BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy875
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V +D G+ PLH AA GH +IV+ L+ AGAD
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N K +D G+ PLH AA GH +IV+ L+ AGA+V+
Sbjct: 107 NAKDKD--GYTPLHLAAREGHLEIVEVLLKAGADVN 140
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V +D G+ PLH AA GH +IV+ L+ AGAD N K +D G+ PLH A
Sbjct: 30 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD--GYTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A GH +IV+ L+ AGA+V+
Sbjct: 88 AREGHLEIVEVLLKAGADVN 107
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N K +D G+ PLH AA GH +IV+ L+ AGA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGADVN 74
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL 437
G T LH+AA G+L +V+ LLK G V QD G + ++G+ D+ + L
Sbjct: 113 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V +D G+ PLH AA GH +IV+ L+ AGAD
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 94
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N K +D G+ PLH AA GH +IV+ L+ AGA+V+
Sbjct: 95 NAKDKD--GYTPLHLAAREGHLEIVEVLLKAGADVN 128
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
AA G V+ L+ G V +D G+ PLH AA GH +IV+ L+ AGAD N K +D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD- 67
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAEVS 480
G+ PLH AA GH +IV+ L+ AGA+V+
Sbjct: 68 -GYTPLHLAAREGHLEIVEVLLKAGADVN 95
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N K +D G+ PLH AA GH +IV+ L+ AGA+V+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGADVN 62
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
G T LH+AA G+L +V+ LLK G V QD G P A ++G+ DI + L A
Sbjct: 101 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V +D G+ PLH AA GH +IV+ L+ AGAD
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 94
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N K +D G+ PLH AA GH +IV+ L+ AGA+V+
Sbjct: 95 NAKDKD--GYTPLHLAAREGHLEIVEVLLKAGADVN 128
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V +D G+ PLH AA GH +IV+ L+ AGAD
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475
N QD G P A GH DI + L A
Sbjct: 128 N--AQDKFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
AA G V+ L+ G V +D G+ PLH AA GH +IV+ L+ AGAD N K +D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD- 67
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAEVS 480
G+ PLH AA GH +IV+ L+ AGA+V+
Sbjct: 68 -GYTPLHLAAREGHLEIVEVLLKAGADVN 95
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N K +D G+ PLH AA GH +IV+ L+ AGA+V+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGADVN 62
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 2/97 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+G T LH+AA G+ +V+ LLK G V +D+ GW PLH AA++GH +IV+ L+ GAD
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD 105
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N QD+ G PLH AA+ GH +IV+ L+ GA+V+
Sbjct: 106 VN--AQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V D G PLH AA GH +IV+ L+ GAD N +D+ GW PLH A
Sbjct: 30 VRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN--ARDTDGWTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A++GH +IV+ L+ GA+V+
Sbjct: 88 ADNGHLEIVEVLLKYGADVN 107
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N D G PLH AA GH +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN--AHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL 437
G T LH+AA RG+L +V+ LLK G V QD G + ++G+ D+ + L
Sbjct: 113 GLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 61/100 (61%), Gaps = 14/100 (14%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQ------AL 437
RGET LH+A+ +G++ V+ LL+ G V+D AGW PLHEA NHGH +V+ AL
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 438 VSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
V+ ND PLH+AA +GH DIV+ L+S GA
Sbjct: 69 VNTTGYQNDS--------PLHDAAKNGHVDIVKLLLSYGA 100
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
G T LH+AAA G L +V+ LLK G V DSAG PLH AA GH +IV+ L+ GAD
Sbjct: 38 NGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD 97
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N D AGW PLH AA G +IV+ L+ GA+V+
Sbjct: 98 VN--AYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
AAA G V+ L+ G V D G PLH AA +G +IV+ L+ GAD N DS
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN--ASDS 70
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAEVS 480
AG PLH AA GH +IV+ L+ GA+V+
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLKHGADVN 99
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N D G PLH AA +G +IV+ L+ GA+V+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVN--ATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN 66
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL 437
G T LH+AA G L +V+ LLK G V QD+ G + N G D+ + L
Sbjct: 105 GWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH AA G+ +V+ L+ +G V +DS G PLH AA GH +IV+ L+S GAD
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 96
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N K DS G PLH AA GH +IV+ L+S GA+V+
Sbjct: 97 NAK--DSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
AA GN V+ L++ G V DS G PLH AA GH +IV+ L+S GAD N K DS
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK--DS 68
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAEVS 480
G PLH AA GH +IV+ L+S GA+V+
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVN 97
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH AA G+ +V+ L+ +G V +DS G PLH AA GH +IV+ L+S GAD
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
N DS G PL A HG+ +IV+ L G
Sbjct: 130 N--TSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA +G+ D V+ L+ GAD N DS G PLH AA GH +IV+ L+S GA+V+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVN--ASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Query: 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
E G+T LH+AA +G+L +V+ LLK G V D G PLH AA +GH +IV+ L+
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKN 102
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
GAD N D+ G+ PLH AA+ GH +IV+ L+ GA+V+
Sbjct: 103 GADVN--ATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V +D +G PLH AA GH +IV+ L+ GAD N D G PLH A
Sbjct: 30 VRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN--AADKMGDTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A +GH +IV+ L+ GA+V+
Sbjct: 88 ALYGHLEIVEVLLKNGADVN 107
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N +D +G PLH AA GH +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN--AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL 437
G T LH+AA G+L +V+ LLK G V QD G + ++G+ D+ + L
Sbjct: 113 GFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V +DS G PLH AA GH +IV+ L+ GAD
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N DS G+ PLH AA GH +IV+ L+ GA+V+
Sbjct: 107 N--ASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V +D GW PLH AA+ GH +IV+ L+ GAD N K DS G PLH A
Sbjct: 30 VRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK--DSLGVTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A GH +IV+ L+ GA+V+
Sbjct: 88 ARRGHLEIVEVLLKNGADVN 107
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA RG+L +V+ LLK G V DS G+ PLH AA GH +IV+ L+ GAD
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N QD G + ++G+ D+ + L
Sbjct: 140 N--AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N +D GW PLH AA+ GH +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN--ARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH AA G+ +V+ LL +G +DS G PLH AA +GH +IV+ L+S GADP
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 96
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
N +DS G PLH AA +GH +IV+ L+S GA+
Sbjct: 97 N--AKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
AA GN V+ LL+ G DS G PLH AA +GH +IV+ L+S GADPN +DS
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN--AKDS 68
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAE 478
G PLH AA +GH +IV+ L+S GA+
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGAD 95
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH AA G+ +V+ LL +G +DS G PLH AA +GH +IV+ L+S GADP
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 129
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
N DS G PL A HG+ +IV+ L G
Sbjct: 130 N--TSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
L EAA +G+ D V+ L+ GADPN DS G PLH AA +GH +IV+ L+S GA+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPN--ASDSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH AA G+ +V+ L+ +G V +DS G PLH AA +GH ++V+ L+S GAD
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 96
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N K DS G PLH AA +GH ++V+ L+S GA+V+
Sbjct: 97 NAK--DSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
AA GN V+ L++ G V DS G PLH AA +GH ++V+ L+S GAD N K DS
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK--DS 68
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAEVS 480
G PLH AA +GH ++V+ L+S GA+V+
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVN 97
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH AA G+ +V+ L+ +G V +DS G PLH AA +GH ++V+ L+S GAD
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
N DS G PL A HG+ ++V+ L G
Sbjct: 130 N--TSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 424 EAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
EAA +G+ D V+ L+ GAD N DS G PLH AA +GH ++V+ L+S GA+V+
Sbjct: 10 EAAENGNKDRVKDLIENGADVN--ASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G+T LH+AA G+ +V+ LL QG +DS G PLH AA +GH ++V+ L+S GADP
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 96
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
N K DS G PLH AA +GH ++V+ L+S GA+
Sbjct: 97 NAK--DSDGKTPLHLAAENGHKEVVKLLLSQGAD 128
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
AA GN V+ LL+ G V DS G PLH AA +GH ++V+ L+S GADPN K DS
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK--DS 68
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAE 478
G PLH AA +GH ++V+ L+S GA+
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGAD 95
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G+T LH+AA G+ +V+ LL QG +DS G PLH AA +GH ++V+ L+S GADP
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 129
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
N DS G PL A HG+ ++V+ L G
Sbjct: 130 N--TSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
L EAA +G+ D V+ L+ GAD N DS G PLH AA +GH ++V+ L+S GA+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVN--ASDSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V D+ G PLH AA+ GH +IV+ L+ GAD
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N K D G PLH AAN GH +IV+ L+ GA+V+
Sbjct: 107 NAK--DDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V D GW PLH AA GH +IV+ L+ GAD N D+ G PLH A
Sbjct: 30 VRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN--AYDTLGSTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A+ GH +IV+ L+ GA+V+
Sbjct: 88 AHFGHLEIVEVLLKNGADVN 107
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V +D G PLH AAN GH +IV+ L+ GAD
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV 139
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N QD G + N+G+ D+ + L
Sbjct: 140 N--AQDKFGKTAFDISINNGNEDLAEIL 165
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N D GW PLH AA GH +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGRDDEVRILMANGADVN--AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V DS G PLH AA+ GH ++V+ L+ GAD
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N D G+ PLH AAN GH +IV+ L+ GA+V+
Sbjct: 107 N--ANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V D GW PLH AA GH +IV+ L+ GAD N DS G PLH A
Sbjct: 30 VRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN--ADDSLGVTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A+ GH ++V+ L+ GA+V+
Sbjct: 88 ADRGHLEVVEVLLKNGADVN 107
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA RG+L +V+ LLK G V D G+ PLH AAN GH +IV+ L+ GAD
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADV 139
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N QD G + ++G+ D+ + L
Sbjct: 140 N--AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N D GW PLH AA GH +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN--ASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
E G+T LH+AA G+L +V+ LLK G V D +G PLH AA GH +IV+ L+
Sbjct: 43 EDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
GAD N D+ G PLH AA+ GH +IV+ L+ GA+V+
Sbjct: 103 GADVN--ADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA RG+L +V+ LLK G V D+ G PLH AA+ GH +IV+ L+ GAD
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N QD G + ++G+ D+ + L
Sbjct: 140 N--AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V +D+ G PLH AA GH +IV+ L+ GAD N D +G PLH A
Sbjct: 30 VRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN--ALDFSGSTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A GH +IV+ L+ GA+V+
Sbjct: 88 AKRGHLEIVEVLLKYGADVN 107
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N +D+ G PLH AA GH +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN--AEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V D+ G PLH AA++GH +IV+ L+ GAD
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N K D G+ PLH AA GH +IV+ L+ GA+V+
Sbjct: 107 NAK--DYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V D G PLH AA GH +IV+ L+ GAD N D+ G PLH A
Sbjct: 30 VRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN--AWDNYGATPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A++GH +IV+ L+ GA+V+
Sbjct: 88 ADNGHLEIVEVLLKHGADVN 107
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N D G PLH AA GH +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN--ATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL 437
G T LH+AA G+L +V+ LLK G V QD G + ++G+ D+ + L
Sbjct: 113 GFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+ G+L +++ LLK V D +GW PLH AA GH +IV+ L+ GAD
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N D G+ PLH AA GH +IV+ L+ GA+V+
Sbjct: 107 N--AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V D G PLH N+GH +I++ L+ AD N D +GW PLH A
Sbjct: 30 VRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN--ASDKSGWTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A GH +IV+ L+ GA+V+
Sbjct: 88 AYRGHLEIVEVLLKYGADVN 107
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA RG+L +V+ LLK G V D G+ PLH AA GH +IV+ L+ GAD
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N QD G + ++G+ D+ + L
Sbjct: 140 N--AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N D G PLH N+GH +I++ L+ A+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN--ANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL 437
+G T LH+AA G+L +V+ LLK G V QD G + ++G+ D+ + L
Sbjct: 112 QGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LL+ G V +D G PLH AA +GH ++V+ L+ AGAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N K D G PLH AA +GH ++V+ L+ AGA+V+
Sbjct: 62 NAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 95
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LL+ G V +D G PLH AA +GH ++V+ L+ AGAD
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
N K D G PLH AA +GH ++V+ L+ AGA
Sbjct: 95 NAK--DKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V D G+ PLH AA GH +IV+ L+ GAD
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N D G PLH AA+ GH +IV+ L+ GA+V+
Sbjct: 107 N--AFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V D+ G PLH AA GH +IV+ L+ GAD + D G+ PLH A
Sbjct: 30 VRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD--AADVYGFTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A GH +IV+ L+ GA+V+
Sbjct: 88 AMTGHLEIVEVLLKYGADVN 107
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V D G PLH AA+ GH +IV+ L+ GAD
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQA 471
N QD G + ++G+ D+ ++
Sbjct: 140 N--AQDKFGKTAFDISIDNGNEDLAKS 164
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
L EAA G D V+ L++ GAD N D+ G PLH AA GH +IV+ L+ GA+V
Sbjct: 18 LLEAARAGQDDEVRILIANGADVN--AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA+ G+L +V+ LLK G V D G PLH AA GH +IV+ L+ GAD
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N D+ G PLH AA +GH +IV+ L+ GA+V+
Sbjct: 107 N--AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V D+ G+ PLH AA++GH +IV+ L+ GAD N D G PLH A
Sbjct: 30 VRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN--ASDLTGITPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A GH +IV+ L+ GA+V+
Sbjct: 88 AATGHLEIVEVLLKHGADVN 107
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AAA G+L +V+ LLK G V D+ G PLH AA +GH +IV+ L+ GAD
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N QD G + ++G+ D+ + L
Sbjct: 140 N--AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N D+ G+ PLH AA++GH +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN--ATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AAA G+L +V+ LL+ G V D+ G PLH AA+ GH +IV+ L+ GAD
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV 94
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N K D+ G PL+ AA GH +IV+ L+ GA+V+
Sbjct: 95 NAK--DATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G D G PLH AA GH +IV+ L+ GAD N D+ G PLH A
Sbjct: 18 VRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN--AVDTNGTTPLHLA 75
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A+ GH +IV+ L+ GA+V+
Sbjct: 76 ASLGHLEIVEVLLKYGADVN 95
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N D G PLH AA GH +IV+ L+ GA+V+
Sbjct: 6 LLEAARAGQDDEVRILMANGADAN--AYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL 437
G T L++AA G+L +V+ LLK G V QD G + + G+ D+ + L
Sbjct: 101 GITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V D G+ PLH AA GH +IV+ L+ GAD
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N DS G PLH AA G+ +IV+ L+ GA+V+
Sbjct: 107 N--AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V D+ G PLH AA GH +IV+ L+ GAD + D G+ PLH A
Sbjct: 30 VRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD--ASDVFGYTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A GH +IV+ L+ GA+V+
Sbjct: 88 AYWGHLEIVEVLLKNGADVN 107
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
L EAA G D V+ L++ GAD N D+ G PLH AA GH +IV+ L+ GA+V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN--AADNTGTTPLHLAAYSGHLEIVEVLLKHGADV 73
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL 437
G T LH+AA G L +V+ LLK G V QD G + ++G+ D+ + L
Sbjct: 113 GMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LL+ G V +D G PLH AA +GH ++V+ L+ AGAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
N K D G PLH AA +GH ++V+ L+ AGA
Sbjct: 62 NAK--DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 418 GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
G PLH AA +GH ++V+ L+ AGAD N K D G PLH AA +GH ++V+ L+ AGA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 478 EVS 480
+V+
Sbjct: 60 DVN 62
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
E G T LH+AA G+L +V+ LLK G V D AG PL AA GH +IV+ L+
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
GAD N D G PLH AA GH +IV+ L+ GA+V+
Sbjct: 103 GADVN--ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V +D++GW PLH AA +GH +IV+ L+ GAD N D AG PL A
Sbjct: 30 VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN--AVDHAGMTPLRLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A GH +IV+ L+ GA+V+
Sbjct: 88 ALFGHLEIVEVLLKNGADVN 107
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N +D++GW PLH AA +GH +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGRDDEVRILMANGADVN--AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL 437
G T LH+AA G+L +V+ LLK G V QD G + ++G+ D+ + L
Sbjct: 113 GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V D G PLH AA GH +IV+ L+ GAD
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N D+ G PLH AA GH +IV+ L+ GA+V+
Sbjct: 107 N--AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V D++G PLH AA +GH +IV+ L+ GAD N D G PLH A
Sbjct: 30 VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN--AIDIMGSTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A GH +IV+ L+ GA+V+
Sbjct: 88 ALIGHLEIVEVLLKHGADVN 107
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V D+ G PLH AA GH +IV+ L+ GAD
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N QD G + ++G+ D+ + L
Sbjct: 140 N--AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N D++G PLH AA +GH +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN--ATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V D G PLH AA GH +IV+ L+ GAD
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N D+ G PLH AA GH +IV+ L+ GA+V+
Sbjct: 107 N--AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V D++G PLH AA +GH +IV+ L+ GAD N D G PLH A
Sbjct: 30 VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN--AIDIXGSTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A GH +IV+ L+ GA+V+
Sbjct: 88 ALIGHLEIVEVLLKHGADVN 107
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V D+ G PLH AA GH +IV+ L+ GAD
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N QD G + ++G+ D+ + L
Sbjct: 140 N--AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N D++G PLH AA +GH +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN--ATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
TALH A + G+ +V+ LL+ G PV +D AGW PLH AA+ G +IV+AL+ GA N
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 447 KVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
Q+ G PLH AA+ +I L+ GA
Sbjct: 102 VNQN--GCTPLHYAASKNRHEIAVMLLEGGA 130
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
LH A + GHT+IV+ L+ G NDK D AGW PLH AA+ G +IV+AL+ GA+V+
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDK--DDAGWSPLHIAASAGRDEIVKALLGKGAQVN 100
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 31/126 (24%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G + LH+AA+ G +V++LL +G V + G PLH AA+ +I L+ GA+P
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 445 NDK-------------------------------VQDSAGWLPLHEAANHGHTDIVQALV 473
+ K +QD+ G PLH A + + + LV
Sbjct: 133 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 192
Query: 474 SAGAEV 479
S GA +
Sbjct: 193 SQGASI 198
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
TALH A + G+ +V+ LL+ G PV +D AGW PLH AA+ G +IV+AL+ GA N
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 447 KVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
Q+ G PLH AA+ +I L+ GA
Sbjct: 103 VNQN--GCTPLHYAASKNRHEIAVMLLEGGA 131
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
LH A + GHT+IV+ L+ G NDK D AGW PLH AA+ G +IV+AL+ GA+V+
Sbjct: 45 LHWACSAGHTEIVEFLLQLGVPVNDK--DDAGWSPLHIAASAGRDEIVKALLGKGAQVN 101
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 31/126 (24%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G + LH+AA+ G +V++LL +G V + G PLH AA+ +I L+ GA+P
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
Query: 445 NDK-------------------------------VQDSAGWLPLHEAANHGHTDIVQALV 473
+ K +QD+ G PLH A + + + LV
Sbjct: 134 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 193
Query: 474 SAGAEV 479
S GA +
Sbjct: 194 SQGASI 199
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
TALH A + G+ +V+ LL+ G PV +D AGW PLH AA+ G +IV+AL+ GA N
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 447 KVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
Q+ G PLH AA+ +I L+ GA
Sbjct: 102 VNQN--GCTPLHYAASKNRHEIAVMLLEGGA 130
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
LH A + GHT+IV+ L+ G NDK D AGW PLH AA+ G +IV+AL+ GA V+
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDK--DDAGWSPLHIAASAGRDEIVKALLVKGAHVN 100
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G + LH+AA+ G +V++LL +G V + G PLH AA+ +I L+ GA+P
Sbjct: 73 GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALV 473
+ K D +H AA G+ +V L+
Sbjct: 133 DAK--DHYDATAMHRAAAKGNLKMVHILL 159
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
TA+H AAA+GNL +V LL +QD+ G PLH A + + + LV+ GA
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH AA++ + LL+ G +D +H AA G+ +V L+ A
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N +QD+ G PLH A + + + LV+ GA +
Sbjct: 166 N--IQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
TALH A + G+ +V+ LL+ G PV +D AGW PLH AA+ G +IV+AL+ GA N
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 447 KVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
Q+ G PLH AA+ +I L+ GA
Sbjct: 102 VNQN--GCTPLHYAASKNRHEIAVMLLEGGA 130
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
LH A + GHT+IV+ L+ G NDK D AGW PLH AA+ G +IV+AL+ GA V+
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDK--DDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G + LH+AA+ G +V++LL +G V + G PLH AA+ +I L+ GA+P
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALV 473
+ K D +H AA G+ +V L+
Sbjct: 133 DAK--DHYDATAMHRAAAKGNLKMVHILL 159
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
TA+H AAA+GNL +V LL +QD+ G PLH A + + + LV+ GA
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH AA++ + LL+ G +D +H AA G+ +V L+ A
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N +QD+ G PLH A + + + LV+ GA +
Sbjct: 166 N--IQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
R T LH AA +++V+ LL+ G V +D G +PLH A ++GH ++ + LV GA
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
N V D + PLHEAA G +I + L+ GA+
Sbjct: 101 VN--VADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G LH A + G+ + + L+K G V V D + PLHEAA G +I + L+ GADP
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 134
Query: 445 NDKVQDSAGWLPLHEAANHGHTDI 468
K +D G PL + G TDI
Sbjct: 135 TKKNRD--GNTPL-DLVKDGDTDI 155
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 421 PLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
PLH AA + +V+ L+ GAD + K D G +PLH A ++GH ++ + LV GA V+
Sbjct: 45 PLHFAAGYNRVSVVEYLLQHGADVHAK--DKGGLVPLHNACSYGHYEVAELLVKHGAVVN 102
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
R T LH AA +++V+ LL+ G V +D G +PLH A ++GH ++ + LV GA
Sbjct: 45 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 104
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
N V D + PLHEAA G +I + L+ GA+
Sbjct: 105 VN--VADLWKFTPLHEAAAKGKYEICKLLLQHGAD 137
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G LH A + G+ + + L+K G V V D + PLHEAA G +I + L+ GADP
Sbjct: 79 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 138
Query: 445 NDKVQDSAGWLPLHEAANHGHTDI 468
K +D G PL + G TDI
Sbjct: 139 TKKNRD--GNTPL-DLVKDGDTDI 159
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 421 PLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
PLH AA + +V+ L+ GAD + K D G +PLH A ++GH ++ + LV GA V+
Sbjct: 49 PLHFAAGYNRVSVVEYLLQHGADVHAK--DKGGLVPLHNACSYGHYEVAELLVKHGAVVN 106
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
R T LH AA +++V+ LL+ G V +D G +PLH A ++GH ++ + LV GA
Sbjct: 43 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 102
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
N V D + PLHEAA G +I + L+ GA+
Sbjct: 103 VN--VADLWKFTPLHEAAAKGKYEICKLLLQHGAD 135
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G LH A + G+ + + L+K G V V D + PLHEAA G +I + L+ GADP
Sbjct: 77 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 136
Query: 445 NDKVQDSAGWLPLHEAANHGHTDI 468
K +D G PL + G TDI
Sbjct: 137 TKKNRD--GNTPL-DLVKDGDTDI 157
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 421 PLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
PLH AA + +V+ L+ GAD + K D G +PLH A ++GH ++ + LV GA V+
Sbjct: 47 PLHFAAGYNRVSVVEYLLQHGADVHAK--DKGGLVPLHNACSYGHYEVAELLVKHGAVVN 104
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G+TAL V G+ + LLKQG VQD++G P+H+AA G D ++ LV GAD
Sbjct: 36 GKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
N V D G LP+H A GHT +V L +
Sbjct: 95 N--VPDGTGALPIHLAVQEGHTAVVSFLAA 122
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQG--HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG 441
R L AAARG++ V+ LL + HP + G L + G T I L+ G
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTAL-QVMMFGSTAIALELLKQG 58
Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
A PN VQD++G P+H+AA G D ++ LV GA+V+
Sbjct: 59 ASPN--VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 95
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V D AG PLH AA GH +IV+ L+ GAD N DS G PLH A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ASDSWGRTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A GH +IV+ L+ GA+V+
Sbjct: 88 ATVGHLEIVEVLLEYGADVN 107
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA RG+L +V+ LLK G V DS G PLH AA GH +IV+ L+ GAD
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N QD G + ++G+ D+ + L
Sbjct: 107 N--AQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G+TAL V G+ + LLKQG VQD++G P+H+AA G D ++ LV GAD
Sbjct: 42 GKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 100
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
N V D G LP+H A GHT +V L +
Sbjct: 101 N--VPDGTGALPIHLAVQEGHTAVVSFLAA 128
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 379 LLEKPRGETALHVAAARGNLTLVQSLLKQ--GHPVKVQDSAGWLPLHEAANHGHTDIVQA 436
LLE+ R L AAARG++ V+ LL + HP + G L + G T I
Sbjct: 2 LLEEVRAGDRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTAL-QVMMFGSTAIALE 59
Query: 437 LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L+ GA PN VQD++G P+H+AA G D ++ LV GA+V+
Sbjct: 60 LLKQGASPN--VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 101
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+ A G++ + L+K G V G+ PLH A+++G+ +V+ L+ AD
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
N K + G+ PLH+AA GHTDIV L+ GA
Sbjct: 338 NAKTK--LGYSPLHQAAQQGHTDIVTLLLKNGA 368
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LHVA+ GN+ LV+ LL+ V + G+ PLH+AA GHTDIV L+ GA P
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N+ D G PL A G+ + L
Sbjct: 371 NEVSSD--GTTPLAIAKRLGYISVTDVL 396
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA + + + +SLL+ G + G PLH AA GH ++V L+S A
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA-- 269
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N + + +G PLH A GH + L+ G V
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
T LHVA+ G+L +V++LL++G V + PLH AA GHT++ + L+ A N
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 447 KVQDSAGWLPLHEAANHGHTDIVQALV 473
K +D PLH AA GHT++V+ L+
Sbjct: 76 KAKDD--QTPLHCAARIGHTNMVKLLL 100
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN 445
ET LH+AA G+ + + LL+ V + PLH AA GHT++V+ L+ A+PN
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALV 473
+ +AG PLH AA GH + V AL+
Sbjct: 108 --LATTAGHTPLHIAAREGHVETVLALL 133
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQ-GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
+G T LHVAA G + + + LL++ HP G PLH A +H + DIV+ L+ G
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203
Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
P+ + G+ PLH AA ++ ++L+ G
Sbjct: 204 SPHSPAWN--GYTPLHIAAKQNQVEVARSLLQYGG 236
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G++ V +LL++ G+ PLH AA +G + + L+ A P
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
N ++ G PLH A +H + DIV+ L+ G
Sbjct: 173 NAAGKN--GLTPLHVAVHHNNLDIVKLLLPRGG 203
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 421 PLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
PLH A+ GH IV+ L+ GA PN V + PLH AA GHT++ + L+ A+V+
Sbjct: 17 PLHVASFMGHLPIVKNLLQRGASPN--VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
R T LH+AA + +VQ LL+ G V +D G +PLH A ++GH ++ + L+ GA
Sbjct: 57 RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
N D + PLHEAA+ ++ L+S GA+
Sbjct: 117 VN--AMDLWQFTPLHEAASKNRVEVCSLLLSHGAD 149
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 421 PLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
PLH AA + IVQ L+ GAD + K D G +PLH A ++GH ++ + L+ GA V+
Sbjct: 61 PLHLAAGYNRVRIVQLLLQHGADVHAK--DKGGLVPLHNACSYGHYEVTELLLKHGACVN 118
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 386 ETALHVAAARGNL---TLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
ETALH A A + + + LL++G V ++ PLH AA H D+++ L GA
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N DS G LH AA GH + L+S G++ S
Sbjct: 272 KMN--ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G LH A + G+ + + LLK G V D + PLHEAA+ ++ L+S GADP
Sbjct: 91 GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V D AG PLH AA GH +IV+ L+ GAD N +D G PLH A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ARDIWGRTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A GH +IV+ L+ GA+V+
Sbjct: 88 ATVGHLEIVEVLLEYGADVN 107
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA RG+L +V+ LLK G V +D G PLH AA GH +IV+ L+ GAD
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N QD G + ++G+ D+ + L
Sbjct: 107 N--AQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V D AG PLH AA GH +IV+ L+ GAD N D G PLH A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ASDIWGRTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A GH +IV+ L+ GA+V+
Sbjct: 88 ATVGHLEIVEVLLEYGADVN 107
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA RG+L +V+ LLK G V D G PLH AA GH +IV+ L+ GAD
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N QD G + ++G+ D+ + L
Sbjct: 107 N--AQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V D G PLH AA GH +IV+ L+ GAD N +D+ G PLH A
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN--AEDNFGITPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A GH +IV+ L+ GA+V+
Sbjct: 88 AIRGHLEIVEVLLKHGADVN 107
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V +D+ G PLH AA GH +IV+ L+ GAD
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N QD G + ++G+ D+ + L
Sbjct: 107 N--AQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N D G PLH AA GH +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN--ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V +D G PL+ A HGH +IV+ L+ GAD N D+ G+ PLH A
Sbjct: 30 VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN--AVDAIGFTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A GH +I + L+ GA+V+
Sbjct: 88 AFIGHLEIAEVLLKHGADVN 107
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T L++A A G+L +V+ LLK G V D+ G+ PLH AA GH +I + L+ GAD
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N QD G + +G+ D+ + L
Sbjct: 107 N--AQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N K D G PL+ A HGH +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAK--DEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G+TAL V G+ + LLKQG VQD++G P+H+AA G D ++ LV GAD
Sbjct: 42 GKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV 100
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N DS G LP+H A GH+ +V L
Sbjct: 101 N--ALDSTGSLPIHLAIREGHSSVVSFL 126
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 392 AAARGNLTLVQSLLKQ--GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQ 449
AAARG++ V+ LL + HP + G L + G + L+ GA PN VQ
Sbjct: 15 AAARGDVQEVRRLLHRELVHP-DALNRFGKTAL-QVMMFGSPAVALELLKQGASPN--VQ 70
Query: 450 DSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
D++G P+H+AA G D ++ LV GA+V
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADV 100
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH AA G+ V+ LL +G V + G PLH AA +GH +IV+ L++ GAD
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N + +D G P H A +GH +IV+ L + GA+V+
Sbjct: 69 NARSKD--GNTPEHLAKKNGHHEIVKLLDAKGADVN 102
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G + LHVAA G L+ LLK G +++ +PLH A GH +V+ L+ + A P
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N K D +G PL A + GH ++V L+ GA ++
Sbjct: 146 NKK--DLSGNTPLIYACSGGHHELVALLLQHGASIN 179
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 408 GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
G V V G PLH AA HG D++ L+ GA+ + D A +PLH A GH
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQA--VPLHLACQQGHFQ 133
Query: 468 IVQALVSAGAE 478
+V+ L+ + A+
Sbjct: 134 VVKCLLDSNAK 144
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
G T L A + G+ LV LL+ G + ++ G LHEA H +V+ L+ GA
Sbjct: 152 GNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA 209
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G+TAL V G+ + LLKQG VQD++G P+H+AA G D ++ LV GAD
Sbjct: 44 GKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV 102
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N DS G LP+H A GH+ +V L
Sbjct: 103 N--ALDSTGSLPIHLAIREGHSSVVSFL 128
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 392 AAARGNLTLVQSLLKQ--GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQ 449
AAARG++ V+ LL + HP + G L + G + L+ GA PN VQ
Sbjct: 17 AAARGDVQEVRRLLHRELVHP-DALNRFGKTAL-QVMMFGSPAVALELLKQGASPN--VQ 72
Query: 450 DSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
D++G P+H+AA G D ++ LV GA+V
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADV 102
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V +D G PLH AA + H +IV+ L+ GAD N D+ G PLH
Sbjct: 30 VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN--AIDAIGETPLHLV 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A +GH +IV+ L+ GA+V+
Sbjct: 88 AMYGHLEIVEVLLKHGADVN 107
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
E G T LH+AA +L +V+ LLK G V D+ G PLH A +GH +IV+ L+
Sbjct: 43 EDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKH 102
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQAL 472
GAD N QD G + ++G+ D+ + L
Sbjct: 103 GADVN--AQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N +D G PLH AA + H +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN--AEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G + LH A G +V+ L+ +G + V + PLH AA+HGH DIVQ L+ AD
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N + G +PLH A G + + LV+ GA VS
Sbjct: 99 N--AVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G + LH A G +V+ L+ +G + V + PLH AA+HGH DIVQ L+ AD
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 93
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N + G +PLH A G + + LV+ GA VS
Sbjct: 94 N--AVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 127
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G + LH+AA G+ + + LL+ G + PLH AA+ GH +IV+ L+ GAD
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N K D LH A H H ++V+ L+ GA+V
Sbjct: 94 NAK--DMLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA--DPNDKVQDSAGWLPLH 458
V+ L+ G P D G PLH AA +GH + L+ AG D KV + PLH
Sbjct: 18 VRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRT----PLH 72
Query: 459 EAANHGHTDIVQALVSAGAEVS 480
AA+ GH +IV+ L+ GA+V+
Sbjct: 73 MAASEGHANIVEVLLKHGADVN 94
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
AA G V+ L+ G V D G PLH AA++ H +IV+ L+ GAD N D+
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN--AHDN 78
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAEVS 480
G PLH AA GH +IV+ L+ GA+V+
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGADVN 107
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+G T LH+AA +L +V+ LLK G V D+ G PLH AA GH +IV+ L+ GAD
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD 105
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N QD G + ++G+ D+ + L
Sbjct: 106 VN--AQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N D G PLH AA++ H +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN--ANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG-ADPN 445
T L AA +L V+ L+K G V +D+ G LH AA GH ++VQ L+S G D N
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
QD GW P+ A + H D+V+ L+S G++++
Sbjct: 106 --CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN 138
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS 439
+E + LH AA G++ + L++ G + PL EAA + H + V+ L+
Sbjct: 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 440 AGA--DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG 476
AGA DP +D+ G LH AA GH ++VQ L+S G
Sbjct: 66 AGALVDP----KDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 456 PLHEAANHGHTDIVQALVSAGAEV 479
PLH AA GH DI LV AGA +
Sbjct: 14 PLHAAAEAGHVDICHMLVQAGANI 37
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
A + G+ V LL++G + + G LH+A + D+V+ LV GA+ N D+
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP--DN 104
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAEVS 480
GW+PLH AA+ G+ DI + L+S GA V
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVG 133
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
G TALH A N+ +V+ L++ G + D+ GW+PLH AA+ G+ DI + L+S GA
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA 130
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV 438
G TALHVAAA+G +++ L++ + V ++D GW PLH AA+ G + + LV
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 402 QSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
+ L GH V+ + +G LH AA G+T++++ L+ A D N ++D GW PLH A
Sbjct: 182 RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN--IKDYDGWTPLHAA 239
Query: 461 ANHGHTDIVQALV 473
A+ G + + LV
Sbjct: 240 AHWGKEEACRILV 252
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+G T LH+A + + Q L++ G V+++D +PLH AA+ G +++ L G
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSA-GAE 478
+ QD GW PL A GH D LV GAE
Sbjct: 166 AVN-WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 372 LETPTTSLLEKPR-GETALHVAAARGNLTLVQSLLKQGHPVKV---QDSAGWLPLHEAAN 427
L + + LL+K + G LH + + + LL + V + D +GW P H A +
Sbjct: 22 LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81
Query: 428 HGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
G+ ++V++L P+ + G LH A ++ Q L+ GA V
Sbjct: 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+G T LH+A + + Q L++ G V+++D +PLH AA+ G +++ L G
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSA-GAE 478
+ QD GW PL A GH D LV GAE
Sbjct: 166 AVN-WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 372 LETPTTSLLEKPR-GETALHVAAARGNLTLVQSLLKQGHPVKV---QDSAGWLPLHEAAN 427
L + + LL+K + G LH + + + LL + V + D +GW P H A +
Sbjct: 22 LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81
Query: 428 HGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
G+ ++V++L P+ + G LH A ++ Q L+ GA V
Sbjct: 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+G T LH+A + + Q L++ G V+++D +PLH AA+ G +++ L G
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSA-GAE 478
+ QD GW PL A GH D LV GAE
Sbjct: 166 AVNW-QDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 372 LETPTTSLLEKPR-GETALHVAAARGNLTLVQSLLKQGHPVKV---QDSAGWLPLHEAAN 427
L + + LL+K + G LH + + + LL + V + D +GW P H A +
Sbjct: 22 LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81
Query: 428 HGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
G+ ++V++L P+ + G LH A ++ Q L+ GA V
Sbjct: 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKV 448
LH AA RGNL+ ++ L V D AG L+ A + GH DIV+ L + PN ++
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFT---QPNIEL 133
Query: 449 --QDSAGWLPLHEAANHGHTDIVQALVSAGA 477
Q+ G LH AA G+ DIVQ L++ GA
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 385 GETALHVAAARGNLTLVQSLLKQG 408
G+TALH AA +G +VQ LL +G
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKG 163
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G TAL A L + + LL +G V +D +G PL + G++++ L+ GA+
Sbjct: 68 GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
ND+ + G PL A+ +G ++IV+ L+ GA++S
Sbjct: 128 NDR--NLEGETPLIVASKYGRSEIVKKLLELGADIS 161
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 396 GNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWL 455
G LVQ ++ + + + G LH A GHT+IV+ LV G + N DS GW
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN--AADSDGWT 105
Query: 456 PLHEAANHGHTDIVQALVSAGAEV 479
PLH AA+ + + + LV +GA V
Sbjct: 106 PLHCAASCNNVQVCKFLVESGAAV 129
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
G TALH A G+ +V+ L++ G V DS GW PLH AA+ + + + LV +GA
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 429 GHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
G D+VQ ++ DP+ + + G LH A GHT+IV+ LV G V+
Sbjct: 48 GEFDLVQRIIYEVDDPS--LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 97
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 396 GNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWL 455
G LVQ ++ + + + G LH A GHT+IV+ LV G + N DS GW
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN--AADSDGWT 105
Query: 456 PLHEAANHGHTDIVQALVSAGAEV 479
PLH AA+ + + + LV +GA V
Sbjct: 106 PLHCAASCNNVQVCKFLVESGAAV 129
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
G TALH A G+ +V+ L++ G V DS GW PLH AA+ + + + LV +GA
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 429 GHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
G D+VQ ++ DP+ + + G LH A GHT+IV+ LV G V+
Sbjct: 48 GEFDLVQRIIYEVDDPS--LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 97
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 400 LVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLH 458
LVQ LL+ G V Q+ GW PLH A DIV+ L+ GADP ++ G P
Sbjct: 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP--VLRKKNGATPFL 77
Query: 459 EAANHGHTDIVQALVSAGAEVS 480
AA G +++ +S GA+V+
Sbjct: 78 LAAIAGSVKLLKLFLSKGADVN 99
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 379 LLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV 438
+L K G T +AA G++ L++ L +G V D G+ EAA +G ++ L
Sbjct: 66 VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125
Query: 439 SAGADPNDKVQD--------SAGWLPLHEAANHGHTDIVQALV-SAGAEVS 480
GA+ N + + G L +AA GH ++++ L+ GA+V+
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V + G PLH AA H +IV+ L+ GAD
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N QD G + ++G+ D+ + L
Sbjct: 107 N--AQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L G V D G PLH AA GH +IV+ L+ GAD N + G PLH A
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN--ATGNTGRTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
A H +IV+ L+ GA+V+
Sbjct: 88 AWADHLEIVEVLLKHGADVN 107
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L + GAD N D G PLH AA GH +IV+ L+ GA+V+
Sbjct: 18 LLEAARAGQDDEVRILTANGADVN--ANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD N K +D G+ PLH AA GH +IV+ L+ AGA+V+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGADVN 62
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
AA G V+ L+ G V +D G+ PLH AA GH +IV+ L+ AGAD N QD
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN--AQDK 66
Query: 452 AGWLPLHEAANHGHTDIVQALVSA 475
G + ++G+ D+ + L A
Sbjct: 67 FGKTAFDISIDNGNEDLAEILQKA 90
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
G T LH+AA G+L +V+ LLK G V QD G + ++G+ D+ + L A
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQKA 90
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 388 ALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN-- 445
++H AA+G + + + ++Q + + D G+ PL AA HG +V+ L+ GADP
Sbjct: 22 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 81
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
K ++SA L A + G+TDIV+ L+ G +V+
Sbjct: 82 GKGRESA----LSLACSKGYTDIVKMLLDCGVDVN 112
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T L AAA G + +V+ LL+ G ++ L A + G+TDIV+ L+ G D
Sbjct: 52 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 111
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
N+ D G PL A + H V+ L+ +GA+
Sbjct: 112 NEY--DWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 379 LLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV 438
LL K R E+AL +A ++G +V+ LL G V D G PL A + H V+ L+
Sbjct: 80 LLGKGR-ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 138
Query: 439 SAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
+GADP ++ +G+ + A G+ + Q + S
Sbjct: 139 ESGADPT--IETDSGYNSMDLAVALGYRSVQQVIES 172
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 397 NLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWL 455
++ LVQ LL+ G V Q+ GW PLH A DIV+ L+ GADP ++ G
Sbjct: 37 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP--VLRKKNGAT 94
Query: 456 PLHEAANHGHTDIVQALVSAGAEVS 480
P AA G +++ +S GA+V+
Sbjct: 95 PFILAAIAGSVKLLKLFLSKGADVN 119
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 379 LLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV 438
+L K G T +AA G++ L++ L +G V D G+ EAA +G ++ L
Sbjct: 86 VLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 145
Query: 439 SAGADPNDKVQD--------SAGWLPLHEAANHGHTDIVQALV-SAGAEVS 480
GA+ N + + G L +AA GH ++++ L+ GA+V+
Sbjct: 146 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 196
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 388 ALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN-- 445
++H AA+G + + + ++Q + + D G+ PL AA HG +V+ L+ GADP
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
K ++SA L A + G+TDIV+ L+ G +V+
Sbjct: 66 GKGRESA----LSLACSKGYTDIVKMLLDCGVDVN 96
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T L AAA G + +V+ LL+ G ++ L A + G+TDIV+ L+ G D
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 95
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
N+ D G PL A + H V+ L+ +GA+
Sbjct: 96 NEY--DWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 379 LLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV 438
LL K R E+AL +A ++G +V+ LL G V D G PL A + H V+ L+
Sbjct: 64 LLGKGR-ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122
Query: 439 SAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
+GADP ++ +G+ + A G+ + Q + S
Sbjct: 123 ESGADPT--IETDSGYNSMDLAVALGYRSVQQVIES 156
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 388 ALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN-- 445
++H AA+G + + + ++Q + + D G+ PL AA HG +V+ L+ GADP
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
K ++SA L A + G+TDIV+ L+ G +V+
Sbjct: 64 GKGRESA----LSLACSKGYTDIVKMLLDCGVDVN 94
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T L AAA G + +V+ LL+ G ++ L A + G+TDIV+ L+ G D
Sbjct: 34 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 93
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
N+ D G PL A + H V+ L+ +GA+
Sbjct: 94 NEY--DWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 379 LLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV 438
LL K R E+AL +A ++G +V+ LL G V D G PL A + H V+ L+
Sbjct: 62 LLGKGR-ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 120
Query: 439 SAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
+GADP ++ +G+ + A G+ + Q + S
Sbjct: 121 ESGADPT--IETDSGYNSMDLAVALGYRSVQQVIES 154
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
AA G L +VQ +K+ + + G LH A + IV L++AGA+ N DS
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP--DS 85
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAEV 479
GW PLH AA+ T I ALV GA +
Sbjct: 86 HGWTPLHCAASCNDTVICMALVQHGAAI 113
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 31/58 (53%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
G TALH A N ++V L+ G V DS GW PLH AA+ T I ALV GA
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQG-----HPV-KVQDSAGWLPLHEAANHGHTDIVQAL 437
RG T LH+A +G L V L + H + K + G LH A+ HG+ IV+ L
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 136
Query: 438 VSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
VS GAD N + + G LH A + + D+V L+ GA+V+
Sbjct: 137 VSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN 445
+T LH+A + ++LL G +++D G PLH A G V L + P+
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 446 ----DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
K + G LH A+ HG+ IV+ LVS GA+V+
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHP----VKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
G++ LH+A L +++Q + Q++ PLH A +I +AL+ A
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67
Query: 441 GADPNDKVQDSAGWLPLHEAANHG 464
G DP +++D G PLH A G
Sbjct: 68 GCDP--ELRDFRGNTPLHLACEQG 89
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
T LH A +G+L++V L+K G + D G +H AA GHT IV L++ G D +
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD- 136
Query: 447 KVQDSAGWLPLHEAANHGHT 466
+ D G PL AA H+
Sbjct: 137 -MMDQNGMTPLMWAAYRTHS 155
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 404 LLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANH 463
L++ G+ V+ D LH AA + D+V+ +S GA D++ PLH A
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV-DQLGGDLNSTPLHWATRQ 86
Query: 464 GHTDIVQALVSAGAEVS 480
GH +V L+ GA+ S
Sbjct: 87 GHLSMVVQLMKYGADPS 103
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 376 TTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAG 418
+ +L +K TALH A GN T++ LL+ G V Q+ G
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKG 210
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQG-----HPV-KVQDSAGWLPLHEAANHGHTDIVQAL 437
RG T LH+A +G L V L + H + K + G LH A+ HG+ IV+ L
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 133
Query: 438 VSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
VS GAD N + + G LH A + + D+V L+ GA+V+
Sbjct: 134 VSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 175
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN 445
+T LH+A + ++LL G +++D G PLH A G V L + P+
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 446 ----DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
K + G LH A+ HG+ IV+ LVS GA+V+
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 141
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHP----VKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
G++ LH+A L +++Q + Q++ PLH A +I +AL+ A
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 64
Query: 441 GADPNDKVQDSAGWLPLHEAANHG 464
G DP +++D G PLH A G
Sbjct: 65 GCDP--ELRDFRGNTPLHLACEQG 86
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 419 WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
W P+HEAA HGH ++ L+S G N D PLHEA GH V+ L+ GA+
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS--PLHEACLGGHLSCVKILLKHGAQ 61
Query: 479 VS 480
V+
Sbjct: 62 VN 63
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 30/123 (24%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
+ +H AA G+ +++L+ QG V + + PLHEA GH V+ L+ GA N
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 447 KVQD----------SAGW--------------------LPLHEAANHGHTDIVQALVSAG 476
D S W P+HEAA GH + V +L++ G
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG 124
Query: 477 AEV 479
+
Sbjct: 125 GNI 127
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQ-DSAGWLPLHEAANHGHTDIVQALVSAGADPN 445
T L A G+ V LL+ G V+ + D A P+HEAA GH + V +L++ G + +
Sbjct: 71 TPLFNACVSGSWDCVNLLLQHGASVQPESDLAS--PIHEAARRGHVECVNSLIAYGGNID 128
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
K+ PL+ A + V+ L+ +GA+V+
Sbjct: 129 HKISHLG--TPLYLACENQQRACVKKLLESGADVN 161
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN- 445
+ +H AA RG++ V SL+ G + + S PL+ A + V+ L+ +GAD N
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 162
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
K QDS PLH A ++ L+ GA+
Sbjct: 163 GKGQDS----PLHAVARTASEELACLLMDFGAD 191
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 51/129 (39%), Gaps = 41/129 (31%)
Query: 385 GETALHVAAARGNLTLVQSLLKQG------------HPV--------KVQD--------- 415
G TALH + + N +VQ LL G P+ K QD
Sbjct: 111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLF 170
Query: 416 ----------SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGH 465
AG L A +HG D+V+AL++ AD N VQD G L A HGH
Sbjct: 171 RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN--VQDDDGSTALMCACEHGH 228
Query: 466 TDIVQALVS 474
+I L++
Sbjct: 229 KEIAGLLLA 237
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G+TAL +A + G + +V++LL V VQD G L A HGH +I L+ A
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIA-GLLLAVPSC 241
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
+ + D G L A + G ++I L S
Sbjct: 242 DISLTDRDGSTALMVALDAGQSEIASMLYS 271
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 409 HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPL 457
+ V + DS G LH + +H + +VQ L+ +G DK Q+ AG+ P+
Sbjct: 102 YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDK-QNRAGYSPI 149
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V +D G PLH AA +GH ++V+ L+ AGAD N QD G +
Sbjct: 22 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN--AQDKFGKTAFDIS 79
Query: 461 ANHGHTDIVQAL 472
++G+ D+ + L
Sbjct: 80 IDNGNEDLAEIL 91
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L EAA G D V+ L++ GAD +D G PLH AA +GH ++V+ L+ AGA+V+
Sbjct: 10 LLEAARAGQDDEVRILMANGADV--AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL 437
G T LH+AA G+L +V+ LL+ G V QD G + ++G+ D+ + L
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 419 WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
W P+HEAA HGH ++ L+S G N D PLHEA GH V+ L+ GA+
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS--PLHEACLGGHLSCVKILLKHGAQ 117
Query: 479 V 479
V
Sbjct: 118 V 118
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 30/123 (24%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
+ +H AA G+ +++L+ QG V + + PLHEA GH V+ L+ GA N
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 447 KVQD----------SAGW--------------------LPLHEAANHGHTDIVQALVSAG 476
D S W P+HEAA GH + V +L++ G
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG 180
Query: 477 AEV 479
+
Sbjct: 181 GNI 183
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
T L A G+ V LL+ G V+ + P+HEAA GH + V +L++ G + +
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDH 185
Query: 447 KVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
K+ PL+ A + V+ L+ +GA+V
Sbjct: 186 KISHLG--TPLYLACENQQRACVKKLLESGADV 216
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN- 445
+ +H AA RG++ V SL+ G + + S PL+ A + V+ L+ +GAD N
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 218
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
K QDS PLH ++ L+ GA+
Sbjct: 219 GKGQDS----PLHAVVRTASEELACLLMDFGAD 247
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 35/126 (27%)
Query: 380 LEKPRGETALHVAAARGNLTLVQSLL--------------------KQGHP--------- 410
+ +P G L AAARG+L + SLL K G+P
Sbjct: 1 MAEPWGNE-LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59
Query: 411 ---VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
++D G+ +H+AA G D +Q L+ AD N ++D+ G LPLH AA GH
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN--IEDNEGNLPLHLAAKEGHLR 117
Query: 468 IVQALV 473
+V+ LV
Sbjct: 118 VVEFLV 123
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 35/126 (27%)
Query: 380 LEKPRGETALHVAAARGNLTLVQSLL--------------------KQGHP--------- 410
+ +P G L AAARG+L + SLL K G+P
Sbjct: 1 MAEPWGNE-LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59
Query: 411 ---VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
++D G+ +H+AA G D +Q L+ AD N ++D+ G LPLH AA GH
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN--IEDNEGNLPLHLAAKEGHLR 117
Query: 468 IVQALV 473
+V+ LV
Sbjct: 118 VVEFLV 123
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 35/126 (27%)
Query: 380 LEKPRGETALHVAAARGNLTLVQSLL--------------------KQGHP--------- 410
+ +P G L AAARG+L + SLL K G+P
Sbjct: 1 MAEPWGNE-LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59
Query: 411 ---VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
++D G+ +H+AA G D +Q L+ AD N ++D+ G LPLH AA GH
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN--IEDNEGNLPLHLAAKEGHLR 117
Query: 468 IVQALV 473
+V+ LV
Sbjct: 118 VVEFLV 123
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 35/126 (27%)
Query: 380 LEKPRGETALHVAAARGNLTLVQSLL--------------------KQGHP--------- 410
+ +P G L AAARG+L + SLL K G+P
Sbjct: 1 MAEPWGNE-LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59
Query: 411 ---VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
++D G+ +H+AA G D +Q L+ AD N ++D+ G LPLH AA GH
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVN--IEDNEGNLPLHLAAKEGHLR 117
Query: 468 IVQALV 473
+V+ LV
Sbjct: 118 VVEFLV 123
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
L EAA G D V+ L++ GAD K D G PLH AA +GH ++V+ L+ AGA+V
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAK--DKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V+ L+ G V +D G PLH AA +GH ++V+ L+ AGAD QD G +
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV--XAQDKFGKTAFDIS 97
Query: 461 ANHGHTDIVQAL 472
++G+ D+ + L
Sbjct: 98 IDNGNEDLAEIL 109
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL 437
G T LH+AA G+L +V+ LL+ G V QD G + ++G+ D+ + L
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 375 PTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSA-------------GWLP 421
P TS E G+TALH+A N+ LV++LL +G V + + G P
Sbjct: 67 PMTS--ELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLH 458
L AA G +IV+ L+ GAD + QDS G LH
Sbjct: 125 LSFAACVGSEEIVRLLIEHGAD--IRAQDSLGNTVLH 159
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 16/111 (14%)
Query: 385 GETALHVAAARGNLTLVQSLLKQG-----HPVKVQDSAGWLPLHEAANHGHTDIVQALVS 439
GETALH+AA NL L++ P+ + G LH A + + ++V+AL++
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 440 AGADPNDKVQDSA-----------GWLPLHEAANHGHTDIVQALVSAGAEV 479
GA + + S G PL AA G +IV+ L+ GA++
Sbjct: 97 RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI 147
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
A G+L V+ + +G V G PLH AA+ G +I++ L+ GAD N D
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN--APDK 66
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAE 478
PL A GH V+ L+S GA+
Sbjct: 67 HHITPLLSAVYEGHVSCVKLLLSKGAD 93
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G LH AA G L +++ LL +G + D PL A GH V+ L+S GAD
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 445 NDKVQDS 451
K D
Sbjct: 95 TVKGPDG 101
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 425 AANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
A +G D V+ V+ G D N ++ G PLH AA+ G +I++ L+ GA+++
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLE--GGRKPLHYAADCGQLEILEFLLLKGADIN 62
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 35/126 (27%)
Query: 380 LEKPRGETALHVAAARGNLTLVQSLL--------------------KQGHP--------- 410
+ +P G L AAARG+L + SLL K G+P
Sbjct: 1 MAEPWGNE-LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59
Query: 411 ---VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
++D G +H+AA G D +Q L+ AD N ++D+ G LPLH AA GH
Sbjct: 60 GANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVN--IEDNEGNLPLHLAAKEGHLR 117
Query: 468 IVQALV 473
+V+ LV
Sbjct: 118 VVEFLV 123
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKV 448
L AAARG + V++LL+ G +S G P+ + G + + L+ GA+PN
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPN--C 72
Query: 449 QDSAGWL-PLHEAANHGHTDIVQALVSAGAEV 479
D A P+H+AA G D + L AGA +
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104
Score = 35.8 bits (81), Expect = 0.055, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 396 GNLTLVQSLLKQGHPVKVQDSAGWL-PLHEAANHGHTDIVQALVSAGADPNDKVQDSAGW 454
G+ + + LL G D A P+H+AA G D + L AGA + V+D+ G
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--VRDAWGR 112
Query: 455 LPLHEAANHGHTDIVQALVSAGA 477
LP+ A GH D+ + L +A
Sbjct: 113 LPVDLAEELGHRDVARYLRAAAG 135
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 413 VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQAL 472
++ SA WL AA G + V+AL+ AGA+PN +S G P+ + G + + L
Sbjct: 9 MEPSADWLA--TAAARGRVEEVRALLEAGANPN--APNSYGRRPI-QVMMMGSARVAELL 63
Query: 473 VSAGAE 478
+ GAE
Sbjct: 64 LLHGAE 69
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
+H AA G L + L + G + V+D+ G LP+ A GH D+ + L +A
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG 135
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
A G+L V+ + +G V G PLH AA+ G +I++ L+ GAD N D
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN--APDK 71
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAE 478
PL A GH V+ L+S GA+
Sbjct: 72 HHITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G LH AA G L +++ LL +G + D PL A GH V+ L+S GAD
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 445 NDKVQDS 451
K D
Sbjct: 100 TVKGPDG 106
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 425 AANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
A +G D V+ V+ G D N ++ G PLH AA+ G +I++ L+ GA+++
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLE--GGRKPLHYAADCGQLEILEFLLLKGADIN 67
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN 445
+ L AAARG + V+ LL+ G + G P+ + G + + L+ GA+PN
Sbjct: 13 DAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPN 71
Query: 446 DKVQDSAGWL-PLHEAANHGHTDIVQALVSAGAEV 479
D A P+H+AA G D + L AGA +
Sbjct: 72 --CADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104
Score = 36.2 bits (82), Expect = 0.036, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 396 GNLTLVQSLLKQGHPVKVQDSAGWL-PLHEAANHGHTDIVQALVSAGADPNDKVQDSAGW 454
G+ + + LL G D A P+H+AA G D + L AGA + V D+ G
Sbjct: 55 GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--VCDAWGR 112
Query: 455 LPLHEAANHGHTDIVQALVSAGAE 478
LP+ A GH DI + L +A +
Sbjct: 113 LPVDLAEEQGHRDIARYLHAATGD 136
Score = 32.3 bits (72), Expect = 0.60, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+H AA G L + L + G + V D+ G LP+ A GH DI + L +A D
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQD-SAGWLPLHEAANHGHTDIVQALVSAGAD 443
G TALHVA VQ LL++G + D +G PL A + +VQ L+ GA+
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N Q +G LH A+ G +V+ LV +GA+ S
Sbjct: 176 VN--AQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 210
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 385 GETALHVAAARGNLTLVQSLL----KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
G+T LH+A +GNL V L+ + G + + ++ PLH A +V+ LV+A
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
GA P D G H A H ++AL+ + A
Sbjct: 69 GASP--MALDRHGQTAAHLACEHRSPTCLRALLDSAA 103
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHP----VKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
G+TA H+A + T +++LL P ++ ++ G LH A N + VQ L+
Sbjct: 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER 138
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
GAD D V +G PL A + +VQ L+ GA V
Sbjct: 139 GAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKV 448
L AAARG + V++LL+ G +S G P+ + G + + L+ GA+PN
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPN--C 72
Query: 449 QDSAGWL-PLHEAANHGHTDIVQALVSAGAEV 479
D A P+H+AA G D + L AGA +
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 396 GNLTLVQSLLKQGHPVKVQDSAGWL-PLHEAANHGHTDIVQALVSAGADPNDKVQDSAGW 454
G+ + + LL G D A P+H+AA G D + L AGA + V+D+ G
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--VRDAWGR 112
Query: 455 LPLHEAANHGHTDIVQALVSAGA 477
LP+ A GH D+ + L +A
Sbjct: 113 LPVDLAEELGHRDVARYLRAAAG 135
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
+H AA G L + L + G + V+D+ G LP+ A GH D+ + L +A
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG 135
Score = 28.9 bits (63), Expect = 6.5, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 413 VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQAL 472
++ SA WL AA G + V+AL+ AGA PN +S G P+ + G + + L
Sbjct: 9 MEPSADWLA--TAAARGRVEEVRALLEAGALPN--APNSYGRRPI-QVMMMGSARVAELL 63
Query: 473 VSAGAE 478
+ GAE
Sbjct: 64 LLHGAE 69
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G +A + A A N+ LV +LL G + ++ PLH+AA T IV+ L+ +G D
Sbjct: 31 GHSASYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQAATLEDTKIVKILLFSGLD- 87
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALV 473
D D G L+ A + G+ V+ V
Sbjct: 88 -DSQFDDKGNTALYYAVDSGNXQTVKLFV 115
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 381 EKPRGETALHVAAARGNLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS 439
EK +G TALH AA N +V+ L+ ++G QD G P+ AA G ++V L+
Sbjct: 275 EKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ 334
Query: 440 AGA 442
GA
Sbjct: 335 QGA 337
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
T L A A +L + LL+ G V DSAG PLH A GHT + + GAD
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG- 295
Query: 447 KVQDSAGWLPLHEAANHGHTDIVQAL 472
+DS G PL A + DIV L
Sbjct: 296 -ARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKV 448
+HVAA +G V+ L++ G +Q+ G LH A G D + L S G +V
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG-----EV 78
Query: 449 QD-SAGWLPLHEAANHGHTDIVQALVSAGAE 478
G P+H A TD+V ALV E
Sbjct: 79 HSLWHGQKPIHLAVXANKTDLVVALVEGAKE 109
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSA--------------GWLPLHEAANHG 429
+G+TALH+A R N TLV L++ G V+ + G LPL AA
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Query: 430 HTDIVQALVSAGADPND-KVQDSAGWLPLH 458
IV+ L+ P D +DS G LH
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLH 189
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
T L A A +L + LL+ G V DSAG PLH A GHT + + GAD
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG- 295
Query: 447 KVQDSAGWLPLHEAANHGHTDIVQAL 472
+DS G PL A + DIV L
Sbjct: 296 -ARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
T L A A +L + LL+ G V DSAG PLH A GHT + + GAD
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD--L 294
Query: 447 KVQDSAGWLPLHEAANHGHTDIVQAL 472
+DS G PL A + DIV L
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLL 320
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 380 LEKPRGETALHVAAARGN-------------LTLVQSLLKQGHPVKVQ-DSAGWLPLHEA 425
+ P G T L +A+ G ++ + QG + Q D G LH A
Sbjct: 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64
Query: 426 ANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
A + +D + L+ A AD N +QD+ G PLH A + + Q L+
Sbjct: 65 ARYSRSDAAKRLLEASADAN--IQDNMGRTPLHAAVSADAQGVFQILI 110
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV-SAGAD 443
GETALH+AA + LL+ +QD+ G PLH A + + Q L+ + D
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
+ ++ D G PL AA +++ L+++ A+V+
Sbjct: 117 LDARMHD--GTTPLILAARLAVEGMLEDLINSHADVN 151
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 380 LEKPRGETALHVAAARGN-------------LTLVQSLLKQGHPVKVQ-DSAGWLPLHEA 425
+ P G T L +A+ G ++ + QG + Q D G LH A
Sbjct: 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLA 64
Query: 426 ANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
A + +D + L+ A AD N +QD+ G PLH A + + Q L+
Sbjct: 65 AAYSRSDAAKRLLEASADAN--IQDNMGRTPLHAAVSADAQGVFQILI 110
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV-SAGAD 443
G TALH+AAA + LL+ +QD+ G PLH A + + Q L+ + D
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
+ ++ D G PL AA +++ L+++ A+V+
Sbjct: 117 LDARMHD--GTTPLILAARLAVEGMLEDLINSHADVN 151
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 380 LEKPRGETALHVAAARGN-------------LTLVQSLLKQGHPVKVQ-DSAGWLPLHEA 425
+ P G T L +A+ G ++ + QG + Q D G LH A
Sbjct: 6 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 65
Query: 426 ANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
A + +D + L+ A AD N +QD+ G PLH A + + Q L+
Sbjct: 66 ARYSRSDAAKRLLEASADAN--IQDNMGRTPLHAAVSADAQGVFQILI 111
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV-SAGAD 443
GETALH+AA + LL+ +QD+ G PLH A + + Q L+ + D
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 117
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
+ ++ D G PL AA +++ L+++ A+V+
Sbjct: 118 LDARMHD--GTTPLILAARLAVEGMLEDLINSHADVN 152
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 399 TLVQSLLKQGHPVKVQ-DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPL 457
++ + QG + Q D G LH AA + +D + L+ A AD N +QD+ G PL
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN--IQDNMGRTPL 62
Query: 458 HEAANHGHTDIVQALV 473
H A + + Q L+
Sbjct: 63 HAAVSADAQGVFQILI 78
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA-D 443
GETALH+AA + LL+ +QD+ G PLH A + + Q L+ A D
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
+ ++ D G PL AA +++ L+++ A+V+
Sbjct: 85 LDARMHD--GTTPLILAARLAVEGMLEDLINSHADVN 119
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV-SAGAD 443
GETALH+AA + LL+ +QD+ G PLH A + + Q L+ + D
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATD 81
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
+ ++ D G PL AA +++ L+++ A+V+
Sbjct: 82 LDARMHD--GTTPLILAARLALEGMLEDLINSHADVN 116
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 418 GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
G PLH A H ++V+ L AGAD N K + + G PLH A +++ L+ AGA
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLN-KPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 478 EVS 480
+ +
Sbjct: 217 DPT 219
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPV-KVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
G T LHVA + +V+ L G + K + + G PLH A +++ L+ AGAD
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 444 PNDKVQDSAGWLPLHEA 460
P ++ G PL A
Sbjct: 218 PTARMY--GGRTPLGSA 232
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEA 425
G+TALH+AA G + V+ L G V V + G LH A
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 418 GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
G PLH A H ++V+ L AGAD N K + + G PLH A +++ L+ AGA
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLN-KPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 478 EVS 480
+ +
Sbjct: 217 DPT 219
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPV-KVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
G T LHVA + +V+ L G + K + + G PLH A +++ L+ AGAD
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 444 PNDKVQDSAGWLPLHEA 460
P ++ G PL A
Sbjct: 218 PTARMY--GGRTPLGSA 232
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEA 425
G+TALH+AA G + V+ L G V V + G LH A
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQ---------DSAGW-----LPLHEAANHG 429
RG+TALH+A R V+ L+++G V Q D G+ LPL AA
Sbjct: 92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151
Query: 430 HTDIVQALVSAGADPND-KVQDSAGWLPLH 458
IV L G D + QDS G LH
Sbjct: 152 QPHIVHYLTENGHKQADLRRQDSRGNTVLH 181
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV-SAGAD 443
GET+LH+AA + LL G QD+ G PLH A + Q L+ + +
Sbjct: 51 GETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATN 110
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N ++ D G PL AA +V+ L++A A+++
Sbjct: 111 LNARMHD--GTTPLILAARLAIEGMVEDLITADADIN 145
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G+TALH AAA N V LL QD PL AA G + +AL+ A
Sbjct: 151 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA-- 208
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
N ++ D LP A+ H DIV+ L
Sbjct: 209 NREITDHMDRLPRDVASERLHHDIVRLL 236
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 18/105 (17%)
Query: 385 GETALHVAAARGN---------------LTLVQSLLKQGHPVKV-QDSAGWLPLHEAANH 428
G T L +AA RG ++ LL QG + D G LH AA
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 429 GHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
D + L+ AGAD N QD+ G PLH A + Q L+
Sbjct: 62 ARADAAKRLLDAGADANS--QDNTGRTPLHAAVAADAMGVFQILL 104
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 21/93 (22%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQ---------DSAGW-----LPLHEAANHG 429
RG+TALH+A R V+ L+ QG V Q D G+ LPL AA
Sbjct: 90 RGQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 149
Query: 430 HTDIVQALVSAGADPNDKV----QDSAGWLPLH 458
IV L +P+ K QDS G LH
Sbjct: 150 QPHIVNYLTE---NPHKKADMRRQDSRGNTVLH 179
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWL-PLHEAANHGHTDIVQALVSAGAD 443
G TAL A G+ V+ L + G + +D G L LH AA + ++V+ALV GAD
Sbjct: 77 GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 136
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN 445
ET AA + + + LL+ V D G L A G V+ L AGAD +
Sbjct: 46 ETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ G LH AA + ++V+ALV GA++
Sbjct: 105 HR-DMRGGLTALHMAAGYVRPEVVEALVELGADI 137
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWL-PLHEAANHGHTDIVQALVSAGAD 443
G TAL A G+ V+ L + G + +D G L LH AA + ++V+ALV GAD
Sbjct: 76 GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 135
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN 445
ET AA + + + LL+ V D G L A G V+ L AGAD +
Sbjct: 45 ETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ G LH AA + ++V+ALV GA++
Sbjct: 104 HR-DMRGGLTALHMAAGYVRPEVVEALVELGADI 136
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 21/179 (11%)
Query: 56 AVDYFNKELRLHARNFPE---AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112
AV+++ + L+L R+ + + G +G+ Y L F+ H++ L +AR+ D
Sbjct: 202 AVEFYQENLKL-MRDLGDRGAQGRACGNLGNTYYLL-GDFQAAIEHHQERLRIAREFGDR 259
Query: 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA-------SCYISLAQTYKDN 165
R ++ + + A L+ L +L SCY SL TY
Sbjct: 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLA--LAVELGEREVEAQSCY-SLGNTYTLL 316
Query: 166 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQN 224
++N A++Y N+ L + E +GE + L + HE+AL A Q+
Sbjct: 317 HEFNTAIEYHNRHLAI----AQELGDRIGEARACWSLGNA--HSAIGGHERALKYAEQH 369
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQS 97
SCY SL TY ++N A++Y N+ L + E +GE + L I
Sbjct: 305 SCY-SLGNTYTLLHEFNTAIEYHNRHLAI----AQELGDRIGEARACWSLGNAHSAI--G 357
Query: 98 THEKALDLARQN 109
HE+AL A Q+
Sbjct: 358 GHERALKYAEQH 369
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAA 426
G+T L++AA GN+++V +LL G + + +G P+ A
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461
+ QDS G L+ AA G+ IV AL+ GADP + + +G P+ A
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADP--FIANKSGLRPVDFGA 324
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
D+ G PL+ A ++ +I +AL+ GAD N +Q+S P A G T+I+ ++
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALIDRGADIN--LQNSISDSPYLYAGAQGRTEILAYML 92
>pdb|3HVW|A Chain A, Crystal Structure Of The Ggdef Domain Of The Pa2567
Protein From Pseudomonas Aeruginosa, Northeast
Structural Genomics Consortium Target Par365c
Length = 176
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 407 QGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGW 454
+G P+K G LPL + G D ++ +VSA D D+ GW
Sbjct: 111 RGIPIKANVGLGVLPLADDTLDGDQDWLRLVVSAADDARDR---GVGW 155
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 56 AVDYFNKELRLHARNFPEAV--KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113
AVD++ + L L A + G +G+ + L +F HE+ L +A++ D
Sbjct: 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKEFGDKA 224
Query: 114 LIRTVMRSIKKLYKKHDNLDSACSELH--TVLSSDLCKDLA----SCYISLAQTYKDNKQ 167
R ++ Y ++A SE + T+L + KD A SCY SL TY +
Sbjct: 225 AERRAYSNLGNAYIFLGEFETA-SEYYKKTLLLARQLKDRAVEAQSCY-SLGNTYTLLQD 282
Query: 168 YNLAVDYFNKELRL 181
Y A+DY K L +
Sbjct: 283 YEKAIDYHLKHLAI 296
>pdb|2DI3|A Chain A, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
pdb|2DI3|B Chain B, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
Length = 239
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 418 GWLPLHEAANHGHTDIVQALVSAGADPNDKVQD 450
GW LH +A G D+ +AL+ DP+ ++D
Sbjct: 107 GWAALHSSAERGDWDVAEALLEKMDDPSLPLED 139
>pdb|3G6I|A Chain A, Crystal Structure Of An Outer Membrane Protein, Part Of A
Putative Carbohydrate Binding Complex (Bt_1022) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.93 A
Resolution
Length = 204
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 102 ALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT 161
A+DL ++N+D K + +++ +K+ K D+ +E D+C +A+ Y L
Sbjct: 2 AVDLNKENRDPKYVESIVNRSQKIVDKLGLTDAKVAE-------DVCNVIANRYFELNDI 54
Query: 162 Y 162
Y
Sbjct: 55 Y 55
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG 82
SC ++LA Y NK Y A+D+ +K L++ N VK L ++G
Sbjct: 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN----VKALYKLG 129
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG 197
SC ++LA Y NK Y A+D+ +K L++ N VK L ++G
Sbjct: 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN----VKALYKLG 129
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 133 DSACSELHTVLSSDLCKDLASCYISLA-------QTYKDNKQYNLAVDYFNKELRLHARN 185
D C + T + + + S YI L + Y++ K+ +D +K R+
Sbjct: 165 DPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMR 224
Query: 186 FPEAVKTLGEIGDLYELQEKPFELV 210
+A+KTLG I ++ L PF LV
Sbjct: 225 EHKALKTLGIIMGVFTLCWLPFFLV 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,047,581
Number of Sequences: 62578
Number of extensions: 520235
Number of successful extensions: 2056
Number of sequences better than 100.0: 149
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1343
Number of HSP's gapped (non-prelim): 436
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)