RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8748
(2004 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins
that cover a wide variety of functions including
adaptor/regulatory modules in signal transduction,
pre-mRNA processing and cytoskeleton assembly; typically
contains a GH dipeptide 11-24 residues from its
N-terminus and the WD dipeptide at its C-terminus and is
40 residues long, hence the name WD40; between GH and WD
lies a conserved core; serves as a stable propeller-like
platform to which proteins can bind either stably or
reversibly; forms a propeller-like structure with several
blades where each blade is composed of a four-stranded
anti-parallel b-sheet; instances with few detectable
copies are hypothesized to form larger structures by
dimerization; each WD40 sequence repeat forms the first
three strands of one blade and the last strand in the
next blade; the last C-terminal WD40 repeat completes the
blade structure of the first WD40 repeat to create the
closed ring propeller-structure; residues on the top and
bottom surface of the propeller are proposed to
coordinate interactions with other proteins and/or small
ligands; 7 copies of the repeat are present in this
alignment.
Length = 289
Score = 272 bits (697), Expect = 2e-82
Identities = 100/298 (33%), Positives = 151/298 (50%), Gaps = 10/298 (3%)
Query: 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFA 1743
+++LKGH V V +S D + +GS DG + +WD TG + + + V VA +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG-D 1802
G ++A G D ++DL + +R L G+ ++SS F D +L+ S D
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETG------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRD 114
Query: 1803 MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF 1862
I W++ETG+ + + H V S++ SPDG + + S D + KLWD R KCV T
Sbjct: 115 KTIKVWDVETGKCLT-TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL 173
Query: 1863 FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922
GH +VNSV F P G + S D T +L+D+ + + T +G S A S G
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL--RGHENGVNSVAFSPDG 231
Query: 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980
+ GS+D + VWDL LSGH N VTS++ SP+G L + S D +++W
Sbjct: 232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 151 bits (382), Expect = 1e-38
Identities = 97/313 (30%), Positives = 153/313 (48%), Gaps = 15/313 (4%)
Query: 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGS-LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
++L+GH V S+ +S D + SGS LDG + +WD TG + + V S+AF
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206
Query: 1743 AQSGNF-VACGGMDNMCTVYDLNNRDSTGAAKVIRELL-GYEGFLSSCRFIDDTTLLTGS 1800
+ G +A G D ++DL+ K++R L G+ + S D + L +GS
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLST------GKLLRSTLSGHSDSVVSSFSPDGSLLASGS 260
Query: 1801 GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQ 1860
D I W+L + + H V+S++ SPDG+ +GS D + +LWD K +
Sbjct: 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320
Query: 1861 --TFFGHEADVNSVCFHPSGLAFATG-SEDKTARLFDIRADQQIATYLPPNKNSGFTSCA 1917
T GHE V+S+ F P G +G S+D T RL+D+R + + +S S +
Sbjct: 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL---KTLEGHSNVLSVS 377
Query: 1918 VSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVK 1977
S GR + GS D V +WDL + L GH +RVTS+ SP+G +L + S D ++
Sbjct: 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437
Query: 1978 VWQESNTIVWKVL 1990
+W ++
Sbjct: 438 LWDLKTSLKSVSF 450
Score = 142 bits (358), Expect = 2e-35
Identities = 82/335 (24%), Positives = 147/335 (43%), Gaps = 9/335 (2%)
Query: 1666 KLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN 1725
+++ + S + K+ + + + S+ S ++ D + + D
Sbjct: 1 LVDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDL---- 56
Query: 1726 KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL 1785
+ ++ + S+AF+ G + G D ++DL+N + +
Sbjct: 57 SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116
Query: 1786 SSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-V 1844
S + L + S D + W+L T ++ + H V S++ SPDG+ +GS +
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSL 176
Query: 1845 DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIRADQQIAT 1903
D + KLWD R K + T GH V+S+ F P G L A+GS D T RL+D+ + + +
Sbjct: 177 DGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236
Query: 1904 YLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL-KTTHNGVLSGHENRVTSISLSP 1962
L + +S +S S G + GS D + +WDL ++ LSGH + V S++ SP
Sbjct: 237 TLSGHSDSVVSS--FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294
Query: 1963 NGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEK 1997
+G L + S D V++W + L + E
Sbjct: 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329
Score = 136 bits (343), Expect = 1e-33
Identities = 93/302 (30%), Positives = 140/302 (46%), Gaps = 14/302 (4%)
Query: 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD-TWTGNKTQVIPLRSAWVMSVAFAQSGN 1747
++K+ G+S S SLDG + +WD + G + + S V S+AF+ G
Sbjct: 109 DSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK 168
Query: 1748 -FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMK 1804
+ +D ++DL K + L G+ +SS F D + +GS D
Sbjct: 169 LLASGSSLDGTIKLWDLRTG------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222
Query: 1805 IVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR-EKKCVQTFF 1863
I W+L TG+ + H VVS S SPDG +GS D + +LWD R ++T
Sbjct: 223 IRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281
Query: 1864 GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR 1923
GH + V SV F P G A+GS D T RL+D+ + +++ +S + S G
Sbjct: 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS 341
Query: 1924 YIFCG-SDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982
+ G SDD + +WDL L GH N V S+S SP+G + + S D V++W S
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLS 400
Query: 1983 NT 1984
Sbjct: 401 TG 402
Score = 136 bits (343), Expect = 1e-33
Identities = 104/363 (28%), Positives = 165/363 (45%), Gaps = 22/363 (6%)
Query: 1645 KKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDS 1704
K EL ++ +++ + + + + L+GH + + S+ +S D
Sbjct: 18 KSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDG 77
Query: 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVA----FAQSGN--FVACGGMDNMC 1758
+SGS DG + +WD + + L SV+ + GN +A +D
Sbjct: 78 ELLLSGSSDGTIKLWD-LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136
Query: 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLL--TGSGDMKIVTWNLETGQRI 1816
++DL+ K+IR L G+ ++S F D LL S D I W+L TG+ +
Sbjct: 137 KLWDLSTP-----GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191
Query: 1817 HEVAQAHIGDVVSISLSPDGQ-YFVTGSVDKSCKLWDFREKKCVQ-TFFGHEADVNSVCF 1874
H V S++ SPDG +GS D + +LWD K ++ T GH V S F
Sbjct: 192 S-TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SF 249
Query: 1875 HPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNV 1934
P G A+GS D T RL+D+R+ + L + +S S A S G+ + GS D V
Sbjct: 250 SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH-SSSVLSVAFSPDGKLLASGSSDGTV 308
Query: 1935 HVWDL--LKTTHNGVLSGHENRVTSISLSPNGMALVTS-SWDQFVKVWQESNTIVWKVLK 1991
+WDL K + L GHE V+S+S SP+G LV+ S D +++W K L+
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 1992 VYN 1994
++
Sbjct: 369 GHS 371
Score = 120 bits (301), Expect = 3e-28
Identities = 89/271 (32%), Positives = 136/271 (50%), Gaps = 14/271 (5%)
Query: 1684 PKKSLKGHINKVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGN-KTQVIPLRSAWVMSVA 1741
P +L GH + V+S+ +S D SGS DG + +WD TG + S V+S +
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-S 248
Query: 1742 FAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGS 1800
F+ G+ +A G D ++DL + ++ ++R L G+ + S F D L +GS
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRS-----SSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303
Query: 1801 GDMKIVTWNLETGQRIHEVA-QAHIGDVVSISLSPDGQYFVTG-SVDKSCKLWDFREKKC 1858
D + W+LETG+ + + + H G V S+S SPDG V+G S D + +LWD R K
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363
Query: 1859 VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAV 1918
++T GH +V SV F P G ++GS D T RL+D+ + S TS
Sbjct: 364 LKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNL--DGHTSRVTSLDF 420
Query: 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS 1949
S G+ + GS DN + +WDL + + S
Sbjct: 421 SPDGKSLASGSSDNTIRLWDLKTSLKSVSFS 451
Score = 99.0 bits (245), Expect = 3e-21
Identities = 75/234 (32%), Positives = 117/234 (50%), Gaps = 10/234 (4%)
Query: 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDT-WTGNKTQVIPLRSAWVMSVAFA 1743
+ +L GH + V S +S D SGS DG + +WD + + + + S+ V+SVAF+
Sbjct: 235 RSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293
Query: 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLL--TGSG 1801
G +A G D ++DL L G+EG +SS F D +LL GS
Sbjct: 294 PDGKLLASGSSDGTVRLWDLETGKL----LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 1802 DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQT 1861
D I W+L TG+ + + +V+S+S SPDG+ +GS D + +LWD ++
Sbjct: 350 DGTIRLWDLRTGKPLKTLE--GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRN 407
Query: 1862 FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTS 1915
GH + V S+ F P G + A+GS D T RL+D++ + ++ P K S
Sbjct: 408 LDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKS 461
Score = 51.2 bits (121), Expect = 4e-06
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 1668 EDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG-SLDGKLIIWDTWTGNK 1726
D T + D KL+ +LKGH V+S+ +S D VSG S DG + +WD K
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL-RTGK 362
Query: 1727 TQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786
+ V+SV+F+ G V+ G D ++DL+ ++R L G+ ++
Sbjct: 363 PLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST------GSLLRNLDGHTSRVT 416
Query: 1787 SCRF-IDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845
S F D +L +GS D I W+L+T + S+S SPDG+ + S D
Sbjct: 417 SLDFSPDGKSLASGSSDNTIRLWDLKT-------------SLKSVSFSPDGKVLASKSSD 463
Query: 1846 KS 1847
S
Sbjct: 464 LS 465
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 53.1 bits (128), Expect = 5e-09
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894
K ++T GH V SV F P G A+GS+D T R++D
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 46.2 bits (110), Expect = 1e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 1821 QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWD 1852
+ H G V S++ SPDG +GS D + ++WD
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 46.2 bits (110), Expect = 1e-06
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD 1720
++LKGH V SV +S D SGS DG + +WD
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 45.8 bits (109), Expect = 2e-06
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 1946 GVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
L GH VTS++ SP+G L + S D V+VW
Sbjct: 5 RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 38.5 bits (90), Expect = 7e-04
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 1910 NSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938
TS A S G + GSDD V VWD
Sbjct: 11 TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 36.9 bits (86), Expect = 0.003
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 1724 GNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762
G + + + V SVAF+ GN +A G D V+D
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are permuted
with respect to the structural repeats (blades) of the
beta propeller domain.
Length = 40
Score = 52.3 bits (126), Expect = 1e-08
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894
+ ++T GH V SV F P G A+GS+D T +L+D
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 46.9 bits (112), Expect = 9e-07
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD 1720
K+LKGH V SV +S D ++ SGS DG + +WD
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 45.8 bits (109), Expect = 2e-06
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 1812 TGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWD 1852
+G+ + + + H G V S++ SPDG+Y +GS D + KLWD
Sbjct: 1 SGELLKTL-KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 44.6 bits (106), Expect = 5e-06
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1947 VLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
L GH VTS++ SP+G L + S D +K+W
Sbjct: 7 TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 38.1 bits (89), Expect = 0.001
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1910 NSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938
TS A S G+Y+ GSDD + +WD
Sbjct: 12 TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 35.8 bits (83), Expect = 0.006
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 1723 TGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762
+G + + + V SVAF+ G ++A G D ++D
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
>gnl|CDD|227546 COG5221, DOP1, Dopey and related predicted leucine zipper
transcription factors [Transcription].
Length = 1618
Score = 48.8 bits (116), Expect = 4e-05
Identities = 28/151 (18%), Positives = 71/151 (47%), Gaps = 5/151 (3%)
Query: 1273 VTYGSQEKERVNTLLTTLMYNVI-PYLKNHSQRNAVSFHACSTLLASLSSYQYTRKAWKK 1331
+ +++ + +++ ++I P +K + + + + LLA LS K+W+K
Sbjct: 1285 IVLERLTEDKFQRTVLSIVNSLITPIIKLVNSSLGLKNYGLN-LLAVLSERGLEVKSWRK 1343
Query: 1332 DAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMTRVSLSQSNSLSLFSNKEQ 1391
+ +++ D LF L S++ ++ ++P+ DL+ R S ++ F +++
Sbjct: 1344 EFVEIFNDLDLFIYGSDQLHKKSSLMRKVVVEDPSILNDLIVR---LDSGLITFFVSQDS 1400
Query: 1392 EYEQRAQLLKKLAFVILCSETDQFHKHIPEI 1422
+ + LK+++++I S D F ++
Sbjct: 1401 DANNKTLNLKRISYLIFSSPYDYFLGFSLKL 1431
Score = 31.4 bits (71), Expect = 6.0
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 1569 LLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMK 1628
LLA LS K+W+K+ +++ D LF L S++ ++ ++P+ DL+++
Sbjct: 1327 LLAVLSERGLEVKSWRKEFVEIFNDLDLFIYGSDQLHKKSSLMRKVVVEDPSILNDLIVR 1386
Query: 1629 PTSSINIYLKLQTAEL 1644
S + + Q ++
Sbjct: 1387 LDSGLITFFVSQDSDA 1402
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 46.2 bits (109), Expect = 2e-04
Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 17/165 (10%)
Query: 1688 LKGHINKVNSVHYS-GDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF-AQS 1745
+K H +V S+ YS D SGS DG + +W G I + A + V F ++S
Sbjct: 571 MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSES 629
Query: 1746 GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKI 1805
G +A G D+ YDL N + ++G+ +S RF+D +TL++ S D +
Sbjct: 630 GRSLAFGSADHKVYYYDLRNPKLP-----LCTMIGHSKTVSYVRFVDSSTLVSSSTDNTL 684
Query: 1806 VTWNLE-TGQRIHE------VAQAHIGDVVSISLSPDGQYFVTGS 1843
W+L + I+E + ++ + V +S+S DG Y TGS
Sbjct: 685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS-DG-YIATGS 727
Score = 42.8 bits (100), Expect = 0.002
Identities = 60/262 (22%), Positives = 108/262 (41%), Gaps = 19/262 (7%)
Query: 1734 SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN--RDSTGAAKVIRELLGYEGFLSSC--R 1789
S V ++ F + G F A G++ +++ + +D + EL C
Sbjct: 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNS 542
Query: 1790 FIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL-SPDGQYFVTGSVDKSC 1848
+I + + + + + + W++ Q + E+ + H V SI S D +GS D S
Sbjct: 543 YI-KSQVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSV 600
Query: 1849 KLWDFREKKCVQTFFGHEADVNSVCF-HPSGLAFATGSEDKTARLFDIRADQ-QIATYLP 1906
KLW + + T +A++ V F SG + A GS D +D+R + + T +
Sbjct: 601 KLWSINQGVSIGT-IKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG 659
Query: 1907 PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL------LKTTHNGVLSGHENRVTSISL 1960
+K + SS+ + S DN + +WDL + T GH N + L
Sbjct: 660 HSKTVSYVRFVDSST---LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL 716
Query: 1961 SPNGMALVTSSWDQFVKVWQES 1982
S + + T S V V+ ++
Sbjct: 717 SVSDGYIATGSETNEVFVYHKA 738
Score = 37.4 bits (86), Expect = 0.085
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 9/149 (6%)
Query: 1841 TGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIRADQ 1899
+ + + ++WD + V HE V S+ + + A+GS+D + +L+ I
Sbjct: 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609
Query: 1900 QIATYLPPNKNSGFTSCAV--SSSGRYIFCGSDDNNVHVWDLLKTTHN-GVLSGHENRVT 1956
I T K C S SGR + GS D+ V+ +DL + GH V+
Sbjct: 610 SIGTI----KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS 665
Query: 1957 SISLSPNGMALVTSSWDQFVKVWQESNTI 1985
+ + LV+SS D +K+W S +I
Sbjct: 666 YVRFV-DSSTLVSSSTDNTLKLWDLSMSI 693
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 39.9 bits (93), Expect = 0.015
Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 9/128 (7%)
Query: 1778 LLGYEGFLSSCRF--IDDTTLLTGSGDMKIVTWNLETGQRIHEVA------QAHIGDVVS 1829
LLG EG + F D L T S D I+ W + ++ Q H V
Sbjct: 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI 130
Query: 1830 ISLSPDGQ-YFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK 1888
+S P + D +WD K V+ H + S+ ++ G T S+DK
Sbjct: 131 VSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK 190
Query: 1889 TARLFDIR 1896
+ D R
Sbjct: 191 KLNIIDPR 198
Score = 34.1 bits (78), Expect = 0.89
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 1864 GHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRADQQIATYLPP-------NKNSGFTS 1915
G E + V F+P T SED T + I + P K G S
Sbjct: 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132
Query: 1916 CAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQF 1975
S+ G+D V+VWD+ + V+ H +++TS+ + +G L T+S D+
Sbjct: 133 FHPSAMNVLASAGAD-MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK 191
Query: 1976 VKV 1978
+ +
Sbjct: 192 LNI 194
Score = 33.3 bits (76), Expect = 1.7
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 27/164 (16%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855
L + DM + W++E G+ + EV + H + S+ + DG T S DK + D R+
Sbjct: 141 LASAGADMVVNVWDVERGKAV-EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD 199
Query: 1856 KKCVQTFFGHEADVNSVCF--HPSGLAFATG---SEDKTARLFDIRA----------DQQ 1900
V + H + + C L G S+ + L+D R DQ
Sbjct: 200 GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS 259
Query: 1901 IATYLP-----------PNKNSGFTSCAVSSSGRYIFCGSDDNN 1933
A ++P +K G C + R FC S +
Sbjct: 260 SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSV 303
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 39.1 bits (91), Expect = 0.031
Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 12/150 (8%)
Query: 461 KEATPPPCMKDSLDSASVETAETISLSNTSQGHQSEDSPLPSNKNLD-SPLPSNKNLDSP 519
++ P + + + + + + S +S D P++ +L +P + DS
Sbjct: 75 SFSSSPKLFQRRNSAGPITHSPSATSSTSSLNSNDGDQFSPASDSLSFNPSSTQSRKDSG 134
Query: 520 LPSNKNLDSPLPSNKNLDSPLPSNKNLDSPLP---SNKNLDSPLPSNKNLDSPLPSNKNP 576
P K + LPS+ + P ++ N N +PS +
Sbjct: 135 PGDG------SPVQKRKNPLLPSSSTHGTHPPIVFTDNNGSHAGAPNARSRKEIPSLGSQ 188
Query: 577 NSPLPNNKNVSLRATSSAGN--SVESTHAH 604
+ LP+ ++S N S S +
Sbjct: 189 SMQLPSPHFRQKFSSSDTSNGFSYPSIRKN 218
Score = 34.1 bits (78), Expect = 1.1
Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 10/147 (6%)
Query: 466 PPCMKDSLDSASVETAETISLSNTSQGHQSEDSPLPSNKNLDSPLPSNKNLDSPLPSNKN 525
P +++ D+ + + S + GHQ S S K + SP ++
Sbjct: 43 PISIRNGADNDIINSESKESFGKYALGHQIFSSFSSSPKLFQRRNSAGPITHSPSATSST 102
Query: 526 LDSPLPSNKNLDSPLPSNKNLD-SPLPSNKNLDS----PLPSNKNLDSPLPSNKNPNSPL 580
S ++ + SP ++ +L +P + DS P K + LPS+ +
Sbjct: 103 -SSLNSNDGDQFSP--ASDSLSFNPSSTQSRKDSGPGDGSPVQKRKNPLLPSSSTHGTHP 159
Query: 581 P--NNKNVSLRATSSAGNSVESTHAHV 605
P N A + S + +
Sbjct: 160 PIVFTDNNGSHAGAPNARSRKEIPSLG 186
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 38.4 bits (89), Expect = 0.043
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 460 EKEATPPPCMKDSL-----DSASVETAETISLSNTSQ-----GHQSEDSPLPSNKNLDSP 509
E E P D++ +++S ET ++S S + Q G S ++ P + SP
Sbjct: 2 ETETKEPEDPADNVNDVVSEASSPETDLSLSPSQSEQNIENDGQNSPETQSPLTELQPSP 61
Query: 510 LPSNKNLDSPLPSNKNLDS---PLPSNKNLDSPLPSNK 544
LP N LD+P+ ++ +S P N N P P K
Sbjct: 62 LPPNTTLDAPVSDSQGDESSSEQQPQNPNSTEPAPPPK 99
Score = 34.2 bits (78), Expect = 0.82
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 477 SVETAETISLSNTSQGHQSEDSPLPSNKNLDSPLPSNKNLDSPLPSNKNLDSPLPSNKNL 536
ET E ++ SE S ++ +L SP S +N+++ N + ++ P +
Sbjct: 2 ETETKEPEDPADNVNDVVSEASSPETDLSL-SPSQSEQNIEND-GQN-SPETQSPLTELQ 58
Query: 537 DSPLPSNKNLDSPLPSNKNLDSPLPSNKNLDSPLPSNKNPNSPLP 581
SPLP N LD+P+ ++ +S S +NPNS P
Sbjct: 59 PSPLPPNTTLDAPVSDSQGDES---------SSEQQPQNPNSTEP 94
>gnl|CDD|221734 pfam12722, Hid1, High-temperature-induced dauer-formation protein.
Hid1 (high-temperature-induced dauer-formation protein 1)
represents proteins of approximately 800 residues long
and is conserved from fungi to humans. It contains up to
seven potential transmembrane domains separated by
regions of low complexity. Functionally it might be
involved in vesicle secretion or be an inter-cellular
signalling protein or be a novel insulin receptor.
Length = 813
Score = 37.3 bits (87), Expect = 0.091
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 1273 VTYGSQEKERVNTLLTTLMYNVIPYLKNHSQRNAVSFHACSTLLASLSSY 1322
+T G + +++ L ++YN+ PYL +S++A S LL S +
Sbjct: 477 ITTGKKRLQQLFPCLLEILYNLSPYLGG------LSYNASSKLLHLFSKF 520
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1
family).
Length = 619
Score = 36.8 bits (85), Expect = 0.15
Identities = 23/127 (18%), Positives = 33/127 (25%), Gaps = 8/127 (6%)
Query: 469 MKDSLDSASVETAETISLSNTSQGHQSEDSPLPSNKNLDSPLPSNKNLDSPLPSNKNLDS 528
M+ S T S + S L NL S + S N
Sbjct: 457 MEPPYGSTESSVPSTPSTRRNDRNITSNTPSLKRTPNLTKSSLSQEAS-LISKSTGNTHK 515
Query: 529 PLPSNK-NLDSPLPSNKNLDSPLPSNKNLDSPLPS-NKNLDSPLPSNKNPNSPLPNNKNV 586
+ LP+ S NL + N + D P + N SP + V
Sbjct: 516 HSTPRRLTTLPKLPAASR-----SSKGNLIRSGANGNASSDLSSPGSINSKSPEHSVPLV 570
Query: 587 SLRATSS 593
+
Sbjct: 571 RVFDIHL 577
>gnl|CDD|220253 pfam09469, Cobl, Cordon-bleu domain. The Cordon-bleu protein domain
is highly conserved among vertebrates. The sequence
contains three repeated lysine, arginine, and
proline-rich regions, the KKRAP motif. The exact function
of the protein is unknown but it is thought to be
involved in mid-brain neural tube closure. It is
expressed specifically in the node.
Length = 349
Score = 36.1 bits (83), Expect = 0.17
Identities = 29/129 (22%), Positives = 38/129 (29%), Gaps = 8/129 (6%)
Query: 1460 SNSSSDKDSD-KSFFFFFFFFGSSLLSLLDAPESQSSPTSPVPNYRASSTPKTSG--SKS 1516
SN S + + K F FF AP S + S P SG KS
Sbjct: 216 SNLSDMTEKEKKGFLGFFQRSKKKRDQCATAPASPLVNKRTFTLGNSISLPYISGVGPKS 275
Query: 1517 VLKKRWRKPRTPNNYNVQGDASNPADT-ADIPTNAPE---PCKEQRNAVSFHACSTLLAS 1572
KKR R P P + P + P + R S+L
Sbjct: 276 EPKKR-RAPPPPMPTSQSVPQDLPPSCIVKSMSVDETDKTPEEVGRVRAGSLQLSSLSGG 334
Query: 1573 LSSYQYTRK 1581
S Q ++
Sbjct: 335 QSDLQKKKR 343
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 35.7 bits (82), Expect = 0.26
Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 8/147 (5%)
Query: 435 DKHGGGEDDKTGDGSGE-ESGPGDGKEKEATPPPCMKDSLDSASVETAETISLSNTSQGH 493
+ E++K + G + G K K DS + ++ + S
Sbjct: 318 EDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVT 377
Query: 494 QSEDSPLPSNKNLDSPLPSNKNLDSPLPSNKNLDSPLPSNKNLDSPLPSNKNLDSPLPSN 553
+ + +DS N SP S SP +K + +P+
Sbjct: 378 AKKQKEPKKEEPVDS------NPSSPGNSGPARPSPESKDKGKRKAANEVSKSPASVPAK 431
Query: 554 K-NLDSPLPSNKNLDSPLPSNKNPNSP 579
K ++ S+ +P + + +S
Sbjct: 432 KLKTENAPKSSSGKSTPQTFSGSKSSS 458
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 31.7 bits (72), Expect = 0.34
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1504 RASSTPKTSGSKSVLKKRWRKPRTPNNYN 1532
A P T K K+ RKP+ P N+N
Sbjct: 8 IAKKKPGTEQKKKKSAKKKRKPKLPKNFN 36
>gnl|CDD|149939 pfam09055, Sod_Ni, Nickel-containing superoxide dismutase. Nickel
containing superoxide dismutase (NiSOD) is a
metalloenzyme containing a hexameric assembly of
right-handed 4-helix bundles of up-down-up-down topology
with an N-terminal His-Cys-X-X-Pro-Cys-Gly-X-Tyr motif
that chelates the active site Ni ions. NiSOD catalyzes
the disproportionation of superoxide to peroxide and
molecular oxygen through alternate oxidation and
reduction of Ni, protecting cells from the toxic
products of aerobic metabolism.
Length = 128
Score = 33.5 bits (77), Expect = 0.39
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 602 HAHVLLYCGVYDSARTQYTLQTIRNMI 628
AH L CG+YD A+ + T+ M
Sbjct: 6 SAHCDLPCGIYDPAQARIAALTVLKMT 32
>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A.
This is a family of eukaryotic translation initiation
factors.
Length = 194
Score = 34.2 bits (79), Expect = 0.44
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 1796 LLTGSGDM--KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS------VDKS 1847
LL G G++ +I W++ + ++A A + SPDG+YF+T + VD
Sbjct: 116 LLAGFGNLAGQIEFWDV---KNKKKIATAEASNATDCEWSPDGRYFLTATTSPRLRVDNG 172
Query: 1848 CKLWDF 1853
K+W +
Sbjct: 173 FKIWHY 178
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 34.5 bits (79), Expect = 0.62
Identities = 27/196 (13%), Positives = 52/196 (26%), Gaps = 10/196 (5%)
Query: 449 SGEESGPGDGKEKEATPPPCMKDSLDSASVETAETISLSNTSQGHQSEDSPLPSNKNLDS 508
+ +SGPG P K A + I + S + + + S
Sbjct: 408 TPPDSGPGSNVSSRRVGTPGSKSDRVGAVLLRRMNIKPTLASIPDEKPSNISVFEDSETS 467
Query: 509 PLPSNKNLDSPLPSNKNLDSPLPSNKNLDSPLPSNKNLDSPLPSNKNL--DSPL---PSN 563
P S D P LP+N + + + PL +++ S
Sbjct: 468 PNSSTLLRDPPPKKCGEESGHLPNNPFFNKLKLTL-SSIPPLSPRQSIITLPTPSRPASR 526
Query: 564 KNLDSPLPSNKNPNSPLPNNKNVSLRATSSAG----NSVESTHAHVLLYCGVYDSARTQY 619
+ S + + + P + +AG SV + + +
Sbjct: 527 ISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAGLSFNRSVSDIEGERIGRYNLLPTRIPAL 586
Query: 620 TLQTIRNMILPNSRAF 635
+ S +
Sbjct: 587 PFKAESTTSSRRSSSL 602
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 34.2 bits (78), Expect = 0.92
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 1928 GSDDNNVHVWDLLKTTHN--------GVLSGHENRVTSISLSP-NGMALVTSSWDQFVKV 1978
GS+D + VW++ + +L GH+ +++ I +P N + +S +D FV +
Sbjct: 93 GSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI 152
Query: 1979 WQESN 1983
W N
Sbjct: 153 WDIEN 157
>gnl|CDD|218825 pfam05956, APC_basic, APC basic domain. This region of the APC
family of proteins is known as the basic domain. It
contains a high proportion of positively charged amino
acids and interacts with microtubules.
Length = 359
Score = 33.6 bits (76), Expect = 0.97
Identities = 35/150 (23%), Positives = 49/150 (32%), Gaps = 18/150 (12%)
Query: 464 TPPPCMKDSLDSASVET-AETISLSNTSQGHQSEDSPLPSNKNLDSPLP-------SNKN 515
PP D + + S S SE + L +P S+ +
Sbjct: 26 KGPPLKTQPSDPPKSPSPGQQRSRSLHRPAKPSELAELSPPPRSATPPARLAKTPSSSSS 85
Query: 516 LDS----PLPSNKNLDSPLPSNKNLDSPLPSNKNLDSPL---PSNKNLDSPLPSNKNLDS 568
S PLP + +N P P N P P+ L S +K S
Sbjct: 86 QTSTPSQPLPRPLPRPTQSAG-RNSILPGPGNSLSQVPRTSSPARALLASSGSQHKTQKS 144
Query: 569 P--LPSNKNPNSPLPNNKNVSLRATSSAGN 596
P +P +NP P P +KN S R G+
Sbjct: 145 PVRIPFMQNPAKPPPLSKNASSRPRPEPGS 174
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 33.3 bits (76), Expect = 1.2
Identities = 29/150 (19%), Positives = 45/150 (30%), Gaps = 7/150 (4%)
Query: 443 DKTGDGSGEESGPGDGKEKEATPP-PCMKDSLDSASVETAETISLSNTSQGHQSEDSPLP 501
+ T G PG + + P + S DS + + +++ +E S P
Sbjct: 200 EVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMD---TEKSSAP 256
Query: 502 SNKNLDSPLPSNKNLDSP-LPSNKNLDSPLPSNKNLDSPLPSNKNLDSPLPSNKNLDSPL 560
+ P K P S + +L SP P PL
Sbjct: 257 KPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPK-AESPKPL 315
Query: 561 PSNKNLDSPLPSNK-NPNSPLPNNKNVSLR 589
S S + P SP N+ +LR
Sbjct: 316 ASPGKSPRDPLSPRPKPQSPPVNDFRANLR 345
>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like
protein in neurons (Rin) and Ras-related protein which
interacts with calmodulin (Ric). Rit (Ras-like protein
in all tissues), Rin (Ras-like protein in neurons) and
Ric (Ras-related protein which interacts with calmodulin)
form a subfamily with several unique structural and
functional characteristics. These proteins all lack a the
C-terminal CaaX lipid-binding motif typical of Ras family
proteins, and Rin and Ric contain calmodulin-binding
domains. Rin, which is expressed only in neurons, induces
neurite outgrowth in rat pheochromocytoma cells through
its association with calmodulin and its activation of
endogenous Rac/cdc42. Rit, which is ubiquitously
expressed in mammals, inhibits growth-factor
withdrawl-mediated apoptosis and induces neurite
extension in pheochromocytoma cells. Rit and Rin are both
able to form a ternary complex with PAR6, a cell
polarity-regulating protein, and Rac/cdc42. This ternary
complex is proposed to have physiological function in
processes such as tumorigenesis. Activated Ric is likely
to signal in parallel with the Ras pathway or stimulate
the Ras pathway at some upstream point, and binding of
calmodulin to Ric may negatively regulate Ric activity.
Length = 172
Score = 31.4 bits (71), Expect = 2.9
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 1355 SIVDNLMSQEPATFRDLMTRVSLSQSNSLSLFSNKEQEYEQR 1396
S+ D QE + F++L+TRV L++ L L NK +QR
Sbjct: 82 SVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQQR 123
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 32.0 bits (74), Expect = 3.7
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 1637 LKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMP 1675
L + ELK+E+ L E + + + +LE++ +P
Sbjct: 71 LIAEVKELKEEIKAL-----EAELDELEAELEELLLRIP 104
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1. This protein
family shows weak but suggestive similarity to
translation initiation factor SUI1 and its prokaryotic
homologs.
Length = 173
Score = 31.0 bits (70), Expect = 3.9
Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 391 AENCIASGDLEVSTP------ADEYFKPLGTKSSSQTVIERVLDEMCEYVDKHGGGEDDK 444
E C SGDL+ D Y K GT S + + E E GE D
Sbjct: 14 PEYCEFSGDLKRCKVWLSENAPDLYAKLYGTDSPTAEAEAVTIGEAQE-----EKGEKDL 68
Query: 445 TGDGSGEESGPGDGKEK 461
G +E+ G K+K
Sbjct: 69 LGIQKAQEAREGGKKKK 85
>gnl|CDD|147601 pfam05505, Ebola_NP, Ebola nucleoprotein. This family consists of
Ebola and Marburg virus nucleoproteins. These proteins
are responsible for encapsidation of genomic RNA. It has
been found that nucleoprotein DNA vaccines can offer
protection from the virus.
Length = 717
Score = 31.9 bits (72), Expect = 5.1
Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 17/163 (10%)
Query: 458 GKEKEATPPPCMKDSLDSASVETAETISLSNTSQGHQSEDSPLPSNKNLDS---PLPSNK 514
++ PPP + AS L+N +Q + ED L +
Sbjct: 494 ERQGIPEPPPGSHQPGNRASQ------DLNNNNQ--KQEDESTNPIGKTSLRYQELTPVQ 545
Query: 515 NLDSPLPSNKNLDSPLPSNKNLDSPLPSNKNLDSPLPSNKNLDSPLPSNKNLDSPLPSN- 573
D P + DS LP ++ D P N+ + +P+ ++ +P
Sbjct: 546 EEDEPEDQTDDDDSSLPPLESDDDPGSDNE--QGVDLTEVAPPAPVYRDEKEQDEIPHPA 603
Query: 574 KNPNSPLPNNKNVS---LRATSSAGNSVESTHAHVLLYCGVYD 613
+NP P + NV LR+ S +E T+ H+L G +D
Sbjct: 604 QNPQDPTGSIGNVDSDILRSNSKPSAPLEETYMHLLRTQGPFD 646
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 31.0 bits (70), Expect = 7.4
Identities = 26/143 (18%), Positives = 44/143 (30%), Gaps = 13/143 (9%)
Query: 466 PPCMKDSLDSASVETAETISLSNTSQGHQSEDSPLPSNKNLDSPLPSNKNLDSPLPSNKN 525
P +L E +E S TS L +N +K S
Sbjct: 202 PKEENHTLSVTDKEKSEASSKGLTSTK------ELVPVQNSGGNHSLSK---SSNSQTPE 252
Query: 526 LDSPLPSNKNLDSPLPSNKNLDSPLPSNKNLDSPLPS----NKNLDSPLPSNKNPNSPLP 581
L+ + S + ++ +K+ DS L + + + PS+ + N
Sbjct: 253 LEYSEKGKDHHHSHNHQHHSIGINNHHSKHADSKLQTIEVIENHSNKSRPSSSSTNGSKE 312
Query: 582 NNKNVSLRATSSAGNSVESTHAH 604
N S A S G+ + H
Sbjct: 313 TTSNSSSAAAGSIGSKSSKSAKH 335
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 30.7 bits (69), Expect = 7.9
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 424 ERVLDEMCEYVDKHGGGEDDKTGDGSGEESGPGDGKEKEATPPPCMKDSLDSASVETAET 483
+ +E E + GED D GE G+E+E ++ +E
Sbjct: 206 RELNEEEEEEAEGSDDGEDV--VDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEE 263
Query: 484 ISLSNTS 490
+ +N
Sbjct: 264 VPRNNEE 270
>gnl|CDD|113995 pfam05244, Brucella_OMP2, Brucella outer membrane protein 2. This
family consists of several outer membrane proteins (2a
and 2b) from brucella bacteria. Brucellae are
Gram-negative, facultative intracellular bacteria that
can infect many species of animals and man.
Length = 240
Score = 30.6 bits (68), Expect = 8.2
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG-DMKIVTWNLETGQRIHEVAQA 1822
++R++ A + + +L G G +DD +TG G + + N ET + ++ +
Sbjct: 116 HSREAVSAGEGVGDLAGAVGASRDHVIVDDIAEVTGEGMEFGFIDTNAETTEL--DICEL 173
Query: 1823 HIG 1825
H G
Sbjct: 174 HDG 176
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.129 0.376
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 97,333,696
Number of extensions: 9349805
Number of successful extensions: 6322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6218
Number of HSP's successfully gapped: 69
Length of query: 2004
Length of database: 10,937,602
Length adjustment: 111
Effective length of query: 1893
Effective length of database: 6,014,308
Effective search space: 11385085044
Effective search space used: 11385085044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (29.6 bits)