCCccEEEEEECCCCcE----EEeeCCCCCCcC
Confidence 999998877 899999986542 334456666654
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=7.2e-21 Score=234.76 Aligned_cols=245 Identities=13% Similarity=0.066 Sum_probs=195.2
Q ss_pred CCEEEEEeCC------CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCC---eEEEEEcCCCCCCCcceE
Q psy8748 1704 SRHCVSGSLD------GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDN---MCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1704 G~~LASGS~D------GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG---tIrVWDl~t~~~~~~~k~ 1774 (2004)
+..++.++.+ +.|++||+. +.....+..|...|.+++|+|+|+.|++++.++ .|++||+.+++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~------- 214 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------- 214 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc-------
Confidence 4555555443 799999986 555677778899999999999999999999875 99999998653
Q ss_pred EEEEecCccceeeeEEeCCCc-EE-EeecCC--eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC-CC--e
Q psy8748 1775 IRELLGYEGFLSSCRFIDDTT-LL-TGSGDM--KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV-DK--S 1847 (2004)
Q Consensus 1775 i~sl~gh~~~Vssvafsdd~~-Ll-SgS~DG--tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~-DG--s 1847 (2004)
...+..+...+.++.|++++. ++ +++.+| .|++||+.+++.. .+..|...+.+++|+|+|++|++++. +| .
T Consensus 215 ~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~--~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 215 VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--ECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE--eCcCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence 134556777899999997765 55 555554 4999999988763 34567788999999999999998886 44 6
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED---KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1848 IrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D---GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
|++||+.+++. ..+..+...+.+++|+|+|++|++++.+ +.|++||+.+++.. .+. .+ ..+.+++|+|+|++
T Consensus 293 i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~--~~-~~~~~~~~spdg~~ 367 (415)
T 2hqs_A 293 VYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS--ST-FLDETPSLAPNGTM 367 (415)
T ss_dssp EEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC--CS-SSCEEEEECTTSSE
T ss_pred EEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec--CC-CCcCCeEEcCCCCE
Confidence 88889988764 4455677789999999999999988764 58999999988763 332 22 27899999999999
Q ss_pred EEEEeCCC---eEEEEECCCCeeeEEEccCCCCeEEEEEcCCC
Q psy8748 1925 IFCGSDDN---NVHVWDLLKTTHNGVLSGHENRVTSISLSPNG 1964 (2004)
Q Consensus 1925 LaSGSsDG---sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg 1964 (2004)
|++++.++ .|++||+. +.....+.+|.+.|.+++|+|.-
T Consensus 368 l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred EEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 99888876 89999986 66677888999999999999864
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.86 E-value=2e-19 Score=230.28 Aligned_cols=253 Identities=16% Similarity=0.179 Sum_probs=197.1
Q ss_pred cceeEEEEeC----CCCEEEEEeC-CCeEEEEECCCCceEEEeeCC-----------CCceEEEEEecCCC-EEEEeecC
Q psy8748 1693 NKVNSVHYSG----DSRHCVSGSL-DGKLIIWDTWTGNKTQVIPLR-----------SAWVMSVAFAQSGN-FVACGGMD 1755 (2004)
Q Consensus 1693 ~~VtsLaFSP----DG~~LASGS~-DGtIrVWDl~Tgk~l~ti~~H-----------t~~ItsLafSPdg~-~LaSGS~D 1755 (2004)
..+..++|+| ||+++++++. +++|.+||..+++.+..+..+ ...+.++.++|++. ++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 4578999999 9999998884 899999999999999888653 23789999999765 56677788
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEe-ecCCeEEEEECCCCceeEEeecc---ccCCeEEE
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTG-SGDMKIVTWNLETGQRIHEVAQA---HIGDVVSI 1830 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSg-S~DGtI~IWDl~tg~~i~~il~~---h~~~ItsL 1830 (2004)
|.|.+||+.+.+. .. ...+ .+...+..+.|++++. ++++ ..++.|.+||..+++....+..+ |.+....+
T Consensus 302 g~i~vvd~~~~~~---l~-~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 302 GKVLLVNYKDIDN---LT-VTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp TEEEEEECTTSSS---CE-EEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred CeEEEEEecCCCc---ce-eEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence 9999999976532 11 1222 3456677888986654 5544 46899999999999887655322 54444443
Q ss_pred EECCC-CCEEEEEE-CCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEeCCCCEEEEEE-------CCCeEEEEE
Q psy8748 1831 SLSPD-GQYFVTGS-VDKSCKLWDFRE-------KKCVQTFFGHEADVNSVCFHPSGLAFATGS-------EDKTARLFD 1894 (2004)
Q Consensus 1831 afSPd-g~~LaSGS-~DGsIrIWDlrs-------~k~I~tl~~h~s~ItsIafSPdg~~LaSgS-------~DGtIrIWD 1894 (2004)
++|+ +..++++. .|++|.+||..+ ++.++++..|...+..++++|+++++++++ .+++|.+||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 5777 55555554 579999999998 899999999998899999999999999987 267999999
Q ss_pred ccCCceeEEEc-------CCCCCCCeEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCeeeEEEccC
Q psy8748 1895 IRADQQIATYL-------PPNKNSGFTSCAVSSSGRYIFCGS-----DDNNVHVWDLLKTTHNGVLSGH 1951 (2004)
Q Consensus 1895 Lrtgk~i~t~~-------~~~~~s~ItsLafSPdG~~LaSGS-----sDGsIrIWDL~tge~l~tL~gH 1951 (2004)
+.+++...... ...+...+..+.|+|+|+.++++. .++.|.|||..++++++.++.+
T Consensus 456 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 456 LKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp TTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 99998773331 123356789999999999999763 3799999999999999998854
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=3e-19 Score=209.40 Aligned_cols=277 Identities=13% Similarity=0.143 Sum_probs=202.3
Q ss_pred EEEeCCCCE-EEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeec-CCeEEEEEcCCCCCCCcceEE
Q psy8748 1698 VHYSGDSRH-CVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGM-DNMCTVYDLNNRDSTGAAKVI 1775 (2004)
Q Consensus 1698 LaFSPDG~~-LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~-DGtIrVWDl~t~~~~~~~k~i 1775 (2004)
..|.+++++ +++++.++.|.+||..+++....+..+...+ +++|+|+++++++++. ++.|.+||..++.. ..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-----~~ 76 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-----KV 76 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-----EE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-----eE
Confidence 345665555 6778889999999999999988888777777 9999999997766655 88999999986531 13
Q ss_pred EEEecCccceeeeEEeCCCc-EEEeecCC---eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE-ECCCe-EE
Q psy8748 1776 RELLGYEGFLSSCRFIDDTT-LLTGSGDM---KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG-SVDKS-CK 1849 (2004)
Q Consensus 1776 ~sl~gh~~~Vssvafsdd~~-LlSgS~DG---tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG-S~DGs-Ir 1849 (2004)
.....+.....++.|++++. ++++..++ .|.+||+.+++....+ .......+++|+|+|++++++ ..++. |.
T Consensus 77 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~i~ 154 (331)
T 3u4y_A 77 VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI--PIPYDAVGIAISPNGNGLILIDRSSANTVR 154 (331)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEE--ECCTTEEEEEECTTSSCEEEEEETTTTEEE
T ss_pred EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEE--ECCCCccceEECCCCCEEEEEecCCCceEE
Confidence 44444555555488886655 55444442 8999999998877554 234557899999999865555 55578 99
Q ss_pred EEECCCCeEE----EEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCce---eEEEcCCCCCCCeEEEEEcCC
Q psy8748 1850 LWDFREKKCV----QTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQ---IATYLPPNKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1850 IWDlrs~k~I----~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~---i~t~~~~~~~s~ItsLafSPd 1921 (2004)
+|++.....+ .........+.+++|+|+|+++++++ .++.|.+||+.+++. +..+.. ...+..++|+|+
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~~~spd 231 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT---NNLPGTIVVSRD 231 (331)
T ss_dssp EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---SSCCCCEEECTT
T ss_pred EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC---CCCCceEEECCC
Confidence 9998754332 12224456689999999999766555 688999999998887 666642 255678999999
Q ss_pred CCEEEEEe-CCCeEEEEECCCCee--eEEEccC----CC---CeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCe
Q psy8748 1922 GRYIFCGS-DDNNVHVWDLLKTTH--NGVLSGH----EN---RVTSISLSPNGMALVTSSW-DQFVKVWQESNTI 1985 (2004)
Q Consensus 1922 G~~LaSGS-sDGsIrIWDL~tge~--l~tL~gH----s~---~VtsLaFSPDg~~LaSgS~-DGtIrIWdlstg~ 1985 (2004)
|+++++++ .++.|.+||..+++. +..+..+ .. ...+++|+|||++|++++. ++.|.+|++.+..
T Consensus 232 g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 232 GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 99877665 478899999999887 4433322 22 2356899999998876655 5799999998864
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=5.1e-19 Score=206.51 Aligned_cols=282 Identities=13% Similarity=0.192 Sum_probs=197.5
Q ss_pred EEEEEeCCCeEEEEECC-CCc--eEEEeeCCCCceEEEEEecCCCEEEEeecC-CeEEEEEcCCCCCCCcceEEEEEecC
Q psy8748 1706 HCVSGSLDGKLIIWDTW-TGN--KTQVIPLRSAWVMSVAFAQSGNFVACGGMD-NMCTVYDLNNRDSTGAAKVIRELLGY 1781 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~-Tgk--~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D-GtIrVWDl~t~~~~~~~k~i~sl~gh 1781 (2004)
.+++++.|+.|++||+. +++ .... ..+...+.+++|+|+++++++++.+ +.|.+|+++... ........+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD--GALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT--CCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC--CceeeccccccC
Confidence 34445779999999985 343 2333 3466788999999999988888876 999999997211 122333444433
Q ss_pred ccceeeeEEeCCCc-EEEee-cCCeEEEEECCCCc---eeEEeeccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCC
Q psy8748 1782 EGFLSSCRFIDDTT-LLTGS-GDMKIVTWNLETGQ---RIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFRE 1855 (2004)
Q Consensus 1782 ~~~Vssvafsdd~~-LlSgS-~DGtI~IWDl~tg~---~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs 1855 (2004)
. .+..++|++++. +++++ .++.|.+||+..+. .... . .....+.+++|+|+++++++++ .++.|++||+.+
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV-V-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-E-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc-c-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 3 778888986654 55555 48899999995332 2222 2 2344688999999999888887 899999999987
Q ss_pred -CeEEE----EEec-CCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccC--Cce--eEEEc-CC---CCCCCeEEEEEcC
Q psy8748 1856 -KKCVQ----TFFG-HEADVNSVCFHPSGLAFATGS-EDKTARLFDIRA--DQQ--IATYL-PP---NKNSGFTSCAVSS 1920 (2004)
Q Consensus 1856 -~k~I~----tl~~-h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrt--gk~--i~t~~-~~---~~~s~ItsLafSP 1920 (2004)
++... .... ....+.+++|+|+++++++++ .++.|.+||+.. ++. ..... .. .....+..++|+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 161 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP 240 (343)
T ss_dssp TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence 54432 2222 345788999999999776655 789999999953 332 22221 11 1124567899999
Q ss_pred CCCEEEEEe-CCCeEEEEECC----CCeeeEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECC--CCeEEEEEEe
Q psy8748 1921 SGRYIFCGS-DDNNVHVWDLL----KTTHNGVLSGHENRVTSISLSPNGMALVTSS-WDQFVKVWQES--NTIVWKVLKV 1992 (2004)
Q Consensus 1921 dG~~LaSGS-sDGsIrIWDL~----tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS-~DGtIrIWdls--tg~l~k~Ik~ 1992 (2004)
+|++++++. .++.|++||+. +.+.+..+..+.. +.+++|+|+|++|++++ .|+.|.+|+++ ++. ++.+..
T Consensus 241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~-~~~~~~ 318 (343)
T 1ri6_A 241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL-LHEKGR 318 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE-EEEEEE
T ss_pred CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCce-eeEccc
Confidence 999887554 78999999998 2344555555444 89999999999988887 58999999554 554 444554
Q ss_pred ecC
Q psy8748 1993 YNL 1995 (2004)
Q Consensus 1993 ~~~ 1995 (2004)
+..
T Consensus 319 ~~~ 321 (343)
T 1ri6_A 319 YAV 321 (343)
T ss_dssp EEC
T ss_pred ccc
Confidence 443
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=3.1e-19 Score=207.80 Aligned_cols=275 Identities=15% Similarity=0.060 Sum_probs=210.6
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCCCC--ceEEEEEecCCCEE-EEeecCCeEEEEEcCCCCCCCcceEEEEEec-
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSA--WVMSVAFAQSGNFV-ACGGMDNMCTVYDLNNRDSTGAAKVIRELLG- 1780 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~--~ItsLafSPdg~~L-aSGS~DGtIrVWDl~t~~~~~~~k~i~sl~g- 1780 (2004)
+++++++.++.|++||..+++....+..... .+.+++|+|+++.+ +++..++.|.+||+.+++ ....+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~------~~~~~~~~ 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE------TLGRIDLS 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC------EEEEEECC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC------eEeeEEcC
Confidence 4789999999999999999998888764432 47899999999765 555667899999997653 2222221
Q ss_pred C----ccceeeeEEeCCC-cEEEee------------cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE
Q psy8748 1781 Y----EGFLSSCRFIDDT-TLLTGS------------GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1781 h----~~~Vssvafsdd~-~LlSgS------------~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
+ ...+..+.|++++ .++++. .++.|.+||..+++....+. ....+.+++|+|+|++++++
T Consensus 76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGL- 152 (337)
T ss_dssp BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEE-
T ss_pred CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCCEEEEe-
Confidence 1 2256678888665 566664 57999999999887765543 24567889999999988888
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC------------------------eEEEEEccCCc
Q psy8748 1844 VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK------------------------TARLFDIRADQ 1899 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG------------------------tIrIWDLrtgk 1899 (2004)
++.|++||+.+++....+..+.. ...+.|+|++..++..+.++ .|.+||+.+++
T Consensus 153 -~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 153 -GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp -SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred -CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 68999999999988877754431 11237899988765554332 47899999887
Q ss_pred eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1900 QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1900 ~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
.. ......+...+..++|+|+|++++++ ++.|++||+.+++....+..+ ..+.+++|+|+|++|++++.|+.|++|
T Consensus 231 ~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~ 306 (337)
T 1pby_B 231 MA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAY 306 (337)
T ss_dssp EE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred ce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEE
Confidence 75 33333344567899999999999988 799999999999988877643 567899999999999999999999999
Q ss_pred ECCCCeEEEEEEeec
Q psy8748 1980 QESNTIVWKVLKVYN 1994 (2004)
Q Consensus 1980 dlstg~l~k~Ik~~~ 1994 (2004)
|+.+++....+....
T Consensus 307 d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 307 DAETLEKKGQVDLPG 321 (337)
T ss_dssp ETTTCCEEEEEECGG
T ss_pred ECcCCcEEEEEEcCC
Confidence 999998777666543
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=5.1e-20 Score=240.94 Aligned_cols=284 Identities=10% Similarity=0.088 Sum_probs=217.5
Q ss_pred ccceeEEEEeCCCCEEEEEeC-CC-----eEEEEECCCCceEEEeeCCCC------------------------ceEEEE
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSL-DG-----KLIIWDTWTGNKTQVIPLRSA------------------------WVMSVA 1741 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~-DG-----tIrVWDl~Tgk~l~ti~~Ht~------------------------~ItsLa 1741 (2004)
...|.+++|||||++|++++. || .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 899999999988777755432 378999
Q ss_pred EecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeec
Q psy8748 1742 FAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ 1821 (2004)
Q Consensus 1742 fSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~ 1821 (2004)
|+|||++|++++. +.|++||+.++.. .....+..+...+..+.|++++..++...++.|++||+.+++... +..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~----~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~-~~~ 189 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGK----AAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ-LTA 189 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCST----TSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE-CCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCc----ceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE-ecc
Confidence 9999999999886 9999999976510 012234556677899999988775555557799999999877653 222
Q ss_pred cccCC----------------eEEEEECCCCCEEEEEECCC---------------------------------eEEEEE
Q psy8748 1822 AHIGD----------------VVSISLSPDGQYFVTGSVDK---------------------------------SCKLWD 1852 (2004)
Q Consensus 1822 ~h~~~----------------ItsLafSPdg~~LaSGS~DG---------------------------------sIrIWD 1852 (2004)
.+... +.+++|+|||++|++++.|+ .|++||
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 22221 47899999999999988765 789999
Q ss_pred CCC-CeEEEEEe--cCCCCeEEEEEeCCCCEEEEEEC-----CCeEEEEEccCCceeEEEcCCCC--CCCeEEEEEcCCC
Q psy8748 1853 FRE-KKCVQTFF--GHEADVNSVCFHPSGLAFATGSE-----DKTARLFDIRADQQIATYLPPNK--NSGFTSCAVSSSG 1922 (2004)
Q Consensus 1853 lrs-~k~I~tl~--~h~s~ItsIafSPdg~~LaSgS~-----DGtIrIWDLrtgk~i~t~~~~~~--~s~ItsLafSPdG 1922 (2004)
+.+ ++...... .|...+.+++| |||++|++++. ++.|++||+.+++....+..... ...+..++|+|||
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence 988 77554433 36778999999 99999987764 56799999999887655532211 0134578999999
Q ss_pred CEEEEEeCCCeEEEEECC-CCeeeEEEccCCCCeEEE-EEcCCCCEEEEE-ECCC--eEEEEECCC
Q psy8748 1923 RYIFCGSDDNNVHVWDLL-KTTHNGVLSGHENRVTSI-SLSPNGMALVTS-SWDQ--FVKVWQESN 1983 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~-tge~l~tL~gHs~~VtsL-aFSPDg~~LaSg-S~DG--tIrIWdlst 1983 (2004)
+++++++.||.+++|.+. ++. ...+..|...|..+ .|+|+|+.|+.. +.|+ .+++|++..
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 999999999988888765 445 77788888889888 599999987654 4455 899999863
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=1.3e-18 Score=204.77 Aligned_cols=271 Identities=14% Similarity=0.054 Sum_probs=213.1
Q ss_pred cccceeEEEEeCCCCEEEEEeC-------CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEE-EeecCCeEEEEE
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSL-------DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVA-CGGMDNMCTVYD 1762 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~-------DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~La-SGS~DGtIrVWD 1762 (2004)
....+..++|+|+|+++++++. ++.|.+||..+++....+... ..+.+++|+|+|++++ ++..++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 4567889999999998888774 568999999999988888754 3478899999999555 455579999999
Q ss_pred cCCCCCCCcceEEEEEecCcc---------ceeeeEEeCCC-cEEEee--cCCeEEEEECCCCceeEEeeccccCCeEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEG---------FLSSCRFIDDT-TLLTGS--GDMKIVTWNLETGQRIHEVAQAHIGDVVSI 1830 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~---------~Vssvafsdd~-~LlSgS--~DGtI~IWDl~tg~~i~~il~~h~~~ItsL 1830 (2004)
..+++ ....+..+.. ...++.+++++ .+++++ .++.|.+||..+++....+ ..+...+.++
T Consensus 118 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~ 190 (353)
T 3vgz_A 118 AKTGE------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI-QNTGKMSTGL 190 (353)
T ss_dssp TTTCC------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE-CCCCTTCCCC
T ss_pred CCCCe------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe-cCCCCccceE
Confidence 97653 2333333221 25778888654 455554 4789999999998877554 3345558899
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeEEEEEec----CCCCeEEEEEeCCCCEEEEEECC-CeEEEEEccCCceeEEEc
Q psy8748 1831 SLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG----HEADVNSVCFHPSGLAFATGSED-KTARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1831 afSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~----h~s~ItsIafSPdg~~LaSgS~D-GtIrIWDLrtgk~i~t~~ 1905 (2004)
+|+|+++++++++.++.|.+||..+++.+..+.. +...+.+++|+|+++++++++.+ +.|.+||..+++....+.
T Consensus 191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 191 ALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp EEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 9999999999999999999999999998877754 45568889999999987777654 899999999998887775
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCC
Q psy8748 1906 PPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQ 1974 (2004)
Q Consensus 1906 ~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DG 1974 (2004)
... ...++|+|+|+++++++ .++.|.+||..+++.+..+..+ ..+.+++|+|+|++|+.+..++
T Consensus 271 ~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 271 APE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred cCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 432 24689999999776666 6899999999999988887653 4789999999999877776664
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=2.7e-19 Score=244.85 Aligned_cols=281 Identities=13% Similarity=0.092 Sum_probs=225.2
Q ss_pred ccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC-CceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT-GNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T-gk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
..+.+|.+.+.+++|+++ .++++++.||.+.+|.+.. +.....+..|. .+...+|+|+|+.++++ .++.|.+|+..
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~ 273 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD 273 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCC
Confidence 445789999999999988 6677888889999997653 44455555555 36678999999998887 48999999983
Q ss_pred CCCCCCcceEEEEEec-----------CccceeeeEEe-CCCc-EEEeecCCeEEEEECCCCceeEEeeccccC-CeEEE
Q psy8748 1765 NRDSTGAAKVIRELLG-----------YEGFLSSCRFI-DDTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIG-DVVSI 1830 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~g-----------h~~~Vssvafs-dd~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~-~ItsL 1830 (2004)
.. . +..+.+ +...+..+.|+ +++. +++++ ++.|++|+...+.... ...+.. .+.++
T Consensus 274 ~~------~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~--~~~~~~~~~~~~ 343 (1045)
T 1k32_A 274 TE------K-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK--VPEPLRIRYVRR 343 (1045)
T ss_dssp TC------C-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE--CSCCSCEEEEEE
T ss_pred ce------E-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE--ccCCCcceEEee
Confidence 32 1 112222 34468899999 7765 55544 8999999998876542 345666 89999
Q ss_pred EECCCCCEEEEEECCCeEE-EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCC
Q psy8748 1831 SLSPDGQYFVTGSVDKSCK-LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNK 1909 (2004)
Q Consensus 1831 afSPdg~~LaSGS~DGsIr-IWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~ 1909 (2004)
+|+ +|+.+++++.++.+. +||...++.. .+.+|...+.+++|+|+|+++++++.++.|++||+.+++...... .+
T Consensus 344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~--~~ 419 (1045)
T 1k32_A 344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER--SR 419 (1045)
T ss_dssp CSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CS
T ss_pred eEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc--CC
Confidence 999 999999999888899 9999877654 444777899999999999999999999999999999888766552 34
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC----------eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGSDDN----------NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGSsDG----------sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
...+..++|+|||++|++++.++ .|++||+.+++ ...+..|...+.+++|+|||++|++++.++...+|
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP 498 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCc
Confidence 56788999999999999887654 89999999887 67778888899999999999999999999888888
Q ss_pred ECCCC
Q psy8748 1980 QESNT 1984 (2004)
Q Consensus 1980 dlstg 1984 (2004)
+....
T Consensus 499 ~~~~~ 503 (1045)
T 1k32_A 499 DRVVL 503 (1045)
T ss_dssp CSSSS
T ss_pred chhcc
Confidence 86543
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.84 E-value=9.1e-19 Score=228.10 Aligned_cols=281 Identities=15% Similarity=0.150 Sum_probs=206.1
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC-----
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN----- 1765 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t----- 1765 (2004)
+...|.+++|||| +.++.+. ++.|++||+.+++... +..+...+.+++|+|||+.|+++ .++.|++|++.+
T Consensus 80 ~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 80 DAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp --CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred cccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 3467999999999 6666554 5999999998886654 44466778999999999999985 689999999986
Q ss_pred CCCCCcceEEEEEecCcc--------------ceeeeEEeCCCc-EEEee------------------------------
Q psy8748 1766 RDSTGAAKVIRELLGYEG--------------FLSSCRFIDDTT-LLTGS------------------------------ 1800 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~--------------~Vssvafsdd~~-LlSgS------------------------------ 1800 (2004)
+.. ......+.. .+.++.|++++. +++++
T Consensus 156 g~~------~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 156 SRA------IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp CCC------EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred CCc------EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 431 111111111 247888986654 66665
Q ss_pred ---cCCeEEEEECCCCceeEEee-ccccCCeEEEEECCCCCEEEEEECCC-----eEEEEECCCCeEEEEEe--cCCC--
Q psy8748 1801 ---GDMKIVTWNLETGQRIHEVA-QAHIGDVVSISLSPDGQYFVTGSVDK-----SCKLWDFREKKCVQTFF--GHEA-- 1867 (2004)
Q Consensus 1801 ---~DGtI~IWDl~tg~~i~~il-~~h~~~ItsLafSPdg~~LaSGS~DG-----sIrIWDlrs~k~I~tl~--~h~s-- 1867 (2004)
.++.|++||+.+++...... ..+...+.+++|+|||+++++++.++ .|++||..+++....+. .+..
T Consensus 230 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 230 TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 44789999999887643322 24667799999999999999988775 89999999983333332 2222
Q ss_pred -CeEEEEEeC--CCCEEEEEECCCeEEEEEcc-CCceeEEEcCCCCCCCeEE-EEEcCCCCEEEEEeC-CC----eEEEE
Q psy8748 1868 -DVNSVCFHP--SGLAFATGSEDKTARLFDIR-ADQQIATYLPPNKNSGFTS-CAVSSSGRYIFCGSD-DN----NVHVW 1937 (2004)
Q Consensus 1868 -~ItsIafSP--dg~~LaSgS~DGtIrIWDLr-tgk~i~t~~~~~~~s~Its-LafSPdG~~LaSGSs-DG----sIrIW 1937 (2004)
.+.+++|+| +|+++++++.||.+++|++. +++....+. .+...+.. ++|+|+|+.|+.++. ++ .|+.|
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 246789999 99999999999999999886 555555553 33455665 799999998876554 44 67778
Q ss_pred ECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCe
Q psy8748 1938 DLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWD----QFVKVWQESNTI 1985 (2004)
Q Consensus 1938 DL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D----GtIrIWdlstg~ 1985 (2004)
|+.+++ ...+. |...+.+++|+|||++++.++.+ +.|++||+.+++
T Consensus 388 d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 388 DIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 887765 33343 67789999999999998876544 569999999886
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.84 E-value=4e-18 Score=198.93 Aligned_cols=265 Identities=15% Similarity=0.194 Sum_probs=184.5
Q ss_pred cccceeEEEEeCCCCEEEEEeCC-CeEEEEECC--CCce--EEEeeCCCCceEEEEEecCCCEEEEeec-CCeEEEEEcC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLD-GKLIIWDTW--TGNK--TQVIPLRSAWVMSVAFAQSGNFVACGGM-DNMCTVYDLN 1764 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~D-GtIrVWDl~--Tgk~--l~ti~~Ht~~ItsLafSPdg~~LaSGS~-DGtIrVWDl~ 1764 (2004)
|...+.+++|+|+|+++++++.+ +.|.+|++. +++. +..+..+. .+.+++|+|+++++++++. ++.|.+|++.
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 45577889999999999988886 999999987 5553 34455444 7899999999998876654 8899999995
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEee-cCCeEEEEECCC-CceeE----EeeccccCCeEEEEECCCCC
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGS-GDMKIVTWNLET-GQRIH----EVAQAHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS-~DGtI~IWDl~t-g~~i~----~il~~h~~~ItsLafSPdg~ 1837 (2004)
.+. ......... ....+.++.|++++ .+++++ .++.|.+||+.+ ++... .........+.+++|+|+++
T Consensus 115 ~~~---~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~ 190 (343)
T 1ri6_A 115 DGL---PVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ 190 (343)
T ss_dssp TTE---EEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred CCc---ccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCC
Confidence 221 223333333 33457888888665 466666 899999999987 54321 12222345788999999999
Q ss_pred EEEEEE-CCCeEEEEECCC--CeE--EEEEec---C---CCCeEEEEEeCCCCEEEEEE-CCCeEEEEEcc--CC--cee
Q psy8748 1838 YFVTGS-VDKSCKLWDFRE--KKC--VQTFFG---H---EADVNSVCFHPSGLAFATGS-EDKTARLFDIR--AD--QQI 1901 (2004)
Q Consensus 1838 ~LaSGS-~DGsIrIWDlrs--~k~--I~tl~~---h---~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLr--tg--k~i 1901 (2004)
++++++ .++.|.+||+.. ++. ...... . ...+.+++|+|+|++++++. .++.|.+||+. ++ +.+
T Consensus 191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~ 270 (343)
T 1ri6_A 191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE 270 (343)
T ss_dssp EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence 776665 789999999953 332 222221 1 23567899999999887554 78999999998 33 333
Q ss_pred EEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEE--CCCCee--eEEEccCCCCeEEEEEcCCC
Q psy8748 1902 ATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWD--LLKTTH--NGVLSGHENRVTSISLSPNG 1964 (2004)
Q Consensus 1902 ~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWD--L~tge~--l~tL~gHs~~VtsLaFSPDg 1964 (2004)
..+.. . ..+..++|+|+|+++++++ .++.|.+|+ ..+++. +..+.. .....+++|.++.
T Consensus 271 ~~~~~--~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 271 GFQPT--E-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHE 334 (343)
T ss_dssp EEEEC--S-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred eeecC--C-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEccc
Confidence 33322 2 2378899999999998888 579999995 445543 333333 2445667776643
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.84 E-value=2.4e-19 Score=233.54 Aligned_cols=286 Identities=13% Similarity=0.038 Sum_probs=196.1
Q ss_pred ceeEEEEeCCCCEEEEEeCC---------CeEEEEECCCCceEEEee---CCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLD---------GKLIIWDTWTGNKTQVIP---LRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~D---------GtIrVWDl~Tgk~l~ti~---~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
.|.+++|||||++|++++.+ +.+++||+.+++. ..+. .|...+..++|+|||+.|+.++. +.|++|
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence 57899999999999999874 7889999998876 3333 34445889999999999999886 789999
Q ss_pred EcCCCCCCCcceEEEEEecCcc------------------ceeeeEEeCCCc-EEEeecCC-------------------
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEG------------------FLSSCRFIDDTT-LLTGSGDM------------------- 1803 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~------------------~Vssvafsdd~~-LlSgS~DG------------------- 1803 (2004)
++.++.. ......+.. .+..+.|++++. +++++.++
T Consensus 140 ~~~~g~~------~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (723)
T 1xfd_A 140 AHVGKQA------IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV 213 (723)
T ss_dssp SSSSSCC------EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred ECCCCce------EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcc
Confidence 9976531 122222222 236788987654 66665432
Q ss_pred ---------------eEEEEECCCCceeEEeecc-----ccCCeEEEEECCCCCEEEEEECC----CeEEEEECCCCeEE
Q psy8748 1804 ---------------KIVTWNLETGQRIHEVAQA-----HIGDVVSISLSPDGQYFVTGSVD----KSCKLWDFREKKCV 1859 (2004)
Q Consensus 1804 ---------------tI~IWDl~tg~~i~~il~~-----h~~~ItsLafSPdg~~LaSGS~D----GsIrIWDlrs~k~I 1859 (2004)
.|++||+.+++....+... +...+.+++|+|||+++++.... +.|++||+.+++..
T Consensus 214 ~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~ 293 (723)
T 1xfd_A 214 KPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT 293 (723)
T ss_dssp EEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred eeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce
Confidence 8999999988754333211 25678999999999988776533 57999999998876
Q ss_pred EEEec-CCCCe----EEEEEeCCCCEEEE--EECCC------eEEEEE-ccCCce--eEEEcCCCCCCCeEE-EEEcCCC
Q psy8748 1860 QTFFG-HEADV----NSVCFHPSGLAFAT--GSEDK------TARLFD-IRADQQ--IATYLPPNKNSGFTS-CAVSSSG 1922 (2004)
Q Consensus 1860 ~tl~~-h~s~I----tsIafSPdg~~LaS--gS~DG------tIrIWD-Lrtgk~--i~t~~~~~~~s~Its-LafSPdG 1922 (2004)
..+.. +...+ ..++|+|||+.|+. +..+| .|.+|| ..++.. ...+. .....+.. ++|+|+|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~~~~~~~~~~spdg 371 (723)
T 1xfd_A 294 KKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGDWDVTKILAYDEKG 371 (723)
T ss_dssp EEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSSSCEEEEEEEETTT
T ss_pred EEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCCeEEEeeeEEcCCC
Confidence 65543 33444 37899999997665 45677 567777 344431 33332 22233444 6999999
Q ss_pred CEEEEEeCC---CeEEEEECCCCe--eeEEEcc---CCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEE
Q psy8748 1923 RYIFCGSDD---NNVHVWDLLKTT--HNGVLSG---HENRVTSISLSPNGMALVTSSWD-Q--FVKVWQESNTIVWKV 1989 (2004)
Q Consensus 1923 ~~LaSGSsD---GsIrIWDL~tge--~l~tL~g---Hs~~VtsLaFSPDg~~LaSgS~D-G--tIrIWdlstg~l~k~ 1989 (2004)
+.|+..+.+ +.+++|++.... ....+.. |...+..++|+|||++++..... + ...+++..++.....
T Consensus 372 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 449 (723)
T 1xfd_A 372 NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD 449 (723)
T ss_dssp TEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEE
T ss_pred CEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEE
Confidence 999866655 789999986432 3333443 67779999999999988775432 2 344566655544333
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.83 E-value=1.1e-17 Score=196.85 Aligned_cols=227 Identities=14% Similarity=0.134 Sum_probs=179.1
Q ss_pred eeEEEEeCCCCEEEE-EeCCCeEEEEECCCCceEEEeeCCCCc---------eEEEEEecCCCEEEEee--cCCeEEEEE
Q psy8748 1695 VNSVHYSGDSRHCVS-GSLDGKLIIWDTWTGNKTQVIPLRSAW---------VMSVAFAQSGNFVACGG--MDNMCTVYD 1762 (2004)
Q Consensus 1695 VtsLaFSPDG~~LAS-GS~DGtIrVWDl~Tgk~l~ti~~Ht~~---------ItsLafSPdg~~LaSGS--~DGtIrVWD 1762 (2004)
+.+++|+|+|++++. +..++.|.+||..+++....+..+... +.+++|+|+++.+++++ .++.|.+||
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 457899999996554 555799999999999998888765432 78999999999877776 478999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeec---cccCCeEEEEECCCCCE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQ---AHIGDVVSISLSPDGQY 1838 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~---~h~~~ItsLafSPdg~~ 1838 (2004)
..++ +....+..+...+..+.++++ +.+++++.++.|.+||..+++....... ++...+.+++|+|++++
T Consensus 171 ~~~~------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 244 (353)
T 3vgz_A 171 GGNI------KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQR 244 (353)
T ss_dssp TTTT------EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTE
T ss_pred CCCC------ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCE
Confidence 9754 444455445556778888855 5688888899999999999987765533 24556888999999998
Q ss_pred EEEEECC-CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1839 FVTGSVD-KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1839 LaSGS~D-GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
+++++.+ +.|.+||..+++.+..+.... ..+++|+|+|+++++++ .++.|.+||..+++....+... ..+..+
T Consensus 245 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~ 319 (353)
T 3vgz_A 245 AFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP---THPNSL 319 (353)
T ss_dssp EEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC---SEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC---CCCCeE
Confidence 8777654 899999999998887776543 36799999999766665 6899999999999888777432 357899
Q ss_pred EEcCCCCEEEEEeCCC
Q psy8748 1917 AVSSSGRYIFCGSDDN 1932 (2004)
Q Consensus 1917 afSPdG~~LaSGSsDG 1932 (2004)
+|+|+|++++++..++
T Consensus 320 ~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 320 ALSADGKTLYVSVKQK 335 (353)
T ss_dssp EECTTSCEEEEEEECC
T ss_pred EEcCCCCEEEEEEccc
Confidence 9999999888776654
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=6.5e-19 Score=199.65 Aligned_cols=253 Identities=14% Similarity=0.135 Sum_probs=190.1
Q ss_pred EEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC-CCCCCcceEEEEEecC-cccee
Q psy8748 1709 SGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN-RDSTGAAKVIRELLGY-EGFLS 1786 (2004)
Q Consensus 1709 SGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t-~~~~~~~k~i~sl~gh-~~~Vs 1786 (2004)
.++.|+.|++||+.+++... +..|...|.+++|+|+++++++++ ++.|.+||+.+ +. .......+ ...+.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~------~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS------PEKVDTGFATICNN 88 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS------CEECCCTTCCCBCS
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC------ceEecccccccccc
Confidence 34578999999998887664 445788999999999999999986 78999999976 43 12222333 36778
Q ss_pred eeEEeCCCc-EEEee--c--CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE-EEECCCeEEEEECC-CCeEE
Q psy8748 1787 SCRFIDDTT-LLTGS--G--DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV-TGSVDKSCKLWDFR-EKKCV 1859 (2004)
Q Consensus 1787 svafsdd~~-LlSgS--~--DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La-SGS~DGsIrIWDlr-s~k~I 1859 (2004)
++.|++++. +++++ . ...|..|+..++... .+ . +...+.+++|+|++++++ +++.++.+++|+++ .....
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~-~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-LM-T-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-EC-C-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-Ee-e-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc
Confidence 899986654 66666 2 345556666655532 22 2 233588999999999877 77789999999853 22334
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEcc-CCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC------
Q psy8748 1860 QTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIR-ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD------ 1931 (2004)
Q Consensus 1860 ~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLr-tgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD------ 1931 (2004)
..+..+...+.+++|+|+++++++++ .++.+++|++. .+.....+. .+...+..++|+|+|++|++++.+
T Consensus 166 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 166 TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 56667888999999999999888766 58999999986 444554442 344678899999999999988765
Q ss_pred -----CeEEEEECCCCeee--EEEccCCCCeEEEEEcCCCCEEEEEECCC
Q psy8748 1932 -----NNVHVWDLLKTTHN--GVLSGHENRVTSISLSPNGMALVTSSWDQ 1974 (2004)
Q Consensus 1932 -----GsIrIWDL~tge~l--~tL~gHs~~VtsLaFSPDg~~LaSgS~DG 1974 (2004)
+.|++||+.+++.. ..+.+|...+.+++|+|++++|++++.|.
T Consensus 244 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 56999999887653 44457888999999999999998887664
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.82 E-value=1.4e-19 Score=235.75 Aligned_cols=282 Identities=12% Similarity=0.089 Sum_probs=206.5
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCC---ceEEEEEecCCCEEEEeecC---------CeEEEE
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSA---WVMSVAFAQSGNFVACGGMD---------NMCTVY 1761 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~---~ItsLafSPdg~~LaSGS~D---------GtIrVW 1761 (2004)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999997776 7899999999999998888877765 49999999999999998764 788899
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEeecCCeEEEEECCCCceeEEeeccccCC--------------
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGD-------------- 1826 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~-------------- 1826 (2004)
|+.++.. ..+....++...+..+.|++++. ++.++ ++.|++||..+++..... ..+...
T Consensus 97 d~~~~~~----~~l~~~~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 97 KIPHGDP----QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp ESSSCCC----EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHHHHT
T ss_pred ECCCCce----EeccCCccccccccccEECCCCCEEEEEE-CCeEEEEECCCCceEEEe-cCCCCCceECcccceeEEEE
Confidence 9987531 22222233444578899997765 55544 589999999988765333 332322
Q ss_pred ----eEEEEECCCCCEEEEEECCC----------------------------------eEEEEECCCCeEEEEEecC---
Q psy8748 1827 ----VVSISLSPDGQYFVTGSVDK----------------------------------SCKLWDFREKKCVQTFFGH--- 1865 (2004)
Q Consensus 1827 ----ItsLafSPdg~~LaSGS~DG----------------------------------sIrIWDlrs~k~I~tl~~h--- 1865 (2004)
+.+++|+|||++|++++.|+ .|++||+.+++....+..+
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence 37899999999999987553 7999999988765555543
Q ss_pred ---CCCeEEEEEeCCCCEEEEEECC----CeEEEEEccCCceeEEEcCCCCCCCe----EEEEEcCCCCEEEE--EeCCC
Q psy8748 1866 ---EADVNSVCFHPSGLAFATGSED----KTARLFDIRADQQIATYLPPNKNSGF----TSCAVSSSGRYIFC--GSDDN 1932 (2004)
Q Consensus 1866 ---~s~ItsIafSPdg~~LaSgS~D----GtIrIWDLrtgk~i~t~~~~~~~s~I----tsLafSPdG~~LaS--GSsDG 1932 (2004)
...+.+++|+|||+++++++.. +.|++||+.+++........ +...+ ..++|+|||+.|+. +..+|
T Consensus 251 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 5678999999999988776533 57999999988866554221 11222 36799999997775 45677
Q ss_pred ------eEEEEE-CCCCe--eeEEEccCCCCeEE-EEEcCCCCEEEEEECC---CeEEEEECCC
Q psy8748 1933 ------NVHVWD-LLKTT--HNGVLSGHENRVTS-ISLSPNGMALVTSSWD---QFVKVWQESN 1983 (2004)
Q Consensus 1933 ------sIrIWD-L~tge--~l~tL~gHs~~Vts-LaFSPDg~~LaSgS~D---GtIrIWdlst 1983 (2004)
.|++|| ...+. +...+..+...+.. ++|+|||+.|+..+.+ +.+++|+++.
T Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred CCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 577777 34443 14455444445555 6999999999877665 7899999864
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.82 E-value=2.2e-17 Score=193.59 Aligned_cols=242 Identities=10% Similarity=0.096 Sum_probs=176.9
Q ss_pred cceeEEEEeCCCCEEEEEeC-CCeEEEEECCCCce-EEEeeCCCCceEEEEEecCCCEEEEeecCC---eEEEEEcCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSL-DGKLIIWDTWTGNK-TQVIPLRSAWVMSVAFAQSGNFVACGGMDN---MCTVYDLNNRD 1767 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~-DGtIrVWDl~Tgk~-l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG---tIrVWDl~t~~ 1767 (2004)
..+ +++|+|+|+++++++. ++.|++||..+++. ...+..+..+..+++|+|++++++++..++ .|.+||+.++
T Consensus 41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~- 118 (331)
T 3u4y_A 41 DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN- 118 (331)
T ss_dssp CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT-
T ss_pred Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC-
Confidence 445 8999999997776665 89999999999987 777777777666699999999999666553 8999999764
Q ss_pred CCCcceEEEEEecCccceeeeEEeCCC-cEEEe-ecCCe-EEEEECCCCceeEEe---eccccCCeEEEEECCCCCEEEE
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRFIDDT-TLLTG-SGDMK-IVTWNLETGQRIHEV---AQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSg-S~DGt-I~IWDl~tg~~i~~i---l~~h~~~ItsLafSPdg~~LaS 1841 (2004)
+....+.. .....++.|++++ .++++ ..++. |.+|++.....+... .........+++|+|+|+++++
T Consensus 119 -----~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 119 -----KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp -----EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred -----CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence 23333333 3445788898765 35554 55578 999999864433111 1133456899999999997666
Q ss_pred EE-CCCeEEEEECCCCeE---EEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCce--eEEEcCC--CCC--
Q psy8748 1842 GS-VDKSCKLWDFREKKC---VQTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQ--IATYLPP--NKN-- 1910 (2004)
Q Consensus 1842 GS-~DGsIrIWDlrs~k~---I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~--i~t~~~~--~~~-- 1910 (2004)
++ .++.|.+||+.+++. +..+.. ...+.+++|+|+|+++++++ .++.|.+||..+++. +..+... ...
T Consensus 193 ~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 271 (331)
T 3u4y_A 193 ANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRP 271 (331)
T ss_dssp EETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGG
T ss_pred EeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCC
Confidence 55 688999999998887 766654 46778999999999777665 477899999998876 3333211 111
Q ss_pred -CCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCe
Q psy8748 1911 -SGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTT 1943 (2004)
Q Consensus 1911 -s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge 1943 (2004)
.....++|+|+|+++++++. ++.|.+||+....
T Consensus 272 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 272 LFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp GTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred cccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 12355899999998876655 5699999997654
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.81 E-value=3e-18 Score=223.20 Aligned_cols=277 Identities=15% Similarity=0.142 Sum_probs=190.6
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCC-----CceEEEeeCCCCc--------------eEEEEEecCCCEEEEe
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT-----GNKTQVIPLRSAW--------------VMSVAFAQSGNFVACG 1752 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T-----gk~l~ti~~Ht~~--------------ItsLafSPdg~~LaSG 1752 (2004)
.+.+.+++|||||++|+++ .|+.|++||+.+ ++.......+... +.++.|+|||++|+++
T Consensus 120 ~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~ 198 (706)
T 2z3z_A 120 NEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY 198 (706)
T ss_dssp TTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE
T ss_pred cccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE
Confidence 3456778999999999985 679999999998 7766544444333 4889999999999998
Q ss_pred e---------------------------------cCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEE
Q psy8748 1753 G---------------------------------MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLT 1798 (2004)
Q Consensus 1753 S---------------------------------~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlS 1798 (2004)
+ .++.|.+||+.++.. ........+...+..+.|++++. +++
T Consensus 199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~ 274 (706)
T 2z3z_A 199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT----VYLQTGEPKEKFLTNLSWSPDENILYV 274 (706)
T ss_dssp EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE----EECCCCSCTTCEEEEEEECTTSSEEEE
T ss_pred EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce----EeeccCCCCceeEeeEEEECCCCEEEE
Confidence 7 447899999976421 11111124567788999997665 777
Q ss_pred eecCC-----eEEEEECCCCceeEEeecc-ccC---CeEEEEECC--CCCEEEEEECCCeEEEEECC-CCeEEEEEecCC
Q psy8748 1799 GSGDM-----KIVTWNLETGQRIHEVAQA-HIG---DVVSISLSP--DGQYFVTGSVDKSCKLWDFR-EKKCVQTFFGHE 1866 (2004)
Q Consensus 1799 gS~DG-----tI~IWDl~tg~~i~~il~~-h~~---~ItsLafSP--dg~~LaSGS~DGsIrIWDlr-s~k~I~tl~~h~ 1866 (2004)
++.++ .|++||..+++....+... +.. .+.+++|+| +|+++++++.||.+++|+++ ++..+..+..+.
T Consensus 275 ~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~ 354 (706)
T 2z3z_A 275 AEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE 354 (706)
T ss_dssp EEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred EEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCC
Confidence 66665 8999999998444333322 222 246789999 99999999999999999876 667777787777
Q ss_pred CCeEE-EEEeCCCCEEEEEECC-C----eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC----CeEEE
Q psy8748 1867 ADVNS-VCFHPSGLAFATGSED-K----TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD----NNVHV 1936 (2004)
Q Consensus 1867 s~Its-IafSPdg~~LaSgS~D-G----tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD----GsIrI 1936 (2004)
..+.+ ++|+|+|+.+++++.+ + .|..||..+++ ...+. +...+..++|+|+|++++.++.+ +.|++
T Consensus 355 ~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l 430 (706)
T 2z3z_A 355 WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTV 430 (706)
T ss_dssp SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEE
T ss_pred eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEE
Confidence 77877 7999999987766554 3 67777777665 33332 34568899999999998876543 56999
Q ss_pred EECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCC--eEEEEE
Q psy8748 1937 WDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQ--FVKVWQ 1980 (2004)
Q Consensus 1937 WDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DG--tIrIWd 1980 (2004)
||+.+++ ...+ .+...+....+.+.. .+..-+.|| .+..|-
T Consensus 431 ~d~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~ 473 (706)
T 2z3z_A 431 TNIGKGS-HTLL-EAKNPDTGYAMPEIR-TGTIMAADGQTPLYYKL 473 (706)
T ss_dssp EESSSCE-EEEE-ECC------CCCCEE-EEEEECTTSSSEEEEEE
T ss_pred EECCCCe-Eeec-cccchhhhcCCCCcE-EEEEEcCCCCEEEEEEE
Confidence 9998887 3333 334444444443322 233334455 555554
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=1.7e-18 Score=221.24 Aligned_cols=271 Identities=11% Similarity=0.081 Sum_probs=199.5
Q ss_pred ccceeEEEEeCCCCEEEEEeC-CCeEEEEECCCCceEEEeeCCC-CceEEEEEecCCCEEEEeec---CCeEEEEEcCCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSL-DGKLIIWDTWTGNKTQVIPLRS-AWVMSVAFAQSGNFVACGGM---DNMCTVYDLNNR 1766 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~-DGtIrVWDl~Tgk~l~ti~~Ht-~~ItsLafSPdg~~LaSGS~---DGtIrVWDl~t~ 1766 (2004)
..+|++++|+|||++||+++. ||+++||++.+++.. .+..+. ..+.++.|+|| +.+++++. +....+|.++..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 999999998655544 444444 68999999999 77777665 455677766541
Q ss_pred CCCCcceEEEEEecCccceeeeEEe--CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV 1844 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~ 1844 (2004)
+.. ... .+.... ......|+ .+..+++.+.++.+.+||+.+++... +.. +.. .+++|+|||+++++++.
T Consensus 99 ~~g-~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-l~~-~~~--~~~~~spDG~~la~~~~ 169 (582)
T 3o4h_A 99 RPG-EEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE-LAR-LPG--FGFVSDIRGDLIAGLGF 169 (582)
T ss_dssp STT-CCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-EEE-ESS--CEEEEEEETTEEEEEEE
T ss_pred CCC-ccc---cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-eec-CCC--ceEEECCCCCEEEEEEE
Confidence 100 111 121111 12233444 33445666666666699999886543 322 222 78999999999998887
Q ss_pred C----CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC--eEEEEEccCCceeEEEcCCCCCCCeEEEE-
Q psy8748 1845 D----KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK--TARLFDIRADQQIATYLPPNKNSGFTSCA- 1917 (2004)
Q Consensus 1845 D----GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG--tIrIWDLrtgk~i~t~~~~~~~s~ItsLa- 1917 (2004)
+ +.|++||+.+++.. .+..|...+..++|+|||+.|+++..+| .|++||+.+++.. .. ..+...+..++
T Consensus 170 ~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~--~~~~~~~~~~~~ 245 (582)
T 3o4h_A 170 FGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL--ELPSKDFSSYRP 245 (582)
T ss_dssp EETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC--CCSCSHHHHHCC
T ss_pred cCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec--cCCCcChhhhhh
Confidence 7 78999999888754 6678888899999999999999888888 8999999988776 33 33444455555
Q ss_pred -------EcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCe---EEEEECCC
Q psy8748 1918 -------VSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQF---VKVWQESN 1983 (2004)
Q Consensus 1918 -------fSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGt---IrIWdlst 1983 (2004)
|+|||.++++++.||.+++|++ ++... .+.+.|.+++|+ +++++++++.+.. +.+|+..+
T Consensus 246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp SEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred ccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999999999999999999999 66554 345779999999 9999999887744 66666554
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=6.9e-17 Score=191.51 Aligned_cols=271 Identities=8% Similarity=0.077 Sum_probs=186.2
Q ss_pred CCeEEEEEC--CCCceEE-EeeCCCCceEEEEEecCCCEEEEeec---CCeEEEEEcCCCCCCCcceEEEEEecCcccee
Q psy8748 1713 DGKLIIWDT--WTGNKTQ-VIPLRSAWVMSVAFAQSGNFVACGGM---DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786 (2004)
Q Consensus 1713 DGtIrVWDl--~Tgk~l~-ti~~Ht~~ItsLafSPdg~~LaSGS~---DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vs 1786 (2004)
++.|.+|++ .+++... ....+...+..++|+|+|+ +++++. ++.|.+|++..+ ..........+...+.
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g----~~~~~~~~~~~~~~p~ 89 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ----TAHKLNTVVAPGTPPA 89 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT----EEEEEEEEEEESCCCS
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC----cEEEeeeeecCCCCCE
Confidence 456777755 4565433 2233456678899999999 555544 689999999654 2334444455667788
Q ss_pred eeEEeCCCc-EEEee-cCCeEEEEECCC-Cce--eEEeecc--------ccCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1787 SCRFIDDTT-LLTGS-GDMKIVTWNLET-GQR--IHEVAQA--------HIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1787 svafsdd~~-LlSgS-~DGtI~IWDl~t-g~~--i~~il~~--------h~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
.+++++++. +++++ .++.|.+||+.. +.. +...... ....+.+++|+|+|+.+++...++.|++||+
T Consensus 90 ~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 90 YVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEE
Confidence 889987654 66666 679999999963 322 2122111 1224889999999996666666889999999
Q ss_pred C-CCeEE--EEEec-CCCCeEEEEEeCCCCEEEE-EECCCeEEEEEccC--Ccee--EEEcCCCC----CCCeEEEEEcC
Q psy8748 1854 R-EKKCV--QTFFG-HEADVNSVCFHPSGLAFAT-GSEDKTARLFDIRA--DQQI--ATYLPPNK----NSGFTSCAVSS 1920 (2004)
Q Consensus 1854 r-s~k~I--~tl~~-h~s~ItsIafSPdg~~LaS-gS~DGtIrIWDLrt--gk~i--~t~~~~~~----~s~ItsLafSP 1920 (2004)
. +++.. ..+.. ....+..++|+|+|+++++ +..++.|.+|++.. ++.. ........ ...+..++|+|
T Consensus 170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 8 45432 22222 2346788999999997666 45678999999874 4432 22211111 13578899999
Q ss_pred CCCEEE-EEeCCCeEEEEECC---CCeeeEEEccCCCCeEEEEEcCCCCEEEEEECC-CeEEEEEC--CCCeEEE
Q psy8748 1921 SGRYIF-CGSDDNNVHVWDLL---KTTHNGVLSGHENRVTSISLSPNGMALVTSSWD-QFVKVWQE--SNTIVWK 1988 (2004)
Q Consensus 1921 dG~~La-SGSsDGsIrIWDL~---tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D-GtIrIWdl--stg~l~k 1988 (2004)
+|++|+ ++..++.|.+|++. ..+.+..+..+...+.+++|+|||++|++++.+ +.|.+|++ .+++...
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 999885 45568999999997 335566666677778999999999999888765 89999954 5665443
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.80 E-value=1.8e-17 Score=192.87 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=183.0
Q ss_pred eeEEEEeCCCCEEE-EEeCCCeEEEEECCCCceEEEeeCCC-----CceEEEEEecCCCEEEEee------------cCC
Q psy8748 1695 VNSVHYSGDSRHCV-SGSLDGKLIIWDTWTGNKTQVIPLRS-----AWVMSVAFAQSGNFVACGG------------MDN 1756 (2004)
Q Consensus 1695 VtsLaFSPDG~~LA-SGS~DGtIrVWDl~Tgk~l~ti~~Ht-----~~ItsLafSPdg~~LaSGS------------~DG 1756 (2004)
+.+++|+|+|++++ +++.++.|.+||+.+++....+.... ..+.+++|+|+|+++++++ .++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence 56799999998764 55567899999999999887776421 2577899999999988886 579
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEeecCCeEEEEECCCCceeEEeeccc-cCCeEEEEECC
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGSGDMKIVTWNLETGQRIHEVAQAH-IGDVVSISLSP 1834 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h-~~~ItsLafSP 1834 (2004)
.|.+||+.++ +....+.. ...+..+.|++++. ++++ ++.|++||+.+++....+.... .. .+.|+|
T Consensus 116 ~i~v~d~~~~------~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~s~ 183 (337)
T 1pby_B 116 RVALYDAETL------SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEA---ETYAQP 183 (337)
T ss_dssp EEEEEETTTT------EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTT---TTBCCC
T ss_pred eEEEEECCCC------cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCC---CceeCC
Confidence 9999999754 23333333 34567788886654 6665 6899999999988765543222 12 237889
Q ss_pred CCCEEEEEECCC------------------------eEEEEECCCCeEE-EEEecCCCCeEEEEEeCCCCEEEEEECCCe
Q psy8748 1835 DGQYFVTGSVDK------------------------SCKLWDFREKKCV-QTFFGHEADVNSVCFHPSGLAFATGSEDKT 1889 (2004)
Q Consensus 1835 dg~~LaSGS~DG------------------------sIrIWDlrs~k~I-~tl~~h~s~ItsIafSPdg~~LaSgS~DGt 1889 (2004)
+++.+++++.++ .|.+||..+++.. ..+..+...+.+++|+|+|++++++ ++.
T Consensus 184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~ 261 (337)
T 1pby_B 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV 261 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE
T ss_pred CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe
Confidence 888766554332 4789999988764 2334566678899999999999888 799
Q ss_pred EEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC
Q psy8748 1890 ARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH 1951 (2004)
Q Consensus 1890 IrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH 1951 (2004)
|.+||+.+++....+... ..+.+++|+|+|+++++++.++.|++||+.+++.+..+..+
T Consensus 262 v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 262 LESFDLEKNASIKRVPLP---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEEETTTTEEEEEEECS---SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred EEEEECCCCcCcceecCC---CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 999999998887776432 35678999999999999999999999999999988877644
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=6.8e-17 Score=192.94 Aligned_cols=279 Identities=11% Similarity=0.163 Sum_probs=193.4
Q ss_pred CCEEEEEe----CCCeEEEEEC--CCCceEEEeeCCCCceEEEEEecCCCEEEEeecC----CeEEEEEcCCCCCCCcce
Q psy8748 1704 SRHCVSGS----LDGKLIIWDT--WTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD----NMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1704 G~~LASGS----~DGtIrVWDl--~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D----GtIrVWDl~t~~~~~~~k 1773 (2004)
..+++.|+ .++.|.+|++ .+++.......+...+..++|+|+|++|++++.+ |.|.+|+++... ....
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~--g~~~ 90 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK--GTLH 90 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT--TEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC--CcEE
Confidence 34555554 3568999865 5565543332266778889999999999998875 799999987531 1233
Q ss_pred EEEEEecCccceeeeEEeCCCcEEEee-cCCeEEEEECCCCceeEEee-----c--------cccCCeEEEEECCCCCEE
Q psy8748 1774 VIRELLGYEGFLSSCRFIDDTTLLTGS-GDMKIVTWNLETGQRIHEVA-----Q--------AHIGDVVSISLSPDGQYF 1839 (2004)
Q Consensus 1774 ~i~sl~gh~~~Vssvafsdd~~LlSgS-~DGtI~IWDl~tg~~i~~il-----~--------~h~~~ItsLafSPdg~~L 1839 (2004)
.+.....+......+++ ++..+++++ .++.|.+|++.....+.... . .+...+.+++|+|+|+++
T Consensus 91 ~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred EeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 44444445556666777 666666655 68899999997544321110 0 112345889999999977
Q ss_pred EEEEC-CCeEEEEECCCCe-------E------EEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCcee--E
Q psy8748 1840 VTGSV-DKSCKLWDFREKK-------C------VQTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQI--A 1902 (2004)
Q Consensus 1840 aSGS~-DGsIrIWDlrs~k-------~------I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i--~ 1902 (2004)
++++. ++.|.+|++.... . ......+...+.+++|+|+|+++++++ .++.|.+||+.+++.. .
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~ 249 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ 249 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence 76664 7899999887433 1 122234456688999999999888777 5899999999876542 2
Q ss_pred EEc-CCCCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECC--CCe--eeEEEccCCCCeEEEEEcCCCCEEEEEE-CCC
Q psy8748 1903 TYL-PPNKNSGFTSCAVSSSGRYIFCGSDD--NNVHVWDLL--KTT--HNGVLSGHENRVTSISLSPNGMALVTSS-WDQ 1974 (2004)
Q Consensus 1903 t~~-~~~~~s~ItsLafSPdG~~LaSGSsD--GsIrIWDL~--tge--~l~tL~gHs~~VtsLaFSPDg~~LaSgS-~DG 1974 (2004)
... ...+......++|+|||++|++++.+ +.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .++
T Consensus 250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence 221 22333456899999999999777664 899999985 444 4444444 56788999999999998888 679
Q ss_pred eEEEEECC--CCeE
Q psy8748 1975 FVKVWQES--NTIV 1986 (2004)
Q Consensus 1975 tIrIWdls--tg~l 1986 (2004)
.|.+|+++ +++.
T Consensus 329 ~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 329 VIQIFERDQATGLL 342 (361)
T ss_dssp EEEEEEECTTTCCE
T ss_pred CEEEEEEECCCCcE
Confidence 99997654 6654
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.79 E-value=3.6e-18 Score=193.59 Aligned_cols=240 Identities=14% Similarity=0.060 Sum_probs=181.2
Q ss_pred ccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC-CceEEEeeCC-CCceEEEEEecCCCEEEEee--cCCeEEEE
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT-GNKTQVIPLR-SAWVMSVAFAQSGNFVACGG--MDNMCTVY 1761 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T-gk~l~ti~~H-t~~ItsLafSPdg~~LaSGS--~DGtIrVW 1761 (2004)
..+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|+++++++++ .++...+|
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY 113 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence 35667899999999999999999987 78999999999 8777666665 46789999999999999998 44566666
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EE-EeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYF 1839 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-Ll-SgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~L 1839 (2004)
.++... .....+..+ ..+..+.|++++. ++ ++..++.+.+|+++...........+...+.+++|+|+++++
T Consensus 114 ~~~~~~-----~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 187 (297)
T 2ojh_A 114 LLPSTG-----GTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWI 187 (297)
T ss_dssp EEETTC-----CCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEE
T ss_pred EEECCC-----CceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEE
Confidence 654321 112222222 3477788886654 44 677899999998643222223345677889999999999988
Q ss_pred EEEE-CCCeEEEEECC-CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC-----------CeEEEEEccCCceeEEEcC
Q psy8748 1840 VTGS-VDKSCKLWDFR-EKKCVQTFFGHEADVNSVCFHPSGLAFATGSED-----------KTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1840 aSGS-~DGsIrIWDlr-s~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D-----------GtIrIWDLrtgk~i~t~~~ 1906 (2004)
++++ .++.+++|+++ .+.....+..+...+.+++|+|+|++|++++.+ +.|.+||+.+++.......
T Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 267 (297)
T 2ojh_A 188 YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL 267 (297)
T ss_dssp EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence 8776 58899999886 555667777888889999999999999888765 5699999998776444432
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCC
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGSDDN 1932 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGSsDG 1932 (2004)
..+...+.+++|+|+|++|++++.+.
T Consensus 268 ~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 268 FGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCCcccccceECCCCCEEEEEEecc
Confidence 34456788899999999998887653
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.78 E-value=7.7e-17 Score=188.92 Aligned_cols=273 Identities=9% Similarity=-0.001 Sum_probs=195.8
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCC-CceEEEEEecCCCEEE-EeecCCeEEEEEcCCCCCCCcceE
Q psy8748 1697 SVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS-AWVMSVAFAQSGNFVA-CGGMDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht-~~ItsLafSPdg~~La-SGS~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
.+++++++.++++++.++.|++||..+++....+..+. ..+..++|+|+++.++ ++..++.|.+||+.++ +.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~------~~ 77 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC------KN 77 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT------EE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC------cE
Confidence 45677888999999999999999999999888887554 2578999999998654 5567899999999764 22
Q ss_pred EEEEec-C-----ccceeeeEEeCCC-cEEEeecC------------CeEEEEECCCCceeEEe-eccccCCeEEEEECC
Q psy8748 1775 IRELLG-Y-----EGFLSSCRFIDDT-TLLTGSGD------------MKIVTWNLETGQRIHEV-AQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1775 i~sl~g-h-----~~~Vssvafsdd~-~LlSgS~D------------GtI~IWDl~tg~~i~~i-l~~h~~~ItsLafSP 1834 (2004)
...... + ...+..+.|++++ .+++++.+ +.|.+||+.+++..... ...+...+.+++|+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD 157 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC
Confidence 333322 1 2336778888655 56666654 89999999885433211 112344688999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecCCC------------------------CeEEEEEeCCCCE----------
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA------------------------DVNSVCFHPSGLA---------- 1880 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s------------------------~ItsIafSPdg~~---------- 1880 (2004)
+|+ +++++ +.|++||..+++.+..+..+.. ...++++++++..
T Consensus 158 dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 158 DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999 66654 4599999999988777653320 2345666654421
Q ss_pred -EEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEE
Q psy8748 1881 -FATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS-SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSI 1958 (2004)
Q Consensus 1881 -LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP-dG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsL 1958 (2004)
+.....++.+++|++. .....+..++|+| +|++++++ ++.|++||+.+++....+.. ...+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~ 300 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFA-----------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCV 300 (349)
T ss_dssp EEEEETTTCCEEEEEEE-----------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEE
T ss_pred EEEEeccCCcEEecccc-----------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccce
Confidence 1122233444444432 1335678999999 99999988 88999999999998887763 3457899
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1959 SLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1959 aFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
+|+|+|++|++++.++.|++||..+++....++.
T Consensus 301 ~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 301 AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp EECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 9999999999888899999999999877666654
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.77 E-value=1.3e-16 Score=187.13 Aligned_cols=247 Identities=15% Similarity=0.067 Sum_probs=170.0
Q ss_pred ceeEEEEeCCCCEEE-EEeCCCeEEEEECCCCceEEEeeCCC------CceEEEEEecCCCEEEEeecC-----------
Q psy8748 1694 KVNSVHYSGDSRHCV-SGSLDGKLIIWDTWTGNKTQVIPLRS------AWVMSVAFAQSGNFVACGGMD----------- 1755 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LA-SGS~DGtIrVWDl~Tgk~l~ti~~Ht------~~ItsLafSPdg~~LaSGS~D----------- 1755 (2004)
.+..++|+|+|++++ ++..++.|.+||+.+++....+..+. ..+.+++|+|+|+++++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 356899999998665 55568999999999998887776433 237889999999999998865
Q ss_pred -CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccC---------
Q psy8748 1756 -NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIG--------- 1825 (2004)
Q Consensus 1756 -GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~--------- 1825 (2004)
+.|.+||+.++... ....... +...+.++.|++++.+++++. .|++||..+++....+.....+
T Consensus 124 ~~~i~~~d~~~~~~~---~~~~~~~-~~~~~~~~~~s~dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
T 1jmx_B 124 PPRLEVFSTADGLEA---KPVRTFP-MPRQVYLMRAADDGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDV 197 (349)
T ss_dssp CCEEEEEEGGGGGGB---CCSEEEE-CCSSCCCEEECTTSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBC
T ss_pred CCeEEEEECCCcccc---ceeeecc-CCCcccceeECCCCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccc
Confidence 89999999764321 1122222 233577888987766666543 4999999998876544222100
Q ss_pred --------------CeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeE-EEEEecCCCCeEEEEEeC-CCCEEEEEECCC
Q psy8748 1826 --------------DVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKC-VQTFFGHEADVNSVCFHP-SGLAFATGSEDK 1888 (2004)
Q Consensus 1826 --------------~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~-I~tl~~h~s~ItsIafSP-dg~~LaSgS~DG 1888 (2004)
...++++++++....... ....+..+|..+++. ...+..+...+.+++|+| ++++++++ ++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~ 275 (349)
T 1jmx_B 198 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN 275 (349)
T ss_dssp CCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES
T ss_pred eeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC
Confidence 234566665442110000 011122245544432 112233566788999999 99999888 88
Q ss_pred eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC
Q psy8748 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH 1951 (2004)
Q Consensus 1889 tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH 1951 (2004)
.|.+||+.+++....+... ..+.+++|+|+|++|++++.++.|++||+.+++.+..+...
T Consensus 276 ~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 276 RLAKYDLKQRKLIKAANLD---HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEEETTTTEEEEEEECS---SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred eEEEEECccCeEEEEEcCC---CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 9999999999887776432 34678999999999998888999999999999988877644
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.76 E-value=1.8e-17 Score=216.50 Aligned_cols=292 Identities=9% Similarity=0.029 Sum_probs=195.6
Q ss_pred ceeEEEEeCCCCEEEEEeC---------CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1694 KVNSVHYSGDSRHCVSGSL---------DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~---------DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
.|.+++|||||++|++++. ++.|++||+.+++.+.... ....+.+++|+|||+.|+.+. ++.|++|++.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4779999999999998876 7899999999887621111 135688999999999999885 7899999997
Q ss_pred CCCCCCcc---eEEEEEecCccc---------eeeeEEeCCC-cEEEeecCC----------------------------
Q psy8748 1765 NRDSTGAA---KVIRELLGYEGF---------LSSCRFIDDT-TLLTGSGDM---------------------------- 1803 (2004)
Q Consensus 1765 t~~~~~~~---k~i~sl~gh~~~---------Vssvafsdd~-~LlSgS~DG---------------------------- 1803 (2004)
++...... .......++... ...+.|++++ .+++++.|.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 65321000 000011122211 2478899765 466665442
Q ss_pred ------eEEEEECCCCcee--EEe-----eccccCCeEEEEECCCCCEEEEEECC----CeEEEEE----CCCCeEEEEE
Q psy8748 1804 ------KIVTWNLETGQRI--HEV-----AQAHIGDVVSISLSPDGQYFVTGSVD----KSCKLWD----FREKKCVQTF 1862 (2004)
Q Consensus 1804 ------tI~IWDl~tg~~i--~~i-----l~~h~~~ItsLafSPdg~~LaSGS~D----GsIrIWD----lrs~k~I~tl 1862 (2004)
.|++||+.+++.. ..+ +.+|...+.+++|+||++++++.... ..|.+|| ..+++....+
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 7899999987642 111 23567789999999998777664432 2488999 7777654444
Q ss_pred ----ecCCCCeE-----EEEEeCCCCEEEE--EECCC--eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1863 ----FGHEADVN-----SVCFHPSGLAFAT--GSEDK--TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1863 ----~~h~s~It-----sIafSPdg~~LaS--gS~DG--tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
.+|...+. .+.|+|||+.++. +..+| .|.+||+.+++ ...+. .+...+..+.++ +++.|+..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt--~~~~~v~~~~~~-d~~~i~~~~ 374 (719)
T 1z68_A 299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQIT--SGKWEAINIFRV-TQDSLFYSS 374 (719)
T ss_dssp EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECS--CSSSCEEEEEEE-CSSEEEEEE
T ss_pred ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecc--cCceEEEEEEEE-eCCEEEEEE
Confidence 35666666 8899999996554 44555 57777877665 33332 233457777777 888777766
Q ss_pred CC-----CeEEEEECCC--Ce-eeEEEc----cCCCCeEEEEEcCCCCEEEEE-ECC--CeEEEEECCCCeEEEEEE
Q psy8748 1930 DD-----NNVHVWDLLK--TT-HNGVLS----GHENRVTSISLSPNGMALVTS-SWD--QFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1930 sD-----GsIrIWDL~t--ge-~l~tL~----gHs~~VtsLaFSPDg~~LaSg-S~D--GtIrIWdlstg~l~k~Ik 1991 (2004)
.+ +..++|.+.. +. ....+. +|...+..+.|++++++++.. +.+ ..+.+|++.+++..+.+.
T Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 375 NEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred ecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 65 7888887753 32 123333 266778899999998877643 333 578999998886544444
No 155
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=1.1e-16 Score=191.99 Aligned_cols=289 Identities=12% Similarity=0.060 Sum_probs=198.6
Q ss_pred ccccccccccceeE-----EEEeCCCCEEEEEeC-CC--eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC
Q psy8748 1684 PKKSLKGHINKVNS-----VHYSGDSRHCVSGSL-DG--KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD 1755 (2004)
Q Consensus 1684 pi~sL~GHt~~Vts-----LaFSPDG~~LASGS~-DG--tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D 1755 (2004)
....+..|...... .+|||||++|+.++. +| .|.+||+.+++.......+...+....|+|||+.|+.++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 34556666665555 899999999998887 66 48899999998877777776666678899999999999999
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE--eCCCcEEE-----------------------eecCCeEEEEEC
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF--IDDTTLLT-----------------------GSGDMKIVTWNL 1810 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf--sdd~~LlS-----------------------gS~DGtI~IWDl 1810 (2004)
+.|++||+.+++ .......+...+....+ ++++.+++ ...++.|++||+
T Consensus 102 ~~l~~~d~~~g~------~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 175 (388)
T 3pe7_A 102 RNLMRVDLATLE------ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL 175 (388)
T ss_dssp TEEEEEETTTCC------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET
T ss_pred CeEEEEECCCCc------ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEEC
Confidence 999999998653 12222233333333333 44444443 224578999999
Q ss_pred CCCceeEEeeccccCCeEEEEECC-CCCEEEEEECC------CeEEEEECCCCeEEEEEecCC--CCeEEEEEeCCCCEE
Q psy8748 1811 ETGQRIHEVAQAHIGDVVSISLSP-DGQYFVTGSVD------KSCKLWDFREKKCVQTFFGHE--ADVNSVCFHPSGLAF 1881 (2004)
Q Consensus 1811 ~tg~~i~~il~~h~~~ItsLafSP-dg~~LaSGS~D------GsIrIWDlrs~k~I~tl~~h~--s~ItsIafSPdg~~L 1881 (2004)
.+++... + ..+...+..++|+| +|+.++.+..+ ..|.++|...+.. ..+..+. ..+...+|+|||+.|
T Consensus 176 ~~g~~~~-l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l 252 (388)
T 3pe7_A 176 KTGESTV-I-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSAL 252 (388)
T ss_dssp TTCCEEE-E-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCE
T ss_pred CCCceEE-e-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEE
Confidence 9887542 2 35566789999999 99998887754 3788888876543 3443443 357788999999977
Q ss_pred EEEEC-CC----eEEEEEccCCceeEEEcCCCCCC---CeEEEEEcCCCCEEEEE---------eCCCeEEEEECCCCee
Q psy8748 1882 ATGSE-DK----TARLFDIRADQQIATYLPPNKNS---GFTSCAVSSSGRYIFCG---------SDDNNVHVWDLLKTTH 1944 (2004)
Q Consensus 1882 aSgS~-DG----tIrIWDLrtgk~i~t~~~~~~~s---~ItsLafSPdG~~LaSG---------SsDGsIrIWDL~tge~ 1944 (2004)
+..+. ++ .|++||+.+++............ ......|+|||+.|+.. ..++.|++||+.+++.
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 253 VYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp EEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred EEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 65443 22 39999999887533222121000 01113699999988854 4567899999988765
Q ss_pred eEEEccCCC-----------CeEEEEEcCCCCEEEEEE-CCCeEEEEECC
Q psy8748 1945 NGVLSGHEN-----------RVTSISLSPNGMALVTSS-WDQFVKVWQES 1982 (2004)
Q Consensus 1945 l~tL~gHs~-----------~VtsLaFSPDg~~LaSgS-~DGtIrIWdls 1982 (2004)
..+..|.. .+.+++|+|||+.|+.++ .+|...+|.++
T Consensus 333 -~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 333 -HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp -EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred -EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 44545555 578899999999888766 46777777554
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.74 E-value=1.5e-15 Score=181.41 Aligned_cols=266 Identities=12% Similarity=0.166 Sum_probs=184.4
Q ss_pred cccceeEEEEeCCCCEEEEEeCC----CeEEEEECCC--Cce--EEEeeCCCCceEEEEEecCCCEEEEee-cCCeEEEE
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLD----GKLIIWDTWT--GNK--TQVIPLRSAWVMSVAFAQSGNFVACGG-MDNMCTVY 1761 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~D----GtIrVWDl~T--gk~--l~ti~~Ht~~ItsLafSPdg~~LaSGS-~DGtIrVW 1761 (2004)
|...+..++|+|||++|++++.+ |.|.+|++.. |+. +.....+......+++ +++++++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 67788899999999999998876 7999998765 433 3344445666777888 788777665 57899999
Q ss_pred EcCCCCCCCcceEEEEEec--------CccceeeeEEeCCCc-EEEee-cCCeEEEEECCCCce------e------EEe
Q psy8748 1762 DLNNRDSTGAAKVIRELLG--------YEGFLSSCRFIDDTT-LLTGS-GDMKIVTWNLETGQR------I------HEV 1819 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~g--------h~~~Vssvafsdd~~-LlSgS-~DGtI~IWDl~tg~~------i------~~i 1819 (2004)
++................+ +...+.++.|++++. +++++ .++.|.+|++..... + ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975432222211111111 122346788887664 55544 578999998875442 1 122
Q ss_pred eccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeE--EEEEe---cCCCCeEEEEEeCCCCEEEEEECC--CeEE
Q psy8748 1820 AQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKC--VQTFF---GHEADVNSVCFHPSGLAFATGSED--KTAR 1891 (2004)
Q Consensus 1820 l~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~--I~tl~---~h~s~ItsIafSPdg~~LaSgS~D--GtIr 1891 (2004)
.......+..++|+|+|+++++++ .++.|.+||+.++.. +..+. .+.....+++|+|+|++++++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 234455688999999999888887 689999999987754 23332 233456899999999998777665 8999
Q ss_pred EEEcc--CCc--eeEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEC--CCCeeeEEE-ccCCCCeEEEEEc
Q psy8748 1892 LFDIR--ADQ--QIATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDL--LKTTHNGVL-SGHENRVTSISLS 1961 (2004)
Q Consensus 1892 IWDLr--tgk--~i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL--~tge~l~tL-~gHs~~VtsLaFS 1961 (2004)
+|++. +++ .+..+.. ...+..++|+|+|++|++++ .++.|.+|++ .+++..... ..+...+.|+.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99996 444 2333322 34577899999999998887 5789999654 566655443 2345678999885
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.74 E-value=1.4e-16 Score=203.54 Aligned_cols=226 Identities=15% Similarity=0.120 Sum_probs=161.4
Q ss_pred cceeEEEEeCCCCEEEEEeC---CCeEEEEECC---CCceEEEeeCCCCceEEEEEecCCCE-EEEeecCCeEEEEEcCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSL---DGKLIIWDTW---TGNKTQVIPLRSAWVMSVAFAQSGNF-VACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~---DGtIrVWDl~---Tgk~l~ti~~Ht~~ItsLafSPdg~~-LaSGS~DGtIrVWDl~t 1765 (2004)
..|.+++|+|| +.+++++. +....+|.+. .+... .+.... .+...+|+|+|+. +++.+.++.+.+||+.+
T Consensus 65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~ 141 (582)
T 3o4h_A 65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDG 141 (582)
T ss_dssp SEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEET
T ss_pred cccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccC
Confidence 57889999999 77777765 4545555433 23333 333222 3446788888863 33334444566999976
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecC----CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGD----MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~D----GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La 1840 (2004)
++ . ..+..+.. ..+.|++++ .+++++.+ +.|++||+.+++.. .+..+.+.+..++|+|||+.|+
T Consensus 142 g~------~-~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~--~l~~~~~~~~~~~~SpDG~~l~ 210 (582)
T 3o4h_A 142 GG------L-RELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR--VFDSGEGSFSSASISPGMKVTA 210 (582)
T ss_dssp TE------E-EEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE--EECCSSCEEEEEEECTTSCEEE
T ss_pred Cc------E-EEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce--EeecCCCccccceECCCCCEEE
Confidence 42 1 12222222 677787555 46656666 78999999988765 3357778899999999999999
Q ss_pred EEECCC--eEEEEECCCCeEEEEEecCCCCeEEEE--------EeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCC
Q psy8748 1841 TGSVDK--SCKLWDFREKKCVQTFFGHEADVNSVC--------FHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN 1910 (2004)
Q Consensus 1841 SGS~DG--sIrIWDlrs~k~I~tl~~h~s~ItsIa--------fSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~ 1910 (2004)
++..+| .|++||+.+++.. .+..|...+..++ |+|||..+++++.||++++|++ ++... ...
T Consensus 211 ~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-----~~~ 282 (582)
T 3o4h_A 211 GLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-----APQ 282 (582)
T ss_dssp EEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-----CCS
T ss_pred EccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-----cCC
Confidence 888888 8999999998877 7777777777777 9999988999999999999999 55443 122
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCe---EEEEECCC
Q psy8748 1911 SGFTSCAVSSSGRYIFCGSDDNN---VHVWDLLK 1941 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGSsDGs---IrIWDL~t 1941 (2004)
..+.+++|+ +|+++++++.+.. +++||...
T Consensus 283 ~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 283 GNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp SEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 568899999 9999998887744 67777543
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.72 E-value=8.6e-16 Score=191.23 Aligned_cols=290 Identities=11% Similarity=0.089 Sum_probs=198.1
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC----------ceEEE-----eeCCCCceEEEEEecCCCEEE----E
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG----------NKTQV-----IPLRSAWVMSVAFAQSGNFVA----C 1751 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg----------k~l~t-----i~~Ht~~ItsLafSPdg~~La----S 1751 (2004)
+...++.+++++++.++++++.|| +++|+.... ..... ...+...|.+++|+|+|++|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345689999999999999999988 889864211 11111 123566799999999999999 7
Q ss_pred eecCCeEEEEEcCCC-----CCCCcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEeecccc
Q psy8748 1752 GGMDNMCTVYDLNNR-----DSTGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQAHI 1824 (2004)
Q Consensus 1752 GS~DGtIrVWDl~t~-----~~~~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~ 1824 (2004)
|+.|+.|++||+.+. ...........+.+|...+.++.|+++ ..+++++.||.|++||++++..... ..+|.
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~-~~~~~ 192 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA-TLPST 192 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE-EECGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee-ccCCC
Confidence 889999999998753 111122335566778999999999964 5688899999999999998865533 34688
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-------CCeEEEEEeCCCCEEEE-EECCC------eE
Q psy8748 1825 GDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE-------ADVNSVCFHPSGLAFAT-GSEDK------TA 1890 (2004)
Q Consensus 1825 ~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~-------s~ItsIafSPdg~~LaS-gS~DG------tI 1890 (2004)
..|.+++|+|+|++|++|+.||.|++||.+ ++....+..|. ..|.+++|++++.++++ ++.|| .+
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 899999999999999999999999999998 55555554432 37999999998877654 33443 38
Q ss_pred EEEEccCCc-----eeEEEcCC-----CCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCC---eeeEEEc-------
Q psy8748 1891 RLFDIRADQ-----QIATYLPP-----NKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKT---THNGVLS------- 1949 (2004)
Q Consensus 1891 rIWDLrtgk-----~i~t~~~~-----~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tg---e~l~tL~------- 1949 (2004)
++|++++.+ ....+... ....+...+.+-++.+++++++. .+.|.++..... .....+.
T Consensus 272 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra~l 351 (434)
T 2oit_A 272 VMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAEL 351 (434)
T ss_dssp EEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGGGCCBC
T ss_pred EEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEeccccccccc
Confidence 999998652 11222111 11222334444477777776665 445666654321 1011110
Q ss_pred -----cCCCCeEEEEEc---------------CCCCEEEEEECCCeEEEEECCC
Q psy8748 1950 -----GHENRVTSISLS---------------PNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1950 -----gHs~~VtsLaFS---------------PDg~~LaSgS~DGtIrIWdlst 1983 (2004)
+......++++. |-...|..-+.||.+..|.+-.
T Consensus 352 P~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 352 PVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp CBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred cCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 122234444442 1235788888999999998754
No 159
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.71 E-value=2e-15 Score=178.99 Aligned_cols=250 Identities=12% Similarity=0.145 Sum_probs=173.2
Q ss_pred ccccceeEEEEeCCCCEEEEEeC---CCeEEEEECCCCc--eEEEeeCCCCceEEEEEecCCCEEEEee-cCCeEEEEEc
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSL---DGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQSGNFVACGG-MDNMCTVYDL 1763 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~---DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPdg~~LaSGS-~DGtIrVWDl 1763 (2004)
.+...+..++|+|||+ +++++. ++.|++||+.+++ .+..+..+...+..++|+|+|+++++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 4556788999999999 555544 6899999997775 3444455677889999999999888887 6799999999
Q ss_pred CCCCCCCcceEEEEEec---------CccceeeeEEeCCCcEEE-eecCCeEEEEECC-CCceeEE--eeccccCCeEEE
Q psy8748 1764 NNRDSTGAAKVIRELLG---------YEGFLSSCRFIDDTTLLT-GSGDMKIVTWNLE-TGQRIHE--VAQAHIGDVVSI 1830 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~g---------h~~~Vssvafsdd~~LlS-gS~DGtI~IWDl~-tg~~i~~--il~~h~~~ItsL 1830 (2004)
.... .......... ....+.++.|++++.+++ ...++.|.+||+. +++.... ........+..+
T Consensus 116 ~~~g---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~ 192 (347)
T 3hfq_A 116 AADG---ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL 192 (347)
T ss_dssp CTTS---CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE
T ss_pred CCCC---CeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE
Confidence 6422 2222222221 122467788886655544 4457899999998 4543211 112233467889
Q ss_pred EECCCCCEEEEE-ECCCeEEEEECCC--CeE--EEEEecCC------CCeEEEEEeCCCCEEE-EEECCCeEEEEEccCC
Q psy8748 1831 SLSPDGQYFVTG-SVDKSCKLWDFRE--KKC--VQTFFGHE------ADVNSVCFHPSGLAFA-TGSEDKTARLFDIRAD 1898 (2004)
Q Consensus 1831 afSPdg~~LaSG-S~DGsIrIWDlrs--~k~--I~tl~~h~------s~ItsIafSPdg~~La-SgS~DGtIrIWDLrtg 1898 (2004)
+|+|+|++++++ ..++.|.+|++.. ++. +..+.... ..+..++|+|+|++++ ++..++.|.+||+...
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 999999976664 5678999999874 443 22333222 3588999999999875 5556899999999732
Q ss_pred ---ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEE--CCCCeee
Q psy8748 1899 ---QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD-NNVHVWD--LLKTTHN 1945 (2004)
Q Consensus 1899 ---k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD-GsIrIWD--L~tge~l 1945 (2004)
+.+..+. .+...+..++|+|+|++|++++.+ +.|.+|+ ..+++..
T Consensus 273 g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 273 GHLTLIQQIS--TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp GCEEEEEEEE--CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CcEEEeEEEe--cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 3333332 223457899999999999888765 8999994 4556554
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.71 E-value=8.6e-17 Score=210.22 Aligned_cols=277 Identities=11% Similarity=0.052 Sum_probs=197.2
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCC---ceEEEEEecCCCEEEEeec---------CCeEEEEEcC
Q psy8748 1697 SVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSA---WVMSVAFAQSGNFVACGGM---------DNMCTVYDLN 1764 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~---~ItsLafSPdg~~LaSGS~---------DGtIrVWDl~ 1764 (2004)
+++|+|||+++++ +.||.|++||+.+++....+..+.. .+.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 7899999965555 4699999999999998777765543 4899999999999998876 7899999998
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCe-----------------
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDV----------------- 1827 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~I----------------- 1827 (2004)
+++.... ..+ ...+..+.|++++..++...++.|++||+.+++.......++...+
T Consensus 99 ~g~~~~~----~~l---~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 99 NGEFVRG----NEL---PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp TTEECCS----SCC---CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred CCccccc----eec---CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 7542100 111 2457889999877655545689999999998876532223333222
Q ss_pred EEEEECCCCCEEEEEECCC----------------------------------eEEEEECCCCeEE---E-----EEecC
Q psy8748 1828 VSISLSPDGQYFVTGSVDK----------------------------------SCKLWDFREKKCV---Q-----TFFGH 1865 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS~DG----------------------------------sIrIWDlrs~k~I---~-----tl~~h 1865 (2004)
.+++|+|||++|++++.|. .|++||+.+++.. . .+.+|
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 4899999999999987652 7889999887642 1 12357
Q ss_pred CCCeEEEEEeCCCCEEEEEECC----CeEEEEE----ccCCceeEEEc--CCCCCCCeE-----EEEEcCCCCEEEE--E
Q psy8748 1866 EADVNSVCFHPSGLAFATGSED----KTARLFD----IRADQQIATYL--PPNKNSGFT-----SCAVSSSGRYIFC--G 1928 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSgS~D----GtIrIWD----Lrtgk~i~t~~--~~~~~s~It-----sLafSPdG~~LaS--G 1928 (2004)
...+.+++|+||+++++++... ..|.+|| ..+++...... ...+...+. .+.|+|||+.++. +
T Consensus 252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 331 (719)
T 1z68_A 252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFS 331 (719)
T ss_dssp CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEE
T ss_pred cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEE
Confidence 7789999999998777765432 2488899 77665443221 012333344 6789999996554 4
Q ss_pred eCCC--eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCC
Q psy8748 1929 SDDN--NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWD-----QFVKVWQESN 1983 (2004)
Q Consensus 1929 SsDG--sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D-----GtIrIWdlst 1983 (2004)
..+| .|++||+.+++ ...+..+...+..+.++ +++.|+..+.+ +.+++|.+..
T Consensus 332 ~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 332 DKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 4555 57777877666 45566666778888888 88887777665 8889998753
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.70 E-value=1.3e-14 Score=174.75 Aligned_cols=281 Identities=11% Similarity=0.094 Sum_probs=189.8
Q ss_pred EEEEEeCC--CeEEEEEC--CCCceEEE--ee-CCCCceEEEEEecCCCEEEEeecCCeEEEEEcC-CCCCCCcceEEEE
Q psy8748 1706 HCVSGSLD--GKLIIWDT--WTGNKTQV--IP-LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN-NRDSTGAAKVIRE 1777 (2004)
Q Consensus 1706 ~LASGS~D--GtIrVWDl--~Tgk~l~t--i~-~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~-t~~~~~~~k~i~s 1777 (2004)
++++|+.. +.|.+|++ .+|+.... .. .....+..++|+|+|+++++++.+ .|.+|++. ++. ......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~----~~~~~~ 78 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE----IVHEAS 78 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE----EEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC----EEEeeE
Confidence 35556543 56877754 56654322 21 233468899999999999998887 89999986 432 111111
Q ss_pred EecCccceeeeEEeCCCc---EEEee-------------cCCeEEEEECC-CCceeEEeec---cccCCeEEEEECCCCC
Q psy8748 1778 LLGYEGFLSSCRFIDDTT---LLTGS-------------GDMKIVTWNLE-TGQRIHEVAQ---AHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1778 l~gh~~~Vssvafsdd~~---LlSgS-------------~DGtI~IWDl~-tg~~i~~il~---~h~~~ItsLafSPdg~ 1837 (2004)
.... +....+.+++++. ++++. .+|.+.+|++. .++....+.. .+...+.+++|+|+|+
T Consensus 79 ~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~ 157 (365)
T 1jof_A 79 HPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET 157 (365)
T ss_dssp EECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred eecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence 1111 2345577777665 33443 68999999997 4554322211 2456799999999999
Q ss_pred EEEEEEC-CCeEEEEECC-CCeEE--EEEe--cCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEEcc--CCceeE---EEc
Q psy8748 1838 YFVTGSV-DKSCKLWDFR-EKKCV--QTFF--GHEADVNSVCFHPSGLAFATGSE-DKTARLFDIR--ADQQIA---TYL 1905 (2004)
Q Consensus 1838 ~LaSGS~-DGsIrIWDlr-s~k~I--~tl~--~h~s~ItsIafSPdg~~LaSgS~-DGtIrIWDLr--tgk~i~---t~~ 1905 (2004)
+++++.. ++.|++||+. +++.. ..+. .+...+..++|+|+|+++++++. ++.|.+|++. +++... .+.
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence 8888764 6799999998 66543 2333 23567999999999999888775 6899999875 455421 221
Q ss_pred -CCCC----CC------CeEEEE-EcCCCCEEEEEeCCC------eEEEEECC-CCeeeE---EEccCCCCeEEEEEcC-
Q psy8748 1906 -PPNK----NS------GFTSCA-VSSSGRYIFCGSDDN------NVHVWDLL-KTTHNG---VLSGHENRVTSISLSP- 1962 (2004)
Q Consensus 1906 -~~~~----~s------~ItsLa-fSPdG~~LaSGSsDG------sIrIWDL~-tge~l~---tL~gHs~~VtsLaFSP- 1962 (2004)
.+.. .. .+..++ |+|||++|++++.++ .|.+|++. +++... ....+...+..++|+|
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~ 317 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC 317 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence 1111 11 478899 999999988776432 89999996 566543 2334555677899999
Q ss_pred --CCCEEEEEECC-CeEEEEECCCCeEEEEEEee
Q psy8748 1963 --NGMALVTSSWD-QFVKVWQESNTIVWKVLKVY 1993 (2004)
Q Consensus 1963 --Dg~~LaSgS~D-GtIrIWdlstg~l~k~Ik~~ 1993 (2004)
||++|++++.+ +.|.+|+++... +..+...
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~~-l~~~~~~ 350 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDEF-LHRVARV 350 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETTE-EEEEEEE
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchhh-CceeeEE
Confidence 89999999875 899999998773 3444433
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.70 E-value=7e-15 Score=194.20 Aligned_cols=290 Identities=14% Similarity=0.070 Sum_probs=185.1
Q ss_pred eeEEEEeCCCCEEEEEeCC---------CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1695 VNSVHYSGDSRHCVSGSLD---------GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1695 VtsLaFSPDG~~LASGS~D---------GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
..+++|||||++|+.++.+ +.+.+||+.+++... +..|.+.+...+|||||+.|+.+. ++.|++|+..+
T Consensus 64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~ 141 (740)
T 4a5s_A 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN 141 (740)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC
Confidence 3468999999999998876 567799999987553 566778899999999999998884 68899999876
Q ss_pred CCCCCc---ceEEEEEecCc---------cceeeeEEeCCCc-EEEeecC------------------------------
Q psy8748 1766 RDSTGA---AKVIRELLGYE---------GFLSSCRFIDDTT-LLTGSGD------------------------------ 1802 (2004)
Q Consensus 1766 ~~~~~~---~k~i~sl~gh~---------~~Vssvafsdd~~-LlSgS~D------------------------------ 1802 (2004)
+..... ......+.++. +....+.|++++. ++.++.|
T Consensus 142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA 221 (740)
T ss_dssp SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence 531100 00000111111 1223477886664 5544311
Q ss_pred ------CeEEEEECCC---Cc--eeEEeec-----cccCCeEEEEECCCCCEEEEEECC----CeEEEEECCCCe----E
Q psy8748 1803 ------MKIVTWNLET---GQ--RIHEVAQ-----AHIGDVVSISLSPDGQYFVTGSVD----KSCKLWDFREKK----C 1858 (2004)
Q Consensus 1803 ------GtI~IWDl~t---g~--~i~~il~-----~h~~~ItsLafSPdg~~LaSGS~D----GsIrIWDlrs~k----~ 1858 (2004)
..|++||+.+ ++ ....+.. ++...+..++|+|||+.++..... ..|++||+.+++ +
T Consensus 222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~ 301 (740)
T 4a5s_A 222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNC 301 (740)
T ss_dssp TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence 1588899988 73 2223321 366779999999999976665432 379999998876 2
Q ss_pred E--EEE--ecCCCCeE-----EEEEeCCCCEEE-EEEC-CC--eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEE
Q psy8748 1859 V--QTF--FGHEADVN-----SVCFHPSGLAFA-TGSE-DK--TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1859 I--~tl--~~h~s~It-----sIafSPdg~~La-SgS~-DG--tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~L 1925 (2004)
. ..+ ..+...+. ...|+|||+.++ ..+. +| .|++||..++.... +. .+ ...+..+.. ++++.|
T Consensus 302 ~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT-~g-~~~v~~~~~-~d~~~i 377 (740)
T 4a5s_A 302 LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-IT-KG-TWEVIGIEA-LTSDYL 377 (740)
T ss_dssp CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SC-CS-SSCEEEEEE-ECSSEE
T ss_pred eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cc-cC-CEEEEEEEE-EeCCEE
Confidence 1 111 34555544 788999999876 5553 44 58888887665442 22 22 344555432 446665
Q ss_pred EEEeCC-----C--eEEEEECCCCeeeEEEcc----CCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEE
Q psy8748 1926 FCGSDD-----N--NVHVWDLLKTTHNGVLSG----HENRVTSISLSPNGMALVTSSWD---QFVKVWQESNTIVWKVL 1990 (2004)
Q Consensus 1926 aSGSsD-----G--sIrIWDL~tge~l~tL~g----Hs~~VtsLaFSPDg~~LaSgS~D---GtIrIWdlstg~l~k~I 1990 (2004)
+..+.. + .|+..++..+.....+.. ....+..+.|+|++++++..... ..+.+++..+++....+
T Consensus 378 ~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 378 YYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp EEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 544433 3 455555544433323432 24578999999999987665433 47888898887654444
No 163
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.68 E-value=3.3e-15 Score=186.01 Aligned_cols=269 Identities=16% Similarity=0.132 Sum_probs=186.6
Q ss_pred CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC-----CcceE----EEEEecCccc
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST-----GAAKV----IRELLGYEGF 1784 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~-----~~~k~----i~sl~gh~~~ 1784 (2004)
+.+++|+... . .....+..+++++++.++++++.+| +++|+....... ..... ......+...
T Consensus 23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 4688886421 1 2344678999999999999999888 899876421100 00010 0112235667
Q ss_pred eeeeEEeCCC-cEE----EeecCCeEEEEECCCC--------cee--EEeeccccCCeEEEEECCC-CCEEEEEECCCeE
Q psy8748 1785 LSSCRFIDDT-TLL----TGSGDMKIVTWNLETG--------QRI--HEVAQAHIGDVVSISLSPD-GQYFVTGSVDKSC 1848 (2004)
Q Consensus 1785 Vssvafsdd~-~Ll----SgS~DGtI~IWDl~tg--------~~i--~~il~~h~~~ItsLafSPd-g~~LaSGS~DGsI 1848 (2004)
+.+++|++++ .++ +|+.|+.|++||+.++ +.+ .....+|...|.+++|+|+ +++|++++.||.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 9999999655 466 5778999999998754 111 2445678999999999997 8899999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCC-----CCCCeEEEEEcCCCC
Q psy8748 1849 KLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN-----KNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1849 rIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~-----~~s~ItsLafSPdG~ 1923 (2004)
++||++++..+....+|...|.+++|+|+|++|++|+.||.|++||.+ ++....+..+. +...+.+++|++++.
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~ 253 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV 253 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence 999999998777777889999999999999999999999999999998 55555553322 223789999999888
Q ss_pred EEEEE-eCCC------eEEEEECCCCe-----eeEEEc-------cCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCC
Q psy8748 1924 YIFCG-SDDN------NVHVWDLLKTT-----HNGVLS-------GHENRVTSISLSPNGMALVTSSW-DQFVKVWQESN 1983 (2004)
Q Consensus 1924 ~LaSG-SsDG------sIrIWDL~tge-----~l~tL~-------gHs~~VtsLaFSPDg~~LaSgS~-DGtIrIWdlst 1983 (2004)
++++. +.+| .+++|++.+.. ....+. +...+-..+.+-++.+++++++. .+.|.+....+
T Consensus 254 ~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~ 333 (434)
T 2oit_A 254 FAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS 333 (434)
T ss_dssp EEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred EEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence 77653 3443 38999997642 111111 12222233444467677666554 56678877654
Q ss_pred C-eEEEEEE
Q psy8748 1984 T-IVWKVLK 1991 (2004)
Q Consensus 1984 g-~l~k~Ik 1991 (2004)
. ..|....
T Consensus 334 ~~~~~~~~~ 342 (434)
T 2oit_A 334 DQINWESWL 342 (434)
T ss_dssp TSSCEEEEE
T ss_pred CCCccEEEe
Confidence 2 2355443
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=2e-15 Score=180.43 Aligned_cols=279 Identities=11% Similarity=0.015 Sum_probs=187.2
Q ss_pred ccceeEEEEeCCCCEEEEEeCC---CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLD---GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS 1768 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~D---GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~ 1768 (2004)
...+.+++|+|||++|+.+..+ ..|++||+.+++.......+......+.|+|+|+.|+.++.++.|++|++.++.
T Consensus 35 ~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~- 113 (396)
T 3c5m_A 35 RNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE- 113 (396)
T ss_dssp CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC-
T ss_pred ceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC-
Confidence 3447889999999998877543 478999998887655434333333347899999999999999999999987653
Q ss_pred CCcceEEEEEecCccceee-------------------eEEeCCC-cEEEe-----ecCCeEEEEECCCCceeEEeeccc
Q psy8748 1769 TGAAKVIRELLGYEGFLSS-------------------CRFIDDT-TLLTG-----SGDMKIVTWNLETGQRIHEVAQAH 1823 (2004)
Q Consensus 1769 ~~~~k~i~sl~gh~~~Vss-------------------vafsdd~-~LlSg-----S~DGtI~IWDl~tg~~i~~il~~h 1823 (2004)
.. .....+...... +.+++++ .++.+ ..++.|++||+.+++..... .+
T Consensus 114 ---~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~ 186 (396)
T 3c5m_A 114 ---EQ--VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH--QD 186 (396)
T ss_dssp ---EE--EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EE
T ss_pred ---cE--EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec--cC
Confidence 11 111112221111 2233332 22222 45678999999988764332 46
Q ss_pred cCCeEEEEECC-CCCEEEEEECC------CeEEEEECCCCeEEEEEecC--CCCeEEEEEeCCCCEEEEEECC-----Ce
Q psy8748 1824 IGDVVSISLSP-DGQYFVTGSVD------KSCKLWDFREKKCVQTFFGH--EADVNSVCFHPSGLAFATGSED-----KT 1889 (2004)
Q Consensus 1824 ~~~ItsLafSP-dg~~LaSGS~D------GsIrIWDlrs~k~I~tl~~h--~s~ItsIafSPdg~~LaSgS~D-----Gt 1889 (2004)
...+..+.|+| +++.++..+.+ ..|.+||+..++.. .+..+ ...+..++|+|+|++|+.++.+ +.
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV 265 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccce
Confidence 67789999999 78877776644 36889998765533 33233 2357889999999987776544 45
Q ss_pred EEEEEccCCceeEEEcCCCCCCCeEEEEEcC-CCCEEEEEe----------------CCCeEEEEECCCCeeeEEEccCC
Q psy8748 1890 ARLFDIRADQQIATYLPPNKNSGFTSCAVSS-SGRYIFCGS----------------DDNNVHVWDLLKTTHNGVLSGHE 1952 (2004)
Q Consensus 1890 IrIWDLrtgk~i~t~~~~~~~s~ItsLafSP-dG~~LaSGS----------------sDGsIrIWDL~tge~l~tL~gHs 1952 (2004)
|++||+.+++.......+. .. +.|+| +|+++++++ .++.|++||+.+++.. .+..+.
T Consensus 266 l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~ 339 (396)
T 3c5m_A 266 IYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHS 339 (396)
T ss_dssp EEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECC
T ss_pred EEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCC
Confidence 9999998887544332221 23 88999 999888765 3478999999887754 344444
Q ss_pred C-----------CeEEEEEcCCCCEEEEEEC-CCeEEEE--ECCCCe
Q psy8748 1953 N-----------RVTSISLSPNGMALVTSSW-DQFVKVW--QESNTI 1985 (2004)
Q Consensus 1953 ~-----------~VtsLaFSPDg~~LaSgS~-DGtIrIW--dlstg~ 1985 (2004)
. .+..++|+|||+.|+.++. ++...+| ++.++.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 340 TSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred CccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 4 2567899999998887765 4555555 455553
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.64 E-value=2e-14 Score=172.21 Aligned_cols=240 Identities=13% Similarity=0.026 Sum_probs=158.1
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEE--ecCCCEEEEe-----------------
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF--AQSGNFVACG----------------- 1752 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLaf--SPdg~~LaSG----------------- 1752 (2004)
...+.+.+|+|||+.|+.++.++.|++||+.+++.......+...+....| ++++..++..
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 80 GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhh
Confidence 334445689999999999999999999999999888777777776655544 8899988743
Q ss_pred -----ecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCc-EEEeec------CCeEEEEECCCCceeEEe
Q psy8748 1753 -----GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTT-LLTGSG------DMKIVTWNLETGQRIHEV 1819 (2004)
Q Consensus 1753 -----S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~-LlSgS~------DGtI~IWDl~tg~~i~~i 1819 (2004)
..++.|.+||+.+++ ...+..+...+..+.|++ ++. ++.+.. ...|.++|...+... .+
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~-------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l 231 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGE-------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KV 231 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ES
T ss_pred hhhccCCcceEEEEECCCCc-------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Ee
Confidence 234679999987642 223334556678888988 654 544443 337888888765543 33
Q ss_pred ecccc-CCeEEEEECCCCCEEEEEEC-CC----eEEEEECCCCeEEE--EEecCCC---CeEEEEEeCCCCEEEEE----
Q psy8748 1820 AQAHI-GDVVSISLSPDGQYFVTGSV-DK----SCKLWDFREKKCVQ--TFFGHEA---DVNSVCFHPSGLAFATG---- 1884 (2004)
Q Consensus 1820 l~~h~-~~ItsLafSPdg~~LaSGS~-DG----sIrIWDlrs~k~I~--tl~~h~s---~ItsIafSPdg~~LaSg---- 1884 (2004)
..... ..+...+|+|||+.|+..+. ++ .|++||+.+++... .+.++.. ....+.|+|||+.++..
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 311 (388)
T 3pe7_A 232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD 311 (388)
T ss_dssp CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence 22222 35778899999997765443 22 39999999887432 2222100 01223799999887754
Q ss_pred -----ECCCeEEEEEccCCceeEEEcCCCC--------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEEC
Q psy8748 1885 -----SEDKTARLFDIRADQQIATYLPPNK--------NSGFTSCAVSSSGRYIFCGSD-DNNVHVWDL 1939 (2004)
Q Consensus 1885 -----S~DGtIrIWDLrtgk~i~t~~~~~~--------~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL 1939 (2004)
..++.|++||+.+++.......... ...+..++|+|||+.|+.++. +|...+|.+
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 312 SGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -----CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 4466899999998765433322110 003677899999998887664 666666543
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.64 E-value=8.7e-14 Score=168.77 Aligned_cols=256 Identities=15% Similarity=0.133 Sum_probs=184.1
Q ss_pred EEEEeCCCCEEEEEe----------CCCeEEEEECCCCceEEEeeCC------CCceEEEEEecCCCEEEEeec--CCeE
Q psy8748 1697 SVHYSGDSRHCVSGS----------LDGKLIIWDTWTGNKTQVIPLR------SAWVMSVAFAQSGNFVACGGM--DNMC 1758 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS----------~DGtIrVWDl~Tgk~l~ti~~H------t~~ItsLafSPdg~~LaSGS~--DGtI 1758 (2004)
.++|+|||+++++++ .++.|.+||..+++.+..+... ......++|+|+|++++++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 789999999999886 2678999999999998887643 345678999999999998874 5899
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCC-CceeEEe-----eccccCCeEEE
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLET-GQRIHEV-----AQAHIGDVVSI 1830 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~t-g~~i~~i-----l~~h~~~ItsL 1830 (2004)
.+||+.++ +....+....+. ..+.+.+ ...+++.+.||.+.+|+... ++..... +.....++ .+
T Consensus 134 ~v~d~~~~------~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~ 205 (361)
T 2oiz_A 134 GIVDVAKG------DYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FI 205 (361)
T ss_dssp EEEETTTT------EEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CS
T ss_pred EEEECCCC------cEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EE
Confidence 99999864 333331112221 1122333 24678889999999999865 4433111 11111221 23
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCe--EEEEEecCC----------CCeEEEEEeCCCCEEEEEEC-----------C
Q psy8748 1831 SLSPDGQYFVTGSVDKSCKLWDFREKK--CVQTFFGHE----------ADVNSVCFHPSGLAFATGSE-----------D 1887 (2004)
Q Consensus 1831 afSPdg~~LaSGS~DGsIrIWDlrs~k--~I~tl~~h~----------s~ItsIafSPdg~~LaSgS~-----------D 1887 (2004)
.+.+++..++..+.+|.|.++|+.... ....+.... .....++|+|+++.++++.. +
T Consensus 206 ~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~ 285 (361)
T 2oiz_A 206 APALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA 285 (361)
T ss_dssp CCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCC
T ss_pred EecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCC
Confidence 335677777778889999999987543 222221100 11223789999888877653 3
Q ss_pred CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEEccCCCCeEEEEEcCCCC
Q psy8748 1888 KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT--THNGVLSGHENRVTSISLSPNGM 1965 (2004)
Q Consensus 1888 GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg--e~l~tL~gHs~~VtsLaFSPDg~ 1965 (2004)
+.|.+||+.+++.+.++.... ...++|+|+|+++++++. +.|.+||..++ +.+..+..+......++++|+|.
T Consensus 286 ~~v~viD~~t~~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 286 AEIWVMDTKTKQRVARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ceEEEEECCCCcEEEEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 489999999999988885432 789999999999998887 99999999999 99999877888899999999985
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.64 E-value=1e-14 Score=192.67 Aligned_cols=279 Identities=9% Similarity=0.039 Sum_probs=190.3
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCc-----eEEEEEecCCCEEEEeecC---------CeE
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAW-----VMSVAFAQSGNFVACGGMD---------NMC 1758 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~-----ItsLafSPdg~~LaSGS~D---------GtI 1758 (2004)
....+++|+|||++++++ ||.|++||+.+++....+..|... ...+.|+|||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345689999999999886 899999999999988888777543 2447899999999998876 567
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCe-----------
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDV----------- 1827 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~I----------- 1827 (2004)
.+||+.+++ ...+..+...+....|++++..++...++.|++||..++........++...+
T Consensus 95 ~~~d~~~~~-------~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 95 DIYDLNKRQ-------LITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEEETTTTE-------ECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEEECCCCc-------EEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 799998753 22345566778999999877655555789999999998875533223332222
Q ss_pred ------EEEEECCCCCEEEEEECCC------------------------------------eEEEEECCC---Ce--EEE
Q psy8748 1828 ------VSISLSPDGQYFVTGSVDK------------------------------------SCKLWDFRE---KK--CVQ 1860 (2004)
Q Consensus 1828 ------tsLafSPdg~~LaSGS~DG------------------------------------sIrIWDlrs---~k--~I~ 1860 (2004)
..+.|+|||+.|+.++.|. .|++||+.+ ++ ...
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence 3589999999999875321 588899988 72 223
Q ss_pred EEe------cCCCCeEEEEEeCCCCEEEEEEC----CCeEEEEEccCCc----ee--EEEcCCCCCCCe-----EEEEEc
Q psy8748 1861 TFF------GHEADVNSVCFHPSGLAFATGSE----DKTARLFDIRADQ----QI--ATYLPPNKNSGF-----TSCAVS 1919 (2004)
Q Consensus 1861 tl~------~h~s~ItsIafSPdg~~LaSgS~----DGtIrIWDLrtgk----~i--~t~~~~~~~s~I-----tsLafS 1919 (2004)
.+. ++...+..++|+|||+.++.... +..|.+||+.+++ +. .......+...+ ...+|+
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT 327 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence 333 27778999999999997665543 2379999999887 21 111001222222 367899
Q ss_pred CCCCEEE-EEeC-C--CeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q psy8748 1920 SSGRYIF-CGSD-D--NNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWD-----QFVKVWQES 1982 (2004)
Q Consensus 1920 PdG~~La-SGSs-D--GsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D-----GtIrIWdls 1982 (2004)
|||+.++ ..+. + ..|++||+..++.. .+......|..+.. +|++.|+..+.. +...+|.++
T Consensus 328 pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 328 LDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence 9999877 5553 3 36888998766554 34444556666543 346655544432 344555443
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.63 E-value=1.3e-13 Score=159.14 Aligned_cols=241 Identities=11% Similarity=0.165 Sum_probs=181.2
Q ss_pred CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEe------cCccceeeeEEe-CCCcEEEeec--C
Q psy8748 1732 LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELL------GYEGFLSSCRFI-DDTTLLTGSG--D 1802 (2004)
Q Consensus 1732 ~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~------gh~~~Vssvafs-dd~~LlSgS~--D 1802 (2004)
++-..+.+++++++++++++...++.|.+|+.+.. ....+. ++...+..+++. +++.+++++. +
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-------~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~ 99 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT 99 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCc-------EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC
Confidence 34456899999999998888888999999997531 222222 233456788884 5666666653 8
Q ss_pred CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeCCCCE
Q psy8748 1803 MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF--GHEADVNSVCFHPSGLA 1880 (2004)
Q Consensus 1803 GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~--~h~s~ItsIafSPdg~~ 1880 (2004)
+.|.+|| .+++....+...+...+.+++++++|+.+++...++.|.+||.. ++.+..+. .+...+.+++++++|++
T Consensus 100 ~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 100 HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEI 177 (286)
T ss_dssp CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCE
Confidence 9999999 56666545434445678999999999977777778999999964 55555553 34456899999999987
Q ss_pred EEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeeeEEEccCCC--CeEE
Q psy8748 1881 FATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN-NVHVWDLLKTTHNGVLSGHEN--RVTS 1957 (2004)
Q Consensus 1881 LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDG-sIrIWDL~tge~l~tL~gHs~--~Vts 1957 (2004)
+++...++.|++||.. ++.+..+........+..++++++|+++++...++ .|.+||. +++.+..+..+.. .+.+
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFD 255 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEE
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCccee
Confidence 7777778999999974 56666664443335688999999999888887776 9999995 5666766655433 4789
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1958 ISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1958 LaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
++++++|+++++ +.|+.|++|+....
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 999999987776 67999999998654
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.62 E-value=1.3e-13 Score=164.06 Aligned_cols=254 Identities=12% Similarity=0.115 Sum_probs=190.4
Q ss_pred ccceeEEEEeCCCCEEEEEeCC------------------------CeEEEEECCCCceEEEee-CCCCceEEEEEecCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLD------------------------GKLIIWDTWTGNKTQVIP-LRSAWVMSVAFAQSG 1746 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~D------------------------GtIrVWDl~Tgk~l~ti~-~Ht~~ItsLafSPdg 1746 (2004)
-+.|.+++++|+|+++++...+ +.|.+||..+++....+. .+-....+++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4689999999999999888777 479999998898877664 344578899999999
Q ss_pred CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCC
Q psy8748 1747 NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD 1826 (2004)
Q Consensus 1747 ~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ 1826 (2004)
+++++...++.|++|+.+... .....+... . .. +. ...+...
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~-----~~~~~~~~~-~-----------------~~----------g~-----~~~~~~~ 144 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKE-----GPLLILGRS-M-----------------QP----------GS-----DQNHFCQ 144 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSS-----CCSEEESBT-T-----------------BC----------CC-----STTCCSS
T ss_pred CEEEEECCCCEEEEEeCCCCe-----EEEEEeccc-C-----------------CC----------CC-----CccccCC
Confidence 988888888999999875321 011111000 0 00 00 0123446
Q ss_pred eEEEEECC-CCCEEEEEE-CCCeEEEEECCCCeEEEEEecCC----------CCeEEEEEeCC-CCEEEEEECCCeEEEE
Q psy8748 1827 VVSISLSP-DGQYFVTGS-VDKSCKLWDFREKKCVQTFFGHE----------ADVNSVCFHPS-GLAFATGSEDKTARLF 1893 (2004)
Q Consensus 1827 ItsLafSP-dg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~h~----------s~ItsIafSPd-g~~LaSgS~DGtIrIW 1893 (2004)
...++++| +++++++.+ .++.|++|| .++..+..+.... ....+++++|+ +.++++...++.|++|
T Consensus 145 P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~ 223 (329)
T 3fvz_A 145 PTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF 223 (329)
T ss_dssp EEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence 78999999 787777775 689999999 5677666664222 34889999998 7777777788999999
Q ss_pred EccCCceeEEEcCCCCCCCeEEEEEcC------CCCEEEEEeCCCeEEEEECCCCeeeEEEc---cCCCCeEEEEEcCCC
Q psy8748 1894 DIRADQQIATYLPPNKNSGFTSCAVSS------SGRYIFCGSDDNNVHVWDLLKTTHNGVLS---GHENRVTSISLSPNG 1964 (2004)
Q Consensus 1894 DLrtgk~i~t~~~~~~~s~ItsLafSP------dG~~LaSGSsDGsIrIWDL~tge~l~tL~---gHs~~VtsLaFSPDg 1964 (2004)
|..+++.+..+........+..++++| +|+..++...++.|++||..+++.+..+. ++...+.+++++++|
T Consensus 224 ~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG 303 (329)
T 3fvz_A 224 KTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG 303 (329)
T ss_dssp ETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred ECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence 999899888886666667788999999 33322233345589999999999998873 677789999999999
Q ss_pred CEEEEEECCCeEEEEECCCC
Q psy8748 1965 MALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1965 ~~LaSgS~DGtIrIWdlstg 1984 (2004)
.++++...++.|++|+++..
T Consensus 304 ~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 304 TVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEEEESSSCCEEEEEEEEC
T ss_pred CEEEEECCCCEEEEEeCCcc
Confidence 88888888999999998753
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.61 E-value=8.1e-14 Score=180.19 Aligned_cols=290 Identities=12% Similarity=0.020 Sum_probs=202.2
Q ss_pred cccccccccceeEEEEeCCCCEEEEE--eCCCeEEEEECCCCceEEEeeCCCCceE---------EEEEe--cCCCE-EE
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSG--SLDGKLIIWDTWTGNKTQVIPLRSAWVM---------SVAFA--QSGNF-VA 1750 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASG--S~DGtIrVWDl~Tgk~l~ti~~Ht~~It---------sLafS--Pdg~~-La 1750 (2004)
...+.+|...|..++|++++-++++. +.++...||....+.....+..+...+. ...|+ |||+. |+
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 34577899999999999887777777 5688999998655556666766766666 66676 99998 76
Q ss_pred Eeec-CCeEEEEEcC--C-CCCCCcceEEEEEec-----CccceeeeEEeCCC-cEEEeecC----------CeEEEEEC
Q psy8748 1751 CGGM-DNMCTVYDLN--N-RDSTGAAKVIRELLG-----YEGFLSSCRFIDDT-TLLTGSGD----------MKIVTWNL 1810 (2004)
Q Consensus 1751 SGS~-DGtIrVWDl~--t-~~~~~~~k~i~sl~g-----h~~~Vssvafsdd~-~LlSgS~D----------GtI~IWDl 1810 (2004)
.++. +..|.+|++. . +. ...+.. +...+..+.|++++ .+++++.+ ..|++||+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~-------~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~ 168 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAV-------PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPL 168 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCC-------CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred EEECCCCeEEEEcCCCCCCCC-------CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEEC
Confidence 6554 4556666654 1 21 122333 45677888998665 46666665 58999999
Q ss_pred CC------CceeEEeeccccCCeEEEEECCCCCEEEEEECC--------CeEEEEECC-CC---eEEEEEecCCCCeEEE
Q psy8748 1811 ET------GQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD--------KSCKLWDFR-EK---KCVQTFFGHEADVNSV 1872 (2004)
Q Consensus 1811 ~t------g~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D--------GsIrIWDlr-s~---k~I~tl~~h~s~ItsI 1872 (2004)
.+ +... .+...+...+..++|+|||++|+.++.+ ..|++||+. ++ +.......+...+..+
T Consensus 169 ~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~ 247 (662)
T 3azo_A 169 DGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA 247 (662)
T ss_dssp TSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred CCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence 88 4432 3321445678889999999999988755 379999998 56 4444444557889999
Q ss_pred EEeCCCCEEEEEECCC--eEEEEEccCCceeEEEcCCCCCC--------CeEEEEEcCCCCEEEEEeCCCeEEEE--ECC
Q psy8748 1873 CFHPSGLAFATGSEDK--TARLFDIRADQQIATYLPPNKNS--------GFTSCAVSSSGRYIFCGSDDNNVHVW--DLL 1940 (2004)
Q Consensus 1873 afSPdg~~LaSgS~DG--tIrIWDLrtgk~i~t~~~~~~~s--------~ItsLafSPdG~~LaSGSsDGsIrIW--DL~ 1940 (2004)
.|+|||++++++..+| .|.+||..+++..... . .+.. .+..++|+++++++++++. |.+++| |+.
T Consensus 248 ~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~-~-~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~ 324 (662)
T 3azo_A 248 EWAPDGSLIVATDRTGWWNLHRVDPATGAATQLC-R-REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPE 324 (662)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECTTTCCEEESS-C-CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETT
T ss_pred EECCCCeEEEEECCCCCeEEEEEECCCCceeecc-c-ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECC
Confidence 9999999888888888 5666776566543222 1 1111 1467899999999999998 999998 655
Q ss_pred CCeeeEEEccCCCCeEEE-EEcCCCCEEEEEECCC--eEEEEECCCCeE
Q psy8748 1941 KTTHNGVLSGHENRVTSI-SLSPNGMALVTSSWDQ--FVKVWQESNTIV 1986 (2004)
Q Consensus 1941 tge~l~tL~gHs~~VtsL-aFSPDg~~LaSgS~DG--tIrIWdlstg~l 1986 (2004)
.++ ...+..|.+.+..+ +++.+.-++++++.+. .|.+|++.+++.
T Consensus 325 ~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 325 SGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp TTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 555 67777788888877 6654444455556664 455556667753
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.60 E-value=4.6e-14 Score=168.69 Aligned_cols=237 Identities=9% Similarity=0.017 Sum_probs=155.9
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEE-------------------EEEecCCCEEEEe-----
Q psy8748 1697 SVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMS-------------------VAFAQSGNFVACG----- 1752 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~Its-------------------LafSPdg~~LaSG----- 1752 (2004)
.+.|+|||++|+.++.++.|++||+.+++.......+...... +.|+|+++.++.+
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 3689999999999999999999999998877666655543333 3456777766544
Q ss_pred ecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-C-CcEEEeecC------CeEEEEECCCCceeEEeeccc-
Q psy8748 1753 GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-D-TTLLTGSGD------MKIVTWNLETGQRIHEVAQAH- 1823 (2004)
Q Consensus 1753 S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d-~~LlSgS~D------GtI~IWDl~tg~~i~~il~~h- 1823 (2004)
..++.|.+||+.++. ...+..+...+..+.|++ + ..++..+.+ ..|.+||...+... .+....
T Consensus 165 ~~~~~l~~~d~~~g~-------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~ 236 (396)
T 3c5m_A 165 NPTCRLIKVDIETGE-------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAE 236 (396)
T ss_dssp CCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCT
T ss_pred CCcceEEEEECCCCc-------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCC
Confidence 356789999987642 112223456677888887 4 445554433 46899998766533 222221
Q ss_pred cCCeEEEEECCCCCEEEEEECC-----CeEEEEECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEEEE------------
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVD-----KSCKLWDFREKKCVQTFFGHEADVNSVCFHP-SGLAFATGS------------ 1885 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~D-----GsIrIWDlrs~k~I~tl~~h~s~ItsIafSP-dg~~LaSgS------------ 1885 (2004)
...+..++|+|+|++|+.++.+ +.|++||+.+++....... .. .. +.|+| +|+++++++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC---------
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccc
Confidence 2357889999999987777544 4599999988765433221 22 33 88999 999888765
Q ss_pred ----CCCeEEEEEccCCceeEEEcCCCCC--------CCeEEEEEcCCCCEEEEEeC-CCe--EEEEECCCCee
Q psy8748 1886 ----EDKTARLFDIRADQQIATYLPPNKN--------SGFTSCAVSSSGRYIFCGSD-DNN--VHVWDLLKTTH 1944 (2004)
Q Consensus 1886 ----~DGtIrIWDLrtgk~i~t~~~~~~~--------s~ItsLafSPdG~~LaSGSs-DGs--IrIWDL~tge~ 1944 (2004)
.++.|++||+.+++........... .....++|+|+|+.|+.++. ++. |+.+|+..+..
T Consensus 314 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp -CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred cccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 2478999999877654322111100 02456789999998887765 454 45555555443
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.60 E-value=1.5e-13 Score=177.60 Aligned_cols=278 Identities=13% Similarity=0.078 Sum_probs=173.1
Q ss_pred EEEe--CCCCE-EEEEeC-CCeEEEEECC--CCceEEEeeC-----CCCceEEEEEecCCCEEEEeecC----------C
Q psy8748 1698 VHYS--GDSRH-CVSGSL-DGKLIIWDTW--TGNKTQVIPL-----RSAWVMSVAFAQSGNFVACGGMD----------N 1756 (2004)
Q Consensus 1698 LaFS--PDG~~-LASGS~-DGtIrVWDl~--Tgk~l~ti~~-----Ht~~ItsLafSPdg~~LaSGS~D----------G 1756 (2004)
.+|+ |||++ |+.++. ++.|++|++. .+.....+.. |...+.+++|+|||+.|++++.+ .
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence 4454 99998 776654 5677777765 2033444554 66788999999999999998877 5
Q ss_pred eEEEEEcCCCCCCCcceEEEEEe-cCccceeeeEEeCCCc-EEEeecC--------CeEEEEECC-CCc--eeEEeeccc
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELL-GYEGFLSSCRFIDDTT-LLTGSGD--------MKIVTWNLE-TGQ--RIHEVAQAH 1823 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~-gh~~~Vssvafsdd~~-LlSgS~D--------GtI~IWDl~-tg~--~i~~il~~h 1823 (2004)
.|++|++.+........ ...+. .+...+..+.|++++. ++.++.+ ..|++||+. ++. ....+...+
T Consensus 162 ~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp EEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred EEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 89999987610000001 12333 4456777888987664 6556544 489999998 562 333444556
Q ss_pred cCCeEEEEECCCCCEEEEEECCC--eEEEEECCCCeEEEEEecCCCC--------eEEEEEeCCCCEEEEEECCCeEEEE
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVDK--SCKLWDFREKKCVQTFFGHEAD--------VNSVCFHPSGLAFATGSEDKTARLF 1893 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~DG--sIrIWDlrs~k~I~tl~~h~s~--------ItsIafSPdg~~LaSgS~DGtIrIW 1893 (2004)
...+..++|+|||++++++..+| .|++||..+++.......+... +.+++|+|++.++++++. |.+++|
T Consensus 241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 319 (662)
T 3azo_A 241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLG 319 (662)
T ss_dssp TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEE
T ss_pred CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEE
Confidence 78899999999999888887888 6777777666654333332222 567899999999999988 999999
Q ss_pred --EccCCceeEEEcCCCCCCCeEEE-EEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEE
Q psy8748 1894 --DIRADQQIATYLPPNKNSGFTSC-AVSSSGRYIFCGSDDN--NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALV 1968 (2004)
Q Consensus 1894 --DLrtgk~i~t~~~~~~~s~ItsL-afSPdG~~LaSGSsDG--sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~La 1968 (2004)
|..+++ ...+. .+...+..+ +++.+.-++++++.+. .|++||+.+++.......|...+....+.+.....+
T Consensus 320 ~~d~~~~~-~~~l~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 396 (662)
T 3azo_A 320 ILDPESGE-LVDAA--GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTF 396 (662)
T ss_dssp EEETTTTE-EEECC--SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEE
T ss_pred EEECCCCc-EEEec--CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEE
Confidence 554444 44442 333456655 4433333334445453 566677777776554445544333333333333333
Q ss_pred EEECCCeEEEEE
Q psy8748 1969 TSSWDQFVKVWQ 1980 (2004)
Q Consensus 1969 SgS~DGtIrIWd 1980 (2004)
.+..+..|..|-
T Consensus 397 ~~~dg~~i~~~~ 408 (662)
T 3azo_A 397 TAPDGREIHAHI 408 (662)
T ss_dssp ECTTSCEEEEEE
T ss_pred EcCCCCEEEEEE
Confidence 333333565554
No 173
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.59 E-value=1.8e-13 Score=166.05 Aligned_cols=273 Identities=12% Similarity=0.099 Sum_probs=192.7
Q ss_pred CCCEEEEEe------CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee----------cCCeEEEEEcCCC
Q psy8748 1703 DSRHCVSGS------LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG----------MDNMCTVYDLNNR 1766 (2004)
Q Consensus 1703 DG~~LASGS------~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS----------~DGtIrVWDl~t~ 1766 (2004)
+++++++.. .|+.|.+||..+++.+..+..+..+ .++|+|+++++++++ .++.|.+||..+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 455555543 3689999999999999888877665 899999999999886 3678999998754
Q ss_pred CCCCcceEEEEEec------CccceeeeEEeCCC-cEEEeec--CCeEEEEECCCCceeEE-eeccccCCeEEEEECCCC
Q psy8748 1767 DSTGAAKVIRELLG------YEGFLSSCRFIDDT-TLLTGSG--DMKIVTWNLETGQRIHE-VAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~g------h~~~Vssvafsdd~-~LlSgS~--DGtI~IWDl~tg~~i~~-il~~h~~~ItsLafSPdg 1836 (2004)
+ ....+.. +......+.+++++ +++++.. ++.|.+||..+++.+.. +. . .....+.+.|++
T Consensus 92 ~------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~-~~~~~v~~~p~~ 162 (361)
T 2oiz_A 92 T------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--A-AGCWSVIPQPNR 162 (361)
T ss_dssp C------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG--G-TTEEEEEECTTS
T ss_pred c------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec--C-CCcceeEEcCCC
Confidence 2 3333321 22345677888655 5666653 68999999999987655 31 2 223335677765
Q ss_pred -CEEEEEECCCeEEEEECCC-CeEEEEE------ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCcee--EEEcC
Q psy8748 1837 -QYFVTGSVDKSCKLWDFRE-KKCVQTF------FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQI--ATYLP 1906 (2004)
Q Consensus 1837 -~~LaSGS~DGsIrIWDlrs-~k~I~tl------~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i--~t~~~ 1906 (2004)
..+++.+.||.+.+|+... ++..... .....+ ..+.+++++..++..+.+|.|.++|+..+... ..+..
T Consensus 163 ~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~ 241 (361)
T 2oiz_A 163 PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSL 241 (361)
T ss_dssp SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEES
T ss_pred CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccc
Confidence 6788889999999999865 5443221 122222 23345677878888888999999998755422 22111
Q ss_pred CC--------CCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEE
Q psy8748 1907 PN--------KNSGFTSCAVSSSGRYIFCGSD-----------DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMAL 1967 (2004)
Q Consensus 1907 ~~--------~~s~ItsLafSPdG~~LaSGSs-----------DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~L 1967 (2004)
.. .......++++|+++.++++.. .+.|.+||+.+++.+..+..+. +.+++|+|||++|
T Consensus 242 ~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l 319 (361)
T 2oiz_A 242 LNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLM 319 (361)
T ss_dssp CCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEE
T ss_pred cCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEE
Confidence 00 0011123689999988887653 3589999999999999998877 9999999999999
Q ss_pred EEEECCCeEEEEECCCC--eEEEEE
Q psy8748 1968 VTSSWDQFVKVWQESNT--IVWKVL 1990 (2004)
Q Consensus 1968 aSgS~DGtIrIWdlstg--~l~k~I 1990 (2004)
++++. +.|.+||..++ +..+.+
T Consensus 320 ~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 320 LTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EEECS-SCEEEEECSSSSCEEEEEE
T ss_pred EEeCC-CeEEEEECCCCcceeeEEe
Confidence 99887 99999999998 655443
No 174
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.59 E-value=1.5e-13 Score=165.67 Aligned_cols=247 Identities=12% Similarity=0.112 Sum_probs=169.0
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECC-CCceEEEeeC-CCCceEEEEEecCCCE--EEEee-------------cC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTW-TGNKTQVIPL-RSAWVMSVAFAQSGNF--VACGG-------------MD 1755 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~-Tgk~l~ti~~-Ht~~ItsLafSPdg~~--LaSGS-------------~D 1755 (2004)
..+..++|+|||++|++++.+ .|.+|++. +|+....... ..+.+.+++|+|+|++ ++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 467899999999999999887 99999987 7766543321 1123566899999994 45553 68
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEe-cCccceeeeEEeCCCc-EEEee-cCCeEEEEECC-CCceeEE-eec--cccCCeE
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELL-GYEGFLSSCRFIDDTT-LLTGS-GDMKIVTWNLE-TGQRIHE-VAQ--AHIGDVV 1828 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~-gh~~~Vssvafsdd~~-LlSgS-~DGtI~IWDl~-tg~~i~~-il~--~h~~~It 1828 (2004)
|.+.+|+++.... ......... .+...+.++.|++++. ++++. .++.|++||+. +++.... ... .+...+.
T Consensus 119 g~v~v~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 119 GYGNVFSVSETGK--LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp CEEEEEEECTTCC--EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred ceEEEEccCCCCc--CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 9999999974211 111111111 2456788899997764 55554 46899999998 6764321 111 2356689
Q ss_pred EEEECCCCCEEEEEEC-CCeEEEEECC--CCeEE---EEEec-------CCC------CeEEEE-EeCCCCEEEEEECCC
Q psy8748 1829 SISLSPDGQYFVTGSV-DKSCKLWDFR--EKKCV---QTFFG-------HEA------DVNSVC-FHPSGLAFATGSEDK 1888 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS~-DGsIrIWDlr--s~k~I---~tl~~-------h~s------~ItsIa-fSPdg~~LaSgS~DG 1888 (2004)
.++|+|+|+++++++. ++.|.+|+++ +++.. ..+.. +.. .+..++ |+|||+++++++.++
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999988875 6899999865 45432 12221 121 488999 999999988776433
Q ss_pred ------eEEEEEcc-CCceeEEEc-CCCCCCCeEEEEEcC---CCCEEEEEeCC-CeEEEEECCCC
Q psy8748 1889 ------TARLFDIR-ADQQIATYL-PPNKNSGFTSCAVSS---SGRYIFCGSDD-NNVHVWDLLKT 1942 (2004)
Q Consensus 1889 ------tIrIWDLr-tgk~i~t~~-~~~~~s~ItsLafSP---dG~~LaSGSsD-GsIrIWDL~tg 1942 (2004)
.|.+|++. +++...... ..........++|+| +|++|++++.+ +.|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 555432110 111223355788999 89999998864 89999998665
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.59 E-value=4.4e-12 Score=163.44 Aligned_cols=290 Identities=15% Similarity=0.139 Sum_probs=205.0
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECC--CCceEEEeeCCCCceEEEEEe----cCCCEEEEeec-CCeEEEEEcCCC
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTW--TGNKTQVIPLRSAWVMSVAFA----QSGNFVACGGM-DNMCTVYDLNNR 1766 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~--Tgk~l~ti~~Ht~~ItsLafS----Pdg~~LaSGS~-DGtIrVWDl~t~ 1766 (2004)
.+..++|+|||+++++++.|+.|.+||+. +++.+..+.... ....++|+ |+|+++++++. ++.|.++|..+.
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 34589999999999999999999999996 888888887644 46799999 69998877765 489999998664
Q ss_pred CCCCcceEEEEEec----------C-ccceeeeEEeCC-C-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEEC
Q psy8748 1767 DSTGAAKVIRELLG----------Y-EGFLSSCRFIDD-T-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLS 1833 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~g----------h-~~~Vssvafsdd-~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafS 1833 (2004)
+ .+..+.- | ...+..+..+.+ . .++....+|.|.++|...................++.|+
T Consensus 277 ~------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~ 350 (567)
T 1qks_A 277 E------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLD 350 (567)
T ss_dssp C------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred c------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceEC
Confidence 3 2222221 1 114455555543 2 345556679999999987654322222334557789999
Q ss_pred CCCCEEEEEE-CCCeEEEEECCCCeEEEEEec-CCCC--eEEEE-EeCCCCEEE-EEE-CCCeEEEEEccC-------Cc
Q psy8748 1834 PDGQYFVTGS-VDKSCKLWDFREKKCVQTFFG-HEAD--VNSVC-FHPSGLAFA-TGS-EDKTARLFDIRA-------DQ 1899 (2004)
Q Consensus 1834 Pdg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~-h~s~--ItsIa-fSPdg~~La-SgS-~DGtIrIWDLrt-------gk 1899 (2004)
|+|++++++. .++.|.++|..+++.+..+.. ...+ -.... ++|++..++ ++. .++.|.++|..+ .+
T Consensus 351 pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~k 430 (567)
T 1qks_A 351 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWK 430 (567)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred CCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCE
Confidence 9999988776 578999999999988776654 1111 12222 578755554 443 468999999987 56
Q ss_pred eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-------CCeEEEEECCCC-----ee-eEEEc--------cCCCCeEEE
Q psy8748 1900 QIATYLPPNKNSGFTSCAVSSSGRYIFCGSD-------DNNVHVWDLLKT-----TH-NGVLS--------GHENRVTSI 1958 (2004)
Q Consensus 1900 ~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-------DGsIrIWDL~tg-----e~-l~tL~--------gHs~~VtsL 1958 (2004)
.+.++...+ ..-..+..+|+++++.+... .++|.++|+.+. .. ...+. .-...+..+
T Consensus 431 vv~~i~~~g--~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (567)
T 1qks_A 431 ILDSFPALG--GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQG 508 (567)
T ss_dssp EEEEEECSC--SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEE
T ss_pred EEEEEecCC--CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEee
Confidence 667665432 23345778999999998763 358999999876 21 13332 124579999
Q ss_pred EEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEEe
Q psy8748 1959 SLSPNGMALVTSSW-----DQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1959 aFSPDg~~LaSgS~-----DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
.|+++|+.+..+.+ ++.|.|+|..+++..+.++.
T Consensus 509 ~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 509 EFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp EECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred eECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 99999998877643 79999999999987776663
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.57 E-value=1.1e-11 Score=142.17 Aligned_cols=283 Identities=8% Similarity=-0.032 Sum_probs=200.7
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe-eCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCC
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI-PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti-~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
+..+...+.+++++++|+.+++...++.|.+||.. ++..... ..+...+.+++++++|..+++...++.|..|+.+.
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g- 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG- 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-
Confidence 34456789999999999977777668899999987 5543322 33456799999999999888877788899998752
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEe-ecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTG-SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSg-S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D 1845 (2004)
.... .........+..+.+.+++.++++ ..++.|..||. +++............+.+++++++|+..++...+
T Consensus 88 ----~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 161 (299)
T 2z2n_A 88 ----IIKE-YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQN 161 (299)
T ss_dssp ----CEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred ----cEEE-EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCC
Confidence 1111 112223456777888766666555 45789999998 5554432223345678999999999877766667
Q ss_pred CeEEEEECCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1846 KSCKLWDFREKKCVQT-FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1846 GsIrIWDlrs~k~I~t-l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
+.|..||. +++.... .......+.+++++++|+.+++...++.|.+||. +++.. .+........+..++++++|++
T Consensus 162 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l 238 (299)
T 2z2n_A 162 NAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAITAGAGIDL 238 (299)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCE
T ss_pred CEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCceeEEECCCCCE
Confidence 89999998 6654432 2334456889999999987776666889999998 66543 3333334467889999999997
Q ss_pred EEEEeCCCeEEEEECCCCeeeEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGV-LSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~t-L~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
+++...++.|..||. +++.... +..+...+.++++ ++|.+.++.+ .+.|..++..++
T Consensus 239 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 239 WFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred EEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 666657889999998 4543322 3345678999999 8888766655 567777877664
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.57 E-value=1.9e-12 Score=149.44 Aligned_cols=243 Identities=12% Similarity=0.227 Sum_probs=177.2
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeC------CCCceEEEEEe-cCCCEEEEeec-CCeEEE
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL------RSAWVMSVAFA-QSGNFVACGGM-DNMCTV 1760 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~------Ht~~ItsLafS-Pdg~~LaSGS~-DGtIrV 1760 (2004)
.+|-..+.+++++++++++++...++.|.+||.. ++....+.. +...+.+++++ ++++.+++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4567789999999999988888889999999976 666666642 33568999995 67776666643 789999
Q ss_pred EEcCCCCCCCcceEEEEEe-cCccceeeeEEeCCCcEEEe-ecCCeEEEEECCCCceeEEeec-cccCCeEEEEECCCCC
Q psy8748 1761 YDLNNRDSTGAAKVIRELL-GYEGFLSSCRFIDDTTLLTG-SGDMKIVTWNLETGQRIHEVAQ-AHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~-gh~~~Vssvafsdd~~LlSg-S~DGtI~IWDl~tg~~i~~il~-~h~~~ItsLafSPdg~ 1837 (2004)
|+.+ + .....+. .+...+..+++.+++.++++ ..++.|.+||.. ++....+.. .+...+.+++++++|+
T Consensus 105 ~d~~-g------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 105 YNQY-G------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE 176 (286)
T ss_dssp ECTT-S------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred ECCC-C------cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC
Confidence 9943 2 2223332 23346778888766555554 567899999965 444433321 3445689999999998
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEecC--CCCeEEEEEeCCCCEEEEEECCC-eEEEEEccCCceeEEEcCCCCCCCeE
Q psy8748 1838 YFVTGSVDKSCKLWDFREKKCVQTFFGH--EADVNSVCFHPSGLAFATGSEDK-TARLFDIRADQQIATYLPPNKNSGFT 1914 (2004)
Q Consensus 1838 ~LaSGS~DGsIrIWDlrs~k~I~tl~~h--~s~ItsIafSPdg~~LaSgS~DG-tIrIWDLrtgk~i~t~~~~~~~s~It 1914 (2004)
++++...++.|++||. +++.+..+..+ ...+.+++++++|+++++...++ .|.+||. +++.+..+........+.
T Consensus 177 l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 177 IFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCF 254 (286)
T ss_dssp EEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred EEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence 7777777899999997 45556666443 35789999999998888887775 9999995 466666664433334578
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q psy8748 1915 SCAVSSSGRYIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1915 sLafSPdG~~LaSGSsDGsIrIWDL~tge 1943 (2004)
.++++|+|+++++ +.+++|++|+.....
T Consensus 255 ~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 255 DVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred eEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 9999999987666 679999999986543
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.56 E-value=6.6e-13 Score=156.39 Aligned_cols=270 Identities=12% Similarity=0.113 Sum_probs=192.7
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
..|.+++|++++..++..+.++.++.| .++....+..+...+.+++|+++|+.++++..++.|.+|+.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~----- 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE----- 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-----
Confidence 457788899988877777788899999 456666777777788999999999988888889999999987542
Q ss_pred eEEEEEecCccceeeeEEeCCCcEEEeec-C----CeEEEEECCCCceeEEee-ccccCCeEEEEECCCCCEEEEEEC--
Q psy8748 1773 KVIRELLGYEGFLSSCRFIDDTTLLTGSG-D----MKIVTWNLETGQRIHEVA-QAHIGDVVSISLSPDGQYFVTGSV-- 1844 (2004)
Q Consensus 1773 k~i~sl~gh~~~Vssvafsdd~~LlSgS~-D----GtI~IWDl~tg~~i~~il-~~h~~~ItsLafSPdg~~LaSGS~-- 1844 (2004)
.......+...+.++++.+++.+++++. + +.|.+||..++....... ......+.+++++|+|+++++...
T Consensus 78 -~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 78 -IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp -EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred -EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc
Confidence 1122224556788899987766666554 4 589999998876542221 123456899999999987766543
Q ss_pred ----CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEEccC-CceeEEE------cCCCCCCC
Q psy8748 1845 ----DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATG-SEDKTARLFDIRA-DQQIATY------LPPNKNSG 1912 (2004)
Q Consensus 1845 ----DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSg-S~DGtIrIWDLrt-gk~i~t~------~~~~~~s~ 1912 (2004)
.+.|..||...++... +......+.+++|+|+++.++++ +.++.|.+||..+ +.....+ ....+ ..
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~ 234 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EG 234 (333)
T ss_dssp TTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SE
T ss_pred ccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CC
Confidence 3567777766554332 32333457899999999866554 4578999999964 3322211 11111 35
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCC------CeEEEEEcCCCCEEEEEECCC
Q psy8748 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHEN------RVTSISLSPNGMALVTSSWDQ 1974 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~------~VtsLaFSPDg~~LaSgS~DG 1974 (2004)
+..++++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|++|+..|+.++.+|
T Consensus 235 ~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 235 PDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 778999999998888878899999998 5666666654433 689999999987777666553
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.53 E-value=4.2e-12 Score=149.97 Aligned_cols=257 Identities=11% Similarity=0.121 Sum_probs=176.7
Q ss_pred cceeEEEEeCCCCEEEEEe---------CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC---C--eE
Q psy8748 1693 NKVNSVHYSGDSRHCVSGS---------LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD---N--MC 1758 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS---------~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D---G--tI 1758 (2004)
..+...++ ||++++... .++.|++||+.+++... + ..+..+.|+|||+.|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 45677788 898887542 25789999998887543 3 568899999999999887754 3 36
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeec---------------------------CCeEEEEEC
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSG---------------------------DMKIVTWNL 1810 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~---------------------------DGtI~IWDl 1810 (2004)
.+|++.++ .... +..... +..+.|++++ .++.++. ...|++||+
T Consensus 88 ~~~~~~~g------~~~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 88 WVADLETL------SSKK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp EEEETTTT------EEEE-EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred EEEECCCC------ceEE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 67777543 2222 222233 8888998655 4665543 257999999
Q ss_pred CCCceeEEeeccccCCeEEEEECCCCCEEEEEECCC---------eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEE
Q psy8748 1811 ETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK---------SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAF 1881 (2004)
Q Consensus 1811 ~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG---------sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~L 1881 (2004)
.+++....+.. . .+..++|+|+| +++++..++ .|.++| +++. ..+..+ ..+..+ +|+|+++
T Consensus 160 ~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~--spdg~~l 229 (347)
T 2gop_A 160 ESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYAV--DSDGERI 229 (347)
T ss_dssp TTTEEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEEE--EECSSCE
T ss_pred CCCeEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce-EEeccC-cceeeE--CCCCCEE
Confidence 98876334332 3 78899999999 777776542 355555 5543 344344 445444 9999998
Q ss_pred EEEECC--------CeEEEEEccCCceeEEEcCCCCCCCeEE-EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCC
Q psy8748 1882 ATGSED--------KTARLFDIRADQQIATYLPPNKNSGFTS-CAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHE 1952 (2004)
Q Consensus 1882 aSgS~D--------GtIrIWDLrtgk~i~t~~~~~~~s~Its-LafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs 1952 (2004)
+.++.+ +.|.+|| +++.. .+ ...+...+.. +.|+ +| ++++++.+|.+++| +.+++.. .+..+.
T Consensus 230 ~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l-~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~ 301 (347)
T 2gop_A 230 LLYGKPEKKYMSEHNKLYIYD--GKEVM-GI-LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGR 301 (347)
T ss_dssp EEEECCSSSCCCSSCEEEEEC--SSCEE-ES-STTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSS
T ss_pred EEEEccccCCccccceEEEEC--CCceE-ec-cccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCC
Confidence 887754 3688888 44432 22 2344456775 8999 88 88999999999999 8766554 344457
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeE-EEEECCCCe
Q psy8748 1953 NRVTSISLSPNGMALVTSSWDQFV-KVWQESNTI 1985 (2004)
Q Consensus 1953 ~~VtsLaFSPDg~~LaSgS~DGtI-rIWdlstg~ 1985 (2004)
+.|.+++|++ .++++++.++.. .+|.++ ++
T Consensus 302 ~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 302 HWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp SEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred CeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 8899999999 677777777765 788877 54
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.50 E-value=4.2e-12 Score=149.57 Aligned_cols=236 Identities=12% Similarity=0.090 Sum_probs=166.5
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC----CeEEEEEcC
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD----NMCTVYDLN 1764 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D----GtIrVWDl~ 1764 (2004)
.++...+.+++|+++|++++++..++.|.+||..+++.......+...+.+++|+++|++++++..+ +.|.+|+.+
T Consensus 41 ~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 120 (333)
T ss_dssp ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC
Confidence 3455567899999999988888889999999998887766554566789999999999988877666 689999987
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec-------CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG-------DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~-------DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~ 1837 (2004)
++.. ............+..+.+.+++.+++++. .+.|..||..+++.. .+ ......+..++|+|+++
T Consensus 121 ~~~~----~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 121 GDNL----QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PI-IQNISVANGIALSTDEK 194 (333)
T ss_dssp SCSC----EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EE-EEEESSEEEEEECTTSS
T ss_pred CCEE----EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-Ee-ecCCCcccceEECCCCC
Confidence 5431 11111112345677888887777766655 366777777655443 22 12334578999999998
Q ss_pred EEEEE-ECCCeEEEEECCC-CeEEEE--------EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC
Q psy8748 1838 YFVTG-SVDKSCKLWDFRE-KKCVQT--------FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP 1907 (2004)
Q Consensus 1838 ~LaSG-S~DGsIrIWDlrs-~k~I~t--------l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~ 1907 (2004)
.++++ +.++.|.+||... +..... +.++ ..+.+++++++|+++++...++.|.+||. +++....+..+
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~ 272 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 272 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence 66655 4578999999863 332211 1111 46788999999998888777899999998 46666666433
Q ss_pred CC----CCCeEEEEEcCCCCEEEEEeCCC
Q psy8748 1908 NK----NSGFTSCAVSSSGRYIFCGSDDN 1932 (2004)
Q Consensus 1908 ~~----~s~ItsLafSPdG~~LaSGSsDG 1932 (2004)
.. ...+.+++|+++++.|++++.+|
T Consensus 273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCccccccCcceEEECCCCCEEEEEeCcc
Confidence 21 11578899999988887766653
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.49 E-value=1.1e-11 Score=146.43 Aligned_cols=231 Identities=12% Similarity=0.158 Sum_probs=157.3
Q ss_pred ceeEEEEeCCCCEEEEEeCC---C--eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC-------------
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLD---G--KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD------------- 1755 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~D---G--tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D------------- 1755 (2004)
.+.+++|||||++|+.++.+ + .|++||+.+++.......+ . +.++.|+|+|+.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 56789999999999887654 3 4888898888766555443 3 9999999999988887642
Q ss_pred --------------CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC---------CeEEEEECCC
Q psy8748 1756 --------------NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD---------MKIVTWNLET 1812 (2004)
Q Consensus 1756 --------------GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D---------GtI~IWDl~t 1812 (2004)
..|.+|++.+++ ....+.. . .+..+.|++++.++++..+ ..|+++| +
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~------~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~ 207 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEE------VIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--D 207 (347)
T ss_dssp CCC---------CEEEEEEEETTTTE------EEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--T
T ss_pred ceeecCcccccCccceEEEEECCCCe------EEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--C
Confidence 578889987542 2122222 2 6778888877744445433 2455556 4
Q ss_pred CceeEEeeccccCCeEEEEECCCCCEEEEEECC--------CeEEEEECCCCeEEEEEecCCCCeEE-EEEeCCCCEEEE
Q psy8748 1813 GQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD--------KSCKLWDFREKKCVQTFFGHEADVNS-VCFHPSGLAFAT 1883 (2004)
Q Consensus 1813 g~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D--------GsIrIWDlrs~k~I~tl~~h~s~Its-IafSPdg~~LaS 1883 (2004)
++. ..+. .+ ..+..+ +|+|++++.++.+ +.|.+|| +++.......+...+.. +.|+ ++ ++++
T Consensus 208 ~~~-~~l~-~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~ 278 (347)
T 2gop_A 208 GKE-EKMF-EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFT 278 (347)
T ss_dssp TEE-EEEE-EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEE
T ss_pred Cce-EEec-cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEE
Confidence 443 2332 23 445544 8999988887754 3688888 55544444455677886 8999 88 8889
Q ss_pred EECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeE-EEEECCCCeeeEEEccCCC
Q psy8748 1884 GSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNV-HVWDLLKTTHNGVLSGHEN 1953 (2004)
Q Consensus 1884 gS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsI-rIWDL~tge~l~tL~gHs~ 1953 (2004)
++.+|.+++| +.+++..... .....+.+++|++ .++++++.++.. .+|.+. ++ ...+..|..
T Consensus 279 ~~~~~~~~l~-~~~g~~~~~~---~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 279 LFEEGSVNLY-IWDGEIKPIA---KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp EEETTEEEEE-EESSSEEEEE---CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred EecCCcEEEE-EcCCceEEEe---cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 9999999999 8866553333 2246788999999 677777777654 777765 44 444555544
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.48 E-value=1.1e-11 Score=147.99 Aligned_cols=266 Identities=11% Similarity=0.045 Sum_probs=190.4
Q ss_pred CCCeEEEEECCCCceEEEee------CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccce
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIP------LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL 1785 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~------~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~V 1785 (2004)
.++.|.+||..+++....+. .......++++. +++.+++...++.|.+||..+++ ....+. .....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~------~~~~i~-~~~~p 86 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK------EVGRIT-GFTSP 86 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC------EEEEEE-CCSSE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccE------EEEEcC-CCCCC
Confidence 37899999999998765441 122346778774 45566666678999999998653 333333 23556
Q ss_pred eeeEEeCCCcEEEee-cCCeEEEEECCCCceeEEeecccc----CCeEEEEECCCCCEEEEEE--CCCeEEEEECCCCeE
Q psy8748 1786 SSCRFIDDTTLLTGS-GDMKIVTWNLETGQRIHEVAQAHI----GDVVSISLSPDGQYFVTGS--VDKSCKLWDFREKKC 1858 (2004)
Q Consensus 1786 ssvafsdd~~LlSgS-~DGtI~IWDl~tg~~i~~il~~h~----~~ItsLafSPdg~~LaSGS--~DGsIrIWDlrs~k~ 1858 (2004)
..+++.+++.++++. .++.|.+||..+++....+..+.. .....+++ +++.++++. .++.|.+||..+++.
T Consensus 87 ~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~ 164 (328)
T 3dsm_A 87 RYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV 164 (328)
T ss_dssp EEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE
T ss_pred cEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE
Confidence 778886555777766 789999999999887655533221 14556777 455666665 488999999999988
Q ss_pred EEEEecCCCCeEEEEEeCCCCEEEEEECC----------CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEE
Q psy8748 1859 VQTFFGHEADVNSVCFHPSGLAFATGSED----------KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCG 1928 (2004)
Q Consensus 1859 I~tl~~h~s~ItsIafSPdg~~LaSgS~D----------GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSG 1928 (2004)
+..+.. ......++++|+|++++++..+ +.|.+||..+++....+..+. ......++++|++++++++
T Consensus 165 ~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 165 VDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp EEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEE
T ss_pred EEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEE
Confidence 877754 3446789999999877666554 789999999888776664332 2357899999999999887
Q ss_pred eCCCeEEEEECCCCeeeEE--EccCCCCeEEEEEcC-CCCEEEEE----ECCCeEEEEECCCCeEEEEEEe
Q psy8748 1929 SDDNNVHVWDLLKTTHNGV--LSGHENRVTSISLSP-NGMALVTS----SWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1929 SsDGsIrIWDL~tge~l~t--L~gHs~~VtsLaFSP-Dg~~LaSg----S~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
.. .|.+||..+++.... +..+.....+++++| ++.+.++. ..++.|.+|+.+ ++....+..
T Consensus 243 ~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 243 NN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp SS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred cc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 65 899999988775421 122246789999999 56655665 568999999998 665555543
No 183
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=1.8e-10 Score=132.14 Aligned_cols=279 Identities=11% Similarity=-0.017 Sum_probs=194.4
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE-EeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCC
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQ-VIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS 1768 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~-ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~ 1768 (2004)
.....+.+++++++|+..++...++.|.+||.. ++... .+..+...+.+++++++++.+++...++.|..|+.. +.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~- 93 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG- 93 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC-
Confidence 345688999999999988877778999999987 55443 223334678999999999988887778889999876 32
Q ss_pred CCcceEEEEEecCccceeeeEEeCCCcEEEeec-CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCe
Q psy8748 1769 TGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG-DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847 (2004)
Q Consensus 1769 ~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~-DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGs 1847 (2004)
.. ..........+..+.+.+++.+++++. ++.|..||.. ++............+.+++++++|+..++...++.
T Consensus 94 ---~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 168 (300)
T 2qc5_A 94 ---FT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS 168 (300)
T ss_dssp ---EE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred ---eE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence 11 112222335677777776666555554 7899999987 55542222334567899999999996665555788
Q ss_pred EEEEECCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEE
Q psy8748 1848 CKLWDFREKKCVQT-FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIF 1926 (2004)
Q Consensus 1848 IrIWDlrs~k~I~t-l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~La 1926 (2004)
|..||. +++.... ...+...+.++++.++|+.+++...++.|.+||. +++..... .......+.+++++++|++.+
T Consensus 169 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v 245 (300)
T 2qc5_A 169 IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-IPTPNARPHAITAGKNSEIWF 245 (300)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECSTTCEEE
T ss_pred EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-CCCCCCCceEEEECCCCCEEE
Confidence 999998 5554332 2233456889999999987776666778999998 45443332 233345688999999999776
Q ss_pred EEeCCCeEEEEECCCCeeeE-EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1927 CGSDDNNVHVWDLLKTTHNG-VLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1927 SGSsDGsIrIWDL~tge~l~-tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
+...++.|..||. +++... .+......+.+++++++|.+.++.. . .|..++.+
T Consensus 246 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 246 TEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred eccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 6666789999998 444332 2333456789999999998666554 4 67666653
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.46 E-value=2.5e-11 Score=141.14 Aligned_cols=245 Identities=11% Similarity=0.112 Sum_probs=175.5
Q ss_pred cccccccccceeEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~-~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
...+..+.....+++|+|+|+ +++++..++.|..||..++ ...+..+...+.+++++++|+++++...++.|.+|+.
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 345556677889999999998 7788888999999998877 6667777788999999999998888777789999998
Q ss_pred CCCCCCCcceEEEE-Eec-CccceeeeEEeCCCcEEE-----ee-------------cCCeEEEEECCCCceeEEeeccc
Q psy8748 1764 NNRDSTGAAKVIRE-LLG-YEGFLSSCRFIDDTTLLT-----GS-------------GDMKIVTWNLETGQRIHEVAQAH 1823 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~s-l~g-h~~~Vssvafsdd~~LlS-----gS-------------~DGtI~IWDl~tg~~i~~il~~h 1823 (2004)
.++. ...... ..+ ....+..+++.+++.+++ |+ ..+.|..++.. ++.. . ...+
T Consensus 98 ~~g~----~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~-~~~~ 170 (296)
T 3e5z_A 98 PGGE----WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-A-PIRD 170 (296)
T ss_dssp TTCC----EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-E-EECC
T ss_pred CCCc----EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-E-eecC
Confidence 6543 111111 111 122455677877766666 33 13567777765 4432 2 2345
Q ss_pred cCCeEEEEECCCCCEEEEEECCCeEEEEECC-CCeE---EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVDKSCKLWDFR-EKKC---VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ 1899 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~DGsIrIWDlr-s~k~---I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk 1899 (2004)
......++|+|+++.+++.+.++.|++||+. ++.. ...+..+...+.+++++++|+++++. ++.|.+||.. ++
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD 247 (296)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence 5667899999999988777778999999987 4443 23333345567889999999866555 8899999986 77
Q ss_pred eeEEEcCCCCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1900 QIATYLPPNKNSGFTSCAV-SSSGRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1900 ~i~t~~~~~~~s~ItsLaf-SPdG~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
....+..+. . +.+++| +++++.|++++.+ .+.-++..+.+..
T Consensus 248 ~~~~~~~~~--~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 248 ELGRVLTPQ--T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEEEEECSS--C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EEEEEECCC--C-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 766664333 3 788899 5899999998876 4666676665543
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.45 E-value=3.2e-11 Score=140.32 Aligned_cols=245 Identities=11% Similarity=0.131 Sum_probs=177.2
Q ss_pred CceEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec-
Q psy8748 1724 GNKTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG- 1801 (2004)
Q Consensus 1724 gk~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~- 1801 (2004)
+..+..+..+.....+++|+|+++ .++++..++.|..|+..++ ...+..+...+.++++.+++.++++..
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~l~~~~dg~l~v~~~~ 88 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--------LSPEMHPSHHQNGHCLNKQGHLIACSHG 88 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--------EEEEESSCSSEEEEEECTTCCEEEEETT
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--------eEEEECCCCCcceeeECCCCcEEEEecC
Confidence 344455556667788999999998 7888888999999998642 334445667788899987776666654
Q ss_pred CCeEEEEECCCCceeEEee--c-cccCCeEEEEECCCCCEEEE----EE-------------CCCeEEEEECCCCeEEEE
Q psy8748 1802 DMKIVTWNLETGQRIHEVA--Q-AHIGDVVSISLSPDGQYFVT----GS-------------VDKSCKLWDFREKKCVQT 1861 (2004)
Q Consensus 1802 DGtI~IWDl~tg~~i~~il--~-~h~~~ItsLafSPdg~~LaS----GS-------------~DGsIrIWDlrs~k~I~t 1861 (2004)
++.|.+||..+++...... . .....+..++++|+|+++++ |+ ..+.|..++.. ++ ...
T Consensus 89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~ 166 (296)
T 3e5z_A 89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSA 166 (296)
T ss_dssp TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEE
T ss_pred CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEE
Confidence 5899999998887542221 1 11234678999999998776 32 13466667665 44 344
Q ss_pred EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEcc-CCce---eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy8748 1862 FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR-ADQQ---IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVW 1937 (2004)
Q Consensus 1862 l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLr-tgk~---i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIW 1937 (2004)
+..+......++|+|+++.+++.+.++.|.+||+. ++.. ...+ ......+..++++++|+++++. ++.|.+|
T Consensus 167 ~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 167 PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 45666778999999999988777778999999997 4544 2333 2234456789999999976665 8899999
Q ss_pred ECCCCeeeEEEccCCCCeEEEEE-cCCCCEEEEEECCCeEEEEECCCCe
Q psy8748 1938 DLLKTTHNGVLSGHENRVTSISL-SPNGMALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1938 DL~tge~l~tL~gHs~~VtsLaF-SPDg~~LaSgS~DGtIrIWdlstg~ 1985 (2004)
|.. ++.+..+..+.. +++++| .++++.|++++.+| +.-++..+..
T Consensus 243 ~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp CTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred CCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence 985 778888877777 999999 58999999988764 5555666643
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.45 E-value=2.4e-11 Score=159.59 Aligned_cols=276 Identities=12% Similarity=0.096 Sum_probs=189.0
Q ss_pred CCCCEEEEEeCC-----CeEEEEECCCCceEEEee------CCCCceEEEEEecCCCEEEEeecCC-----eEEEEEcCC
Q psy8748 1702 GDSRHCVSGSLD-----GKLIIWDTWTGNKTQVIP------LRSAWVMSVAFAQSGNFVACGGMDN-----MCTVYDLNN 1765 (2004)
Q Consensus 1702 PDG~~LASGS~D-----GtIrVWDl~Tgk~l~ti~------~Ht~~ItsLafSPdg~~LaSGS~DG-----tIrVWDl~t 1765 (2004)
|+|++++....+ +.+++.+...++....+. +|...+.+++|+|||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 778876654332 234555544454332221 2444688999999999998776543 899999987
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCe----------------EEEEECCCCceeE-Eeec--cccC
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMK----------------IVTWNLETGQRIH-EVAQ--AHIG 1825 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGt----------------I~IWDl~tg~~i~-~il~--~h~~ 1825 (2004)
++ ....... ...+..+.|+++ ..|+.++.++. |++|++.+++... .+.. .+..
T Consensus 161 g~------~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~ 233 (710)
T 2xdw_A 161 AK------ELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPK 233 (710)
T ss_dssp TE------EEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred CC------CCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCe
Confidence 53 1111111 122567889855 45777776655 9999998876321 1222 2445
Q ss_pred CeEEEEECCCCCEEEEEEC-----CCeEEEEECCC------Ce-EEEEEecCCCCeEEEEEeCCCCEEEEEECC----Ce
Q psy8748 1826 DVVSISLSPDGQYFVTGSV-----DKSCKLWDFRE------KK-CVQTFFGHEADVNSVCFHPSGLAFATGSED----KT 1889 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSGS~-----DGsIrIWDlrs------~k-~I~tl~~h~s~ItsIafSPdg~~LaSgS~D----Gt 1889 (2004)
.+..+.|+|||++|+.++. +..|++||+.+ +. ....+..+...+.. .|+++|+.|+..+.+ +.
T Consensus 234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~ 312 (710)
T 2xdw_A 234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR 312 (710)
T ss_dssp CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE
T ss_pred EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE
Confidence 5789999999999988775 56899999976 42 34556666666655 488899887776653 36
Q ss_pred EEEEEccCCce--eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCe--EEEEECCCCeeeEEEccCCCCeEEEEEcCCCC
Q psy8748 1890 ARLFDIRADQQ--IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNN--VHVWDLLKTTHNGVLSGHENRVTSISLSPNGM 1965 (2004)
Q Consensus 1890 IrIWDLrtgk~--i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGs--IrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~ 1965 (2004)
|.+||+.++.. ...+..+.....+..++|++++.+++++..+|. |++||+.+++....+..+.+.|..++++|++.
T Consensus 313 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~ 392 (710)
T 2xdw_A 313 LINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT 392 (710)
T ss_dssp EEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred EEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCC
Confidence 99999987642 233333322235778899888888888888884 66778778887788888888899999999987
Q ss_pred EEEEE-E---CCCeEEEEECCCCe
Q psy8748 1966 ALVTS-S---WDQFVKVWQESNTI 1985 (2004)
Q Consensus 1966 ~LaSg-S---~DGtIrIWdlstg~ 1985 (2004)
.++.. + ..+.|+.||+.+++
T Consensus 393 ~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 393 EIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEeCCCCCCEEEEEECCCCc
Confidence 66543 2 34789999998876
No 187
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.42 E-value=4.1e-11 Score=142.65 Aligned_cols=200 Identities=12% Similarity=0.148 Sum_probs=147.7
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc-eEEEe---------eCCCCceEEEEEec-CCCEEEEee-cCCe
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN-KTQVI---------PLRSAWVMSVAFAQ-SGNFVACGG-MDNM 1757 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk-~l~ti---------~~Ht~~ItsLafSP-dg~~LaSGS-~DGt 1757 (2004)
++......++++++|+++++...++.|++||..... .+..+ ..+-....+++++| +++.+++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 344578899999999988888889999999975442 45555 23445689999999 788888886 6899
Q ss_pred EEEEEcCCCCCCCcceEEEEEec----------CccceeeeEEeCC-Cc-EEEeecCCeEEEEECCCCceeEEee-cccc
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLG----------YEGFLSSCRFIDD-TT-LLTGSGDMKIVTWNLETGQRIHEVA-QAHI 1824 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~g----------h~~~Vssvafsdd-~~-LlSgS~DGtI~IWDl~tg~~i~~il-~~h~ 1824 (2004)
|++|+.+. .....+.. +-.....+++.++ +. +++...++.|++||..+++.+..+. ..+.
T Consensus 168 I~~~~~~g-------~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~ 240 (329)
T 3fvz_A 168 IVQFSPSG-------KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG 240 (329)
T ss_dssp EEEECTTS-------CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT
T ss_pred EEEEcCCC-------CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC
Confidence 99999532 22222211 1233678888765 55 5555678899999999888775553 3455
Q ss_pred CCeEEEEECCCCCEEEEE-------ECCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q psy8748 1825 GDVVSISLSPDGQYFVTG-------SVDKSCKLWDFREKKCVQTFF---GHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894 (2004)
Q Consensus 1825 ~~ItsLafSPdg~~LaSG-------S~DGsIrIWDlrs~k~I~tl~---~h~s~ItsIafSPdg~~LaSgS~DGtIrIWD 1894 (2004)
..+.+++++| +..+.+. ..++.|++||..+++.+..+. ++...+.+++++|+|..+++...++.|++|+
T Consensus 241 ~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 241 RNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp TCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred CCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 6788999999 3333332 334589999999999888873 5667789999999998888888899999999
Q ss_pred ccC
Q psy8748 1895 IRA 1897 (2004)
Q Consensus 1895 Lrt 1897 (2004)
+..
T Consensus 320 ~~~ 322 (329)
T 3fvz_A 320 LTE 322 (329)
T ss_dssp EEE
T ss_pred CCc
Confidence 763
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.41 E-value=1.5e-09 Score=124.49 Aligned_cols=237 Identities=11% Similarity=0.014 Sum_probs=164.2
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE-EeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQ-VIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~-ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
..+.+++++++|.++++...++.|..||.. ++... ........+.+++++++++.+++...++.|..|+. ++.
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~---- 130 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK---- 130 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC----
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC----
Confidence 467899999999988887778899999975 44322 22234567899999999998888777889999987 321
Q ss_pred ceEEEEEecCccceeeeEEeCCCcEEEee-cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEE
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTTLLTGS-GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~LlSgS-~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrI 1850 (2004)
.. ..........+..+.+.+++.+++++ .++.|..||. +++............+.+++++++|+..++...++.|.+
T Consensus 131 ~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 208 (299)
T 2z2n_A 131 IR-EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGR 208 (299)
T ss_dssp EE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred EE-EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEE
Confidence 11 11122234557778887666666554 5689999999 666543223334556889999999986666656789999
Q ss_pred EECCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1851 WDFREKKCVQT-FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1851 WDlrs~k~I~t-l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
||. +++.... ...+...+.+++++++|+.+++...++.|..||. ++. ...+........+.++++ ++|++.++..
T Consensus 209 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~ 284 (299)
T 2z2n_A 209 ITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME 284 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET
T ss_pred ECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec
Confidence 998 6654322 2234567899999999986666557789999998 443 334433344456889999 8888766654
Q ss_pred CCCeEEEEECCCC
Q psy8748 1930 DDNNVHVWDLLKT 1942 (2004)
Q Consensus 1930 sDGsIrIWDL~tg 1942 (2004)
.+.+..++..++
T Consensus 285 -~~~l~~~~~~~~ 296 (299)
T 2z2n_A 285 -CDKIGKLTLIKD 296 (299)
T ss_dssp -TTEEEEEEEC--
T ss_pred -CCcEEEEEcCcc
Confidence 667777776554
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.40 E-value=3.4e-11 Score=136.97 Aligned_cols=241 Identities=12% Similarity=0.042 Sum_probs=171.4
Q ss_pred ceEEEEEecCCCEEE-EeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCc
Q psy8748 1736 WVMSVAFAQSGNFVA-CGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQ 1814 (2004)
Q Consensus 1736 ~ItsLafSPdg~~La-SGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~ 1814 (2004)
...+++++++|+.++ +.+.++.|.+|+..+.. ...........+.++++.+++.++++..++.|..||...+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG------TTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----------EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc------cceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCce
Confidence 678999999999777 55778899999875431 11111122345677888766666666668899999987654
Q ss_pred eeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q psy8748 1815 RIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894 (2004)
Q Consensus 1815 ~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWD 1894 (2004)
.. .........+.+++++++|+.+++...++.|.+|+..+.............+.+++++++|+.+++...++.|.+||
T Consensus 99 ~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 99 QT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp CE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred Ee-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 43 22223335689999999998777766788999998765543332223334678999999998777776788999999
Q ss_pred ccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCC
Q psy8748 1895 IRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQ 1974 (2004)
Q Consensus 1895 Lrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DG 1974 (2004)
.......... ......+..++++++|+++++...++.|.+||............+...+.+++++++|+++++...++
T Consensus 178 ~~~~~~~~~~--~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 178 AESNNQVVLP--FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp TTTCCEEECC--CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred cCCCceEeec--ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCC
Confidence 8766543322 22225688999999998777777788999999866544332223446789999999999888888899
Q ss_pred eEEEEECCCCe
Q psy8748 1975 FVKVWQESNTI 1985 (2004)
Q Consensus 1975 tIrIWdlstg~ 1985 (2004)
.|++|+....+
T Consensus 256 ~v~~~~~~~~~ 266 (270)
T 1rwi_B 256 RVVKLTSLEHH 266 (270)
T ss_dssp EEEEECCCGGG
T ss_pred EEEEEcCCCcc
Confidence 99999988754
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.40 E-value=3.7e-11 Score=157.89 Aligned_cols=247 Identities=11% Similarity=0.078 Sum_probs=171.9
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCC-----eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCe-------
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDG-----KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNM------- 1757 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DG-----tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGt------- 1757 (2004)
+|...+..++|||||++||.+..++ .|++||+.+|+.......+ ..+.+++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3555789999999999998776543 8999999999876643222 22677999999999999887765
Q ss_pred ---------EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEeec-----CCeEEEEECCC------Cc-e
Q psy8748 1758 ---------CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGSG-----DMKIVTWNLET------GQ-R 1815 (2004)
Q Consensus 1758 ---------IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~-----DGtI~IWDl~t------g~-~ 1815 (2004)
|++|++.++.. ....+.....+...+..+.|++++. ++.++. +..|++||+.+ +. .
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~--~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQS--EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred ccccCCCCEEEEEECCCCcc--cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence 99999976431 1112222223445567788886654 555443 57899999986 43 2
Q ss_pred eEEeeccccCCeEEEEECCCCCEEEEEECCC----eEEEEECCCCe--EEEEEecCCC--CeEEEEEeCCCCEEEEEECC
Q psy8748 1816 IHEVAQAHIGDVVSISLSPDGQYFVTGSVDK----SCKLWDFREKK--CVQTFFGHEA--DVNSVCFHPSGLAFATGSED 1887 (2004)
Q Consensus 1816 i~~il~~h~~~ItsLafSPdg~~LaSGS~DG----sIrIWDlrs~k--~I~tl~~h~s--~ItsIafSPdg~~LaSgS~D 1887 (2004)
...+ ..+...+.. .|+++|+.|+..+.++ .|.+||+.++. ....+..+.. .+..++|++++.++++...|
T Consensus 279 ~~~l-~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 279 WVKL-IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp CEEE-ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred eEEe-eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 3233 344445544 4888999888776543 69999998764 1234444543 68889999888788888888
Q ss_pred Ce--EEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC----CCeEEEEECCCCe
Q psy8748 1888 KT--ARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD----DNNVHVWDLLKTT 1943 (2004)
Q Consensus 1888 Gt--IrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs----DGsIrIWDL~tge 1943 (2004)
|. |.+||+.+++....+..+ ...+..++++|+++.++.... .++|+.||+.+++
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 85 566777677766666433 466888999999987664432 4789999998876
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.39 E-value=1.1e-10 Score=139.32 Aligned_cols=252 Identities=9% Similarity=-0.050 Sum_probs=178.3
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcce
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k 1773 (2004)
....+++. +++.+++...++.|.+||..+++.+..+.. ......+++++++..+++...++.|.+||..++ +
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~------~ 116 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY------E 116 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT------E
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC------e
Confidence 45677774 345555666679999999999999888864 456889999999855555547899999998764 2
Q ss_pred EEEEEecCc-----cceeeeEEeCCCcEEEee--cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC-
Q psy8748 1774 VIRELLGYE-----GFLSSCRFIDDTTLLTGS--GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD- 1845 (2004)
Q Consensus 1774 ~i~sl~gh~-----~~Vssvafsdd~~LlSgS--~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D- 1845 (2004)
....+.... .....+++ +++.++++. .++.|.+||..+++....+.. ......++++++|++++++..+
T Consensus 117 ~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~ 193 (328)
T 3dsm_A 117 ITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGY 193 (328)
T ss_dssp EEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBC
T ss_pred EEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc--CCCccceEEcCCCCEEEEECCCc
Confidence 333333222 14455666 556666665 489999999999987765532 3345788999999876666544
Q ss_pred ---------CeEEEEECCCCeEEEEEecC-CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEE
Q psy8748 1846 ---------KSCKLWDFREKKCVQTFFGH-EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTS 1915 (2004)
Q Consensus 1846 ---------GsIrIWDlrs~k~I~tl~~h-~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~Its 1915 (2004)
+.|.+||..+++....+... ......++|+|+++.++++.. .|.+||..+++................
T Consensus 194 ~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~g 271 (328)
T 3dsm_A 194 EGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYG 271 (328)
T ss_dssp TTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEE
T ss_pred cCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEE
Confidence 78999999999877666532 346899999999999888754 899999988775321111111356789
Q ss_pred EEEcC-CCCEEEEE----eCCCeEEEEECCCCeeeEEEccCCCCeEEEEE
Q psy8748 1916 CAVSS-SGRYIFCG----SDDNNVHVWDLLKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1916 LafSP-dG~~LaSG----SsDGsIrIWDL~tge~l~tL~gHs~~VtsLaF 1960 (2004)
++++| +++++++. ..++.|.+||.. ++.+..+.. ......++|
T Consensus 272 i~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 272 LTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp EEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred EEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEE
Confidence 99999 55555555 568899999987 888877753 233455555
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.37 E-value=3.9e-11 Score=157.42 Aligned_cols=279 Identities=11% Similarity=0.003 Sum_probs=184.6
Q ss_pred CCCCEEEEEeCCC-----eEEEEECCCCceEEEee------CCCCceEEEEEecCCCEEEE-----eecCCeEEEEEcCC
Q psy8748 1702 GDSRHCVSGSLDG-----KLIIWDTWTGNKTQVIP------LRSAWVMSVAFAQSGNFVAC-----GGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1702 PDG~~LASGS~DG-----tIrVWDl~Tgk~l~ti~------~Ht~~ItsLafSPdg~~LaS-----GS~DGtIrVWDl~t 1765 (2004)
|+|++++....++ .|.+.+...++....+. +|...+.++.|+|||++|+. |+.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 7788877665543 34555554554433332 35557899999999999984 44456899999987
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCe-------------EEEEECCCCceeE-Ee--eccccCCeE
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMK-------------IVTWNLETGQRIH-EV--AQAHIGDVV 1828 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGt-------------I~IWDl~tg~~i~-~i--l~~h~~~It 1828 (2004)
++.... ..+. ......+.|++++ .++.++.+.. |++|++.++.... .+ ...+...+.
T Consensus 157 g~~~~~----~~~~--~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~ 230 (695)
T 2bkl_A 157 GEWSKV----DVIE--GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL 230 (695)
T ss_dssp CCBCSS----CCBS--CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred CCCcCC----cccC--cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence 642200 0111 1112578888665 5777776655 9999999876321 12 223446788
Q ss_pred EEEECCCCCEEEEEECCC----eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC----CCeEEEEEccCCce
Q psy8748 1829 SISLSPDGQYFVTGSVDK----SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE----DKTARLFDIRADQQ 1900 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS~DG----sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~----DGtIrIWDLrtgk~ 1900 (2004)
++.|+|||++++.++.++ .|++||..++.. ..+..+...+....+ ++|. ++..+. ++.|.+||+.++..
T Consensus 231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~ 307 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPAR 307 (695)
T ss_dssp EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSG
T ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCc
Confidence 999999999998887666 688887655543 444455556666666 5666 544443 57899999987653
Q ss_pred --eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEEccC-CCCeEEEEEcCCCCEEEEEE----C
Q psy8748 1901 --IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL-KTTHNGVLSGH-ENRVTSISLSPNGMALVTSS----W 1972 (2004)
Q Consensus 1901 --i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~-tge~l~tL~gH-s~~VtsLaFSPDg~~LaSgS----~ 1972 (2004)
...+........+..++++ ++.+++++..||..++|.+. ++.....+..+ .+.|..+++++++..++... .
T Consensus 308 ~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 386 (695)
T 2bkl_A 308 ASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTT 386 (695)
T ss_dssp GGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTE
T ss_pred cCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 2333333324457788888 77788888899988887654 45556666655 66788889999998776332 3
Q ss_pred CCeEEEEECCCCeEEEEEE
Q psy8748 1973 DQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1973 DGtIrIWdlstg~l~k~Ik 1991 (2004)
.++|++||+.+++. +.++
T Consensus 387 P~~v~~~d~~~g~~-~~l~ 404 (695)
T 2bkl_A 387 PRQIYKTSVSTGKS-ELWA 404 (695)
T ss_dssp EEEEEEEETTTCCE-EEEE
T ss_pred CCEEEEEECCCCcE-EEEe
Confidence 57899999998763 4443
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.37 E-value=1.3e-11 Score=161.80 Aligned_cols=196 Identities=9% Similarity=-0.008 Sum_probs=135.3
Q ss_pred eEEEEeCCCCEEEEEeCCCe-------------EEEEECCCCc----eEEEeeCCCCceEEEEEecCCCEEEEeecCC--
Q psy8748 1696 NSVHYSGDSRHCVSGSLDGK-------------LIIWDTWTGN----KTQVIPLRSAWVMSVAFAQSGNFVACGGMDN-- 1756 (2004)
Q Consensus 1696 tsLaFSPDG~~LASGS~DGt-------------IrVWDl~Tgk----~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG-- 1756 (2004)
..++|+|||+.|+.++.|+. |++|++.++. .+.....+...+.++.|+|||++|+.++.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 46899999999999988776 9999998876 2223334556789999999999988877665
Q ss_pred --eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec----CCeEEEEECCCCce--eEEeeccc-cCCe
Q psy8748 1757 --MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG----DMKIVTWNLETGQR--IHEVAQAH-IGDV 1827 (2004)
Q Consensus 1757 --tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~----DGtI~IWDl~tg~~--i~~il~~h-~~~I 1827 (2004)
.|.+|+..++ . ...+..+........+.+++ ++..+. ++.|.+||+.++.. ...+...+ ...+
T Consensus 251 ~~~l~~~~~~~~----~---~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l 322 (695)
T 2bkl_A 251 ENDVYWKRPGEK----D---FRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL 322 (695)
T ss_dssp EEEEEEECTTCS----S---CEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred ceEEEEEcCCCC----c---eEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence 5555543322 1 22233344444555556666 555543 58999999987753 22333333 4457
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECC-CCeEEEEEecC-CCCeEEEEEeCCCCEEEEEEC----CCeEEEEEccCCce
Q psy8748 1828 VSISLSPDGQYFVTGSVDKSCKLWDFR-EKKCVQTFFGH-EADVNSVCFHPSGLAFATGSE----DKTARLFDIRADQQ 1900 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS~DGsIrIWDlr-s~k~I~tl~~h-~s~ItsIafSPdg~~LaSgS~----DGtIrIWDLrtgk~ 1900 (2004)
..++|+ ++.++++...||..++|.+. +++....+..+ ...+..+.++|+++.++.... .++|++||+.+++.
T Consensus 323 ~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 323 LSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 888888 67788888889988877654 35555556544 567788889999887664432 46899999988764
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.36 E-value=5.6e-10 Score=143.94 Aligned_cols=274 Identities=15% Similarity=0.073 Sum_probs=197.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecC
Q psy8748 1702 GDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY 1781 (2004)
Q Consensus 1702 PDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh 1781 (2004)
+.+.++++...++.|.+||..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+... ..+....+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~----t~~~v~~i~~- 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMK----EPTTVAEIKI- 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSS----SCCEEEEEEC-
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCC----CCcEeEEEec-
Confidence 445567788889999999999999998887543 4679999999999999999999999999511 1233344443
Q ss_pred ccceeeeEEe-----CCCcEEEee-cCCeEEEEECCCCceeEEeecc---------c-cCCeEEEEECCCCCEEEEE-EC
Q psy8748 1782 EGFLSSCRFI-----DDTTLLTGS-GDMKIVTWNLETGQRIHEVAQA---------H-IGDVVSISLSPDGQYFVTG-SV 1844 (2004)
Q Consensus 1782 ~~~Vssvafs-----dd~~LlSgS-~DGtI~IWDl~tg~~i~~il~~---------h-~~~ItsLafSPdg~~LaSG-S~ 1844 (2004)
......+.++ ++.+++++. .++.|.++|..+.+.+..+... | ...+..+..++++..+++. ..
T Consensus 239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 2335677888 455555544 5699999999998887665321 1 1257888889887655544 45
Q ss_pred CCeEEEEECCCCeEE--EEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcC-C--CCC-CCeEEEE
Q psy8748 1845 DKSCKLWDFREKKCV--QTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLP-P--NKN-SGFTSCA 1917 (2004)
Q Consensus 1845 DGsIrIWDlrs~k~I--~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~-~--~~~-s~ItsLa 1917 (2004)
+|.|.++|..+.+.. ..+ .......++.|+|+|++++++. .+++|.++|+.+++....... . .|. ..+. +
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~- 395 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-F- 395 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-E-
T ss_pred CCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-e-
Confidence 699999998875432 222 3345677899999999987766 578999999999988776643 1 122 1222 2
Q ss_pred EcCCCCEE-EEEe-CCCeEEEEECCC-------CeeeEEEccCCCCeEEEEEcCCCCEEEEEEC-------CCeEEEEEC
Q psy8748 1918 VSSSGRYI-FCGS-DDNNVHVWDLLK-------TTHNGVLSGHENRVTSISLSPNGMALVTSSW-------DQFVKVWQE 1981 (2004)
Q Consensus 1918 fSPdG~~L-aSGS-sDGsIrIWDL~t-------ge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~-------DGtIrIWdl 1981 (2004)
++|++..+ +++. .++.|.++|..+ ++.+..+......-..+..+|+++++.+... .+.|.+||+
T Consensus 396 ~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 396 VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence 68875544 4443 468999999987 6788888765444455778999999998763 358999999
Q ss_pred CCC
Q psy8748 1982 SNT 1984 (2004)
Q Consensus 1982 stg 1984 (2004)
.+.
T Consensus 476 ~~~ 478 (567)
T 1qks_A 476 KAM 478 (567)
T ss_dssp GGC
T ss_pred Ccc
Confidence 865
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.35 E-value=8.3e-11 Score=133.82 Aligned_cols=239 Identities=11% Similarity=0.072 Sum_probs=166.2
Q ss_pred ceeEEEEeCCCCEEE-EEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1694 KVNSVHYSGDSRHCV-SGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LA-SGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
...+++++++|++++ +.+.++.|.+||..++........+...+.+++++++|+.+++.. ++.|.+|+.+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~---- 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ---- 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC----
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE----
Confidence 778999999999777 546789999999765543322223335678999999999666665 88999999765321
Q ss_pred eEEEEEe-cCccceeeeEEeCCCcEEEe-ecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEE
Q psy8748 1773 KVIRELL-GYEGFLSSCRFIDDTTLLTG-SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1773 k~i~sl~-gh~~~Vssvafsdd~~LlSg-S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrI 1850 (2004)
.... ........+++.+++.++++ ..++.|.+|+..+...... .......+.+++++++|+.+++...++.|.+
T Consensus 100 ---~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 100 ---TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp ---EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-CCCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred ---eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-ccccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 1111 22245677888766555554 5678999998665543321 1223346788999999986666666789999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1851 WDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1851 WDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
||............+...+.+++++++|..+++...++.|.+||........ . .......+..++++++|+++++...
T Consensus 176 ~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~-~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 176 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-L-PFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-C-CCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred EecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-e-ccCCCCCceeEEECCCCCEEEEECC
Confidence 9988766444333333678999999999777777678899999987544332 2 2222356889999999998888888
Q ss_pred CCeEEEEECCCCe
Q psy8748 1931 DNNVHVWDLLKTT 1943 (2004)
Q Consensus 1931 DGsIrIWDL~tge 1943 (2004)
++.|++|+....+
T Consensus 254 ~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 254 NDRVVKLTSLEHH 266 (270)
T ss_dssp GTEEEEECCCGGG
T ss_pred CCEEEEEcCCCcc
Confidence 9999999986544
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.31 E-value=3.2e-09 Score=129.85 Aligned_cols=273 Identities=12% Similarity=0.006 Sum_probs=186.0
Q ss_pred eCCCCEEEEEeC--CC---eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee----------cCCeEEEEEcCC
Q psy8748 1701 SGDSRHCVSGSL--DG---KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG----------MDNMCTVYDLNN 1765 (2004)
Q Consensus 1701 SPDG~~LASGS~--DG---tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS----------~DGtIrVWDl~t 1765 (2004)
.|+++++++... .+ .|.+||..+++.+..+.....+ .++++|||++++++. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 467776666543 22 8899999999998888765554 999999999998886 367899999975
Q ss_pred CCCCCcceEEEEEecC-------ccceeeeEEeCC-CcEEEeec--CCeEEEEECCCCceeEE-eeccccCCeEEEEECC
Q psy8748 1766 RDSTGAAKVIRELLGY-------EGFLSSCRFIDD-TTLLTGSG--DMKIVTWNLETGQRIHE-VAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh-------~~~Vssvafsdd-~~LlSgS~--DGtI~IWDl~tg~~i~~-il~~h~~~ItsLafSP 1834 (2004)
.+ ....+.-. ......+.++++ .+++++.. ++.|.++| .+++.... +. ..+ ++.+.|
T Consensus 107 ~~------~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~--~~~---~~~~~~ 174 (373)
T 2mad_H 107 FL------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS--SPT---CYHIHP 174 (373)
T ss_pred Cc------EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--CCc---eEEEEe
Confidence 43 22222111 123446777755 45666653 57899999 99887755 32 111 244555
Q ss_pred CC-CEEEEEECCCeEEEEECCCCeEEEEEe-----cCCCCe-EEEEEeCCCCEEEEEECCCeEEEEEccCCce--eEEEc
Q psy8748 1835 DG-QYFVTGSVDKSCKLWDFREKKCVQTFF-----GHEADV-NSVCFHPSGLAFATGSEDKTARLFDIRADQQ--IATYL 1905 (2004)
Q Consensus 1835 dg-~~LaSGS~DGsIrIWDlrs~k~I~tl~-----~h~s~I-tsIafSPdg~~LaSgS~DGtIrIWDLrtgk~--i~t~~ 1905 (2004)
++ +.+++.+.||.+.++|. +++.+.... ....++ ....+.+++..++..+.++.+.+.|+.++.. ...+.
T Consensus 175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~ 253 (373)
T 2mad_H 175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID 253 (373)
T ss_pred CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeee
Confidence 54 45667778999999999 777653322 111221 2345667666555555788999999875532 22221
Q ss_pred CCC--------CCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC-E
Q psy8748 1906 PPN--------KNSGFTSCAVSSSGRYIFCGSD----------DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM-A 1966 (2004)
Q Consensus 1906 ~~~--------~~s~ItsLafSPdG~~LaSGSs----------DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~-~ 1966 (2004)
... .......+.++++++.++++.. .+.|.++|+.+++.+..+.. .....+++|+|||+ .
T Consensus 254 ~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~ 332 (373)
T 2mad_H 254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPD 332 (373)
T ss_pred ecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeE
Confidence 100 1123445789999998888654 35799999999999988853 44689999999999 7
Q ss_pred EEEEE-CCCeEEEEECCCCeEEEE
Q psy8748 1967 LVTSS-WDQFVKVWQESNTIVWKV 1989 (2004)
Q Consensus 1967 LaSgS-~DGtIrIWdlstg~l~k~ 1989 (2004)
++++. .++.|.+||..+++..+.
T Consensus 333 l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 333 LYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEcCCCCeEEEEECCCCCEEee
Confidence 88877 489999999999876655
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.30 E-value=6.5e-10 Score=130.30 Aligned_cols=214 Identities=11% Similarity=0.033 Sum_probs=168.5
Q ss_pred CCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCc-cceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccc
Q psy8748 1745 SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYE-GFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAH 1823 (2004)
Q Consensus 1745 dg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~-~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h 1823 (2004)
.++.|++++.++.|.+||.+++ +....+..+. ..+.++.+.+++.+++ +.++.|..||. +++.+.++....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG------~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK------EIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPA 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT------EEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCT
T ss_pred CCcEEEeeCCCCEEEEEECCCC------eEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCC
Confidence 4688999999999999998665 4445555444 4567778877777666 56788999999 788887765433
Q ss_pred cCCeEEEEECCCCCEEEEEEC-CCeEEEEECCCCeEEEEEec------CCCCeEEEEEeCCCCEEEEEECCCeEEEEEcc
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSV-DKSCKLWDFREKKCVQTFFG------HEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~-DGsIrIWDlrs~k~I~tl~~------h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLr 1896 (2004)
...+.++.+.++|+.+++.+. ++.|..+|. +++.+..+.. +......+++.++|+++++...++.|..||..
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 457889999999999999887 788888885 6777766642 22245567889999999999999999999998
Q ss_pred CCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCC------CCeEEEEEcCCCCEEEEE
Q psy8748 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHE------NRVTSISLSPNGMALVTS 1970 (2004)
Q Consensus 1897 tgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs------~~VtsLaFSPDg~~LaSg 1970 (2004)
|+.+.++... .....+.+.++|+++++++.++.|..+|..+|+.+..+..+. ..+..+...++|..+++.
T Consensus 155 -G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 155 -GQLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp -SCEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred -CCEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 9999888653 234567888999999999889999999999999999886432 237889999999988887
Q ss_pred E
Q psy8748 1971 S 1971 (2004)
Q Consensus 1971 S 1971 (2004)
.
T Consensus 231 ~ 231 (276)
T 3no2_A 231 W 231 (276)
T ss_dssp E
T ss_pred c
Confidence 4
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.29 E-value=1e-09 Score=127.46 Aligned_cols=244 Identities=12% Similarity=0.174 Sum_probs=171.3
Q ss_pred CCCceEEEEEecCCCEEEE-------eecCCeEEEEEcCCCCCCCcceEEEE--EecCccceeeeEEeCC-CcEEEeecC
Q psy8748 1733 RSAWVMSVAFAQSGNFVAC-------GGMDNMCTVYDLNNRDSTGAAKVIRE--LLGYEGFLSSCRFIDD-TTLLTGSGD 1802 (2004)
Q Consensus 1733 Ht~~ItsLafSPdg~~LaS-------GS~DGtIrVWDl~t~~~~~~~k~i~s--l~gh~~~Vssvafsdd-~~LlSgS~D 1802 (2004)
.-....+++|+++++.+++ +..++.|..|+..+++. ..... ..++...+..+.+.++ +.+++++..
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~----~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~ 91 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK----TVICKPEVNGYGGIPAGCQCDRDANQLFVADMR 91 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE----EEEECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE----EEEEecccCCCCCCCceEEEecCCCcEEEEECC
Confidence 3345689999999988888 67788999999765431 11110 0123456778888877 777777766
Q ss_pred CeEEEEECCCCceeEEe-ecc----ccCCeEEEEECCCCCEEEEEECC---------------CeEEEEECCCCeEEEEE
Q psy8748 1803 MKIVTWNLETGQRIHEV-AQA----HIGDVVSISLSPDGQYFVTGSVD---------------KSCKLWDFREKKCVQTF 1862 (2004)
Q Consensus 1803 GtI~IWDl~tg~~i~~i-l~~----h~~~ItsLafSPdg~~LaSGS~D---------------GsIrIWDlrs~k~I~tl 1862 (2004)
+.|..||.. ++.. .+ ... ....+.+++++++|+++++...+ +.|..||.. ++... +
T Consensus 92 ~~l~~~d~~-g~~~-~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~ 167 (314)
T 1pjx_A 92 LGLLVVQTD-GTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-V 167 (314)
T ss_dssp TEEEEEETT-SCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-E
T ss_pred CCEEEEeCC-CCEE-EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-e
Confidence 689999998 6643 22 111 12357899999999877766554 578888765 54433 3
Q ss_pred ecCCCCeEEEEEe----CCCCEEEEE-ECCCeEEEEEcc-CCcee--EEE-cCCCCC-CCeEEEEEcCCCCEEEEEeCCC
Q psy8748 1863 FGHEADVNSVCFH----PSGLAFATG-SEDKTARLFDIR-ADQQI--ATY-LPPNKN-SGFTSCAVSSSGRYIFCGSDDN 1932 (2004)
Q Consensus 1863 ~~h~s~ItsIafS----Pdg~~LaSg-S~DGtIrIWDLr-tgk~i--~t~-~~~~~~-s~ItsLafSPdG~~LaSGSsDG 1932 (2004)
..+......++|+ ++++.++++ ..++.|.+||.. +++.. ..+ ....+. .....++++++|+++++...++
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 2334457889999 999766555 457899999986 34321 111 112222 4578899999999888888889
Q ss_pred eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEE-EECCCeEEEEECCCC
Q psy8748 1933 NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVT-SSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1933 sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaS-gS~DGtIrIWdlstg 1984 (2004)
.|.+||..+++....+..+...+.+++|+++++.|+. ...++.|..|++...
T Consensus 248 ~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 9999999878777777777788999999999995554 455688999998753
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.29 E-value=8.2e-10 Score=129.43 Aligned_cols=237 Identities=12% Similarity=0.100 Sum_probs=174.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEeeCCC-CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEec
Q psy8748 1702 GDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS-AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLG 1780 (2004)
Q Consensus 1702 PDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht-~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~g 1780 (2004)
..+++|++++.|+.|++||.++|+.+..+..+. ..+.++.++|+|++++ +.++.|..||. ++ +.+..+..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G------~~~W~~~~ 73 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG------RELWNIAA 73 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS------CEEEEEEC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC------CEEEEEcC
Confidence 346789999999999999999999999998876 5789999999999888 34677999987 43 23333433
Q ss_pred C-ccceeeeEEeCCC-cEEEeec-CCeEEEEECCCCceeEEeec-----cccCCeEEEEECCCCCEEEEEECCCeEEEEE
Q psy8748 1781 Y-EGFLSSCRFIDDT-TLLTGSG-DMKIVTWNLETGQRIHEVAQ-----AHIGDVVSISLSPDGQYFVTGSVDKSCKLWD 1852 (2004)
Q Consensus 1781 h-~~~Vssvafsdd~-~LlSgS~-DGtI~IWDl~tg~~i~~il~-----~h~~~ItsLafSPdg~~LaSGS~DGsIrIWD 1852 (2004)
. ...+.++.+.+++ .+++.+. ++.|..+|. +|+.+.++.. .+......+++.++|+++++...++.|..||
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d 152 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA 152 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEEC
Confidence 3 2356666666554 4555565 788888886 6666555421 1222345567899999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCC----CCCCeEEEEEcCCCCEEEEE
Q psy8748 1853 FREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN----KNSGFTSCAVSSSGRYIFCG 1928 (2004)
Q Consensus 1853 lrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~----~~s~ItsLafSPdG~~LaSG 1928 (2004)
.. ++.+..+... ..+.++...++|+.+++++.+++|..+|..+++.+.++.... ....+..++..++|+++++.
T Consensus 153 ~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 153 PN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp TT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 88 9988888654 456678889999999999888899999999999998885321 12336788889999988876
Q ss_pred eCC--------CeEEEEEC-CCCeeeEEEcc
Q psy8748 1929 SDD--------NNVHVWDL-LKTTHNGVLSG 1950 (2004)
Q Consensus 1929 SsD--------GsIrIWDL-~tge~l~tL~g 1950 (2004)
... +..+++++ .+++.+..+..
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 231 WQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp ECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred ccCccccccccCCceEEEECCCCCEEEEecC
Confidence 421 23355555 46666666643
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.28 E-value=1.1e-08 Score=125.05 Aligned_cols=239 Identities=8% Similarity=-0.053 Sum_probs=165.0
Q ss_pred EEEEeCCCCEEEEEe----------CCCeEEEEECCCCceEEEeeCC-------CCceEEEEEecCCCEEEEeec--CCe
Q psy8748 1697 SVHYSGDSRHCVSGS----------LDGKLIIWDTWTGNKTQVIPLR-------SAWVMSVAFAQSGNFVACGGM--DNM 1757 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS----------~DGtIrVWDl~Tgk~l~ti~~H-------t~~ItsLafSPdg~~LaSGS~--DGt 1757 (2004)
.++++|||++++.+. .++.|.+||..+++.+..+... ......+.|+|||++++++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 789999999988875 3678999999999888877543 123468999999999998874 478
Q ss_pred EEEEEcCCCCCCCcceEEEE-EecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeec----cccCC-eEEEE
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRE-LLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ----AHIGD-VVSIS 1831 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~s-l~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~----~h~~~-ItsLa 1831 (2004)
|.++| .+++ .... +. ....+ .+.......+++.+.||.+.++|. +++....... ....+ .....
T Consensus 150 v~viD-~t~~------~~~~~i~-~~~~~-~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~ 219 (373)
T 2mad_H 150 VGLVV-QGGS------SDDQLLS-SPTCY-HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPA 219 (373)
T ss_pred EEEEE-CCCC------EEeEEcC-CCceE-EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecce
Confidence 99999 7653 2233 22 11211 111112345677888999999999 7776532210 11111 12345
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCe--EEEEEec----------CCCCeEEEEEeCCCCEEEEEEC----------CCe
Q psy8748 1832 LSPDGQYFVTGSVDKSCKLWDFREKK--CVQTFFG----------HEADVNSVCFHPSGLAFATGSE----------DKT 1889 (2004)
Q Consensus 1832 fSPdg~~LaSGS~DGsIrIWDlrs~k--~I~tl~~----------h~s~ItsIafSPdg~~LaSgS~----------DGt 1889 (2004)
+.+++..++..+.+|.+.+.|+.... .+..+.- .......+.++|+++.++++.. ++.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 56666655555578899999987542 2222211 1122444789999998888653 357
Q ss_pred EEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC-EEEEEe-CCCeEEEEECCCCeeeEEE
Q psy8748 1890 ARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR-YIFCGS-DDNNVHVWDLLKTTHNGVL 1948 (2004)
Q Consensus 1890 IrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~-~LaSGS-sDGsIrIWDL~tge~l~tL 1948 (2004)
|.++|..+++.+.++... .....++|+|||+ .++++. .++.|.+||+.+++.+..+
T Consensus 300 V~VID~~t~~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 300 VTSVTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEECCCCEEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 999999999998888433 3478999999999 777777 4899999999999998874
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.28 E-value=3.8e-10 Score=149.25 Aligned_cols=274 Identities=13% Similarity=0.059 Sum_probs=178.2
Q ss_pred CCCCEEEEEeCCCe---EEEE--ECC---CCceEEEe------eCCCCceEEEEEecCCCEEEEeecC-----CeEEEEE
Q psy8748 1702 GDSRHCVSGSLDGK---LIIW--DTW---TGNKTQVI------PLRSAWVMSVAFAQSGNFVACGGMD-----NMCTVYD 1762 (2004)
Q Consensus 1702 PDG~~LASGS~DGt---IrVW--Dl~---Tgk~l~ti------~~Ht~~ItsLafSPdg~~LaSGS~D-----GtIrVWD 1762 (2004)
|+|++++....++. -.+| +.. .++....+ .+|...+.++.|+|||++|+.+..+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 88888776554432 4444 443 34333222 2233468899999999999887654 4699999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCC--------------eEEEEECCCCceeE-Eeec--cccC
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM--------------KIVTWNLETGQRIH-EVAQ--AHIG 1825 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DG--------------tI~IWDl~tg~~i~-~il~--~h~~ 1825 (2004)
+.+++. ... ......+..+.|+++..++.++.++ .|++|++.++.... .+.. .+..
T Consensus 196 l~tg~~------~~~-~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~ 268 (741)
T 1yr2_A 196 VADGKP------LAD-ELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPK 268 (741)
T ss_dssp TTTCCE------EEE-EEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred CCCCCC------CCc-cCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCe
Confidence 987642 111 1111223577888765577666554 39999998776321 1222 2233
Q ss_pred CeEEEEECCCCCEEEEEECCC-----eEEEEECCCC--eEEEEEecCCCCeEEEEEeCCCCEEEEEECC----CeEEEEE
Q psy8748 1826 DVVSISLSPDGQYFVTGSVDK-----SCKLWDFREK--KCVQTFFGHEADVNSVCFHPSGLAFATGSED----KTARLFD 1894 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSGS~DG-----sIrIWDlrs~--k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D----GtIrIWD 1894 (2004)
.+..+.|+|||++++..+.++ .|++||+.++ +....+..+...+.... +|+|+.|+..+.+ +.|.+||
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d 347 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVD 347 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEe
Confidence 588999999999988887554 8999999876 31345555555555553 4888888887763 4599999
Q ss_pred ccCCc-eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEEcc-CCCCeEEEEEcCCCCEEEEE-
Q psy8748 1895 IRADQ-QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL-KTTHNGVLSG-HENRVTSISLSPNGMALVTS- 1970 (2004)
Q Consensus 1895 Lrtgk-~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~-tge~l~tL~g-Hs~~VtsLaFSPDg~~LaSg- 1970 (2004)
+.++. ....+. +.+...+..++++ ++.++++...||..++|.+. ++.....+.. +.+.|..++++++++.++..
T Consensus 348 ~~~~~~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ 425 (741)
T 1yr2_A 348 LSGSTPRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSF 425 (741)
T ss_dssp CSSSSCEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEE
T ss_pred CCCCccccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEE
Confidence 98752 333333 2333446677777 56777888889887777543 4556666654 36778999999998766533
Q ss_pred ---ECCCeEEEEECCCCe
Q psy8748 1971 ---SWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1971 ---S~DGtIrIWdlstg~ 1985 (2004)
...++|+.||+.+++
T Consensus 426 ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 426 SSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETTEEEEEEEEETTTTE
T ss_pred cCCCCCCEEEEEECCCCc
Confidence 234789999999875
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.25 E-value=3.2e-09 Score=123.22 Aligned_cols=242 Identities=13% Similarity=0.116 Sum_probs=165.8
Q ss_pred cccccceeEEEEeCCCCEEEE-------EeCCCeEEEEECCCCceEEEee----CCCCceEEEEEecC-CCEEEEeecCC
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVS-------GSLDGKLIIWDTWTGNKTQVIP----LRSAWVMSVAFAQS-GNFVACGGMDN 1756 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LAS-------GS~DGtIrVWDl~Tgk~l~ti~----~Ht~~ItsLafSPd-g~~LaSGS~DG 1756 (2004)
.+.-....+++|+++|..+++ +..++.|.+||..+++...... ++...+.+++++++ ++.+++.. .+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence 444556789999999988877 5678999999988887643322 14466899999999 66555544 44
Q ss_pred eEEEEEcCCCCCCCcceEE-EEE-e-cCccceeeeEEeCCCcEEEeec-C---------------CeEEEEECCCCceeE
Q psy8748 1757 MCTVYDLNNRDSTGAAKVI-REL-L-GYEGFLSSCRFIDDTTLLTGSG-D---------------MKIVTWNLETGQRIH 1817 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i-~sl-~-gh~~~Vssvafsdd~~LlSgS~-D---------------GtI~IWDl~tg~~i~ 1817 (2004)
.|.+|+.+ +. .... ... . .....+..+.+.+++.+++++. + +.|..||.. ++..
T Consensus 93 ~l~~~d~~-g~----~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~- 165 (314)
T 1pjx_A 93 GLLVVQTD-GT----FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI- 165 (314)
T ss_dssp EEEEEETT-SC----EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-
T ss_pred CEEEEeCC-CC----EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-
Confidence 68889886 32 1111 000 0 1123467788877666665554 3 578888876 5433
Q ss_pred EeeccccCCeEEEEEC----CCCCEEEEEE-CCCeEEEEECC-CCe-----EEEEEecCC-CCeEEEEEeCCCCEEEEEE
Q psy8748 1818 EVAQAHIGDVVSISLS----PDGQYFVTGS-VDKSCKLWDFR-EKK-----CVQTFFGHE-ADVNSVCFHPSGLAFATGS 1885 (2004)
Q Consensus 1818 ~il~~h~~~ItsLafS----Pdg~~LaSGS-~DGsIrIWDlr-s~k-----~I~tl~~h~-s~ItsIafSPdg~~LaSgS 1885 (2004)
.. ..+......++++ ++++.++++. .++.|.+||.. +++ ....+..+. ..+..++++++|+++++..
T Consensus 166 ~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 166 QV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred Ee-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 22 2334456889999 9997766654 57899999976 443 222333333 5688999999999888877
Q ss_pred CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q psy8748 1886 EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLK 1941 (2004)
Q Consensus 1886 ~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~t 1941 (2004)
.++.|.+||..+++....+..+ ...+.+++++++|+.|++++ .++.|..|++..
T Consensus 245 ~~~~i~~~d~~~g~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTTEEEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcCCCCcEeEEEeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8899999999877766655432 25689999999999665554 568899999764
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.23 E-value=3.4e-09 Score=130.19 Aligned_cols=281 Identities=13% Similarity=0.034 Sum_probs=193.1
Q ss_pred EeCCCCEEEEEeC-----CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee----------cCCeEEEEEcC
Q psy8748 1700 YSGDSRHCVSGSL-----DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG----------MDNMCTVYDLN 1764 (2004)
Q Consensus 1700 FSPDG~~LASGS~-----DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS----------~DGtIrVWDl~ 1764 (2004)
..|+++.+++... ++.|.+.|..+++.+..+.....+ . +.++|||++++++. .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 3488888777765 679999999999999999876665 4 99999999887775 36789999998
Q ss_pred CCCCCCcceEEEEEecC-------ccceeeeEEeCCC-cEEEeec--CCeEEEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1765 NRDSTGAAKVIRELLGY-------EGFLSSCRFIDDT-TLLTGSG--DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh-------~~~Vssvafsdd~-~LlSgS~--DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
+.+ ....+.-. ......+.+++++ +++++.. ++.|.++|..+++.+..+.... . ...+..
T Consensus 118 t~~------v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g---~-~~~~P~ 187 (386)
T 3sjl_D 118 TLL------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD---C-YHIFPT 187 (386)
T ss_dssp TCC------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E-EEEEEE
T ss_pred CCe------EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC---c-ceeecC
Confidence 653 33333211 1245567777554 5666653 6899999999999887663221 1 222333
Q ss_pred CCCEEEEEECCCeEEEEECCC-CeEEEEEecC----CCCeE-EEEEe-CCCCEEEEEECCCeEEEEEccCCce--eEEEc
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFRE-KKCVQTFFGH----EADVN-SVCFH-PSGLAFATGSEDKTARLFDIRADQQ--IATYL 1905 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs-~k~I~tl~~h----~s~It-sIafS-Pdg~~LaSgS~DGtIrIWDLrtgk~--i~t~~ 1905 (2004)
..+.+++.+.||.+.+.++.. ++.......+ ..++. ...|. ++|++++ .+.+|+|++.|+.++.. ...+.
T Consensus 188 g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~ 266 (386)
T 3sjl_D 188 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVE 266 (386)
T ss_dssp ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEE
T ss_pred CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeeccee
Confidence 456777888899999999876 5543222111 12221 24565 5775555 55689999999976542 22221
Q ss_pred --------CCCCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC-E
Q psy8748 1906 --------PPNKNSGFTSCAVSSSGRYIFCGSD----------DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM-A 1966 (2004)
Q Consensus 1906 --------~~~~~s~ItsLafSPdG~~LaSGSs----------DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~-~ 1966 (2004)
..-.......++++++++.+++... .+.|.++|+.+++.+..+.. ..++.++++++|++ +
T Consensus 267 ~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ 345 (386)
T 3sjl_D 267 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPL 345 (386)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCE
T ss_pred ccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeE
Confidence 0001123345778999998888753 25799999999999988863 23788999999996 6
Q ss_pred EEEEE-CCCeEEEEECCCCeEEEEEEeec
Q psy8748 1967 LVTSS-WDQFVKVWQESNTIVWKVLKVYN 1994 (2004)
Q Consensus 1967 LaSgS-~DGtIrIWdlstg~l~k~Ik~~~ 1994 (2004)
|+++. .++.|.++|..+++..+.++...
T Consensus 346 ly~tn~~~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 346 LYALSTGDKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEecCCC
Confidence 66654 58999999999998877776553
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.21 E-value=2.3e-08 Score=114.63 Aligned_cols=239 Identities=9% Similarity=-0.012 Sum_probs=171.3
Q ss_pred CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec-CCeEEEEECC
Q psy8748 1733 RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG-DMKIVTWNLE 1811 (2004)
Q Consensus 1733 Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~-DGtI~IWDl~ 1811 (2004)
....+.++++.++|+.+++...++.|.+|+.. +. ... .........+..+.+.+++.++++.. ++.|..||..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~----~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR----IKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC----EEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc----eEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 45678999999999988887778999999876 32 111 11222335677787776666665554 7889999988
Q ss_pred CCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeE
Q psy8748 1812 TGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQT-FFGHEADVNSVCFHPSGLAFATGSEDKTA 1890 (2004)
Q Consensus 1812 tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~t-l~~h~s~ItsIafSPdg~~LaSgS~DGtI 1890 (2004)
++............+.+++++++|+++++...++.|..||.. ++.... +......+.++++.++|+.+++...++.|
T Consensus 92 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 92 -GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI 169 (300)
T ss_dssp -SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred -CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence 554322222234678999999999877776668899999987 554322 22345678999999999966666667899
Q ss_pred EEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-EccCCCCeEEEEEcCCCCEEEE
Q psy8748 1891 RLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGV-LSGHENRVTSISLSPNGMALVT 1969 (2004)
Q Consensus 1891 rIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~t-L~gHs~~VtsLaFSPDg~~LaS 1969 (2004)
..||. +++... +........+..++++++|++.++....+.|.+||. +++.... ...+...+.+++++++|++.++
T Consensus 170 ~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 170 GRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe
Confidence 99998 555443 333333456889999999987777767788999998 5544332 3345667899999999997777
Q ss_pred EECCCeEEEEECC
Q psy8748 1970 SSWDQFVKVWQES 1982 (2004)
Q Consensus 1970 gS~DGtIrIWdls 1982 (2004)
...++.|..|+..
T Consensus 247 ~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 247 EWGANQIGRITND 259 (300)
T ss_dssp ETTTTEEEEECTT
T ss_pred ccCCCeEEEECCC
Confidence 6667899999984
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.21 E-value=3.9e-09 Score=129.69 Aligned_cols=253 Identities=12% Similarity=0.083 Sum_probs=172.7
Q ss_pred EEEEeCCCCEEEEEe----------CCCeEEEEECCCCceEEEeeCCC-------CceEEEEEecCCCEEEEeec--CCe
Q psy8748 1697 SVHYSGDSRHCVSGS----------LDGKLIIWDTWTGNKTQVIPLRS-------AWVMSVAFAQSGNFVACGGM--DNM 1757 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS----------~DGtIrVWDl~Tgk~l~ti~~Ht-------~~ItsLafSPdg~~LaSGS~--DGt 1757 (2004)
.++++|||++++++. .++.|.+||..+++.+..+.... .....+.|+|||++++++.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 389999999887765 36789999999999998875432 24567899999999888864 689
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCC-CceeEEe---eccccCCeE-EEE
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLET-GQRIHEV---AQAHIGDVV-SIS 1831 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~t-g~~i~~i---l~~h~~~It-sLa 1831 (2004)
|.++|+.++ +....+.-.. . . ..+. ....+++.+.||.+.+.+..+ ++..... +......+. ...
T Consensus 162 VsVID~~t~------~vv~tI~v~g-~-~-~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~ 232 (386)
T 3sjl_D 162 VGVVDLEGK------AFKRMLDVPD-C-Y-HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA 232 (386)
T ss_dssp EEEEETTTT------EEEEEEECCS-E-E-EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCE
T ss_pred EEEEECCCC------cEEEEEECCC-c-c-eeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccce
Confidence 999999865 3444443211 1 1 2223 345677888999999999986 5543211 111111221 235
Q ss_pred EC-CCCCEEEEEECCCeEEEEECCCCe--EEEEEe--c--------CCCCeEEEEEeCCCCEEEEEEC----------CC
Q psy8748 1832 LS-PDGQYFVTGSVDKSCKLWDFREKK--CVQTFF--G--------HEADVNSVCFHPSGLAFATGSE----------DK 1888 (2004)
Q Consensus 1832 fS-Pdg~~LaSGS~DGsIrIWDlrs~k--~I~tl~--~--------h~s~ItsIafSPdg~~LaSgS~----------DG 1888 (2004)
|. ++|++++ .+.+|.|++.|..... .+..+. . .......++++++++.+++... .+
T Consensus 233 ~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~ 311 (386)
T 3sjl_D 233 YSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR 311 (386)
T ss_dssp EETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred eEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCC
Confidence 54 5665544 5668999999997654 222221 0 1123445778999998888653 25
Q ss_pred eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC-EEEEEe-CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCC
Q psy8748 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR-YIFCGS-DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPN 1963 (2004)
Q Consensus 1889 tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~-~LaSGS-sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPD 1963 (2004)
.|.++|+.+++.+..+... ..+..+++++|++ +|++.. .++.|.++|..+++.+.++..- +.-..+.+++|
T Consensus 312 ~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 312 FVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EEEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 7999999999999888543 3577899999997 677655 4899999999999999988642 33344555554
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.17 E-value=1.3e-09 Score=144.16 Aligned_cols=245 Identities=11% Similarity=0.046 Sum_probs=162.0
Q ss_pred cccceeEEEEeCCCCEEEEEeCC-----CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCe--------
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLD-----GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNM-------- 1757 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~D-----GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGt-------- 1757 (2004)
|...+..++|||||++||.+..+ ..|++||+.+|+.+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44578899999999999877654 4699999999987653 112222357899999 98888876553
Q ss_pred ------EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecC-----CeEEEEECCCC--ceeEEeeccc
Q psy8748 1758 ------CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGD-----MKIVTWNLETG--QRIHEVAQAH 1823 (2004)
Q Consensus 1758 ------IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~D-----GtI~IWDl~tg--~~i~~il~~h 1823 (2004)
|++|++.++.. ....+.....+...+..+.|++++ .++..+.+ ..|++||+.++ .....+. .+
T Consensus 239 ~~~~~~v~~~~lgt~~~--~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~ 315 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQS--ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI-PD 315 (741)
T ss_dssp CCCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE-CS
T ss_pred CCCCCEEEEEECCCCch--hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec-CC
Confidence 88888865421 112222222233357788888766 45555543 48999999877 3122333 33
Q ss_pred cCCeEEEEECCCCCEEEEEECC----CeEEEEECCCC--eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEcc-
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVD----KSCKLWDFREK--KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR- 1896 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~D----GsIrIWDlrs~--k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLr- 1896 (2004)
...+.... +|+|+.|+..+.+ +.|.+||+.++ .....+..+...+..+.|+ ++.++++...||..++|.+.
T Consensus 316 ~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~ 393 (741)
T 1yr2_A 316 LKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL 393 (741)
T ss_dssp SSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET
T ss_pred CCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence 44444443 4889988888764 45999999874 3344444455556778887 56678888889987777654
Q ss_pred CCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe----CCCeEEEEECCCCe
Q psy8748 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS----DDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1897 tgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS----sDGsIrIWDL~tge 1943 (2004)
+++....+..+ ....+..+.++|+++.++... ..++|++||+.+++
T Consensus 394 ~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 394 DGKPAGAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp TSCEEEECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCceeeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 45555554322 245678899999988665332 24789999998876
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.14 E-value=8e-09 Score=128.67 Aligned_cols=275 Identities=15% Similarity=0.071 Sum_probs=189.3
Q ss_pred CCCCEEEEEeC-C----CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee----------cCCeEEEEEcCCC
Q psy8748 1702 GDSRHCVSGSL-D----GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG----------MDNMCTVYDLNNR 1766 (2004)
Q Consensus 1702 PDG~~LASGS~-D----GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS----------~DGtIrVWDl~t~ 1766 (2004)
++++.+++... + +.|.++|..+++.+..+.....+ .+.++||+++++++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 45665555443 2 69999999999999999876666 899999999888776 4678999999765
Q ss_pred CCCCcceEEEEEecC-------ccceeeeEEeCCC-cEEEeec--CCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1767 DSTGAAKVIRELLGY-------EGFLSSCRFIDDT-TLLTGSG--DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh-------~~~Vssvafsdd~-~LlSgS~--DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
+ ....+.-. ......+.+++++ +++++.. ++.|.++|..+++.+..+..+.. ....|++
T Consensus 160 ~------vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-----~~~~p~g 228 (426)
T 3c75_H 160 L------PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-----YHIFPAS 228 (426)
T ss_dssp C------EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEE
T ss_pred c------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-----eeeccCC
Confidence 3 33333211 1234567777554 5666653 58899999999998766643221 2233433
Q ss_pred -CEEEEEECCCeEEEEECCCCeEEEE----EecCCCCe-EEEEEeCCCCEEEEEECCCeEEEEEccCCceeE--EEcCC-
Q psy8748 1837 -QYFVTGSVDKSCKLWDFREKKCVQT----FFGHEADV-NSVCFHPSGLAFATGSEDKTARLFDIRADQQIA--TYLPP- 1907 (2004)
Q Consensus 1837 -~~LaSGS~DGsIrIWDlrs~k~I~t----l~~h~s~I-tsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~--t~~~~- 1907 (2004)
+.+++.+.||.+.+.+..+++.... +.....++ ..+.+.+++..++..+..|.|.+.|........ .+...
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~ 308 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALT 308 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSC
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecc
Confidence 5666777888888888865554422 11111221 245678998888888889999999987544221 11100
Q ss_pred -C------CCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC-EEEE
Q psy8748 1908 -N------KNSGFTSCAVSSSGRYIFCGSD----------DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM-ALVT 1969 (2004)
Q Consensus 1908 -~------~~s~ItsLafSPdG~~LaSGSs----------DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~-~LaS 1969 (2004)
. .......++++++++.+++... ++.|.++|+.+.+.+..+... ....+++|+|||+ ++++
T Consensus 309 ~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv 387 (426)
T 3c75_H 309 EAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYA 387 (426)
T ss_dssp TTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEE
T ss_pred ccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEE
Confidence 0 0011223689999998877653 357999999999999888632 3588999999999 8888
Q ss_pred EE-CCCeEEEEECCCCeEEEEE
Q psy8748 1970 SS-WDQFVKVWQESNTIVWKVL 1990 (2004)
Q Consensus 1970 gS-~DGtIrIWdlstg~l~k~I 1990 (2004)
+. .++.|.++|..+++..+.+
T Consensus 388 ~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 388 LSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EETTTTEEEEEETTTCCEEEEE
T ss_pred EcCCCCeEEEEECCCCCEEEEe
Confidence 88 5999999999998776665
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.11 E-value=4.8e-08 Score=114.52 Aligned_cols=231 Identities=10% Similarity=0.068 Sum_probs=157.6
Q ss_pred eCCCCceEEEEEecCC-CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEE
Q psy8748 1731 PLRSAWVMSVAFAQSG-NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWN 1809 (2004)
Q Consensus 1731 ~~Ht~~ItsLafSPdg-~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWD 1809 (2004)
..+.....+..|++++ ..+++...++.|..|+..++. . .. ......+.++.+.+++.++++. ++.|.+||
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~----~---~~-~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d 79 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ----V---QR-VTMDAPVSSVALRQSGGYVATI-GTKFCALN 79 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC----E---EE-EECSSCEEEEEEBTTSSEEEEE-TTEEEEEE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc----E---EE-EeCCCceEEEEECCCCCEEEEE-CCeEEEEE
Confidence 3344556788999954 566666678899999987642 1 11 1234568888888777777776 67899999
Q ss_pred CCCCceeEEeecc---ccCCeEEEEECCCCCEEEEEEC-----------CCeEEEEECCCCeEEEEEecCCCCeEEEEEe
Q psy8748 1810 LETGQRIHEVAQA---HIGDVVSISLSPDGQYFVTGSV-----------DKSCKLWDFREKKCVQTFFGHEADVNSVCFH 1875 (2004)
Q Consensus 1810 l~tg~~i~~il~~---h~~~ItsLafSPdg~~LaSGS~-----------DGsIrIWDlrs~k~I~tl~~h~s~ItsIafS 1875 (2004)
..+++........ ....+..++++|+|+++++... .+.|+.+|.. ++. ..+.......+.++|+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~~s 157 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLDWS 157 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEEEC
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceEEc
Confidence 9887654222111 1234788999999996654432 1344444443 333 2233334557899999
Q ss_pred CCCCEEEE-EECCCeEEEEEc--cCCcee--EEE-cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEc
Q psy8748 1876 PSGLAFAT-GSEDKTARLFDI--RADQQI--ATY-LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS 1949 (2004)
Q Consensus 1876 Pdg~~LaS-gS~DGtIrIWDL--rtgk~i--~t~-~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~ 1949 (2004)
|+++.++. .+.++.|.+||+ .++... ..+ ...........++++++|++.++...++.|..||..+++.+..+.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 99987654 455789999997 445432 111 112222456789999999988888888899999999899999988
Q ss_pred cCCCCeEEEEEc-CCCCEEEEEEC
Q psy8748 1950 GHENRVTSISLS-PNGMALVTSSW 1972 (2004)
Q Consensus 1950 gHs~~VtsLaFS-PDg~~LaSgS~ 1972 (2004)
.+...+++++|. |+++.|+.++.
T Consensus 238 ~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 238 LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCceEEEEeCCCCCEEEEEcC
Confidence 887889999998 88877665543
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.11 E-value=2.4e-08 Score=123.48 Aligned_cols=240 Identities=12% Similarity=0.062 Sum_probs=166.4
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCC--eEEEEEcCCCCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDN--MCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG--tIrVWDl~t~~~~~ 1770 (2004)
.....++|+++++++++...++.|++||..++........... .. ++|+++++.++++..++ .|.+|+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~--- 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW--- 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT---
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCc---
Confidence 4688999999999878877789999999988777665554333 34 99999999998888766 78888875432
Q ss_pred cceEEEEEec-CccceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEe---eccccCCe--EEEEECCC-CCEEEEE
Q psy8748 1771 AAKVIRELLG-YEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEV---AQAHIGDV--VSISLSPD-GQYFVTG 1842 (2004)
Q Consensus 1771 ~~k~i~sl~g-h~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~i---l~~h~~~I--tsLafSPd-g~~LaSG 1842 (2004)
.......... ......++++.+ ++.++++..++.|+.||..++...... ..+....- ..++|+|+ +.++++-
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 1111111112 445667888887 677777888899999999877643210 11222222 28999996 4444555
Q ss_pred ECCCeEEEEECCCCeEEEEEecCC---------------CCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcC
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHE---------------ADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~---------------s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
..++.|+.|+.... +..+.++. .....++++++|+++++-+ .++.|+.||..++........
T Consensus 286 ~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~ 363 (409)
T 3hrp_A 286 QNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQ 363 (409)
T ss_dssp TTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCC
Confidence 56788999997644 33333332 3478999999999777777 789999999877764333321
Q ss_pred CC------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1907 PN------------KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1907 ~~------------~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
.. .......++++++|.++++-..++.|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 00 1235789999999888888778888988875
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.10 E-value=1.7e-08 Score=125.68 Aligned_cols=241 Identities=11% Similarity=0.037 Sum_probs=169.5
Q ss_pred EEEEeCCCCEEEEEe----------CCCeEEEEECCCCceEEEeeCC-------CCceEEEEEecCCCEEEEeec--CCe
Q psy8748 1697 SVHYSGDSRHCVSGS----------LDGKLIIWDTWTGNKTQVIPLR-------SAWVMSVAFAQSGNFVACGGM--DNM 1757 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS----------~DGtIrVWDl~Tgk~l~ti~~H-------t~~ItsLafSPdg~~LaSGS~--DGt 1757 (2004)
.++++|||++++++. .++.|.++|..+++.+..+... ......+.|+|||++++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 789999999887765 3678999999999998887632 223567899999999998874 578
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEe---eccccCC-eEEEEEC
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV---AQAHIGD-VVSISLS 1833 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~i---l~~h~~~-ItsLafS 1833 (2004)
|.+.|..+. +....+.-.. . ..+.......+++.+.||.+.+.+..+++..... +.....+ ...+.+.
T Consensus 202 VsVID~~t~------kvv~~I~v~g-~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 202 VGVVDLEGK------TFDRMLDVPD-C-YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFS 273 (426)
T ss_dssp EEEEETTTT------EEEEEEECCS-E-EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEEC
T ss_pred EEEEECCCC------eEEEEEEcCC-c-eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeec
Confidence 999999865 3333333211 1 1122223355777888999998898666544211 1111111 1235678
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEE--EEEec----------CCCCeEEEEEeCCCCEEEEEEC----------CCeEE
Q psy8748 1834 PDGQYFVTGSVDKSCKLWDFREKKCV--QTFFG----------HEADVNSVCFHPSGLAFATGSE----------DKTAR 1891 (2004)
Q Consensus 1834 Pdg~~LaSGS~DGsIrIWDlrs~k~I--~tl~~----------h~s~ItsIafSPdg~~LaSgS~----------DGtIr 1891 (2004)
+++..++..+..|.+.+.|....... ..+.- .......++++|+++.+++... ++.|.
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 89888888888899999998755421 11110 0111223789999888777642 35799
Q ss_pred EEEccCCceeEEEcCCCCCCCeEEEEEcCCCC-EEEEEe-CCCeEEEEECCCCeeeEEE
Q psy8748 1892 LFDIRADQQIATYLPPNKNSGFTSCAVSSSGR-YIFCGS-DDNNVHVWDLLKTTHNGVL 1948 (2004)
Q Consensus 1892 IWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~-~LaSGS-sDGsIrIWDL~tge~l~tL 1948 (2004)
++|..+.+.+.++... .....+.|+|||+ ++++.. .++.|.++|+.+++.++.+
T Consensus 354 VID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 354 VLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 9999999999888432 2467899999999 888888 5899999999999999887
No 211
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.10 E-value=1.2e-08 Score=134.26 Aligned_cols=280 Identities=12% Similarity=0.058 Sum_probs=195.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCc-----------eEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAW-----------VMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~-----------ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
+..+++++.++.|..+|..+|+.+..+...... ...+++ ++..+++++.|+.+..+|..+++.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~---- 150 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKE---- 150 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE----
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCE----
Confidence 456777777899999999999999888654221 122333 367888889999999999987642
Q ss_pred eEEEEEecC-c----cceeeeEEeCCCcEEEeec------CCeEEEEECCCCceeEEeeccccC----------------
Q psy8748 1773 KVIRELLGY-E----GFLSSCRFIDDTTLLTGSG------DMKIVTWNLETGQRIHEVAQAHIG---------------- 1825 (2004)
Q Consensus 1773 k~i~sl~gh-~----~~Vssvafsdd~~LlSgS~------DGtI~IWDl~tg~~i~~il~~h~~---------------- 1825 (2004)
.-..... . ..+.......++.+++++. +|.|+.||..+|+.+.+.......
T Consensus 151 --~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~ 228 (677)
T 1kb0_A 151 --VWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (677)
T ss_dssp --EEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred --EeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence 2222221 1 1222222223556666654 699999999999988665322111
Q ss_pred ---------------CeEEEEECCCCCEEEEEECCC-------------------eEEEEECCCCeEEEEEecCC-----
Q psy8748 1826 ---------------DVVSISLSPDGQYFVTGSVDK-------------------SCKLWDFREKKCVQTFFGHE----- 1866 (2004)
Q Consensus 1826 ---------------~ItsLafSPdg~~LaSGS~DG-------------------sIrIWDlrs~k~I~tl~~h~----- 1866 (2004)
....++++++++.+++++.++ .|..+|.++++.+..+....
T Consensus 229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd 308 (677)
T 1kb0_A 229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD 308 (677)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred ccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc
Confidence 113578889999999887664 59999999999888775421
Q ss_pred ----CCeEEEEEeCCC---CEEEEEECCCeEEEEEccCCceeEEEcCCCCC---------CCe-----------------
Q psy8748 1867 ----ADVNSVCFHPSG---LAFATGSEDKTARLFDIRADQQIATYLPPNKN---------SGF----------------- 1913 (2004)
Q Consensus 1867 ----s~ItsIafSPdg---~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~---------s~I----------------- 1913 (2004)
....-+....+| ..++.++.+|.++++|..+|+.+..+...... ..+
T Consensus 309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 122233344477 67899999999999999999988776432110 000
Q ss_pred -------EEEEEcCCCCEEEEEeCC-------------------------------------------CeEEEEECCCCe
Q psy8748 1914 -------TSCAVSSSGRYIFCGSDD-------------------------------------------NNVHVWDLLKTT 1943 (2004)
Q Consensus 1914 -------tsLafSPdG~~LaSGSsD-------------------------------------------GsIrIWDL~tge 1943 (2004)
..++++|++.++++...+ |.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 146889998888876432 789999999999
Q ss_pred eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1944 HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1944 ~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
.+..+. +..++.+..+..++..++.++.||.+++||..+++.+..++.
T Consensus 469 ~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 469 AAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 988876 334455556677888899999999999999999977655554
No 212
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.09 E-value=2.8e-08 Score=131.03 Aligned_cols=284 Identities=11% Similarity=0.032 Sum_probs=189.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCc----------e-EEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAW----------V-MSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~----------I-tsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
+..+++++.++.|+.+|..+|+.+..+..+... + ..+.. .+..+++++.||.|..+|..+++.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 556777888899999999999999988654321 0 11222 3678888999999999999876532211
Q ss_pred eEEEEEecCccceeeeEEeCCCcEEEee------cCCeEEEEECCCCceeEEeeccc-----------------------
Q psy8748 1773 KVIRELLGYEGFLSSCRFIDDTTLLTGS------GDMKIVTWNLETGQRIHEVAQAH----------------------- 1823 (2004)
Q Consensus 1773 k~i~sl~gh~~~Vssvafsdd~~LlSgS------~DGtI~IWDl~tg~~i~~il~~h----------------------- 1823 (2004)
.... -......+.+.....++.+++++ .+|.|+.||..+|+.+.+.....
T Consensus 148 ~~~~-~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRA-DHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCS-CTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcC-CCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 1100 00000111111111245566654 36899999999999876653210
Q ss_pred -------cCCeEEEEECCCCCEEEEEECCCe-------------------EEEEECCCCeEEEEEecC--C-------CC
Q psy8748 1824 -------IGDVVSISLSPDGQYFVTGSVDKS-------------------CKLWDFREKKCVQTFFGH--E-------AD 1868 (2004)
Q Consensus 1824 -------~~~ItsLafSPdg~~LaSGS~DGs-------------------IrIWDlrs~k~I~tl~~h--~-------s~ 1868 (2004)
......++++|+++.+++++.++. |..||.++++.+..+... . .+
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 011125788898899999988764 999999999998877642 1 12
Q ss_pred eEEEEEeCCCC---EEEEEECCCeEEEEEccCCceeEEEcCCCC--------------------------C---------
Q psy8748 1869 VNSVCFHPSGL---AFATGSEDKTARLFDIRADQQIATYLPPNK--------------------------N--------- 1910 (2004)
Q Consensus 1869 ItsIafSPdg~---~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~--------------------------~--------- 1910 (2004)
+.......+|+ .++.++.+|.++++|.++|+.+........ .
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 22222333565 788999999999999999998754422110 0
Q ss_pred --CCeEEEEEcCCCCEEEEEeC---------------------------------------------CCeEEEEECCCCe
Q psy8748 1911 --SGFTSCAVSSSGRYIFCGSD---------------------------------------------DNNVHVWDLLKTT 1943 (2004)
Q Consensus 1911 --s~ItsLafSPdG~~LaSGSs---------------------------------------------DGsIrIWDL~tge 1943 (2004)
.....++++|+..+++++.. +|.|+.||+.+++
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 00123688998888887632 3789999999999
Q ss_pred eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1944 HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1944 ~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
.+..+..+. ++..-.+...+.+++.|+.||.++.||.++|+.+-..+
T Consensus 467 ~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 467 AAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp EEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 998886543 33334566678899999999999999999997654444
No 213
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.07 E-value=1.3e-07 Score=113.81 Aligned_cols=260 Identities=11% Similarity=0.029 Sum_probs=172.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCc
Q psy8748 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYE 1782 (2004)
Q Consensus 1703 DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~ 1782 (2004)
++..++.++.+|.|..+|..+|+.+................ +..+++++.+|.|..+|..+++.. .......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~------W~~~~~~ 173 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVK------WTVNLDM 173 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEE------EEEECCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEE------EEEeCCC
Confidence 35678888889999999999999988776543322222222 557888888999999999776421 1111111
Q ss_pred cce-----eeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCC------eEEEEECC--CCCEEEEEECCCeEE
Q psy8748 1783 GFL-----SSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD------VVSISLSP--DGQYFVTGSVDKSCK 1849 (2004)
Q Consensus 1783 ~~V-----ssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~------ItsLafSP--dg~~LaSGS~DGsIr 1849 (2004)
... .... ..++.+++++.+|.+..+|..+++............ +..+...| .+..+++++.+|.+.
T Consensus 174 ~~~~~~~~~~~~-~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~ 252 (376)
T 3q7m_A 174 PSLSLRGESAPT-TAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLT 252 (376)
T ss_dssp -----CCCCCCE-EETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEE
T ss_pred CceeecCCCCcE-EECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEE
Confidence 110 1111 235678889999999999999998876553221100 00011111 356788888899999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1850 LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1850 IWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
.+|.++++.+..... .....+.. ++..+++++.+|.+..+|..+++.......... ..+..... .+..+++++
T Consensus 253 ~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~ 325 (376)
T 3q7m_A 253 ALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGD 325 (376)
T ss_dssp EEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEEC
T ss_pred EEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEe
Confidence 999999987766542 23444444 356788888999999999999998877742211 11222222 357888999
Q ss_pred CCCeEEEEECCCCeeeEEEccCCCCeEE-EEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1930 DDNNVHVWDLLKTTHNGVLSGHENRVTS-ISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1930 sDGsIrIWDL~tge~l~tL~gHs~~Vts-LaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
.+|.++++|..+++.+.........+.. ... .+..|+.++.||.|+.|+
T Consensus 326 ~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 326 SEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 9999999999999998877654343322 222 245788899999999987
No 214
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.07 E-value=1.4e-07 Score=113.60 Aligned_cols=270 Identities=13% Similarity=0.034 Sum_probs=179.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCC---------CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceE
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS---------AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht---------~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
+..+++++.++.|..+|..+|+.+....... ..+.+ ....++..+++++.+|.|..+|..+++.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~------ 125 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTV------ 125 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCE------
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCE------
Confidence 5678888889999999999999988776532 22322 2222467788888899999999987642
Q ss_pred EEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCC----eEEEEECCCCCEEEEEECCCeEEE
Q psy8748 1775 IRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD----VVSISLSPDGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1775 i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~----ItsLafSPdg~~LaSGS~DGsIrI 1850 (2004)
.-............ ...++.+++++.++.|..+|..+|+............ ....... +..+++++.+|.+..
T Consensus 126 ~W~~~~~~~~~~~p-~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 126 AWQTKVAGEALSRP-VVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp EEEEECSSCCCSCC-EEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred EEEEeCCCceEcCC-EEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 11222111111111 2235688889999999999999998876553221100 0111222 457888888999999
Q ss_pred EECCCCeEEEEEecCCCC----eEE---EEEeC--CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCC
Q psy8748 1851 WDFREKKCVQTFFGHEAD----VNS---VCFHP--SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1851 WDlrs~k~I~tl~~h~s~----Its---IafSP--dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPd 1921 (2004)
+|..+++.+......... +.. +...| .+..+++++.+|.+..+|..+++........ ....+.. +
T Consensus 203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~~~~~~--~ 276 (376)
T 3q7m_A 203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG----SVNDFIV--D 276 (376)
T ss_dssp EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC----CEEEEEE--E
T ss_pred EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC----CCCCceE--E
Confidence 999999887766432110 000 11111 2457888888999999999999988776432 2334433 4
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1922 GRYIFCGSDDNNVHVWDLLKTTHNGVLSG-HENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1922 G~~LaSGSsDGsIrIWDL~tge~l~tL~g-Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
+..+++++.+|.|..+|..+++....... ....+..... .+..|+.++.+|.|.+||..+++.....+
T Consensus 277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 277 GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 67888888999999999999998877652 2222333333 35678899999999999999987544443
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.04 E-value=4.3e-08 Score=115.24 Aligned_cols=236 Identities=14% Similarity=0.171 Sum_probs=159.9
Q ss_pred ccccccccceeEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1686 KSLKGHINKVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~-~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
..+..+.......+|+++|+ +++++..++.|..|+. +++ ...+..+...+.+++++++|+++++...++.|..|+.+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 34445566778999999999 5667777899999997 554 34555566778999999999977776666889999875
Q ss_pred CCCCCCcceEEEE-EecC-ccceeeeEEeCCCcEEE-----eec-------------CCeEEEEECCCCceeEEeecccc
Q psy8748 1765 NRDSTGAAKVIRE-LLGY-EGFLSSCRFIDDTTLLT-----GSG-------------DMKIVTWNLETGQRIHEVAQAHI 1824 (2004)
Q Consensus 1765 t~~~~~~~k~i~s-l~gh-~~~Vssvafsdd~~LlS-----gS~-------------DGtI~IWDl~tg~~i~~il~~h~ 1824 (2004)
+. ...... ..+. ...+..+.+.+++.++. |.. .+.|+.||..+++.... . ..
T Consensus 116 -g~----~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~-~--~~ 187 (305)
T 3dr2_A 116 -GQ----AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM-A--DL 187 (305)
T ss_dssp -SC----EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE-E--EE
T ss_pred -CC----EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE-e--cC
Confidence 21 122111 1111 12355677777766666 332 36788888877765422 2 34
Q ss_pred CCeEEEEECCCCCEEEEEECC------CeEEEEECCCCeEE--EEE-ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEc
Q psy8748 1825 GDVVSISLSPDGQYFVTGSVD------KSCKLWDFREKKCV--QTF-FGHEADVNSVCFHPSGLAFATGSEDKTARLFDI 1895 (2004)
Q Consensus 1825 ~~ItsLafSPdg~~LaSGS~D------GsIrIWDlrs~k~I--~tl-~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDL 1895 (2004)
.....++|+|+++.++++... +.|++||+..+... ..+ ........++++.++|++ .+++.+ .|.+||.
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS 265 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC
Confidence 557889999999988887765 68999998765411 111 112344567899999984 444444 5999998
Q ss_pred cCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1896 RADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1896 rtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
.++....+..+. .+.+++|+++++.|++++.++ ++.++
T Consensus 266 -~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 266 -DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp -TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred -CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 466666664433 478899999999999888765 44333
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.04 E-value=2.4e-07 Score=110.42 Aligned_cols=225 Identities=13% Similarity=0.091 Sum_probs=152.8
Q ss_pred ceEEEEEecCC-CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCc
Q psy8748 1736 WVMSVAFAQSG-NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQ 1814 (2004)
Q Consensus 1736 ~ItsLafSPdg-~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~ 1814 (2004)
...+..|+|++ ..+++...++.|..|+..++. . ... .....+.++.+.+++.+++++.+ .|.+||..+++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~----~---~~~-~~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~ 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGR----K---TVH-ALPFMGSALAKISDSKQLIASDD-GLFLRDTATGV 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE----E---EEE-ECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc----E---EEE-ECCCcceEEEEeCCCeEEEEECC-CEEEEECCCCc
Confidence 35678899974 466666678899999987542 1 111 12356788888877777777755 49999998887
Q ss_pred eeEEeecc---ccCCeEEEEECCCCCEEEEEEC------CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE-
Q psy8748 1815 RIHEVAQA---HIGDVVSISLSPDGQYFVTGSV------DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATG- 1884 (2004)
Q Consensus 1815 ~i~~il~~---h~~~ItsLafSPdg~~LaSGS~------DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSg- 1884 (2004)
........ ....+.+++++|+|+++++... .+.|..+| +++.. .+.........++|+|+++.++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEE
T ss_pred EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEE
Confidence 54221111 1235889999999996655432 25666666 45433 333333457899999999877655
Q ss_pred ECCCeEEEEEcc--CC-cee--EEE-cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEE
Q psy8748 1885 SEDKTARLFDIR--AD-QQI--ATY-LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSI 1958 (2004)
Q Consensus 1885 S~DGtIrIWDLr--tg-k~i--~t~-~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsL 1958 (2004)
+.++.|.+||+. ++ ... ..+ ...........++++++|++.++...++.|.+||. +++.+..+..+...++++
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 456899999986 55 321 111 11222345678999999998887777789999998 677777777777789999
Q ss_pred EEc-CCCCEEEEEECC
Q psy8748 1959 SLS-PNGMALVTSSWD 1973 (2004)
Q Consensus 1959 aFS-PDg~~LaSgS~D 1973 (2004)
+|+ +++..|+.++..
T Consensus 277 af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 277 AFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEESTTSCEEEEEEBC
T ss_pred EEecCCCCEEEEEecC
Confidence 998 888777555443
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.02 E-value=1.9e-07 Score=109.50 Aligned_cols=229 Identities=15% Similarity=0.144 Sum_probs=155.0
Q ss_pred cccccceeEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1689 KGHINKVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~-~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
..+..--.+..|+++++ ++++...++.|..||..+++.. .+. ....+.+++++++|+++++ . ++.|.+||.+++.
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 33445566899999655 5666667899999999887653 333 3567999999999995554 3 5679999987542
Q ss_pred CCCcceEEEEEec--CccceeeeEEeCCCcEEEeec------------CCeEEEEECCCCceeEEeeccccCCeEEEEEC
Q psy8748 1768 STGAAKVIRELLG--YEGFLSSCRFIDDTTLLTGSG------------DMKIVTWNLETGQRIHEVAQAHIGDVVSISLS 1833 (2004)
Q Consensus 1768 ~~~~~k~i~sl~g--h~~~Vssvafsdd~~LlSgS~------------DGtI~IWDl~tg~~i~~il~~h~~~ItsLafS 1833 (2004)
......... ....+..+.+.+++.+++++. .+.|+.+|.. ++.. .. .........++|+
T Consensus 85 ----~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~-~~~~~~pngi~~s 157 (297)
T 3g4e_A 85 ----AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KY-FDQVDISNGLDWS 157 (297)
T ss_dssp ----EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EE-EEEESBEEEEEEC
T ss_pred ----EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EE-eeccccccceEEc
Confidence 222222111 123466778877777766652 2345555543 3322 22 2334456889999
Q ss_pred CCCCEEEEE-ECCCeEEEEEC--CCCeE-----EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEc
Q psy8748 1834 PDGQYFVTG-SVDKSCKLWDF--REKKC-----VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1834 Pdg~~LaSG-S~DGsIrIWDl--rs~k~-----I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~ 1905 (2004)
|+++.++++ +.++.|.+||+ .++.. ...+..+...+..++++++|++.++...++.|.+||..+++....+.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 999977555 45788999987 44432 22222334568899999999888777778899999999898887775
Q ss_pred CCCCCCCeEEEEEc-CCCCEEEEEeC
Q psy8748 1906 PPNKNSGFTSCAVS-SSGRYIFCGSD 1930 (2004)
Q Consensus 1906 ~~~~~s~ItsLafS-PdG~~LaSGSs 1930 (2004)
.+ ...+++++|. |+++.|++++.
T Consensus 238 ~p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 238 LP--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred CC--CCCceEEEEeCCCCCEEEEEcC
Confidence 44 2568999998 88887776654
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.02 E-value=3.7e-09 Score=130.10 Aligned_cols=172 Identities=16% Similarity=0.103 Sum_probs=133.6
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------eEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN-----------KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk-----------~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
.++.+++++.+.++++|+.++ +++|++++.+ ...... +.. |+.++| ++++|+++ .+|.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999885 6669865433 112333 556 999999 89999999 889999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
+.... .......+...+..+.+...+ +++++.||.|.+||+.++.... +...|+|++|+|+| ++.|
T Consensus 113 v~sl~------~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg 178 (388)
T 1xip_A 113 LEELS------EFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVL 178 (388)
T ss_dssp SSSTT------CEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEE
T ss_pred chhhh------ccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEE
Confidence 97643 122334445566777766544 8889999999999999887642 34689999999999 6889
Q ss_pred ECCCeEEEEECCCCeE--EEEE------e---cCCCCeEEEEEeCCCCEEEEEE
Q psy8748 1843 SVDKSCKLWDFREKKC--VQTF------F---GHEADVNSVCFHPSGLAFATGS 1885 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~--I~tl------~---~h~s~ItsIafSPdg~~LaSgS 1885 (2004)
..||.+++|+...+.. ..++ . +|...|.++.|.+++.++++-+
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999999887775 5555 2 3678899999999998887633
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.01 E-value=5.3e-08 Score=114.44 Aligned_cols=233 Identities=12% Similarity=0.100 Sum_probs=157.8
Q ss_pred eEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec-CC
Q psy8748 1726 KTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG-DM 1803 (2004)
Q Consensus 1726 ~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~-DG 1803 (2004)
.+..+........+..|+++++ .++++..++.|..|+.. +. ...+......+..+.+.+++.++++.. ++
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~ 107 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-------VDVLLDATAFTNGNAVDAQQRLVHCEHGRR 107 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-------EEEEEESCSCEEEEEECTTSCEEEEETTTT
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-------EEEEeCCCCccceeeECCCCCEEEEECCCC
Confidence 3444444556678899999998 66777778899999873 21 123334456678888887777777765 47
Q ss_pred eEEEEECCCCceeEEeecc----ccCCeEEEEECCCCCEEEE----EEC-------------CCeEEEEECCCCeEEEEE
Q psy8748 1804 KIVTWNLETGQRIHEVAQA----HIGDVVSISLSPDGQYFVT----GSV-------------DKSCKLWDFREKKCVQTF 1862 (2004)
Q Consensus 1804 tI~IWDl~tg~~i~~il~~----h~~~ItsLafSPdg~~LaS----GS~-------------DGsIrIWDlrs~k~I~tl 1862 (2004)
.|..||.. ++.. .+... ....+.+++++++|++.++ |.. .+.|+.||..+++.....
T Consensus 108 ~v~~~~~~-g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 108 AITRSDAD-GQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp EEEEECTT-SCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred EEEEECCC-CCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 89999986 5432 22111 1234678999999997775 332 256888887666543332
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEECC------CeEEEEEccCCcee--EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q psy8748 1863 FGHEADVNSVCFHPSGLAFATGSED------KTARLFDIRADQQI--ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNV 1934 (2004)
Q Consensus 1863 ~~h~s~ItsIafSPdg~~LaSgS~D------GtIrIWDLrtgk~i--~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsI 1934 (2004)
.......++|+|+++.++++... +.|.+|++..+... ..+.. ........++++++|++.+ ++.+ .|
T Consensus 186 --~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lwv-~~~~-gv 260 (305)
T 3dr2_A 186 --DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLWS-SSGT-GV 260 (305)
T ss_dssp --EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEEE-CCSS-EE
T ss_pred --cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEEE-ecCC-cE
Confidence 34567889999999988877665 68999998755411 11211 1123345688999999544 4444 49
Q ss_pred EEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q psy8748 1935 HVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQF 1975 (2004)
Q Consensus 1935 rIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGt 1975 (2004)
.+|+. .++.+..+..+. .+.+++|+++++.|+.++.++.
T Consensus 261 ~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 261 CVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred EEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 99997 677777776555 5899999999998888887653
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.01 E-value=5.8e-09 Score=128.38 Aligned_cols=172 Identities=13% Similarity=0.085 Sum_probs=132.2
Q ss_pred ceeeeEEeCCCc-EEEeecCCeEEEEECCCCc---------eeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1784 FLSSCRFIDDTT-LLTGSGDMKIVTWNLETGQ---------RIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1784 ~Vssvafsdd~~-LlSgS~DGtI~IWDl~tg~---------~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
.+..+++++... +++|+.+ .+.+|+..... ........+.. |+.++| ++++|+++ .+|.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 467777776554 5555555 56669865332 11111224556 999999 89999999 7899999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCe
Q psy8748 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNN 1933 (2004)
Q Consensus 1854 rs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGs 1933 (2004)
++.........+...+.++.+.+. .+++++.||.+.+||+.++..... ...|++++|+|+| ++.|..||+
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~------~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL------AQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE------EESEEEEEECSSE--EEEEETTSC
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccc------cCCceEEEEcCCc--eEEEEcCCc
Confidence 877666667777888888877655 388889999999999998776532 2579999999999 788999999
Q ss_pred EEEEECCCCee--eEEE------c---cCCCCeEEEEEcCCCCEEEEE
Q psy8748 1934 VHVWDLLKTTH--NGVL------S---GHENRVTSISLSPNGMALVTS 1970 (2004)
Q Consensus 1934 IrIWDL~tge~--l~tL------~---gHs~~VtsLaFSPDg~~LaSg 1970 (2004)
+++|+...++. ..++ . +|...|.+|.|.+++.++++=
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 99999888775 5566 3 478899999999999988874
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.01 E-value=1.5e-07 Score=116.29 Aligned_cols=237 Identities=8% Similarity=0.108 Sum_probs=161.2
Q ss_pred CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCC--eEEEEECC
Q psy8748 1735 AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDM--KIVTWNLE 1811 (2004)
Q Consensus 1735 ~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DG--tI~IWDl~ 1811 (2004)
.....++|+++++++++...++.|++||.+++. ....... ..... +++.+++ .++++..++ .|..|+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~------~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~ 202 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK------VTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA 202 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE------EEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE------EEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence 357899999999988888888999999987542 2122222 22233 7777554 466666655 89999987
Q ss_pred CCceeEEe--e-ccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEE----EecCCCCe-E-EEEEeCC-CCEE
Q psy8748 1812 TGQRIHEV--A-QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQT----FFGHEADV-N-SVCFHPS-GLAF 1881 (2004)
Q Consensus 1812 tg~~i~~i--l-~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~t----l~~h~s~I-t-sIafSPd-g~~L 1881 (2004)
.+...... . ......+.+++++|++..|+++..++.|+.||..++..... ..++...- . .++|+|+ +.++
T Consensus 203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 66543222 1 21445678899999666666777788999999987763322 12222222 3 9999995 5555
Q ss_pred EEEECCCeEEEEEccCCceeEEEcCCC-------------CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEE
Q psy8748 1882 ATGSEDKTARLFDIRADQQIATYLPPN-------------KNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGV 1947 (2004)
Q Consensus 1882 aSgS~DGtIrIWDLrtgk~i~t~~~~~-------------~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~t 1947 (2004)
++...++.|+.|+.... . ..+.... .-.....++++++|+++++-. .++.|+.|+..++... .
T Consensus 283 v~d~~~~~I~~~~~~g~-~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~ 359 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGE-C-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-T 359 (409)
T ss_dssp EEETTTTEEEEECTTCC-E-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-E
T ss_pred EEeCCCCEEEEEecCCC-E-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-E
Confidence 56666789999997643 2 2221111 023478899999999777777 7899999998777643 3
Q ss_pred EccC---------------CCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1948 LSGH---------------ENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1948 L~gH---------------s~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
+.++ -....+++++++|.++++-..++.|+.++++
T Consensus 360 ~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 360 VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 4333 2458999999998888887888888887753
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.99 E-value=1.4e-08 Score=133.64 Aligned_cols=246 Identities=10% Similarity=0.080 Sum_probs=159.8
Q ss_pred ccccceeEEEEeCCCCEEEEE-----eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCC--------
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSG-----SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDN-------- 1756 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASG-----S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG-------- 1756 (2004)
+|...+..++|||||++||-+ +.+..|++||+.+|+.+... .+......++|+ |++.|+.++.++
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 466789999999999998843 22357999999999865431 111113567899 999998888774
Q ss_pred -----eEEEEEcCCCCCCCcceEEEEEec-CccceeeeEEeCCCc-EEE-ee---cCCeEEEEECCCCceeEEeeccccC
Q psy8748 1757 -----MCTVYDLNNRDSTGAAKVIRELLG-YEGFLSSCRFIDDTT-LLT-GS---GDMKIVTWNLETGQRIHEVAQAHIG 1825 (2004)
Q Consensus 1757 -----tIrVWDl~t~~~~~~~k~i~sl~g-h~~~Vssvafsdd~~-LlS-gS---~DGtI~IWDl~tg~~i~~il~~h~~ 1825 (2004)
.|++|++.+... ....+..... +......+.+++++. ++. .. ..+.|+++|+.++......+..+..
T Consensus 204 ~~~~~~v~~~~lgt~~~--~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQE--DDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp -CCCCEEEEEETTSCGG--GCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred cCCCcEEEEEECCCCcc--cceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence 389999875421 1122222223 344566778886665 333 22 2358999999876422222334444
Q ss_pred CeEEEEECCCCCEEEEEEC-C---CeEEEEECCCCeE--EEEEecCCCCeEEEEEeCCCCEEEEEECCC---eEEEEEcc
Q psy8748 1826 DVVSISLSPDGQYFVTGSV-D---KSCKLWDFREKKC--VQTFFGHEADVNSVCFHPSGLAFATGSEDK---TARLFDIR 1896 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSGS~-D---GsIrIWDlrs~k~--I~tl~~h~s~ItsIafSPdg~~LaSgS~DG---tIrIWDLr 1896 (2004)
..... ++++|..|+..+. + +.|..+|+.++.. ...+..+...+. .|++++++|+....++ .|++||+.
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 45444 6666776665553 2 5799999987653 234556666655 8899998877766544 68999987
Q ss_pred CCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCee
Q psy8748 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD----NNVHVWDLLKTTH 1944 (2004)
Q Consensus 1897 tgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD----GsIrIWDL~tge~ 1944 (2004)
.+ ....+..+ ....+..+.++++++.++....+ ++|+.||+.+++.
T Consensus 359 g~-~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 359 GK-RVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp SC-EEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CC-eeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 44 44444332 23456677888888877766554 8899999987754
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.95 E-value=4.3e-07 Score=108.24 Aligned_cols=223 Identities=16% Similarity=0.059 Sum_probs=150.3
Q ss_pred ceeEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1694 KVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1694 ~VtsLaFSPDG~-~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
-..+.+|+|+++ ++++...++.|..||..+++.. .+. ....+.+++|+++|+++++. .+ .|.+||..++. .
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~----~ 121 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV----L 121 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC----E
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc----E
Confidence 456889999755 5566667899999998877543 333 34679999999999877765 44 48999986542 1
Q ss_pred eEEEEEec--CccceeeeEEeCCCcEEEeec-------CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE
Q psy8748 1773 KVIRELLG--YEGFLSSCRFIDDTTLLTGSG-------DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1773 k~i~sl~g--h~~~Vssvafsdd~~LlSgS~-------DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
........ ....+..+.+.+++.+++++. .+.|+.+| +++.. .+ .........++|+|+++.++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~-~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KL-FADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EE-EEEESSEEEEEECTTSCEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-Ee-eCCCcccCCeEEcCCCCEEEEEE
Confidence 11111111 123567788887777666653 25677777 44432 22 22334567899999999776654
Q ss_pred -CCCeEEEEECC--CC-e-----EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeE
Q psy8748 1844 -VDKSCKLWDFR--EK-K-----CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFT 1914 (2004)
Q Consensus 1844 -~DGsIrIWDlr--s~-k-----~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~It 1914 (2004)
.++.|.+||+. ++ . ....+......+.++++.++|++.++...++.|.+||. +++....+..+ ...++
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~--~~~~~ 274 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP--GKQTT 274 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--CSBEE
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC--CCCcE
Confidence 56899999986 55 2 22233333456788999999987777767789999998 56666666433 24689
Q ss_pred EEEEc-CCCCEEEEEeCC
Q psy8748 1915 SCAVS-SSGRYIFCGSDD 1931 (2004)
Q Consensus 1915 sLafS-PdG~~LaSGSsD 1931 (2004)
+++|+ ++++.|++++..
T Consensus 275 ~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 275 CPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEESTTSCEEEEEEBC
T ss_pred EEEEecCCCCEEEEEecC
Confidence 99998 888877666543
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.93 E-value=4.3e-09 Score=126.22 Aligned_cols=263 Identities=11% Similarity=0.069 Sum_probs=169.6
Q ss_pred cceeEEEEeCCCCEEEEEe--CCCeEEEEECCCCceEEEee-------CCCCceEEEEEecCCCEEEEeec-----CCeE
Q psy8748 1693 NKVNSVHYSGDSRHCVSGS--LDGKLIIWDTWTGNKTQVIP-------LRSAWVMSVAFAQSGNFVACGGM-----DNMC 1758 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS--~DGtIrVWDl~Tgk~l~ti~-------~Ht~~ItsLafSPdg~~LaSGS~-----DGtI 1758 (2004)
..+..++++++|+.+++.. .++.++||.+.+++. ..+. .+-..+.+++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6889999999999988864 234355665545543 3332 24467999999999887666543 5789
Q ss_pred EEEEcCCCCCCCcceEEEEEec------CccceeeeEEeC-CCcEEEe-e---cCCeEEEEECCCCceeEEeeccccCCe
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLG------YEGFLSSCRFID-DTTLLTG-S---GDMKIVTWNLETGQRIHEVAQAHIGDV 1827 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~g------h~~~Vssvafsd-d~~LlSg-S---~DGtI~IWDl~tg~~i~~il~~h~~~I 1827 (2004)
.+||+.+++ ....+.. +......+++.. ++.++++ . .++.|.+||..+++.. ....+|....
T Consensus 96 ~~~d~~tg~------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~-r~~~~~~~~~ 168 (343)
T 2qe8_A 96 VAWDTLNNQ------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA-RVLQGYPGIA 168 (343)
T ss_dssp EEEETTTTE------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE-EECTTCTTTS
T ss_pred EEEECCCCe------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE-EEecCCCccc
Confidence 999987542 2222221 223456777774 4554444 3 5789999999988754 3333322110
Q ss_pred E-EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC-eEEEEEcc---CCc---
Q psy8748 1828 V-SISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK-TARLFDIR---ADQ--- 1899 (2004)
Q Consensus 1828 t-sLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG-tIrIWDLr---tgk--- 1899 (2004)
. ...+..+|..+.+.+.+|.+..|. ..+..++|+|+|+.++++..++ .+..++.. .+.
T Consensus 169 ~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~ 234 (343)
T 2qe8_A 169 PEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTD 234 (343)
T ss_dssp CCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCH
T ss_pred ccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCCh
Confidence 0 123344676777777777776553 2367899999999888887766 55555532 110
Q ss_pred -----eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc-CCCCeEEEEEcCCCCEEEEEECC
Q psy8748 1900 -----QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG-HENRVTSISLSPNGMALVTSSWD 1973 (2004)
Q Consensus 1900 -----~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g-Hs~~VtsLaFSPDg~~LaSgS~D 1973 (2004)
.+... .+......++++++|+++++...++.|.+||..+++....... +...+.+++|.+++.++++.+..
T Consensus 235 ~~~~~~~~~~---g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 235 AELGSKIERY---SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp HHHHTTCEEE---EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred hhhhcceEec---ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 00111 1112345689999999999988899999999856764433332 24568999999999988888766
Q ss_pred CeEEEEE
Q psy8748 1974 QFVKVWQ 1980 (2004)
Q Consensus 1974 GtIrIWd 1980 (2004)
+.+.+|.
T Consensus 312 ~~~~~f~ 318 (343)
T 2qe8_A 312 HHSAPLN 318 (343)
T ss_dssp GGSGGGB
T ss_pred ccccccc
Confidence 6554443
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.92 E-value=8.8e-08 Score=125.99 Aligned_cols=240 Identities=14% Similarity=0.134 Sum_probs=157.4
Q ss_pred CCCceEEEEEecCCCEEEEe-----ecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCC----
Q psy8748 1733 RSAWVMSVAFAQSGNFVACG-----GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM---- 1803 (2004)
Q Consensus 1733 Ht~~ItsLafSPdg~~LaSG-----S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DG---- 1803 (2004)
+...+..++|+|||++++.+ +....|++||+.+++. ....+.+ .....+.|+++..|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~-----~~~~~~~--~k~~~~~WsDg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP-----LETPLKD--VKFSGISWLGNEGFFYSSYDKPDGS 199 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE-----EEEEEEE--EESCCCEEETTTEEEEEESSCCC--
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC-----CccccCC--ceeccEEEeCCCEEEEEEecCcccc
Confidence 45578899999999988853 3335799999987641 1111111 113566788555677776663
Q ss_pred ---------eEEEEECCCCceeE-Eee--cc-ccCCeEEEEECCCCCEEEEEEC----CCeEEEEECCCCe-EEEEEecC
Q psy8748 1804 ---------KIVTWNLETGQRIH-EVA--QA-HIGDVVSISLSPDGQYFVTGSV----DKSCKLWDFREKK-CVQTFFGH 1865 (2004)
Q Consensus 1804 ---------tI~IWDl~tg~~i~-~il--~~-h~~~ItsLafSPdg~~LaSGS~----DGsIrIWDlrs~k-~I~tl~~h 1865 (2004)
.|++|++.++.... .+. .. +...+.++.|+|||++++.... ++.|+++|+.++. ....+..+
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 49999998775321 122 22 3445788999999998866543 2489999997763 34455556
Q ss_pred CCCeEEEEEeCCCCEEEEEEC-C---CeEEEEEccCCce--eEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CC--eEEE
Q psy8748 1866 EADVNSVCFHPSGLAFATGSE-D---KTARLFDIRADQQ--IATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DN--NVHV 1936 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSgS~-D---GtIrIWDLrtgk~--i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DG--sIrI 1936 (2004)
....... |+++|..|+..+. + +.|..+|+.++.. ...+.... ..+. .|++++++|+.... +| .|++
T Consensus 280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER--QQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC--SSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC--CCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 5555555 6666666555443 3 6799999987654 23343322 2333 88999998877665 44 6899
Q ss_pred EECCCCeeeEEEc-cCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCe
Q psy8748 1937 WDLLKTTHNGVLS-GHENRVTSISLSPNGMALVTSSWD----QFVKVWQESNTI 1985 (2004)
Q Consensus 1937 WDL~tge~l~tL~-gHs~~VtsLaFSPDg~~LaSgS~D----GtIrIWdlstg~ 1985 (2004)
||+..+. ...+. .+.+.+..+.+++++..++....+ +.|+.||+.+++
T Consensus 355 ~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 355 FDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp ECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 9987544 44443 345667888888888876665544 889999998775
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.89 E-value=8.8e-08 Score=126.02 Aligned_cols=276 Identities=14% Similarity=0.102 Sum_probs=180.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCC-C----CceEEEEEecCCCEEEEeec------CCeEEEEEcCCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLR-S----AWVMSVAFAQSGNFVACGGM------DNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~H-t----~~ItsLafSPdg~~LaSGS~------DGtIrVWDl~t~~~~~~~ 1772 (2004)
+..++.++.|+.|..+|..+|+.+..+..+ . ..+.+--.. .+..+++++. +|.|+.||..+++.....
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 567888889999999999999999988765 2 112111111 2445555543 799999999876532211
Q ss_pred eEEEEEe--------------------------cCccceeeeEEe-CCCcEEEeecCC-------------------eEE
Q psy8748 1773 KVIRELL--------------------------GYEGFLSSCRFI-DDTTLLTGSGDM-------------------KIV 1806 (2004)
Q Consensus 1773 k~i~sl~--------------------------gh~~~Vssvafs-dd~~LlSgS~DG-------------------tI~ 1806 (2004)
....... +.......+.+. .++.+++++.++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 1100000 000011234444 345677766654 599
Q ss_pred EEECCCCceeEEeecccc--------CCeEEEEECCCC---CEEEEEECCCeEEEEECCCCeEEEEEecCC---------
Q psy8748 1807 TWNLETGQRIHEVAQAHI--------GDVVSISLSPDG---QYFVTGSVDKSCKLWDFREKKCVQTFFGHE--------- 1866 (2004)
Q Consensus 1807 IWDl~tg~~i~~il~~h~--------~~ItsLafSPdg---~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~--------- 1866 (2004)
.+|..+|+....+...+. ....-+....+| +.+++++.+|.++++|..+++.+..+....
T Consensus 287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~ 366 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK 366 (677)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence 999999998876543321 122223333467 688999999999999999999887664221
Q ss_pred --CCe------------------------EEEEEeCCCCEEEEEECC---------------------------------
Q psy8748 1867 --ADV------------------------NSVCFHPSGLAFATGSED--------------------------------- 1887 (2004)
Q Consensus 1867 --s~I------------------------tsIafSPdg~~LaSgS~D--------------------------------- 1887 (2004)
.++ ..++++|++.++++...+
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 446 (677)
T 1kb0_A 367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF 446 (677)
T ss_dssp TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence 011 156889988888776432
Q ss_pred ----------CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCC-CCeE
Q psy8748 1888 ----------KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHE-NRVT 1956 (2004)
Q Consensus 1888 ----------GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs-~~Vt 1956 (2004)
|.|..||+.+++....+... ..+....+...+..+++|+.||.+++||.++++.+..+.... ..-.
T Consensus 447 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 523 (677)
T 1kb0_A 447 NAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAA 523 (677)
T ss_dssp CSSCCCSCCEEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ccccCCCCCccEEEEEeCCCCcEEeecCCC---CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccC
Confidence 78999999999998887432 223334566778899999999999999999999999886433 2234
Q ss_pred EEEEcCCCCEEEEE-EC----------------CCeEEEEECCC
Q psy8748 1957 SISLSPNGMALVTS-SW----------------DQFVKVWQESN 1983 (2004)
Q Consensus 1957 sLaFSPDg~~LaSg-S~----------------DGtIrIWdlst 1983 (2004)
-+.|..+|+.+++. +. .+.+.+|.+..
T Consensus 524 p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 524 PSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 45666788654433 22 36788888773
No 227
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.85 E-value=1.8e-07 Score=112.23 Aligned_cols=225 Identities=15% Similarity=0.147 Sum_probs=143.9
Q ss_pred ccccceeEEEEeCCCCEEEEEeC-----CCeEEEEECCCCceEEEeeCC------CCceEEEEEecCCCE-EEEee---c
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSL-----DGKLIIWDTWTGNKTQVIPLR------SAWVMSVAFAQSGNF-VACGG---M 1754 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~-----DGtIrVWDl~Tgk~l~ti~~H------t~~ItsLafSPdg~~-LaSGS---~ 1754 (2004)
+|...+.+++++++|+++++-.. ++.|.+||+.+++.+..+... ...+..+++++++.. +++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 36678999999999886665433 578999999999877776532 235689999986544 45544 6
Q ss_pred CCeEEEEEcCCCCCCCcceEEEEEecCcccee-eeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEE
Q psy8748 1755 DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS-SCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832 (2004)
Q Consensus 1755 DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vs-svafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf 1832 (2004)
++.|.+||..++. ..+...+|..... ...+. ++..+.+...+|.+..|. ..+..++|
T Consensus 144 ~~~i~v~d~~~g~------~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~ 202 (343)
T 2qe8_A 144 KAALIRVDLQTGL------AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVL 202 (343)
T ss_dssp GCEEEEEETTTCC------EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC---------------CCEEEEEE
T ss_pred CCeEEEEECCCCC------EEEEecCCCcccccccceeECCEEEEeccCCCceecee---------------cccceeEe
Confidence 7899999987542 2233322211110 01111 222344455566554442 23578999
Q ss_pred CCCCCEEEEEECCC-eEEEEECC---CCe--------EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce
Q psy8748 1833 SPDGQYFVTGSVDK-SCKLWDFR---EKK--------CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ 1900 (2004)
Q Consensus 1833 SPdg~~LaSGS~DG-sIrIWDlr---s~k--------~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~ 1900 (2004)
+|+|+.++++..++ .+..++.. .+. .+. ..++......++++++|+++++...++.|.+||..+++.
T Consensus 203 s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 203 DAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp CTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred ccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE
Confidence 99999999888766 55555532 110 011 113344567899999999998888899999999855654
Q ss_pred eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy8748 1901 IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVW 1937 (2004)
Q Consensus 1901 i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIW 1937 (2004)
..... .........+++.++|+++++.+..+.+.+|
T Consensus 282 ~~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 282 KLLVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp EEEEE-CGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred EEEEE-CCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 33332 2223457899999999888887655544433
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.84 E-value=3.7e-08 Score=115.12 Aligned_cols=262 Identities=13% Similarity=0.098 Sum_probs=173.1
Q ss_pred eEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEE
Q psy8748 1696 NSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVI 1775 (2004)
Q Consensus 1696 tsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i 1775 (2004)
.+..+..++. +..++.++.|..|| .+++.......+...+.++...+++. +.+++.+ +..||. +++.......
T Consensus 23 ~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~- 95 (330)
T 3hxj_A 23 SSPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDT- 95 (330)
T ss_dssp CCCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-
T ss_pred cCceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEEC-
Confidence 3445555554 66677788999999 88888776655555566777766665 4445444 777775 3322111111
Q ss_pred EEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCC
Q psy8748 1776 RELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855 (2004)
Q Consensus 1776 ~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs 1855 (2004)
........... ++.+++++.++.|..+|.. ++...... .....+.++...+++. +++++.++.|..||..
T Consensus 96 -----~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~- 165 (330)
T 3hxj_A 96 -----KKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD- 165 (330)
T ss_dssp ----------CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-
T ss_pred -----CCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-
Confidence 11111222222 6778889999999999998 76654432 2334456667776776 6667888999999998
Q ss_pred CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q psy8748 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVH 1935 (2004)
Q Consensus 1856 ~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIr 1935 (2004)
++....+......+.++...+++..+ .++ +.+..|| .+++....+... ...+.++..+++|. +.+++.++.|.
T Consensus 166 g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~--~~~~~~~~~~~~g~-l~v~t~~~gl~ 238 (330)
T 3hxj_A 166 GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAG--YWTVTRPAISEDGT-IYVTSLDGHLY 238 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEECCS--SCCCSCCEECTTSC-EEEEETTTEEE
T ss_pred CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccC--CcceeceEECCCCe-EEEEcCCCeEE
Confidence 87777776666667778887787644 444 7899999 777777666432 24567778888875 55566788888
Q ss_pred EEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1936 VWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1936 IWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
.+| .+++....+......+..+.+.+++. |..++.+|.|..+|.++
T Consensus 239 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~~g 284 (330)
T 3hxj_A 239 AIN-PDGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINPDG 284 (330)
T ss_dssp EEC-TTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECTTS
T ss_pred EEC-CCCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECCCC
Confidence 887 46666666655544455566665664 67778888899999743
No 229
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.83 E-value=7.7e-08 Score=112.39 Aligned_cols=268 Identities=12% Similarity=0.066 Sum_probs=176.2
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
+...+.++...++|. +..++.+ |..+|. +++....+...........+. +..+.+++.++.+..+|.. +.
T Consensus 58 ~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~--- 127 (330)
T 3hxj_A 58 GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GT--- 127 (330)
T ss_dssp GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SC---
T ss_pred CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CC---
Confidence 334567777777765 4445444 888885 666554443333323333333 5667778888989999876 32
Q ss_pred cceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrI 1850 (2004)
...........+.++....++.+++++.++.|..||.. ++...... .....+.++.+.+++.. ++++ +.|..
T Consensus 128 ---~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~~g~l-~v~t--~~l~~ 199 (330)
T 3hxj_A 128 ---EKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFK-TNDAITSAASIGKDGTI-YFGS--DKVYA 199 (330)
T ss_dssp ---EEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTCCE-EEES--SSEEE
T ss_pred ---EEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEe-cCCCceeeeEEcCCCEE-EEEe--CEEEE
Confidence 22222333444555566667788899999999999998 76654442 23445667778777774 4444 78999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1851 WDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1851 WDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
|| .+++...........+.++...++|. +++++.++.+..+|. +++....+.... ..+..+.+.++| .|.+|+.
T Consensus 200 ~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~--~~~~~~~~~~~g-~l~v~t~ 273 (330)
T 3hxj_A 200 IN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGK--RIESSPVIGNTD-TIYFGSY 273 (330)
T ss_dssp EC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSS--CCCSCCEECTTS-CEEEECT
T ss_pred EC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCC--CccccceEcCCC-eEEEecC
Confidence 99 77777777666666788888888875 556777888999984 566666554322 223344555555 5667788
Q ss_pred CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1931 DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1931 DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
+|.|..+|. +++....+......+.++...++|. |..++.+|.+++...+..
T Consensus 274 ~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 274 DGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp TCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred CCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 889999995 7777777765566777888877876 566888999998877654
No 230
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.81 E-value=1.6e-06 Score=113.95 Aligned_cols=282 Identities=11% Similarity=0.069 Sum_probs=186.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCc----------e-EEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAW----------V-MSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~----------I-tsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
+..++.++.++.|..+|..+|+.+..+...... + ..+.+ .+..+++++.||.|..+|..+++.....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 456777788899999999999999888643221 0 11222 3567888889999999999876432211
Q ss_pred eEEEEEecC--ccceeeeEEeCCCcEEEeec------CCeEEEEECCCCceeEEeeccc---------------------
Q psy8748 1773 KVIRELLGY--EGFLSSCRFIDDTTLLTGSG------DMKIVTWNLETGQRIHEVAQAH--------------------- 1823 (2004)
Q Consensus 1773 k~i~sl~gh--~~~Vssvafsdd~~LlSgS~------DGtI~IWDl~tg~~i~~il~~h--------------------- 1823 (2004)
..... ...+.......++.++++.. +|.|+.+|..+|+.+.+.....
T Consensus 144 ----~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 144 ----QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp ----ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred ----ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence 11100 11111111123456666654 5899999999999887653210
Q ss_pred ---------cCCeEEEEECCCCCEEEEEECCC-------------------eEEEEECCCCeEEEEEecC--C-------
Q psy8748 1824 ---------IGDVVSISLSPDGQYFVTGSVDK-------------------SCKLWDFREKKCVQTFFGH--E------- 1866 (2004)
Q Consensus 1824 ---------~~~ItsLafSPdg~~LaSGS~DG-------------------sIrIWDlrs~k~I~tl~~h--~------- 1866 (2004)
......+++++++..+++++.++ .|..+|.++++.+..+... .
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~ 299 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence 00112468888888999888776 3999999999988877642 2
Q ss_pred CCeEEEEEeCCCC---EEEEEECCCeEEEEEccCCceeEEEcCCCC----------CC----------------------
Q psy8748 1867 ADVNSVCFHPSGL---AFATGSEDKTARLFDIRADQQIATYLPPNK----------NS---------------------- 1911 (2004)
Q Consensus 1867 s~ItsIafSPdg~---~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~----------~s---------------------- 1911 (2004)
.+.....+..+|+ .++.++.+|.++++|..+|+.+........ ..
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G 379 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG 379 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcc
Confidence 2233333334665 688899999999999999998744322110 00
Q ss_pred --CeEEEEEcCCCCEEEEEe------------------------------------CCCeEEEEECCCCeeeEEEccCCC
Q psy8748 1912 --GFTSCAVSSSGRYIFCGS------------------------------------DDNNVHVWDLLKTTHNGVLSGHEN 1953 (2004)
Q Consensus 1912 --~ItsLafSPdG~~LaSGS------------------------------------sDGsIrIWDL~tge~l~tL~gHs~ 1953 (2004)
.-..++++|+...+++.. .+|.|..||+.+++.+.....+.
T Consensus 380 ~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~- 458 (668)
T 1kv9_A 380 AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT- 458 (668)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-
T ss_pred ccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-
Confidence 011267888777666521 23889999999999988776432
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1954 RVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1954 ~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
++....+...+.+++.++.||.++.||..+++.+..++.
T Consensus 459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 459 HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 333334455778899999999999999999977665554
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.80 E-value=6.8e-07 Score=117.84 Aligned_cols=263 Identities=17% Similarity=0.143 Sum_probs=167.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCC--CCceEEEEEec--CCCEEEEee------cCCeEEEEEcCCCCCCCcce
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLR--SAWVMSVAFAQ--SGNFVACGG------MDNMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~H--t~~ItsLafSP--dg~~LaSGS------~DGtIrVWDl~t~~~~~~~k 1773 (2004)
+..++.++.||.|..+|..+|+.+..+... ......+..+| .+..+++++ .+|.|..||..+++......
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 457888889999999999999999887653 11111111111 133444443 37899999998775322111
Q ss_pred EEEEEe-------------------------cCccceeeeEEeC-CCcEEEeecCCe-------------------EEEE
Q psy8748 1774 VIRELL-------------------------GYEGFLSSCRFID-DTTLLTGSGDMK-------------------IVTW 1808 (2004)
Q Consensus 1774 ~i~sl~-------------------------gh~~~Vssvafsd-d~~LlSgS~DGt-------------------I~IW 1808 (2004)
...... +.......+.+.+ .+.+++++.++. |..|
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 000000 0001112344543 566777777764 9999
Q ss_pred ECCCCceeEEeecc-cc-------CCeEEEEECCCCC---EEEEEECCCeEEEEECCCCeEEEEEecCCC----------
Q psy8748 1809 NLETGQRIHEVAQA-HI-------GDVVSISLSPDGQ---YFVTGSVDKSCKLWDFREKKCVQTFFGHEA---------- 1867 (2004)
Q Consensus 1809 Dl~tg~~i~~il~~-h~-------~~ItsLafSPdg~---~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s---------- 1867 (2004)
|.++|+.+...... |. ..+.......+|+ .++.++.+|.++++|.++++.+........
T Consensus 281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 99999988766432 21 1222222223554 788999999999999999998744321110
Q ss_pred -----------------------------CeEEEEEeCCCCEEEEEEC--------------------------------
Q psy8748 1868 -----------------------------DVNSVCFHPSGLAFATGSE-------------------------------- 1886 (2004)
Q Consensus 1868 -----------------------------~ItsIafSPdg~~LaSgS~-------------------------------- 1886 (2004)
.-..++++|+...+++...
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 440 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP 440 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence 0113688888878777532
Q ss_pred -------------CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCC
Q psy8748 1887 -------------DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHEN 1953 (2004)
Q Consensus 1887 -------------DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~ 1953 (2004)
+|.|..||+.+++....+.... ......+...+..+++|+.||.++.||.++|+.+..++...+
T Consensus 441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~ 517 (689)
T 1yiq_A 441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASG 517 (689)
T ss_dssp SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccccCCCCCCCcceeEEEEECCCCCeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCC
Confidence 3789999999999988874332 222235566788999999999999999999999988875433
Q ss_pred C-eEEEEEcCCCCEEEE
Q psy8748 1954 R-VTSISLSPNGMALVT 1969 (2004)
Q Consensus 1954 ~-VtsLaFSPDg~~LaS 1969 (2004)
. -.-+.|..+|+..++
T Consensus 518 ~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 518 VMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cccCceEEEECCEEEEE
Confidence 2 244667778875433
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.77 E-value=2.5e-07 Score=113.29 Aligned_cols=256 Identities=11% Similarity=-0.057 Sum_probs=169.1
Q ss_pred eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee----------cCCeEEEEEcCCCCCCCcceEEEEEecC---
Q psy8748 1715 KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG----------MDNMCTVYDLNNRDSTGAAKVIRELLGY--- 1781 (2004)
Q Consensus 1715 tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS----------~DGtIrVWDl~t~~~~~~~k~i~sl~gh--- 1781 (2004)
+|.++|..+++.+.++.....+ .+.++||+++++++. .++.|.+||..+.+ ....+.-.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~------vv~~I~v~~~~ 118 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL------PIADIELPDAP 118 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC------EEEEEEETTSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC------EEEEEECCCcc
Confidence 8899999999999999876666 799999999888886 46889999998653 34443321
Q ss_pred ----ccceeeeEEeCCC-cEEEeec--CCeEEE--EECCCCceeEEeeccccCCeEEEEECCCC-CEEEEEECCCeEEEE
Q psy8748 1782 ----EGFLSSCRFIDDT-TLLTGSG--DMKIVT--WNLETGQRIHEVAQAHIGDVVSISLSPDG-QYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1782 ----~~~Vssvafsdd~-~LlSgS~--DGtI~I--WDl~tg~~i~~il~~h~~~ItsLafSPdg-~~LaSGS~DGsIrIW 1851 (2004)
......+.+++++ +++++.. +..|.+ +|..+ +..+..+ +. ..+.|++ ..+++.+.||.+.+.
T Consensus 119 ~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~--~~---~~~~p~g~~~~~~~~~dg~~~~v 190 (368)
T 1mda_H 119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA--SC---FHIHPGAAATHYLGSCPASLAAS 190 (368)
T ss_dssp SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS--SC---CCCEEEETTEEECCCCTTSCEEE
T ss_pred ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC--Cc---eEEccCCCeEEEEEcCCCCEEEE
Confidence 1235567777554 5666653 467888 88877 3233211 11 1123433 345556678888888
Q ss_pred ECCC-----CeEEEE----EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce--eEEEcCCC--------CCCC
Q psy8748 1852 DFRE-----KKCVQT----FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ--IATYLPPN--------KNSG 1912 (2004)
Q Consensus 1852 Dlrs-----~k~I~t----l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~--i~t~~~~~--------~~s~ 1912 (2004)
|+.+ ++.... +.....+. . .+++..++..+. +.+.+.|..+... ...+.... ....
T Consensus 191 d~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 191 DLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp ECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred ECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 8876 332210 11112233 3 666666666666 9999999865432 22221110 0011
Q ss_pred eEEEEEcCCCCEEEEEeC-C--------CeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC-EEEEEE-CCCeEEEEEC
Q psy8748 1913 FTSCAVSSSGRYIFCGSD-D--------NNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM-ALVTSS-WDQFVKVWQE 1981 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSs-D--------GsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~-~LaSgS-~DGtIrIWdl 1981 (2004)
...++++++|+.++++.. + +.+.++|+.+.+.+..+.... ...+++|++||+ .+++.. .++.|.++|+
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 122689999998887643 2 356799999999988876433 688999999997 566666 5999999999
Q ss_pred CCCeEEEEEEe
Q psy8748 1982 SNTIVWKVLKV 1992 (2004)
Q Consensus 1982 stg~l~k~Ik~ 1992 (2004)
.+++..+.++.
T Consensus 345 ~t~kvv~~I~v 355 (368)
T 1mda_H 345 ASDQDQSSVEL 355 (368)
T ss_dssp SSCEEEEECCC
T ss_pred CCCcEEEEEEC
Confidence 99876666553
No 233
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.77 E-value=1.3e-07 Score=115.64 Aligned_cols=245 Identities=10% Similarity=-0.019 Sum_probs=163.0
Q ss_pred EEEEeCCCCEEEEEe----------CCCeEEEEECCCCceEEEeeCC-------CCceEEEEEecCCCEEEEeec--CCe
Q psy8748 1697 SVHYSGDSRHCVSGS----------LDGKLIIWDTWTGNKTQVIPLR-------SAWVMSVAFAQSGNFVACGGM--DNM 1757 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS----------~DGtIrVWDl~Tgk~l~ti~~H-------t~~ItsLafSPdg~~LaSGS~--DGt 1757 (2004)
.++++||+++++++. .++.|.+||..+++.+.++... ......+.++|||++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999888876 3688999999999999998654 123568899999999998864 457
Q ss_pred EEE--EEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCC-----CceeEE---eeccccCCe
Q psy8748 1758 CTV--YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLET-----GQRIHE---VAQAHIGDV 1827 (2004)
Q Consensus 1758 IrV--WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~t-----g~~i~~---il~~h~~~I 1827 (2004)
+.+ +|..+ ...+.- .+. ..+.......+++.+.||.+.+.|..+ ++.... ...-...+.
T Consensus 149 v~V~~iD~~t---------v~~i~v-~~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~ 217 (368)
T 1mda_H 149 AGLSVPGASD---------DQLTKS-ASC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA 217 (368)
T ss_dssp EEEEETTTEE---------EEEEEC-SSC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE
T ss_pred EEEEEEchhh---------ceEEEC-CCc-eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc
Confidence 888 88753 222211 111 112222334566777888888889886 332210 011112232
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCe--EEEEEecC----------CCCeEEEEEeCCCCEEEEEEC-C-------
Q psy8748 1828 VSISLSPDGQYFVTGSVDKSCKLWDFREKK--CVQTFFGH----------EADVNSVCFHPSGLAFATGSE-D------- 1887 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS~DGsIrIWDlrs~k--~I~tl~~h----------~s~ItsIafSPdg~~LaSgS~-D------- 1887 (2004)
. .+++..++..+. +.+.+.|..... .+..+.-. ......++++|+++.++++.. +
T Consensus 218 ---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~ 292 (368)
T 1mda_H 218 ---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA 292 (368)
T ss_dssp ---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred ---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccccc
Confidence 3 556666666666 999999986532 22222110 011222789999998887643 2
Q ss_pred -CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE-EEEEe-CCCeEEEEECCCCeeeEEEccCCCCeEEEEEc
Q psy8748 1888 -KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY-IFCGS-DDNNVHVWDLLKTTHNGVLSGHENRVTSISLS 1961 (2004)
Q Consensus 1888 -GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~-LaSGS-sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFS 1961 (2004)
+.+.++|+.+++.+.++... .....++|++||++ +++.. .++.|.++|+.+++.+..+..... ..++++.
T Consensus 293 ~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~ 365 (368)
T 1mda_H 293 AENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQ 365 (368)
T ss_dssp EEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred CCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence 35779999999888776432 24788999999984 55555 589999999999999999875433 3455554
No 234
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.73 E-value=3.9e-05 Score=102.30 Aligned_cols=278 Identities=14% Similarity=0.093 Sum_probs=185.5
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeC-------CCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL-------RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~-------Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
..|.++...++|.+.+ |+.+ -|.+||..++........ ....|.++...++|... .|+.++-|..|+...
T Consensus 263 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~ 339 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIR 339 (795)
T ss_dssp SBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGG
T ss_pred CeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCc
Confidence 5689999988887444 4455 588999877765443221 23579999999888755 456666688888654
Q ss_pred CCCCCcceEEEEEe----cCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeec-------cccCCeEEEEECC
Q psy8748 1766 RDSTGAAKVIRELL----GYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ-------AHIGDVVSISLSP 1834 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~----gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~-------~h~~~ItsLafSP 1834 (2004)
.. ........ -....|.++....++.+.+|+.++.|..||..++........ -....|.++...+
T Consensus 340 ~~----~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~ 415 (795)
T 4a2l_A 340 NR----FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE 415 (795)
T ss_dssp GS----SEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET
T ss_pred cc----ceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC
Confidence 31 11111100 123457777777778899999998999999887764422111 1235689999988
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEe----cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC----
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFREKKCVQTFF----GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP---- 1906 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs~k~I~tl~----~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~---- 1906 (2004)
+|+.+.+|+.++.|..||..+++...... .....|.++...++|...+ |+.+ .+.+||..+++.......
T Consensus 416 ~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 416 KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTEEEECCBCTTCC
T ss_pred CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCeEEEcccccccc
Confidence 88868888888889999988776433221 1245789999888887544 4554 588999877654322111
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEc-------cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS-------GHENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~-------gHs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
.-....|.++..+++|++.+.. . +-+..||..+++. .+. .....|.++...++|.+.++.. . .|..|
T Consensus 494 ~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~ 567 (795)
T 4a2l_A 494 PVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCF 567 (795)
T ss_dssp BCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEE
T ss_pred ccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeE
Confidence 1123568899999998866654 4 4588899877665 222 1345799999999998655443 4 58889
Q ss_pred ECCCCe
Q psy8748 1980 QESNTI 1985 (2004)
Q Consensus 1980 dlstg~ 1985 (2004)
+..++.
T Consensus 568 d~~~~~ 573 (795)
T 4a2l_A 568 NEKDKQ 573 (795)
T ss_dssp ETTTTE
T ss_pred CCCCCc
Confidence 987764
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.72 E-value=8.8e-09 Score=125.46 Aligned_cols=255 Identities=11% Similarity=0.014 Sum_probs=143.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecC-
Q psy8748 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY- 1781 (2004)
Q Consensus 1703 DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh- 1781 (2004)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||..+++..... ..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~------~~~~ 79 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL------PFTI 79 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC------SCCH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee------eccC
Confidence 577899999999999999999999988876 45555556667878888889999999999766422111 111
Q ss_pred cccee-eeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEE
Q psy8748 1782 EGFLS-SCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1782 ~~~Vs-svafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~ 1860 (2004)
...+. ......++.+++++.++.|+.||..+|+........ . ...++|++..+++++.||.|+.||.++++.+.
T Consensus 80 ~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 80 PELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp HHHHTTCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCC-C----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 11111 111124567888899999999999999887554221 1 23456688899999999999999999988665
Q ss_pred EEecCCCCeEEEEEeCCC---CEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeE-EEEEcCCCCEE----EEEeCCC
Q psy8748 1861 TFFGHEADVNSVCFHPSG---LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFT-SCAVSSSGRYI----FCGSDDN 1932 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg---~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~It-sLafSPdG~~L----aSGSsDG 1932 (2004)
.+..+. .....+..+. ..+++++.||.|+.||.++++....+... .++. ...++++|... +.+ ++
T Consensus 155 ~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~pv~~~~~~~~dg~~~v~~~~~~--~~ 227 (369)
T 2hz6_A 155 NATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA---SPVVAFYVWQREGLRKVMHINVA--VE 227 (369)
T ss_dssp EEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS---SCEEEEEECTTSSCEEECCEEEE--HH
T ss_pred eEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC---CceEEEEEecCCceEeccceeec--cc
Confidence 543211 1222233322 46777889999999999999998877532 2333 34455566432 122 34
Q ss_pred eEEEEECCCCe----eeEEEccCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECC
Q psy8748 1933 NVHVWDLLKTT----HNGVLSGHENRVTSISLSP--NGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1933 sIrIWDL~tge----~l~tL~gHs~~VtsLaFSP--Dg~~LaSgS~DGtIrIWdls 1982 (2004)
.++.+|..+|+ ....+.. .+.+. +| .+..++.++.||.++.++..
T Consensus 228 ~l~~ld~~tG~~~~~~~W~~~~-~~~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 228 TLRYLTFMSGEVGRITKWKYPF-PKETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCC-CCHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred ceeeeehhcCCcccceeeeecc-Ccccc----ccccccceEEEecccCCEEecCcc
Confidence 45666665555 3332221 11111 12 34467778888888888765
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.67 E-value=1.2e-08 Score=124.25 Aligned_cols=203 Identities=11% Similarity=0.036 Sum_probs=112.9
Q ss_pred CCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccc
Q psy8748 1745 SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAH 1823 (2004)
Q Consensus 1745 dg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h 1823 (2004)
++..+++++.||.|+.||..+++. ...... +.+.+..+. ++..+++++.||.|+.||..+|+.+.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~------~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~ 79 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI------KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI 79 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE------EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE------EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC
Confidence 578899999999999999987642 222222 223333333 44467777899999999999888754432111
Q ss_pred cCCeE-EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeE
Q psy8748 1824 IGDVV-SISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIA 1902 (2004)
Q Consensus 1824 ~~~It-sLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~ 1902 (2004)
...+. +..+. .+..+++|+.||.|+.||.++++.+..+..+. ...++|++..+++++.||.|+.||.++++...
T Consensus 80 ~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 80 PELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp HHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 11110 00111 34567888889999999999999887775543 23456788889999999999999999998876
Q ss_pred EEcCCCCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeE-EEEEcCCCC
Q psy8748 1903 TYLPPNKNSGFTSCAVSSSG---RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVT-SISLSPNGM 1965 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSPdG---~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~Vt-sLaFSPDg~ 1965 (2004)
.+.... ....+++.++ ..+++++.||.|+.||..+|+.+..... ..++. ...++++|.
T Consensus 155 ~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 155 NATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred eEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence 653211 1122233332 5677888999999999999998887763 34443 344555664
No 237
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.64 E-value=4e-05 Score=102.12 Aligned_cols=282 Identities=8% Similarity=0.033 Sum_probs=187.0
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeC-------CCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL-------RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~-------Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
...|.++...++|.+.+ |+.++-+..||..+++....... ....|.++...++|.+.+.. .+| |.+|+..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~G-l~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FND-LNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SSC-EEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CCh-hheEcCC
Confidence 46789999888776544 44444589999877655433221 23569999998888766544 445 8888875
Q ss_pred CCCCCCcceEEEEE-----ecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeec-----cccCCeEEEEECC
Q psy8748 1765 NRDSTGAAKVIREL-----LGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ-----AHIGDVVSISLSP 1834 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl-----~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~-----~h~~~ItsLafSP 1834 (2004)
+.. ....... .-....|.++....++.+.+|+.++.|..|+..++........ -....|.++...+
T Consensus 291 ~~~----~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~ 366 (795)
T 4a2l_A 291 TDS----FASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK 366 (795)
T ss_dssp TTE----EEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred CCe----EEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence 431 1111100 0123467778777888899999999999998766543211110 1234699999988
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEec--------CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFREKKCVQTFFG--------HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~--------h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
+|+ +.+|+.++.|..||..++........ ....|.+++..++|+.+.+|+.++-+..||..+++.......
T Consensus 367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~ 445 (795)
T 4a2l_A 367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR 445 (795)
T ss_dssp TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence 876 66788888899999887654332211 235789999988888577788878899999887764332211
Q ss_pred --CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc------CCCCeEEEEEcCCCCEEEEEECCCeEEE
Q psy8748 1907 --PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG------HENRVTSISLSPNGMALVTSSWDQFVKV 1978 (2004)
Q Consensus 1907 --~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g------Hs~~VtsLaFSPDg~~LaSgS~DGtIrI 1978 (2004)
......|.++..+++|++.+.. .+ -+.+||..+++....... +...|.++...++|.+.+... +.|..
T Consensus 446 ~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~ 521 (795)
T 4a2l_A 446 NSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSV 521 (795)
T ss_dssp TSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEE
T ss_pred CCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEE
Confidence 1123568899999888865544 44 488999877654432211 236799999999998666544 45888
Q ss_pred EECCCCe
Q psy8748 1979 WQESNTI 1985 (2004)
Q Consensus 1979 Wdlstg~ 1985 (2004)
|+..++.
T Consensus 522 ~~~~~~~ 528 (795)
T 4a2l_A 522 FKQEGLD 528 (795)
T ss_dssp EEEETTE
T ss_pred EeCCCCe
Confidence 9887764
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.63 E-value=1.3e-05 Score=99.67 Aligned_cols=226 Identities=11% Similarity=0.078 Sum_probs=149.8
Q ss_pred cCCCEEEE-eecCCeEEEEEcCCCCCCCcceEEEEEe------c-CccceeeeEEeCCCcEEEeecC------CeEEEEE
Q psy8748 1744 QSGNFVAC-GGMDNMCTVYDLNNRDSTGAAKVIRELL------G-YEGFLSSCRFIDDTTLLTGSGD------MKIVTWN 1809 (2004)
Q Consensus 1744 Pdg~~LaS-GS~DGtIrVWDl~t~~~~~~~k~i~sl~------g-h~~~Vssvafsdd~~LlSgS~D------GtI~IWD 1809 (2004)
.+++++++ +..++.|.++|+.+.. ...+..+.+. . .......+...+++.++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p--~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNP--REPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCT--TSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCC--CCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEE
Confidence 66776655 5667899999986432 1234444442 0 1112334455566665555444 7899999
Q ss_pred CCCCceeEEeecccc--CCeEEEEECCCCCEEEEEE-------------------CCCeEEEEECCCCeEEEEEecC--C
Q psy8748 1810 LETGQRIHEVAQAHI--GDVVSISLSPDGQYFVTGS-------------------VDKSCKLWDFREKKCVQTFFGH--E 1866 (2004)
Q Consensus 1810 l~tg~~i~~il~~h~--~~ItsLafSPdg~~LaSGS-------------------~DGsIrIWDlrs~k~I~tl~~h--~ 1866 (2004)
..+++.+.+...+.. .--..+-|+|+++.+++.. .+..|.+||+.+++.+.++... .
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 999998866643322 2234578899999888874 3679999999998888877642 1
Q ss_pred CCeEEEEE--eCCCCEEEEEEC------CCeEEEEEccCCcee--EEE--cCC---C-----------CCCCeEEEEEcC
Q psy8748 1867 ADVNSVCF--HPSGLAFATGSE------DKTARLFDIRADQQI--ATY--LPP---N-----------KNSGFTSCAVSS 1920 (2004)
Q Consensus 1867 s~ItsIaf--SPdg~~LaSgS~------DGtIrIWDLrtgk~i--~t~--~~~---~-----------~~s~ItsLafSP 1920 (2004)
.....+.| +|+++++++++. +++|.+|....+... ..+ ... . .......+.+++
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 34456656 999999888774 668888776554321 111 100 0 013467899999
Q ss_pred CCCEEEEEeC-CCeEEEEECCC---CeeeEEEccCC--------------CCeEEEEEcCCCCEEEEEE
Q psy8748 1921 SGRYIFCGSD-DNNVHVWDLLK---TTHNGVLSGHE--------------NRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1921 dG~~LaSGSs-DGsIrIWDL~t---ge~l~tL~gHs--------------~~VtsLaFSPDg~~LaSgS 1971 (2004)
||++|+++.. .+.|.+||+.. .+.+..+.... +.-..++++|||++|+++.
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999998876 68999999853 34555543221 1358899999999999988
No 239
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.63 E-value=1.4e-05 Score=103.06 Aligned_cols=282 Identities=10% Similarity=0.031 Sum_probs=181.4
Q ss_pred CCEEEEEeC-CCeEEEEEC-CCCceEEEeeCCCCc-----------eEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1704 SRHCVSGSL-DGKLIIWDT-WTGNKTQVIPLRSAW-----------VMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1704 G~~LASGS~-DGtIrVWDl-~Tgk~l~ti~~Ht~~-----------ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
+..++.++. ++.|.-+|. .+|+.+..+...... -..++. .+..+++++.|+.+..+|..+++...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666676 899999999 999999887543210 011233 36678888889999999998764321
Q ss_pred cceEEEEEecCc--cceeeeEEeCCCcEEEeec------CCeEEEEECCCCceeEEeeccccC-----------------
Q psy8748 1771 AAKVIRELLGYE--GFLSSCRFIDDTTLLTGSG------DMKIVTWNLETGQRIHEVAQAHIG----------------- 1825 (2004)
Q Consensus 1771 ~~k~i~sl~gh~--~~Vssvafsdd~~LlSgS~------DGtI~IWDl~tg~~i~~il~~h~~----------------- 1825 (2004)
. .....+. ..+.+.-...++.+++++. +|.|+.+|..+|+.+.+.......
T Consensus 140 ~----~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 140 E----VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp E----EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred E----ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 1 1111110 0122111112456666665 799999999999987665322110
Q ss_pred -------------------C-eEEEEECCCCCEEEEEECC----------------CeEEEEECCCCeEEEEEecCCC--
Q psy8748 1826 -------------------D-VVSISLSPDGQYFVTGSVD----------------KSCKLWDFREKKCVQTFFGHEA-- 1867 (2004)
Q Consensus 1826 -------------------~-ItsLafSPdg~~LaSGS~D----------------GsIrIWDlrs~k~I~tl~~h~s-- 1867 (2004)
. ...++++++...++.++.+ +.|..+|.++++.+..+.....
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~ 295 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE 295 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcc
Confidence 0 0235677777777777642 3699999999998877753211
Q ss_pred -------CeEEEEEeCCCC---EEEEEECCCeEEEEEccCCceeEEEcCCCCC-----------CCe-------------
Q psy8748 1868 -------DVNSVCFHPSGL---AFATGSEDKTARLFDIRADQQIATYLPPNKN-----------SGF------------- 1913 (2004)
Q Consensus 1868 -------~ItsIafSPdg~---~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~-----------s~I------------- 1913 (2004)
...-+....+|+ .++.++.+|.++++|..+++.+..+...... .++
T Consensus 296 ~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~ 375 (571)
T 2ad6_A 296 WDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKG 375 (571)
T ss_dssp SCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCE
T ss_pred cccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCc
Confidence 111122234674 5778889999999999999988776432200 011
Q ss_pred -------------EEEEEcCCCCEEEEEe-------------------------------------CCCeEEEEECCCCe
Q psy8748 1914 -------------TSCAVSSSGRYIFCGS-------------------------------------DDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1914 -------------tsLafSPdG~~LaSGS-------------------------------------sDGsIrIWDL~tge 1943 (2004)
..++++|++..+++.. .+|.|..||..+++
T Consensus 376 ~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~ 455 (571)
T 2ad6_A 376 TNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK 455 (571)
T ss_dssp EEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC
T ss_pred eEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC
Confidence 2357888877777654 34789999999999
Q ss_pred eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1944 HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1944 ~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
.+..+... ..+.+..+...+..++.++.||.|+.||..+++....++.
T Consensus 456 ~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 456 AKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp EEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 88777532 2233333333566788899999999999999976555553
No 240
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.59 E-value=2.4e-05 Score=101.54 Aligned_cols=283 Identities=8% Similarity=0.027 Sum_probs=180.2
Q ss_pred CCEEEEEeC-CCeEEEEEC-CCCceEEEeeCCCCc-----------eEEEEEecCCCE----EEEeecCCeEEEEEcCCC
Q psy8748 1704 SRHCVSGSL-DGKLIIWDT-WTGNKTQVIPLRSAW-----------VMSVAFAQSGNF----VACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1704 G~~LASGS~-DGtIrVWDl-~Tgk~l~ti~~Ht~~-----------ItsLafSPdg~~----LaSGS~DGtIrVWDl~t~ 1766 (2004)
+..++.++. ++.|.-+|. .+|+.+..+...... ...+++.|.+.. +++++.|+.+..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456667777 899999999 999999887643321 123455444444 888888999999999876
Q ss_pred CCCCcceEEEEEecCc--cceeeeEEeCCCcEEEeec------CCeEEEEECCCCceeEEeeccccC-------------
Q psy8748 1767 DSTGAAKVIRELLGYE--GFLSSCRFIDDTTLLTGSG------DMKIVTWNLETGQRIHEVAQAHIG------------- 1825 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~--~~Vssvafsdd~~LlSgS~------DGtI~IWDl~tg~~i~~il~~h~~------------- 1825 (2004)
+.... .....+. ..+.+.-...++.+++++. +|.|+.+|..+|+.+.+.......
T Consensus 142 ~~~W~----~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 142 ETVWK----VENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp CEEEE----EECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CEEEe----ecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 43211 1111110 0122111112456666653 799999999999987665322110
Q ss_pred -----------------------Ce-EEEEECCCCCEEEEEECCC----------------eEEEEECCCCeEEEEEecC
Q psy8748 1826 -----------------------DV-VSISLSPDGQYFVTGSVDK----------------SCKLWDFREKKCVQTFFGH 1865 (2004)
Q Consensus 1826 -----------------------~I-tsLafSPdg~~LaSGS~DG----------------sIrIWDlrs~k~I~tl~~h 1865 (2004)
.+ ..+++.++...++.++.++ .|..+|.++++.+..+...
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 00 1356667778888887653 8999999999988777643
Q ss_pred CCC---------eEEEEEe-CCC---CEEEEEECCCeEEEEEccCCceeEEEcCCC-----------CCCC---------
Q psy8748 1866 EAD---------VNSVCFH-PSG---LAFATGSEDKTARLFDIRADQQIATYLPPN-----------KNSG--------- 1912 (2004)
Q Consensus 1866 ~s~---------ItsIafS-Pdg---~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~-----------~~s~--------- 1912 (2004)
... ..-+... .+| ..++.++.+|.++++|..+|+.+....... ...+
T Consensus 298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~ 377 (599)
T 1w6s_A 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTR 377 (599)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCC
T ss_pred CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCC
Confidence 221 1112222 467 467778899999999999999887664321 0000
Q ss_pred -----------------eEEEEEcCCCCEEEEEe---------------------------------------CCCeEEE
Q psy8748 1913 -----------------FTSCAVSSSGRYIFCGS---------------------------------------DDNNVHV 1936 (2004)
Q Consensus 1913 -----------------ItsLafSPdG~~LaSGS---------------------------------------sDGsIrI 1936 (2004)
-..++++|+..++++.. .+|.|..
T Consensus 378 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A 457 (599)
T 1w6s_A 378 MDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKA 457 (599)
T ss_dssp TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEE
T ss_pred CCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEE
Confidence 12356777766665531 3478999
Q ss_pred EECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1937 WDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1937 WDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
||+.+++.+...... .++..-.....+.+++.++.||.++.||.++|+.+-..+
T Consensus 458 ~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 458 YNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp ECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 999999888776421 122111122356678889999999999999997544444
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.57 E-value=2.5e-06 Score=109.27 Aligned_cols=250 Identities=13% Similarity=0.107 Sum_probs=151.7
Q ss_pred CCCCEEEEEeC-CCeEEEEECCCCceEEEeeCC-CCceEEEEE-e-cCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEE
Q psy8748 1702 GDSRHCVSGSL-DGKLIIWDTWTGNKTQVIPLR-SAWVMSVAF-A-QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRE 1777 (2004)
Q Consensus 1702 PDG~~LASGS~-DGtIrVWDl~Tgk~l~ti~~H-t~~ItsLaf-S-Pdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~s 1777 (2004)
+||++++.... ++.|.+.|+.+.+....+... ...+..+++ . |+++++++++.... -+ .+.+. .
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~-p~--~~dg~------~--- 166 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDET-PL--VNDGT------N--- 166 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCE-ES--SCSSS------S---
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEeccccc-cc--CCCCc------c---
Confidence 48888777655 567999999999988855432 245888888 5 89999988863210 00 00000 0
Q ss_pred EecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC------------
Q psy8748 1778 LLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD------------ 1845 (2004)
Q Consensus 1778 l~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D------------ 1845 (2004)
+ ....-.++.+.++|..+.+...++..+. ....++++|+|+++++.+.+
T Consensus 167 -------l----------~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~ 227 (595)
T 1fwx_A 167 -------M----------EDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA 227 (595)
T ss_dssp -------T----------TCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC
T ss_pred -------c----------ccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccc
Confidence 0 0000112334444444444443332211 22334444455444444422
Q ss_pred --------------------------CeEEEEECCC--CeE-EEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEc
Q psy8748 1846 --------------------------KSCKLWDFRE--KKC-VQTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDI 1895 (2004)
Q Consensus 1846 --------------------------GsIrIWDlrs--~k~-I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDL 1895 (2004)
+.|.+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+
T Consensus 228 ~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~ 306 (595)
T 1fwx_A 228 AEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV 306 (595)
T ss_dssp CSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred cccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEEC
Confidence 3478888877 444 444432 33567899999999877766 5788999999
Q ss_pred cCCce-----------eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CeeeEEEccCCCC
Q psy8748 1896 RADQQ-----------IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK----------TTHNGVLSGHENR 1954 (2004)
Q Consensus 1896 rtgk~-----------i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t----------ge~l~tL~gHs~~ 1954 (2004)
.+.+. +... .........++|+++|...++..-|++|.+||+.+ .+.+.++..|-.+
T Consensus 307 ~~~~~~~~~~l~~~~~v~~~--v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 307 TRFDAVFYENADPRSAVVAE--PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp GGHHHHHHSCCCGGGGEEEC--CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred cccccccccccCcccceEEE--cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence 86531 1111 22335678999999994444555699999999976 5667777666543
Q ss_pred e-----EEEEEcCCCCEEEEEEC---CCe----------EEEEECCCCe
Q psy8748 1955 V-----TSISLSPNGMALVTSSW---DQF----------VKVWQESNTI 1985 (2004)
Q Consensus 1955 V-----tsLaFSPDg~~LaSgS~---DGt----------IrIWdlstg~ 1985 (2004)
- .++.++|||++|+++.. |+. -.++|+++++
T Consensus 385 Gh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 385 GHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 2 12245799999999854 443 2889997765
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.54 E-value=7.8e-05 Score=85.56 Aligned_cols=248 Identities=10% Similarity=0.028 Sum_probs=153.2
Q ss_pred CEEEEEeCCCeEEEEECCCCce-----EEEeeCCCCceEEEEEecCCCEEE-EeecCCeEEEEEcCCCCCCCcceEEEEE
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNK-----TQVIPLRSAWVMSVAFAQSGNFVA-CGGMDNMCTVYDLNNRDSTGAAKVIREL 1778 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~-----l~ti~~Ht~~ItsLafSPdg~~La-SGS~DGtIrVWDl~t~~~~~~~k~i~sl 1778 (2004)
++|+.+.. +.|+.+++..... ...+......+.+++|+++++.++ +-..++.|..++.+... . ....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~----~--~~~~ 74 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE----P--TTII 74 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----C--EEEE
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC----c--EEEE
Confidence 44555543 4788888765432 112222234578999999765554 44557899999986532 1 1112
Q ss_pred ecCccceeeeEEeC-CCcEEE-eecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC---CCeEEEEEC
Q psy8748 1779 LGYEGFLSSCRFID-DTTLLT-GSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV---DKSCKLWDF 1853 (2004)
Q Consensus 1779 ~gh~~~Vssvafsd-d~~LlS-gS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~---DGsIrIWDl 1853 (2004)
.........+++.+ ++.++. ....+.|.+++.+..... .+..........++++|++..++.+.. .+.|..++.
T Consensus 75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~ 153 (267)
T 1npe_A 75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM 153 (267)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence 22224567777775 455554 445689999998754332 222222346789999997777666654 368888887
Q ss_pred CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CC
Q psy8748 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS-DD 1931 (2004)
Q Consensus 1854 rs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sD 1931 (2004)
............-.....+++++++..++.+. ..+.|.++|........... . ......++.. +..++++. .+
T Consensus 154 dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~--~-~~~P~gi~~d--~~~lyva~~~~ 228 (267)
T 1npe_A 154 DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE--G-LQYPFAVTSY--GKNLYYTDWKT 228 (267)
T ss_dssp TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE--C-CCSEEEEEEE--TTEEEEEETTT
T ss_pred CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec--C-CCCceEEEEe--CCEEEEEECCC
Confidence 64332212222334678999999877665554 46789999987544333322 1 1233556654 45555555 56
Q ss_pred CeEEEEECCCCeeeEEEccCC-CCeEEEEEcCCCC
Q psy8748 1932 NNVHVWDLLKTTHNGVLSGHE-NRVTSISLSPNGM 1965 (2004)
Q Consensus 1932 GsIrIWDL~tge~l~tL~gHs-~~VtsLaFSPDg~ 1965 (2004)
+.|..+|..+++.+..+.... ....++++.|++.
T Consensus 229 ~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 229 NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 899999999999888886433 3477888888765
No 243
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.49 E-value=5.7e-05 Score=97.79 Aligned_cols=281 Identities=13% Similarity=0.076 Sum_probs=174.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCce---------EEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceE
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWV---------MSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~I---------tsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
+..++.++.++.|.-+|..+|+.+..+....... ..++. .+..+++++.++.+..+|..+++.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~-- 143 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKK-- 143 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEE--
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeee--
Confidence 3445555554459999999999998876543210 12222 3567888888999999999876532211
Q ss_pred EEEEecCc--ccee-eeEEeCC----C-cEEEeec------CCeEEEEECCCCceeEEeecccc----------------
Q psy8748 1775 IRELLGYE--GFLS-SCRFIDD----T-TLLTGSG------DMKIVTWNLETGQRIHEVAQAHI---------------- 1824 (2004)
Q Consensus 1775 i~sl~gh~--~~Vs-svafsdd----~-~LlSgS~------DGtI~IWDl~tg~~i~~il~~h~---------------- 1824 (2004)
....+. ..+. .....++ . .+++++. +|.|+.+|..+|+.+........
T Consensus 144 --~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~ 221 (582)
T 1flg_A 144 --KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDV 221 (582)
T ss_dssp --ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCT
T ss_pred --cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccc
Confidence 111110 0111 1111122 1 5666553 78999999999987765422100
Q ss_pred ------------------------CCeEEEEECCCCCEEEEEEC--------------------C----CeEEEEECCCC
Q psy8748 1825 ------------------------GDVVSISLSPDGQYFVTGSV--------------------D----KSCKLWDFREK 1856 (2004)
Q Consensus 1825 ------------------------~~ItsLafSPdg~~LaSGS~--------------------D----GsIrIWDlrs~ 1856 (2004)
..-..++++|+...+++++. | +.|..+|.+++
T Consensus 222 g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG 301 (582)
T 1flg_A 222 KAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG 301 (582)
T ss_dssp TCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC
T ss_pred ccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCC
Confidence 00013566777788887763 2 58999999999
Q ss_pred eEEEEEec--CC--------CCeEEEEEe-CCCC---EEEEEECCCeEEEEEccCCceeEEEcCCCCC-----------C
Q psy8748 1857 KCVQTFFG--HE--------ADVNSVCFH-PSGL---AFATGSEDKTARLFDIRADQQIATYLPPNKN-----------S 1911 (2004)
Q Consensus 1857 k~I~tl~~--h~--------s~ItsIafS-Pdg~---~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~-----------s 1911 (2004)
+.+..+.. |. .++. +... .+|+ .++.++.+|.++++|..+|+.+..+...... .
T Consensus 302 ~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~ 380 (582)
T 1flg_A 302 EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGR 380 (582)
T ss_dssp CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCC
T ss_pred CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCC
Confidence 98887753 21 1111 2222 4664 6888999999999999999988766432200 0
Q ss_pred --------------------C------------eEEEEEcCCCCEEEEEe------------------------------
Q psy8748 1912 --------------------G------------FTSCAVSSSGRYIFCGS------------------------------ 1929 (2004)
Q Consensus 1912 --------------------~------------ItsLafSPdG~~LaSGS------------------------------ 1929 (2004)
. ...++++|+...+++..
T Consensus 381 p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~ 460 (582)
T 1flg_A 381 PVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRM 460 (582)
T ss_dssp EEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEES
T ss_pred EeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCC
Confidence 0 01346677655555432
Q ss_pred ---CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1930 ---DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1930 ---sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
.+|.|..||+.+++.+.....+. ++..-.....+.+++.++.||.++.||.++|+.+-..+.
T Consensus 461 ~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 461 YDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 25889999999999887765332 222212222466788899999999999999976555544
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.43 E-value=2e-05 Score=103.57 Aligned_cols=263 Identities=15% Similarity=0.142 Sum_probs=162.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCC----CceEE-EEEecCCCEEEEeec------CCeEEEEEcCCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS----AWVMS-VAFAQSGNFVACGGM------DNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht----~~Its-LafSPdg~~LaSGS~------DGtIrVWDl~t~~~~~~~ 1772 (2004)
+..++.++.||.|..+|..+|+.+..+.... ..+.+ ... .+..++++.. +|.|..+|..+++.....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4568888889999999999999998876531 11111 111 1345555543 589999999876532221
Q ss_pred eEEEEEe-------------------------cCccceeeeEEeC-CCcEEEeecCC-------------------eEEE
Q psy8748 1773 KVIRELL-------------------------GYEGFLSSCRFID-DTTLLTGSGDM-------------------KIVT 1807 (2004)
Q Consensus 1773 k~i~sl~-------------------------gh~~~Vssvafsd-d~~LlSgS~DG-------------------tI~I 1807 (2004)
....... +.........+.+ .+.++.++.++ .|..
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 1100000 0000111234443 45677777666 4999
Q ss_pred EECCCCceeEEeecc-cc-------CCeEEEEECCCCC---EEEEEECCCeEEEEECCCCeEEEEEecCC----------
Q psy8748 1808 WNLETGQRIHEVAQA-HI-------GDVVSISLSPDGQ---YFVTGSVDKSCKLWDFREKKCVQTFFGHE---------- 1866 (2004)
Q Consensus 1808 WDl~tg~~i~~il~~-h~-------~~ItsLafSPdg~---~LaSGS~DGsIrIWDlrs~k~I~tl~~h~---------- 1866 (2004)
+|.++|+.+...... |. .+.....+..+|+ .+++++.+|.++++|..+++.+.......
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~ 354 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence 999999988766433 21 2222223333565 68899999999999999999875432211
Q ss_pred --CCe------------------------EEEEEeCCCCEEEEEE-----------------------------------
Q psy8748 1867 --ADV------------------------NSVCFHPSGLAFATGS----------------------------------- 1885 (2004)
Q Consensus 1867 --s~I------------------------tsIafSPdg~~LaSgS----------------------------------- 1885 (2004)
.++ ..++++|+...+++..
T Consensus 355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~ 434 (668)
T 1kv9_A 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA 434 (668)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence 000 1267788766665421
Q ss_pred -CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCe-EEEEEcCC
Q psy8748 1886 -EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRV-TSISLSPN 1963 (2004)
Q Consensus 1886 -~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~V-tsLaFSPD 1963 (2004)
.+|.|..||..+++...+..... ......+...+.++++|+.||.++.||.++++.+..+....+.. .-+.+..+
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~ 511 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELA 511 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred CccceEEEEeCCCCcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEEC
Confidence 23789999999999987774322 22223444578899999999999999999999998886543211 22334456
Q ss_pred CC-EEEEEE
Q psy8748 1964 GM-ALVTSS 1971 (2004)
Q Consensus 1964 g~-~LaSgS 1971 (2004)
|+ +++.+.
T Consensus 512 G~~yva~~~ 520 (668)
T 1kv9_A 512 GRQYVAIMA 520 (668)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 66 444443
No 245
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=0.00017 Score=95.87 Aligned_cols=284 Identities=13% Similarity=0.041 Sum_probs=178.6
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee-------CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP-------LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~-------~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
..|.++...++|.+.+ |+.+ -+.+||..+++...... .....|.++...++|.+.+ |+..+-|.+++..+
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCC
Confidence 5689999888887554 4444 58999987765432211 1245699998887776554 55544588888765
Q ss_pred CCCCCcce----EEEEE----ecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEee--------ccccCCeEE
Q psy8748 1766 RDSTGAAK----VIREL----LGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVA--------QAHIGDVVS 1829 (2004)
Q Consensus 1766 ~~~~~~~k----~i~sl----~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il--------~~h~~~Its 1829 (2004)
........ .+... .-....|.++....++.+.+|+.++.|..|+..++....... .-....|.+
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 367 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSS 367 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEE
Confidence 42110000 00000 112345777777777889999988899999987655332111 012356899
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC
Q psy8748 1830 ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF---FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1830 LafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl---~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
+...++|+ +.+|+.++.|..||..++...... ......|.++...++|. +.+|+.++.+..+|..+++.. .+..
T Consensus 368 i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~ 444 (781)
T 3v9f_A 368 VCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIEL 444 (781)
T ss_dssp EEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEE-ECCS
T ss_pred EEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEE-Eecc
Confidence 99988776 667777777999998654322111 12345788998887776 455777777999998766543 2321
Q ss_pred -CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1907 -PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH-----ENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1907 -~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH-----s~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
......|.++...++|++.+ |+. +-|..||..+++........ ...|.++...++|.+.+ |+.++-|..|+
T Consensus 445 ~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~ 521 (781)
T 3v9f_A 445 EKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYT 521 (781)
T ss_dssp TTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEEC
T ss_pred CCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEe
Confidence 12335688898888876544 555 55899998776554433222 46799999999888555 44434477788
Q ss_pred CCCCe
Q psy8748 1981 ESNTI 1985 (2004)
Q Consensus 1981 lstg~ 1985 (2004)
..++.
T Consensus 522 ~~~~~ 526 (781)
T 3v9f_A 522 PDMQL 526 (781)
T ss_dssp TTCCE
T ss_pred CCCCe
Confidence 77653
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.37 E-value=8.7e-05 Score=87.71 Aligned_cols=238 Identities=10% Similarity=0.088 Sum_probs=147.0
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeC-C-------------------CCceEEEEEec-CCCEEE
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL-R-------------------SAWVMSVAFAQ-SGNFVA 1750 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~-H-------------------t~~ItsLafSP-dg~~La 1750 (2004)
-....+++|+++|++++++..++.|..||..+++... +.. . ...+.++++.+ +++++
T Consensus 18 ~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~- 95 (322)
T 2fp8_A 18 SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY- 95 (322)
T ss_dssp SSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-
T ss_pred cCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCcEE-
Confidence 3456789999999878888889999999987654432 221 0 12478999997 55544
Q ss_pred EeecCCeEEEEEcCCCCCCCcceEEEE-Eec-CccceeeeEEeC-CCcEEEeec------------------CCeEEEEE
Q psy8748 1751 CGGMDNMCTVYDLNNRDSTGAAKVIRE-LLG-YEGFLSSCRFID-DTTLLTGSG------------------DMKIVTWN 1809 (2004)
Q Consensus 1751 SGS~DGtIrVWDl~t~~~~~~~k~i~s-l~g-h~~~Vssvafsd-d~~LlSgS~------------------DGtI~IWD 1809 (2004)
++...+.|..++..++. ...... ..+ .......+.+.+ ++.++++.. +|.|..||
T Consensus 96 v~d~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGH----ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEETTTEEEEECTTCEE----CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEECCCCEEEEeCCCCE----EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 44444557778765321 111111 111 112345677766 666666543 37799999
Q ss_pred CCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCCCCEEEEEEC
Q psy8748 1810 LETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKK--CVQTFFGHEADVNSVCFHPSGLAFATGSE 1886 (2004)
Q Consensus 1810 l~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k--~I~tl~~h~s~ItsIafSPdg~~LaSgS~ 1886 (2004)
..+++... .. ........++++++++.++++. ..+.|..|++.... ....+....+ ...+++.++|++.++...
T Consensus 172 ~~~~~~~~-~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 172 PSTKETTL-LL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TTTTEEEE-EE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred CCCCEEEE-ec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence 87765432 11 1223456799999999777664 56889999987421 1112211223 788999999987666544
Q ss_pred ----------CCeEEEEEccCCceeEEEcCCCC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1887 ----------DKTARLFDIRADQQIATYLPPNK--NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1887 ----------DGtIrIWDLrtgk~i~t~~~~~~--~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
.+.|..+|.. ++.+..+..+.. ...++.+++ .+++++++...++.|..+++.
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 4678888874 666666643321 234566666 355555555567889999874
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.36 E-value=5.4e-05 Score=88.72 Aligned_cols=196 Identities=11% Similarity=0.007 Sum_probs=139.4
Q ss_pred ceeeeEEeCCCcEEEeec---CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEE
Q psy8748 1784 FLSSCRFIDDTTLLTGSG---DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKCV 1859 (2004)
Q Consensus 1784 ~Vssvafsdd~~LlSgS~---DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~I 1859 (2004)
....+.+.+++.++.++. ++.|.++|..+++.+..+..+.......++++ ++.++.+. .++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 357888887567666653 58999999999998877643332233456665 55565555 5789999999999998
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCC---CCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy8748 1860 QTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN---SGFTSCAVSSSGRYIFCGSDDNNVHV 1936 (2004)
Q Consensus 1860 ~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~---s~ItsLafSPdG~~LaSGSsDGsIrI 1936 (2004)
.++...... ...+++||+.++++..++.|.++|..+.+....+...... .....+.|. +|...+....++.|.+
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v 176 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR 176 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence 888543122 2345667877777777899999999998888777543221 235677777 6755555445789999
Q ss_pred EECCCCeeeEEEccC-------------CCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCC
Q psy8748 1937 WDLLKTTHNGVLSGH-------------ENRVTSISLSPNGMAL-VTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1937 WDL~tge~l~tL~gH-------------s~~VtsLaFSPDg~~L-aSgS~DGtIrIWdlstg 1984 (2004)
.|..+++.+..+... .....+|+|+|+++.+ +++...+.|.+.++...
T Consensus 177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 999999999888531 1356999999998755 55556788888887653
No 248
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00026 Score=94.18 Aligned_cols=282 Identities=13% Similarity=0.016 Sum_probs=179.9
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee--------------CCCCceEEEEEecCCCEEEEeecCCe
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP--------------LRSAWVMSVAFAQSGNFVACGGMDNM 1757 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~--------------~Ht~~ItsLafSPdg~~LaSGS~DGt 1757 (2004)
...|+++...++|. |..|+..+-|.++|..++....... .....|.++...++|... .|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCCe
Confidence 35699999888776 5556664568899987765432211 134579999998888744 5665666
Q ss_pred EEEEEcCCCCCCCcceEEEEE-------ecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEe--eccccCCeE
Q psy8748 1758 CTVYDLNNRDSTGAAKVIREL-------LGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV--AQAHIGDVV 1828 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl-------~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~i--l~~h~~~It 1828 (2004)
|..|+..... ....... .-....|.++....++.+.+|+.++.|..||..++...... .......|.
T Consensus 335 l~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~ 410 (781)
T 3v9f_A 335 INFISNAPPT----FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL 410 (781)
T ss_dssp EEEECSSCCS----CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred EEEeCCCCCc----ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence 8888876432 1111110 11234577777777788999998888999998765432110 012345689
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEc
Q psy8748 1829 SISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF---GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~---~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~ 1905 (2004)
++...++|+ |.+|+.++.+..+|..+++.. .+. .....|.++...++|. +..|+. +.+..||..+++......
T Consensus 411 ~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~ 486 (781)
T 3v9f_A 411 CSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYD 486 (781)
T ss_dssp EEEECTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEEC
T ss_pred EEEECCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEeccc
Confidence 999887776 556777778999998776543 332 1345788998888775 555665 569999988766543332
Q ss_pred CC---CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc---CCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1906 PP---NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG---HENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1906 ~~---~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g---Hs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
.. .....|.++..+++|++.+. +.++-+..||..+++....... ....|.++...++|.+.++. .+|.|..|
T Consensus 487 ~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~ 564 (781)
T 3v9f_A 487 TSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFP 564 (781)
T ss_dssp TTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEES
T ss_pred CcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEE
Confidence 11 11356889999998886554 4433477888766654332211 24578999999888865544 46655888
Q ss_pred ECCCCe
Q psy8748 1980 QESNTI 1985 (2004)
Q Consensus 1980 dlstg~ 1985 (2004)
+..++.
T Consensus 565 d~~~~~ 570 (781)
T 3v9f_A 565 SARNFD 570 (781)
T ss_dssp CTTTCC
T ss_pred CCCCCc
Confidence 887664
No 249
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.34 E-value=0.00063 Score=77.99 Aligned_cols=237 Identities=8% Similarity=-0.019 Sum_probs=145.1
Q ss_pred CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEE-eecCCeEEEEECCCCceeEEeecccc
Q psy8748 1747 NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLT-GSGDMKIVTWNLETGQRIHEVAQAHI 1824 (2004)
Q Consensus 1747 ~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlS-gS~DGtI~IWDl~tg~~i~~il~~h~ 1824 (2004)
.+|+.+.. +.|+.++++...... ......+.........+++.+ ++.++. ...++.|..++...+... .......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~-~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~ 78 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKK-TEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TIIRQDL 78 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCG-GGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEECTTC
T ss_pred cEEEEEcC-CeEEEEEecCccccc-ccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-EEEECCC
Confidence 44555543 478888887543211 000111111123566788875 455554 445789999999765543 3332333
Q ss_pred CCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEEccCCce
Q psy8748 1825 GDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE---DKTARLFDIRADQQ 1900 (2004)
Q Consensus 1825 ~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~---DGtIrIWDLrtgk~ 1900 (2004)
.....+++++++..++.+. ..+.|.+++...................++++|++..++.+.. .+.|..+++... .
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~ 157 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-N 157 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-C
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-C
Confidence 5678999999766666554 4678999998654322222222256789999997666655554 368888887643 3
Q ss_pred eEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q psy8748 1901 IATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSS-WDQFVKV 1978 (2004)
Q Consensus 1901 i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS-~DGtIrI 1978 (2004)
...+.. ........+++++++..|+.+.. .+.|.++|.........+.+ .....+++.. +..|+.+. ..+.|..
T Consensus 158 ~~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 158 RRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp CEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred cEEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 233321 12245788999998877766554 57999999875444333332 3345677764 44555554 5689999
Q ss_pred EECCCCeEEEEEE
Q psy8748 1979 WQESNTIVWKVLK 1991 (2004)
Q Consensus 1979 Wdlstg~l~k~Ik 1991 (2004)
++..+++..+.+.
T Consensus 234 ~d~~~g~~~~~i~ 246 (267)
T 1npe_A 234 MDLAISKEMDTFH 246 (267)
T ss_dssp EETTTTEEEEEEC
T ss_pred EeCCCCCceEEEc
Confidence 9999987666664
No 250
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.34 E-value=0.0001 Score=91.96 Aligned_cols=188 Identities=12% Similarity=0.156 Sum_probs=130.9
Q ss_pred EEEeecCCeEEEEECCCC----ceeEEee------ccccCCeEEEEECCCCCEEEEEECC------CeEEEEECCCCeEE
Q psy8748 1796 LLTGSGDMKIVTWNLETG----QRIHEVA------QAHIGDVVSISLSPDGQYFVTGSVD------KSCKLWDFREKKCV 1859 (2004)
Q Consensus 1796 LlSgS~DGtI~IWDl~tg----~~i~~il------~~h~~~ItsLafSPdg~~LaSGS~D------GsIrIWDlrs~k~I 1859 (2004)
++.+..++.|+++|..+. +....+. .........+.+.|+| .++++..+ |.|.++|..+.+.+
T Consensus 99 ~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~ 177 (462)
T 2ece_A 99 IVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPL 177 (462)
T ss_dssp EEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEE
T ss_pred EEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEE
Confidence 555677899999999755 3332220 1111245667889999 66665555 78999999999999
Q ss_pred EEEecCCC---CeEEEEEeCCCCEEEEEE-------------------CCCeEEEEEccCCceeEEEcCCCCCCCeEEEE
Q psy8748 1860 QTFFGHEA---DVNSVCFHPSGLAFATGS-------------------EDKTARLFDIRADQQIATYLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1860 ~tl~~h~s---~ItsIafSPdg~~LaSgS-------------------~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLa 1917 (2004)
.++..... --..+.|+|+++.+++.. .+.+|.+||+.+++...++...........+.
T Consensus 178 ~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~ 257 (462)
T 2ece_A 178 GKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELR 257 (462)
T ss_dssp EECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEE
T ss_pred EEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeE
Confidence 88863322 234588899999888874 36899999999988887775532223445555
Q ss_pred E--cCCCCEEEEEeC------CCeEEEEECCCCee--eEEE--ccC----------------CCCeEEEEEcCCCCEEEE
Q psy8748 1918 V--SSSGRYIFCGSD------DNNVHVWDLLKTTH--NGVL--SGH----------------ENRVTSISLSPNGMALVT 1969 (2004)
Q Consensus 1918 f--SPdG~~LaSGSs------DGsIrIWDL~tge~--l~tL--~gH----------------s~~VtsLaFSPDg~~LaS 1969 (2004)
| +|+|+++++++. +++|.+|....++. ...+ ... ......|.+++||++|++
T Consensus 258 f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYV 337 (462)
T 2ece_A 258 PLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYL 337 (462)
T ss_dssp ECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEE
T ss_pred eeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEE
Confidence 5 999999988874 56888776544431 1111 110 245789999999999988
Q ss_pred EEC-CCeEEEEECCCC
Q psy8748 1970 SSW-DQFVKVWQESNT 1984 (2004)
Q Consensus 1970 gS~-DGtIrIWdlstg 1984 (2004)
+.. .+.|.+||+.+.
T Consensus 338 Snrg~d~VavfdV~d~ 353 (462)
T 2ece_A 338 SLWGIGEVRQYDISNP 353 (462)
T ss_dssp EETTTTEEEEEECSST
T ss_pred EeCCCCEEEEEEecCC
Confidence 876 689999999643
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.34 E-value=4.9e-05 Score=89.87 Aligned_cols=238 Identities=9% Similarity=0.013 Sum_probs=151.3
Q ss_pred ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEe-----------------cCccceeeeEEeC-CCcEE
Q psy8748 1736 WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELL-----------------GYEGFLSSCRFID-DTTLL 1797 (2004)
Q Consensus 1736 ~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~-----------------gh~~~Vssvafsd-d~~Ll 1797 (2004)
...+++|+++++.++++..++.|..|+...+. ........ ........+++.+ ++.++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~ 95 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG----FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTC----EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCc----eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence 45678899999878888888999999876432 11111100 0112456777875 77788
Q ss_pred EeecCCeEEEEECCCCceeEEee---cc-ccCCeEEEEECC-CCCEEEEEEC-----------------CCeEEEEECCC
Q psy8748 1798 TGSGDMKIVTWNLETGQRIHEVA---QA-HIGDVVSISLSP-DGQYFVTGSV-----------------DKSCKLWDFRE 1855 (2004)
Q Consensus 1798 SgS~DGtI~IWDl~tg~~i~~il---~~-h~~~ItsLafSP-dg~~LaSGS~-----------------DGsIrIWDlrs 1855 (2004)
++...+.|..+|..++... .+. .+ .......+++.+ +|+..++-.. +|.|..||..+
T Consensus 96 v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 8877777889987765432 221 11 123468899999 8876555322 36799999877
Q ss_pred CeEEEEEecCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEEccCCc--eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC--
Q psy8748 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATG-SEDKTARLFDIRADQ--QIATYLPPNKNSGFTSCAVSSSGRYIFCGSD-- 1930 (2004)
Q Consensus 1856 ~k~I~tl~~h~s~ItsIafSPdg~~LaSg-S~DGtIrIWDLrtgk--~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-- 1930 (2004)
++..... ..-.....++++++++.++++ +.++.|.+|++.... ....+.. ... ...++++++|++.++...
T Consensus 175 ~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~~~ 250 (322)
T 2fp8_A 175 KETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSSSEEL 250 (322)
T ss_dssp TEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEEEEET
T ss_pred CEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEecCcc
Confidence 7643322 222345689999999876665 456899999987521 1122211 112 678899999997766544
Q ss_pred --------CCeEEEEECCCCeeeEEEccCC----CCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1931 --------DNNVHVWDLLKTTHNGVLSGHE----NRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1931 --------DGsIrIWDL~tge~l~tL~gHs----~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
.+.|..+|. .++.+..+.... ..++++++ .++.+.++....+.|..+++...
T Consensus 251 ~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred cccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 467888886 577776665432 34677776 45665666566788999988643
No 252
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.30 E-value=1.7e-05 Score=103.75 Aligned_cols=271 Identities=13% Similarity=0.078 Sum_probs=155.9
Q ss_pred EEEEeC-CCCEEEEEeCCC-----------eEEEEECCCCceE--EEeeC-CCCceEEEEEecCCCEEEEeec-CCeEEE
Q psy8748 1697 SVHYSG-DSRHCVSGSLDG-----------KLIIWDTWTGNKT--QVIPL-RSAWVMSVAFAQSGNFVACGGM-DNMCTV 1760 (2004)
Q Consensus 1697 sLaFSP-DG~~LASGS~DG-----------tIrVWDl~Tgk~l--~ti~~-Ht~~ItsLafSPdg~~LaSGS~-DGtIrV 1760 (2004)
+.++.+ +++.++.||.++ .+.+||..+++.. ..... +.....++++..+++.+++|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887643 5889999887533 22322 3334456788889999999984 458999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEee-cC-----CeEEEEECCCCceeEEee---ccccCCeEEE
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGS-GD-----MKIVTWNLETGQRIHEVA---QAHIGDVVSI 1830 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS-~D-----GtI~IWDl~tg~~i~~il---~~h~~~ItsL 1830 (2004)
||..+.. ............. .++... ++..++.|+ .+ ..+.+||..+++...... ......-...
T Consensus 270 yd~~t~~----W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~ 344 (656)
T 1k3i_A 270 YDSSSDS----WIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG 344 (656)
T ss_dssp EEGGGTE----EEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred ecCcCCc----eeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence 9987542 2222112211222 233444 666677777 34 569999998876432100 0000000001
Q ss_pred EECCCCCEEEEEECCC---------eEEEEECCCCeEEEEEecCC---------CCeEEEEEeC-CCCEEEEEECCC---
Q psy8748 1831 SLSPDGQYFVTGSVDK---------SCKLWDFREKKCVQTFFGHE---------ADVNSVCFHP-SGLAFATGSEDK--- 1888 (2004)
Q Consensus 1831 afSPdg~~LaSGS~DG---------sIrIWDlrs~k~I~tl~~h~---------s~ItsIafSP-dg~~LaSgS~DG--- 1888 (2004)
.+..++..++.|+.+| .+..||..+.........+. ..-.++.|.. +++++++|+.++
T Consensus 345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 1223455556665444 56788887765433322221 1234445543 677788887543
Q ss_pred --------eEEEEEccCCceeEEE-cCCCCCCCeEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCeeeEE-
Q psy8748 1889 --------TARLFDIRADQQIATY-LPPNKNSGFTSCAVSSSGRYIFCGSDD-----------NNVHVWDLLKTTHNGV- 1947 (2004)
Q Consensus 1889 --------tIrIWDLrtgk~i~t~-~~~~~~s~ItsLafSPdG~~LaSGSsD-----------GsIrIWDL~tge~l~t- 1947 (2004)
.|.+||..+....... ..........+++..++|+++++|+.+ ..+.+||..+.+-...
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence 6888888766544332 011111223455677899999999854 4689999876553321
Q ss_pred -EccCCCCeEEEEEcCCCCEEEEEEC
Q psy8748 1948 -LSGHENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1948 -L~gHs~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
............+.++|+.++.||.
T Consensus 505 ~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 505 PNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCccccccHhhcCCCcEEEecCCC
Confidence 1112222344556789999999985
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.30 E-value=0.00012 Score=94.46 Aligned_cols=261 Identities=14% Similarity=0.083 Sum_probs=158.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCC----ceEE-EEEecCCCEEEEeec------CCeEEEEEcCCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSA----WVMS-VAFAQSGNFVACGGM------DNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~----~Its-LafSPdg~~LaSGS~------DGtIrVWDl~t~~~~~~~ 1772 (2004)
+..++.++.|+.+..+|..+|+.+........ .+.+ .... +..+++++. +|.|..+|..+++.....
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 45678888899999999999999987754321 1211 1111 345555554 789999999876532211
Q ss_pred eEEEEE-ec------------------------------Cccce-eeeEEeC-CCcEEEeecC----------------C
Q psy8748 1773 KVIREL-LG------------------------------YEGFL-SSCRFID-DTTLLTGSGD----------------M 1803 (2004)
Q Consensus 1773 k~i~sl-~g------------------------------h~~~V-ssvafsd-d~~LlSgS~D----------------G 1803 (2004)
...... .. ....+ ..+.+.. .+.++.++.+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 110000 00 00000 1123332 3455555532 3
Q ss_pred eEEEEECCCCceeEEeecccc--------CCeEEEEECCCCC---EEEEEECCCeEEEEECCCCeEEEEEecCC------
Q psy8748 1804 KIVTWNLETGQRIHEVAQAHI--------GDVVSISLSPDGQ---YFVTGSVDKSCKLWDFREKKCVQTFFGHE------ 1866 (2004)
Q Consensus 1804 tI~IWDl~tg~~i~~il~~h~--------~~ItsLafSPdg~---~LaSGS~DGsIrIWDlrs~k~I~tl~~h~------ 1866 (2004)
.|..+|.++|+.+......+. ....-+....+|+ .++.++.+|.++++|..+++.+.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 699999999998766643221 1111122224664 57788899999999999999877654221
Q ss_pred -------CCe--------------------------EEEEEeCCCCEEEEEE----------------------------
Q psy8748 1867 -------ADV--------------------------NSVCFHPSGLAFATGS---------------------------- 1885 (2004)
Q Consensus 1867 -------s~I--------------------------tsIafSPdg~~LaSgS---------------------------- 1885 (2004)
.++ ..++++|+...+++.+
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 2357888777777654
Q ss_pred ---------CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCC-e
Q psy8748 1886 ---------EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955 (2004)
Q Consensus 1886 ---------~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~-V 1955 (2004)
.+|.|..||..+++...++..... +....+...+..+++++.||.|+.||.++++.+..+...... -
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~---~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 509 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG 509 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecCCCC---ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEe
Confidence 347899999999998887743221 122223335677888999999999999999999888643221 1
Q ss_pred EEEEEcCCCCEEEE
Q psy8748 1956 TSISLSPNGMALVT 1969 (2004)
Q Consensus 1956 tsLaFSPDg~~LaS 1969 (2004)
.-+.+..+|+.++.
T Consensus 510 ~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 510 SPMTYSFKGKQYIG 523 (571)
T ss_dssp CCEEEEETTEEEEE
T ss_pred eeEEEEECCEEEEE
Confidence 22334567764443
No 254
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.26 E-value=0.00022 Score=83.58 Aligned_cols=208 Identities=13% Similarity=0.080 Sum_probs=140.0
Q ss_pred ceEEEeeCCC-CceEEEEEecCCCEEEEeec--CCeEEEEEcCCCCCCCcceEEEEEe-cCccceeeeEEeCCCcEEEee
Q psy8748 1725 NKTQVIPLRS-AWVMSVAFAQSGNFVACGGM--DNMCTVYDLNNRDSTGAAKVIRELL-GYEGFLSSCRFIDDTTLLTGS 1800 (2004)
Q Consensus 1725 k~l~ti~~Ht-~~ItsLafSPdg~~LaSGS~--DGtIrVWDl~t~~~~~~~k~i~sl~-gh~~~Vssvafsdd~~LlSgS 1800 (2004)
+.+.+++... .....+.|++++..+++.+. ++.|.++|..+++ ...... +.......+.+.++...++.-
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~------v~~~i~l~~~~fgeGi~~~g~~lyv~t~ 83 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK------VENIHKMDDSYFGEGLTLLNEKLYQVVW 83 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC------EEEEEECCTTCCEEEEEEETTEEEEEET
T ss_pred eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC------EEEEEecCCCcceEEEEEeCCEEEEEEe
Confidence 4455554322 34689999998765555543 5799999998763 333332 222233345555544455555
Q ss_pred cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-----CCeEEEEEe
Q psy8748 1801 GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE-----ADVNSVCFH 1875 (2004)
Q Consensus 1801 ~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~-----s~ItsIafS 1875 (2004)
.++.+.++|..+.+.+..+..+ ...-.. +++||+.++++..++.|.++|..+.+.+..+.-.. ..++.+.|.
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g-~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ-MKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC-SSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred cCCEEEEEECCCCcEEEEEECC-CCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 6899999999999888776444 122233 44577777777778999999999988877775321 136688888
Q ss_pred CCCCEEEEEECCCeEEEEEccCCceeEEEcCCC-----------CCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCC
Q psy8748 1876 PSGLAFATGSEDKTARLFDIRADQQIATYLPPN-----------KNSGFTSCAVSSSGRYIFC-GSDDNNVHVWDLLKT 1942 (2004)
Q Consensus 1876 Pdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~-----------~~s~ItsLafSPdG~~LaS-GSsDGsIrIWDL~tg 1942 (2004)
+|..++....++.|.+.|..+++.+..+...+ .......++|+|+++.+++ +...+.+.+.++...
T Consensus 161 -dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 161 -NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp -TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred -CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 67544444457899999999999988885431 1135689999999876555 546788888887543
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.26 E-value=0.00013 Score=94.89 Aligned_cols=256 Identities=13% Similarity=0.099 Sum_probs=155.0
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEeeCCCC----ceEE-EEEecCCCEEEEee------cCCeEEEEEcCCCCCCCcceE
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQVIPLRSA----WVMS-VAFAQSGNFVACGG------MDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~----~Its-LafSPdg~~LaSGS------~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
+++.++.|+.+..+|..+|+.+........ .+.+ -... ++ .+++++ .+|.|+.+|..+++.......
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 378888899999999999999887654321 1211 1111 34 555554 378999999987653221111
Q ss_pred EEEEec-------------------------------Cccce-eeeEEe-CCCcEEEeecC----------------CeE
Q psy8748 1775 IRELLG-------------------------------YEGFL-SSCRFI-DDTTLLTGSGD----------------MKI 1805 (2004)
Q Consensus 1775 i~sl~g-------------------------------h~~~V-ssvafs-dd~~LlSgS~D----------------GtI 1805 (2004)
...... ....+ ....+. ..+.++.++.+ +.|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 000000 00000 012232 34556666654 489
Q ss_pred EEEECCCCceeEEeeccccC--------CeEEEEEC-CCC---CEEEEEECCCeEEEEECCCCeEEEEEecCC-------
Q psy8748 1806 VTWNLETGQRIHEVAQAHIG--------DVVSISLS-PDG---QYFVTGSVDKSCKLWDFREKKCVQTFFGHE------- 1866 (2004)
Q Consensus 1806 ~IWDl~tg~~i~~il~~h~~--------~ItsLafS-Pdg---~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~------- 1866 (2004)
..+|.++|+........+.. ...-+... .+| ..++.++.+|.++++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 99999999988766443321 11112222 467 467778899999999999999877654211
Q ss_pred ------CCe--------------------------EEEEEeCCCCEEEEEE-----------------------------
Q psy8748 1867 ------ADV--------------------------NSVCFHPSGLAFATGS----------------------------- 1885 (2004)
Q Consensus 1867 ------s~I--------------------------tsIafSPdg~~LaSgS----------------------------- 1885 (2004)
.++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 111 2356777665554431
Q ss_pred ----------CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCe
Q psy8748 1886 ----------EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRV 1955 (2004)
Q Consensus 1886 ----------~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~V 1955 (2004)
.+|.+..||+.+++.+.+..... ....-.+...+..+++|+.||.++.||.++|+.+..++...+.+
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~ 517 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAI 517 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCCC---CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcE
Confidence 34789999999999887774221 11111123357788889999999999999999998886433221
Q ss_pred -EEEEEcCCCCE
Q psy8748 1956 -TSISLSPNGMA 1966 (2004)
Q Consensus 1956 -tsLaFSPDg~~ 1966 (2004)
.-+.+..+|+.
T Consensus 518 ~~P~~y~~~G~q 529 (599)
T 1w6s_A 518 GYPMTYTHKGTQ 529 (599)
T ss_dssp SCCEEEEETTEE
T ss_pred eccEEEEeCCEE
Confidence 22445567764
No 256
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.22 E-value=0.0019 Score=77.12 Aligned_cols=273 Identities=11% Similarity=0.074 Sum_probs=155.0
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee----CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP----LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~----~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
...+.+|.|.+++..+++ +.+|.|. +....|+.-.... .....+.++.|.+ +..++ ++..|.|.. ..+.++
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 347999999877777774 5677653 3333343322222 1245688999986 44444 455664433 222222
Q ss_pred CCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCe
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGs 1847 (2004)
..............+..+.+.+++.+++++.+|.|.. ..+.|+.-..........+..+.+.+++.+++++. +|.
T Consensus 110 ---tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~ 184 (327)
T 2xbg_A 110 ---SWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGS 184 (327)
T ss_dssp ---SCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSS
T ss_pred ---CceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCc
Confidence 2222111111223345566655566666666675533 22334433344445566789999999888776664 454
Q ss_pred EEE-EEC--CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC--CCCCCeEEEEEcCCC
Q psy8748 1848 CKL-WDF--REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP--NKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1848 IrI-WDl--rs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~--~~~s~ItsLafSPdG 1922 (2004)
+.. +|- .+.+.+. ......+..+.+.+++..+ .++.+|.+++.+...++.-.....+ .....+..+.+.+++
T Consensus 185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~ 261 (327)
T 2xbg_A 185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN 261 (327)
T ss_dssp EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS
T ss_pred EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC
Confidence 444 442 2333332 2445678899999988755 4556888877643323332222212 122358889999888
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLS---GHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge~l~tL~---gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
..+++| .+|.| ++....++.-..+. .+...+.++.|.+++ .++.++.+|.|.-++
T Consensus 262 ~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 262 EVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp CEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred EEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 877766 46766 44554454444443 234568889887554 467777899776554
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.21 E-value=7e-05 Score=87.37 Aligned_cols=183 Identities=11% Similarity=0.063 Sum_probs=128.1
Q ss_pred ceeeeEEeCCCcEEEeecCC--eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEE
Q psy8748 1784 FLSSCRFIDDTTLLTGSGDM--KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1784 ~Vssvafsdd~~LlSgS~DG--tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~I~ 1860 (2004)
....+.|.++..+.+++.+| .|+.+|+.+++............-..+++ +++.++... .++.+.+||..+.+.+.
T Consensus 44 ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 34677887554455556655 89999999999887764332222233444 355666555 57899999999999999
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCC---CCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy8748 1861 TFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN---SGFTSCAVSSSGRYIFCGSDDNNVHVW 1937 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~---s~ItsLafSPdG~~LaSGSsDGsIrIW 1937 (2004)
++.... .-..+ ++++..++.+..++.|.++|..+.+....+...... ..+..+.|. +|+..+..-.++.|.+.
T Consensus 122 ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vI 197 (262)
T 3nol_A 122 SFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRI 197 (262)
T ss_dssp EEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEE
Confidence 886533 22333 456777777766888999999999988877543222 234456666 67655555468899999
Q ss_pred ECCCCeeeEEEccC------------CCCeEEEEEcCCCCEEEEEEC
Q psy8748 1938 DLLKTTHNGVLSGH------------ENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1938 DL~tge~l~tL~gH------------s~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
|..+++.+..+... ....++|+|+|+++.|+..|.
T Consensus 198 Dp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 198 DPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999887532 235699999999888877774
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.19 E-value=0.00016 Score=93.69 Aligned_cols=261 Identities=14% Similarity=0.149 Sum_probs=156.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCC----ceE-EEEEec---CCC-EEEEee------cCCeEEEEEcCCCCC
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSA----WVM-SVAFAQ---SGN-FVACGG------MDNMCTVYDLNNRDS 1768 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~----~It-sLafSP---dg~-~LaSGS------~DGtIrVWDl~t~~~ 1768 (2004)
+..++.++.|+.|..+|..+|+.+........ .+. .-.... +++ .+++++ .+|.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45677788899999999999999987754321 111 111111 122 566655 378999999887653
Q ss_pred CCcceEE----E-------EEe---cC--------------------cc-ceeeeEEe-CCCcEEEeec-----------
Q psy8748 1769 TGAAKVI----R-------ELL---GY--------------------EG-FLSSCRFI-DDTTLLTGSG----------- 1801 (2004)
Q Consensus 1769 ~~~~k~i----~-------sl~---gh--------------------~~-~Vssvafs-dd~~LlSgS~----------- 1801 (2004)
....... . ... +. .. .-...++. ..+.+++++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 2211100 0 000 00 00 00112333 2345555552
Q ss_pred ---------C----CeEEEEECCCCceeEEeeccccC--------CeEEEEEC-CCCC---EEEEEECCCeEEEEECCCC
Q psy8748 1802 ---------D----MKIVTWNLETGQRIHEVAQAHIG--------DVVSISLS-PDGQ---YFVTGSVDKSCKLWDFREK 1856 (2004)
Q Consensus 1802 ---------D----GtI~IWDl~tg~~i~~il~~h~~--------~ItsLafS-Pdg~---~LaSGS~DGsIrIWDlrs~ 1856 (2004)
| +.|..+|..+|+.+......+.. ...-+... .+|+ .++.++.+|.++++|.+++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 2 68999999999988766433211 11112221 4664 7888999999999999999
Q ss_pred eEEEEEecCC-------------CCe--------------------------------EEEEEeCCCCEEEEEE------
Q psy8748 1857 KCVQTFFGHE-------------ADV--------------------------------NSVCFHPSGLAFATGS------ 1885 (2004)
Q Consensus 1857 k~I~tl~~h~-------------s~I--------------------------------tsIafSPdg~~LaSgS------ 1885 (2004)
+.+..+.... .++ ..++++|+...+++..
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 9877654321 000 1345666555554432
Q ss_pred ---------------------------CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1886 ---------------------------EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1886 ---------------------------~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
.+|.|..||+.+++...+...... ...-.....+..+++|+.||.++.||
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP---LWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC---CCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC---CcccceEeCCCEEEEECCCCcEEEEE
Confidence 257899999999998877643221 11111222477888899999999999
Q ss_pred CCCCeeeEEEccCCCCe-EEEEEcCCCCEE
Q psy8748 1939 LLKTTHNGVLSGHENRV-TSISLSPNGMAL 1967 (2004)
Q Consensus 1939 L~tge~l~tL~gHs~~V-tsLaFSPDg~~L 1967 (2004)
.++|+.+..++...+.+ .-+.|..+|+..
T Consensus 514 ~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 514 AKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 99999999887543322 225566677643
No 259
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.18 E-value=0.00032 Score=82.59 Aligned_cols=235 Identities=12% Similarity=0.044 Sum_probs=141.8
Q ss_pred ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC--
Q psy8748 1725 NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD-- 1802 (2004)
Q Consensus 1725 k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D-- 1802 (2004)
+.+..+... ....+++|+++++.+++-..++.|..|+.+.. ... ..........+++.+++.++++...
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-------~~~-~~~~~~~p~gia~~~dG~l~vad~~~~ 93 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-------QQI-HATVEGKVSGLAFTSNGDLVATGWNAD 93 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-------EEE-EEECSSEEEEEEECTTSCEEEEEECTT
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-------eEE-EEeCCCCceeEEEcCCCcEEEEeccCC
Confidence 334444432 45788999999987777767888988887532 111 1122345777888866666666532
Q ss_pred -CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE-EEEEec---------CCCCeEE
Q psy8748 1803 -MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC-VQTFFG---------HEADVNS 1871 (2004)
Q Consensus 1803 -GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~-I~tl~~---------h~s~Its 1871 (2004)
..|..+|..+++...............++..+++..+++-..+|.|+.+|...+.. +..... .-...+.
T Consensus 94 ~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png 173 (306)
T 2p4o_A 94 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 173 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred cceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCC
Confidence 25777887777654222111222334555555554444433588999999876532 211111 1123455
Q ss_pred EEEeCCCCEEEEEE-CCCeEEEEEccC-Cce--eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-
Q psy8748 1872 VCFHPSGLAFATGS-EDKTARLFDIRA-DQQ--IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNG- 1946 (2004)
Q Consensus 1872 IafSPdg~~LaSgS-~DGtIrIWDLrt-gk~--i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~- 1946 (2004)
+ +++++.++++. ..+.|..||+.. ++. ...+... .....++++++|+++++....+.|.++|.. ++...
T Consensus 174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 174 L--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTII 247 (306)
T ss_dssp E--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEE
T ss_pred c--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEE
Confidence 5 78887665554 567899999874 321 1111101 224567899999887777678899999974 65532
Q ss_pred -EEccCCCCeEEEEEc---CCCCEEEEEECCC
Q psy8748 1947 -VLSGHENRVTSISLS---PNGMALVTSSWDQ 1974 (2004)
Q Consensus 1947 -tL~gHs~~VtsLaFS---PDg~~LaSgS~DG 1974 (2004)
.+.......++++|. +++..|+.++..+
T Consensus 248 ~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 248 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred eecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 233334678999998 8887777766543
No 260
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.15 E-value=0.00069 Score=79.68 Aligned_cols=229 Identities=13% Similarity=0.091 Sum_probs=139.1
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCC--eEEEEEcCCCCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDN--MCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG--tIrVWDl~t~~~~~ 1770 (2004)
.....++|+++|+++++-..++.|..||... +....+. ......++++.++|+++++....+ .|..++..++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~--- 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT--- 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC---
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe---
Confidence 4678999999999777776789999999764 4433333 235688999999999666554332 45556654432
Q ss_pred cceEEEEEecCccceeeeEEeCCCcEEEee-cCCeEEEEECCCCce-eEEee--------ccccCCeEEEEECCCCCEEE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDTTLLTGS-GDMKIVTWNLETGQR-IHEVA--------QAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~~LlSgS-~DGtI~IWDl~tg~~-i~~il--------~~h~~~ItsLafSPdg~~La 1840 (2004)
........ .......++...++.++++. .+|.|+.+|...+.. +.... .........+ +++++.++
T Consensus 107 -~~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly 182 (306)
T 2p4o_A 107 -VETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY 182 (306)
T ss_dssp -EEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred -EEEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence 12222211 11222333334455555444 588999999876532 11100 0111234455 77887776
Q ss_pred EEE-CCCeEEEEECCC-CeE--EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1841 TGS-VDKSCKLWDFRE-KKC--VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1841 SGS-~DGsIrIWDlrs-~k~--I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
++. ..+.|..||+.. +.. ...+.. ......++++++|+++++....+.|.++|.. ++..............+++
T Consensus 183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 183 VSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred EEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 665 467899999874 321 111211 1346778999999877776678899999975 5543221112222457899
Q ss_pred EEc---CCCCEEEEEeCCC
Q psy8748 1917 AVS---SSGRYIFCGSDDN 1932 (2004)
Q Consensus 1917 afS---PdG~~LaSGSsDG 1932 (2004)
+|. ++++.|++++..+
T Consensus 261 a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECCSTTTTTEEEEEECTT
T ss_pred EEecccCCCCEEEEECCCC
Confidence 998 8888888776544
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.10 E-value=0.00018 Score=83.96 Aligned_cols=182 Identities=9% Similarity=0.013 Sum_probs=129.0
Q ss_pred ceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q psy8748 1784 FLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF 1863 (2004)
Q Consensus 1784 ~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~ 1863 (2004)
....+.|.++..+++.+.+|.|+.+|+.+++.+... ......-..+++.. ++..+..-.++.+.+||..+.+.+.++.
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 346777777666777888899999999999988776 33222223455543 2344444468899999999999999887
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCC---CeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1864 GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNS---GFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1864 ~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s---~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
... .-..++ +++..++.+..++.|.++|..+.+...++....... .+..+.|. +|+..+....++.|.+.|..
T Consensus 134 ~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~ 209 (268)
T 3nok_A 134 YSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA 209 (268)
T ss_dssp CSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred CCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence 532 234444 567788887779999999999999888775433222 34566666 67655444467899999999
Q ss_pred CCeeeEEEccC-------------CCCeEEEEEcCCCCEEEEEE
Q psy8748 1941 KTTHNGVLSGH-------------ENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1941 tge~l~tL~gH-------------s~~VtsLaFSPDg~~LaSgS 1971 (2004)
+++.+..+... ....++|+|+|+++.|+..|
T Consensus 210 TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 210 TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99998887521 13579999999776666555
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.03 E-value=0.0005 Score=79.47 Aligned_cols=193 Identities=9% Similarity=0.025 Sum_probs=130.9
Q ss_pred eEEEEEecCc--cceeeeEEeCCCcEEEeecC--CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE-ECCCe
Q psy8748 1773 KVIRELLGYE--GFLSSCRFIDDTTLLTGSGD--MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG-SVDKS 1847 (2004)
Q Consensus 1773 k~i~sl~gh~--~~Vssvafsdd~~LlSgS~D--GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG-S~DGs 1847 (2004)
+.+..+ .|. .....+.|.++..+.+.+.+ ..|+.+|+.+++............-..+++. ++.++.. -.++.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence 444444 333 34557888775445555554 4899999999998876633322222334443 4445444 46889
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCC---CCeEEEEEcCCCCE
Q psy8748 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN---SGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1848 IrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~---s~ItsLafSPdG~~ 1924 (2004)
+.+||..+.+.+.++.... .-..++ +++..++++..+++|.++|..+.+...++....+. ..++-+.+. +|+.
T Consensus 87 v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 9999999999999887543 334444 56777777777899999999999888777543222 234555655 6665
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEccC-------------CCCeEEEEEcCCCCEEEEEEC
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVLSGH-------------ENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL~gH-------------s~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
.+....+..|.+.|..+++.+..+... ....++|+++|+++.|+..|.
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 555546789999999999999887521 135689999998877777664
No 263
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.02 E-value=0.00083 Score=78.40 Aligned_cols=195 Identities=12% Similarity=0.115 Sum_probs=131.1
Q ss_pred ceEEEeeC-CCCceEEEEEecCCCEEEEeecCC--eEEEEEcCCCCCCCcceEEEEEecCcc-ceeeeEEeCCCcEEEee
Q psy8748 1725 NKTQVIPL-RSAWVMSVAFAQSGNFVACGGMDN--MCTVYDLNNRDSTGAAKVIRELLGYEG-FLSSCRFIDDTTLLTGS 1800 (2004)
Q Consensus 1725 k~l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DG--tIrVWDl~t~~~~~~~k~i~sl~gh~~-~Vssvafsdd~~LlSgS 1800 (2004)
+.+.+++. .......+.|+ ++.++.+++.+| .|+++|+.+++ ......-... .-..+....+...++.-
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk------v~~~~~l~~~~FgeGit~~g~~ly~ltw 104 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK------TLQQIELGKRYFGEGISDWKDKIVGLTW 104 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC------EEEEEECCTTCCEEEEEEETTEEEEEES
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCc------EEEEEecCCccceeEEEEeCCEEEEEEe
Confidence 34455542 22446889998 677777777766 89999998764 3333322222 22335555544455555
Q ss_pred cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecC--C---CCeEEEEEe
Q psy8748 1801 GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH--E---ADVNSVCFH 1875 (2004)
Q Consensus 1801 ~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h--~---s~ItsIafS 1875 (2004)
.++.+.+||..+.+.+.++..+..+ ..++ ++++.++.+..++.|.++|..+.+.+..+.-. . ..++.+.|.
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~eG--~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDGEG--WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSSCC--CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred eCCEEEEEECccCcEEEEEECCCCc--eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 6899999999999988777443322 3344 46777777766788999999998888776532 2 234557776
Q ss_pred CCCCEEEEEECCCeEEEEEccCCceeEEEcCCC----------CCCCeEEEEEcCCCCEEEEEeCC
Q psy8748 1876 PSGLAFATGSEDKTARLFDIRADQQIATYLPPN----------KNSGFTSCAVSSSGRYIFCGSDD 1931 (2004)
Q Consensus 1876 Pdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~----------~~s~ItsLafSPdG~~LaSGSsD 1931 (2004)
+|..++..-.++.|.+.|.++++....+...+ .......++++|+++.|++.+..
T Consensus 181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 181 -DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp -TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred -CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 67555444468899999999999988885431 12356889999988877776653
No 264
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.98 E-value=0.00017 Score=92.56 Aligned_cols=183 Identities=9% Similarity=0.052 Sum_probs=131.9
Q ss_pred EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEE-C-CCCCEEEEEEC------------------CCeEEEEECCC
Q psy8748 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL-S-PDGQYFVTGSV------------------DKSCKLWDFRE 1855 (2004)
Q Consensus 1796 LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf-S-Pdg~~LaSGS~------------------DGsIrIWDlrs 1855 (2004)
++....++.|.+.|+.+.+....+.......+..+++ + |+++++++++. ++.+.++|..+
T Consensus 105 fVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t 184 (595)
T 1fwx_A 105 FMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK 184 (595)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTT
T ss_pred EEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCC
Confidence 3344456789999999998775442233456888998 5 89999999852 35799999999
Q ss_pred CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC--------------------------------------eEEEEEccC
Q psy8748 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK--------------------------------------TARLFDIRA 1897 (2004)
Q Consensus 1856 ~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG--------------------------------------tIrIWDLrt 1897 (2004)
.+....+.-.. ....++++|+|+++++.+.+. .|.+.|.++
T Consensus 185 ~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~ 263 (595)
T 1fwx_A 185 WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRK 263 (595)
T ss_dssp TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSG
T ss_pred CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcc
Confidence 98888776433 467788999999999988653 366667666
Q ss_pred --Cce-eEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe------------eeEEEccCCCCeEEEEEc
Q psy8748 1898 --DQQ-IATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTT------------HNGVLSGHENRVTSISLS 1961 (2004)
Q Consensus 1898 --gk~-i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge------------~l~tL~gHs~~VtsLaFS 1961 (2004)
++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ ....+. -......++|+
T Consensus 264 ~~~~~~~~~Ipv---g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~ 339 (595)
T 1fwx_A 264 EASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFD 339 (595)
T ss_dssp GGCCSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEEC
T ss_pred cCCceeEEEEec---CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEEC
Confidence 333 233311 12345789999999888776 47899999998653 223332 24568899999
Q ss_pred CCCCEEEEEECCCeEEEEECCC
Q psy8748 1962 PNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1962 PDg~~LaSgS~DGtIrIWdlst 1983 (2004)
++|...++.-.|++|.+|++++
T Consensus 340 ~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 340 GRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp TTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCeEEEEEecCCcEEEEEhhH
Confidence 9994445566799999999987
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.97 E-value=0.012 Score=69.98 Aligned_cols=237 Identities=8% Similarity=-0.037 Sum_probs=143.0
Q ss_pred EEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEE-EEeecCCeEEEEEcCCCCCCCcceEEEEEecCccce
Q psy8748 1707 CVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFV-ACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL 1785 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~L-aSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~V 1785 (2004)
|+.+. ...|+..|+.+++....+.. ...+.+++|++.++.+ ++-..++.|..++.+......... ......-...
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~--~~~~~~~~~p 79 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAP 79 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE--EEECSSCSCC
T ss_pred EEEEC-CCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE--EEEeCCCCCc
Confidence 44443 35689999888776655543 4457899999866544 455556889999886521000111 1122222344
Q ss_pred eeeEEe-CCCcE-EEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC--CeEEEEECCCCeEEEE
Q psy8748 1786 SSCRFI-DDTTL-LTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD--KSCKLWDFREKKCVQT 1861 (2004)
Q Consensus 1786 ssvafs-dd~~L-lSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D--GsIrIWDlrs~k~I~t 1861 (2004)
..+++. .++.+ ++-...+.|.++|....... .+..........++++|.+..++.+... +.|..+++.... ...
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~ 157 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYS 157 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceE-EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEE
Confidence 566665 34444 45566789999998754432 3333344567899999977766666543 688888875433 333
Q ss_pred E-ecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1862 F-FGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1862 l-~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
+ ...-.....+++++++..|+.+. ..+.|..+|+....................+++. .+..+++-...+.|..+|.
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 3 23345678999998776666554 4578999998743332222211222345677775 3555555556789999998
Q ss_pred CCCeeeEEEcc
Q psy8748 1940 LKTTHNGVLSG 1950 (2004)
Q Consensus 1940 ~tge~l~tL~g 1950 (2004)
.+++....+..
T Consensus 237 ~~g~~~~~i~~ 247 (316)
T 1ijq_A 237 LTGSDVNLLAE 247 (316)
T ss_dssp TTCCCCEEEEC
T ss_pred CCCcceEEEec
Confidence 77776666643
No 266
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.95 E-value=0.00034 Score=91.53 Aligned_cols=231 Identities=13% Similarity=0.071 Sum_probs=132.1
Q ss_pred eEEEEeCCCCEEEEEeC-CCeEEEEECCCCceEEEeeCCC-CceEEEEEecCCCEEEEee-cC-----CeEEEEEcCCCC
Q psy8748 1696 NSVHYSGDSRHCVSGSL-DGKLIIWDTWTGNKTQVIPLRS-AWVMSVAFAQSGNFVACGG-MD-----NMCTVYDLNNRD 1767 (2004)
Q Consensus 1696 tsLaFSPDG~~LASGS~-DGtIrVWDl~Tgk~l~ti~~Ht-~~ItsLafSPdg~~LaSGS-~D-----GtIrVWDl~t~~ 1767 (2004)
.++++..+++.++.||. ++.+.+||..+++-...-..+. ..-.+++..++++.++.|+ .+ ..+.+||..+..
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 45677889999999984 4689999988775443222221 1223556667899999998 34 468999987542
Q ss_pred CCCcceEEEEE--ec-CccceeeeEEeCCCcEEEeecC---------CeEEEEECCCCceeEEeeccc--------cCCe
Q psy8748 1768 STGAAKVIREL--LG-YEGFLSSCRFIDDTTLLTGSGD---------MKIVTWNLETGQRIHEVAQAH--------IGDV 1827 (2004)
Q Consensus 1768 ~~~~~k~i~sl--~g-h~~~Vssvafsdd~~LlSgS~D---------GtI~IWDl~tg~~i~~il~~h--------~~~I 1827 (2004)
....... .. ......++...++..++.|+.+ ..+..||..++.......... ...-
T Consensus 326 ----W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 326 ----WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp ----EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred ----ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence 1111000 00 0000001111233334455444 456788988776442221110 1123
Q ss_pred EEEEEC-CCCCEEEEEECCC-----------eEEEEECCCCeEEEEE--ecCCCC-eEEEEEeCCCCEEEEEECC-----
Q psy8748 1828 VSISLS-PDGQYFVTGSVDK-----------SCKLWDFREKKCVQTF--FGHEAD-VNSVCFHPSGLAFATGSED----- 1887 (2004)
Q Consensus 1828 tsLafS-Pdg~~LaSGS~DG-----------sIrIWDlrs~k~I~tl--~~h~s~-ItsIafSPdg~~LaSgS~D----- 1887 (2004)
.++.+. .+++.+++|+.++ .|.+||..+..-.... ..+... -.+.+..|+++.++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 444443 3677888887543 6888888776544332 112222 2355677899999999864
Q ss_pred ------CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1888 ------KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1888 ------GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
..+.+||..+++-...-..........+..+.++|+.++.|+.
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999987654322111222233445667799999999985
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.87 E-value=0.0029 Score=73.18 Aligned_cols=194 Identities=11% Similarity=0.048 Sum_probs=129.7
Q ss_pred ceEEEeeC-CCCceEEEEEecCCCEEEEeecCC--eEEEEEcCCCCCCCcceEEEEEecCcc-ceeeeEEeCCCcEEEee
Q psy8748 1725 NKTQVIPL-RSAWVMSVAFAQSGNFVACGGMDN--MCTVYDLNNRDSTGAAKVIRELLGYEG-FLSSCRFIDDTTLLTGS 1800 (2004)
Q Consensus 1725 k~l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DG--tIrVWDl~t~~~~~~~k~i~sl~gh~~-~Vssvafsdd~~LlSgS 1800 (2004)
+.+.+++. .......+.|+. +.++.+++.+| .|+++|+.+++ ......-... .-..+....+..+...-
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk------v~~~~~l~~~~fgeGi~~~~~~ly~ltw 82 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR------ILQRAEVPPPYFGAGIVAWRDRLIQLTW 82 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC------EEEEEECCTTCCEEEEEEETTEEEEEES
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCC------EEEEEeCCCCcceeEEEEeCCEEEEEEe
Confidence 34455532 235578999986 56666766654 89999998763 3333322222 22344555554555566
Q ss_pred cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-----CCeEEEEEe
Q psy8748 1801 GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE-----ADVNSVCFH 1875 (2004)
Q Consensus 1801 ~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~-----s~ItsIafS 1875 (2004)
.++.+.+||..+.+.+.++..+.. -..++ ++++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|.
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~--Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGE--GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV 158 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSC--CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred eCCEEEEEECCcCcEEEEEeCCCC--ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence 789999999999998877754332 24444 457777777778899999999988877775322 245566665
Q ss_pred CCCCEEEEEECCCeEEEEEccCCceeEEEcCC-----------CCCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1876 PSGLAFATGSEDKTARLFDIRADQQIATYLPP-----------NKNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1876 Pdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~-----------~~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
+|..++..-.+..|.+.|.++++.+..+... ......+.++++|+++.|++.+.
T Consensus 159 -~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 159 -NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp -TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred -CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6655544446789999999999998887432 12235688999998777766654
No 268
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.86 E-value=0.0014 Score=76.53 Aligned_cols=194 Identities=12% Similarity=0.038 Sum_probs=131.5
Q ss_pred ceEEEeeC-CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCC
Q psy8748 1725 NKTQVIPL-RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM 1803 (2004)
Q Consensus 1725 k~l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DG 1803 (2004)
+.+.+++. .......+.|+ ++.++++.+.+|.|+++|+.+++.. .........-..+....+...++.-.++
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~------~~~l~~~~FgeGit~~g~~Ly~ltw~~~ 116 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPV------WMERLGNIFAEGLASDGERLYQLTWTEG 116 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCS------EEEECTTCCEEEEEECSSCEEEEESSSC
T ss_pred EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE------eEECCCCcceeEEEEeCCEEEEEEccCC
Confidence 34445532 23446888987 4677788888899999999887532 2222222222345565555566666789
Q ss_pred eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-----CCeEEEEEeCCC
Q psy8748 1804 KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE-----ADVNSVCFHPSG 1878 (2004)
Q Consensus 1804 tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~-----s~ItsIafSPdg 1878 (2004)
.+.+||..+.+.+.++..... -..++ ++++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~~e--GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG 191 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYSGE--GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG 191 (268)
T ss_dssp EEEEEETTTTEEEEEEECSSC--CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEEEECCcCcEEEEEeCCCc--eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC
Confidence 999999999998877754322 23444 467888888778999999999998887775322 234667777 67
Q ss_pred CEEEEEECCCeEEEEEccCCceeEEEcCC-----------CCCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1879 LAFATGSEDKTARLFDIRADQQIATYLPP-----------NKNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1879 ~~LaSgS~DGtIrIWDLrtgk~i~t~~~~-----------~~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
..++....++.|.+.|.++++.+..+... ........++++|+++.|++.+.
T Consensus 192 ~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 192 VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 55544446889999999999998887432 12245688999997665555443
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.85 E-value=0.00093 Score=88.92 Aligned_cols=246 Identities=9% Similarity=-0.078 Sum_probs=129.9
Q ss_pred ceeEEEEe-CCCCEEEEEeC-C----CeEEEEECCCC-ceEE-EeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1694 KVNSVHYS-GDSRHCVSGSL-D----GKLIIWDTWTG-NKTQ-VIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1694 ~VtsLaFS-PDG~~LASGS~-D----GtIrVWDl~Tg-k~l~-ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
.+...+|| |||++||-+.. + .+|+++|+.+| +.+. .+. ....++.|+|||+.|+....+..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~-------- 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDET-------- 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTT--------
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCC--------
Confidence 67889999 99998885433 2 25999999998 6321 111 11346789999988877654420
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCcee-EEeec-cccCCeEEEEECCCCCEEEEEE
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRI-HEVAQ-AHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i-~~il~-~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
. ....|+.+++.++... ..+.. ........+.|+|||++|+..+
T Consensus 244 ~----------------------------------~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 244 L----------------------------------RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS 289 (751)
T ss_dssp C----------------------------------CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred C----------------------------------CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence 0 0013444444433211 01111 1223356789999999888766
Q ss_pred C---CCeEEEEECCCC--eE-EEEE-ecCCCCeEEEEEeCCCCEEEEEECC----CeEEEEEccCCceeEE-EcCCCCCC
Q psy8748 1844 V---DKSCKLWDFREK--KC-VQTF-FGHEADVNSVCFHPSGLAFATGSED----KTARLFDIRADQQIAT-YLPPNKNS 1911 (2004)
Q Consensus 1844 ~---DGsIrIWDlrs~--k~-I~tl-~~h~s~ItsIafSPdg~~LaSgS~D----GtIrIWDLrtgk~i~t-~~~~~~~s 1911 (2004)
. ...|+++|+.++ .. +..+ ........++.|+.++.+++....+ ..|..+|+.++..... +.......
T Consensus 290 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~ 369 (751)
T 2xe4_A 290 QSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDV 369 (751)
T ss_dssp ECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSE
T ss_pred cCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCc
Confidence 3 346888998865 22 1333 2334455666655444444444433 2577777764222122 22222222
Q ss_pred CeEEEEEcCCCCEEEEEeCCCe--EEEEEC-------CCCeeeEEEccC-CCCeEEEEE----cCCCC-EEEEEECC---
Q psy8748 1912 GFTSCAVSSSGRYIFCGSDDNN--VHVWDL-------LKTTHNGVLSGH-ENRVTSISL----SPNGM-ALVTSSWD--- 1973 (2004)
Q Consensus 1912 ~ItsLafSPdG~~LaSGSsDGs--IrIWDL-------~tge~l~tL~gH-s~~VtsLaF----SPDg~-~LaSgS~D--- 1973 (2004)
.+..+.+. .+.++++...+|. |+++|+ ..++....+... ...+..+.+ ++++. ++++.+..
T Consensus 370 ~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P 448 (751)
T 2xe4_A 370 FMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATP 448 (751)
T ss_dssp EEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEE
T ss_pred EEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCC
Confidence 34455554 3344556666775 556665 333313333211 122334433 33554 44444432
Q ss_pred CeEEEEECCCCe
Q psy8748 1974 QFVKVWQESNTI 1985 (2004)
Q Consensus 1974 GtIrIWdlstg~ 1985 (2004)
+.+..+++.+++
T Consensus 449 ~~~~~~d~~~~~ 460 (751)
T 2xe4_A 449 NTWFDVSPQDHS 460 (751)
T ss_dssp EEEEEECTTTCC
T ss_pred CEEEEEECCCCc
Confidence 467777877765
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.84 E-value=0.0097 Score=71.87 Aligned_cols=257 Identities=8% Similarity=-0.041 Sum_probs=153.5
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEE-EeecCCeEEEEEcCCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVA-CGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~La-SGS~DGtIrVWDl~t~~~~ 1769 (2004)
+.+..+|.+..++ .+|+.+. ...|+..++........... ...+..++|++.+..|+ +-...+.|..++.+...
T Consensus 32 ~~d~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-- 106 (349)
T 3v64_C 32 RPDRRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-- 106 (349)
T ss_dssp CTTSSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--
T ss_pred CCCCCcccccccC-ceeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCC--
Confidence 3445567776664 3444443 35688888766555444443 34578999997655554 44567889889886532
Q ss_pred CcceEEEEEecCccceeeeEEeC-CCc-EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC-C-
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFID-DTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV-D- 1845 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafsd-d~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~-D- 1845 (2004)
... ...........+++.. ++. +++-...+.|.+.+.+..... .+..........++++|.+..++.... .
T Consensus 107 --~~~--~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~l~~P~~iavdp~~g~ly~td~~~~ 181 (349)
T 3v64_C 107 --VEE--VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNT 181 (349)
T ss_dssp --CEE--EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECTTCSCEEEEEEETTTTEEEEEECSSS
T ss_pred --ceE--EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-EEEeCCCCCcceEEEecCcCeEEEeccCCC
Confidence 111 1111223345566652 344 455556788999998755433 333334456789999997666665543 3
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1846 KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1846 GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
+.|..+++............-...+.++++|++..|+.+. ..+.|..+|+.......... . .......+++ ..+..
T Consensus 182 ~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~-~-~~~~P~giav-~~~~l 258 (349)
T 3v64_C 182 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-Q-GLPHPFAITV-FEDSL 258 (349)
T ss_dssp CEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-S-SCSSEEEEEE-ETTEE
T ss_pred CEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe-C-CCCCceEEEE-ECCEE
Confidence 6788888764432222222334578999998666665554 46789999987543332221 1 1244567777 34555
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEE
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaF 1960 (2004)
+++-...+.|..++..+|+....+........++++
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred EEecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 555556788999997777766666543334444444
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.83 E-value=0.013 Score=72.15 Aligned_cols=249 Identities=8% Similarity=-0.058 Sum_probs=152.0
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEe-ecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACG-GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSG-S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
+|+.+. ...|+..++........+. ....+..++|++.+..|+.+ ...+.|..++++..... .............
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~--~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--SSYDTVISRDIQA 160 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------CCCEEEECSSCSC
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC--CcceEEEeCCCCC
Confidence 444443 4688888987765555444 44568899999866555444 45688888888642110 0111122223334
Q ss_pred eeeeEEeC--CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC--CCeEEEEECCCCeEEE
Q psy8748 1785 LSSCRFID--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV--DKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1785 Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~--DGsIrIWDlrs~k~I~ 1860 (2004)
...+++.. +..+++-...+.|.+.+++..... .+..........++++|.+..|+.... .+.|...++.......
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~-~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTCSEE-EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCCceE-EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence 55666653 334555556788999998765443 333334456789999997777766653 3689999886544333
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1861 TFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
.....-.....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+.|..+|.
T Consensus 240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEES
T ss_pred EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEc
Confidence 3333335788999998777766654 4678999998754433333222222345566663 3444555556788999998
Q ss_pred CCCeeeEEEccCCCCeEEEEE
Q psy8748 1940 LKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1940 ~tge~l~tL~gHs~~VtsLaF 1960 (2004)
.+|+....+........++.+
T Consensus 319 ~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 319 LTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp SSCCCCEEEECSCSCEEEEEE
T ss_pred CCCCceEEEecCCCCCceEEE
Confidence 888877777655555666654
No 272
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.80 E-value=0.027 Score=67.45 Aligned_cols=260 Identities=10% Similarity=0.153 Sum_probs=171.6
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.+..|.|.|+.++....+.+...+ +.-.+|..+.++.-. ...+.++|+++. ..++...- ...+.--.|.
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~Ad---sAIMnP~~~ViALra-g~~LQiFnletK------~klks~~~-~e~VvfWkWi 115 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMK------SKMKAHTM-TDDVTFWKWI 115 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECCCS---EEEECSSSSEEEEEE-TTEEEEEETTTT------EEEEEEEC-SSCEEEEEEC
T ss_pred CCCEEEEEECCCCCCccccccccc---eeeeCCCccEEEEec-CCeEEEechHHh------hhhcceec-CCccEEEEec
Confidence 344799999998766544332222 334588888777665 678999999864 23333332 3456666777
Q ss_pred CCCcEEEeecCCeEEEEECCCCceeEEeeccc----cCCeEEEEECCCCCEEEEEEC-------CCeEEEEECCCCeEEE
Q psy8748 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAH----IGDVVSISLSPDGQYFVTGSV-------DKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1792 dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h----~~~ItsLafSPdg~~LaSGS~-------DGsIrIWDlrs~k~I~ 1860 (2004)
+.+.+...+ +..|+.|++.......+++..| ...|..-..+++.++++..|- .|.+.+|..+.+. -+
T Consensus 116 s~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ 193 (365)
T 2xzh_A 116 SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQ 193 (365)
T ss_dssp SSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EE
T ss_pred CCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cc
Confidence 777665554 3579999998655555555444 346778888999998876552 3678999987654 45
Q ss_pred EEecCCCCeEEEEEeCC---CCEEEEEEC---CCeEEEEEccCC---c-----eeEE-EcC-CCCCCCeEEEEEcCCCCE
Q psy8748 1861 TFFGHEADVNSVCFHPS---GLAFATGSE---DKTARLFDIRAD---Q-----QIAT-YLP-PNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPd---g~~LaSgS~---DGtIrIWDLrtg---k-----~i~t-~~~-~~~~s~ItsLafSPdG~~ 1924 (2004)
.+.+|......+.+..+ ...++.+.. .+++++.++... . .... +.+ .....-..++..++.-..
T Consensus 194 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygv 273 (365)
T 2xzh_A 194 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 273 (365)
T ss_dssp EECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTE
T ss_pred eeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCE
Confidence 66677554433322211 123343333 268999998543 1 1111 111 122344568889998899
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
++.-+.-|.|++||+.++.++..-+-....|..-+-+....-++.....|.|.--.+++.
T Consensus 274 iyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 274 VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 999999999999999999999888777778877776666666777778888877766654
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.76 E-value=0.018 Score=70.39 Aligned_cols=255 Identities=9% Similarity=-0.036 Sum_probs=154.7
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEE-EEeecCCeEEEEEcCCCCCCCc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFV-ACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~L-aSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
+.-+|.+..+ ..+|+.+. ...|+.+++..+........ ...+..++|++.+..| ++-...+.|..++.+...
T Consensus 77 d~~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~---- 149 (386)
T 3v65_B 77 DRRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---- 149 (386)
T ss_dssp TSSCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC----
T ss_pred CCCeECCccc-cceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC----
Confidence 3445666555 34444443 35788888876655544443 3457899999765544 454567889889886532
Q ss_pred ceEEEEEecCccceeeeEEeC-CCc-EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC-C-Ce
Q psy8748 1772 AKVIRELLGYEGFLSSCRFID-DTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV-D-KS 1847 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsd-d~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~-D-Gs 1847 (2004)
..............+++.. ++. +++-...+.|.+.+++..... .+..........++++|.+..++.+.. . +.
T Consensus 150 --~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~P~giavdp~~g~ly~td~~~~~~ 226 (386)
T 3v65_B 150 --VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR 226 (386)
T ss_dssp --EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred --cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE-EeecCCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence 1111122222344556552 334 455556778888888754433 333334456789999997776666553 3 67
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEE
Q psy8748 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATG-SEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIF 1926 (2004)
Q Consensus 1848 IrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSg-S~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~La 1926 (2004)
|..++.............-...+.++++|++..|+.+ +..+.|..+|+......... ... ......+++ ..+..++
T Consensus 227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-~~~-~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI-SQG-LPHPFAITV-FEDSLYW 303 (386)
T ss_dssp EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE-CSS-CSSEEEEEE-ETTEEEE
T ss_pred EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE-ECC-CCCceEEEE-ECCEEEE
Confidence 8888876543333333334457899999866665555 45678999998744333222 212 244567777 3455555
Q ss_pred EEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEE
Q psy8748 1927 CGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1927 SGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaF 1960 (2004)
+-...+.|..+|..+++....+........++++
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 6566788999997778777776544444555555
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.74 E-value=0.0063 Score=70.88 Aligned_cols=203 Identities=11% Similarity=0.148 Sum_probs=133.3
Q ss_pred EEecCccceeeeEEeCC-CcE-EEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECC
Q psy8748 1777 ELLGYEGFLSSCRFIDD-TTL-LTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR 1854 (2004)
Q Consensus 1777 sl~gh~~~Vssvafsdd-~~L-lSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlr 1854 (2004)
.+.+-...+..+++.++ +.+ ++...++.|...|.. ++....+..........+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 45566677999999853 444 457778999999998 777766644444678899999888766665567889999876
Q ss_pred CCeE---EEEEe------cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC---CceeEEEc-----CCCCCCCeEEEE
Q psy8748 1855 EKKC---VQTFF------GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA---DQQIATYL-----PPNKNSGFTSCA 1917 (2004)
Q Consensus 1855 s~k~---I~tl~------~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt---gk~i~t~~-----~~~~~s~ItsLa 1917 (2004)
.... +.... ..+....+++|+|.++.|+++...+...+|.++. ...+.... .......+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5432 22221 1234568999999998888877666556665541 11112110 111234578899
Q ss_pred EcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEccCC---------CCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1918 VSSS-GRYIFCGSDDNNVHVWDLLKTTHNGVLSGHE---------NRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1918 fSPd-G~~LaSGSsDGsIrIWDL~tge~l~tL~gHs---------~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
++|. |++++.......+.++|. +|+.+..+.-.. ..-.+|+|.++|+. +..++.+.++.|.-.
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC-
T ss_pred EcCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEEec
Confidence 9995 455566666788999996 466665553221 25689999999984 444777766666543
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.72 E-value=0.02 Score=69.10 Aligned_cols=232 Identities=8% Similarity=-0.026 Sum_probs=140.0
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEE-eecCCeEEEEECCCCceeEEeeccccC
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLT-GSGDMKIVTWNLETGQRIHEVAQAHIG 1825 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlS-gS~DGtI~IWDl~tg~~i~~il~~h~~ 1825 (2004)
+|+.+. .+.|+..+++... .............++|. .++.++. -...+.|..+++..+... .+......
T Consensus 46 ~ll~~~-~~~I~~i~~~g~~-------~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~~~~~~ 116 (349)
T 3v64_C 46 VLLFAN-RIDIRQVLPHRSE-------YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVVSTGLE 116 (349)
T ss_dssp EEEEEC-BSCEEEECTTSCC-------EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCS
T ss_pred eeEeec-ccceEEEeCCCCe-------eEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCce-EEEeCCCC
Confidence 444333 3447776665321 12222233446778887 4455544 446788999998876543 23223334
Q ss_pred CeEEEEECCCCCEEEEE-ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CC-CeEEEEEccCCceeE
Q psy8748 1826 DVVSISLSPDGQYFVTG-SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS-ED-KTARLFDIRADQQIA 1902 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSG-S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS-~D-GtIrIWDLrtgk~i~ 1902 (2004)
....+++++.+..|+.+ ...+.|.+.++........+...-.....++++|.+..++... .+ +.|..+++... ...
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~ 195 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRR 195 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcE
Confidence 56789998865555444 4567899999875543333333445678999999655555443 44 78988887643 333
Q ss_pred EEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1903 TYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
.+. .........+++++++..|+.+.. .+.|..+|+........+........++++. .+...++-...+.|..++.
T Consensus 196 ~~~-~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~ 273 (349)
T 3v64_C 196 IIA-DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANK 273 (349)
T ss_dssp ESC-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EEE-ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEc
Confidence 332 222345689999987777766654 6789999986543333344445567888883 4455555556788888886
Q ss_pred CCCeEEEEEE
Q psy8748 1982 SNTIVWKVLK 1991 (2004)
Q Consensus 1982 stg~l~k~Ik 1991 (2004)
.+|+..+.+.
T Consensus 274 ~~G~~~~~i~ 283 (349)
T 3v64_C 274 FTGKNQEIIR 283 (349)
T ss_dssp TTCCSCEEEE
T ss_pred cCCCccEEec
Confidence 5554444443
No 276
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.67 E-value=0.067 Score=66.30 Aligned_cols=260 Identities=10% Similarity=0.138 Sum_probs=173.4
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.+..|.|.|+.++......+...+ +.-.+|..+.++.-. ...+.++|++.. ...+...-. ..|.--.|.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~Ad---sAIMnP~~~iiALra-g~~lQiFnle~K------~klks~~~~-e~VvfWkWi 114 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMK------SKMKAHTMT-DDVTFWKWI 114 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCCS---EEEECSSSSCEEEEE-TTEEEEEETTTT------EEEEEEECS-SCCCEEEEE
T ss_pred CCCeEEEEECCCCCcceecccccc---eeeeCCCCcEEEEec-CCeEEEEchHHh------hhhcceecC-CCceEEEec
Confidence 345799999988766544332222 345678777776654 688999999864 233333333 345556666
Q ss_pred CCCcEEEeecCCeEEEEECCCCceeEEeeccc----cCCeEEEEECCCCCEEEEEEC-------CCeEEEEECCCCeEEE
Q psy8748 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAH----IGDVVSISLSPDGQYFVTGSV-------DKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1792 dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h----~~~ItsLafSPdg~~LaSGS~-------DGsIrIWDlrs~k~I~ 1860 (2004)
+.+.+...+ +..|+.|++.......+++..| ...|..-..+++.++++..|- .|.+.+|..+.+. -+
T Consensus 115 s~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ 192 (494)
T 1bpo_A 115 SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQ 192 (494)
T ss_dssp ETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EE
T ss_pred CCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cc
Confidence 666655554 4579999998655555555444 346788888999998876542 3678999987554 45
Q ss_pred EEecCCCCeEEEEEeCCC---CEEEEEEC---CCeEEEEEccCC--------ceeEEE--cCCCCCCCeEEEEEcCCCCE
Q psy8748 1861 TFFGHEADVNSVCFHPSG---LAFATGSE---DKTARLFDIRAD--------QQIATY--LPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg---~~LaSgS~---DGtIrIWDLrtg--------k~i~t~--~~~~~~s~ItsLafSPdG~~ 1924 (2004)
.+.+|......+....+. ..++.+.. .++++|.++... +..... .......--.++.+++.-..
T Consensus 193 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygv 272 (494)
T 1bpo_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (494)
T ss_dssp EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTE
T ss_pred hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCE
Confidence 667776555444332211 23444444 378999998543 111111 11122344568899999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
++.-+.-|.|++||+.++.++..-+-....|..-+-+....-++.....|.|.--.+++.
T Consensus 273 iyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 273 VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 999999999999999999999888777778877777776667777788888877766654
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.66 E-value=0.05 Score=64.52 Aligned_cols=232 Identities=7% Similarity=-0.027 Sum_probs=139.4
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEE-EeecCCeEEEEECCC---CceeEEeecc
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLL-TGSGDMKIVTWNLET---GQRIHEVAQA 1822 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~Ll-SgS~DGtI~IWDl~t---g~~i~~il~~ 1822 (2004)
+|+.+.. +.|+..+++... ... ..........+.|.. ++.++ +-..++.|..+++.. +.....+...
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~------~~~-~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSE------YTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp EEEEECB-SSEEEEETTSCC------CEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred EEEEECC-CeEEEEECCCcc------eEe-hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC
Confidence 3444443 458888887542 111 122334567788874 44444 445568999999876 1222223322
Q ss_pred ccCCeEEEEECCCCCEEEEE-ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC--CeEEEEEccCCc
Q psy8748 1823 HIGDVVSISLSPDGQYFVTG-SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED--KTARLFDIRADQ 1899 (2004)
Q Consensus 1823 h~~~ItsLafSPdg~~LaSG-S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D--GtIrIWDLrtgk 1899 (2004)
.......+++++.+..++.+ ...+.|.++|.........+.........++++|.+..++.+..+ +.|..+++. +.
T Consensus 75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~ 153 (316)
T 1ijq_A 75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GV 153 (316)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SC
T ss_pred CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CC
Confidence 33456789998755555544 567899999987554333333344577899999966665555443 688888876 33
Q ss_pred eeEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEE-c--cCCCCeEEEEEcCCCCEEEEEECCCe
Q psy8748 1900 QIATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGVL-S--GHENRVTSISLSPNGMALVTSSWDQF 1975 (2004)
Q Consensus 1900 ~i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~tL-~--gHs~~VtsLaFSPDg~~LaSgS~DGt 1975 (2004)
....+.. ........+++++++..|+.++ ..+.|..+|+... ....+ . ..-....++++. .+.++++-...+.
T Consensus 154 ~~~~~~~-~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~ 230 (316)
T 1ijq_A 154 DIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 230 (316)
T ss_dssp CEEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred CeEEEEE-CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCe
Confidence 3333322 1234578999999877776665 4578999998643 23333 2 123456788885 3555555556788
Q ss_pred EEEEECCCCeEEEEEE
Q psy8748 1976 VKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1976 IrIWdlstg~l~k~Ik 1991 (2004)
|..++..+++..+.+.
T Consensus 231 V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 231 IFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTCCCCEEEE
T ss_pred EEEEeCCCCcceEEEe
Confidence 9999987665444443
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.64 E-value=0.021 Score=71.23 Aligned_cols=239 Identities=13% Similarity=0.059 Sum_probs=140.6
Q ss_pred cceeEEEEeCC--CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC---C-eEEEEEcCCC
Q psy8748 1693 NKVNSVHYSGD--SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD---N-MCTVYDLNNR 1766 (2004)
Q Consensus 1693 ~~VtsLaFSPD--G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D---G-tIrVWDl~t~ 1766 (2004)
.....++|+|+ +..|+.+...+.|+.+|..++...... .......+++|+++|+++++.... . .+...+....
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 34678999985 445555544489999998877665543 344568999999999944443311 1 1333332211
Q ss_pred CCCCcceEEEEEecCccceeeeEEeC-CCcEEEee-cCCeEEEEECCCCceeEEeec-cccCCeEEEEECCCCCEEEEEE
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGS-GDMKIVTWNLETGQRIHEVAQ-AHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSgS-~DGtI~IWDl~tg~~i~~il~-~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
........ .......+++.+ ++.++++. .++.|+.+|..++.....+.. +....-..++|+|++++|+++.
T Consensus 218 -----~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 218 -----FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp -----TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred -----eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 11001111 123345566665 56666554 568899999987765323321 2222345799999999666665
Q ss_pred -CCCeEEEEECC--CCeE--EEEEecC---------------CCCeEEEEE---------eCCCCEEEEEECCCeEEEEE
Q psy8748 1844 -VDKSCKLWDFR--EKKC--VQTFFGH---------------EADVNSVCF---------HPSGLAFATGSEDKTARLFD 1894 (2004)
Q Consensus 1844 -~DGsIrIWDlr--s~k~--I~tl~~h---------------~s~ItsIaf---------SPdg~~LaSgS~DGtIrIWD 1894 (2004)
..+.|+.++.. ++.. ...+.+. -.....+++ .++|.++++-...+.|+.++
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 45789998865 2221 1122111 123567899 67777676666778899998
Q ss_pred ccCCceeEEEcCCCC----------------CCCeEEEEEc-CCCCEEEEEeCCCeEEEEECC
Q psy8748 1895 IRADQQIATYLPPNK----------------NSGFTSCAVS-SSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1895 Lrtgk~i~t~~~~~~----------------~s~ItsLafS-PdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
. ++.. .++..... -.....++++ ++|.++++=..++.|+.++++
T Consensus 372 ~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 372 P-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp T-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred C-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 5 4533 33321110 1236788999 566555555556788887753
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=0.013 Score=72.80 Aligned_cols=240 Identities=9% Similarity=0.023 Sum_probs=139.2
Q ss_pred cceeEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC-C----eEEEEEcCCC
Q psy8748 1693 NKVNSVHYSG-DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD-N----MCTVYDLNNR 1766 (2004)
Q Consensus 1693 ~~VtsLaFSP-DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D-G----tIrVWDl~t~ 1766 (2004)
.....++|+| ++..|+.+...+.|+.+|..++....... .......++|+++++.|+++... + .+.+++.. +
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 3567899998 46666666655889999987765544333 45568899999999966666542 1 23334432 2
Q ss_pred CCCCcceEEEEEecCccceeeeEEeC-CCcEEEe-ecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTG-SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS- 1843 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSg-S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS- 1843 (2004)
.. .....+. .......+++.+ ++.++++ ..++.|..++...+................++|+|+|++++++.
T Consensus 215 ~~----~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 215 GF----KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp TS----CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred ce----eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 11 1011111 123345666766 5565554 46789999999876542222222234577899999999666554
Q ss_pred CCCeEEEEECCC--CeE--EEEEecC---------------CCCeE-EEEEe--------CCCCEEEEEECCCeEEEEEc
Q psy8748 1844 VDKSCKLWDFRE--KKC--VQTFFGH---------------EADVN-SVCFH--------PSGLAFATGSEDKTARLFDI 1895 (2004)
Q Consensus 1844 ~DGsIrIWDlrs--~k~--I~tl~~h---------------~s~It-sIafS--------Pdg~~LaSgS~DGtIrIWDL 1895 (2004)
..+.|..++... +.. ...+.+. -.... .++.. ++|.++++-...+.|+.++.
T Consensus 290 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~ 369 (430)
T 3tc9_A 290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP 369 (430)
T ss_dssp TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT
T ss_pred CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC
Confidence 567899987653 221 1222111 01122 45553 34555555556678888883
Q ss_pred cCCceeEEEcC-----CC----------CCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q psy8748 1896 RADQQIATYLP-----PN----------KNSGFTSCAVSSS-GRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1896 rtgk~i~t~~~-----~~----------~~s~ItsLafSPd-G~~LaSGSsDGsIrIWDL~ 1940 (2004)
++........ .+ .-.....++++++ |.++++-..++.|+.++.+
T Consensus 370 -~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 370 -QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 4543333211 00 0124678999995 5555554456788887753
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.62 E-value=0.018 Score=70.40 Aligned_cols=232 Identities=8% Similarity=-0.019 Sum_probs=141.3
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEE-EeecCCeEEEEECCCCceeEEeeccccC
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIG 1825 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~Ll-SgS~DGtI~IWDl~tg~~i~~il~~h~~ 1825 (2004)
+|+.+. ...|+.+++.... . ..+.........++|. .++.++ +-...+.|..++...+... .+......
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~----~---~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~~~~~~ 159 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSE----Y---TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVVSTGLE 159 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCC----C---EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-EEECSSCS
T ss_pred eeEeec-CccceeeccCCCc----E---EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-EEEeCCCC
Confidence 444443 3457777775432 1 1222233456778887 345544 4456788999998866543 33233334
Q ss_pred CeEEEEECCCCCEEEEE-ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CC-CeEEEEEccCCceeE
Q psy8748 1826 DVVSISLSPDGQYFVTG-SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS-ED-KTARLFDIRADQQIA 1902 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSG-S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS-~D-GtIrIWDLrtgk~i~ 1902 (2004)
....+++++.+..|+.. ...+.|.++++........+...-.....+++.|.+..++.+. .+ +.|..+++......
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~- 238 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR- 238 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-
Confidence 55778898765555544 4567899888865443333333345678999998766655544 34 67888888644333
Q ss_pred EEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1903 TYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
.+.. ........++++|++..|+.+. ..+.|..+|+........+........++++ ..+.++++-...+.|..++.
T Consensus 239 ~~~~-~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 239 IIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp EEEC-SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEET
T ss_pred EEEE-CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEEC
Confidence 3321 2234568899998777666655 4678999998644433334444556788888 34455556566788999986
Q ss_pred CCCeEEEEEE
Q psy8748 1982 SNTIVWKVLK 1991 (2004)
Q Consensus 1982 stg~l~k~Ik 1991 (2004)
.+|+..+.+.
T Consensus 317 ~~G~~~~~i~ 326 (386)
T 3v65_B 317 FTGKNQEIIR 326 (386)
T ss_dssp TTCCSCEEEE
T ss_pred CCCcceEEEc
Confidence 5555444444
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.60 E-value=0.027 Score=67.26 Aligned_cols=229 Identities=9% Similarity=0.030 Sum_probs=139.0
Q ss_pred CCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCc-EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEE
Q psy8748 1755 DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832 (2004)
Q Consensus 1755 DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf 1832 (2004)
...|+.++++.... ..... . ........+.|.. ++. +++-...+.|..++...+................+++
T Consensus 12 ~~~I~~i~l~~~~~--~~~~~--~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glav 86 (318)
T 3sov_A 12 RRDLRLVDATNGKE--NATIV--V-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 86 (318)
T ss_dssp EEEEEEEETTCTTS--CCEEE--E-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEE
T ss_pred cCeEEEEECCCCce--EEEEE--e-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEE
Confidence 46688888875421 11111 1 1122455677763 344 4455567889999987664322222233345678999
Q ss_pred CCCCCEEE-EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC--CCeEEEEEccCCceeEEEcCCCC
Q psy8748 1833 SPDGQYFV-TGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE--DKTARLFDIRADQQIATYLPPNK 1909 (2004)
Q Consensus 1833 SPdg~~La-SGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~--DGtIrIWDLrtgk~i~t~~~~~~ 1909 (2004)
.+.+..|+ +-...+.|.+++...................+++.|.+..++.+.. .+.|..+++... ....+.. ..
T Consensus 87 d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~-~~ 164 (318)
T 3sov_A 87 DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIIN-SE 164 (318)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEEC-SS
T ss_pred EcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEE-CC
Confidence 87555454 4445678999998754433333344456789999997666665552 578888887643 3333321 12
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWK 1988 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k 1988 (2004)
......+++++++..|+.++ ..+.|..+|+..........+......++++.. +.++++-...+.|..++..+|+..+
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceE
Confidence 24568999999777776665 467899999864333333333455677888853 3445555567889999987765545
Q ss_pred EEE
Q psy8748 1989 VLK 1991 (2004)
Q Consensus 1989 ~Ik 1991 (2004)
.+.
T Consensus 244 ~i~ 246 (318)
T 3sov_A 244 EIH 246 (318)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.54 E-value=0.04 Score=65.82 Aligned_cols=238 Identities=9% Similarity=-0.025 Sum_probs=142.3
Q ss_pred CCeEEEEECCCCc--eEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeE
Q psy8748 1713 DGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCR 1789 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssva 1789 (2004)
...|+.+++.... ....+. ....+.+++|++.+. .+++-...+.|..++.+.... ..... ...-.....++
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~--~~~~~---~~~l~~p~gla 85 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--VQNVV---VSGLLSPDGLA 85 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC--CCEEE---EECCSCCCEEE
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc--eEEEE---cCCCCCccEEE
Confidence 4678899987663 222222 223467899998654 555555678899998865421 01111 11122344566
Q ss_pred Ee-CCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC--CCeEEEEECCCCeEEEEEecC
Q psy8748 1790 FI-DDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV--DKSCKLWDFREKKCVQTFFGH 1865 (2004)
Q Consensus 1790 fs-dd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~--DGsIrIWDlrs~k~I~tl~~h 1865 (2004)
+. .++ .+++-...+.|.+++.+..... .+..........++++|.+..++.+.. .+.|..+++............
T Consensus 86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~ 164 (318)
T 3sov_A 86 CDWLGEKLYWTDSETNRIEVSNLDGSLRK-VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 164 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred EEcCCCeEEEEECCCCEEEEEECCCCcEE-EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC
Confidence 65 233 4455556788999998754432 333344456789999997777766653 578888887643322222233
Q ss_pred CCCeEEEEEeCCCCEEEEE-ECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q psy8748 1866 EADVNSVCFHPSGLAFATG-SEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTH 1944 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSg-S~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~ 1944 (2004)
-...+.+++++++..|+.+ +..+.|..+|+..... ..+.. ........+++.. +..+.+-...+.|..++..+++.
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVK-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEec-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 3457899999966666555 4567899999874333 33322 2234456777753 34455555678999999888877
Q ss_pred eEEEccCCCCeEEEEE
Q psy8748 1945 NGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1945 l~tL~gHs~~VtsLaF 1960 (2004)
...+........+++.
T Consensus 242 ~~~i~~~~~~P~~i~v 257 (318)
T 3sov_A 242 LREIHSDIFSPMDIHA 257 (318)
T ss_dssp CEEEECCCSSCCCEEE
T ss_pred eEEEeCCCCCCcEEEE
Confidence 6666543334444444
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.54 E-value=0.017 Score=67.19 Aligned_cols=203 Identities=14% Similarity=0.187 Sum_probs=130.5
Q ss_pred cccccccceeEEEEeCCCCEEE-EEeCCCeEEEEECCCCceEEEeeCC-CCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCV-SGSLDGKLIIWDTWTGNKTQVIPLR-SAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LA-SGS~DGtIrVWDl~Tgk~l~ti~~H-t~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
.+.|-.+.+..++|+|+++.|+ +...++.|...|.. |+.++.+... ......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999776554 56778899999987 8888887532 2457889999888877776677889999987
Q ss_pred CCCCCCcceEEEEEe------cCccceeeeEEeCCC-cEEEeecCCeEEEEECC---CCceeEEee------ccccCCeE
Q psy8748 1765 NRDSTGAAKVIRELL------GYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLE---TGQRIHEVA------QAHIGDVV 1828 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~------gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~---tg~~i~~il------~~h~~~It 1828 (2004)
.... ........ ........++|.+.+ .++++.......+|.++ ....+.... ..+...+.
T Consensus 100 ~~~~---i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 100 PNSE---VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp TTCC---EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred CCCe---eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 6431 11111111 223446789998654 66666665444444433 111111110 11334678
Q ss_pred EEEECCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCC---------CCeEEEEEeCCCCEEEEEECCCeEEEEEc
Q psy8748 1829 SISLSPDGQ-YFVTGSVDKSCKLWDFREKKCVQTFFGHE---------ADVNSVCFHPSGLAFATGSEDKTARLFDI 1895 (2004)
Q Consensus 1829 sLafSPdg~-~LaSGS~DGsIrIWDlrs~k~I~tl~~h~---------s~ItsIafSPdg~~LaSgS~DGtIrIWDL 1895 (2004)
+++++|... +++.....+.+.++|.. ++.+..+.-.. .....|+|.++|+.++ .++.+.++.|.-
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~~ 251 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFTP 251 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEEC
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEEe
Confidence 999999655 55555566789999965 55555543221 2568999999998544 467776666653
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.52 E-value=0.037 Score=74.11 Aligned_cols=237 Identities=9% Similarity=-0.057 Sum_probs=142.3
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
+|+.+ ....|+..++........+. ....+.+++|++.+. ++++-...+.|+.++++...... .....+......
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~--~~~~vi~~~l~~ 472 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--SYDTVISRDIQA 472 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------CEEEECSSCSC
T ss_pred ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc--ceeEEEecCCCC
Confidence 34433 34568888887665544444 345678999998554 45555566889888886432100 111222223334
Q ss_pred eeeeEEe--CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC--CCeEEEEECCCCeEEE
Q psy8748 1785 LSSCRFI--DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV--DKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1785 Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~--DGsIrIWDlrs~k~I~ 1860 (2004)
...+++. .+..+++-...+.|.+.++...... .+..........|+++|.+.+|+.+.. .+.|...++.......
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~ 551 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 551 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEE-EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence 4556665 3344556667789999998755433 343344456889999998777766653 2679999987554433
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEE
Q psy8748 1861 TFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWD 1938 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWD 1938 (2004)
.+...-.....|++++.+..|+.+. ..+.|..+++....................+++. +.+|+... ..+.|...|
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEe
Confidence 3333345788999998766666554 4568999998754443333222222334566663 34555444 568899999
Q ss_pred CCCCeeeEEEc
Q psy8748 1939 LLKTTHNGVLS 1949 (2004)
Q Consensus 1939 L~tge~l~tL~ 1949 (2004)
..+++.+..+.
T Consensus 630 k~tG~~~~~l~ 640 (791)
T 3m0c_C 630 RLTGSDVNLLA 640 (791)
T ss_dssp TTTCCCCEEEE
T ss_pred CCCCcceEEee
Confidence 87877666654
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=0.013 Score=72.85 Aligned_cols=238 Identities=9% Similarity=0.071 Sum_probs=136.9
Q ss_pred ceEEEEEec-CCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEeecC-----CeEEEE
Q psy8748 1736 WVMSVAFAQ-SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGSGD-----MKIVTW 1808 (2004)
Q Consensus 1736 ~ItsLafSP-dg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~D-----GtI~IW 1808 (2004)
....++|+| ++..|+++...+.|+.+|.+... +..+.........+++..++. ++++... ..+..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence 457889998 46666666655888889886531 222333445567788876554 6665542 134444
Q ss_pred ECCCCceeEEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEE-E
Q psy8748 1809 NLETGQRIHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVCFHPSGLAFATG-S 1885 (2004)
Q Consensus 1809 Dl~tg~~i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k~I~tl~-~h~s~ItsIafSPdg~~LaSg-S 1885 (2004)
+............ .......++++| ++..+++-..++.|..|+...+....... ........++|+|+|++++.+ .
T Consensus 211 ~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 211 TRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp EGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred eCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 4332211111111 233457788999 66655555567899999998766422222 222457899999999955554 4
Q ss_pred CCCeEEEEEccCC--ce--eEEEcCC-C---C---------CCCeE-EEEEc--------CCCCEEEEEeCCCeEEEEEC
Q psy8748 1886 EDKTARLFDIRAD--QQ--IATYLPP-N---K---------NSGFT-SCAVS--------SSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1886 ~DGtIrIWDLrtg--k~--i~t~~~~-~---~---------~s~It-sLafS--------PdG~~LaSGSsDGsIrIWDL 1939 (2004)
..+.|..++.... .. ...+... . . -.... .+++. ++|+++++-..++.|+.++
T Consensus 290 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~- 368 (430)
T 3tc9_A 290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT- 368 (430)
T ss_dssp TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-
T ss_pred CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-
Confidence 5778999887632 11 1122110 0 0 01122 45553 3466555555678899988
Q ss_pred CCCeeeEEEcc----C-------------CCCeEEEEEcCC-CCEEEEEECCCeEEEEECC
Q psy8748 1940 LKTTHNGVLSG----H-------------ENRVTSISLSPN-GMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1940 ~tge~l~tL~g----H-------------s~~VtsLaFSPD-g~~LaSgS~DGtIrIWdls 1982 (2004)
.++........ . -.....++++++ +.++++-...+.|+.++++
T Consensus 369 ~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 369 PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 45654433311 0 114789999984 5555555556778877654
No 286
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.49 E-value=0.28 Score=68.39 Aligned_cols=269 Identities=13% Similarity=0.117 Sum_probs=139.8
Q ss_pred CCEEEEEeCCCeEEEE--ECCCCceEEE--eeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEE
Q psy8748 1704 SRHCVSGSLDGKLIIW--DTWTGNKTQV--IPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIREL 1778 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVW--Dl~Tgk~l~t--i~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl 1778 (2004)
..+|..|-.||.+.-+ |..+|..... ......++.=..+...+. .+++++ +....+|.-+. .....-
T Consensus 617 ~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~-------~l~~s~ 688 (1158)
T 3ei3_A 617 SHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNH-------KLVFSN 688 (1158)
T ss_dssp EEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESSS-------SEEEEE
T ss_pred CcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcCC-------ceEEec
Confidence 3578888889987555 4445544332 222334554444444443 333333 44444443321 111111
Q ss_pred ecCccceeeeEEeCCC---cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC----------
Q psy8748 1779 LGYEGFLSSCRFIDDT---TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD---------- 1845 (2004)
Q Consensus 1779 ~gh~~~Vssvafsdd~---~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D---------- 1845 (2004)
.........+.|+... -++ +..++.+++..+..-+......-.-...+..++++|+.+.++++..+
T Consensus 689 l~~~~v~~~~~F~se~~~~g~v-~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~ 767 (1158)
T 3ei3_A 689 VNLKEVNYMCPLNSDGYPDSLA-LANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 767 (1158)
T ss_dssp BSSSCCCEEEEECCSSSTTEEE-EECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSE
T ss_pred cChHHhceEeccCcccCCCcEE-EEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEecccccccccc
Confidence 1112222334444322 233 33345688887754433322222344567888888877765554311
Q ss_pred ---------------------------------------CeEEEEECCCCeEEEEEec-CCCCeEEEEEeC----CCCEE
Q psy8748 1846 ---------------------------------------KSCKLWDFREKKCVQTFFG-HEADVNSVCFHP----SGLAF 1881 (2004)
Q Consensus 1846 ---------------------------------------GsIrIWDlrs~k~I~tl~~-h~s~ItsIafSP----dg~~L 1881 (2004)
+.|+++|..+++.+..+.- ....+.+++... ...++
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~l 847 (1158)
T 3ei3_A 768 TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYF 847 (1158)
T ss_dssp EESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEE
T ss_pred chhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEE
Confidence 2366777777766555432 233455555432 24688
Q ss_pred EEEE----------CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC
Q psy8748 1882 ATGS----------EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH 1951 (2004)
Q Consensus 1882 aSgS----------~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH 1951 (2004)
++|+ ..|.|.+|++..++. .........+++++++-- +| +|++|- ...|++|++...+.+..-..+
T Consensus 848 vVGTa~~~~~e~~~~~Gri~vf~v~~~kL-~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~ 923 (1158)
T 3ei3_A 848 IVGTAMVYPEEAEPKQGRIVVFQYSDGKL-QTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNH 923 (1158)
T ss_dssp EEEEEECCTTCSSCCCEEEEEEEEETTEE-EEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEE
T ss_pred EEEeeecCCCCCCCCceEEEEEEEECCEE-EEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeec
Confidence 8887 358899999974433 222222334667776543 45 555553 578999999765533311111
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEE--CCCCe
Q psy8748 1952 ENRVTSISLSPNGMALVTSSWDQFVKVWQ--ESNTI 1985 (2004)
Q Consensus 1952 s~~VtsLaFSPDg~~LaSgS~DGtIrIWd--lstg~ 1985 (2004)
-..|..+.....+++++.|..-..|.++. ...++
T Consensus 924 ~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~ 959 (1158)
T 3ei3_A 924 YNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN 959 (1158)
T ss_dssp CCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTE
T ss_pred cccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCe
Confidence 12233333333577889888777777654 44443
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.46 E-value=0.011 Score=73.72 Aligned_cols=237 Identities=12% Similarity=0.075 Sum_probs=138.5
Q ss_pred ceEEEEEecC--CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCC-----eEEEE
Q psy8748 1736 WVMSVAFAQS--GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM-----KIVTW 1808 (2004)
Q Consensus 1736 ~ItsLafSPd--g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DG-----tI~IW 1808 (2004)
....++|+|+ +..|+.+...+.|+.++..++. +..+.........+++.+++.++++...+ .+..+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~-------v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY-------VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE-------EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE-------EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEE
Confidence 4568999984 4455555544889999885432 22333344557788888666566665422 23334
Q ss_pred ECCCCceeEEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEEec--CCCCeEEEEEeCCCCEEEEEE
Q psy8748 1809 NLETGQRIHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTFFG--HEADVNSVCFHPSGLAFATGS 1885 (2004)
Q Consensus 1809 Dl~tg~~i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~--h~s~ItsIafSPdg~~LaSgS 1885 (2004)
+...+....... ........++++| +|.++++-..++.|+.+|..++.....+.. .......++|+|++++|+.+.
T Consensus 213 ~~~~~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 213 TRASGFTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp CGGGTTCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred ECCCCeeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 433222110111 1234456788999 666555555678899999887765233221 122335799999999655554
Q ss_pred -CCCeEEEEEccC--Cce--eEEEcCC-C------------CCCCeEEEEE---------cCCCCEEEEEeCCCeEEEEE
Q psy8748 1886 -EDKTARLFDIRA--DQQ--IATYLPP-N------------KNSGFTSCAV---------SSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1886 -~DGtIrIWDLrt--gk~--i~t~~~~-~------------~~s~ItsLaf---------SPdG~~LaSGSsDGsIrIWD 1938 (2004)
..+.|+.++... +.. ...+... . .-.....+++ .++|+++++-..++.|+.++
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 567899988652 221 1111110 0 1123567888 77777777766778999998
Q ss_pred CCCCeeeEEEccC------------------CCCeEEEEEc-CCCCEEEEEECCCeEEEEECC
Q psy8748 1939 LLKTTHNGVLSGH------------------ENRVTSISLS-PNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1939 L~tge~l~tL~gH------------------s~~VtsLaFS-PDg~~LaSgS~DGtIrIWdls 1982 (2004)
. ++.... +.+. -....+|+++ ++|.++++=...+.|+.++++
T Consensus 372 ~-~G~v~t-~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 372 P-EGRVTT-YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp T-TSEEEE-EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred C-CCCEEE-EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 4 564433 3221 1236788888 566555555556777777654
No 288
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.46 E-value=0.0034 Score=83.49 Aligned_cols=152 Identities=11% Similarity=0.084 Sum_probs=87.3
Q ss_pred EEEEECCCCCEEEEEECC-----CeEEEEECCCCe--EEEEEe-cCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEEcc
Q psy8748 1828 VSISLSPDGQYFVTGSVD-----KSCKLWDFREKK--CVQTFF-GHEADVNSVCFHPSGLAFATGSE---DKTARLFDIR 1896 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS~D-----GsIrIWDlrs~k--~I~tl~-~h~s~ItsIafSPdg~~LaSgS~---DGtIrIWDLr 1896 (2004)
..++|+|||+.|+....| ..|+.+++.++. ....+. ........+.|+|||++|+..+. ...|.++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 357899999877777654 258888887653 122332 22344668899999998877653 3468889988
Q ss_pred CCc-ee--EEEcCCCCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeEE-EccCCC--CeEEEEEcCCCCE
Q psy8748 1897 ADQ-QI--ATYLPPNKNSGFTSCAVSSSGRYIFCGSDD----NNVHVWDLLKTTHNGV-LSGHEN--RVTSISLSPNGMA 1966 (2004)
Q Consensus 1897 tgk-~i--~t~~~~~~~s~ItsLafSPdG~~LaSGSsD----GsIrIWDL~tge~l~t-L~gHs~--~VtsLaFSPDg~~ 1966 (2004)
++. .. ..+. .........+.|+..+.+++....+ ..|..+|+.++..... +..|.. .+.++.+. .+.+
T Consensus 304 ~~~~~~~~~~l~-~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~l 381 (751)
T 2xe4_A 304 KGNAHNTLEIVR-PREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYL 381 (751)
T ss_dssp SCTTCCCEEESS-CCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEE
T ss_pred CCCCCceeEEee-cCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEE
Confidence 753 22 2332 2233444555554434444444433 3677788765322222 223333 35566664 3345
Q ss_pred EEEEECCCeEE--EEEC
Q psy8748 1967 LVTSSWDQFVK--VWQE 1981 (2004)
Q Consensus 1967 LaSgS~DGtIr--IWdl 1981 (2004)
+++...||..+ ++++
T Consensus 382 v~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 382 VVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCEEEEEEEec
Confidence 56667777654 4554
No 289
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.45 E-value=0.27 Score=64.15 Aligned_cols=283 Identities=10% Similarity=0.039 Sum_probs=154.7
Q ss_pred ceeEEEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeec--CCeEEEEEcCCCCCCC
Q psy8748 1694 KVNSVHYSGDSRHC-VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGM--DNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~L-ASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~--DGtIrVWDl~t~~~~~ 1770 (2004)
....+++.+.++.| ++-...+.|.+.+.........+...-....+|+++|.+..|+.+.. .+.|...+++...
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~--- 161 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS--- 161 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS---
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc---
Confidence 56789999865544 45556789999998654433333344455788999997665555543 3566666665321
Q ss_pred cceEEEEEecCccceeeeEEeC-CCcEEEe-ecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFID-DTTLLTG-SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSC 1848 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsd-d~~LlSg-S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsI 1848 (2004)
...+ ....-.....+++.. ++.++.+ ...+.|..+|++..... .+..+.......+++..+ ..+++-...+.|
T Consensus 162 -~~~l--~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~-~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V 236 (619)
T 3s94_A 162 -RFII--INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLPHPFALTLFED-ILYWTDWSTHSI 236 (619)
T ss_dssp -CEEE--ECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCSE
T ss_pred -eEEE--EeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE-EEEeCCCCCceEEEEeCC-EEEEecCCCCEE
Confidence 1111 112233456677763 4454444 45678888888654332 222222223346677644 333343456778
Q ss_pred EEEECCCCeEEEEEec-----------CC--------------CCeEEEEE-----------eCCC--------------
Q psy8748 1849 KLWDFREKKCVQTFFG-----------HE--------------ADVNSVCF-----------HPSG-------------- 1878 (2004)
Q Consensus 1849 rIWDlrs~k~I~tl~~-----------h~--------------s~ItsIaf-----------SPdg-------------- 1878 (2004)
...|..+++....+.. |. +....+|+ +|.|
T Consensus 237 ~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~ 316 (619)
T 3s94_A 237 LACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGA 316 (619)
T ss_dssp EEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSC
T ss_pred EEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCC
Confidence 8888766543322211 00 00111111 1111
Q ss_pred -CEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEccCCCCeE
Q psy8748 1879 -LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGVLSGHENRVT 1956 (2004)
Q Consensus 1879 -~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~tL~gHs~~Vt 1956 (2004)
.+|+.+ ..+.|+..++..............-..+..++|++.+..|+.++ ..+.|+.++.........+...-....
T Consensus 317 ~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~ 395 (619)
T 3s94_A 317 TELLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD 395 (619)
T ss_dssp SEEEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred ceEEEEE-cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC
Confidence 123333 24567777776543322221212234578899999666666555 478899999865444444443345678
Q ss_pred EEEEcCCCCEEE-EEECCCeEEEEECCCCe
Q psy8748 1957 SISLSPNGMALV-TSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1957 sLaFSPDg~~La-SgS~DGtIrIWdlstg~ 1985 (2004)
++++...+..|+ +-+..+.|.+.++++..
T Consensus 396 GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 396 GIAVDWVARNLYWTDTGTDRIEVTRLNGTM 425 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred ceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence 999987555444 44456889999887653
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.42 E-value=0.079 Score=65.21 Aligned_cols=233 Identities=8% Similarity=-0.022 Sum_probs=140.8
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEE-eecCCeEEEEECCCCc---eeEEeecc
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLT-GSGDMKIVTWNLETGQ---RIHEVAQA 1822 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlS-gS~DGtI~IWDl~tg~---~i~~il~~ 1822 (2004)
+++.+. ...|+..+++... . ..+......+..++|.. ++.++. -...+.|+.+++.... ....+...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~----~---~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~ 156 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSE----Y---TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 156 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCS----C---EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS
T ss_pred eeEEec-cceeEEEccCCcc----e---eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC
Confidence 344333 4568887776432 1 11223345667788874 444444 4457889999887522 12233333
Q ss_pred ccCCeEEEEECCCCCEEE-EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC--CCeEEEEEccCCc
Q psy8748 1823 HIGDVVSISLSPDGQYFV-TGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE--DKTARLFDIRADQ 1899 (2004)
Q Consensus 1823 h~~~ItsLafSPdg~~La-SGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~--DGtIrIWDLrtgk 1899 (2004)
.......+++++.++.|+ +-...+.|.+.+++.......+...-.....|++.|.+..|+.... .+.|...++....
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 445678899998555444 4456788999998766544444444456889999996666655542 3789999987443
Q ss_pred eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeE
Q psy8748 1900 QIATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTTHNGVLSG--HENRVTSISLSPNGMALVTSSWDQFV 1976 (2004)
Q Consensus 1900 ~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge~l~tL~g--Hs~~VtsLaFSPDg~~LaSgS~DGtI 1976 (2004)
..... . ........+++++++..|+.++. .+.|..+|+........... .-....++++. .+.++++-...+.|
T Consensus 237 ~~~~~-~-~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 237 IYSLV-T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp CEEEE-C-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred cEEEE-E-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 33322 1 22245789999998877777654 57899999864433333332 23456677773 33455555566889
Q ss_pred EEEECCCCeEEEEEE
Q psy8748 1977 KVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1977 rIWdlstg~l~k~Ik 1991 (2004)
..++..+|+....+.
T Consensus 314 ~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 314 FSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEESSSCCCCEEEE
T ss_pred EEEEcCCCCceEEEe
Confidence 999866665444443
No 291
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.36 E-value=0.016 Score=67.28 Aligned_cols=236 Identities=14% Similarity=0.216 Sum_probs=124.5
Q ss_pred CCCEEEEee-cC-----CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC-----CeEEEEECCCC
Q psy8748 1745 SGNFVACGG-MD-----NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD-----MKIVTWNLETG 1813 (2004)
Q Consensus 1745 dg~~LaSGS-~D-----GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D-----GtI~IWDl~tg 1813 (2004)
++..++.|+ .+ ..+.+||..+.. ......... ...-.++...++..++.|+.+ ..+.+||..++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~----W~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQE----WSFLPSITR-KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTE----EEECCCCSS-CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCe----EEeCCCCCh-hhccccEEEECCEEEEEcCCCCCccCceEEEEECCCC
Confidence 345566666 32 357778876542 111111111 111223333455566677654 46899999887
Q ss_pred c---eeEEe-eccccCCeEEEEECCCCCEEEEEECC-----CeEEEEECCCCeEEEE--EecCCCCeEEEEEeCCCCEEE
Q psy8748 1814 Q---RIHEV-AQAHIGDVVSISLSPDGQYFVTGSVD-----KSCKLWDFREKKCVQT--FFGHEADVNSVCFHPSGLAFA 1882 (2004)
Q Consensus 1814 ~---~i~~i-l~~h~~~ItsLafSPdg~~LaSGS~D-----GsIrIWDlrs~k~I~t--l~~h~s~ItsIafSPdg~~La 1882 (2004)
+ ..... ..........+.+ +++.++.|+.+ ..+.+||..+.+-... ........ +++. -+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVV-ASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEE-ETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEE-ECCEEEE
Confidence 6 33211 1111111222222 56677777654 3688999887653322 21111111 2222 2667777
Q ss_pred EEECC-----CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEEccCC
Q psy8748 1883 TGSED-----KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD-----NNVHVWDLLKTTHNGVLSGHE 1952 (2004)
Q Consensus 1883 SgS~D-----GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD-----GsIrIWDL~tge~l~tL~gHs 1952 (2004)
.|+.+ ..+.+||..+.+-...-..+........+.+ ++++++.|+.+ ..+.+||..+.+-...-....
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC
Confidence 77754 4588999887654433222222222233333 56777777764 468999998765443221111
Q ss_pred C--CeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEEeec
Q psy8748 1953 N--RVTSISLSPNGMALVTSSWD-----QFVKVWQESNTIVWKVLKVYN 1994 (2004)
Q Consensus 1953 ~--~VtsLaFSPDg~~LaSgS~D-----GtIrIWdlstg~l~k~Ik~~~ 1994 (2004)
. ....+.+ ++++++.||.+ ..|.+||..+.. |..+..+.
T Consensus 243 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~~ 288 (301)
T 2vpj_A 243 PRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS-WEVVTSMG 288 (301)
T ss_dssp CCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE-EEEEEEEE
T ss_pred cccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe-EEEcCCCC
Confidence 1 1222222 67777888765 468899998864 77765543
No 292
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.21 E-value=0.03 Score=65.05 Aligned_cols=234 Identities=13% Similarity=0.137 Sum_probs=120.1
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC-----CeEEEEEcCCCCCCCc
Q psy8748 1703 DSRHCVSGS-LD-----GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD-----NMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1703 DG~~LASGS-~D-----GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D-----GtIrVWDl~t~~~~~~ 1771 (2004)
++..++.|| .+ ..+.+||..+++-...-..........+...++..++.|+.+ ..+.+||..+... ..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~-~~ 92 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADED-GV 92 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTT-CC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCC-Ce
Confidence 345566666 32 468899988775433211111111111222357778888765 3688888876430 00
Q ss_pred ceEEEEEecCccceeeeEEeCCCcEEEeecC-----CeEEEEECCCCceeEEeeccc-cCCeEEEEECCCCCEEEEEECC
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTTLLTGSGD-----MKIVTWNLETGQRIHEVAQAH-IGDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D-----GtI~IWDl~tg~~i~~il~~h-~~~ItsLafSPdg~~LaSGS~D 1845 (2004)
............ -.++...++..++.|+.+ ..+.+||..+++......... .....++.+ +++.++.|+.+
T Consensus 93 W~~~~~~p~~r~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 169 (301)
T 2vpj_A 93 WYSVAPMNVRRG-LAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYD 169 (301)
T ss_dssp CEEECCCSSCCB-SCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eEECCCCCCCcc-ceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCC
Confidence 222222222111 222333355556666643 468899998876442211111 111122222 56777777754
Q ss_pred -----CeEEEEECCCCeEEEEEecCCCC-eEEEEEeCCCCEEEEEECC-----CeEEEEEccCCceeEEEcCCCCCCCeE
Q psy8748 1846 -----KSCKLWDFREKKCVQTFFGHEAD-VNSVCFHPSGLAFATGSED-----KTARLFDIRADQQIATYLPPNKNSGFT 1914 (2004)
Q Consensus 1846 -----GsIrIWDlrs~k~I~tl~~h~s~-ItsIafSPdg~~LaSgS~D-----GtIrIWDLrtgk~i~t~~~~~~~s~It 1914 (2004)
..+.+||..+.+-...-...... -.+++. -++..++.|+.+ ..+.+||+.+.+-...-..+.......
T Consensus 170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 248 (301)
T 2vpj_A 170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVG 248 (301)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccccee
Confidence 35899998877543321111111 112222 256677777764 468999998765443322222222223
Q ss_pred EEEEcCCCCEEEEEeCC-----CeEEEEECCCCe
Q psy8748 1915 SCAVSSSGRYIFCGSDD-----NNVHVWDLLKTT 1943 (2004)
Q Consensus 1915 sLafSPdG~~LaSGSsD-----GsIrIWDL~tge 1943 (2004)
.+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 249 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 249 ATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 3333 67777777765 357888886654
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.21 E-value=0.12 Score=61.67 Aligned_cols=232 Identities=10% Similarity=0.044 Sum_probs=130.1
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee---CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP---LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~---~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~ 1769 (2004)
..+.+++|++ +..++ ++.+|.|.. ....|+.-.... .+...+..+.+.+++..++++. +|.| |....+.
T Consensus 80 ~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v--~~S~DgG-- 151 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAI--YRTKDSG-- 151 (327)
T ss_dssp CEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCE--EEESSTT--
T ss_pred ccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccE--EEEcCCC--
Confidence 4678899986 44444 456675544 223344333332 1334578888877777666554 5533 3332211
Q ss_pred CcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEE
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIr 1849 (2004)
...... ..+....+..+.+.+++.+++.+.+|.++.-+-..+..-..........+..+.+.+++..+ .++.+|.++
T Consensus 152 ~tW~~~--~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~ 228 (327)
T 2xbg_A 152 KNWQAL--VQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIA 228 (327)
T ss_dssp SSEEEE--ECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEE
T ss_pred CCCEEe--ecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEE
Confidence 122222 22344567777887777777776677665543221332222223455678899999988755 555688887
Q ss_pred EEECCCCeEEEEEe-c---CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC-CCCCCeEEEEEcCCCCE
Q psy8748 1850 LWDFREKKCVQTFF-G---HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP-NKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1850 IWDlrs~k~I~tl~-~---h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~-~~~s~ItsLafSPdG~~ 1924 (2004)
+.+...++.-..+. . ....+.++.+.+++..++++ .+|.+ .+..+.++.-...... .....+..+.|.+++.
T Consensus 229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~- 305 (327)
T 2xbg_A 229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ- 305 (327)
T ss_dssp EEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-
T ss_pred EecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-
Confidence 77533233222222 1 22358889999887766655 47766 4455545444333211 1224567788875554
Q ss_pred EEEEeCCCeEEEEE
Q psy8748 1925 IFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1925 LaSGSsDGsIrIWD 1938 (2004)
+++++.+|.|.-++
T Consensus 306 ~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 306 GFILGQKGILLRYV 319 (327)
T ss_dssp EEEECSTTEEEEEC
T ss_pred eEEEcCCceEEEEc
Confidence 55666789877665
No 294
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.21 E-value=0.33 Score=67.78 Aligned_cols=284 Identities=15% Similarity=0.148 Sum_probs=160.7
Q ss_pred ccceeEEEEeCC------CCEEEEEeC-CCeEEEEECCCCceEEEeeCC-CCceEEEEEec--CCCEEEEeecCCeEEEE
Q psy8748 1692 INKVNSVHYSGD------SRHCVSGSL-DGKLIIWDTWTGNKTQVIPLR-SAWVMSVAFAQ--SGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1692 t~~VtsLaFSPD------G~~LASGS~-DGtIrVWDl~Tgk~l~ti~~H-t~~ItsLafSP--dg~~LaSGS~DGtIrVW 1761 (2004)
.+.|.|+++.|. +++++.|.. |++|+|+++.+.+.+...... .....++.+.. ...+|.+|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 357999999863 468999997 999999999887766554332 12344554432 34588899999998777
Q ss_pred EcCCCCCCCcceEEE-EEecCccceeeeEEeC-CCc-EEEeecCCeEEEEECCCCceeEEeeccccCCe-EEEEECCC--
Q psy8748 1762 DLNNRDSTGAAKVIR-ELLGYEGFLSSCRFID-DTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDV-VSISLSPD-- 1835 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~-sl~gh~~~Vssvafsd-d~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~I-tsLafSPd-- 1835 (2004)
.++... +.....+ ...| ..++.-..+.. +.. +++.+ +....+|--+ ++....- -....+ ....|+.+
T Consensus 633 ~~d~~t--g~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~--l~~~~v~~~~~F~se~~ 705 (1158)
T 3ei3_A 633 GLNIET--GLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSN--VNLKEVNYMCPLNSDGY 705 (1158)
T ss_dssp EECTTT--CCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEE--BSSSCCCEEEEECCSSS
T ss_pred EEcCCC--CccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEec--cChHHhceEeccCcccC
Confidence 765321 1122222 2223 33443333332 222 34443 4444444332 3322111 111123 23345432
Q ss_pred CCEEEEEECCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCCCCEEEEEECC--------------------------
Q psy8748 1836 GQYFVTGSVDKSCKLWDFREKK--CVQTFFGHEADVNSVCFHPSGLAFATGSED-------------------------- 1887 (2004)
Q Consensus 1836 g~~LaSGS~DGsIrIWDlrs~k--~I~tl~~h~s~ItsIafSPdg~~LaSgS~D-------------------------- 1887 (2004)
..-++..+ ++.++|..+.+.. .++++ .-...++.++++|+.+.++.+..+
T Consensus 706 ~~g~v~~~-~~~LrI~~i~~~~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1158)
T 3ei3_A 706 PDSLALAN-NSTLTIGTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSV 783 (1158)
T ss_dssp TTEEEEEC-SSCEEEEEECCSSSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEE
T ss_pred CCcEEEEc-CCceEEEEecccCCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcc
Confidence 23444443 5568888775322 23333 345678889999877765544311
Q ss_pred -----------------------CeEEEEEccCCceeEEEcCCCCCCCeEEEEE---cC-CCCEEEEEe----------C
Q psy8748 1888 -----------------------KTARLFDIRADQQIATYLPPNKNSGFTSCAV---SS-SGRYIFCGS----------D 1930 (2004)
Q Consensus 1888 -----------------------GtIrIWDLrtgk~i~t~~~~~~~s~ItsLaf---SP-dG~~LaSGS----------s 1930 (2004)
+.|+++|-.+++.+..+..... ..+.+++. .. ...++++|+ .
T Consensus 784 ~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~n-E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~ 862 (1158)
T 3ei3_A 784 SSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQN-EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPK 862 (1158)
T ss_dssp CCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTT-EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCC
T ss_pred cccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCC-cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCC
Confidence 2367777777777766654443 34444443 22 247899887 3
Q ss_pred CCeEEEEECCCCeeeEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q psy8748 1931 DNNVHVWDLLKTTHNGVL-SGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWK 1988 (2004)
Q Consensus 1931 DGsIrIWDL~tge~l~tL-~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k 1988 (2004)
.|.|++|++..++..... ....+.|++++-- +|+ |++|- ..+|++|++...+..+
T Consensus 863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L~ 918 (1158)
T 3ei3_A 863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKELR 918 (1158)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCEE
T ss_pred ceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCceEE
Confidence 588999998754433222 2346788888743 454 44443 4789999998765433
No 295
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.18 E-value=0.033 Score=64.81 Aligned_cols=233 Identities=15% Similarity=0.219 Sum_probs=120.7
Q ss_pred CCEEEEeecC----CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC-----CeEEEEECCCCcee
Q psy8748 1746 GNFVACGGMD----NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD-----MKIVTWNLETGQRI 1816 (2004)
Q Consensus 1746 g~~LaSGS~D----GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D-----GtI~IWDl~tg~~i 1816 (2004)
+..++.|+.+ ..+..||..+.. ........... .-.++...++..++.|+.+ ..+..||..+++..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEER----WHQVAELPSRR-CRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTE----EEEECCCSSCC-BSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCc----EeEcccCCccc-ccceEEEECCEEEEEeCcCCCccccceEEECCCCCcee
Confidence 3455555543 356777776532 12211111111 1122333455566677654 35889999877643
Q ss_pred EEeecc-ccCCeEEEEECCCCCEEEEEECCC-----eEEEEECCCCeEEEEEecCCC-CeEEEEEeCCCCEEEEEECC--
Q psy8748 1817 HEVAQA-HIGDVVSISLSPDGQYFVTGSVDK-----SCKLWDFREKKCVQTFFGHEA-DVNSVCFHPSGLAFATGSED-- 1887 (2004)
Q Consensus 1817 ~~il~~-h~~~ItsLafSPdg~~LaSGS~DG-----sIrIWDlrs~k~I~tl~~h~s-~ItsIafSPdg~~LaSgS~D-- 1887 (2004)
...... .........+ ++..++.|+.++ .+.+||..+.+-...-..... .-.+++. -+++.++.|+.+
T Consensus 91 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~ 167 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVA 167 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETT
T ss_pred eCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCC
Confidence 221111 1111222222 567777777654 588899887654322111111 1112222 256666666543
Q ss_pred -----CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEEccCC--CCe
Q psy8748 1888 -----KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD-----NNVHVWDLLKTTHNGVLSGHE--NRV 1955 (2004)
Q Consensus 1888 -----GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD-----GsIrIWDL~tge~l~tL~gHs--~~V 1955 (2004)
..+.+||..+.+-...-..+........+.+ ++++++.|+.+ ..+.+||..+.+-...-.... ..-
T Consensus 168 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA 245 (302)
T ss_dssp TTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC
Confidence 3588999887654433222222222233333 67777787764 368999997765433221111 111
Q ss_pred EEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEE
Q psy8748 1956 TSISLSPNGMALVTSSWDQ-----FVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1956 tsLaFSPDg~~LaSgS~DG-----tIrIWdlstg~l~k~Ik 1991 (2004)
..+. -++.+++.||.++ .+.+||..+.. |..+.
T Consensus 246 ~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~ 283 (302)
T 2xn4_A 246 GVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK-WTVVS 283 (302)
T ss_dssp EEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE-EEECS
T ss_pred eEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe-EEECC
Confidence 2222 2677788887654 48999999874 87765
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.16 E-value=0.057 Score=65.52 Aligned_cols=189 Identities=11% Similarity=0.235 Sum_probs=125.6
Q ss_pred CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC----CC---EEEEEEC---CCeEEEEECC--CCeEEEE
Q psy8748 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD----GQ---YFVTGSV---DKSCKLWDFR--EKKCVQT 1861 (2004)
Q Consensus 1794 ~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd----g~---~LaSGS~---DGsIrIWDlr--s~k~I~t 1861 (2004)
+.++.....+.+.+||+ +|+.+..+. .+.+..+..-|+ |+ ++++... +++|.+|++. ++. +..
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 34666667789999999 788776552 245666666552 22 2333333 4789999773 333 444
Q ss_pred Eec------CC-CCeEEEEE--eCC-CC-EEEEEECCCeEEEEEcc-------CCceeEEEcCCCCCCCeEEEEEcCCCC
Q psy8748 1862 FFG------HE-ADVNSVCF--HPS-GL-AFATGSEDKTARLFDIR-------ADQQIATYLPPNKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1862 l~~------h~-s~ItsIaf--SPd-g~-~LaSgS~DGtIrIWDLr-------tgk~i~t~~~~~~~s~ItsLafSPdG~ 1923 (2004)
+.. .. ..+..+|+ +|. +. ++++...+|.+..|++. +.+.+.++... +.+..|..++...
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~~g 192 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDEYG 192 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETTTT
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCCCC
Confidence 421 12 56677888 664 43 68888889999999983 33556666443 4688999999999
Q ss_pred EEEEEeCCCeEEEEECC-----CCeeeEEEc-cC-CCCeEEEEE--cCCCC-EEEEEE-CCCeEEEEECC-CCeEEEEE
Q psy8748 1924 YIFCGSDDNNVHVWDLL-----KTTHNGVLS-GH-ENRVTSISL--SPNGM-ALVTSS-WDQFVKVWQES-NTIVWKVL 1990 (2004)
Q Consensus 1924 ~LaSGSsDGsIrIWDL~-----tge~l~tL~-gH-s~~VtsLaF--SPDg~-~LaSgS-~DGtIrIWdls-tg~l~k~I 1990 (2004)
.|+++-++.-|..|+.+ +++.+..+. ++ ...+..|++ .++++ +|++++ .+++..+|+.. +.+....+
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 99999999778888865 345555542 22 246889988 45555 555555 57899999997 44433333
No 297
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.15 E-value=0.057 Score=62.93 Aligned_cols=236 Identities=11% Similarity=0.191 Sum_probs=124.4
Q ss_pred CCEEEEeecC--CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC----CeEEEEECCCCceeEEe
Q psy8748 1746 GNFVACGGMD--NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD----MKIVTWNLETGQRIHEV 1819 (2004)
Q Consensus 1746 g~~LaSGS~D--GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D----GtI~IWDl~tg~~i~~i 1819 (2004)
+..++.|+.+ ..+.+||..+.. ............ -.++...++..++.|+.+ ..+..||..+++.....
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~----W~~~~~~p~~r~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~ 86 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYS----WTDIRCPFEKRR-DAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL 86 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTE----EEECCCCSCCCB-SCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCC----EecCCCCCcccc-eeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC
Confidence 3455566543 467888876542 121111111111 122333455566777654 67899999887643221
Q ss_pred e-ccccCCeEEEEECCCCCEEEEEECC------CeEEEEECCCCeEEEEEecCCCC-eEEEEEeCCCCEEEEEEC-----
Q psy8748 1820 A-QAHIGDVVSISLSPDGQYFVTGSVD------KSCKLWDFREKKCVQTFFGHEAD-VNSVCFHPSGLAFATGSE----- 1886 (2004)
Q Consensus 1820 l-~~h~~~ItsLafSPdg~~LaSGS~D------GsIrIWDlrs~k~I~tl~~h~s~-ItsIafSPdg~~LaSgS~----- 1886 (2004)
. .........+.+ +++.++.|+.+ ..+.+||..+.+-...-...... -.+++. -+++.++.|+.
T Consensus 87 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 87 GPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNV 163 (306)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTT
T ss_pred CCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCC
Confidence 1 111111222222 56777777765 45899999877543221111111 112222 25666666654
Q ss_pred ----CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEE--EccCCCCe
Q psy8748 1887 ----DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD-----NNVHVWDLLKTTHNGV--LSGHENRV 1955 (2004)
Q Consensus 1887 ----DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD-----GsIrIWDL~tge~l~t--L~gHs~~V 1955 (2004)
-..+.+||..+.+-...-..+........+.+ ++++++.|+.+ ..+.+||..+.+-... +.......
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 241 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV 241 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCC
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccce
Confidence 34588999887654333222222222223333 66777777653 4589999877543322 11111122
Q ss_pred EEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEEeec
Q psy8748 1956 TSISLSPNGMALVTSSWD-----QFVKVWQESNTIVWKVLKVYN 1994 (2004)
Q Consensus 1956 tsLaFSPDg~~LaSgS~D-----GtIrIWdlstg~l~k~Ik~~~ 1994 (2004)
..+.+ ++.+++.||.+ ..+.+||..+.. |..+..+.
T Consensus 242 ~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~ 282 (306)
T 3ii7_A 242 KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK-WVANSKVR 282 (306)
T ss_dssp EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE-EEEEEEEE
T ss_pred eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe-EEeCCCcc
Confidence 33333 67788888854 568999998874 88776554
No 298
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.13 E-value=0.075 Score=64.24 Aligned_cols=230 Identities=12% Similarity=0.121 Sum_probs=123.8
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceE--EEee---CCCCceEEEEEecC---CCEEEEeec-C-----Ce
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKT--QVIP---LRSAWVMSVAFAQS---GNFVACGGM-D-----NM 1757 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l--~ti~---~Ht~~ItsLafSPd---g~~LaSGS~-D-----Gt 1757 (2004)
-...+.++|.|+|+++++ ..+|.|++++ +++.. ..+. ........++|+|+ +..|.++.. . +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999995554 5679999998 45422 1121 12356889999998 555544433 2 66
Q ss_pred EEEEEcCCCCCCCcceEEEEEe---cCccceeeeEEeCCCcEEEeecC--------------CeEEEEECCCC-------
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELL---GYEGFLSSCRFIDDTTLLTGSGD--------------MKIVTWNLETG------- 1813 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~---gh~~~Vssvafsdd~~LlSgS~D--------------GtI~IWDl~tg------- 1813 (2004)
|..|+...............+. +.......+.|.+++.++++..+ |.|.-++.+..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 7778776421100111122222 11223457888877776665432 56777766531
Q ss_pred -----ceeEEeeccccCCeEEEEECC-CCCEEEEEECCCe--------EEEEECCC----------------CeEEEEEe
Q psy8748 1814 -----QRIHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKS--------CKLWDFRE----------------KKCVQTFF 1863 (2004)
Q Consensus 1814 -----~~i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGs--------IrIWDlrs----------------~k~I~tl~ 1863 (2004)
........++ .....++|+| ++.++++-...+. |.+..-.. ..++..+
T Consensus 187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~- 264 (352)
T 2ism_A 187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW- 264 (352)
T ss_dssp TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence 0111111222 2356789999 5554444332222 33322110 0112222
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce------eEEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1864 GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ------IATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1864 ~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~------i~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
.+......++| .+|..+++....+.|...++..... ...+. .....+..+++.|||.++++..
T Consensus 265 ~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCcEEEEEe
Confidence 22234567777 4666666666677888888764431 12222 1235688999999998776654
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.03 E-value=1.3 Score=57.87 Aligned_cols=292 Identities=8% Similarity=-0.022 Sum_probs=162.3
Q ss_pred ccceeEEEEeCCCCEEEEE-eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSG-SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASG-S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
-...+.|+++++++.|..+ ...+.|...|+..........+......++++..+ ..+++-...+.|...|..++....
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence 3467899999876666555 44577888887544333222222223346676544 444454556778777765543110
Q ss_pred -------cceEEEEEecC------------ccceeeeEE------------e------C--------CCcEEEeecCCeE
Q psy8748 1771 -------AAKVIRELLGY------------EGFLSSCRF------------I------D--------DTTLLTGSGDMKI 1805 (2004)
Q Consensus 1771 -------~~k~i~sl~gh------------~~~Vssvaf------------s------d--------d~~LlSgS~DGtI 1805 (2004)
....+...... .+.+..++. . + ...++.-+..+.|
T Consensus 249 ~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i 328 (619)
T 3s94_A 249 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDL 328 (619)
T ss_dssp ECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCE
T ss_pred EEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccce
Confidence 00001111000 000100111 0 0 1113333344567
Q ss_pred EEEECCCCceeEEe-eccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC-CCEEE
Q psy8748 1806 VTWNLETGQRIHEV-AQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPS-GLAFA 1882 (2004)
Q Consensus 1806 ~IWDl~tg~~i~~i-l~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPd-g~~La 1882 (2004)
+..++......... .......+.+++|++.+..|+.+. ..+.|+.++.........+...-....++++... ++.++
T Consensus 329 ~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~ 408 (619)
T 3s94_A 329 RRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYW 408 (619)
T ss_dssp EEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE
T ss_pred EEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEE
Confidence 77777655422111 112234578899998666666555 5678999998754433333333356779999874 44555
Q ss_pred EEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEccCCCCeEEEEE
Q psy8748 1883 TGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD--DNNVHVWDLLKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1883 SgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs--DGsIrIWDL~tge~l~tL~gHs~~VtsLaF 1960 (2004)
+-+..+.|.+.++..... ..+.. ..-.....++++|...+|+..+. .+.|...++............-...+++++
T Consensus 409 tD~~~~~I~v~~~~G~~~-~~l~~-~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~Glal 486 (619)
T 3s94_A 409 TDTGTDRIEVTRLNGTMR-KILIS-EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLAL 486 (619)
T ss_dssp EETTTTEEEEEETTSCSC-EEEEC-TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred EeCCCCcEEEEeCCCCeE-EEEEE-CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEE
Confidence 555678899999875433 33322 23356789999997555555543 367777776433332223334567889999
Q ss_pred cCCCCEEEEEEC-CCeEEEEECCCCeE
Q psy8748 1961 SPNGMALVTSSW-DQFVKVWQESNTIV 1986 (2004)
Q Consensus 1961 SPDg~~LaSgS~-DGtIrIWdlstg~l 1986 (2004)
++++..|+.+.. .+.|..+++++...
T Consensus 487 D~~~~~LY~aD~~~~~I~~~~~dG~~~ 513 (619)
T 3s94_A 487 DYDEGKIYWGDAKTDKIEVMNTDGTGR 513 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred cccCCEEEEEECCCCEEEEEecCCCce
Confidence 987777777754 47899999876643
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.03 E-value=0.002 Score=85.21 Aligned_cols=243 Identities=10% Similarity=-0.020 Sum_probs=135.7
Q ss_pred CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEe-ecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1713 DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACG-GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSG-S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.+.|++.++.+......+.. ...+.+++|++.+..|+.+ ...+.|+.+++.......... ..+.........+++.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~--~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAPDGLAVD 461 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCC--CBCCSCC--CCCEECC
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceE--EEEeCCCCCcceEEEE
Confidence 45788888776655444333 3356789999877666555 445789999886411000000 0011111123344443
Q ss_pred --CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC--CCeEEEEECCCCeEEEEEecCCC
Q psy8748 1792 --DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV--DKSCKLWDFREKKCVQTFFGHEA 1867 (2004)
Q Consensus 1792 --dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~--DGsIrIWDlrs~k~I~tl~~h~s 1867 (2004)
.+..+++-...+.|.++++...... .+..........++++|.+.+|+.+.. .+.|..+++............-.
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~ 540 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 540 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence 3334455556788999998755433 333333345678899997665555543 26788887754322222222234
Q ss_pred CeEEEEEeCCCCEEE-EEECCCeEEEEEccCCceeEEEcC-CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1868 DVNSVCFHPSGLAFA-TGSEDKTARLFDIRADQQIATYLP-PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1868 ~ItsIafSPdg~~La-SgS~DGtIrIWDLrtgk~i~t~~~-~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
..+.|+|+|++..|+ +-+..+.|..+|+..... ..+.. .........+++..+ .++++....+.|..+|..+++.+
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEE
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCce
Confidence 567899998755544 444567899999874333 33322 111122334555443 34444455689999998888887
Q ss_pred EEEccCCCCeEEEEEc
Q psy8748 1946 GVLSGHENRVTSISLS 1961 (2004)
Q Consensus 1946 ~tL~gHs~~VtsLaFS 1961 (2004)
..+.......++|++.
T Consensus 619 ~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 619 NLLAENLLSPEDMVLF 634 (699)
T ss_dssp ECCCTTCSSCCCCCBC
T ss_pred EEeecCCCCCcEEEEe
Confidence 7765433344555443
No 301
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.99 E-value=0.048 Score=63.42 Aligned_cols=229 Identities=16% Similarity=0.208 Sum_probs=117.2
Q ss_pred CCEEEEEeCC----CeEEEEECCCCceEEEeeCCCCc-eEEEEEecCCCEEEEeecCC-----eEEEEEcCCCCCCCcce
Q psy8748 1704 SRHCVSGSLD----GKLIIWDTWTGNKTQVIPLRSAW-VMSVAFAQSGNFVACGGMDN-----MCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1704 G~~LASGS~D----GtIrVWDl~Tgk~l~ti~~Ht~~-ItsLafSPdg~~LaSGS~DG-----tIrVWDl~t~~~~~~~k 1773 (2004)
+..++.||.+ ..+.+||..+.+-...-...... -.+++. -++..++.|+.++ .+.+||..+.. ..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~----W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQ----WT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTE----EE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCc----ee
Confidence 3455556543 45888998877543321111111 112222 2677888887653 57788876542 22
Q ss_pred EEEEEecCccceeeeEEeCCCcEEEeecC-----CeEEEEECCCCceeEEeeccc-cCCeEEEEECCCCCEEEEEECC--
Q psy8748 1774 VIRELLGYEGFLSSCRFIDDTTLLTGSGD-----MKIVTWNLETGQRIHEVAQAH-IGDVVSISLSPDGQYFVTGSVD-- 1845 (2004)
Q Consensus 1774 ~i~sl~gh~~~Vssvafsdd~~LlSgS~D-----GtI~IWDl~tg~~i~~il~~h-~~~ItsLafSPdg~~LaSGS~D-- 1845 (2004)
......... .-.++...++..++.|+.+ ..+..||..+++......... .....++.+ +++.++.|+.+
T Consensus 91 ~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 167 (302)
T 2xn4_A 91 SVANMRDRR-STLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVA 167 (302)
T ss_dssp EECCCSSCC-BSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETT
T ss_pred eCCCCCccc-cceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCC
Confidence 222221111 1123333455566677655 358889988776442211111 111122222 56666666543
Q ss_pred -----CeEEEEECCCCeEEEE--EecCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEEccCCceeEEEcCCCCCCCe
Q psy8748 1846 -----KSCKLWDFREKKCVQT--FFGHEADVNSVCFHPSGLAFATGSED-----KTARLFDIRADQQIATYLPPNKNSGF 1913 (2004)
Q Consensus 1846 -----GsIrIWDlrs~k~I~t--l~~h~s~ItsIafSPdg~~LaSgS~D-----GtIrIWDLrtgk~i~t~~~~~~~s~I 1913 (2004)
..+.+||..+.+-... +....... +++. -++..++.|+.+ ..+.+||..+.+-...-..+......
T Consensus 168 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA 245 (302)
T ss_dssp TTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CCccccEEEEEeCCCCcEEECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC
Confidence 3588999887654322 11111111 2222 256777777764 36899999876543332222222222
Q ss_pred EEEEEcCCCCEEEEEeCCC-----eEEEEECCCCee
Q psy8748 1914 TSCAVSSSGRYIFCGSDDN-----NVHVWDLLKTTH 1944 (2004)
Q Consensus 1914 tsLafSPdG~~LaSGSsDG-----sIrIWDL~tge~ 1944 (2004)
..+.+ ++++++.|+.++ .+.+||..+.+-
T Consensus 246 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 246 GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 22222 677778877653 488999876643
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.95 E-value=0.25 Score=62.70 Aligned_cols=246 Identities=10% Similarity=0.106 Sum_probs=141.3
Q ss_pred ceeEEEEeC-CCCEEEEE-eCCCeEEEEECCCCceEEEeeCC---CCceEEEEE-------ecCCCEEEEeecCC-----
Q psy8748 1694 KVNSVHYSG-DSRHCVSG-SLDGKLIIWDTWTGNKTQVIPLR---SAWVMSVAF-------AQSGNFVACGGMDN----- 1756 (2004)
Q Consensus 1694 ~VtsLaFSP-DG~~LASG-S~DGtIrVWDl~Tgk~l~ti~~H---t~~ItsLaf-------SPdg~~LaSGS~DG----- 1756 (2004)
....|+|+| ++..|+.+ ...+.|++.|..++......... ......++| +++++.++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 567899998 34444444 44467999998887766555432 235899999 99999776665543
Q ss_pred --eEEEEEcCCCCCCCc-c--eEEEEEecCccceeeeEEeC-CCcEE-EeecCCeEEEEECC-------CCce-------
Q psy8748 1757 --MCTVYDLNNRDSTGA-A--KVIRELLGYEGFLSSCRFID-DTTLL-TGSGDMKIVTWNLE-------TGQR------- 1815 (2004)
Q Consensus 1757 --tIrVWDl~t~~~~~~-~--k~i~sl~gh~~~Vssvafsd-d~~Ll-SgS~DGtI~IWDl~-------tg~~------- 1815 (2004)
.|.+++......... . ...... .....++..+ ++.|+ +-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCCCCceeecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 255555332111110 1 222211 2234555555 44544 55577889999987 5543
Q ss_pred ----eEEee-ccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECC--CCeE--EEEEecC---C------------CCeE
Q psy8748 1816 ----IHEVA-QAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFR--EKKC--VQTFFGH---E------------ADVN 1870 (2004)
Q Consensus 1816 ----i~~il-~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlr--s~k~--I~tl~~h---~------------s~It 1870 (2004)
...+. .+.......++|+|+|++++++. ..+.|+.++.. .+.. ...+-+. . ....
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 11221 22234467999999999766654 55678886543 3321 0222221 1 1234
Q ss_pred -EEEEe-------CCCCEEEEEECCCeEEEEEccCCceeEEEcCC------------C----------CCCCeEEEEEcC
Q psy8748 1871 -SVCFH-------PSGLAFATGSEDKTARLFDIRADQQIATYLPP------------N----------KNSGFTSCAVSS 1920 (2004)
Q Consensus 1871 -sIafS-------Pdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~------------~----------~~s~ItsLafSP 1920 (2004)
.++.. +++.++++-..+.+|+.++ .++. +.++... + .-.....+++++
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 45554 4566666666778899998 3453 3333211 0 112356889998
Q ss_pred C-CCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1921 S-GRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1921 d-G~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
+ |.++++=..+..|+.+++......
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCEEEEEeCCCCEEEEEECCCCccc
Confidence 6 655555556778998887655444
No 303
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.94 E-value=0.067 Score=62.77 Aligned_cols=230 Identities=10% Similarity=0.065 Sum_probs=116.9
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecC-ccceeeeEEeCCCcEEEeec-----C------CeEEEEECCCCce
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY-EGFLSSCRFIDDTTLLTGSG-----D------MKIVTWNLETGQR 1815 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh-~~~Vssvafsdd~~LlSgS~-----D------GtI~IWDl~tg~~ 1815 (2004)
+++.|+ ..+..||..+.. ... ...... ...-.++...++..++.|+. . ..+..||..+++.
T Consensus 7 l~~~GG--~~~~~yd~~~~~----W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 79 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANE----CYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW 79 (315)
T ss_dssp EEEEET--TEEEEEETTTTE----EEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred EEEEcC--CceEEECCCCCe----Eec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence 344555 568889887653 221 222111 12222333345666667763 1 2378899988764
Q ss_pred eEEeecc-ccCCeEEEEECCCCCEEEEEECC--------CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC
Q psy8748 1816 IHEVAQA-HIGDVVSISLSPDGQYFVTGSVD--------KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE 1886 (2004)
Q Consensus 1816 i~~il~~-h~~~ItsLafSPdg~~LaSGS~D--------GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~ 1886 (2004)
....... .......+.+ ++..++.|+.+ ..+.+||..+.+-...-..........+..-+++.++.|+.
T Consensus 80 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 80 LGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp EECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred EECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 3211000 0111112222 56666677632 35899999876532211111111111122235667777775
Q ss_pred -C-----CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEEEccCC--C
Q psy8748 1887 -D-----KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN-----NVHVWDLLKTTHNGVLSGHE--N 1953 (2004)
Q Consensus 1887 -D-----GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDG-----sIrIWDL~tge~l~tL~gHs--~ 1953 (2004)
+ ..+.+||..+.+-...-..+........+.+ ++++++.|+.++ .+.+||..+.+-...-.... .
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 235 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS 235 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccc
Confidence 2 3589999887643322211222222233333 677778887654 58899987765433221111 1
Q ss_pred CeEEEEEcCCCCEEEEEECCC--------------eEEEEECCCCeEEEEEE
Q psy8748 1954 RVTSISLSPNGMALVTSSWDQ--------------FVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1954 ~VtsLaFSPDg~~LaSgS~DG--------------tIrIWdlstg~l~k~Ik 1991 (2004)
....+.+ ++++++.||.++ .|.+||+.+. .|..+.
T Consensus 236 ~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~-~W~~~~ 284 (315)
T 4asc_A 236 SLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK-KWEGVL 284 (315)
T ss_dssp SCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT-EEEEEE
T ss_pred ceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC-hhhhhc
Confidence 1222222 667777787642 4778999887 488773
No 304
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.92 E-value=1 Score=59.54 Aligned_cols=273 Identities=12% Similarity=0.047 Sum_probs=154.0
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
..|.++....+| .|..|+.+| +..||..+.+...........|.++.. .+| .+..|+.+ .+..++..+.. .
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~----~ 133 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRK----L 133 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCC----E
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCe----E
Confidence 468888877766 566666655 789998776433211112335777654 344 45556655 47788875432 1
Q ss_pred eEEEEE-e-cCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeecc----ccCCeEEEEECCCCCEEEEEECCC
Q psy8748 1773 KVIREL-L-GYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA----HIGDVVSISLSPDGQYFVTGSVDK 1846 (2004)
Q Consensus 1773 k~i~sl-~-gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~----h~~~ItsLafSPdg~~LaSGS~DG 1846 (2004)
...... . .....+.++....++.+.+|+.+ .+..+|..+++........ ....|.++....++..|.+|+. +
T Consensus 134 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~ 211 (758)
T 3ott_A 134 TSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-G 211 (758)
T ss_dssp EEECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-E
T ss_pred EEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-C
Confidence 111000 0 11234666666667778888765 5778888776543211111 1224888888877777777774 5
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC-----CCCCCeEEEEEcCC
Q psy8748 1847 SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP-----NKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~-----~~~s~ItsLafSPd 1921 (2004)
.+..+|..+++...........|.++....+|.+. .|+. +-+.+++..++......... -....|.++..+.+
T Consensus 212 Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~ 289 (758)
T 3ott_A 212 YLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE 289 (758)
T ss_dssp EEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT
T ss_pred CCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC
Confidence 68889987765432211123458888888777654 4554 45888887765443221111 12245888888888
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEEc-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1922 GRYIFCGSDDNNVHVWDLLKTTHNGVLS-----GHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1922 G~~LaSGSsDGsIrIWDL~tge~l~tL~-----gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
|.+. +|+..| +.++.....-...... .....|.++.-..+|.+.+. +.+| +..++..
T Consensus 290 g~lW-iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~ 351 (758)
T 3ott_A 290 HNIW-LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDP 351 (758)
T ss_dssp CCEE-EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCT
T ss_pred CCEE-EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccc
Confidence 8754 455667 5444322111111111 12346888888888875544 4454 5555544
No 305
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.88 E-value=0.062 Score=62.98 Aligned_cols=236 Identities=15% Similarity=0.164 Sum_probs=121.5
Q ss_pred CCCEEEEeecC----CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec----C-----CeEEEEECC
Q psy8748 1745 SGNFVACGGMD----NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG----D-----MKIVTWNLE 1811 (2004)
Q Consensus 1745 dg~~LaSGS~D----GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~----D-----GtI~IWDl~ 1811 (2004)
++..++.|+.+ ..+.+||..+.. ........... .-.++...++..++.|+. + ..+.+||..
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGT----WLRLADLQVPR-SGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTE----EEECCCCSSCC-BSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCe----EeECCCCCccc-ccceEEEECCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 45566666532 356777776532 11111111111 112233345555666665 2 468899998
Q ss_pred CCceeEEee-ccccCCeEEEEECCCCCEEEEEECC-----CeEEEEECCCCeEEEEE--ecCCCCeEEEEEeCCCCEEEE
Q psy8748 1812 TGQRIHEVA-QAHIGDVVSISLSPDGQYFVTGSVD-----KSCKLWDFREKKCVQTF--FGHEADVNSVCFHPSGLAFAT 1883 (2004)
Q Consensus 1812 tg~~i~~il-~~h~~~ItsLafSPdg~~LaSGS~D-----GsIrIWDlrs~k~I~tl--~~h~s~ItsIafSPdg~~LaS 1883 (2004)
+++...... .........+.+ +++.++.|+.+ ..+.+||..+.+-...- ......- +++.. ++..++.
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~ 174 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVL-NRLLYAV 174 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEE
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEE-CCEEEEE
Confidence 776432110 111111222223 56677776643 35889998876533221 1111111 22222 5667777
Q ss_pred EECC-----CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEE--EccC
Q psy8748 1884 GSED-----KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD-----NNVHVWDLLKTTHNGV--LSGH 1951 (2004)
Q Consensus 1884 gS~D-----GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD-----GsIrIWDL~tge~l~t--L~gH 1951 (2004)
|+.+ ..+.+||..+.+-...-..+........+.+ ++++++.|+.+ ..+.+||+.+.+-... +...
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC
Confidence 7654 4588999876654322211222222233333 67777777764 5699999877653322 1111
Q ss_pred CCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEEeec
Q psy8748 1952 ENRVTSISLSPNGMALVTSSWD-----QFVKVWQESNTIVWKVLKVYN 1994 (2004)
Q Consensus 1952 s~~VtsLaFSPDg~~LaSgS~D-----GtIrIWdlstg~l~k~Ik~~~ 1994 (2004)
......+.+ ++++++.||.+ ..+.+||..+. .|..+..+.
T Consensus 253 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p 297 (308)
T 1zgk_A 253 RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD-TWSEVTRMT 297 (308)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT-EEEEEEECS
T ss_pred ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC-EEeecCCCC
Confidence 111222222 67777888754 46889999887 488776554
No 306
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.87 E-value=0.44 Score=63.89 Aligned_cols=224 Identities=7% Similarity=-0.039 Sum_probs=133.6
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCc-EEEeecCCeEEEEECCCCc---eeEEeeccccCCeEEE
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTT-LLTGSGDMKIVTWNLETGQ---RIHEVAQAHIGDVVSI 1830 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~-LlSgS~DGtI~IWDl~tg~---~i~~il~~h~~~ItsL 1830 (2004)
..|+..++.... . ..+......+..+.+.. ++. +++-...+.|+.+++.... ....+..........|
T Consensus 404 ~~Ir~i~l~~~~----~---~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL 476 (791)
T 3m0c_C 404 HEVRKMTLDRSE----Y---TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 476 (791)
T ss_dssp SSEEEECTTSCC----C---EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred cceeEeeccCCc----c---eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee
Confidence 457776665431 1 11222344556777764 344 4455556889888887531 1223333344567789
Q ss_pred EECCCCCEEEEE-ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-C-CeEEEEEccCCceeEEEcCC
Q psy8748 1831 SLSPDGQYFVTG-SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE-D-KTARLFDIRADQQIATYLPP 1907 (2004)
Q Consensus 1831 afSPdg~~LaSG-S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~-D-GtIrIWDLrtgk~i~t~~~~ 1907 (2004)
++++.++.|+.+ ...+.|.+.++........+...-.....|++.|.+.+|+.+.. . +.|...++..... ..+..
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~- 554 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVT- 554 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEEC-
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEe-
Confidence 999877655555 45678999998765543334344456889999997666655543 2 6899999874433 33322
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEcc--CCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCC
Q psy8748 1908 NKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTTHNGVLSG--HENRVTSISLSPNGMALVTS-SWDQFVKVWQESN 1983 (2004)
Q Consensus 1908 ~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge~l~tL~g--Hs~~VtsLaFSPDg~~LaSg-S~DGtIrIWdlst 1983 (2004)
........+++++.+..|+.+.. .+.|..+++........+.. .-....+|++.. ..|+.+ ...+.|...+..+
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEEEEeCCC
Confidence 22356789999987777776654 57899999855444333332 223456777643 345444 4567888888766
Q ss_pred CeEEEEE
Q psy8748 1984 TIVWKVL 1990 (2004)
Q Consensus 1984 g~l~k~I 1990 (2004)
|.....+
T Consensus 633 G~~~~~l 639 (791)
T 3m0c_C 633 GSDVNLL 639 (791)
T ss_dssp CCCCEEE
T ss_pred CcceEEe
Confidence 6544444
No 307
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.85 E-value=0.14 Score=62.20 Aligned_cols=193 Identities=13% Similarity=0.225 Sum_probs=121.3
Q ss_pred CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-----CC---cEEEee-c--CCeEEEEECC--C
Q psy8748 1746 GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-----DT---TLLTGS-G--DMKIVTWNLE--T 1812 (2004)
Q Consensus 1746 g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-----d~---~LlSgS-~--DGtI~IWDl~--t 1812 (2004)
...++.....+.+.+||+.. +.+..+.. +.+..+...+ +. .+++.. . +++|.+|++. +
T Consensus 40 ~s~ii~t~k~~gL~Vydl~G-------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~ 110 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLDG-------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN 110 (355)
T ss_dssp GCEEEEEETTTEEEEEETTS-------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT
T ss_pred ccEEEEEcCCCCEEEEcCCC-------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC
Confidence 45666666778899999943 33333332 2333333322 11 223333 3 5789999763 4
Q ss_pred CceeEEeec-----ccc-CCeEEEEE--CCC-CC-EEEEEECCCeEEEEECC-------CCeEEEEEecCCCCeEEEEEe
Q psy8748 1813 GQRIHEVAQ-----AHI-GDVVSISL--SPD-GQ-YFVTGSVDKSCKLWDFR-------EKKCVQTFFGHEADVNSVCFH 1875 (2004)
Q Consensus 1813 g~~i~~il~-----~h~-~~ItsLaf--SPd-g~-~LaSGS~DGsIrIWDlr-------s~k~I~tl~~h~s~ItsIafS 1875 (2004)
+. +..+.. ... ..+..+|+ ++. +. ++++...+|.+..|++. +.+.++++.- .+.+..+...
T Consensus 111 ~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvD 188 (355)
T 3amr_A 111 GT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAAD 188 (355)
T ss_dssp CC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEE
T ss_pred Cc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEc
Confidence 43 323311 011 55667777 774 43 68888899999999883 3355666643 5678899999
Q ss_pred CCCCEEEEEECCCeEEEEEcc-----CCceeEEEcCCCCCCCeEEEEE--cCCCC-EEEEEe-CCCeEEEEECC-CCeee
Q psy8748 1876 PSGLAFATGSEDKTARLFDIR-----ADQQIATYLPPNKNSGFTSCAV--SSSGR-YIFCGS-DDNNVHVWDLL-KTTHN 1945 (2004)
Q Consensus 1876 Pdg~~LaSgS~DGtIrIWDLr-----tgk~i~t~~~~~~~s~ItsLaf--SPdG~-~LaSGS-sDGsIrIWDL~-tge~l 1945 (2004)
+....|+.+-++..|..++.+ +++.+..+........+..+++ .++|+ ||++++ .++++.+||.. +.+.+
T Consensus 189 d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 189 DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 988899999998777777754 2344544433333346777877 45666 677666 57799999996 67777
Q ss_pred EEEc
Q psy8748 1946 GVLS 1949 (2004)
Q Consensus 1946 ~tL~ 1949 (2004)
..+.
T Consensus 269 g~f~ 272 (355)
T 3amr_A 269 ADFR 272 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7763
No 308
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.85 E-value=0.087 Score=61.40 Aligned_cols=227 Identities=11% Similarity=0.054 Sum_probs=118.0
Q ss_pred CEEEEEeC--CCeEEEEECCCCceEEEe--eCCCCceEEEEEecCCCEEEEeecC----CeEEEEEcCCCCCCCcceEEE
Q psy8748 1705 RHCVSGSL--DGKLIIWDTWTGNKTQVI--PLRSAWVMSVAFAQSGNFVACGGMD----NMCTVYDLNNRDSTGAAKVIR 1776 (2004)
Q Consensus 1705 ~~LASGS~--DGtIrVWDl~Tgk~l~ti--~~Ht~~ItsLafSPdg~~LaSGS~D----GtIrVWDl~t~~~~~~~k~i~ 1776 (2004)
..++.||. ...+.+||..+++-...- ......-..+. -++..++.|+.+ ..+.+||..+.. .....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~----W~~~~ 86 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDS----WYSKL 86 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTE----EEEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCe----EEECC
Confidence 34555654 357889998877544321 11111112222 367778888765 567888876542 22222
Q ss_pred EEecCccceeeeEEeCCCcEEEeecC------CeEEEEECCCCceeEEeecc-ccCCeEEEEECCCCCEEEEEEC-----
Q psy8748 1777 ELLGYEGFLSSCRFIDDTTLLTGSGD------MKIVTWNLETGQRIHEVAQA-HIGDVVSISLSPDGQYFVTGSV----- 1844 (2004)
Q Consensus 1777 sl~gh~~~Vssvafsdd~~LlSgS~D------GtI~IWDl~tg~~i~~il~~-h~~~ItsLafSPdg~~LaSGS~----- 1844 (2004)
....... -.++...++..++.|+.+ ..+.+||..+++....-... .......+.+ +++.++.|+.
T Consensus 87 ~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 87 GPPTPRD-SLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNV 163 (306)
T ss_dssp CCSSCCB-SCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTT
T ss_pred CCCcccc-ceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCC
Confidence 2221111 222333455566677654 46899999887643221111 1111122222 5666666653
Q ss_pred ----CCeEEEEECCCCeEEEEEecCCCC-eEEEEEeCCCCEEEEEECC-----CeEEEEEccCCceeEEEcCCCCCCCeE
Q psy8748 1845 ----DKSCKLWDFREKKCVQTFFGHEAD-VNSVCFHPSGLAFATGSED-----KTARLFDIRADQQIATYLPPNKNSGFT 1914 (2004)
Q Consensus 1845 ----DGsIrIWDlrs~k~I~tl~~h~s~-ItsIafSPdg~~LaSgS~D-----GtIrIWDLrtgk~i~t~~~~~~~s~It 1914 (2004)
-..+.+||..+.+-...-...... -.+++.. +++.++.|+.+ ..+.+||..+.+-...-..+.......
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 242 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK 242 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCE
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcccee
Confidence 345889999877533221111111 1122222 56677776653 358899988765332221122222233
Q ss_pred EEEEcCCCCEEEEEeCC-----CeEEEEECCCCe
Q psy8748 1915 SCAVSSSGRYIFCGSDD-----NNVHVWDLLKTT 1943 (2004)
Q Consensus 1915 sLafSPdG~~LaSGSsD-----GsIrIWDL~tge 1943 (2004)
++.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 243 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 243 CAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 3333 67788888754 568899987754
No 309
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.78 E-value=0.13 Score=65.34 Aligned_cols=241 Identities=11% Similarity=0.069 Sum_probs=137.9
Q ss_pred ceEEEEEec-CCCEEEEe-ecCCeEEEEEcCCCCCCCcceEEEEEec----CccceeeeEE-------eCCC-cEEEeec
Q psy8748 1736 WVMSVAFAQ-SGNFVACG-GMDNMCTVYDLNNRDSTGAAKVIRELLG----YEGFLSSCRF-------IDDT-TLLTGSG 1801 (2004)
Q Consensus 1736 ~ItsLafSP-dg~~LaSG-S~DGtIrVWDl~t~~~~~~~k~i~sl~g----h~~~Vssvaf-------sdd~-~LlSgS~ 1801 (2004)
....|+|+| ++..|+++ ...+.|++.|...+. +..+.. .......++| ..++ .++++..
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~ 212 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAID 212 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEEC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-------EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeC
Confidence 467899998 34444444 444678888876532 222211 1224677888 6544 4666655
Q ss_pred CC-------eEEEEECCC-CceeE----EeeccccCCeEEEEECCCC-CEEEEEECCCeEEEEECC-------CCeE---
Q psy8748 1802 DM-------KIVTWNLET-GQRIH----EVAQAHIGDVVSISLSPDG-QYFVTGSVDKSCKLWDFR-------EKKC--- 1858 (2004)
Q Consensus 1802 DG-------tI~IWDl~t-g~~i~----~il~~h~~~ItsLafSPdg-~~LaSGS~DGsIrIWDlr-------s~k~--- 1858 (2004)
.+ .|.+++... +.... ..... ......++++|++ .++++-..++.|..+|+. ++..
T Consensus 213 ~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 213 YDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp CCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 43 366776444 22210 11111 2234578899954 445555577889999987 4442
Q ss_pred --------EEE-E-ecCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEEccC--Cce--eEEEcCC----CC---------C
Q psy8748 1859 --------VQT-F-FGHEADVNSVCFHPSGLAFATG-SEDKTARLFDIRA--DQQ--IATYLPP----NK---------N 1910 (2004)
Q Consensus 1859 --------I~t-l-~~h~s~ItsIafSPdg~~LaSg-S~DGtIrIWDLrt--gk~--i~t~~~~----~~---------~ 1910 (2004)
... + .+.......++|+|+|++++.+ +....|+.++... +.. ...+... +. -
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 112 1 1233456899999999965554 4567898876543 221 0122110 00 0
Q ss_pred CCeE-EEEEc-------CCCCEEEEEeCCCeEEEEECCCCeeeEEEccC------------------------CCCeEEE
Q psy8748 1911 SGFT-SCAVS-------SSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH------------------------ENRVTSI 1958 (2004)
Q Consensus 1911 s~It-sLafS-------PdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH------------------------s~~VtsL 1958 (2004)
.... .++.. .+|.++++=..+++|+.++ .++. +.++.+. -....+|
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 1233 44554 4566666666778999998 4664 3344221 1236789
Q ss_pred EEcCC-CCEEEEEECCCeEEEEECCCCeE
Q psy8748 1959 SLSPN-GMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1959 aFSPD-g~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
+++++ |.+.++=...+.|+.++++....
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 99987 66555556678899999887643
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.75 E-value=0.14 Score=61.68 Aligned_cols=204 Identities=10% Similarity=0.090 Sum_probs=131.5
Q ss_pred EecCccceeeeEEeC-CCcEEEee-cCCeEEEEECCCCceeEEeecc----c--cCCeEEEEE---CCCCCEEEEEEC--
Q psy8748 1778 LLGYEGFLSSCRFID-DTTLLTGS-GDMKIVTWNLETGQRIHEVAQA----H--IGDVVSISL---SPDGQYFVTGSV-- 1844 (2004)
Q Consensus 1778 l~gh~~~Vssvafsd-d~~LlSgS-~DGtI~IWDl~tg~~i~~il~~----h--~~~ItsLaf---SPdg~~LaSGS~-- 1844 (2004)
+........+..|.. ++.++.++ ..|.|..||...+......... . ...+..+.| .|+++++++...
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 334455566788874 55666666 7899999999866543232221 1 113578999 688777775442
Q ss_pred -----------CCeEEEEECC---CCeEEEEEe--c-----------CCCCeEEEEEeCCCCEEEEEECC-CeEEEEEcc
Q psy8748 1845 -----------DKSCKLWDFR---EKKCVQTFF--G-----------HEADVNSVCFHPSGLAFATGSED-KTARLFDIR 1896 (2004)
Q Consensus 1845 -----------DGsIrIWDlr---s~k~I~tl~--~-----------h~s~ItsIafSPdg~~LaSgS~D-GtIrIWDLr 1896 (2004)
++.+..||+. +++.+.... . .......++..++|+..++++.. +.|..++..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 6789999998 776655443 1 11247899999999999999988 888888766
Q ss_pred CCceeEEE--cC--CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee--eEEEc--cC---CCCeEEE-EEcCCC
Q psy8748 1897 ADQQIATY--LP--PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTH--NGVLS--GH---ENRVTSI-SLSPNG 1964 (2004)
Q Consensus 1897 tgk~i~t~--~~--~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~--l~tL~--gH---s~~VtsL-aFSPDg 1964 (2004)
.. ....+ .. .......+.++++|+|+.|++....|.+..+|+.+... +. .. +. -.....+ ..-.+|
T Consensus 168 G~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 168 GK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp SC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETT
T ss_pred CC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCC
Confidence 43 33222 11 12234467899999999999888899999999875332 21 11 22 1223443 333477
Q ss_pred CE-EEEEECCCeEEEEECCC
Q psy8748 1965 MA-LVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1965 ~~-LaSgS~DGtIrIWdlst 1983 (2004)
+. +++.+..+.+.+.+.++
T Consensus 246 ~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEEEETTEEEEEECSST
T ss_pred EEEEEEcCCCCEEEEECCCC
Confidence 77 55556666666665544
No 311
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.72 E-value=1.3 Score=58.45 Aligned_cols=279 Identities=12% Similarity=0.053 Sum_probs=160.0
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcce
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k 1773 (2004)
.|.++...+++..|..|+. +-+..+|..+++...........|.++....+|.+.+. +.+| +.+++..+.. ..
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~G-l~~~~~~~~~----~~ 264 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDNG-LYVYHNDTTP----LQ 264 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETTE-EEEECCTTSC----CE
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCCc-eeEEecCCCc----EE
Confidence 4888988887776555654 45888998776543322222345888888777776654 4444 7777765432 11
Q ss_pred EEEEEe-----cCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEee----ccccCCeEEEEECCCCCEEEEEEC
Q psy8748 1774 VIRELL-----GYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVA----QAHIGDVVSISLSPDGQYFVTGSV 1844 (2004)
Q Consensus 1774 ~i~sl~-----gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il----~~h~~~ItsLafSPdg~~LaSGS~ 1844 (2004)
...... -....|.++....++.+.+|+..| +.++.....-...... ......|.++....+|+ +.+|+.
T Consensus 265 ~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~-lWiGt~ 342 (758)
T 3ott_A 265 HIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGF-YWFGGA 342 (758)
T ss_dssp EECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCC-EEEEET
T ss_pred EEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCC-EEEeeC
Confidence 111000 112346666666677788888777 5544332211110100 01134688888887776 555665
Q ss_pred CCeEEEEECCCCe--EEEEEec-------CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEc-CCC---CCC
Q psy8748 1845 DKSCKLWDFREKK--CVQTFFG-------HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL-PPN---KNS 1911 (2004)
Q Consensus 1845 DGsIrIWDlrs~k--~I~tl~~-------h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~-~~~---~~s 1911 (2004)
+ -+..++..++. ....+.. ....|.++.-..+|+. ..|+ ++-+..||..+++...... ... ...
T Consensus 343 ~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (758)
T 3ott_A 343 N-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQL-WIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTN 419 (758)
T ss_dssp T-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCE-EEEE-TTEEEEEETTTTEEEEEEEECCC--CBSS
T ss_pred C-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCE-EEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCc
Confidence 5 46667655431 1222211 1235888888777764 4565 4579999988765433211 111 124
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----Ceee---EEEc---c-CCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1912 GFTSCAVSSSGRYIFCGSDDNNVHVWDLLK-----TTHN---GVLS---G-HENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1912 ~ItsLafSPdG~~LaSGSsDGsIrIWDL~t-----ge~l---~tL~---g-Hs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
.|.++..+.+|+ |.+|+..+-+..+|..+ .... ..+. + ....|.++...++|.+.+.++..+-|..|
T Consensus 420 ~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~ 498 (758)
T 3ott_A 420 WTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKI 498 (758)
T ss_dssp SEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEE
T ss_pred eEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEE
Confidence 577888777766 45566666688888542 1111 1111 1 12358999999999877644444558888
Q ss_pred ECCCCe
Q psy8748 1980 QESNTI 1985 (2004)
Q Consensus 1980 dlstg~ 1985 (2004)
+..++.
T Consensus 499 d~~~~~ 504 (758)
T 3ott_A 499 NPRTRE 504 (758)
T ss_dssp ETTTTE
T ss_pred eCCCCc
Confidence 987764
No 312
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.71 E-value=0.045 Score=65.25 Aligned_cols=241 Identities=15% Similarity=0.065 Sum_probs=115.1
Q ss_pred CCCEEEEeecC-CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec-C---------CeEEEEECCCC
Q psy8748 1745 SGNFVACGGMD-NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG-D---------MKIVTWNLETG 1813 (2004)
Q Consensus 1745 dg~~LaSGS~D-GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~-D---------GtI~IWDl~tg 1813 (2004)
++..++.|+.+ ..+.+||..... ...............-.+++..++..++.|+. + ..+..||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~--~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKD--KKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSS--CCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCC--CCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666666644 457777775311 12222222221111222333445556666665 2 46899999887
Q ss_pred ceeEEeecc-ccCCeEEEEECCCCCEEEEEECC---------------------------------------CeEEEEEC
Q psy8748 1814 QRIHEVAQA-HIGDVVSISLSPDGQYFVTGSVD---------------------------------------KSCKLWDF 1853 (2004)
Q Consensus 1814 ~~i~~il~~-h~~~ItsLafSPdg~~LaSGS~D---------------------------------------GsIrIWDl 1853 (2004)
+........ ....-.+++. .+++.++.|+.+ ..+.+||.
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred cEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 644221111 1111122222 467777888754 57999998
Q ss_pred CCCeEEEE--EecCCCCeEEEEEeCCCCEEEEEEC------CCeEEEEEccCCceeEEEcCC--CCCCCeEEEEEcCCCC
Q psy8748 1854 REKKCVQT--FFGHEADVNSVCFHPSGLAFATGSE------DKTARLFDIRADQQIATYLPP--NKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1854 rs~k~I~t--l~~h~s~ItsIafSPdg~~LaSgS~------DGtIrIWDLrtgk~i~t~~~~--~~~s~ItsLafSPdG~ 1923 (2004)
.+.+-... +......-.+++.. ++..++.|+. ...+.+||+............ .........+...+++
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 254 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDS 254 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTE
T ss_pred CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCE
Confidence 87653322 21111111233332 5566666653 345777887222222222111 1111111112233567
Q ss_pred EEEEEeCC----------------------CeEEEEECCCCe--eeEEEccCCCCeEEEEEcCCCCEEEEEECCC-----
Q psy8748 1924 YIFCGSDD----------------------NNVHVWDLLKTT--HNGVLSGHENRVTSISLSPNGMALVTSSWDQ----- 1974 (2004)
Q Consensus 1924 ~LaSGSsD----------------------GsIrIWDL~tge--~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DG----- 1974 (2004)
+++.|+.+ ..+.+||..+.+ .+..+......-.++ .-++++++.||.++
T Consensus 255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~ 332 (357)
T 2uvk_A 255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGKAV 332 (357)
T ss_dssp EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGCEE
T ss_pred EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCCEe
Confidence 77777632 257889987543 333332222222222 34778888888653
Q ss_pred -eEEEEECCCCeEEEEEE
Q psy8748 1975 -FVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1975 -tIrIWdlstg~l~k~Ik 1991 (2004)
.|.++++++++..+...
T Consensus 333 ~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 333 TDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EEEEEEEC-CCSCEEEC-
T ss_pred eeEEEEEEcCcEeEeeec
Confidence 46667888887555444
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.69 E-value=0.5 Score=57.18 Aligned_cols=233 Identities=15% Similarity=0.116 Sum_probs=126.7
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc-eEEEee---CCCCceEEEEEecC---CCEEEEeec----C----C
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN-KTQVIP---LRSAWVMSVAFAQS---GNFVACGGM----D----N 1756 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk-~l~ti~---~Ht~~ItsLafSPd---g~~LaSGS~----D----G 1756 (2004)
-.....++|.|+|++++ +..+|.|++++ .+++ .+..+. ........|+|+|+ +..|.++.. + +
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34678999999998555 45669999997 4555 222211 12345889999997 444444432 3 5
Q ss_pred eEEEEEcCCCCCC-CcceEE-EEEec-CccceeeeEEeCCCcEEEeecC--------------CeEEEEECCCCc-----
Q psy8748 1757 MCTVYDLNNRDST-GAAKVI-RELLG-YEGFLSSCRFIDDTTLLTGSGD--------------MKIVTWNLETGQ----- 1814 (2004)
Q Consensus 1757 tIrVWDl~t~~~~-~~~k~i-~sl~g-h~~~Vssvafsdd~~LlSgS~D--------------GtI~IWDl~tg~----- 1814 (2004)
.|..|+....... ...+.+ ..+.. .......+.|.+++.|+++..+ |.|..++.+..-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777776543100 011111 11221 1223456788777776665432 566666654320
Q ss_pred --eeEEeeccccCCeEEEEECC-CCCEEEEEECCC----eEEEEECCC--------C--------eEEEEEecCCCCeEE
Q psy8748 1815 --RIHEVAQAHIGDVVSISLSP-DGQYFVTGSVDK----SCKLWDFRE--------K--------KCVQTFFGHEADVNS 1871 (2004)
Q Consensus 1815 --~i~~il~~h~~~ItsLafSP-dg~~LaSGS~DG----sIrIWDlrs--------~--------k~I~tl~~h~s~Its 1871 (2004)
.......++ .....++|+| +++ |+++.... .|.+..... + .++..+.........
T Consensus 186 f~~~~i~a~G~-rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 186 FPNSPIWSYGH-RNPQGIDWHRASGV-MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp STTCCEEEECC-SCCCEEEECTTTCC-EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCCcEEEEcc-CCcceEEEeCCCCC-EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 011112233 2356799999 555 44443322 243332110 0 122222112345678
Q ss_pred EEEe-------CCCCEEEEEECCCeEEEEEccCC-cee--EEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1872 VCFH-------PSGLAFATGSEDKTARLFDIRAD-QQI--ATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1872 IafS-------Pdg~~LaSgS~DGtIrIWDLrtg-k~i--~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
++|. .+|.++++....+.|...++... +.. ..+. ......+..+++.|||.+.++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence 8884 46767776666788999988753 222 2332 22245688999999997666654
No 314
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.64 E-value=0.03 Score=67.49 Aligned_cols=158 Identities=9% Similarity=0.107 Sum_probs=112.1
Q ss_pred CeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEEEEecC-----C--CCeEEEEE---eCCCCEEEEEE---------
Q psy8748 1826 DVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKCVQTFFGH-----E--ADVNSVCF---HPSGLAFATGS--------- 1885 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~h-----~--s~ItsIaf---SPdg~~LaSgS--------- 1885 (2004)
...+++|++....|+.++ ..|.|..||...+......... . ..+.++.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 345788988777777777 6899999998765443332221 1 13579999 68877777543
Q ss_pred ----CCCeEEEEEcc---CCceeEEEcCCC-----------CCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCeeeE
Q psy8748 1886 ----EDKTARLFDIR---ADQQIATYLPPN-----------KNSGFTSCAVSSSGRYIFCGSDD-NNVHVWDLLKTTHNG 1946 (2004)
Q Consensus 1886 ----~DGtIrIWDLr---tgk~i~t~~~~~-----------~~s~ItsLafSPdG~~LaSGSsD-GsIrIWDL~tge~l~ 1946 (2004)
.+..|..||+. +++......... .......++..++|+..++++.. +.|..++... +...
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~~~ 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KTVS 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CCEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CEEe
Confidence 26779999999 787776653221 11347899999999999999888 8887777543 3333
Q ss_pred EEc------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1947 VLS------GHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1947 tL~------gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
.+. ......+.|+++|+|..|++...+|.+..+|+...
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 221 11223679999999999988877999999998754
No 315
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.58 E-value=1.1 Score=58.41 Aligned_cols=231 Identities=7% Similarity=-0.016 Sum_probs=141.3
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEeeC-CCCceEEEEEecCCCEEE-EeecCCeEEEEEcCCCCCCCcceEEEEEecCcc
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQVIPL-RSAWVMSVAFAQSGNFVA-CGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG 1783 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~ti~~-Ht~~ItsLafSPdg~~La-SGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~ 1783 (2004)
+|+.+ ..+.|+..++.+......+.. .-..+.+++|++.+..++ +-..++.|..++++... ... .......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~----~~~--v~~~g~~ 80 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA----LEH--VVEFGLD 80 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEE--EECSSCS
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC----cEE--EEeCCCC
Confidence 44444 456899999987655444332 234678999998665554 44567889888886432 111 1111223
Q ss_pred ceeeeEEe--CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC--CCeEEEEECCCCeEE
Q psy8748 1784 FLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV--DKSCKLWDFREKKCV 1859 (2004)
Q Consensus 1784 ~Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~--DGsIrIWDlrs~k~I 1859 (2004)
....+++. .++.+++-...+.|.+.+++..... .+..........++++|....|+.... .+.|...++......
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~-~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ-VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE-EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE-EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 44556654 3344555556788999998755432 233344456789999997666666653 467888887654432
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1860 QTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1860 ~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
.+...-.....+++++++..|+.+. ..+.|..+|+..... ..+. ........+++.. ++.+++-...+.|...|
T Consensus 160 -~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~--~~l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 160 -TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA--DDLPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp -EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE--ECCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred -EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee--ccCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 2223455788999999766666554 467899999875444 2221 1123345677764 34444444578899999
Q ss_pred CCCCeeeEEEc
Q psy8748 1939 LLKTTHNGVLS 1949 (2004)
Q Consensus 1939 L~tge~l~tL~ 1949 (2004)
..+++....+.
T Consensus 235 k~tg~~~~~l~ 245 (628)
T 4a0p_A 235 KTSGQNRTIIQ 245 (628)
T ss_dssp TTTCCSCEEEE
T ss_pred CCCCCceEEEe
Confidence 87776554443
No 316
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.54 E-value=0.11 Score=60.70 Aligned_cols=230 Identities=14% Similarity=0.137 Sum_probs=117.6
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCCceEEEe--eCCCCceEEEEEecCCCEEEEeec----C-----CeEEEEEcCCC
Q psy8748 1702 GDSRHCVSGSLD----GKLIIWDTWTGNKTQVI--PLRSAWVMSVAFAQSGNFVACGGM----D-----NMCTVYDLNNR 1766 (2004)
Q Consensus 1702 PDG~~LASGS~D----GtIrVWDl~Tgk~l~ti--~~Ht~~ItsLafSPdg~~LaSGS~----D-----GtIrVWDl~t~ 1766 (2004)
-++..++.||.+ ..+.+||..+++-...- ...... .+++. .++..++.|+. + ..+.+||..+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 355666777642 46889998777543321 111111 12222 26777777776 2 35778887654
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC-----CeEEEEECCCCceeEEee-ccccCCeEEEEECCCCCEEE
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD-----MKIVTWNLETGQRIHEVA-QAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D-----GtI~IWDl~tg~~i~~il-~~h~~~ItsLafSPdg~~La 1840 (2004)
. ............. .++...++..++.|+.+ ..+..||..+++...... ......-.++.+ ++..++
T Consensus 101 ~----W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv 173 (308)
T 1zgk_A 101 Q----WSPCAPMSVPRNR-IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYA 173 (308)
T ss_dssp E----EEECCCCSSCCBT-CEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred e----EeECCCCCcCccc-cEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEE
Confidence 2 1211111111111 22333355556666543 468899998776432111 111111222223 567777
Q ss_pred EEECC-----CeEEEEECCCCeEEEEE--ecCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEEccCCceeEEEcCCC
Q psy8748 1841 TGSVD-----KSCKLWDFREKKCVQTF--FGHEADVNSVCFHPSGLAFATGSED-----KTARLFDIRADQQIATYLPPN 1908 (2004)
Q Consensus 1841 SGS~D-----GsIrIWDlrs~k~I~tl--~~h~s~ItsIafSPdg~~LaSgS~D-----GtIrIWDLrtgk~i~t~~~~~ 1908 (2004)
.|+.+ ..+.+||..+.+-...- ....... +++.. ++..++.|+.+ ..+.+||+.+.+-...-..+.
T Consensus 174 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 251 (308)
T 1zgk_A 174 VGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH 251 (308)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred EeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC
Confidence 77654 45899998876532211 1111112 22222 66677777764 459999988765432221122
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCee
Q psy8748 1909 KNSGFTSCAVSSSGRYIFCGSDD-----NNVHVWDLLKTTH 1944 (2004)
Q Consensus 1909 ~~s~ItsLafSPdG~~LaSGSsD-----GsIrIWDL~tge~ 1944 (2004)
.......+.+ ++++++.|+.+ ..+.+||..+.+-
T Consensus 252 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 252 RRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp CCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 2222223332 67777777754 4578888876543
No 317
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.49 E-value=0.23 Score=58.21 Aligned_cols=228 Identities=11% Similarity=0.114 Sum_probs=114.1
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEec-CccceeeeEEeCCCcEEEeec----CC-------eEEEEECCCCce
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLG-YEGFLSSCRFIDDTTLLTGSG----DM-------KIVTWNLETGQR 1815 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~g-h~~~Vssvafsdd~~LlSgS~----DG-------tI~IWDl~tg~~ 1815 (2004)
.++.|+. .+..||..+.. ... ..... ....-.++...++..++.|+. ++ .+..||..+++.
T Consensus 18 i~~~GG~--~~~~yd~~~~~----W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 90 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENE----CYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW 90 (318)
T ss_dssp EEEECSS--EEEEEETTTTE----EEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred hhhcccc--ceEEECCCCCc----eec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence 4444543 37788876542 111 11111 112223334445556666762 12 277889887764
Q ss_pred eEEee-ccccCCeEEEEECCCCCEEEEEECC-------CeEEEEECCCCeEEEEEecCCCCe-EEEEEeCCCCEEEEEEC
Q psy8748 1816 IHEVA-QAHIGDVVSISLSPDGQYFVTGSVD-------KSCKLWDFREKKCVQTFFGHEADV-NSVCFHPSGLAFATGSE 1886 (2004)
Q Consensus 1816 i~~il-~~h~~~ItsLafSPdg~~LaSGS~D-------GsIrIWDlrs~k~I~tl~~h~s~I-tsIafSPdg~~LaSgS~ 1886 (2004)
..... ...........+ ++..++.|+.+ ..+.+||..+.+-...-....... .+++. .++..++.|+.
T Consensus 91 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~ 167 (318)
T 2woz_A 91 VGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGK 167 (318)
T ss_dssp EECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCE
T ss_pred EECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCC
Confidence 32110 111111222222 56777777754 258889988765432211111111 12222 46666666664
Q ss_pred ------CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEE--EccCCC
Q psy8748 1887 ------DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD-----NNVHVWDLLKTTHNGV--LSGHEN 1953 (2004)
Q Consensus 1887 ------DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD-----GsIrIWDL~tge~l~t--L~gHs~ 1953 (2004)
-..+.+||..+.+-...-..+........+.+ ++++++.|+.+ ..+.+||..+.+-... +.....
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 245 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERS 245 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCB
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCccc
Confidence 23589999987654333222222222233332 56777777653 3577899876543221 111111
Q ss_pred CeEEEEEcCCCCEEEEEECC--------------CeEEEEECCCCeEEEEE
Q psy8748 1954 RVTSISLSPNGMALVTSSWD--------------QFVKVWQESNTIVWKVL 1990 (2004)
Q Consensus 1954 ~VtsLaFSPDg~~LaSgS~D--------------GtIrIWdlstg~l~k~I 1990 (2004)
....+. -++.+++.||.+ ..+.+||..+. .|..+
T Consensus 246 ~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~-~W~~~ 293 (318)
T 2woz_A 246 SISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK-EWAGM 293 (318)
T ss_dssp SCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT-EEEEE
T ss_pred ceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC-Eehhh
Confidence 112222 256777777754 35889999887 48776
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.31 E-value=0.32 Score=57.00 Aligned_cols=229 Identities=8% Similarity=0.050 Sum_probs=115.5
Q ss_pred EEEEEeCCCeEEEEECCCCceEE-EeeCCCCceEEEEEecCCCEEEEeec----C-------CeEEEEEcCCCCCCCcce
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQ-VIPLRSAWVMSVAFAQSGNFVACGGM----D-------NMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~-ti~~Ht~~ItsLafSPdg~~LaSGS~----D-------GtIrVWDl~t~~~~~~~k 1773 (2004)
+++.|+ ..+.+||..+++-.. ............+...++..++.|+. + ..+.+||..+.. ..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~----W~ 80 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE----WL 80 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE----EE
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe----EE
Confidence 344555 579999998887543 12211122233333457788888874 1 126677776532 11
Q ss_pred EEEEEecCccceeeeEEeCCCcEEEeecC--------CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC-
Q psy8748 1774 VIRELLGYEGFLSSCRFIDDTTLLTGSGD--------MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV- 1844 (2004)
Q Consensus 1774 ~i~sl~gh~~~Vssvafsdd~~LlSgS~D--------GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~- 1844 (2004)
....... ...-.++...++..++.|+.+ ..+.+||..+++............-.+++. .+++.++.|+.
T Consensus 81 ~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 158 (315)
T 4asc_A 81 GMPPLPS-PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKG 158 (315)
T ss_dssp ECCCBSS-CEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred ECCCCCc-chhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCC
Confidence 1111111 111122333355556666632 458999998875432111011111112222 35667777775
Q ss_pred C-----CeEEEEECCCCeEEEEEecCCCC-eEEEEEeCCCCEEEEEECCC-----eEEEEEccCCceeEEEcCCCCCCCe
Q psy8748 1845 D-----KSCKLWDFREKKCVQTFFGHEAD-VNSVCFHPSGLAFATGSEDK-----TARLFDIRADQQIATYLPPNKNSGF 1913 (2004)
Q Consensus 1845 D-----GsIrIWDlrs~k~I~tl~~h~s~-ItsIafSPdg~~LaSgS~DG-----tIrIWDLrtgk~i~t~~~~~~~s~I 1913 (2004)
+ ..+.+||..+.+-...-...... -.+++. -+++.++.|+.++ .+.+||..+.+-...-..+......
T Consensus 159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 237 (315)
T 4asc_A 159 SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL 237 (315)
T ss_dssp TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 2 36899998876532211111111 112222 2667777777654 4888998876544332222222222
Q ss_pred EEEEEcCCCCEEEEEeCCC--------------eEEEEECCCCeee
Q psy8748 1914 TSCAVSSSGRYIFCGSDDN--------------NVHVWDLLKTTHN 1945 (2004)
Q Consensus 1914 tsLafSPdG~~LaSGSsDG--------------sIrIWDL~tge~l 1945 (2004)
..+.+ ++++++.|+.++ .+.+||..+.+-.
T Consensus 238 ~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 238 SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 33333 567777777532 4778888766443
No 319
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.26 E-value=0.39 Score=57.93 Aligned_cols=224 Identities=14% Similarity=0.131 Sum_probs=120.9
Q ss_pred CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEE---ecCccceeeeEEeCC----CcEEEeecC-----
Q psy8748 1735 AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIREL---LGYEGFLSSCRFIDD----TTLLTGSGD----- 1802 (2004)
Q Consensus 1735 ~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl---~gh~~~Vssvafsdd----~~LlSgS~D----- 1802 (2004)
.....++|.|+|+++++ ..+|.|.+++ + +. ...+... .........+++.++ +.++++...
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~-g~----~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR-E-GR----LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE-T-TE----EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE-C-CC----ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 34679999999985554 5669999988 2 21 1222211 122345678888875 555554432
Q ss_pred -CeEEEEECCCCce-----eEEeec---cccCCeEEEEECCCCCEEEEEEC-------------CCeEEEEECCCC----
Q psy8748 1803 -MKIVTWNLETGQR-----IHEVAQ---AHIGDVVSISLSPDGQYFVTGSV-------------DKSCKLWDFREK---- 1856 (2004)
Q Consensus 1803 -GtI~IWDl~tg~~-----i~~il~---~h~~~ItsLafSPdg~~LaSGS~-------------DGsIrIWDlrs~---- 1856 (2004)
+.|..|+...+.. +..-.. ........++|.|+|.+.++.+. .|.|.-++....
T Consensus 104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 6788888775421 111111 11123468999999976555432 145666665420
Q ss_pred ---------e-EEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeE------EEEEccCCc------------------ee
Q psy8748 1857 ---------K-CVQTFFGHEADVNSVCFHP-SGLAFATGSEDKTA------RLFDIRADQ------------------QI 1901 (2004)
Q Consensus 1857 ---------k-~I~tl~~h~s~ItsIafSP-dg~~LaSgS~DGtI------rIWDLrtgk------------------~i 1901 (2004)
. .+.. .++ .....++|+| ++..+++-...+.+ .+.-+..+. ..
T Consensus 184 npf~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 184 NPFLGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp CTTTTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CcccCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 1 1111 122 2356789999 66655544333321 122222222 11
Q ss_pred EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee------eEEEccCCCCeEEEEEcCCCCEEEEEE
Q psy8748 1902 ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTH------NGVLSGHENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1902 ~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~------l~tL~gHs~~VtsLaFSPDg~~LaSgS 1971 (2004)
..+ ........++| .+|+.+++.-..+.|...++..... ...+.....++.++++.|||.+.++..
T Consensus 262 ~~~---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 262 YFW---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEC---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred Eec---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 111 11123456777 4676666665667888887653321 122222346899999999998766654
No 320
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.18 E-value=5.4 Score=52.05 Aligned_cols=280 Identities=9% Similarity=0.011 Sum_probs=153.6
Q ss_pred ceeEEEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeec--CCeEEEEEcCCCCCCC
Q psy8748 1694 KVNSVHYSGDSRHC-VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGM--DNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~L-ASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~--DGtIrVWDl~t~~~~~ 1770 (2004)
....+++.+.+..| ++-...+.|.+.++........+...-....+++++|....|+.+.. .+.|...+++...
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~--- 157 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE--- 157 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---
Confidence 34578888765544 45555688999998654433333344455789999986555555442 5677777775432
Q ss_pred cceEEEEEecCccceeeeEEeC-CCcEEEe-ecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFID-DTTLLTG-SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSC 1848 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsd-d~~LlSg-S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsI 1848 (2004)
.. .+...-.....+++.. ++.++.+ ...+.|..+|+...... +..........+++.. +..+++-...+.|
T Consensus 158 -~~---~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~--v~~~~l~~P~glav~~-~~ly~tD~~~~~I 230 (628)
T 4a0p_A 158 -RT---TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE--VIADDLPHPFGLTQYQ-DYIYWTDWSRRSI 230 (628)
T ss_dssp -CE---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEEECCSCEEEEEEET-TEEEEEETTTTEE
T ss_pred -eE---EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE--EeeccCCCceEEEEEC-CEEEEecCCCCEE
Confidence 11 1122344566777774 4555444 55688999998765442 2233344556788764 3444444457888
Q ss_pred EEEECCCCeEEEEEecCCC------------------------CeEEEEEe-CCCC-----------------------E
Q psy8748 1849 KLWDFREKKCVQTFFGHEA------------------------DVNSVCFH-PSGL-----------------------A 1880 (2004)
Q Consensus 1849 rIWDlrs~k~I~tl~~h~s------------------------~ItsIafS-Pdg~-----------------------~ 1880 (2004)
...|..+++....+..... ....+|.. |.+. +
T Consensus 231 ~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~ 310 (628)
T 4a0p_A 231 ERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTF 310 (628)
T ss_dssp EEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSE
T ss_pred EEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccce
Confidence 8888765543222211100 11112221 1121 1
Q ss_pred EEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEcc------CCC
Q psy8748 1881 FATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTTHNGVLSG------HEN 1953 (2004)
Q Consensus 1881 LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge~l~tL~g------Hs~ 1953 (2004)
++.+. ...|+-..+.................+..++|++.++.|+.++. .+.|+.++.........+.. ...
T Consensus 311 Ll~s~-~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~ 389 (628)
T 4a0p_A 311 LLFSQ-KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEI 389 (628)
T ss_dssp EEEEE-TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CC
T ss_pred eeeec-cceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccC
Confidence 22221 22333333322111111111122245778999997777766654 67898888754333333322 234
Q ss_pred CeEEEEEcCCCCEEE-EEECCCeEEEEECCCC
Q psy8748 1954 RVTSISLSPNGMALV-TSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1954 ~VtsLaFSPDg~~La-SgS~DGtIrIWdlstg 1984 (2004)
.+.++++...++.|+ +-+..+.|.+.++++.
T Consensus 390 ~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~ 421 (628)
T 4a0p_A 390 QPYDLSIDIYSRYIYWTCEATNVINVTRLDGR 421 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcceEEeeccCCeEEEEcCCCCEEEEEECCCC
Confidence 689999998766555 5556788999988754
No 321
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.18 E-value=0.96 Score=54.68 Aligned_cols=225 Identities=12% Similarity=0.140 Sum_probs=125.2
Q ss_pred CCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEE---ecCccceeeeEEeCC----CcEEEeec----C
Q psy8748 1734 SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIREL---LGYEGFLSSCRFIDD----TTLLTGSG----D 1802 (2004)
Q Consensus 1734 t~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl---~gh~~~Vssvafsdd----~~LlSgS~----D 1802 (2004)
-.....++|.|+|++++ +..+|.|++++. .+ . ..+..+ .........+++.++ +.++++.. +
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G----~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~ 100 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLISP-SG----K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG 100 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEECS-SC----E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CC----c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence 34568999999998555 455698988863 21 1 222221 122345677888865 56655543 3
Q ss_pred ----CeEEEEECCCC--c-----eeEE-eeccccCCeEEEEECCCCCEEEEEEC-------------CCeEEEEECCCC-
Q psy8748 1803 ----MKIVTWNLETG--Q-----RIHE-VAQAHIGDVVSISLSPDGQYFVTGSV-------------DKSCKLWDFREK- 1856 (2004)
Q Consensus 1803 ----GtI~IWDl~tg--~-----~i~~-il~~h~~~ItsLafSPdg~~LaSGS~-------------DGsIrIWDlrs~- 1856 (2004)
+.|..|+...+ . .+.. +..........++|.|+|.+.++.+. .|.|.-++....
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 67888887654 1 1111 11111123467999999986665432 245666655421
Q ss_pred --------eEEEEEecCCCCeEEEEEeC-CCCEEEEEECCC---eEEEEEccCCc------------------eeEEEcC
Q psy8748 1857 --------KCVQTFFGHEADVNSVCFHP-SGLAFATGSEDK---TARLFDIRADQ------------------QIATYLP 1906 (2004)
Q Consensus 1857 --------k~I~tl~~h~s~ItsIafSP-dg~~LaSgS~DG---tIrIWDLrtgk------------------~i~t~~~ 1906 (2004)
..+.. .++ .....++|+| ++..+++-...+ .|.+.. .+. ....+
T Consensus 181 p~~npf~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~-- 254 (354)
T 3a9g_A 181 PADNPFPNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDT-- 254 (354)
T ss_dssp CTTSSSTTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC--
T ss_pred CCCCCCCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeec--
Confidence 11211 233 2356899999 666544432221 233332 121 11111
Q ss_pred CCCCCCeEEEEEc-------CCCCEEEEEeCCCeEEEEECCCC-eee--EEE-ccCCCCeEEEEEcCCCCEEEEEE
Q psy8748 1907 PNKNSGFTSCAVS-------SSGRYIFCGSDDNNVHVWDLLKT-THN--GVL-SGHENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1907 ~~~~s~ItsLafS-------PdG~~LaSGSsDGsIrIWDL~tg-e~l--~tL-~gHs~~VtsLaFSPDg~~LaSgS 1971 (2004)
.........++|. .+|+++++.-..+.|...++... +.. ..+ .+...++.++++.|||.+.++..
T Consensus 255 ~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 255 GSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 0112456778883 57777777666788999988753 222 223 23356799999999998666654
No 322
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.17 E-value=3.1 Score=50.44 Aligned_cols=243 Identities=15% Similarity=0.172 Sum_probs=131.7
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE--e----eCCCCceEEEEEecC----CCEEEEe-
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQV--I----PLRSAWVMSVAFAQS----GNFVACG- 1752 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~t--i----~~Ht~~ItsLafSPd----g~~LaSG- 1752 (2004)
....+...-...+.|+|.|||+++++--..|.|++++..+++.... + .........|+++|+ +.+.++-
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 3444555556788999999999777765589999998766654322 2 123456889999995 4443332
Q ss_pred -ecCCeEEEEEcCCCC----CCCcceE-EEEEe-cCccceeeeEEeCCCcEEEeec--------------CCeEEEEECC
Q psy8748 1753 -GMDNMCTVYDLNNRD----STGAAKV-IRELL-GYEGFLSSCRFIDDTTLLTGSG--------------DMKIVTWNLE 1811 (2004)
Q Consensus 1753 -S~DGtIrVWDl~t~~----~~~~~k~-i~sl~-gh~~~Vssvafsdd~~LlSgS~--------------DGtI~IWDl~ 1811 (2004)
..++.|.-|.+.... .....+. ...+. ........+.|.+++.|+++.. .|.|.-++.+
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 234566666665421 1111222 22222 1223445688887766655432 3566666654
Q ss_pred CCc-------eeEEeeccccCCeEEEEECCCCCEEEEE-ECCCeEEEEECCCCe------------------EEEEEecC
Q psy8748 1812 TGQ-------RIHEVAQAHIGDVVSISLSPDGQYFVTG-SVDKSCKLWDFREKK------------------CVQTFFGH 1865 (2004)
Q Consensus 1812 tg~-------~i~~il~~h~~~ItsLafSPdg~~LaSG-S~DGsIrIWDlrs~k------------------~I~tl~~h 1865 (2004)
..- ....+..++. ....++|+|+|.++++- +.|+.=.|.-+..+. ++..+..+
T Consensus 183 G~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~ 261 (347)
T 3das_A 183 GEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD 261 (347)
T ss_dssp SSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred CCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC
Confidence 320 0111222443 45679999987654432 122211222222111 12223222
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce---eEEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1866 EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ---IATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~---i~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
......++|. +|..++..-..+.|....+..... ...+. ......+..++..|||.++++-+
T Consensus 262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l-~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFL-EGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEES-TTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEee-cCCCCCccEEEECCCCcEEEEEc
Confidence 2355677776 455666665666777777765432 12232 23346788999999987666543
No 323
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.17 E-value=0.21 Score=69.58 Aligned_cols=260 Identities=12% Similarity=0.159 Sum_probs=159.6
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.+.+|.|.|+.++..+...+.. --+.-.+|..+.++.-. ..++.|+++++... .+...- ...|.--.|.
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k------lks~~~-~e~VvfWkWi 114 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSK------MKAHTM-TDDVTFWKWI 114 (1630)
T ss_pred CCceEEEEECCCCCCccccccc---chhhccCCCcceEEEec-CCeEEEeehHHhhh------hccccc-CCCceEEEec
Confidence 3457899999887654322211 12334577777666554 67899999976431 122111 2345556676
Q ss_pred CCCcEEEeecCCeEEEEECCCCceeEEeeccc----cCCeEEEEECCCCCEEEEEE-------CCCeEEEEECCCCeEEE
Q psy8748 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAH----IGDVVSISLSPDGQYFVTGS-------VDKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1792 dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h----~~~ItsLafSPdg~~LaSGS-------~DGsIrIWDlrs~k~I~ 1860 (2004)
+.+.+...+ +..|+.|++.......+++..| ...|..-..+++.++++..| -.|.+.+|..+.+. .+
T Consensus 115 s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ 192 (1630)
T 1xi4_A 115 SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQ 192 (1630)
T ss_pred CCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-ch
Confidence 666655544 4579999997654444444444 45677888899999887655 34788999876543 34
Q ss_pred EEecCCCCeEEEEEeC--C-CCEEEEEEC---CCeEEEEEccCC---cee------EEEcCC-CCCCCeEEEEEcCCCCE
Q psy8748 1861 TFFGHEADVNSVCFHP--S-GLAFATGSE---DKTARLFDIRAD---QQI------ATYLPP-NKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSP--d-g~~LaSgS~---DGtIrIWDLrtg---k~i------~t~~~~-~~~s~ItsLafSPdG~~ 1924 (2004)
.+.||.+....+.... . ...++.+.. .|+++|.++... ... ..+.++ ....-..++..++.-..
T Consensus 193 ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~ 272 (1630)
T 1xi4_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (1630)
T ss_pred hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCE
Confidence 4556655443333321 1 123333322 378999998543 111 111111 11233457888888888
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
++.-+.-|.|++||+.+|.++..-+-....|...+-+....-++.....|.|.--.++..
T Consensus 273 iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 273 VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred EEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 999999999999999999998776655666666555554445666667777776666654
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.99 E-value=1.1 Score=54.02 Aligned_cols=240 Identities=10% Similarity=0.078 Sum_probs=128.1
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe-------eCCCCceEEEEEecC---CCEEEEe-ec------
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI-------PLRSAWVMSVAFAQS---GNFVACG-GM------ 1754 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti-------~~Ht~~ItsLafSPd---g~~LaSG-S~------ 1754 (2004)
-...+.|+|.|+|++++.+...|.|++++. ++.....+ .........++|+|+ +..|.++ ..
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 346789999999993444556799999984 34322111 112345789999996 4444433 22
Q ss_pred -CCeEEEEEcCCCCCC-CcceEEE-EEe---cCccceeeeEEeCCCcEEEeecC--------------CeEEEEECCCCc
Q psy8748 1755 -DNMCTVYDLNNRDST-GAAKVIR-ELL---GYEGFLSSCRFIDDTTLLTGSGD--------------MKIVTWNLETGQ 1814 (2004)
Q Consensus 1755 -DGtIrVWDl~t~~~~-~~~k~i~-sl~---gh~~~Vssvafsdd~~LlSgS~D--------------GtI~IWDl~tg~ 1814 (2004)
...|..|+++..... ...+.+. .+. ........+.|.+++.|+++..+ |.|.-+|.+..-
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235666666532110 0111111 111 11122456888877777766543 567777765320
Q ss_pred ------------eeEEeeccccCCeEEEEECCCCCEEEEEECCC--eEEEEECCCC------------------------
Q psy8748 1815 ------------RIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK--SCKLWDFREK------------------------ 1856 (2004)
Q Consensus 1815 ------------~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG--sIrIWDlrs~------------------------ 1856 (2004)
.......++ .....++|+|+...|+++.... .=.|.-+..+
T Consensus 176 p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 111111222 3467899999444455544321 1122111111
Q ss_pred -------eEEEEEecCCCCeEEEEEeC-------CCCEEEEEECCCeEEEEEccCCceeEEEc-CCCCCCCeEEEEEcCC
Q psy8748 1857 -------KCVQTFFGHEADVNSVCFHP-------SGLAFATGSEDKTARLFDIRADQQIATYL-PPNKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1857 -------k~I~tl~~h~s~ItsIafSP-------dg~~LaSgS~DGtIrIWDLrtgk~i~t~~-~~~~~s~ItsLafSPd 1921 (2004)
.++..+. +...+..+.|.. +|.++++....+.|...++..++...... .......+..+++.||
T Consensus 255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 0111221 223566788864 46677777678888888887654332211 1122346889999999
Q ss_pred CCEEEEEe-CCCeE
Q psy8748 1922 GRYIFCGS-DDNNV 1934 (2004)
Q Consensus 1922 G~~LaSGS-sDGsI 1934 (2004)
|.++++.. .+|.|
T Consensus 334 G~lyv~td~~~g~I 347 (353)
T 2g8s_A 334 GYLYVLTDESSGEL 347 (353)
T ss_dssp SCEEEEECSTTEEE
T ss_pred CcEEEEEeCCCCEE
Confidence 98666543 34544
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.95 E-value=0.51 Score=57.49 Aligned_cols=183 Identities=16% Similarity=0.162 Sum_probs=107.5
Q ss_pred eeeeEEeCCCcEEEee-------------cCCeEEEEECCCC--ceeEEeecc-----ccCCeEEEEECC--CCC-EEEE
Q psy8748 1785 LSSCRFIDDTTLLTGS-------------GDMKIVTWNLETG--QRIHEVAQA-----HIGDVVSISLSP--DGQ-YFVT 1841 (2004)
Q Consensus 1785 Vssvafsdd~~LlSgS-------------~DGtI~IWDl~tg--~~i~~il~~-----h~~~ItsLafSP--dg~-~LaS 1841 (2004)
...+...+++.+++++ .+|.|.++|.++. +...-...+ .......+.+.+ ++. +|++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3344445555655554 6899999999743 322111111 234677777765 454 4444
Q ss_pred EE-C--CCeEEEEECCCC--e--EEEEEecC-CCCeEEEEEeCCCCEEEEEEC-----------------CCeEEEEEcc
Q psy8748 1842 GS-V--DKSCKLWDFREK--K--CVQTFFGH-EADVNSVCFHPSGLAFATGSE-----------------DKTARLFDIR 1896 (2004)
Q Consensus 1842 GS-~--DGsIrIWDlrs~--k--~I~tl~~h-~s~ItsIafSPdg~~LaSgS~-----------------DGtIrIWDLr 1896 (2004)
+. . +..|.+|++... . .+..+.+. -...+.+.+.++|.+.++... .|.|..+|.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 43 2 456778776542 2 23333332 235789999999987666531 244555554
Q ss_pred CCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC-Cee--eEEEccCCCCeEEEEEcC-CCCEEEEEE
Q psy8748 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLK-TTH--NGVLSGHENRVTSISLSP-NGMALVTSS 1971 (2004)
Q Consensus 1897 tgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~t-ge~--l~tL~gHs~~VtsLaFSP-Dg~~LaSgS 1971 (2004)
++..... ..-...+.++|+||++.++++.. .+.|+.|++.. +.. ...+ ...+..-.+++.+ +|++.+++.
T Consensus 211 -~~~~~~~---~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 211 -NDVRVVA---EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp -TCCEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred -CeEEEee---cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence 3221111 11134578999999998887764 68999999863 322 2233 2346678899999 599888776
Q ss_pred CC
Q psy8748 1972 WD 1973 (2004)
Q Consensus 1972 ~D 1973 (2004)
.+
T Consensus 286 ~~ 287 (355)
T 3sre_A 286 PN 287 (355)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 326
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.87 E-value=0.022 Score=75.35 Aligned_cols=226 Identities=8% Similarity=-0.016 Sum_probs=125.8
Q ss_pred CCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEEe-ecCCeEEEEECCCC---ceeEEeeccccCCeEE
Q psy8748 1755 DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTG-SGDMKIVTWNLETG---QRIHEVAQAHIGDVVS 1829 (2004)
Q Consensus 1755 DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSg-S~DGtI~IWDl~tg---~~i~~il~~h~~~Its 1829 (2004)
.+.|+..++.... ...+......+..++|.. ++.|+.+ ...+.|+.+++... .....+..........
T Consensus 385 ~~~I~~id~~~~~-------~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 385 RHEVRKMTLDRSE-------YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457 (699)
T ss_dssp TTC-CEECTTSCC-------EECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred ccceEEEeCCCCc-------ceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence 3457777765432 111112233456677764 4455544 45678999998751 1111222122233566
Q ss_pred EEECCCCCEE-EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC--CCeEEEEEccCCceeEEEcC
Q psy8748 1830 ISLSPDGQYF-VTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE--DKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1830 LafSPdg~~L-aSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~--DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
+++.+.+..| ++-...+.|.++++........+.........+++.|.+.+|+.+.. .+.|.++++... ....+..
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~ 536 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVT 536 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESC
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEe
Confidence 8888654444 44445678999998755433333333355678999996655554432 267888887633 2222321
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGVLS--GHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~tL~--gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
........++|++++..|+.+. ..+.|..+++........+. .......+|++..+ .++++....+.|..++..+
T Consensus 537 -~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 537 -ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp -SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred -CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 1123456799999766555554 56789999986433222222 12233456666544 4455555678999999888
Q ss_pred CeEEEEE
Q psy8748 1984 TIVWKVL 1990 (2004)
Q Consensus 1984 g~l~k~I 1990 (2004)
++..+.+
T Consensus 615 G~~~~~i 621 (699)
T 1n7d_A 615 GSDVNLL 621 (699)
T ss_dssp EEEEECC
T ss_pred CCceEEe
Confidence 7655544
No 327
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.81 E-value=1.1 Score=54.11 Aligned_cols=229 Identities=8% Similarity=0.057 Sum_probs=120.6
Q ss_pred ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEE-EEEecCccceeeeEEeC----CCcEEEeec--------C
Q psy8748 1736 WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVI-RELLGYEGFLSSCRFID----DTTLLTGSG--------D 1802 (2004)
Q Consensus 1736 ~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i-~sl~gh~~~Vssvafsd----d~~LlSgS~--------D 1802 (2004)
....|+|.|+|+.++++...|.|++++.+... ....... ............+++.+ ++.++++.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~-~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGL-SAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEE-CCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCce-eeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 46789999999934455567999988753211 0000000 01111233456778876 355554432 2
Q ss_pred CeEEEEECCCCc----eeEEeecc------ccCCeEEEEECCCCCEEEEEEC-------------CCeEEEEECCCC---
Q psy8748 1803 MKIVTWNLETGQ----RIHEVAQA------HIGDVVSISLSPDGQYFVTGSV-------------DKSCKLWDFREK--- 1856 (2004)
Q Consensus 1803 GtI~IWDl~tg~----~i~~il~~------h~~~ItsLafSPdg~~LaSGS~-------------DGsIrIWDlrs~--- 1856 (2004)
..|..|+...+. ....++.. .......++|.|||.+.++.+. .|.|.-+|....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 357777765431 11112111 1112457999999965554433 246777776432
Q ss_pred -----------eEEEEEecCCCCeEEEEEeC-CCCEEEEEECCC--eEEEEEccCCce----------------------
Q psy8748 1857 -----------KCVQTFFGHEADVNSVCFHP-SGLAFATGSEDK--TARLFDIRADQQ---------------------- 1900 (2004)
Q Consensus 1857 -----------k~I~tl~~h~s~ItsIafSP-dg~~LaSgS~DG--tIrIWDLrtgk~---------------------- 1900 (2004)
..+.. .++ .....++|+| +|. |+++.... .=.|.-+..+..
T Consensus 178 ~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCcCCCCCCccEEE-EcC-cCccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 11111 122 3467899999 554 44443221 112222211111
Q ss_pred ---------eEEEcCCCCCCCeEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCeeeEE--E-ccCCCCeEEEEEc
Q psy8748 1901 ---------IATYLPPNKNSGFTSCAVSS-------SGRYIFCGSDDNNVHVWDLLKTTHNGV--L-SGHENRVTSISLS 1961 (2004)
Q Consensus 1901 ---------i~t~~~~~~~s~ItsLafSP-------dG~~LaSGSsDGsIrIWDL~tge~l~t--L-~gHs~~VtsLaFS 1961 (2004)
...+ .+......+.|.. +|+++++.-..+.|...++..++.... + .....++.++++.
T Consensus 255 ~~~~~~~~P~~~~---~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 255 EIVAGTEQPVFYW---KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp SSCTTSCCCSEEE---SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCCccCCeEEe---CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 0011 1113456677763 467777766778888888876654332 2 2334689999999
Q ss_pred CCCCEEEEEE
Q psy8748 1962 PNGMALVTSS 1971 (2004)
Q Consensus 1962 PDg~~LaSgS 1971 (2004)
|||.+.++..
T Consensus 332 pdG~lyv~td 341 (353)
T 2g8s_A 332 PDGYLYVLTD 341 (353)
T ss_dssp TTSCEEEEEC
T ss_pred CCCcEEEEEe
Confidence 9998666543
No 328
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.61 E-value=6.1 Score=48.07 Aligned_cols=197 Identities=10% Similarity=0.136 Sum_probs=116.1
Q ss_pred ccceeEEEEeCCCCEEEEEe------------CCCeEEEEECCC--CceEE-EeeC-----CCCceEEEEEec--CCC-E
Q psy8748 1692 INKVNSVHYSGDSRHCVSGS------------LDGKLIIWDTWT--GNKTQ-VIPL-----RSAWVMSVAFAQ--SGN-F 1748 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS------------~DGtIrVWDl~T--gk~l~-ti~~-----Ht~~ItsLafSP--dg~-~ 1748 (2004)
..+.-++++.|+|..+++++ .+|.|.++|..+ ++... .+.+ .......+.+.+ ++. +
T Consensus 49 ~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 49 DNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 34566778888876555542 689999999874 22211 2222 123577888766 343 3
Q ss_pred EEEe-ec--CCeEEEEEcCCCCCCCcceEEEEEecC-ccceeeeEEeCCCcEEEeec------------------CCeEE
Q psy8748 1749 VACG-GM--DNMCTVYDLNNRDSTGAAKVIRELLGY-EGFLSSCRFIDDTTLLTGSG------------------DMKIV 1806 (2004)
Q Consensus 1749 LaSG-S~--DGtIrVWDl~t~~~~~~~k~i~sl~gh-~~~Vssvafsdd~~LlSgS~------------------DGtI~ 1806 (2004)
|+++ .. +..|.+|+++... ..........+. -.....+...+++.+++++. .|.|+
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~--~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEE--KSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTT--TEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCC--CEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 4443 22 5688899887542 123334444432 22345666666666555432 35666
Q ss_pred EEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCC-CeE--EEEEecCCCCeEEEEEeC-CCCEE
Q psy8748 1807 TWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFRE-KKC--VQTFFGHEADVNSVCFHP-SGLAF 1881 (2004)
Q Consensus 1807 IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs-~k~--I~tl~~h~s~ItsIafSP-dg~~L 1881 (2004)
.+|.. + .... ...-.....++|+||++.++++. ..+.|+.|++.. +.. ...+ ...+..-.+++.+ +|++.
T Consensus 207 r~d~~--~-~~~~-~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 207 YYSPN--D-VRVV-AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLW 281 (355)
T ss_dssp EECTT--C-CEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEE
T ss_pred EEECC--e-EEEe-ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEE
Confidence 66653 2 2122 23345578999999999887775 467899999863 322 2233 3356678899999 59877
Q ss_pred EEEECC-CeEEEEEc
Q psy8748 1882 ATGSED-KTARLFDI 1895 (2004)
Q Consensus 1882 aSgS~D-GtIrIWDL 1895 (2004)
+++..+ +.|..||.
T Consensus 282 va~~~~g~~v~~~~P 296 (355)
T 3sre_A 282 VGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEEESCHHHHHSCCT
T ss_pred EEecCCceEEEEECC
Confidence 766544 34544544
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.56 E-value=0.99 Score=52.87 Aligned_cols=229 Identities=11% Similarity=0.122 Sum_probs=112.5
Q ss_pred EEEEEeCCCeEEEEECCCCceEEE-eeCCCCceEEEEEecCCCEEEEeec----CC-------eEEEEEcCCCCCCCcce
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQV-IPLRSAWVMSVAFAQSGNFVACGGM----DN-------MCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~t-i~~Ht~~ItsLafSPdg~~LaSGS~----DG-------tIrVWDl~t~~~~~~~k 1773 (2004)
.++.|+. .+..||..+++-... ...........+...++..++.|+. ++ .+..||..+.. ..
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~----W~ 91 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE----WV 91 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE----EE
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc----EE
Confidence 3444543 488999888765442 1211112222233456778888873 12 16667765432 11
Q ss_pred EEEEEecCccceeeeEEeCCCcEEEeecC-------CeEEEEECCCCceeEEeecc-ccCCeEEEEECCCCCEEEEEEC-
Q psy8748 1774 VIRELLGYEGFLSSCRFIDDTTLLTGSGD-------MKIVTWNLETGQRIHEVAQA-HIGDVVSISLSPDGQYFVTGSV- 1844 (2004)
Q Consensus 1774 ~i~sl~gh~~~Vssvafsdd~~LlSgS~D-------GtI~IWDl~tg~~i~~il~~-h~~~ItsLafSPdg~~LaSGS~- 1844 (2004)
......... .-.++...++..++.|+.+ ..+.+||..+++........ ....- +++. .+++.++.|+.
T Consensus 92 ~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~ 168 (318)
T 2woz_A 92 GLPPLPSAR-CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKT 168 (318)
T ss_dssp ECSCBSSCB-CSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEE
T ss_pred ECCCCCccc-cccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCC
Confidence 111111111 1222333455566666653 35888999877644221000 01111 1222 35666677664
Q ss_pred -----CCeEEEEECCCCeEEEEEecCCC-CeEEEEEeCCCCEEEEEECC-----CeEEEEEccCCceeEEEcCCCCCCCe
Q psy8748 1845 -----DKSCKLWDFREKKCVQTFFGHEA-DVNSVCFHPSGLAFATGSED-----KTARLFDIRADQQIATYLPPNKNSGF 1913 (2004)
Q Consensus 1845 -----DGsIrIWDlrs~k~I~tl~~h~s-~ItsIafSPdg~~LaSgS~D-----GtIrIWDLrtgk~i~t~~~~~~~s~I 1913 (2004)
-..+.+||..+.+-...-..... .-.+++. -++..++.|+.+ ..+.+||+.+.+-...-..+......
T Consensus 169 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 247 (318)
T 2woz_A 169 DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI 247 (318)
T ss_dssp SSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC
T ss_pred CCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 23589999987753322111111 1112222 256677777654 34778998776543222112222222
Q ss_pred EEEEEcCCCCEEEEEeCC--------------CeEEEEECCCCeeeE
Q psy8748 1914 TSCAVSSSGRYIFCGSDD--------------NNVHVWDLLKTTHNG 1946 (2004)
Q Consensus 1914 tsLafSPdG~~LaSGSsD--------------GsIrIWDL~tge~l~ 1946 (2004)
..+. .++++++.|+.+ ..+.+||..+.+-..
T Consensus 248 ~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 248 SLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp EEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred EEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 2222 356777777654 357888887765443
No 330
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.51 E-value=6.3 Score=47.60 Aligned_cols=232 Identities=11% Similarity=0.039 Sum_probs=134.7
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEE
Q psy8748 1697 SVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIR 1776 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~ 1776 (2004)
+.-.+|..+.+|.-. ..++.|+|+++..++..+... ..|.--.|-.+. .|+..+ +..|.-|+++... .+.+
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s-----~P~k 141 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGES-----QPVK 141 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSS-EEEEEE-SSEEEEEESSTTC-----CCEE
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCC-eEEEEc-CCcEEEEcccCCC-----CCce
Confidence 344578888777654 678999999999999887764 457666776443 343333 4569999997521 2223
Q ss_pred EEecCcc--ceeeeEE--eCCC-c-EEEee------cCCeEEEEECCCCceeEEeeccccCCeEEEEECCC---CCEEEE
Q psy8748 1777 ELLGYEG--FLSSCRF--IDDT-T-LLTGS------GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD---GQYFVT 1841 (2004)
Q Consensus 1777 sl~gh~~--~Vssvaf--sdd~-~-LlSgS------~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd---g~~LaS 1841 (2004)
.+..|.. ...-+.| ..+. . +++|- -.|.+.+|..+.+.. +...+|.+....+.+.-+ .+.|+.
T Consensus 142 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s--Q~ieGhaa~F~~~~~~g~~~~~~lf~f 219 (365)
T 2xzh_A 142 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIEGHAASFAQFKMEGNAEESTLFCF 219 (365)
T ss_dssp EEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE--EEECCSEEEEEEECCTTCSSCEEEEEE
T ss_pred eeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc--ceeeeeeeeeEEEecCCCCCCceEEEE
Confidence 3333221 1112222 2222 2 22222 237889999876543 455666654443333211 123333
Q ss_pred EEC---CCeEEEEECCCC---------eEEEEEec---CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC
Q psy8748 1842 GSV---DKSCKLWDFREK---------KCVQTFFG---HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1842 GS~---DGsIrIWDlrs~---------k~I~tl~~---h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
+.. .+.++|.++... +.+..+.. ..+-..++..++.-..++.-+.-|.|++||+.++.++..-..
T Consensus 220 a~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrI 299 (365)
T 2xzh_A 220 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 299 (365)
T ss_dssp EEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEecc
Confidence 332 258999988432 11222222 234456788888778899999999999999999999877644
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
.. ..|...+.+.+..=+++....|.|.-..+..
T Consensus 300 S~--d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 300 SG--ETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp CS--SCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred CC--CceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 33 3344444443333344444666665555443
No 331
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.28 E-value=3.3 Score=50.18 Aligned_cols=233 Identities=15% Similarity=0.183 Sum_probs=126.1
Q ss_pred eeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEE----ecCccceeeeEEeCC----CcEEEe--
Q psy8748 1730 IPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIREL----LGYEGFLSSCRFIDD----TTLLTG-- 1799 (2004)
Q Consensus 1730 i~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl----~gh~~~Vssvafsdd----~~LlSg-- 1799 (2004)
+...-.....|+|.|+|..+++--..|.|++++...+. ...+... .........+++.++ +.+++.
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~----~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR----KTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC----EEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc----EeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 33334457899999999977776658989888754332 1222211 123455677888753 445443
Q ss_pred -ecCCeEEEEECCCCc----------eeEE-eeccccCCeEEEEECCCCCEEEEEEC-------------CCeEEEEECC
Q psy8748 1800 -SGDMKIVTWNLETGQ----------RIHE-VAQAHIGDVVSISLSPDGQYFVTGSV-------------DKSCKLWDFR 1854 (2004)
Q Consensus 1800 -S~DGtI~IWDl~tg~----------~i~~-il~~h~~~ItsLafSPdg~~LaSGS~-------------DGsIrIWDlr 1854 (2004)
..++.|.-|....+. .+.. +..........|+|.|||.+.++.+. .|.|.-++..
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 245667777665421 1111 11111223457999999987666542 3555555544
Q ss_pred CC---------eEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCce------------------eEEEcC
Q psy8748 1855 EK---------KCVQTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQ------------------IATYLP 1906 (2004)
Q Consensus 1855 s~---------k~I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~------------------i~t~~~ 1906 (2004)
.. ..+.. .+|. ....++|+|+|.++++-. .|+.=.|.-+..+.. +..+.
T Consensus 183 G~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~- 259 (347)
T 3das_A 183 GEPAPGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS- 259 (347)
T ss_dssp SSBCTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC-
T ss_pred CCccCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC-
Confidence 22 11211 2443 356899999877555432 222222222222211 11110
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee----eEEEccCCCCeEEEEEcCCCCEEEEEE
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTH----NGVLSGHENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~----l~tL~gHs~~VtsLaFSPDg~~LaSgS 1971 (2004)
.+......++|. +|..++..-..+.|....+..... ...+.+..+++.+|+..|||.++++.+
T Consensus 260 -~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 260 -TDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp -TTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred -CCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 111234566666 456666555566777777654432 233444557899999999998766654
No 332
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.045 Score=66.25 Aligned_cols=190 Identities=13% Similarity=0.055 Sum_probs=105.7
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCC-CCceEEEEE--ec-CCCEEEEe-ecCCeEEEEEcCCCCCCCcceEEEEEe
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLR-SAWVMSVAF--AQ-SGNFVACG-GMDNMCTVYDLNNRDSTGAAKVIRELL 1779 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~H-t~~ItsLaf--SP-dg~~LaSG-S~DGtIrVWDl~t~~~~~~~k~i~sl~ 1779 (2004)
..++.++.||.|.-.|..+|+....++.. ..++....- .+ ++..++.. +.||.+..++..++. .+......
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~----~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL----QKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE----EEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc----EEeeeccc
Confidence 46888999999999999999999988754 122221110 01 22334343 579999999876542 11111111
Q ss_pred cCccceeeeEE------------eCCCcEEEeecCCeEEEEECCCCceeEEeeccccCC------eEEEEEC-----CCC
Q psy8748 1780 GYEGFLSSCRF------------IDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD------VVSISLS-----PDG 1836 (2004)
Q Consensus 1780 gh~~~Vssvaf------------sdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~------ItsLafS-----Pdg 1836 (2004)
... ....+.. ..++.+++|+.+|.+...|..+|+.+.....+.... ..|.... ..+
T Consensus 87 ~lv-~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 87 QLV-STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp HHH-TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred cce-eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 000 0000111 156778999999999999999999987764332211 1111111 124
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEE-----ecCCCC--eE-EEEEeCCCCEEEEEECCCeEEEEEccCCceeE
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKKCVQTF-----FGHEAD--VN-SVCFHPSGLAFATGSEDKTARLFDIRADQQIA 1902 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k~I~tl-----~~h~s~--It-sIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~ 1902 (2004)
..++.|..+..+.+.+ ++++ +..+ ...... +. +-..+.++.+ ++++.||.|.-+|..+|....
T Consensus 166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 5677777777777766 3443 1111 111000 00 0001123555 457889999999998888776
No 333
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.96 E-value=0.79 Score=56.95 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=97.1
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeEEEEEecC----CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc---------
Q psy8748 1833 SPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH----EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ--------- 1899 (2004)
Q Consensus 1833 SPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h----~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk--------- 1899 (2004)
..+|..++++- ++.||..++......+.+... -..|..+..+|+|++++..+ +..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 34566666554 578888887744444444432 23688899999999999886 5579998876321
Q ss_pred ---eeEEEcCCC----CCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCe--eeEEEc---------cCCCCeEEE
Q psy8748 1900 ---QIATYLPPN----KNSGFTSCAVSS---SGRYIFCGSDDNNVHVWDLLKTT--HNGVLS---------GHENRVTSI 1958 (2004)
Q Consensus 1900 ---~i~t~~~~~----~~s~ItsLafSP---dG~~LaSGSsDGsIrIWDL~tge--~l~tL~---------gHs~~VtsL 1958 (2004)
....+.... ...+|..+.|+| .|..|++-..|+.|++||+.... +. .+. .+...|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 112222111 246799999999 46789999999999999997521 22 222 233678999
Q ss_pred EEcCCCCEEEEEE--CCCeEEEE
Q psy8748 1959 SLSPNGMALVTSS--WDQFVKVW 1979 (2004)
Q Consensus 1959 aFSPDg~~LaSgS--~DGtIrIW 1979 (2004)
+|..++-.|...+ .+|.|+-.
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 9998877777755 66766554
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.90 E-value=0.59 Score=55.54 Aligned_cols=236 Identities=9% Similarity=0.018 Sum_probs=112.5
Q ss_pred CCCEEEEEeCC-CeEEEEECCC--CceEEEeeC-C--CCceEEEEEecCCCEEEEeec-C---------CeEEEEEcCCC
Q psy8748 1703 DSRHCVSGSLD-GKLIIWDTWT--GNKTQVIPL-R--SAWVMSVAFAQSGNFVACGGM-D---------NMCTVYDLNNR 1766 (2004)
Q Consensus 1703 DG~~LASGS~D-GtIrVWDl~T--gk~l~ti~~-H--t~~ItsLafSPdg~~LaSGS~-D---------GtIrVWDl~t~ 1766 (2004)
+++.++.||.+ ..+.++|..+ .+-. .+.. . ...-.+++. -++..++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEE-ECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCee-ECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666666643 5688899864 3222 2211 1 111122222 25777777776 2 35788887654
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC---------------------------------------CeEEE
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD---------------------------------------MKIVT 1807 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D---------------------------------------GtI~I 1807 (2004)
. .............-.++...++..++.|+.+ ..+.+
T Consensus 97 ~----W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 97 S----WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp E----EEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred c----EEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 2 2221111111111122233455566777654 57999
Q ss_pred EECCCCceeEEeeccccCCe-EEEEECCCCCEEEEEEC------CCeEEEEEC--CCCeEEE--EEecCCCCeEEEEEeC
Q psy8748 1808 WNLETGQRIHEVAQAHIGDV-VSISLSPDGQYFVTGSV------DKSCKLWDF--REKKCVQ--TFFGHEADVNSVCFHP 1876 (2004)
Q Consensus 1808 WDl~tg~~i~~il~~h~~~I-tsLafSPdg~~LaSGS~------DGsIrIWDl--rs~k~I~--tl~~h~s~ItsIafSP 1876 (2004)
||..+.+............. .+++.. +++.++.|+. ...+.+||+ .+.+-.. .+........+.+...
T Consensus 173 yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~ 251 (357)
T 2uvk_A 173 FDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGIS 251 (357)
T ss_dssp EETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEE
T ss_pred EeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEE
Confidence 99988765422211111111 223332 5666666653 245777887 3333211 1111111111112233
Q ss_pred CCCEEEEEECC----------------------CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCC--
Q psy8748 1877 SGLAFATGSED----------------------KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN-- 1932 (2004)
Q Consensus 1877 dg~~LaSgS~D----------------------GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDG-- 1932 (2004)
++..++.|+.+ ..+.+||+.+.+-...-..+.......++ ..++++++.|+.++
T Consensus 252 ~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~ 329 (357)
T 2uvk_A 252 NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGG 329 (357)
T ss_dssp TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGG
T ss_pred CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCC
Confidence 56677777632 25788998765443322222222222333 34678888888653
Q ss_pred ----eEEEEECCCCeeeEE
Q psy8748 1933 ----NVHVWDLLKTTHNGV 1947 (2004)
Q Consensus 1933 ----sIrIWDL~tge~l~t 1947 (2004)
.|.++++++++.+..
T Consensus 330 ~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 330 KAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CEEEEEEEEEC-CCSCEEE
T ss_pred CEeeeEEEEEEcCcEeEee
Confidence 366668777665544
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.34 Score=58.63 Aligned_cols=192 Identities=11% Similarity=0.007 Sum_probs=101.5
Q ss_pred CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecC-ccceeeeEE---eCCCcEEEe--ecCCeEEEEECCCCceeEEe
Q psy8748 1746 GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY-EGFLSSCRF---IDDTTLLTG--SGDMKIVTWNLETGQRIHEV 1819 (2004)
Q Consensus 1746 g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh-~~~Vssvaf---sdd~~LlSg--S~DGtI~IWDl~tg~~i~~i 1819 (2004)
+..+++++.||.|..+|..+++.. -.+... ......... ..++.++++ +.||.|+.+|..+|......
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~------W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHII------WSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEE------EEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEE------EEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 357888899999999988765322 222111 011111100 012344443 68999999999888654333
Q ss_pred eccc---cCCeEE---EEE-C----CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC--C-----eEEEEEe-----C
Q psy8748 1820 AQAH---IGDVVS---ISL-S----PDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA--D-----VNSVCFH-----P 1876 (2004)
Q Consensus 1820 l~~h---~~~Its---Laf-S----Pdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s--~-----ItsIafS-----P 1876 (2004)
.... ..++.. ..+ . ..+..+++|+.+|.+...|.++|+.+..+..... . ..|.... .
T Consensus 84 ~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 84 SIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp EHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred ccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 2111 111111 000 0 1456789999999999999999999988853311 0 1111111 1
Q ss_pred CCCEEEEEECCCeEEEEEccCCceeEEE-----cCCCCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q psy8748 1877 SGLAFATGSEDKTARLFDIRADQQIATY-----LPPNKNSGFT-SCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNG 1946 (2004)
Q Consensus 1877 dg~~LaSgS~DGtIrIWDLrtgk~i~t~-----~~~~~~s~It-sLafSPdG~~LaSGSsDGsIrIWDL~tge~l~ 1946 (2004)
.+..++.+..+..+.+.+ ++|+ ...+ ........+. .-..+.|+.+ ++++.||.|.-+|..+|..+.
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 235677777777777766 4443 2111 0000000000 0001224566 457889999999988888765
No 336
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.59 E-value=1.2 Score=55.49 Aligned_cols=135 Identities=18% Similarity=0.258 Sum_probs=91.7
Q ss_pred CCeEEEEECCCCceeEEeeccc---cCCeEEEEECCCCCEEEEEECCCeEEEEECCCCe------------EEEEEec--
Q psy8748 1802 DMKIVTWNLETGQRIHEVAQAH---IGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKK------------CVQTFFG-- 1864 (2004)
Q Consensus 1802 DGtI~IWDl~tg~~i~~il~~h---~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k------------~I~tl~~-- 1864 (2004)
++.|+.-++..+...+.....+ -..|..+..+|+|++++..+ +..|.|..+..+. ..+.+.-
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 4677777776444332222221 23688899999999999987 4588888877321 1223321
Q ss_pred ----CCCCeEEEEEeC---CCCEEEEEECCCeEEEEEccCCce-eEE-------EcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1865 ----HEADVNSVCFHP---SGLAFATGSEDKTARLFDIRADQQ-IAT-------YLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1865 ----h~s~ItsIafSP---dg~~LaSgS~DGtIrIWDLrtgk~-i~t-------~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
...+|..+.|+| .+..+++-..|+.|++||+..... ... +........+.+++|..+|-.|++.+
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 256799999999 456899999999999999985221 112 22223336789999999988888766
Q ss_pred --CCCeEEEE
Q psy8748 1930 --DDNNVHVW 1937 (2004)
Q Consensus 1930 --sDGsIrIW 1937 (2004)
.+|.|+-.
T Consensus 199 ~t~~GDIYAl 208 (452)
T 3pbp_A 199 TTEGGDIFAF 208 (452)
T ss_dssp CTTSCEEEEE
T ss_pred cCCCCCEEEE
Confidence 78888754
No 337
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.56 E-value=13 Score=46.37 Aligned_cols=232 Identities=11% Similarity=0.041 Sum_probs=137.0
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEE
Q psy8748 1697 SVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIR 1776 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~ 1776 (2004)
+.-.+|..+.+|--. ..++.|+|+++..++..+.... .|.--.|-.+. .|+..+ +..|+-|+++... .+.+
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s-----~P~k 140 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGES-----QPVK 140 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-EEEEEC-SSEEEEEESSSSC-----CCEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-eEEEEc-CCeeEEecccCCC-----Cchh
Confidence 445567777666554 6799999999999998877654 46666675443 344333 4569999996521 2223
Q ss_pred EEecCcc--ceeeeEE--eCC-Cc-EEEee------cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC---CEEEE
Q psy8748 1777 ELLGYEG--FLSSCRF--IDD-TT-LLTGS------GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG---QYFVT 1841 (2004)
Q Consensus 1777 sl~gh~~--~Vssvaf--sdd-~~-LlSgS------~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg---~~LaS 1841 (2004)
.+..|.. ...-+.| .++ .. +++|- -.|.+.+|..+.+.. ....+|.+....+.+..+. +.++.
T Consensus 141 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s--Q~ieGhaa~F~~~~~~g~~~~~~lf~f 218 (494)
T 1bpo_A 141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIEGHAASFAQFKMEGNAEESTLFCF 218 (494)
T ss_dssp EEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE--EEECCSEEEEEEEECTTCSSEEEEEEE
T ss_pred heecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc--chheeeeeeeEEEecCCCCCCceEEEE
Confidence 3333221 1112222 222 22 22222 247889999876654 4556776655544443211 24444
Q ss_pred EECC---CeEEEEECCCC--------e-EEEEEec---CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC
Q psy8748 1842 GSVD---KSCKLWDFREK--------K-CVQTFFG---HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1842 GS~D---GsIrIWDlrs~--------k-~I~tl~~---h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
+... +.++|.++... + .+..+.. ..+-..++..++.-..++.-+.-|.|++||+.++.++..-..
T Consensus 219 a~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI 298 (494)
T 1bpo_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (494)
T ss_dssp EECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc
Confidence 4432 78999998542 1 1111111 234456888898888899999999999999999999877643
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
.. ..|...+.+....=+++....|.|.-..+..
T Consensus 299 s~--~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 299 SG--ETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp CS--SCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred cC--CceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 33 3444444444444444445666666555543
No 338
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.14 E-value=12 Score=46.69 Aligned_cols=108 Identities=14% Similarity=0.199 Sum_probs=60.3
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE--EeeC------CCCceEEEEEecC---CCEEEEeec------
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQ--VIPL------RSAWVMSVAFAQS---GNFVACGGM------ 1754 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~--ti~~------Ht~~ItsLafSPd---g~~LaSGS~------ 1754 (2004)
-...+.|+|.|+|+++++-...+.|++++..+++... .+.. .......|+|+|+ +..|.++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4466799999999977765544579988866565432 2221 2355779999995 444444332
Q ss_pred -------CCeEEEEEcCCCCCC-CcceEEE-EEec-CccceeeeEEeCCCcEEEe
Q psy8748 1755 -------DNMCTVYDLNNRDST-GAAKVIR-ELLG-YEGFLSSCRFIDDTTLLTG 1799 (2004)
Q Consensus 1755 -------DGtIrVWDl~t~~~~-~~~k~i~-sl~g-h~~~Vssvafsdd~~LlSg 1799 (2004)
...|.-|+.+..... ...+.+. .+.. .......+.|.+++.|+++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence 234555555432110 1111121 1221 2234677888877665554
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.88 E-value=1.4 Score=58.23 Aligned_cols=196 Identities=10% Similarity=0.121 Sum_probs=105.6
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCCceEEEe-e------CCCCceEEEEEec-CCCEEEEeecCC------eEEEEEc
Q psy8748 1702 GDSRHCVSGSLD----GKLIIWDTWTGNKTQVI-P------LRSAWVMSVAFAQ-SGNFVACGGMDN------MCTVYDL 1763 (2004)
Q Consensus 1702 PDG~~LASGS~D----GtIrVWDl~Tgk~l~ti-~------~Ht~~ItsLafSP-dg~~LaSGS~DG------tIrVWDl 1763 (2004)
-++..++.||.+ ..+.+||..+++-...- . .....-.+++... ++..++.||.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777777754 46888998887654433 2 1111123334443 778888887643 4677887
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCC--eEEEEECCCCceeEEee----ccccCCeEEEEECCC-C
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM--KIVTWNLETGQRIHEVA----QAHIGDVVSISLSPD-G 1836 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DG--tI~IWDl~tg~~i~~il----~~h~~~ItsLafSPd-g 1836 (2004)
.+.. ................+.+.++..++.|+.++ .+.+||..++....... ........++.+..+ +
T Consensus 476 ~t~~----W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 476 KTRE----WSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSK 551 (695)
T ss_dssp TTTE----EEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred CCCc----EEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCC
Confidence 6532 22221111111122222223666677777654 69999998876542221 011112233555554 6
Q ss_pred CEEEEEEC--C-----CeEEEEECCCCe------EEEEEe--cCCCCeEEEEEeCCCCEEEEEECC--------CeEEEE
Q psy8748 1837 QYFVTGSV--D-----KSCKLWDFREKK------CVQTFF--GHEADVNSVCFHPSGLAFATGSED--------KTARLF 1893 (2004)
Q Consensus 1837 ~~LaSGS~--D-----GsIrIWDlrs~k------~I~tl~--~h~s~ItsIafSPdg~~LaSgS~D--------GtIrIW 1893 (2004)
+.++.||. + +.+.+||+.+.. -..... .....-.+++...++..++.|+.+ ..+.+|
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 67777765 2 358999988766 111111 111111233334446777777743 459999
Q ss_pred EccCCcee
Q psy8748 1894 DIRADQQI 1901 (2004)
Q Consensus 1894 DLrtgk~i 1901 (2004)
|..+.+-.
T Consensus 632 d~~t~~W~ 639 (695)
T 2zwa_A 632 DPLSETLT 639 (695)
T ss_dssp ETTTTEEE
T ss_pred ECCCCeEE
Confidence 99876544
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.63 E-value=1.4 Score=58.11 Aligned_cols=197 Identities=16% Similarity=0.197 Sum_probs=104.0
Q ss_pred cCCCEEEEeecC----CeEEEEEcCCCCCCCcceEEE-EE----ecCccceeeeEEe--CCCcEEEeecC------CeEE
Q psy8748 1744 QSGNFVACGGMD----NMCTVYDLNNRDSTGAAKVIR-EL----LGYEGFLSSCRFI--DDTTLLTGSGD------MKIV 1806 (2004)
Q Consensus 1744 Pdg~~LaSGS~D----GtIrVWDl~t~~~~~~~k~i~-sl----~gh~~~Vssvafs--dd~~LlSgS~D------GtI~ 1806 (2004)
.++..++.||.+ ..+.+||..+.. ..... .. ......-.++... ++..++.|+.+ ..+.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~----W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDK----IDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSC----EEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCe----EEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEE
Confidence 456677777653 357777776542 22222 10 0111122233334 55556666643 3588
Q ss_pred EEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCC--eEEEEECCCCeEEEEEe-----cCCCCeEEEEEeCC-C
Q psy8748 1807 TWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK--SCKLWDFREKKCVQTFF-----GHEADVNSVCFHPS-G 1878 (2004)
Q Consensus 1807 IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG--sIrIWDlrs~k~I~tl~-----~h~s~ItsIafSPd-g 1878 (2004)
+||..+++....-.......-.+++...+++.++.||.++ .+.+||..+..-...-. .......++.+..+ +
T Consensus 472 ~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 472 IFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSK 551 (695)
T ss_dssp EEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred EEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCC
Confidence 9999886543211111111122333334788888888655 69999998775332211 11122233555555 6
Q ss_pred CEEEEEEC--C-----CeEEEEEccCCc------eeEEEcC-CCCCCCeEEEEEcCCCCEEEEEeC--------CCeEEE
Q psy8748 1879 LAFATGSE--D-----KTARLFDIRADQ------QIATYLP-PNKNSGFTSCAVSSSGRYIFCGSD--------DNNVHV 1936 (2004)
Q Consensus 1879 ~~LaSgS~--D-----GtIrIWDLrtgk------~i~t~~~-~~~~s~ItsLafSPdG~~LaSGSs--------DGsIrI 1936 (2004)
..++.|+. + +.+.+||+.+.. -...... ......... +...++++++.|+. ...+.+
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI-KYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE-EEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE-EEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 67777765 2 358999998776 1111111 111122223 33333777777774 345999
Q ss_pred EECCCCeee
Q psy8748 1937 WDLLKTTHN 1945 (2004)
Q Consensus 1937 WDL~tge~l 1945 (2004)
||..+.+-.
T Consensus 631 yd~~t~~W~ 639 (695)
T 2zwa_A 631 LDPLSETLT 639 (695)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 999876544
No 341
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.18 E-value=1.2 Score=50.93 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=97.7
Q ss_pred cEEEeecCCeEEEEECCCCc------eeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE------EEEE
Q psy8748 1795 TLLTGSGDMKIVTWNLETGQ------RIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC------VQTF 1862 (2004)
Q Consensus 1795 ~LlSgS~DGtI~IWDl~tg~------~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~------I~tl 1862 (2004)
.|++...| +++.=...++. ...++-...-..++.++|+|+|.+.++ .+|.++-.+..+... -..+
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence 45555555 65555444443 122221211246789999999886666 678877777644211 1111
Q ss_pred e-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCcee-----EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy8748 1863 F-GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQI-----ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHV 1936 (2004)
Q Consensus 1863 ~-~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i-----~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrI 1936 (2004)
- .--....++.|.|+|.+.++ .||.|+-++-.+...- ........-..+..+.+.|+|.+.++. ||.++-
T Consensus 83 G~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 83 GNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp ECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred cccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 0 00111478899999987776 5699988875321110 011111122468999999999988877 777554
Q ss_pred EECCCCe------eeEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1937 WDLLKTT------HNGVL-SGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1937 WDL~tge------~l~tL-~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
+...... ....+ .........+.|.+++.+.+.. +| ++|..
T Consensus 159 ~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 159 ALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp ECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEE
T ss_pred cCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEec
Confidence 3322111 11111 1233345557788888766665 66 44444
No 342
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.07 E-value=26 Score=42.22 Aligned_cols=279 Identities=8% Similarity=-0.034 Sum_probs=133.2
Q ss_pred CEEEEEeCCCeEEEEECCC-CceEEEe--eCCCCceEEEEEec-CCCEEEEeecCC--eEEEEEcCCCCCCCcceEEEE-
Q psy8748 1705 RHCVSGSLDGKLIIWDTWT-GNKTQVI--PLRSAWVMSVAFAQ-SGNFVACGGMDN--MCTVYDLNNRDSTGAAKVIRE- 1777 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~T-gk~l~ti--~~Ht~~ItsLafSP-dg~~LaSGS~DG--tIrVWDl~t~~~~~~~k~i~s- 1777 (2004)
..|..|+..| +.+++... +..-... ......|.+|+++| +...+.+++..| .-.||....+.. .......
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~--tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGG--NWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTS--CCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCC--CceECCcc
Confidence 3677777776 54554332 2222222 23346799999998 334444444444 012333332211 1111111
Q ss_pred --Eec--------CccceeeeEEeC---CCcEEEeecCCeEEEEECCCCceeEEeec------------------cccCC
Q psy8748 1778 --LLG--------YEGFLSSCRFID---DTTLLTGSGDMKIVTWNLETGQRIHEVAQ------------------AHIGD 1826 (2004)
Q Consensus 1778 --l~g--------h~~~Vssvafsd---d~~LlSgS~DGtI~IWDl~tg~~i~~il~------------------~h~~~ 1826 (2004)
+.. ....+.++.+.+ .+.+++++..+.|...+-. ++.-..+.. .....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCc
Confidence 010 112455666653 5678887777776665432 222212210 01235
Q ss_pred eEEEEECCC-CCEEEEEECCCeEEEEECCCCeEEEEEec-C------------CCCeEEEEEeCC-CCEEEEEECCCeEE
Q psy8748 1827 VVSISLSPD-GQYFVTGSVDKSCKLWDFREKKCVQTFFG-H------------EADVNSVCFHPS-GLAFATGSEDKTAR 1891 (2004)
Q Consensus 1827 ItsLafSPd-g~~LaSGS~DGsIrIWDlrs~k~I~tl~~-h------------~s~ItsIafSPd-g~~LaSgS~DGtIr 1891 (2004)
+.+|.++|. ...+++++.++.|...+- .++.-..+.. . ...+.++.++|+ ...++++...| |.
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~ 256 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IY 256 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EE
Confidence 789999983 455666655555554432 2222122111 0 124889999985 45677776544 44
Q ss_pred EEEccCCceeEEEcCCCCC---CCeEEEEEcC-CCCEEEEEeC-----------CCeEEEEECCC-CeeeEEEc-cCCC-
Q psy8748 1892 LFDIRADQQIATYLPPNKN---SGFTSCAVSS-SGRYIFCGSD-----------DNNVHVWDLLK-TTHNGVLS-GHEN- 1953 (2004)
Q Consensus 1892 IWDLrtgk~i~t~~~~~~~---s~ItsLafSP-dG~~LaSGSs-----------DGsIrIWDL~t-ge~l~tL~-gHs~- 1953 (2004)
..+ ..++.-..+...... ..+.+++++| +...+.++.. ++...+|.... ++.-..+. +-..
T Consensus 257 ~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~ 335 (394)
T 3b7f_A 257 RMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTD 335 (394)
T ss_dssp EEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCS
T ss_pred EeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCc
Confidence 443 223322222110111 2356788886 3444555432 23345555443 23222221 1110
Q ss_pred ------CeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1954 ------RVTSISLSPN-GMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1954 ------~VtsLaFSPD-g~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
....++++|. ...|+.++.++.|. ...+.++.|+.+.
T Consensus 336 ~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~-~S~D~G~tW~~~~ 379 (394)
T 3b7f_A 336 QAWLTVKRQAMTADAHAPVGVYFGTTGGEIW-ASADEGEHWQCIA 379 (394)
T ss_dssp SCCCCCCTBSEEECCSSSCCEEEECTTSCEE-EESSTTSBCEEEE
T ss_pred cccceEEEEEEEECCCCCCEEEEEeCCCeEE-EECCCCCCceEcc
Confidence 1245788874 34566676666543 3455667788776
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.55 E-value=13 Score=46.47 Aligned_cols=159 Identities=13% Similarity=0.162 Sum_probs=90.5
Q ss_pred cCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE--EEEEec------CCCCeEEEEEeCC---CCEEEEEEC------
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC--VQTFFG------HEADVNSVCFHPS---GLAFATGSE------ 1886 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~--I~tl~~------h~s~ItsIafSPd---g~~LaSgS~------ 1886 (2004)
....+.|+|.|+|+++++-...+.|++++..++.. +..+.. .......|+|+|+ +..|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34567999999998666544334799888655543 222221 2356779999995 555554442
Q ss_pred -------CCeEEEEEccCC-------ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC---------------------
Q psy8748 1887 -------DKTARLFDIRAD-------QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD--------------------- 1931 (2004)
Q Consensus 1887 -------DGtIrIWDLrtg-------k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD--------------------- 1931 (2004)
...|.-|+...+ +.+..............++|.|||.+.++.+..
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~ 185 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQ 185 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHH
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccc
Confidence 235666665432 112221122222346899999999877764431
Q ss_pred -----------CeEEEEECCCCe-----------eeEEE-ccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCC
Q psy8748 1932 -----------NNVHVWDLLKTT-----------HNGVL-SGHENRVTSISLSPNGMALVTS-SWDQFVKVWQESNT 1984 (2004)
Q Consensus 1932 -----------GsIrIWDL~tge-----------~l~tL-~gHs~~VtsLaFSPDg~~LaSg-S~DGtIrIWdlstg 1984 (2004)
|.|.-++.. +. ....+ .+| .....++|+++|.+.++- +.|+.-.|..+..|
T Consensus 186 ~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G 260 (454)
T 1cru_A 186 ELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG 260 (454)
T ss_dssp HHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred cccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence 344444432 22 11122 233 347889999988765543 44555666666554
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.52 E-value=41 Score=43.36 Aligned_cols=274 Identities=10% Similarity=0.064 Sum_probs=141.1
Q ss_pred CCCCEEEEEeC-CCeEEEEECCCCceEEEeeC-CCCceEEEEEe--cCCCEEEEeecCCeEEE------EEcCCCCCCCc
Q psy8748 1702 GDSRHCVSGSL-DGKLIIWDTWTGNKTQVIPL-RSAWVMSVAFA--QSGNFVACGGMDNMCTV------YDLNNRDSTGA 1771 (2004)
Q Consensus 1702 PDG~~LASGS~-DGtIrVWDl~Tgk~l~ti~~-Ht~~ItsLafS--Pdg~~LaSGS~DGtIrV------WDl~t~~~~~~ 1771 (2004)
-||+||+.-.. +..|...++...++-..+.. ....+.++.|- |+..++++++... +-+ ..++.. ..
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~-~P~pndg~~~~~~~~---~~ 215 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFI-IPHPNDGKVFDLQDE---NS 215 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSC-EESSCSSSCCCTTST---TE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceee-ccCCCCCcccccCCh---hh
Confidence 37788887764 57788889988887776654 34568899986 6788888887543 111 000110 01
Q ss_pred ceEEEEEecCccceeeeEEeCCCc-EEEeecCCeEEEEECCC---CceeEEeeccccCCeEEEEEC--------CCCCEE
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTT-LLTGSGDMKIVTWNLET---GQRIHEVAQAHIGDVVSISLS--------PDGQYF 1839 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~DGtI~IWDl~t---g~~i~~il~~h~~~ItsLafS--------Pdg~~L 1839 (2004)
......+.+..-.+..-...+++. ..-.+.+|...++.--+ +..+.... ....=..+.|+ .+|++-
T Consensus 216 y~~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~--~~e~D~~~vfn~~~ie~~vk~G~~~ 293 (638)
T 3sbq_A 216 YTMYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMM--RNERDWVVVFDIHAVEAAVKAGDFI 293 (638)
T ss_dssp EEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHT--CSSCEEEEEEEHHHHHHHHHTTCCB
T ss_pred ceEEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcC--cccccEEEEecHHHHHHHHhcCCeE
Confidence 111111111111111000011111 11122222222222111 11100000 00111112221 123322
Q ss_pred EEEECCC-eEEEEECCC----CeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEEccCCce-----e-----EE
Q psy8748 1840 VTGSVDK-SCKLWDFRE----KKCVQTFFGHEADVNSVCFHPSGLAFATGSE-DKTARLFDIRADQQ-----I-----AT 1903 (2004)
Q Consensus 1840 aSGS~DG-sIrIWDlrs----~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~-DGtIrIWDLrtgk~-----i-----~t 1903 (2004)
. .+| .+.+.|.+. +..+..+..-.....++.++|||+++++++. +.++.++|+++... + ..
T Consensus 294 ~---~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~ 370 (638)
T 3sbq_A 294 T---LGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVI 370 (638)
T ss_dssp C---CTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGE
T ss_pred E---ECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccce
Confidence 1 121 366777665 2222222233344567889999999887764 78899999874211 0 00
Q ss_pred EcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------eeeEEEccCCCCeEEEEE------cCCCCEE
Q psy8748 1904 YLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT----------THNGVLSGHENRVTSISL------SPNGMAL 1967 (2004)
Q Consensus 1904 ~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg----------e~l~tL~gHs~~VtsLaF------SPDg~~L 1967 (2004)
.......-.....+|+++|+-..+-.-|..|.-|++... ..+..+..|-.+- .+.- .+||++|
T Consensus 371 ~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~l 449 (638)
T 3sbq_A 371 VGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWL 449 (638)
T ss_dssp EECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEE
T ss_pred EeeccCCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEE
Confidence 111123455778999999955556668999999998543 3455555554432 2222 4789999
Q ss_pred EEEE---CCCe----------EEEEECCCCe
Q psy8748 1968 VTSS---WDQF----------VKVWQESNTI 1985 (2004)
Q Consensus 1968 aSgS---~DGt----------IrIWdlstg~ 1985 (2004)
++.. .|+. -.+.|+++.+
T Consensus 450 v~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 450 VALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 9984 4654 3888887764
No 345
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.41 E-value=14 Score=43.71 Aligned_cols=162 Identities=11% Similarity=0.029 Sum_probs=93.4
Q ss_pred CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE----CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC
Q psy8748 1802 DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS----VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPS 1877 (2004)
Q Consensus 1802 DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS----~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPd 1877 (2004)
.+.|+..++..++.. .+. . .. +..|++++++|+... .+..|+..++.... ...+..+.. ..++++
T Consensus 87 ~~~Iy~i~~dg~~~~-~l~-~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~ 155 (302)
T 3s25_A 87 RNSLCRIKRNGHGST-VLD-P--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTS 155 (302)
T ss_dssp SEEEEEEETTSCCCE-EEE-C--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEE
T ss_pred CCeEEEEeCCCCcce-Eee-c--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEE
Confidence 357888888776533 221 1 11 236677888888776 23456666766433 333433332 346778
Q ss_pred CCEEEEEEC-CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeEEEccCCCC
Q psy8748 1878 GLAFATGSE-DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD--NNVHVWDLLKTTHNGVLSGHENR 1954 (2004)
Q Consensus 1878 g~~LaSgS~-DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD--GsIrIWDL~tge~l~tL~gHs~~ 1954 (2004)
++.|+-.+. ...|.+.++..+.....+. . .. ...++|++.+|+-...+ ..|..-++.... ...+. ...
T Consensus 156 g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~---~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt--~~~ 226 (302)
T 3s25_A 156 DRYFYYNNPKNGQLYRYDTASQSEALFYD--C---NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT--EAN 226 (302)
T ss_dssp TTEEEEECTTTCCEEEEETTTTEEEEEEC--S---CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS--CSC
T ss_pred CCEEEEEeCCCceEEEEECCCCCEEEEeC--C---Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe--CCC
Confidence 888776654 5678888887655443331 1 12 23466989988876654 356666665443 33333 223
Q ss_pred eEEEEEcCCCCEEEEEEC--CCeEEEEECCCCe
Q psy8748 1955 VTSISLSPNGMALVTSSW--DQFVKVWQESNTI 1985 (2004)
Q Consensus 1955 VtsLaFSPDg~~LaSgS~--DGtIrIWdlstg~ 1985 (2004)
+ ..|+|++.+|+-+.. .+.|..-++++..
T Consensus 227 ~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 227 I--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp E--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred c--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 3 336777888776532 3566666666654
No 346
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=90.26 E-value=3.4 Score=47.29 Aligned_cols=149 Identities=12% Similarity=-0.006 Sum_probs=84.6
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCce------EEEeeC-CCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK------TQVIPL-RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~------l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
..+.+++|+|+|.+.++ .+|.++-.+..+... -..+-. --..-.++.|.++|.+.++ .||.|.-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36779999999986666 678777666544211 111110 0011478899999998888 569887776533
Q ss_pred CCCCC-cceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCc------eeEEeeccccCCeEEEEECCCCCE
Q psy8748 1766 RDSTG-AAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQ------RIHEVAQAHIGDVVSISLSPDGQY 1838 (2004)
Q Consensus 1766 ~~~~~-~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~------~i~~il~~h~~~ItsLafSPdg~~ 1838 (2004)
..... .......-.+.-..+..+.+.++..|.+.. |+.++-+...++. ....+-...-...+-+.|.+++..
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 22111 011111112223456788888899988888 8886554433222 111111122233455678888876
Q ss_pred EEEEECCCeE
Q psy8748 1839 FVTGSVDKSC 1848 (2004)
Q Consensus 1839 LaSGS~DGsI 1848 (2004)
.++. +|.+
T Consensus 196 ~~v~--~g~~ 203 (236)
T 1tl2_A 196 FGVQ--GGKF 203 (236)
T ss_dssp EEEE--TTEE
T ss_pred EEEe--CCeE
Confidence 6665 6643
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.91 E-value=13 Score=43.41 Aligned_cols=222 Identities=12% Similarity=0.005 Sum_probs=116.0
Q ss_pred ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCce
Q psy8748 1736 WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQR 1815 (2004)
Q Consensus 1736 ~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~ 1815 (2004)
.|..++... ...+.-. ||.+..|-.......... ......+..++......++. . ||.|+.|-......
T Consensus 25 ~i~~ia~G~--~h~~~l~-~G~v~~wG~n~~Gqlg~p------~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 25 GVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMP------AATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SCCEEEECS--SEEEEEE-TTEEEEEECCSSSTTSCC------GGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTST
T ss_pred CCcEEEeCC--CeEEEEE-CCEEEEEeCCCCCCCCCC------ccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCC
Confidence 466666542 3333335 899999987653322210 01123455555555444555 4 99999998764322
Q ss_pred eEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEc
Q psy8748 1816 IHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDI 1895 (2004)
Q Consensus 1816 i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDL 1895 (2004)
+- ........|..++.... ..+.-+ ||.|+.|-......+-.-......|..++...+ +.+.-. ||.|..|-.
T Consensus 94 lg-~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~ 166 (282)
T 3qhy_B 94 TT-VPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGD 166 (282)
T ss_dssp TC-CCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEEC
T ss_pred CC-CCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecC
Confidence 21 11122346777776533 444445 999999976542211111112345666655433 333334 799999976
Q ss_pred cCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q psy8748 1896 RADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQF 1975 (2004)
Q Consensus 1896 rtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGt 1975 (2004)
.....+.. +......|..++...+ +.++- .||.|+.|-....-.+..-......|..++-..+....++ ||.
T Consensus 167 n~~gqlg~--p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~ 238 (282)
T 3qhy_B 167 NYFGQTTV--PAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGK 238 (282)
T ss_dssp CTTSTTSC--CGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTE
T ss_pred CCCCCCCC--ceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCE
Confidence 54322211 1111234666665433 33333 5999999976442222111112245777776544333333 899
Q ss_pred EEEEECCC
Q psy8748 1976 VKVWQESN 1983 (2004)
Q Consensus 1976 IrIWdlst 1983 (2004)
|+.|-...
T Consensus 239 v~~wG~n~ 246 (282)
T 3qhy_B 239 VIAWGSSR 246 (282)
T ss_dssp EEEESTTC
T ss_pred EEEecCCC
Confidence 99996554
No 348
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=88.19 E-value=48 Score=39.29 Aligned_cols=237 Identities=13% Similarity=0.045 Sum_probs=130.9
Q ss_pred cCCCEEEEeecCCeEEEEEcCCCCCCCc---ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCC---C----
Q psy8748 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGA---AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLET---G---- 1813 (2004)
Q Consensus 1744 Pdg~~LaSGS~DGtIrVWDl~t~~~~~~---~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~t---g---- 1813 (2004)
++..++++.+.+|.|+--.+..-..... ......+......+........+.++..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 4677889999999999887754321111 11111122233333333344566788889999887776531 1
Q ss_pred --ceeEEe-eccccCCeEEEEECC---CCCEEEEEECCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEeCCCCE
Q psy8748 1814 --QRIHEV-AQAHIGDVVSISLSP---DGQYFVTGSVDKSCKLWDFRE-------KKCVQTFFGHEADVNSVCFHPSGLA 1880 (2004)
Q Consensus 1814 --~~i~~i-l~~h~~~ItsLafSP---dg~~LaSGS~DGsIrIWDlrs-------~k~I~tl~~h~s~ItsIafSPdg~~ 1880 (2004)
..+... .......|.++...+ ++.+++..+..|.++...+.. +.....+.. .+.+..+....++..
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~ 164 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEK 164 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCE
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCE
Confidence 110000 011233455554333 467888999999999988743 222222323 456666666655667
Q ss_pred EEEEECCCeEEEEEccCC----c---eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------ee
Q psy8748 1881 FATGSEDKTARLFDIRAD----Q---QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT---------TH 1944 (2004)
Q Consensus 1881 LaSgS~DGtIrIWDLrtg----k---~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg---------e~ 1944 (2004)
++..+.+|.+..+....- + -+..+... ....+..+..-.++..+++.+..|..+..++... ..
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~ 243 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYT 243 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEE
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCEE
Confidence 888999999999987531 1 11112112 2345666666556777888899999999987432 11
Q ss_pred eEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1945 NGVLS-GHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1945 l~tL~-gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
...+. ...+.+.++....+..-+...+..|.+.-....
T Consensus 244 ~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~ 282 (312)
T 1suu_A 244 SYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAG 282 (312)
T ss_dssp CSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGG
T ss_pred eeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcc
Confidence 11111 223445444333344445555556654434443
No 349
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=88.10 E-value=48 Score=39.19 Aligned_cols=236 Identities=8% Similarity=0.017 Sum_probs=125.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEE---------EeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC---CCCC
Q psy8748 1702 GDSRHCVSGSLDGKLIIWDTWTGNKTQ---------VIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN---RDST 1769 (2004)
Q Consensus 1702 PDG~~LASGS~DGtIrVWDl~Tgk~l~---------ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t---~~~~ 1769 (2004)
|+..++++.+.+|.|+--.+.+.+... .++ ..+.+..+........++..+..|.+.-+.... ....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 456678899999999877665432211 122 233454555555566777777788766555432 2111
Q ss_pred CcceEEE---EEecCccceeeeEE----eCCCcEEEeecCCeEEEEECCCCc-----eeEEe-eccccCCeEEEEECCCC
Q psy8748 1770 GAAKVIR---ELLGYEGFLSSCRF----IDDTTLLTGSGDMKIVTWNLETGQ-----RIHEV-AQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1770 ~~~k~i~---sl~gh~~~Vssvaf----sdd~~LlSgS~DGtI~IWDl~tg~-----~i~~i-l~~h~~~ItsLafSPdg 1836 (2004)
..+.... .+. ....+..+.. .++..++..+.+|.++...+..-. -...+ +..+ +.+..+....+.
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 1222111 122 2233444432 245568999999999998764211 11111 1222 555555555555
Q ss_pred CEEEEEECCCeEEEEECCC---------CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc-------e
Q psy8748 1837 QYFVTGSVDKSCKLWDFRE---------KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ-------Q 1900 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs---------~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk-------~ 1900 (2004)
..++..+.+|.+..++... |.....+ .....|.++....++..+++.+..|.++-.++.... -
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG 236 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL-GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 236 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe-CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Confidence 6788888899888887642 1111122 234566666655556678888999999988874321 1
Q ss_pred eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1901 IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1901 i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
............+..+....+...++..+.+|.+.-+++..
T Consensus 237 ~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 237 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11111122224444444433445566666777766666543
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=87.85 E-value=12 Score=43.82 Aligned_cols=223 Identities=13% Similarity=0.059 Sum_probs=113.7
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcce
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k 1773 (2004)
.|..++.... +.+.-. ||.|+.|-......+..-......|..++...+. .++. . ||.|..|-...........
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 5677776433 223234 8999999754322111111112356666654322 2333 4 8999999876533221111
Q ss_pred EEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1774 VIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1774 ~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
.....+..++......++ -+ +|.|+.|-......+. ........|..++..... .+.-. ||.|+.|-.
T Consensus 99 ------~~~~~v~~ia~G~~hs~a-l~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~ 166 (282)
T 3qhy_B 99 ------EARSGVDAIAAGAWASYA-LK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGD 166 (282)
T ss_dssp ------GGSSSEEEEEEETTEEEE-EE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEEC
T ss_pred ------ccCCCeEEEECcCCEEEE-Ee-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCE--EEEEE-CCEEEEecC
Confidence 012345555554444444 44 9999999876432221 112234567777765332 33334 799999976
Q ss_pred CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCe
Q psy8748 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNN 1933 (2004)
Q Consensus 1854 rs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGs 1933 (2004)
.....+..-......|..++...+ +.+.- .||.|+.|-......+.. +......|..++.... ..++ -. ||.
T Consensus 167 n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~--p~~~~~~v~~i~~G~~-h~~a-l~-~g~ 238 (282)
T 3qhy_B 167 NYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTV--PTEALSGVSAIASGEW-YSLA-LK-NGK 238 (282)
T ss_dssp CTTSTTSCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCC--CGGGGSSCCEEEECSS-CEEE-EE-TTE
T ss_pred CCCCCCCCceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCC--CcccCCCceEEEcCCC-EEEE-EE-CCE
Confidence 542211111111345666665443 32333 599999997654322211 0111234666665443 2333 33 999
Q ss_pred EEEEECCCC
Q psy8748 1934 VHVWDLLKT 1942 (2004)
Q Consensus 1934 IrIWDL~tg 1942 (2004)
|+.|-....
T Consensus 239 v~~wG~n~~ 247 (282)
T 3qhy_B 239 VIAWGSSRT 247 (282)
T ss_dssp EEEESTTCC
T ss_pred EEEecCCCC
Confidence 999976543
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.51 E-value=68 Score=40.24 Aligned_cols=235 Identities=12% Similarity=0.050 Sum_probs=116.5
Q ss_pred cceeEEEEeCCCC-EEEEEeCCCeEEEEECCCCc---eEEEeeC---------CCCceEEEEEecC----CCEEEEeecC
Q psy8748 1693 NKVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGN---KTQVIPL---------RSAWVMSVAFAQS----GNFVACGGMD 1755 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~-~LASGS~DGtIrVWDl~Tgk---~l~ti~~---------Ht~~ItsLafSPd----g~~LaSGS~D 1755 (2004)
..-+.|+|.|||. .++++...|.|++++..... .+..+.. .......|+|+|+ +.+.++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999996 45556678999999743221 2222211 1356789999996 4444443321
Q ss_pred ------------CeEEEEEcCCCCC----CCcceEEEEEe--cCccceeeeEEeCCCcEEEeecC---------------
Q psy8748 1756 ------------NMCTVYDLNNRDS----TGAAKVIRELL--GYEGFLSSCRFIDDTTLLTGSGD--------------- 1802 (2004)
Q Consensus 1756 ------------GtIrVWDl~t~~~----~~~~k~i~sl~--gh~~~Vssvafsdd~~LlSgS~D--------------- 1802 (2004)
..|.-|.+..... ....+.+.... ........+.|.+++.|+++..|
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1444566643211 11223333322 22344567888877776655433
Q ss_pred ---CeEEEEECCCCc-------------------eeEEeeccccCCeEEEEECCC-----CC-EEEEEECCC----eEEE
Q psy8748 1803 ---MKIVTWNLETGQ-------------------RIHEVAQAHIGDVVSISLSPD-----GQ-YFVTGSVDK----SCKL 1850 (2004)
Q Consensus 1803 ---GtI~IWDl~tg~-------------------~i~~il~~h~~~ItsLafSPd-----g~-~LaSGS~DG----sIrI 1850 (2004)
|.|.-.|.+... ....+..+|. ....++|+|. |. +++.+...| .-.|
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei 252 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSARI 252 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence 334444544310 0011122332 3456899986 33 444433212 1223
Q ss_pred EECCCC------eEEEEEecCC-CCeEEEEEeCC-------CCEEEEEECCCeEEEEEccCCce---eEEEc-C------
Q psy8748 1851 WDFREK------KCVQTFFGHE-ADVNSVCFHPS-------GLAFATGSEDKTARLFDIRADQQ---IATYL-P------ 1906 (2004)
Q Consensus 1851 WDlrs~------k~I~tl~~h~-s~ItsIafSPd-------g~~LaSgS~DGtIrIWDLrtgk~---i~t~~-~------ 1906 (2004)
..+..+ .++..+..+. ..+..+.|-.. +.+| ++...+.|....+..... ...+. .
T Consensus 253 ~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f-~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 253 LQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYV-FGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEE-EEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred eeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEE-EecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 333222 1333443221 46777777532 3344 455557776666543321 11110 0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
......+..+.+.|||.++++.+
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 11235689999999999888765
No 352
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=87.41 E-value=53 Score=38.86 Aligned_cols=238 Identities=8% Similarity=-0.011 Sum_probs=131.1
Q ss_pred cCCCEEEEeecCCeEEEEEcCCCCCCCc---ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEEC---CC-----
Q psy8748 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGA---AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNL---ET----- 1812 (2004)
Q Consensus 1744 Pdg~~LaSGS~DGtIrVWDl~t~~~~~~---~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl---~t----- 1812 (2004)
|+..++++.+.+|.|+--.+........ ......+......+........+.++..+..|.++-+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 3566788899999998777654221110 111111222233333344446667888888898776654 22
Q ss_pred -CceeEEee-ccccCCeEEEEEC---CCCCEEEEEECCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEeCCCCE
Q psy8748 1813 -GQRIHEVA-QAHIGDVVSISLS---PDGQYFVTGSVDKSCKLWDFRE-------KKCVQTFFGHEADVNSVCFHPSGLA 1880 (2004)
Q Consensus 1813 -g~~i~~il-~~h~~~ItsLafS---Pdg~~LaSGS~DGsIrIWDlrs-------~k~I~tl~~h~s~ItsIafSPdg~~ 1880 (2004)
|..+.... ......|.++..- .++.+++..+.+|.++...+.. +.....+..+ +.+..+....+...
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 22111111 1233456665442 3566899999999999987642 2111222233 55666655555667
Q ss_pred EEEEECCCeEEEEEccCCce-------eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------ee
Q psy8748 1881 FATGSEDKTARLFDIRADQQ-------IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT---------TH 1944 (2004)
Q Consensus 1881 LaSgS~DGtIrIWDLrtgk~-------i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg---------e~ 1944 (2004)
++..+.+|.+..++...-.. ..-+. -.....+..+....++..+++.+..|.++-.++... ..
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~-L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR-LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-CCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEE-eCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence 88888999988888643211 11111 122345666655556678888999999988877321 11
Q ss_pred eEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1945 NGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1945 l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
...+....+.+..+....+..-++..+.+|.+.-+..+.
T Consensus 239 ~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 239 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 222222335665555544445566777778777666654
No 353
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=87.20 E-value=44 Score=40.05 Aligned_cols=235 Identities=10% Similarity=0.004 Sum_probs=128.3
Q ss_pred CCEEEEEeCCCeEEEEECCCC-------ceEEEee-CCCCceEEEEEecCCCEEEEeecCCeEEEEEc---CCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTG-------NKTQVIP-LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL---NNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tg-------k~l~ti~-~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl---~t~~~~~~~ 1772 (2004)
...+++.+.+|.|+--.+.+. +-...+. ...+.+..+........++.-+..|.++-... ........+
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 346777888888876543221 1111111 12344555555555666666667776655443 322111122
Q ss_pred eEEEE---EecCccceeeeE-Ee---CCCcEEEeecCCeEEEEECCCCce-----eEEeeccccCCeEEEEECCCCCEEE
Q psy8748 1773 KVIRE---LLGYEGFLSSCR-FI---DDTTLLTGSGDMKIVTWNLETGQR-----IHEVAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1773 k~i~s---l~gh~~~Vssva-fs---dd~~LlSgS~DGtI~IWDl~tg~~-----i~~il~~h~~~ItsLafSPdg~~La 1840 (2004)
..+.. +.. ...+..+. .. ++..++..+.+|.|+...+..-.. ...+.....+.+..+........++
T Consensus 83 ~~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEE
Confidence 22111 122 23344333 32 356799999999999987654221 1111112234555555555566788
Q ss_pred EEECCCeEEEEECC--CC---------eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce-------eE
Q psy8748 1841 TGSVDKSCKLWDFR--EK---------KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ-------IA 1902 (2004)
Q Consensus 1841 SGS~DGsIrIWDlr--s~---------k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~-------i~ 1902 (2004)
..+..|.+..+... .- .....+ .....|.++...+++.+++..+..|.++.-.+..... +.
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~ 240 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL 240 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE
Confidence 88999998888766 21 111112 2345677777666677899999999999887643221 22
Q ss_pred EEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1903 TYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
.+........+..+....+...++..+.+|.+.-++..
T Consensus 241 ~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 241 TVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 22222213345555544455677777888888777764
No 354
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.65 E-value=14 Score=52.06 Aligned_cols=232 Identities=11% Similarity=0.038 Sum_probs=121.3
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC-CcceEEEEE
Q psy8748 1700 YSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST-GAAKVIREL 1778 (2004)
Q Consensus 1700 FSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~-~~~k~i~sl 1778 (2004)
.+|..+.+|.-. .+++.|+|+.+..++..+.... .|.--.|-... .|+..+ +..|.-|++...... ..+.....+
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence 456666555443 6789999999988887766544 46666675433 333333 356999999642110 001111111
Q ss_pred ecCccceeeeEEeCC-Cc-EEEe------ecCCeEEEEECCCCceeEEeeccccCCeEEEEECC---CCCEEEEEEC---
Q psy8748 1779 LGYEGFLSSCRFIDD-TT-LLTG------SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP---DGQYFVTGSV--- 1844 (2004)
Q Consensus 1779 ~gh~~~Vssvafsdd-~~-LlSg------S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP---dg~~LaSGS~--- 1844 (2004)
. ...|..-...++ .. +++| .-.|.+.+|..+.+.. ....+|.+....+.... ..+.++.+..
T Consensus 149 ~--~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s--Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~ 224 (1630)
T 1xi4_A 149 A--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (1630)
T ss_pred c--cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc--hhhhHhHhhhheeccCCCCCCceEEEEEEecCC
Confidence 1 111222222222 22 2222 2358889998876543 34456655544444321 1223333322
Q ss_pred CCeEEEEECCCC---e------EEEEEec---CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1845 DKSCKLWDFREK---K------CVQTFFG---HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1845 DGsIrIWDlrs~---k------~I~tl~~---h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
.|.++|.++... . .+..+.. ..+-..++..++.-..++.-+.-|.|++||+.++.++..-.... ..
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~--~~ 302 (1630)
T 1xi4_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG--ET 302 (1630)
T ss_pred CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccC--Cc
Confidence 368899888543 1 1111111 12334567777777788888899999999999998876543222 23
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
|...+.+....=+++....|.|.-..+..
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 33333333222233333555555544433
No 355
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=86.18 E-value=60 Score=38.25 Aligned_cols=209 Identities=9% Similarity=0.028 Sum_probs=113.0
Q ss_pred eCCCCEEEEEe--CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC--------------CeEEEEEcC
Q psy8748 1701 SGDSRHCVSGS--LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD--------------NMCTVYDLN 1764 (2004)
Q Consensus 1701 SPDG~~LASGS--~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D--------------GtIrVWDl~ 1764 (2004)
+.+|.+++-.. .++.|+..+..... ...+... .+--++++|++|.-+... +.|+..+++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 35667666553 35677777754333 3333321 133557888888776543 356666665
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCCcEEEee----cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGS----GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS----~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La 1840 (2004)
..+ ... +.... ...+.. .++.++-.. .+..|+..++...... .+. .+. + ..++++++.|+
T Consensus 97 g~~----~~~---l~~~~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt-~~~--~--~~~~~~g~~iy 160 (302)
T 3s25_A 97 GHG----STV---LDPDP--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIK-NHY--L--FTCNTSDRYFY 160 (302)
T ss_dssp SCC----CEE---EECSC--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCE-EEE-SSC--C--CCSEEETTEEE
T ss_pred CCc----ceE---eecCC--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCeE-EEe-CCC--c--eEeeEECCEEE
Confidence 432 111 11111 112222 344544443 4556777777644332 332 222 1 34567788887
Q ss_pred EEEC-CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC--CeEEEEEccCCceeEEEcCCCCCCCeEEEE
Q psy8748 1841 TGSV-DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED--KTARLFDIRADQQIATYLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1841 SGS~-DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D--GtIrIWDLrtgk~i~t~~~~~~~s~ItsLa 1917 (2004)
..+. ...|...++..+.....+. +... ..++|++.+|+-...+ ..|..-++.... ...+.. ..+ ..
T Consensus 161 ~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~----~~~--~~ 229 (302)
T 3s25_A 161 YNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE----ANI--EH 229 (302)
T ss_dssp EECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC----SCE--EE
T ss_pred EEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC----CCc--ce
Confidence 6665 5678888887765443332 2222 3466888887766544 356666666444 333321 223 34
Q ss_pred EcCCCCEEEEEeC--CCeEEEEECCC
Q psy8748 1918 VSSSGRYIFCGSD--DNNVHVWDLLK 1941 (2004)
Q Consensus 1918 fSPdG~~LaSGSs--DGsIrIWDL~t 1941 (2004)
|+|+|++|+-++. .+.|..-++..
T Consensus 230 ~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 230 YNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EEEETTEEEEEECSSSCEEEEEETTS
T ss_pred EEECCCEEEEEECCCCcEEEEEECCC
Confidence 7888988876533 35677777643
No 356
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=85.93 E-value=50 Score=38.56 Aligned_cols=200 Identities=11% Similarity=0.094 Sum_probs=114.3
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEE---ECCCCceEEEeeCCCCceEEEEEec--CCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIW---DTWTGNKTQVIPLRSAWVMSVAFAQ--SGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVW---Dl~Tgk~l~ti~~Ht~~ItsLafSP--dg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
+.+..+.-.....+|+.-+++|.++-- ++..+.... +-.....|..+.. . +..+++..+.+|.++-..+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 456665555555667777778876643 333221111 2223455666644 4 56799999999999999876532
Q ss_pred CCCcceEEEEEecCccceeeeEE-eCCCcEEEeecCCeEEEEECCC----C---ceeEEeeccccCCeEEEEECCCCCEE
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRF-IDDTTLLTGSGDMKIVTWNLET----G---QRIHEVAQAHIGDVVSISLSPDGQYF 1839 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvaf-sdd~~LlSgS~DGtI~IWDl~t----g---~~i~~il~~h~~~ItsLafSPdg~~L 1839 (2004)
..........+.. .+.+..+.. .....++..+..|.++.++... + .-..-+.......|.++...+++..+
T Consensus 102 ~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 102 YKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp TCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 1111111112222 233333333 3455788899999988887532 1 11111111233556666655667789
Q ss_pred EEEECCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE--EEcc
Q psy8748 1840 VTGSVDKSCKLWDFRE-------KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARL--FDIR 1896 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs-------~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrI--WDLr 1896 (2004)
+..+..|.++...+.. ++-+..+ ...+.+..+....++..++..+.+|.+.. ++..
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 9999999999887642 2223333 23445555544444456777778888877 7764
No 357
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=85.82 E-value=68 Score=38.53 Aligned_cols=259 Identities=7% Similarity=-0.011 Sum_probs=123.5
Q ss_pred cceeEEEEeC--CCCEEEEEeCCC----eEEEEECCCCceEEEeeC--------------CCCceEEEEEecC--CCEEE
Q psy8748 1693 NKVNSVHYSG--DSRHCVSGSLDG----KLIIWDTWTGNKTQVIPL--------------RSAWVMSVAFAQS--GNFVA 1750 (2004)
Q Consensus 1693 ~~VtsLaFSP--DG~~LASGS~DG----tIrVWDl~Tgk~l~ti~~--------------Ht~~ItsLafSPd--g~~La 1750 (2004)
..|.+|++.| ++... .++..| .|...+ ..|+.-..+.. ....|.++++.|. ...+.
T Consensus 55 ~~v~~i~~dp~~~~~l~-~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 55 HTIHHIVQDPREPERML-MAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp SEEEEEEECSSSTTCEE-EEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CceEEEEECCCCCCeEE-EEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 4689999998 44444 444444 343332 23332222211 1125778899872 45566
Q ss_pred EeecCCeEEEEEcCCCCCCCcceEEEEEe----------------cCccceeeeEEeC--CCcEEEeecCCeEEEEECCC
Q psy8748 1751 CGGMDNMCTVYDLNNRDSTGAAKVIRELL----------------GYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLET 1812 (2004)
Q Consensus 1751 SGS~DGtIrVWDl~t~~~~~~~k~i~sl~----------------gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~t 1812 (2004)
+++..+.| |....+.. ......... .....+.++.+.+ .+.+++++.++.|...+-.
T Consensus 133 ~g~~~ggl--~~S~DgG~--tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg- 207 (394)
T 3b7f_A 133 AGTSPQGL--FRSTDHGA--SWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA- 207 (394)
T ss_dssp EEEETTEE--EEESSTTS--BCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-
T ss_pred EEecCCcE--EEEcCCCC--CeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-
Confidence 66555544 33332211 112111110 0123456676663 3567777666655554322
Q ss_pred CceeEEeeccc------------cCCeEEEEECCC-CCEEEEEECCCeEEEEECCCCeEEEEEec-C-C---CCeEEEEE
Q psy8748 1813 GQRIHEVAQAH------------IGDVVSISLSPD-GQYFVTGSVDKSCKLWDFREKKCVQTFFG-H-E---ADVNSVCF 1874 (2004)
Q Consensus 1813 g~~i~~il~~h------------~~~ItsLafSPd-g~~LaSGS~DGsIrIWDlrs~k~I~tl~~-h-~---s~ItsIaf 1874 (2004)
++.-....... ...+.++.++|. ...+++++..| |...+- .++.-..+.. . . ..+.++.+
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~ 285 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVV 285 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEE
Confidence 22222221110 134889999985 46777776544 555442 2332222221 1 1 23567888
Q ss_pred eC-CCCEEEEEEC-----------CCeEEEEEccC-CceeEEEc--CCCCCC----CeEEEEEcCC-CCEEEEEeCCCeE
Q psy8748 1875 HP-SGLAFATGSE-----------DKTARLFDIRA-DQQIATYL--PPNKNS----GFTSCAVSSS-GRYIFCGSDDNNV 1934 (2004)
Q Consensus 1875 SP-dg~~LaSgS~-----------DGtIrIWDLrt-gk~i~t~~--~~~~~s----~ItsLafSPd-G~~LaSGSsDGsI 1934 (2004)
+| +...++++.. ++...+|.... ++.-..+. .+.... ....++++|. ...|++++.++.|
T Consensus 286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 76 3344555532 33345665544 33333221 111100 1135778874 4557777666655
Q ss_pred EEEECCCCeeeEEEccCCCCeEEEEEc
Q psy8748 1935 HVWDLLKTTHNGVLSGHENRVTSISLS 1961 (2004)
Q Consensus 1935 rIWDL~tge~l~tL~gHs~~VtsLaFS 1961 (2004)
..-+ ..++.-..+..+-..+.+++|.
T Consensus 366 ~~S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 366 WASA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred EEEC-CCCCCceEcccCCCCeeEEEEe
Confidence 5332 3344444444444567777764
No 358
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=85.65 E-value=67 Score=38.35 Aligned_cols=236 Identities=11% Similarity=0.079 Sum_probs=130.6
Q ss_pred cCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECC---C------Cc
Q psy8748 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLE---T------GQ 1814 (2004)
Q Consensus 1744 Pdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~---t------g~ 1814 (2004)
|+..++++.+.+|.|+--.+......... ...+......+........+.++..+..|.++-+... . |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~--~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQ--DFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTC--CCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcc--ccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 56778889999999988765421100000 0112222333333344466678888888987776542 1 22
Q ss_pred eeEEee-ccccCCeEEEEECC---CCCEEEEEECCCeEEEEECCC--------CeEEEEEecCCCCeEEEEEeCCCCEEE
Q psy8748 1815 RIHEVA-QAHIGDVVSISLSP---DGQYFVTGSVDKSCKLWDFRE--------KKCVQTFFGHEADVNSVCFHPSGLAFA 1882 (2004)
Q Consensus 1815 ~i~~il-~~h~~~ItsLafSP---dg~~LaSGS~DGsIrIWDlrs--------~k~I~tl~~h~s~ItsIafSPdg~~La 1882 (2004)
.+.... ......|.++...+ ++.+++..+.+|.++...+.. +.....+.. .+.+..+........++
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEE
Confidence 111111 11233466543333 266899999999999988742 221112222 35566666655666788
Q ss_pred EEECCCeEEEEEccCCce-------eEEEcCCCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-------eeeEE
Q psy8748 1883 TGSEDKTARLFDIRADQQ-------IATYLPPNKNSGFTSCAVSSSGR-YIFCGSDDNNVHVWDLLKT-------THNGV 1947 (2004)
Q Consensus 1883 SgS~DGtIrIWDLrtgk~-------i~t~~~~~~~s~ItsLafSPdG~-~LaSGSsDGsIrIWDL~tg-------e~l~t 1947 (2004)
..+.+|.+..++...-.. +.-... .....+..+..-+++. .+++.+..|..+..++... +-+..
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~ 238 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNL-KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVI 238 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCC-CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEEC
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEe-CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEEC
Confidence 888999998888643211 111111 2234466665444455 7888889999888877431 11121
Q ss_pred E---ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1948 L---SGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1948 L---~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
+ ....+.+..+....++..++..+..|.+.-..+++
T Consensus 239 ~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 239 LRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp SCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred eeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 2 22233555443333445566777777776666654
No 359
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=81.61 E-value=1.3e+02 Score=38.75 Aligned_cols=187 Identities=13% Similarity=0.144 Sum_probs=108.3
Q ss_pred cEEEee-cCCeEEEEECCCCceeEEeeccccCCeEEEEEC--CCCCEEEEEECC-------CeEE------------EEE
Q psy8748 1795 TLLTGS-GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLS--PDGQYFVTGSVD-------KSCK------------LWD 1852 (2004)
Q Consensus 1795 ~LlSgS-~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafS--Pdg~~LaSGS~D-------GsIr------------IWD 1852 (2004)
++++-. .+..|-..+++..++-..+.......+.+++|. |+..|+++++.. |... ..|
T Consensus 144 ylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 144 YLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred EEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 344443 456777788887776654545566778899887 677888888753 3210 012
Q ss_pred CCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC---------------eEEEEEcc-------CCc-------eeEE
Q psy8748 1853 FREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK---------------TARLFDIR-------ADQ-------QIAT 1903 (2004)
Q Consensus 1853 lrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG---------------tIrIWDLr-------tgk-------~i~t 1903 (2004)
..+.+....+.- .+....+...++|.+.++.+.+. .+.++|+. .|+ -+..
T Consensus 224 ~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~V 302 (638)
T 3sbq_A 224 AETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPV 302 (638)
T ss_dssp TTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred CCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeE
Confidence 222211111110 12233445567788877776532 35566542 111 0111
Q ss_pred EcCCC-------------CCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCC------ee-------eEEEccCCCCeE
Q psy8748 1904 YLPPN-------------KNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKT------TH-------NGVLSGHENRVT 1956 (2004)
Q Consensus 1904 ~~~~~-------------~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tg------e~-------l~tL~gHs~~Vt 1956 (2004)
+.... .......+.++|||+++++++. +.++.++|+++. +. ..... -.-...
T Consensus 303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPl 381 (638)
T 3sbq_A 303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPL 381 (638)
T ss_dssp EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEE
T ss_pred EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCccc
Confidence 11100 0122345789999999988765 778999998642 11 11222 234568
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1957 SISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1957 sLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
..+|.++|....|.--|..|.-|++..
T Consensus 382 Ht~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 382 HTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred EEEECCCCceEeeeeecceEEEEeccH
Confidence 889999996555666899999999975
No 360
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=81.59 E-value=1e+02 Score=37.47 Aligned_cols=236 Identities=12% Similarity=0.032 Sum_probs=129.0
Q ss_pred ecCCCEEEEeecCCeEEEEEcCCCCC---CCcceEEEEEecCccceeeeEE-eCCCcEEEeecCCeEEEEEC---CC---
Q psy8748 1743 AQSGNFVACGGMDNMCTVYDLNNRDS---TGAAKVIRELLGYEGFLSSCRF-IDDTTLLTGSGDMKIVTWNL---ET--- 1812 (2004)
Q Consensus 1743 SPdg~~LaSGS~DGtIrVWDl~t~~~---~~~~k~i~sl~gh~~~Vssvaf-sdd~~LlSgS~DGtI~IWDl---~t--- 1812 (2004)
-++..++++.+.+|.|+--.+..... .........+. ..+.+..+.. .....++..+..|.++.+.. ..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46788999999999999876543110 01111122222 2334444333 34556888888888776653 21
Q ss_pred ---CceeEEee-ccccCCeEEEEECC---CCCEEEEEECCCeEEEEECCCC-------eEEEEEecCCCCeEEEEEeCCC
Q psy8748 1813 ---GQRIHEVA-QAHIGDVVSISLSP---DGQYFVTGSVDKSCKLWDFREK-------KCVQTFFGHEADVNSVCFHPSG 1878 (2004)
Q Consensus 1813 ---g~~i~~il-~~h~~~ItsLafSP---dg~~LaSGS~DGsIrIWDlrs~-------k~I~tl~~h~s~ItsIafSPdg 1878 (2004)
|..+...+ ......|.++.... ++.+++.++..|.++...+... .....+.. .+.+..+......
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCC
Confidence 22111111 12334566654432 4568999999999999886432 21222322 4455556555556
Q ss_pred CEEEEEECCCeEEEEEccCCce-------eEEEcCCCCCCCeEEEEEcC-------------------------------
Q psy8748 1879 LAFATGSEDKTARLFDIRADQQ-------IATYLPPNKNSGFTSCAVSS------------------------------- 1920 (2004)
Q Consensus 1879 ~~LaSgS~DGtIrIWDLrtgk~-------i~t~~~~~~~s~ItsLafSP------------------------------- 1920 (2004)
..++..+.+|.+..++...-.. +.-+.. .....|..+...+
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRL-AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEEEECCC-----------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEe-CCCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 6788888899988887643111 111111 2223455554443
Q ss_pred ----CCCEEEEEeCCCeEEEEECCCCe---------eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1921 ----SGRYIFCGSDDNNVHVWDLLKTT---------HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1921 ----dG~~LaSGSsDGsIrIWDL~tge---------~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
++..+++.+..|..+...+.... ....+....+.+..+.+..+...++..+..|.+.-..+
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeH
Confidence 45688999999999988874321 11122223345655544444455555666666555544
No 361
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=80.82 E-value=1e+02 Score=36.81 Aligned_cols=237 Identities=7% Similarity=-0.001 Sum_probs=126.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC----ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC---CCCCCcceE
Q psy8748 1702 GDSRHCVSGSLDGKLIIWDTWTG----NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN---RDSTGAAKV 1774 (2004)
Q Consensus 1702 PDG~~LASGS~DGtIrVWDl~Tg----k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t---~~~~~~~k~ 1774 (2004)
|+..++++.+.+|.|+--.+.+. .....++. .+.+..+........++..+..|.+.-+.... ......+..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 56678889999999987654311 11111222 34455555555666777777888766555432 211111221
Q ss_pred EE---EEecCccceeee-EEeC---CCcEEEeecCCeEEEEECCCC------ceeEEeeccccCCeEEEEECCCCCEEEE
Q psy8748 1775 IR---ELLGYEGFLSSC-RFID---DTTLLTGSGDMKIVTWNLETG------QRIHEVAQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1775 i~---sl~gh~~~Vssv-afsd---d~~LlSgS~DGtI~IWDl~tg------~~i~~il~~h~~~ItsLafSPdg~~LaS 1841 (2004)
+. .+. ....+..+ ...+ +..++.++.+|.++...+..- .-+..+.....+.+..+........++.
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence 11 111 22334433 3322 456899999999999877421 1111111122355555555555667888
Q ss_pred EECCCeEEEEECCCC-------eEEEEEe-cCCCCeEEEEEeCCCC-EEEEEECCCeEEEEEccCC-------ceeEEEc
Q psy8748 1842 GSVDKSCKLWDFREK-------KCVQTFF-GHEADVNSVCFHPSGL-AFATGSEDKTARLFDIRAD-------QQIATYL 1905 (2004)
Q Consensus 1842 GS~DGsIrIWDlrs~-------k~I~tl~-~h~s~ItsIafSPdg~-~LaSgS~DGtIrIWDLrtg-------k~i~t~~ 1905 (2004)
.+.+|.+..++...- +-++-+. .....|.++...+++. .+++.+..|..+..++... +-+....
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Confidence 889999888876421 1122121 2234566665555555 7888888999888877531 1111111
Q ss_pred -CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1906 -PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1906 -~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
.......+..+....++..++..+.+|.+.-+++.
T Consensus 241 ~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred ecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 11112234433333334556666777777666654
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=80.40 E-value=1.1e+02 Score=36.75 Aligned_cols=205 Identities=10% Similarity=0.077 Sum_probs=117.4
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEE---ECCCC------ceEEE-ee-CCCCceEEEEEec---CCCEEEEeecCCeE
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIW---DTWTG------NKTQV-IP-LRSAWVMSVAFAQ---SGNFVACGGMDNMC 1758 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVW---Dl~Tg------k~l~t-i~-~Ht~~ItsLafSP---dg~~LaSGS~DGtI 1758 (2004)
+.+..+........++.-+..|.++-. ++..+ ..+.. +. .....|.++...+ +..+++..+.+|.|
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 445555555555667766777776544 34322 21111 11 1244566654443 47899999999999
Q ss_pred EEEEcCCCCCCCc-ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECC--CCce-------eEEeeccccCCeE
Q psy8748 1759 TVYDLNNRDSTGA-AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLE--TGQR-------IHEVAQAHIGDVV 1828 (2004)
Q Consensus 1759 rVWDl~t~~~~~~-~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~--tg~~-------i~~il~~h~~~It 1828 (2004)
+-..+........ ......+......+..........++..+..|.+..+... .-.. ..-+.......|.
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv 201 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLL 201 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEE
T ss_pred EEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEE
Confidence 9998765332111 1111222333333333333455678889999999888776 2111 1111112345677
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCC-------eEEEEEe--cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC
Q psy8748 1829 SISLSPDGQYFVTGSVDKSCKLWDFREK-------KCVQTFF--GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS~DGsIrIWDlrs~-------k~I~tl~--~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt 1897 (2004)
++...+++..++..+..|.++.-.+... +-+..+. ...+.+..+....+...++..+.+|.+..++...
T Consensus 202 ~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 202 SLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 7777777778999999999998875422 1122222 2134455555544555677777888888887643
No 363
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=78.01 E-value=1e+02 Score=40.75 Aligned_cols=238 Identities=9% Similarity=0.051 Sum_probs=118.3
Q ss_pred eeEEE-EeCCCCEEEEE-eCC----CeEEEEECCCCceEEE-ee-CCCC------ceEEEEEecCCCEEEEe--------
Q psy8748 1695 VNSVH-YSGDSRHCVSG-SLD----GKLIIWDTWTGNKTQV-IP-LRSA------WVMSVAFAQSGNFVACG-------- 1752 (2004)
Q Consensus 1695 VtsLa-FSPDG~~LASG-S~D----GtIrVWDl~Tgk~l~t-i~-~Ht~------~ItsLafSPdg~~LaSG-------- 1752 (2004)
...+. ++|++++++.+ +.. ..++++|+.+++.+.. +. .-+. ....++|..++.++++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 34455 78999976643 222 4699999999977631 11 0000 11345887444444432
Q ss_pred --ecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-----EEEee---cCCeEEEEECCC--CceeEEee
Q psy8748 1753 --GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-----LLTGS---GDMKIVTWNLET--GQRIHEVA 1820 (2004)
Q Consensus 1753 --S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-----LlSgS---~DGtI~IWDl~t--g~~i~~il 1820 (2004)
+....|+.|.+-+.. ..-..+.......-.+......++.. +++.+ ....+++.|... ++. ..+.
T Consensus 211 ~~~~~~~v~~~~~Gt~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 287 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESI--EKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKIN 287 (711)
T ss_dssp TTSSBCEEEEEETTSCG--GGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECC
T ss_pred cCCCCCEEEEEECCCCh--HHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEee
Confidence 122467888775432 11122222111111222211223332 33332 225567777653 322 2222
Q ss_pred ccccCCeEEEEECCCCCEEEEE----------ECCCeEEEEECCCCe-------EEEE-Ee-cCCCCeEEEEEeCCCCEE
Q psy8748 1821 QAHIGDVVSISLSPDGQYFVTG----------SVDKSCKLWDFREKK-------CVQT-FF-GHEADVNSVCFHPSGLAF 1881 (2004)
Q Consensus 1821 ~~h~~~ItsLafSPdg~~LaSG----------S~DGsIrIWDlrs~k-------~I~t-l~-~h~s~ItsIafSPdg~~L 1881 (2004)
...... +..+.++.+++.. ...|.|...|+.++. .... +. .....+..+.|..+ ..+
T Consensus 288 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~ 363 (711)
T 4hvt_A 288 MPSDAT---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVF 363 (711)
T ss_dssp SCTTCE---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEE
T ss_pred cCCcce---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEE
Confidence 222111 2233345444422 246778899987531 1222 22 23346778888876 466
Q ss_pred EEEECCCe--EEEEEccCCc-eeEE-EcCCCCCCCeEEEEEcCCCC-EEEEEeC---CCeEEEEECC
Q psy8748 1882 ATGSEDKT--ARLFDIRADQ-QIAT-YLPPNKNSGFTSCAVSSSGR-YIFCGSD---DNNVHVWDLL 1940 (2004)
Q Consensus 1882 aSgS~DGt--IrIWDLrtgk-~i~t-~~~~~~~s~ItsLafSPdG~-~LaSGSs---DGsIrIWDL~ 1940 (2004)
++...+|. +.++|+.++. .... +..+. .+.+.....++++. ++++.+. -+.+..+|+.
T Consensus 364 ~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 364 LATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 77777775 6777776664 2233 32222 24466666667665 4444433 3678888876
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=75.76 E-value=1.3e+02 Score=35.12 Aligned_cols=186 Identities=10% Similarity=0.057 Sum_probs=111.5
Q ss_pred CCCcEEEeecCCeEEEEEC---CCCceeEEeeccccCCeEEEEECC--CCCEEEEEECCCeEEEEECCCC------eEEE
Q psy8748 1792 DDTTLLTGSGDMKIVTWNL---ETGQRIHEVAQAHIGDVVSISLSP--DGQYFVTGSVDKSCKLWDFREK------KCVQ 1860 (2004)
Q Consensus 1792 dd~~LlSgS~DGtI~IWDl---~tg~~i~~il~~h~~~ItsLafSP--dg~~LaSGS~DGsIrIWDlrs~------k~I~ 1860 (2004)
....++.-+..|.++.... ..+.... + ......|..+.. + +..+++..+.+|.++...+... ....
T Consensus 34 t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i 110 (276)
T 3no0_A 34 FTEGLFLVSNRGRVYWIAGSQALQGSKVS-L-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPII 110 (276)
T ss_dssp TTSCEEEEETTSEEEEECSHHHHTSEECC-C-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECS
T ss_pred CCCEEEEEcCCCeEEEEEhhhCccCcccc-c-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEE
Confidence 4556777777887765432 2221111 2 233455666644 4 4678999999999999986543 1111
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce-------eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCe
Q psy8748 1861 TFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ-------IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNN 1933 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~-------i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGs 1933 (2004)
.+. ..+.+..+....+...++..+..|.+..++...-.. ...+.. .....+..+...+++.+++..+..|.
T Consensus 111 ~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L-~~~d~vv~~~~~~~~~~ll~~T~~G~ 188 (276)
T 3no0_A 111 KLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL-EKNDETSGLRIWNGEPYLLVITAKGR 188 (276)
T ss_dssp CCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEEEESSCSEEEEEETTSC
T ss_pred ecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc-CCCCEEEEEEEeCCCCEEEEEeCCCc
Confidence 222 235566666666666888889999998887642111 111111 22345666665566778899999999
Q ss_pred EEEEECCC-------CeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE--EECCC
Q psy8748 1934 VHVWDLLK-------TTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKV--WQESN 1983 (2004)
Q Consensus 1934 IrIWDL~t-------ge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrI--Wdlst 1983 (2004)
++...+.. ++-+..+ ...+.+..+....+...++..+.+|.+.. ++.++
T Consensus 189 ~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 189 VKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 99988632 2222223 23455655544444456777777888777 77654
No 365
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=68.95 E-value=2.4e+02 Score=35.35 Aligned_cols=232 Identities=15% Similarity=0.134 Sum_probs=111.9
Q ss_pred ceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEE-Ee-----cCccceeeeEEeCC----CcEEEe-ec--
Q psy8748 1736 WVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRE-LL-----GYEGFLSSCRFIDD----TTLLTG-SG-- 1801 (2004)
Q Consensus 1736 ~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~s-l~-----gh~~~Vssvafsdd----~~LlSg-S~-- 1801 (2004)
.-..|+|.|+|. .++++...|.|++++.+..........+.. .. ........+++.++ ..+++. +.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999996 566667789999997532211111111110 11 11345567888764 344332 21
Q ss_pred C----------CeEEEEECCCC----------ceeEEee-ccccCCeEEEEECCCCCEEEEEECCC--------------
Q psy8748 1802 D----------MKIVTWNLETG----------QRIHEVA-QAHIGDVVSISLSPDGQYFVTGSVDK-------------- 1846 (2004)
Q Consensus 1802 D----------GtI~IWDl~tg----------~~i~~il-~~h~~~ItsLafSPdg~~LaSGS~DG-------------- 1846 (2004)
+ ..|.-|.+..+ +.+.... .........|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~ 174 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD 174 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence 1 24555665421 1222221 12223467899999998777665433
Q ss_pred ---eEEEEECCCC---------------------eEEEEEecCCCCeEEEEEeCC-----CC-EEEEEECCC----eEEE
Q psy8748 1847 ---SCKLWDFREK---------------------KCVQTFFGHEADVNSVCFHPS-----GL-AFATGSEDK----TARL 1892 (2004)
Q Consensus 1847 ---sIrIWDlrs~---------------------k~I~tl~~h~s~ItsIafSPd-----g~-~LaSgS~DG----tIrI 1892 (2004)
.|.-.|.+.. ..+.. .+|.. ...++|+|. |. +++.+...| .-.|
T Consensus 175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei 252 (463)
T 2wg3_C 175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSARI 252 (463)
T ss_dssp CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence 2333333321 01111 13332 457899996 34 344332212 1233
Q ss_pred EEccCCc------eeEEEcCCCCCCCeEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCe---eeEEE-c------
Q psy8748 1893 FDIRADQ------QIATYLPPNKNSGFTSCAVSS-------SGRYIFCGSDDNNVHVWDLLKTT---HNGVL-S------ 1949 (2004)
Q Consensus 1893 WDLrtgk------~i~t~~~~~~~s~ItsLafSP-------dG~~LaSGSsDGsIrIWDL~tge---~l~tL-~------ 1949 (2004)
..+..+. .+..+. +.....+..+.|-. .|.+| ++...+.|....+.... ....+ .
T Consensus 253 ~~i~~G~~yG~~~P~~~~~-~~~g~Ap~G~~~Y~G~~fP~~~g~~f-~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~ 330 (463)
T 2wg3_C 253 LQIIKGKDYESEPSLLEFK-PFSNGPLVGGFVYRGCQSERLYGSYV-FGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSC 330 (463)
T ss_dssp EEEC----CCSCCCCEECC-C----CEEEEEECCCSSCTTTTTCEE-EEETTSCEEEEEC-----CCEEEEECEEETTSS
T ss_pred eeeccCCCCCCCCCeEEee-CCCCccccceEEEeCCCChhhcceEE-EecCCCcEEEEEeCCCCceeeEEEeecCCcccc
Confidence 3333222 222221 11114567777753 23444 45555777666654332 11122 1
Q ss_pred --cCCCCeEEEEEcCCCCEEEEEE
Q psy8748 1950 --GHENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1950 --gHs~~VtsLaFSPDg~~LaSgS 1971 (2004)
....++.++.+.|||.++++..
T Consensus 331 ~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 331 RGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CSCCCSEEEEEEECTTCCEEEEEE
T ss_pred cccccCcceEEEECCCCCEEEEec
Confidence 1235799999999998877765
No 366
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=68.51 E-value=2.1e+02 Score=34.52 Aligned_cols=270 Identities=11% Similarity=0.096 Sum_probs=130.4
Q ss_pred CEEEEEeCCCeEEEEECCC-Cc-------eEEEe---eC-CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC--
Q psy8748 1705 RHCVSGSLDGKLIIWDTWT-GN-------KTQVI---PL-RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG-- 1770 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~T-gk-------~l~ti---~~-Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~-- 1770 (2004)
+.++.-..||+|+.|-... |+ ..... .. ....|..++. .....+....||.|..|-........
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 4455556678888884332 11 11111 00 0113444443 35566666788999999765422111
Q ss_pred ---cceEEEEEecC-ccceeeeEEe-CCCcEEEeecCCeEEEEECCCCc----------eeEEeecc-ccCCeEEEEECC
Q psy8748 1771 ---AAKVIRELLGY-EGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQ----------RIHEVAQA-HIGDVVSISLSP 1834 (2004)
Q Consensus 1771 ---~~k~i~sl~gh-~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~----------~i~~il~~-h~~~ItsLafSP 1834 (2004)
........... ...+..+... .....++-+.+|.|+.|-....- ........ ....|..++..
T Consensus 89 ~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G- 167 (389)
T 3kci_A 89 GTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG- 167 (389)
T ss_dssp SSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-
T ss_pred CcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC-
Confidence 11111111111 1122333333 34456677889999999654211 11111111 12256666654
Q ss_pred CCCEEEEEECCCeEEEEECCCC----------e-EEEEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc---
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFREK----------K-CVQTFF-GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ--- 1899 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs~----------k-~I~tl~-~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk--- 1899 (2004)
....++-..||.|+.|-.... . ....+. .....|..++......+.++-..||.|+.|-.....
T Consensus 168 -~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG 246 (389)
T 3kci_A 168 -GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLG 246 (389)
T ss_dssp -SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTS
T ss_pred -cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCC
Confidence 455666778999999965321 1 111111 123356666654433566777789999999653211
Q ss_pred -------eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------eeeEEEcc-CCCCeEEEEE
Q psy8748 1900 -------QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT-----------THNGVLSG-HENRVTSISL 1960 (2004)
Q Consensus 1900 -------~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg-----------e~l~tL~g-Hs~~VtsLaF 1960 (2004)
.............|..++.. ..+.++-..||.|+.|-.... .....+.. ....|..|+.
T Consensus 247 ~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~ 324 (389)
T 3kci_A 247 RGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT 324 (389)
T ss_dssp SSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE
T ss_pred CCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe
Confidence 11111111112235555443 345555678999999975321 01111221 2245777665
Q ss_pred cCCCCEEEEEECCCeEEEEECC
Q psy8748 1961 SPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1961 SPDg~~LaSgS~DGtIrIWdls 1982 (2004)
. ....+....||.|+.|-..
T Consensus 325 G--~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 325 G--SLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp C--SSEEEEEETTCCEEEEECC
T ss_pred c--cCeEEEECCCCCEEEeeCC
Confidence 3 3355566789999999764
No 367
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=67.82 E-value=3.1e+02 Score=36.27 Aligned_cols=238 Identities=14% Similarity=0.105 Sum_probs=125.1
Q ss_pred EEEE-EecCCCEEEEee-----cCCeEEEEEcCCCCCCCcceEEEEEecCc-----cceeeeEEeCCCcEEEee------
Q psy8748 1738 MSVA-FAQSGNFVACGG-----MDNMCTVYDLNNRDSTGAAKVIRELLGYE-----GFLSSCRFIDDTTLLTGS------ 1800 (2004)
Q Consensus 1738 tsLa-fSPdg~~LaSGS-----~DGtIrVWDl~t~~~~~~~k~i~sl~gh~-----~~Vssvafsdd~~LlSgS------ 1800 (2004)
..+. ++|++++++.+- .-..++++|+.+++.....-. . .... .....++|.+++.++.+.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~--~-~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE--P-ITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC--C-BCTTCCBCCEETCCEEEEETTEEEECCCCSTTC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc--c-ccccccccccccceeeEECCCEEEEEeCCCCCC
Confidence 4444 788888766542 224799999987642211100 0 0000 112344666666555543
Q ss_pred -----cCCeEEEEECCCCcee-EEeeccccCC-eEEEEECCCCCE-----EEEEECC---CeEEEEECCC--CeEEEEEe
Q psy8748 1801 -----GDMKIVTWNLETGQRI-HEVAQAHIGD-VVSISLSPDGQY-----FVTGSVD---KSCKLWDFRE--KKCVQTFF 1863 (2004)
Q Consensus 1801 -----~DGtI~IWDl~tg~~i-~~il~~h~~~-ItsLafSPdg~~-----LaSGS~D---GsIrIWDlrs--~k~I~tl~ 1863 (2004)
....|+.|.+-+...- ..++.+.... -.+...++++++ +++.+.+ ..+++.|... ++ ...+.
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 287 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKIN 287 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECC
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEee
Confidence 2356888888765321 1223332223 234555666662 4443322 3466667653 33 22332
Q ss_pred cCCCCeEEEEEeCCCCEEEEE----------ECCCeEEEEEccCCc-------eeEEEcCCCCCCCeEEEEEcCCCCEEE
Q psy8748 1864 GHEADVNSVCFHPSGLAFATG----------SEDKTARLFDIRADQ-------QIATYLPPNKNSGFTSCAVSSSGRYIF 1926 (2004)
Q Consensus 1864 ~h~s~ItsIafSPdg~~LaSg----------S~DGtIrIWDLrtgk-------~i~t~~~~~~~s~ItsLafSPdG~~La 1926 (2004)
..... .+..+.++..++.. ...+.|...|+.++. ....+..+.....+..+.+..+ .+++
T Consensus 288 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 288 MPSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp SCTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred cCCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 22221 12334455544422 246779999987642 2233333444566778888865 6777
Q ss_pred EEeCCCe--EEEEECCCCe-eeEE-EccC-CCCeEEEEEcCCCC-EEEEEEC---CCeEEEEECC
Q psy8748 1927 CGSDDNN--VHVWDLLKTT-HNGV-LSGH-ENRVTSISLSPNGM-ALVTSSW---DQFVKVWQES 1982 (2004)
Q Consensus 1927 SGSsDGs--IrIWDL~tge-~l~t-L~gH-s~~VtsLaFSPDg~-~LaSgS~---DGtIrIWdls 1982 (2004)
+...+|. ++++|+.++. .... +... .+.+....+++++. ++++.+. -+.+..+++.
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 7777774 6777776664 2233 3211 34577677767665 4444433 3678888776
No 368
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=67.16 E-value=2.3e+02 Score=34.63 Aligned_cols=169 Identities=11% Similarity=0.117 Sum_probs=99.4
Q ss_pred CeEEEEECCCC--ceeEEeecc-----ccCCeEEEEEC---CC----CCEEEEEE-CCCeEEEEECCCCeEEEEEe----
Q psy8748 1803 MKIVTWNLETG--QRIHEVAQA-----HIGDVVSISLS---PD----GQYFVTGS-VDKSCKLWDFREKKCVQTFF---- 1863 (2004)
Q Consensus 1803 GtI~IWDl~tg--~~i~~il~~-----h~~~ItsLafS---Pd----g~~LaSGS-~DGsIrIWDlrs~k~I~tl~---- 1863 (2004)
-+|.+||+.++ +.++++... ....+..+.+. ++ +.+++.+. ..+.|.++|+.+++.-+...
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 36778888888 777655321 23457788887 22 34555554 35789999999887655442
Q ss_pred cC--------------CCCeEEEEEeCC----CCEEEEEECCC-eEEEEE---ccCC---ceeEEEcCCCCCCCeEEEEE
Q psy8748 1864 GH--------------EADVNSVCFHPS----GLAFATGSEDK-TARLFD---IRAD---QQIATYLPPNKNSGFTSCAV 1918 (2004)
Q Consensus 1864 ~h--------------~s~ItsIafSPd----g~~LaSgS~DG-tIrIWD---Lrtg---k~i~t~~~~~~~s~ItsLaf 1918 (2004)
.. ...+..|+++|+ ++.|+.....+ .+.-.. ++.. ..+..+...+........++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 00 136788899987 67777766554 233332 1221 11222211111233455677
Q ss_pred c-CCCCEEEEEeCCCeEEEEECCC-C---eeeEEEc-c-CCCCeEEEEEcCCCCEEEEEE
Q psy8748 1919 S-SSGRYIFCGSDDNNVHVWDLLK-T---THNGVLS-G-HENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1919 S-PdG~~LaSGSsDGsIrIWDL~t-g---e~l~tL~-g-Hs~~VtsLaFSPDg~~LaSgS 1971 (2004)
+ .+|.++++--..+.|..|+..+ . .....+. . .-..+.++.+..+|.+.+.++
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 6 5777777777788999999865 1 1222222 1 223478888887877666554
No 369
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=60.18 E-value=2.7e+02 Score=32.89 Aligned_cols=194 Identities=10% Similarity=0.004 Sum_probs=111.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCce-------EEEee-CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC---C
Q psy8748 1702 GDSRHCVSGSLDGKLIIWDTWTGNK-------TQVIP-LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST---G 1770 (2004)
Q Consensus 1702 PDG~~LASGS~DGtIrVWDl~Tgk~-------l~ti~-~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~---~ 1770 (2004)
++..++++.+.+|.|+--.+..-+. ...+. ...+.+..+........++..+..|.++-+....-... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 5667889999999999876543321 11111 12344555555556677888888898777765421110 0
Q ss_pred cceE---EEEEecCccceeeeEEe----CCCcEEEeecCCeEEEEECCCCc-----eeEEeeccccCCeEEEEECCCCCE
Q psy8748 1771 AAKV---IRELLGYEGFLSSCRFI----DDTTLLTGSGDMKIVTWNLETGQ-----RIHEVAQAHIGDVVSISLSPDGQY 1838 (2004)
Q Consensus 1771 ~~k~---i~sl~gh~~~Vssvafs----dd~~LlSgS~DGtI~IWDl~tg~-----~i~~il~~h~~~ItsLafSPdg~~ 1838 (2004)
.+.. ...+.. ...+..+... ++..++..+..|.++...+..-. -...+.....+.+..+....++..
T Consensus 86 ~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~ 164 (312)
T 1suu_A 86 KGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEK 164 (312)
T ss_dssp --CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCE
T ss_pred CCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCE
Confidence 0000 001122 2233333222 45668899999999998774321 111111122455666655555667
Q ss_pred EEEEECCCeEEEEECCC---------CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC
Q psy8748 1839 FVTGSVDKSCKLWDFRE---------KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1839 LaSGS~DGsIrIWDlrs---------~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt 1897 (2004)
++..+.+|.+..++... |.....+. ....|.++....++..+++.+..|.....++..
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 88899999998887643 11122222 245566666655667788889999999988753
No 370
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=57.98 E-value=4.1e+02 Score=34.33 Aligned_cols=168 Identities=12% Similarity=0.112 Sum_probs=89.7
Q ss_pred CCceeEEeeccccCCeEEEEECCCC--CEEEEEECCC----eEEEEECCCCeEEEEEecC--CCCeEEEEEeCCCC--EE
Q psy8748 1812 TGQRIHEVAQAHIGDVVSISLSPDG--QYFVTGSVDK----SCKLWDFREKKCVQTFFGH--EADVNSVCFHPSGL--AF 1881 (2004)
Q Consensus 1812 tg~~i~~il~~h~~~ItsLafSPdg--~~LaSGS~DG----sIrIWDlrs~k~I~tl~~h--~s~ItsIafSPdg~--~L 1881 (2004)
.|+.+...-.+|...+..-.|.|+. -.++.+..++ -..+.|..+++.+...... .+......|.|+.. .+
T Consensus 351 dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~~pG~E~ 430 (591)
T 2zux_A 351 DGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPRYPGQEV 430 (591)
T ss_dssp TSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTTSSSCEE
T ss_pred CCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCCCCceEE
Confidence 3444444445888888888888864 4666665542 3556899999988777543 33344444556532 23
Q ss_pred EEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEcc---------C
Q psy8748 1882 ATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG-RYIFCGSDDNNVHVWDLLKTTHNGVLSG---------H 1951 (2004)
Q Consensus 1882 aSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG-~~LaSGSsDGsIrIWDL~tge~l~tL~g---------H 1951 (2004)
.+ ++ .+|+.. ++.+....+ . ..-..+-|.-|. +.++- .+.|.-|+...++....+.. .
T Consensus 431 w~---~~--~l~~~~-G~~i~~~~p-~--~~N~~i~WdGDl~relld---~~~i~k~~~~~~~~~~l~~~~g~~snngtk 498 (591)
T 2zux_A 431 WA---NG--SLYSAK-GVKIGSGVP-S--STNFGIWWDGDLLREQLD---SNRIDKWDYQNGVSKNMLTASGAAANNGTK 498 (591)
T ss_dssp EE---TT--EEECTT-SCBCSSCCC-S--CCSEEECCSSSSSCEEEE---TTEEEEEETTTTEEEEEEECTTEECBSGGG
T ss_pred Ee---cC--ceECCC-CCEecCCCC-C--CcceeEEECCCCcHhhhC---CceEEecccCCCceeEEEeecccccCCCCC
Confidence 33 22 466654 444332211 1 112345666655 34443 34788899877764333322 1
Q ss_pred CCCeEEEEEcCCCC-EEEE-EECCCeEEEEECCCCeEEEEEE
Q psy8748 1952 ENRVTSISLSPNGM-ALVT-SSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1952 s~~VtsLaFSPDg~-~LaS-gS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
..+.....+--|.+ -++. ...+..++||........+...
T Consensus 499 ~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~pt~~r~~t 540 (591)
T 2zux_A 499 ATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIPTEHRLYT 540 (591)
T ss_dssp CBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCCCSCCCBC
T ss_pred CCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCCCCccceEe
Confidence 22333333333322 2443 3445679999876554444333
No 371
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=57.53 E-value=3.3e+02 Score=33.11 Aligned_cols=236 Identities=8% Similarity=-0.012 Sum_probs=128.1
Q ss_pred eCCCCEEEEEeCCCeEEEEECCC---------CceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC---CCC
Q psy8748 1701 SGDSRHCVSGSLDGKLIIWDTWT---------GNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN---RDS 1768 (2004)
Q Consensus 1701 SPDG~~LASGS~DGtIrVWDl~T---------gk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t---~~~ 1768 (2004)
-|+..++++.+.+|.|+--.+.+ |.....++ ....+..+........++..+..|.+.-+.... ...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 36788999999999999764321 22222333 345566666666667777777888776655432 211
Q ss_pred CCcceEEE---EEecCccceeeeEEe----CCCcEEEeecCCeEEEEECCCCc-----eeEEeeccccCCeEEEEECCCC
Q psy8748 1769 TGAAKVIR---ELLGYEGFLSSCRFI----DDTTLLTGSGDMKIVTWNLETGQ-----RIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1769 ~~~~k~i~---sl~gh~~~Vssvafs----dd~~LlSgS~DGtI~IWDl~tg~-----~i~~il~~h~~~ItsLafSPdg 1836 (2004)
...+.... .+. ....|..+... ++..++.++..|.++...+..-. -+..+.....+.+..+....+.
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 11221111 122 23344444332 34579999999999998764321 1111111223455555555556
Q ss_pred CEEEEEECCCeEEEEECCC---------CeEEEEEecCCCCeEEEEEeC-------------------------------
Q psy8748 1837 QYFVTGSVDKSCKLWDFRE---------KKCVQTFFGHEADVNSVCFHP------------------------------- 1876 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs---------~k~I~tl~~h~s~ItsIafSP------------------------------- 1876 (2004)
..++..+.+|.+..++... |.....+ .....|.++...+
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRL-AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEEEECCC-----------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEe-CCCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 6788888899888887532 1111112 1234455554444
Q ss_pred ----CCCEEEEEECCCeEEEEEccCCce-------eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1877 ----SGLAFATGSEDKTARLFDIRADQQ-------IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1877 ----dg~~LaSgS~DGtIrIWDLrtgk~-------i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
++..+++.+..|..+...+..... +..+......+.+..+.+..++..++..+..|.+.-..+
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeH
Confidence 445788999999998888753221 222222222334544444344455656667776665554
No 372
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.20 E-value=6.5e+02 Score=34.35 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=33.1
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEc
Q psy8748 1868 DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1868 ~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~ 1905 (2004)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46677888888899999999999999999999887763
No 373
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=48.93 E-value=6.1e+02 Score=33.69 Aligned_cols=150 Identities=9% Similarity=0.002 Sum_probs=74.0
Q ss_pred ccceeEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEEEeeCC-------CCceEEEEEecC-CCEEEEeecCCe----E
Q psy8748 1692 INKVNSVHYSGD-SRHCVSGSLDGKLIIWDTWTGNKTQVIPLR-------SAWVMSVAFAQS-GNFVACGGMDNM----C 1758 (2004)
Q Consensus 1692 t~~VtsLaFSPD-G~~LASGS~DGtIrVWDl~Tgk~l~ti~~H-------t~~ItsLafSPd-g~~LaSGS~DGt----I 1758 (2004)
.+.|.+|+++|. ...++.++..|.|...+ ..|+.-..+..+ ...|.+++++|. .+.++++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999985 45666677777766655 344443333322 236999999984 344444432211 3
Q ss_pred EEEEcCCCCCCCcceEEEEEec------CccceeeeEEeC--CCcEEEeecCCeEEEEECCCCceeEEeec-----cccC
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLG------YEGFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQRIHEVAQ-----AHIG 1825 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~g------h~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~~i~~il~-----~h~~ 1825 (2004)
.||.-..+.. ..+....... ....+..+.+.+ .+.++++...+.|.. ..+.|+.-..+.. ....
T Consensus 93 ~v~~S~DgG~--TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 93 AFYVSEDRGQ--SFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp EEEEESSTTS--EEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTT
T ss_pred EEEEECCCCC--cceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCC
Confidence 4454433221 1222211000 011233455543 345666654444322 2222332222211 1124
Q ss_pred CeEEEEECCC-CCEEEEEECC
Q psy8748 1826 DVVSISLSPD-GQYFVTGSVD 1845 (2004)
Q Consensus 1826 ~ItsLafSPd-g~~LaSGS~D 1845 (2004)
.+..+.++|. +..++++..+
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESS
T ss_pred CeEEEEECCCCCCEEEEEEcC
Confidence 5788999884 4566666654
No 374
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=45.18 E-value=4.7e+02 Score=31.32 Aligned_cols=232 Identities=10% Similarity=0.048 Sum_probs=120.4
Q ss_pred CCEEEEEeCCCeEEEEECCCC--------c---eEEEeeC-CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC-
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTG--------N---KTQVIPL-RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG- 1770 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tg--------k---~l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~- 1770 (2004)
....+....||.|+.|-.... . ....+.. ....+..++.+......+....||.|..|-........
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 345555567888888853321 1 1111221 23345556676667777777889999999765421111
Q ss_pred ----cceEEEEEecCc-cceeeeEEeCCCcEEEeecCCeEEEEECCCC-c---------eeEEee-ccccCCeEEEEECC
Q psy8748 1771 ----AAKVIRELLGYE-GFLSSCRFIDDTTLLTGSGDMKIVTWNLETG-Q---------RIHEVA-QAHIGDVVSISLSP 1834 (2004)
Q Consensus 1771 ----~~k~i~sl~gh~-~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg-~---------~i~~il-~~h~~~ItsLafSP 1834 (2004)
.......+.... ..+..++. .....++-+.+|.|+.|-.... + ...... ......|..++...
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~-G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~ 220 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAA-GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS 220 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEE-CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC
T ss_pred CCCccCcCCeEecccCCCeEEEEEe-CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC
Confidence 111111111111 13444433 3345566678999999975431 1 111111 11233577777654
Q ss_pred CCCEEEEEECCCeEEEEECCCC----------eE-EEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc---
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFREK----------KC-VQTFFG-HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ--- 1899 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs~----------k~-I~tl~~-h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk--- 1899 (2004)
.....++-..||.|+.|-.... .. ...+.. ....|..++... .+.++-..||.|+.|-.....
T Consensus 221 g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n~~GqLG 298 (389)
T 3kci_A 221 GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAVYTWGKGDYHRLG 298 (389)
T ss_dssp SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCEEEEECCGGGTTC
T ss_pred CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeEEEEeCCCCCCCC
Confidence 3456777788999999964321 11 111111 122455555543 355555789999999753211
Q ss_pred -------eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1900 -------QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1900 -------~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
.............|..++. ...+.++-..||.|+.|-..
T Consensus 299 ~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 299 HGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp SSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECC
T ss_pred CCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCC
Confidence 1111111111233555544 34555666789999999764
No 375
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.92 E-value=8.1e+02 Score=33.36 Aligned_cols=38 Identities=21% Similarity=0.138 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1954 RVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1954 ~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
.+.+++..++..++++-+.|+++|+|++.++.+.....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46778888889999999999999999999997765543
No 376
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=37.88 E-value=2.4e+02 Score=32.44 Aligned_cols=144 Identities=8% Similarity=-0.043 Sum_probs=82.0
Q ss_pred EEEEEECCCeEEEEECCCCeE-EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC-------CceeEEEcCCCC
Q psy8748 1838 YFVTGSVDKSCKLWDFREKKC-VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA-------DQQIATYLPPNK 1909 (2004)
Q Consensus 1838 ~LaSGS~DGsIrIWDlrs~k~-I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt-------gk~i~t~~~~~~ 1909 (2004)
..++.+.+|.|+--....... ...+. ..+.+..+........++..+..|.++-+.... |..+........
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lk-e~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~ 82 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYK-AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 82 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCC-TTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCC
Confidence 455667778777665433210 00122 233444444444455667777888877665432 111111111222
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CeeeEEEccCCCCeEEEEEc-CCCCEEEEEECCCeEEEEEC
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK-------TTHNGVLSGHENRVTSISLS-PNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t-------ge~l~tL~gHs~~VtsLaFS-PDg~~LaSgS~DGtIrIWdl 1981 (2004)
...|..+....++.+++.++..|.++...+.. +.....+.. .+.+..+... .++..++..+.+|.+..|..
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~ 161 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPV 161 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEEH
Confidence 34566664434667788899999999998732 333333332 3455555555 34567888899999888887
Q ss_pred CC
Q psy8748 1982 SN 1983 (2004)
Q Consensus 1982 st 1983 (2004)
++
T Consensus 162 ~e 163 (256)
T 1zvt_A 162 SD 163 (256)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 377
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=36.57 E-value=6.7e+02 Score=30.60 Aligned_cols=128 Identities=9% Similarity=0.095 Sum_probs=72.6
Q ss_pred ecCCeEEEEECCCCceeEEee-------------ccc----cCCeEEEEECCC----CCEEEEEECCC-eEEEEE---CC
Q psy8748 1800 SGDMKIVTWNLETGQRIHEVA-------------QAH----IGDVVSISLSPD----GQYFVTGSVDK-SCKLWD---FR 1854 (2004)
Q Consensus 1800 S~DGtI~IWDl~tg~~i~~il-------------~~h----~~~ItsLafSPd----g~~LaSGS~DG-sIrIWD---lr 1854 (2004)
...+.|.++|+.+++...... .+. ...+..|+++|+ ++.|+.....+ .++-.. ++
T Consensus 178 ~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~ 257 (381)
T 3q6k_A 178 FLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELK 257 (381)
T ss_dssp TTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHS
T ss_pred CCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhh
Confidence 356789999998876543220 010 246888999997 77777776554 233332 11
Q ss_pred CC---eEEEEEecCC---CCeEEEEEe-CCCCEEEEEECCCeEEEEEccC-C---ceeEEEcCCCCCCCeEEEEEcCCCC
Q psy8748 1855 EK---KCVQTFFGHE---ADVNSVCFH-PSGLAFATGSEDKTARLFDIRA-D---QQIATYLPPNKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1855 s~---k~I~tl~~h~---s~ItsIafS-Pdg~~LaSgS~DGtIrIWDLrt-g---k~i~t~~~~~~~s~ItsLafSPdG~ 1923 (2004)
+. ..++.+ +.. ..-..+++. .+|..+++--..+.|..|+..+ . .....+.....-.....+.+..+|.
T Consensus 258 ~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~ 336 (381)
T 3q6k_A 258 QKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGG 336 (381)
T ss_dssp STTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSC
T ss_pred CcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCe
Confidence 21 122222 222 334456675 5787777777888999999875 1 1222222222334566777766665
Q ss_pred EEEEE
Q psy8748 1924 YIFCG 1928 (2004)
Q Consensus 1924 ~LaSG 1928 (2004)
+.+..
T Consensus 337 Lwv~s 341 (381)
T 3q6k_A 337 LWFMS 341 (381)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54444
No 378
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=28.50 E-value=8.4e+02 Score=29.29 Aligned_cols=234 Identities=9% Similarity=0.036 Sum_probs=120.1
Q ss_pred ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc-------eEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEE
Q psy8748 1736 WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA-------KVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTW 1808 (2004)
Q Consensus 1736 ~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~-------k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IW 1808 (2004)
.|..++. .+.+.+....||.|..|-.......... ...... .....+..++. .....++-+.+|.|+.|
T Consensus 76 ~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~~~~~i~~va~-G~~hs~al~~~G~v~~w 151 (423)
T 3mvd_K 76 DAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLI-DLPGKALCISA-GDSHSACLLEDGRVFAW 151 (423)
T ss_dssp SEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEEC-CCSSCEEEEEE-CSSEEEEEETTSCEEEE
T ss_pred CceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEE-cCCCCEEEEEc-CcCeEEEEeCCCeEEEE
Confidence 3655554 3566777788999999976542211100 000111 11233444443 33455566789999999
Q ss_pred EC--CC-Cce--------eEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCC---------------------
Q psy8748 1809 NL--ET-GQR--------IHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK--------------------- 1856 (2004)
Q Consensus 1809 Dl--~t-g~~--------i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~--------------------- 1856 (2004)
-. .. ++. ...........|..++.. ....++-..||.|+.|-....
T Consensus 152 G~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 229 (423)
T 3mvd_K 152 GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRD 229 (423)
T ss_dssp ECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTT
T ss_pred eCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccc
Confidence 85 32 221 111111223456666654 345666678999999964321
Q ss_pred --eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce-----------eEEEcCCCCCCCeEEEEEcCCCC
Q psy8748 1857 --KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ-----------IATYLPPNKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1857 --k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~-----------i~t~~~~~~~s~ItsLafSPdG~ 1923 (2004)
.+..........|..++.... ..++.-..+|.|+.|-...... ....... ...|..++. -..
T Consensus 230 ~~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~--~~~v~~ia~--G~~ 304 (423)
T 3mvd_K 230 LLRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE--LKDIRHIAG--GQH 304 (423)
T ss_dssp TSSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC--CCSEEEEEE--CSS
T ss_pred ccCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC--CCCeEEEEc--ccC
Confidence 111111122234555554422 1233335788899986543111 0011001 234555544 345
Q ss_pred EEEEEeCCCeEEEEECCCC------------eeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1924 YIFCGSDDNNVHVWDLLKT------------THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1924 ~LaSGSsDGsIrIWDL~tg------------e~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
+.++-..||.|+.|-.... .....+..-...|..|+.... .-+.-..||.|+.|=..
T Consensus 305 ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n 373 (423)
T 3mvd_K 305 HTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSG 373 (423)
T ss_dssp EEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEECC
T ss_pred eEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCC
Confidence 5666678999999964221 112223333336777776533 44445789999999654
No 379
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=27.15 E-value=1.4e+03 Score=31.53 Aligned_cols=37 Identities=19% Similarity=0.069 Sum_probs=31.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE
Q psy8748 1912 GFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVL 1948 (2004)
Q Consensus 1912 ~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL 1948 (2004)
.+.+++..++..++++-+.|+++|||++.++.++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3445566778899999999999999999999988765
No 380
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=26.46 E-value=9e+02 Score=28.99 Aligned_cols=196 Identities=12% Similarity=0.051 Sum_probs=100.3
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEEC--C-CCce--------EEEee-CCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDT--W-TGNK--------TQVIP-LRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl--~-Tgk~--------l~ti~-~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
.|..|+.. ..+.+....||.|+.|-. . .|+. ..... .....|..++.. ..+.++...+|.|..|
T Consensus 128 ~i~~va~G--~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~w 203 (423)
T 3mvd_K 128 KALCISAG--DSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTV 203 (423)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred CEEEEEcC--cCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEe
Confidence 46566543 344555567899999974 2 2221 11111 123346666543 4566666789999999
Q ss_pred EcCCCCCCCc-----------------ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCc----------
Q psy8748 1762 DLNNRDSTGA-----------------AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQ---------- 1814 (2004)
Q Consensus 1762 Dl~t~~~~~~-----------------~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~---------- 1814 (2004)
-......... .............+..++......++.-+.+|.|+.|-.....
T Consensus 204 G~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~ 283 (423)
T 3mvd_K 204 GCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKE 283 (423)
T ss_dssp ECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCS
T ss_pred eCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCc
Confidence 7654221110 0111111112233444444433334444688999999654311
Q ss_pred eeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCC------------eEEEEEecCCCCeEEEEEeCCCCEEE
Q psy8748 1815 RIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK------------KCVQTFFGHEADVNSVCFHPSGLAFA 1882 (2004)
Q Consensus 1815 ~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~------------k~I~tl~~h~s~ItsIafSPdg~~La 1882 (2004)
............|..++.- ..+.++-..||.|+.|-.... .....+......|..|+.... +.+
T Consensus 284 ~~~~p~~~~~~~v~~ia~G--~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~ 359 (423)
T 3mvd_K 284 FALTPIKTELKDIRHIAGG--QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSY 359 (423)
T ss_dssp EEEEEEEECCCSEEEEEEC--SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEE
T ss_pred eeeeeEEcCCCCeEEEEcc--cCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEE
Confidence 1101111113456666654 345566678999999965321 111222222335666665433 444
Q ss_pred EEECCCeEEEEEccC
Q psy8748 1883 TGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1883 SgS~DGtIrIWDLrt 1897 (2004)
+-..||.|+.|-...
T Consensus 360 alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 360 AVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEETTSCEEEEECCT
T ss_pred EEcCCCCEEEECCCC
Confidence 456789999997543
No 381
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=24.92 E-value=1e+03 Score=31.03 Aligned_cols=164 Identities=12% Similarity=0.150 Sum_probs=83.7
Q ss_pred CeEEEEECCCC-CEEEEEECCCeEEEEECCCCeEEEEEecC-------CCCeEEEEEeC-CCCEEEEEECC-------Ce
Q psy8748 1826 DVVSISLSPDG-QYFVTGSVDKSCKLWDFREKKCVQTFFGH-------EADVNSVCFHP-SGLAFATGSED-------KT 1889 (2004)
Q Consensus 1826 ~ItsLafSPdg-~~LaSGS~DGsIrIWDlrs~k~I~tl~~h-------~s~ItsIafSP-dg~~LaSgS~D-------Gt 1889 (2004)
.|..++++|.. ..++++...|.|..++-. ++.-..+..+ ...|.+|+++| +.+.++++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999953 567777767777666533 3222222221 24588999998 44455554421 12
Q ss_pred EEEEEcc-CCceeEEEcCCCC-------CCCeEEEEEcCC-CCEEEEEeCCCeEEEEE-CCCC---eeeEEEcc------
Q psy8748 1890 ARLFDIR-ADQQIATYLPPNK-------NSGFTSCAVSSS-GRYIFCGSDDNNVHVWD-LLKT---THNGVLSG------ 1950 (2004)
Q Consensus 1890 IrIWDLr-tgk~i~t~~~~~~-------~s~ItsLafSPd-G~~LaSGSsDGsIrIWD-L~tg---e~l~tL~g------ 1950 (2004)
..+|.-. .|+.-........ ...+..++++|. .+.++++...|. -+|- ...| +.+..+..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~-gl~~S~DgG~tW~~~~~~~~~~~~~~ 181 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGN-GLWRSTDYGVTWSKVESFPNPGTYIY 181 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTC-CEEEESSTTSSCEECTTCCCCCCCBS
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCC-cEEEeCCCCcceecccCCCCCccccc
Confidence 4455433 3333222211110 112467889984 466777764321 1332 2222 22211111
Q ss_pred --------CCCCeEEEEEcCCC-------CEEEEEECCCeEEEE-ECCCCeEEEEEE
Q psy8748 1951 --------HENRVTSISLSPNG-------MALVTSSWDQFVKVW-QESNTIVWKVLK 1991 (2004)
Q Consensus 1951 --------Hs~~VtsLaFSPDg-------~~LaSgS~DGtIrIW-dlstg~l~k~Ik 1991 (2004)
....+..+.++|.. ..++.+..|+.-.+| ..+.|+.|+.+.
T Consensus 182 ~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~ 238 (737)
T 2cn3_A 182 DPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVP 238 (737)
T ss_dssp CTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECT
T ss_pred CcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECC
Confidence 12347888888743 256666555432244 445567777654
No 382
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=21.25 E-value=6.4e+02 Score=35.07 Aligned_cols=38 Identities=21% Similarity=0.138 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1954 RVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1954 ~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
.+.+++..++..++++-+.|+++|||++.++.+.....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556667788999999999999999999997765544
Done!