Query psy875
Match_columns 480
No_of_seqs 615 out of 4637
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 18:18:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4412|consensus 100.0 6.7E-29 1.5E-33 194.7 10.2 155 307-479 31-198 (226)
2 KOG4412|consensus 99.9 2.9E-26 6.4E-31 179.9 8.3 129 334-480 36-166 (226)
3 KOG4626|consensus 99.9 5.1E-25 1.1E-29 204.6 15.1 228 6-258 221-449 (966)
4 KOG4626|consensus 99.9 1E-24 2.2E-29 202.7 16.5 234 3-261 252-486 (966)
5 PHA02791 ankyrin-like protein; 99.9 1.1E-24 2.3E-29 196.1 15.1 148 313-480 60-221 (284)
6 PHA02791 ankyrin-like protein; 99.9 8.2E-24 1.8E-28 190.4 16.4 148 311-480 27-187 (284)
7 PHA02859 ankyrin repeat protei 99.9 7.4E-23 1.6E-27 177.9 16.2 154 310-480 17-186 (209)
8 KOG1840|consensus 99.9 4.6E-21 1E-25 182.8 29.1 241 33-275 237-494 (508)
9 PHA02875 ankyrin repeat protei 99.9 1.9E-22 4E-27 196.2 17.5 151 313-480 34-195 (413)
10 KOG0509|consensus 99.9 2.4E-23 5.3E-28 195.2 9.0 154 309-479 73-238 (600)
11 PHA02875 ankyrin repeat protei 99.9 1.9E-22 4E-27 196.2 15.5 150 313-480 67-229 (413)
12 KOG0508|consensus 99.9 5E-23 1.1E-27 185.2 9.7 128 334-479 82-209 (615)
13 KOG0509|consensus 99.9 2.9E-22 6.4E-27 188.0 14.7 155 308-479 49-204 (600)
14 PHA02874 ankyrin repeat protei 99.9 7.7E-22 1.7E-26 192.7 17.8 157 322-480 54-217 (434)
15 PHA03100 ankyrin repeat protei 99.9 6.5E-22 1.4E-26 196.7 15.6 150 313-480 140-310 (480)
16 PHA02716 CPXV016; CPX019; EVM0 99.9 6.3E-22 1.4E-26 197.5 15.0 152 311-480 174-393 (764)
17 PHA02743 Viral ankyrin protein 99.9 1.1E-21 2.3E-26 164.1 13.9 138 325-480 9-155 (166)
18 PHA02878 ankyrin repeat protei 99.9 1.1E-21 2.5E-26 193.8 16.5 102 377-480 159-262 (477)
19 PHA03100 ankyrin repeat protei 99.9 1.2E-21 2.6E-26 194.8 16.3 150 313-480 105-277 (480)
20 PHA02795 ankyrin-like protein; 99.9 2E-21 4.4E-26 181.4 14.9 145 322-480 137-289 (437)
21 KOG1840|consensus 99.9 1.4E-19 3E-24 172.7 27.4 239 30-271 192-448 (508)
22 PHA02878 ankyrin repeat protei 99.9 6.7E-21 1.4E-25 188.3 15.9 139 322-480 153-294 (477)
23 PHA02798 ankyrin-like protein; 99.9 5.9E-21 1.3E-25 189.0 15.2 152 312-480 107-318 (489)
24 KOG0508|consensus 99.9 1.2E-21 2.6E-26 176.4 9.0 144 312-474 82-236 (615)
25 PHA03095 ankyrin-like protein; 99.9 1.2E-20 2.7E-25 187.1 16.8 168 310-479 113-316 (471)
26 KOG1130|consensus 99.9 1.9E-20 4.1E-25 166.6 15.7 262 5-268 57-352 (639)
27 PHA02874 ankyrin repeat protei 99.9 1.5E-20 3.2E-25 183.7 16.7 150 313-480 11-184 (434)
28 PHA02989 ankyrin repeat protei 99.8 2.3E-20 5.1E-25 185.0 16.2 152 310-478 104-314 (494)
29 PHA03095 ankyrin-like protein; 99.8 2E-20 4.4E-25 185.5 15.1 119 311-445 184-317 (471)
30 PHA02798 ankyrin-like protein; 99.8 3.1E-20 6.7E-25 183.9 16.0 142 323-480 96-285 (489)
31 PHA02741 hypothetical protein; 99.8 3E-20 6.6E-25 156.2 13.6 129 331-477 16-156 (169)
32 KOG0510|consensus 99.8 1E-20 2.2E-25 181.4 11.9 157 307-479 218-403 (929)
33 PHA02876 ankyrin repeat protei 99.8 3E-20 6.5E-25 191.7 16.3 152 311-480 304-470 (682)
34 PHA02716 CPXV016; CPX019; EVM0 99.8 2.5E-20 5.4E-25 186.2 14.6 144 319-480 159-346 (764)
35 KOG1130|consensus 99.8 5.9E-20 1.3E-24 163.4 15.4 235 30-266 48-310 (639)
36 PHA02884 ankyrin repeat protei 99.8 4.8E-20 1E-24 165.7 14.7 126 333-472 30-156 (300)
37 PHA02946 ankyin-like protein; 99.8 3.5E-20 7.5E-25 179.6 14.9 150 327-479 96-269 (446)
38 PHA02989 ankyrin repeat protei 99.8 6.7E-20 1.4E-24 181.7 15.3 142 322-480 94-283 (494)
39 PHA02859 ankyrin repeat protei 99.8 1.4E-19 2.9E-24 157.5 14.9 126 334-480 19-152 (209)
40 PHA02946 ankyin-like protein; 99.8 9.1E-20 2E-24 176.6 14.9 155 322-480 58-236 (446)
41 PHA02917 ankyrin-like protein; 99.8 5.3E-20 1.2E-24 185.0 13.7 151 310-479 64-256 (661)
42 PHA02795 ankyrin-like protein; 99.8 1.2E-19 2.6E-24 169.5 14.3 130 331-480 111-248 (437)
43 PLN03192 Voltage-dependent pot 99.8 1.6E-19 3.6E-24 188.6 16.0 137 324-480 546-682 (823)
44 KOG4177|consensus 99.8 1.1E-19 2.5E-24 185.0 12.4 169 308-478 434-631 (1143)
45 PHA02736 Viral ankyrin protein 99.8 2.5E-19 5.5E-24 148.7 11.8 97 382-480 52-153 (154)
46 KOG0502|consensus 99.8 1.2E-19 2.7E-24 147.3 9.5 132 325-475 149-280 (296)
47 KOG0510|consensus 99.8 1.9E-19 4.1E-24 172.8 11.2 166 311-479 184-367 (929)
48 PHA02876 ankyrin repeat protei 99.8 9.9E-19 2.2E-23 180.5 16.7 151 312-480 271-436 (682)
49 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-17 2.9E-22 170.1 24.2 212 34-263 328-574 (615)
50 KOG1126|consensus 99.8 1.8E-18 3.8E-23 163.6 15.3 236 4-260 318-586 (638)
51 KOG0512|consensus 99.8 1.4E-18 3E-23 135.9 11.7 123 335-474 62-185 (228)
52 KOG1155|consensus 99.8 2.3E-17 4.9E-22 149.3 21.0 204 38-259 331-535 (559)
53 KOG0502|consensus 99.8 2E-18 4.2E-23 140.4 12.2 147 314-480 107-253 (296)
54 KOG0514|consensus 99.8 4.4E-18 9.5E-23 148.7 12.6 149 308-474 262-428 (452)
55 TIGR00990 3a0801s09 mitochondr 99.8 7E-17 1.5E-21 164.8 23.5 173 33-220 287-462 (615)
56 TIGR02521 type_IV_pilW type IV 99.8 2.1E-16 4.6E-21 141.2 24.0 204 34-259 28-231 (234)
57 PF12796 Ank_2: Ankyrin repeat 99.8 6.3E-18 1.4E-22 126.2 11.3 86 389-480 1-86 (89)
58 KOG1126|consensus 99.8 1.2E-17 2.5E-22 158.1 15.2 201 36-260 420-620 (638)
59 COG3063 PilF Tfp pilus assembl 99.8 2.7E-16 5.8E-21 130.4 21.0 206 32-259 30-235 (250)
60 KOG0195|consensus 99.8 2.2E-18 4.8E-23 145.9 8.9 151 311-479 8-159 (448)
61 PHA02917 ankyrin-like protein; 99.8 9.7E-18 2.1E-22 168.8 15.2 150 311-480 29-223 (661)
62 PHA02730 ankyrin-like protein; 99.8 8.1E-18 1.7E-22 165.1 13.7 147 314-479 357-524 (672)
63 PLN03192 Voltage-dependent pot 99.7 2.1E-17 4.6E-22 172.9 15.1 126 335-480 524-649 (823)
64 PF12796 Ank_2: Ankyrin repeat 99.7 2.6E-17 5.7E-22 122.8 10.7 87 340-446 1-87 (89)
65 PHA02730 ankyrin-like protein; 99.7 2E-17 4.4E-22 162.3 12.7 143 322-480 26-182 (672)
66 KOG0505|consensus 99.7 1.2E-17 2.5E-22 153.9 9.7 136 327-480 64-258 (527)
67 KOG4177|consensus 99.7 1.7E-17 3.7E-22 169.3 11.8 170 309-480 402-600 (1143)
68 PHA02736 Viral ankyrin protein 99.7 2.2E-17 4.9E-22 136.9 9.0 126 305-445 8-153 (154)
69 KOG0514|consensus 99.7 1.8E-17 3.9E-22 145.0 8.0 128 329-475 261-395 (452)
70 PHA02743 Viral ankyrin protein 99.7 1.3E-16 2.8E-21 133.5 11.5 113 325-454 46-162 (166)
71 PHA02792 ankyrin-like protein; 99.7 2.1E-16 4.5E-21 153.6 14.1 129 335-479 338-479 (631)
72 PRK11788 tetratricopeptide rep 99.7 7E-15 1.5E-19 142.4 24.7 206 36-259 68-277 (389)
73 KOG1155|consensus 99.7 4.8E-15 1E-19 134.5 21.3 205 39-263 264-498 (559)
74 KOG0512|consensus 99.7 1.9E-16 4.2E-21 124.0 10.1 132 315-464 76-209 (228)
75 PRK11788 tetratricopeptide rep 99.7 1.4E-14 3E-19 140.3 25.5 208 37-260 35-243 (389)
76 PHA02741 hypothetical protein; 99.7 2.8E-16 6.2E-21 132.1 11.5 97 382-480 18-126 (169)
77 KOG0195|consensus 99.7 1.3E-16 2.8E-21 135.3 8.5 101 378-480 27-127 (448)
78 PHA02884 ankyrin repeat protei 99.7 4.9E-16 1.1E-20 139.9 12.8 135 318-477 48-186 (300)
79 PHA02792 ankyrin-like protein; 99.7 3.4E-16 7.3E-21 152.1 11.1 146 312-475 35-239 (631)
80 TIGR00870 trp transient-recept 99.7 1.8E-16 3.9E-21 165.1 9.8 141 334-476 126-280 (743)
81 PRK11189 lipoprotein NlpI; Pro 99.7 1.2E-14 2.6E-19 133.9 20.7 205 34-261 61-266 (296)
82 KOG1173|consensus 99.7 3.6E-15 7.7E-20 138.6 16.2 212 30-261 305-519 (611)
83 cd00204 ANK ankyrin repeats; 99.6 4.4E-15 9.5E-20 118.9 14.2 122 334-473 5-126 (126)
84 KOG4214|consensus 99.6 1.2E-15 2.7E-20 106.2 9.0 102 339-459 5-106 (117)
85 KOG0547|consensus 99.6 2.3E-14 5.1E-19 130.9 19.9 207 38-264 361-570 (606)
86 KOG3676|consensus 99.6 1.3E-15 2.7E-20 147.6 11.8 165 311-475 140-330 (782)
87 PRK15174 Vi polysaccharide exp 99.6 7.2E-14 1.6E-18 142.5 23.4 64 35-103 108-171 (656)
88 PRK09782 bacteriophage N4 rece 99.6 6.9E-14 1.5E-18 146.2 22.8 198 39-262 511-708 (987)
89 KOG1173|consensus 99.6 3.2E-14 6.9E-19 132.4 16.9 201 3-220 312-518 (611)
90 PRK11447 cellulose synthase su 99.6 1.4E-13 3E-18 150.0 24.6 205 42-260 274-524 (1157)
91 KOG4214|consensus 99.6 3.4E-15 7.4E-20 104.0 7.7 90 387-479 4-93 (117)
92 PRK15174 Vi polysaccharide exp 99.6 2.9E-13 6.4E-18 138.1 24.8 207 36-263 143-384 (656)
93 KOG1941|consensus 99.6 3.3E-13 7.1E-18 119.0 21.3 244 20-266 66-326 (518)
94 TIGR00870 trp transient-recept 99.6 1.4E-14 3E-19 151.0 14.8 155 306-480 20-202 (743)
95 KOG0505|consensus 99.6 1.8E-15 4E-20 139.6 7.1 152 309-462 68-273 (527)
96 PRK12370 invasion protein regu 99.6 2.3E-13 4.9E-18 136.6 22.9 197 39-257 260-467 (553)
97 PRK09782 bacteriophage N4 rece 99.6 1.4E-13 3E-18 144.0 20.3 197 39-260 544-740 (987)
98 PRK11447 cellulose synthase su 99.6 1.9E-13 4.1E-18 148.9 22.2 210 38-259 462-739 (1157)
99 KOG0507|consensus 99.6 4E-15 8.7E-20 142.3 7.4 152 309-479 77-247 (854)
100 PRK12370 invasion protein regu 99.6 5.3E-13 1.1E-17 134.0 22.9 202 34-260 292-502 (553)
101 TIGR02917 PEP_TPR_lipo putativ 99.6 3.1E-13 6.8E-18 145.3 22.9 196 37-258 703-898 (899)
102 COG3063 PilF Tfp pilus assembl 99.6 2.5E-13 5.4E-18 112.9 16.5 169 73-259 33-201 (250)
103 KOG1129|consensus 99.6 1.5E-13 3.3E-18 119.5 15.1 230 3-261 230-459 (478)
104 KOG0507|consensus 99.6 1.1E-14 2.3E-19 139.5 8.6 142 314-475 29-170 (854)
105 KOG1941|consensus 99.5 1.8E-12 4E-17 114.3 21.6 228 37-266 122-366 (518)
106 TIGR02521 type_IV_pilW type IV 99.5 9.3E-13 2E-17 117.6 20.5 200 3-219 31-231 (234)
107 TIGR02917 PEP_TPR_lipo putativ 99.5 9.4E-13 2E-17 141.6 24.1 204 38-259 23-255 (899)
108 PF14938 SNAP: Soluble NSF att 99.5 1.1E-12 2.4E-17 119.9 20.7 223 30-256 28-262 (282)
109 PRK11189 lipoprotein NlpI; Pro 99.5 9.7E-13 2.1E-17 121.2 20.3 199 2-220 63-265 (296)
110 COG0666 Arp FOG: Ankyrin repea 99.5 1.9E-13 4E-18 122.1 13.4 129 330-476 67-203 (235)
111 TIGR03302 OM_YfiO outer membra 99.5 2.5E-12 5.3E-17 115.1 20.4 180 32-218 28-230 (235)
112 KOG1125|consensus 99.5 7E-13 1.5E-17 124.1 17.0 203 41-265 289-532 (579)
113 COG2956 Predicted N-acetylgluc 99.5 1E-11 2.2E-16 108.2 22.1 212 32-260 64-278 (389)
114 KOG0547|consensus 99.5 1.1E-12 2.3E-17 120.2 16.4 182 26-223 383-569 (606)
115 cd00204 ANK ankyrin repeats; 99.5 4.8E-13 1E-17 106.9 12.7 96 382-479 4-99 (126)
116 KOG2002|consensus 99.5 4.9E-12 1.1E-16 125.0 21.1 208 37-260 270-481 (1018)
117 PF13857 Ank_5: Ankyrin repeat 99.5 4.8E-14 1E-18 93.8 4.9 55 404-460 1-56 (56)
118 KOG2003|consensus 99.5 3.1E-12 6.7E-17 116.1 17.4 199 37-259 490-688 (840)
119 PF14938 SNAP: Soluble NSF att 99.5 7.6E-12 1.6E-16 114.4 20.5 183 74-259 34-224 (282)
120 KOG1125|consensus 99.5 3.5E-12 7.6E-17 119.5 17.3 213 29-253 311-564 (579)
121 KOG0515|consensus 99.5 1.9E-13 4.1E-18 125.4 8.7 89 389-479 554-642 (752)
122 PF13637 Ank_4: Ankyrin repeat 99.5 2E-13 4.4E-18 90.4 6.5 54 418-473 1-54 (54)
123 PF13637 Ank_4: Ankyrin repeat 99.5 2.2E-13 4.7E-18 90.3 6.6 54 385-438 1-54 (54)
124 TIGR03302 OM_YfiO outer membra 99.5 3.2E-11 6.8E-16 107.9 22.8 179 72-258 30-230 (235)
125 KOG0515|consensus 99.5 2.5E-13 5.5E-18 124.6 9.1 127 331-474 545-673 (752)
126 KOG2002|consensus 99.4 1.2E-11 2.5E-16 122.4 20.9 214 34-261 304-526 (1018)
127 KOG0548|consensus 99.4 1.8E-11 3.9E-16 113.9 20.7 212 33-261 220-456 (539)
128 KOG3676|consensus 99.4 5.7E-13 1.2E-17 129.5 11.2 141 325-478 132-298 (782)
129 PTZ00322 6-phosphofructo-2-kin 99.4 1E-12 2.2E-17 133.8 12.2 87 387-475 84-170 (664)
130 PF13429 TPR_15: Tetratricopep 99.4 2.7E-12 5.9E-17 118.0 13.1 197 39-259 80-276 (280)
131 PTZ00322 6-phosphofructo-2-kin 99.4 1.8E-12 4E-17 131.8 11.3 105 339-461 85-196 (664)
132 KOG1129|consensus 99.4 5.6E-12 1.2E-16 109.9 11.9 198 40-259 226-423 (478)
133 PF13857 Ank_5: Ankyrin repeat 99.4 6.6E-13 1.4E-17 88.3 4.5 44 382-425 13-56 (56)
134 PRK10049 pgaA outer membrane p 99.3 2E-10 4.4E-15 119.9 23.4 206 37-260 237-456 (765)
135 COG2956 Predicted N-acetylgluc 99.3 4.9E-10 1.1E-14 98.0 20.9 203 41-259 39-242 (389)
136 KOG1710|consensus 99.3 6.3E-12 1.4E-16 107.0 8.9 114 309-437 18-131 (396)
137 KOG0548|consensus 99.3 5.3E-10 1.1E-14 104.3 22.0 195 36-244 256-473 (539)
138 KOG2076|consensus 99.3 3.3E-10 7E-15 111.6 21.2 96 152-257 414-509 (895)
139 cd05804 StaR_like StaR_like; a 99.3 3E-10 6.4E-15 108.6 20.3 208 34-257 3-212 (355)
140 KOG1710|consensus 99.3 2.8E-11 6.1E-16 103.1 11.4 122 335-474 11-133 (396)
141 PF13429 TPR_15: Tetratricopep 99.3 1.7E-11 3.7E-16 112.7 10.9 201 36-260 43-243 (280)
142 PRK04841 transcriptional regul 99.3 3.7E-09 8E-14 113.9 30.1 229 35-266 529-766 (903)
143 KOG4369|consensus 99.3 3.5E-12 7.5E-17 126.8 5.8 152 314-480 768-919 (2131)
144 KOG2003|consensus 99.3 1.4E-09 2.9E-14 99.2 21.2 200 33-257 520-719 (840)
145 COG0666 Arp FOG: Ankyrin repea 99.3 5.1E-11 1.1E-15 106.3 12.2 97 383-480 71-174 (235)
146 PRK04841 transcriptional regul 99.2 1.1E-08 2.3E-13 110.4 30.5 227 36-264 451-724 (903)
147 TIGR00540 hemY_coli hemY prote 99.2 2.7E-09 5.8E-14 103.4 23.1 213 42-267 158-406 (409)
148 KOG0624|consensus 99.2 5E-09 1.1E-13 92.4 22.1 208 37-266 38-275 (504)
149 KOG0550|consensus 99.2 3.6E-10 7.8E-15 101.9 15.3 178 35-222 167-352 (486)
150 KOG4369|consensus 99.2 5.2E-12 1.1E-16 125.6 3.8 132 331-480 752-884 (2131)
151 KOG0550|consensus 99.2 4.1E-10 9E-15 101.5 15.1 217 35-263 47-353 (486)
152 PRK10049 pgaA outer membrane p 99.2 2.7E-09 5.9E-14 111.5 23.6 204 35-259 47-300 (765)
153 PRK15359 type III secretion sy 99.2 2.8E-10 6.1E-15 92.6 12.7 109 96-220 13-121 (144)
154 PRK15359 type III secretion sy 99.2 4.3E-10 9.3E-15 91.5 13.4 126 57-202 13-138 (144)
155 PLN02789 farnesyltranstransfer 99.2 4.1E-09 9E-14 97.0 21.2 202 34-259 34-249 (320)
156 PRK10747 putative protoheme IX 99.2 2.4E-09 5.2E-14 103.2 19.6 196 44-261 160-391 (398)
157 KOG1174|consensus 99.2 1.1E-09 2.4E-14 98.8 15.0 199 38-261 301-501 (564)
158 cd05804 StaR_like StaR_like; a 99.2 1.7E-08 3.7E-13 96.4 24.3 224 35-267 112-343 (355)
159 PRK10370 formate-dependent nit 99.1 4.2E-09 9.2E-14 90.5 16.9 121 90-223 53-176 (198)
160 PRK14574 hmsH outer membrane p 99.1 9.3E-09 2E-13 106.0 20.6 199 35-258 32-230 (822)
161 PRK15179 Vi polysaccharide bio 99.1 1E-08 2.2E-13 103.8 20.3 166 41-221 53-218 (694)
162 PLN02789 farnesyltranstransfer 99.1 1.7E-08 3.8E-13 92.9 20.0 190 31-244 65-268 (320)
163 PF13424 TPR_12: Tetratricopep 99.1 6.7E-10 1.4E-14 80.2 8.5 72 150-222 3-77 (78)
164 PRK10370 formate-dependent nit 99.1 5.8E-09 1.3E-13 89.6 15.6 121 128-261 51-174 (198)
165 PF13525 YfiO: Outer membrane 99.1 3.1E-08 6.8E-13 85.8 20.2 169 35-210 3-197 (203)
166 PRK15179 Vi polysaccharide bio 99.1 5.1E-09 1.1E-13 105.9 17.4 140 32-184 81-220 (694)
167 KOG2076|consensus 99.0 6.2E-08 1.3E-12 96.0 22.6 205 37-259 139-344 (895)
168 CHL00033 ycf3 photosystem I as 99.0 9.1E-09 2E-13 86.6 14.9 126 90-224 13-146 (168)
169 KOG0553|consensus 99.0 4.5E-09 9.7E-14 91.6 12.8 102 112-220 77-178 (304)
170 PRK10866 outer membrane biogen 99.0 5.9E-08 1.3E-12 86.1 20.3 173 36-215 31-236 (243)
171 TIGR00540 hemY_coli hemY prote 99.0 1.2E-07 2.5E-12 92.0 23.2 28 232-259 336-363 (409)
172 KOG4162|consensus 99.0 1E-07 2.3E-12 92.9 22.1 212 38-266 479-789 (799)
173 PRK14720 transcript cleavage f 99.0 4E-08 8.6E-13 100.4 20.3 143 29-181 23-178 (906)
174 PLN03218 maturation of RBCL 1; 99.0 1E-07 2.2E-12 101.3 24.1 131 118-258 616-746 (1060)
175 KOG0553|consensus 99.0 1.3E-08 2.8E-13 88.8 14.0 116 76-204 82-197 (304)
176 PF13424 TPR_12: Tetratricopep 99.0 8.8E-09 1.9E-13 74.3 10.9 77 186-263 1-78 (78)
177 PRK10747 putative protoheme IX 99.0 1.4E-07 2.9E-12 91.1 22.3 192 44-260 125-357 (398)
178 KOG0624|consensus 99.0 1.4E-07 3.1E-12 83.4 19.9 205 38-260 156-370 (504)
179 COG5010 TadD Flp pilus assembl 99.0 5.6E-08 1.2E-12 83.2 16.5 163 71-254 63-225 (257)
180 TIGR02552 LcrH_SycD type III s 99.0 2E-08 4.4E-13 81.2 13.4 111 98-221 5-115 (135)
181 PF09976 TPR_21: Tetratricopep 99.0 1E-07 2.3E-12 77.9 17.4 119 90-217 25-144 (145)
182 PLN03218 maturation of RBCL 1; 98.9 2E-07 4.4E-12 99.1 23.9 203 38-259 580-782 (1060)
183 CHL00033 ycf3 photosystem I as 98.9 2.1E-08 4.5E-13 84.4 13.5 138 131-270 14-152 (168)
184 PF13606 Ank_3: Ankyrin repeat 98.9 1.2E-09 2.5E-14 61.6 3.9 29 452-480 1-29 (30)
185 KOG1174|consensus 98.9 9.1E-08 2E-12 86.7 17.9 172 30-220 327-500 (564)
186 PF13525 YfiO: Outer membrane 98.9 4.4E-07 9.5E-12 78.7 21.7 170 74-251 4-198 (203)
187 TIGR02552 LcrH_SycD type III s 98.9 4.7E-08 1E-12 79.0 14.6 113 59-184 5-117 (135)
188 KOG1127|consensus 98.9 9.8E-08 2.1E-12 95.3 19.2 222 29-266 484-706 (1238)
189 PRK10866 outer membrane biogen 98.9 5E-07 1.1E-11 80.2 22.2 175 75-257 32-238 (243)
190 PF09976 TPR_21: Tetratricopep 98.9 1.4E-07 3.1E-12 77.1 17.1 121 128-257 23-144 (145)
191 PF12895 Apc3: Anaphase-promot 98.9 1.1E-08 2.3E-13 74.9 9.3 83 129-217 2-84 (84)
192 PRK15363 pathogenicity island 98.9 3.2E-08 7E-13 79.1 12.4 103 113-222 32-134 (157)
193 KOG1127|consensus 98.9 1.5E-07 3.3E-12 94.0 19.5 191 50-262 471-661 (1238)
194 KOG3060|consensus 98.9 1.5E-06 3.2E-11 74.0 22.6 173 32-222 47-222 (289)
195 PRK02603 photosystem I assembl 98.9 6E-08 1.3E-12 81.9 14.7 101 33-141 31-131 (172)
196 KOG1586|consensus 98.9 5.7E-07 1.2E-11 75.4 19.6 169 90-260 48-224 (288)
197 KOG1586|consensus 98.9 1.2E-06 2.6E-11 73.6 21.5 187 31-220 28-224 (288)
198 KOG0818|consensus 98.9 1.2E-08 2.7E-13 93.6 9.9 85 388-474 136-221 (669)
199 PRK02603 photosystem I assembl 98.9 1.9E-07 4.2E-12 78.8 16.7 106 111-220 30-142 (172)
200 PRK15363 pathogenicity island 98.9 1.2E-07 2.6E-12 75.9 14.0 99 36-145 34-132 (157)
201 KOG1128|consensus 98.9 4.8E-08 1E-12 94.6 13.9 189 44-263 431-619 (777)
202 PF12569 NARP1: NMDA receptor- 98.8 1.3E-06 2.8E-11 85.5 23.7 92 153-255 195-286 (517)
203 COG5010 TadD Flp pilus assembl 98.8 2.4E-07 5.2E-12 79.4 16.0 158 41-216 70-227 (257)
204 KOG1585|consensus 98.8 1.4E-06 3E-11 73.7 19.5 202 54-257 10-216 (308)
205 PF13606 Ank_3: Ankyrin repeat 98.8 7E-09 1.5E-13 58.4 3.9 29 417-445 1-29 (30)
206 PLN03081 pentatricopeptide (PP 98.8 9.2E-08 2E-12 99.6 15.2 201 38-259 326-556 (697)
207 KOG3060|consensus 98.8 3.2E-06 7E-11 72.0 20.8 194 49-262 24-222 (289)
208 KOG0818|consensus 98.8 2.2E-08 4.9E-13 91.9 8.5 91 335-440 132-222 (669)
209 TIGR02795 tol_pal_ybgF tol-pal 98.8 1.3E-07 2.8E-12 74.5 12.0 104 39-147 4-107 (119)
210 PLN03081 pentatricopeptide (PP 98.8 4.1E-07 9E-12 94.8 18.5 195 39-255 292-486 (697)
211 PF13414 TPR_11: TPR repeat; P 98.8 6E-08 1.3E-12 68.0 8.5 64 152-220 3-67 (69)
212 TIGR02795 tol_pal_ybgF tol-pal 98.7 1.7E-07 3.7E-12 73.8 11.8 103 117-221 3-106 (119)
213 KOG1156|consensus 98.7 1.4E-06 3.1E-11 83.5 19.7 205 35-259 39-247 (700)
214 PRK14574 hmsH outer membrane p 98.7 2.4E-06 5.3E-11 88.5 23.1 206 37-257 292-510 (822)
215 PF13414 TPR_11: TPR repeat; P 98.7 9.4E-08 2E-12 67.0 8.9 65 37-106 3-68 (69)
216 PLN03088 SGT1, suppressor of 98.7 1.4E-07 3E-12 89.1 12.8 95 119-220 5-99 (356)
217 PF12895 Apc3: Anaphase-promot 98.7 9.5E-08 2.1E-12 69.9 9.0 84 164-257 1-84 (84)
218 KOG2376|consensus 98.7 2.8E-06 6.1E-11 80.7 20.7 197 45-259 20-252 (652)
219 PF12569 NARP1: NMDA receptor- 98.7 4.6E-06 1E-10 81.7 22.9 207 39-261 6-258 (517)
220 COG3071 HemY Uncharacterized e 98.7 9E-06 1.9E-10 73.9 22.8 212 32-261 113-391 (400)
221 KOG1156|consensus 98.7 2.5E-06 5.3E-11 82.0 19.5 202 39-258 9-212 (700)
222 COG4785 NlpI Lipoprotein NlpI, 98.7 5.6E-07 1.2E-11 74.6 13.2 99 1-105 63-162 (297)
223 KOG0506|consensus 98.7 2.5E-08 5.3E-13 91.2 5.7 91 383-475 504-595 (622)
224 cd00189 TPR Tetratricopeptide 98.7 2.1E-07 4.6E-12 69.6 10.1 96 118-220 2-97 (100)
225 KOG0543|consensus 98.7 3.7E-07 8E-12 83.3 13.1 133 116-259 208-354 (397)
226 PLN03077 Protein ECB2; Provisi 98.7 2.7E-05 5.8E-10 83.4 29.6 127 117-257 324-450 (857)
227 PF00023 Ank: Ankyrin repeat H 98.7 3.4E-08 7.4E-13 57.5 4.1 29 452-480 1-29 (33)
228 KOG0705|consensus 98.7 8.3E-08 1.8E-12 90.0 8.7 97 337-445 625-721 (749)
229 PLN03088 SGT1, suppressor of 98.7 4.4E-07 9.5E-12 85.8 13.9 113 80-205 7-119 (356)
230 cd00189 TPR Tetratricopeptide 98.6 3.9E-07 8.5E-12 68.1 10.7 94 40-144 3-96 (100)
231 PF00023 Ank: Ankyrin repeat H 98.6 6.5E-08 1.4E-12 56.3 4.4 28 418-445 2-29 (33)
232 KOG1585|consensus 98.6 1.7E-05 3.8E-10 67.2 20.2 163 36-200 70-238 (308)
233 KOG0783|consensus 98.6 1.9E-08 4.2E-13 98.1 3.2 79 382-462 49-128 (1267)
234 KOG0522|consensus 98.6 1.2E-07 2.5E-12 88.5 7.9 87 387-475 22-110 (560)
235 PRK14720 transcript cleavage f 98.6 1.9E-06 4.1E-11 88.4 17.0 154 35-222 114-285 (906)
236 COG4783 Putative Zn-dependent 98.6 4E-06 8.7E-11 78.2 17.4 147 76-259 307-453 (484)
237 KOG0495|consensus 98.6 1E-05 2.3E-10 77.9 19.5 200 39-263 586-785 (913)
238 KOG0705|consensus 98.5 2.5E-07 5.4E-12 86.9 8.3 88 389-478 628-719 (749)
239 KOG1128|consensus 98.5 1.5E-06 3.3E-11 84.5 13.8 167 45-228 458-624 (777)
240 COG4783 Putative Zn-dependent 98.5 7.2E-06 1.6E-10 76.6 17.5 152 35-221 304-455 (484)
241 KOG2300|consensus 98.5 3.9E-05 8.4E-10 71.5 21.9 224 37-266 273-520 (629)
242 PF12688 TPR_5: Tetratrico pep 98.5 2.6E-06 5.7E-11 65.9 12.3 63 40-104 4-66 (120)
243 KOG0495|consensus 98.5 2.4E-05 5.2E-10 75.5 20.9 200 38-257 652-877 (913)
244 KOG0543|consensus 98.5 4.1E-06 8.9E-11 76.6 14.8 131 81-218 214-353 (397)
245 KOG2300|consensus 98.5 0.00018 3.9E-09 67.2 25.2 212 39-256 325-552 (629)
246 KOG0782|consensus 98.5 5.7E-07 1.2E-11 84.3 9.0 93 380-474 894-988 (1004)
247 PF12688 TPR_5: Tetratrico pep 98.5 3.4E-06 7.4E-11 65.3 11.8 101 117-219 2-103 (120)
248 PLN03077 Protein ECB2; Provisi 98.5 7.1E-06 1.5E-10 87.8 18.5 191 42-259 529-719 (857)
249 PRK10803 tol-pal system protei 98.5 3.5E-06 7.6E-11 75.4 13.4 91 90-183 157-248 (263)
250 PRK10803 tol-pal system protei 98.5 2.2E-06 4.9E-11 76.6 11.9 103 117-221 143-247 (263)
251 KOG4162|consensus 98.5 5.2E-05 1.1E-09 74.6 21.8 209 39-262 359-578 (799)
252 KOG0506|consensus 98.4 2.2E-07 4.8E-12 85.2 5.1 92 334-441 504-596 (622)
253 PRK10153 DNA-binding transcrip 98.4 9.8E-06 2.1E-10 80.0 17.0 139 36-185 338-486 (517)
254 KOG4340|consensus 98.4 3.2E-05 7E-10 67.6 17.6 194 38-252 45-262 (459)
255 KOG3617|consensus 98.4 7.2E-05 1.6E-09 74.1 21.0 220 36-257 857-1171(1416)
256 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00018 3.9E-09 63.7 23.0 207 37-262 59-267 (291)
257 PF13432 TPR_16: Tetratricopep 98.4 1.9E-06 4.2E-11 59.4 7.7 57 158-219 3-59 (65)
258 PF13432 TPR_16: Tetratricopep 98.4 1.8E-06 3.9E-11 59.6 7.5 62 121-184 2-63 (65)
259 KOG0783|consensus 98.4 3.8E-07 8.2E-12 89.3 5.1 89 303-428 41-129 (1267)
260 COG4105 ComL DNA uptake lipopr 98.4 0.0002 4.3E-09 62.1 20.6 173 75-255 34-228 (254)
261 COG4785 NlpI Lipoprotein NlpI, 98.3 5.5E-05 1.2E-09 63.1 16.3 203 33-259 61-265 (297)
262 KOG4555|consensus 98.3 4.1E-05 8.8E-10 58.3 14.1 101 37-144 43-143 (175)
263 COG4105 ComL DNA uptake lipopr 98.3 0.00017 3.6E-09 62.6 19.4 171 36-213 33-226 (254)
264 KOG2047|consensus 98.3 0.00016 3.4E-09 69.9 19.9 216 35-258 385-613 (835)
265 KOG0521|consensus 98.3 9.6E-07 2.1E-11 90.0 5.5 88 384-473 655-742 (785)
266 COG3071 HemY Uncharacterized e 98.3 0.0014 3E-08 60.1 24.8 216 35-263 82-360 (400)
267 KOG3785|consensus 98.2 6.6E-05 1.4E-09 67.2 15.7 211 35-256 55-310 (557)
268 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.8E-05 6E-10 73.4 14.3 121 121-257 174-294 (395)
269 PRK10153 DNA-binding transcrip 98.2 3.4E-05 7.5E-10 76.2 14.9 135 75-221 339-483 (517)
270 KOG0782|consensus 98.2 1.7E-05 3.7E-10 74.6 11.7 102 325-440 888-989 (1004)
271 KOG4234|consensus 98.2 3.5E-05 7.5E-10 63.4 11.6 98 118-220 97-197 (271)
272 PF04733 Coatomer_E: Coatomer 98.2 1.7E-05 3.6E-10 72.4 10.7 153 80-259 107-264 (290)
273 KOG2796|consensus 98.2 0.00021 4.6E-09 61.5 16.2 147 32-184 172-318 (366)
274 KOG3617|consensus 98.2 0.00062 1.3E-08 67.7 21.5 210 55-266 837-1115(1416)
275 KOG2376|consensus 98.2 0.00063 1.4E-08 65.3 20.9 149 41-197 83-269 (652)
276 COG2909 MalT ATP-dependent tra 98.1 0.001 2.3E-08 67.1 23.3 220 35-256 456-684 (894)
277 KOG0522|consensus 98.1 7.2E-06 1.6E-10 76.9 7.7 60 381-440 51-110 (560)
278 PRK15331 chaperone protein Sic 98.1 0.00014 2.9E-09 58.8 13.8 101 112-219 33-133 (165)
279 KOG0511|consensus 98.1 1.3E-05 2.8E-10 71.8 8.7 61 386-446 37-97 (516)
280 KOG4234|consensus 98.1 3.5E-05 7.5E-10 63.4 10.4 101 153-260 96-197 (271)
281 KOG4340|consensus 98.1 0.0002 4.3E-09 62.8 15.5 186 48-259 21-206 (459)
282 KOG2384|consensus 98.1 8.7E-06 1.9E-10 65.9 6.6 83 376-458 3-86 (223)
283 COG1729 Uncharacterized protei 98.1 3.4E-05 7.4E-10 67.4 10.8 100 119-220 144-244 (262)
284 KOG0520|consensus 98.1 4E-06 8.6E-11 85.0 5.7 130 329-474 567-701 (975)
285 PRK15331 chaperone protein Sic 98.1 6E-05 1.3E-09 60.8 11.3 109 26-145 26-134 (165)
286 KOG3609|consensus 98.1 1.9E-05 4.1E-10 78.5 10.2 127 334-479 23-157 (822)
287 KOG3616|consensus 98.1 0.00043 9.2E-09 68.0 19.0 208 39-263 663-914 (1636)
288 KOG3785|consensus 98.1 0.00037 8.1E-09 62.6 17.1 84 49-142 34-117 (557)
289 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 9.4E-05 2E-09 69.9 14.2 114 87-216 180-293 (395)
290 KOG4555|consensus 98.1 0.00016 3.4E-09 55.2 12.3 101 117-220 44-144 (175)
291 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 1.7E-05 3.7E-10 74.4 8.1 69 113-181 72-141 (453)
292 KOG1070|consensus 98.0 0.00082 1.8E-08 70.6 20.7 195 45-261 1466-1664(1710)
293 KOG2047|consensus 98.0 0.0035 7.6E-08 61.0 23.3 204 3-218 387-613 (835)
294 PRK11906 transcriptional regul 98.0 0.00035 7.6E-09 65.9 16.3 164 39-216 257-432 (458)
295 PF04733 Coatomer_E: Coatomer 98.0 0.00012 2.6E-09 66.9 13.2 157 39-217 104-262 (290)
296 PF10345 Cohesin_load: Cohesin 98.0 0.004 8.8E-08 63.7 25.3 214 53-268 37-262 (608)
297 COG1729 Uncharacterized protei 98.0 7.3E-05 1.6E-09 65.3 10.6 100 155-259 144-243 (262)
298 KOG0511|consensus 98.0 1.5E-05 3.2E-10 71.5 6.2 58 419-478 37-94 (516)
299 COG0457 NrfG FOG: TPR repeat [ 98.0 0.0055 1.2E-07 54.0 23.3 198 50-263 36-234 (291)
300 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 3E-05 6.6E-10 72.8 8.0 70 149-220 72-141 (453)
301 KOG4648|consensus 97.9 0.00012 2.5E-09 65.4 10.6 97 119-222 100-196 (536)
302 PF14559 TPR_19: Tetratricopep 97.9 3.5E-05 7.6E-10 53.6 6.1 53 127-181 2-54 (68)
303 PF10602 RPN7: 26S proteasome 97.9 0.0005 1.1E-08 57.8 13.9 123 22-146 21-143 (177)
304 COG4235 Cytochrome c biogenesi 97.9 0.001 2.2E-08 59.1 16.1 119 71-198 152-273 (287)
305 KOG4648|consensus 97.9 4E-05 8.6E-10 68.3 7.2 95 156-261 101-195 (536)
306 KOG2384|consensus 97.9 7.4E-05 1.6E-09 60.7 8.0 67 408-476 2-69 (223)
307 KOG1070|consensus 97.9 0.0083 1.8E-07 63.5 24.4 208 35-266 1498-1706(1710)
308 KOG1464|consensus 97.8 0.0016 3.6E-08 56.4 15.8 207 50-259 40-259 (440)
309 PF13371 TPR_9: Tetratricopept 97.8 7.8E-05 1.7E-09 52.6 6.8 57 159-220 2-58 (73)
310 PF14559 TPR_19: Tetratricopep 97.8 5.5E-05 1.2E-09 52.5 5.8 53 163-220 2-54 (68)
311 PF13512 TPR_18: Tetratricopep 97.8 0.00055 1.2E-08 54.1 11.6 67 118-184 49-131 (142)
312 KOG1915|consensus 97.8 0.012 2.6E-07 55.4 21.6 210 39-262 324-538 (677)
313 PF13371 TPR_9: Tetratricopept 97.8 0.00012 2.6E-09 51.7 7.1 61 122-184 1-61 (73)
314 COG4235 Cytochrome c biogenesi 97.8 0.00062 1.3E-08 60.4 12.8 101 149-259 153-255 (287)
315 PF10300 DUF3808: Protein of u 97.8 0.0034 7.3E-08 61.8 19.1 168 90-266 202-382 (468)
316 PF10345 Cohesin_load: Cohesin 97.7 0.019 4.2E-07 58.9 25.1 221 36-260 360-606 (608)
317 PRK11906 transcriptional regul 97.7 0.0018 3.9E-08 61.3 15.7 150 90-254 272-430 (458)
318 KOG4642|consensus 97.7 0.00044 9.5E-09 58.8 10.5 126 119-252 13-138 (284)
319 PF10602 RPN7: 26S proteasome 97.7 0.0016 3.4E-08 54.8 14.0 124 96-220 16-142 (177)
320 KOG0520|consensus 97.7 2.7E-05 5.8E-10 79.3 3.8 95 382-479 571-667 (975)
321 COG4700 Uncharacterized protei 97.7 0.0099 2.1E-07 48.8 17.6 133 78-222 92-224 (251)
322 KOG1464|consensus 97.7 0.0027 5.8E-08 55.2 15.2 188 37-228 65-268 (440)
323 PF13512 TPR_18: Tetratricopep 97.7 0.0016 3.5E-08 51.4 12.7 88 116-204 10-98 (142)
324 PF12968 DUF3856: Domain of Un 97.6 0.0062 1.3E-07 45.8 14.2 117 150-267 5-136 (144)
325 PF12862 Apc5: Anaphase-promot 97.6 0.00097 2.1E-08 49.6 10.3 80 162-242 8-92 (94)
326 PF12968 DUF3856: Domain of Un 97.6 0.005 1.1E-07 46.3 13.2 109 74-182 6-130 (144)
327 PF04184 ST7: ST7 protein; In 97.6 0.003 6.6E-08 59.9 14.9 126 46-178 177-321 (539)
328 KOG0521|consensus 97.5 8.8E-05 1.9E-09 76.0 4.8 90 332-437 652-741 (785)
329 KOG0551|consensus 97.5 0.0039 8.4E-08 55.9 13.9 109 108-221 73-183 (390)
330 KOG1839|consensus 97.5 0.0027 5.9E-08 66.9 15.1 184 37-223 932-1131(1236)
331 COG2909 MalT ATP-dependent tra 97.5 0.027 5.9E-07 57.3 21.3 221 40-263 418-650 (894)
332 PF10300 DUF3808: Protein of u 97.5 0.021 4.6E-07 56.2 20.6 164 48-223 199-379 (468)
333 KOG1915|consensus 97.5 0.051 1.1E-06 51.3 21.3 129 116-245 471-610 (677)
334 KOG2471|consensus 97.4 0.00066 1.4E-08 63.6 8.6 124 75-203 240-382 (696)
335 KOG3081|consensus 97.4 0.026 5.5E-07 49.3 17.3 144 82-251 115-261 (299)
336 COG4700 Uncharacterized protei 97.4 0.0093 2E-07 49.0 13.6 151 90-258 70-220 (251)
337 PF00515 TPR_1: Tetratricopept 97.4 0.00041 9E-09 40.3 4.5 29 153-181 2-30 (34)
338 PF09986 DUF2225: Uncharacteri 97.4 0.0043 9.4E-08 53.8 12.4 101 46-147 86-196 (214)
339 KOG3081|consensus 97.4 0.016 3.5E-07 50.5 15.4 153 40-217 111-267 (299)
340 PF09986 DUF2225: Uncharacteri 97.4 0.0048 1E-07 53.5 12.5 95 90-184 91-197 (214)
341 COG2976 Uncharacterized protei 97.3 0.039 8.5E-07 45.9 16.9 99 117-221 90-189 (207)
342 KOG0551|consensus 97.3 0.0024 5.2E-08 57.1 10.5 105 149-260 78-182 (390)
343 PF13176 TPR_7: Tetratricopept 97.3 0.0004 8.8E-09 41.0 3.9 27 155-181 2-28 (36)
344 PF00515 TPR_1: Tetratricopept 97.3 0.00047 1E-08 40.1 4.0 33 116-148 1-33 (34)
345 KOG2796|consensus 97.3 0.044 9.6E-07 47.7 17.0 134 77-221 179-316 (366)
346 PF12862 Apc5: Anaphase-promot 97.3 0.0049 1.1E-07 45.8 10.2 79 47-126 8-91 (94)
347 PF07719 TPR_2: Tetratricopept 97.3 0.00073 1.6E-08 39.2 4.6 29 153-181 2-30 (34)
348 PF13176 TPR_7: Tetratricopept 97.2 0.0009 1.9E-08 39.5 4.8 33 192-225 1-33 (36)
349 KOG3616|consensus 97.2 0.037 8E-07 55.0 17.6 112 153-265 662-799 (1636)
350 smart00248 ANK ankyrin repeats 97.2 0.00075 1.6E-08 37.1 4.0 27 453-479 2-28 (30)
351 KOG1839|consensus 97.2 0.012 2.5E-07 62.4 15.0 183 81-266 938-1134(1236)
352 COG2976 Uncharacterized protei 97.2 0.05 1.1E-06 45.3 15.5 100 152-260 89-188 (207)
353 PF07719 TPR_2: Tetratricopept 97.1 0.0013 2.8E-08 38.2 4.5 29 38-66 2-30 (34)
354 PF13181 TPR_8: Tetratricopept 97.1 0.0013 2.9E-08 38.1 4.5 30 153-182 2-31 (34)
355 PF03704 BTAD: Bacterial trans 97.1 0.023 5E-07 46.2 13.4 70 190-266 62-132 (146)
356 KOG1463|consensus 97.1 0.17 3.8E-06 45.8 19.1 220 34-254 45-272 (411)
357 KOG0545|consensus 97.0 0.016 3.5E-07 49.7 12.0 99 117-220 179-293 (329)
358 KOG4642|consensus 97.0 0.0033 7.2E-08 53.6 7.6 99 155-264 13-111 (284)
359 COG5159 RPN6 26S proteasome re 97.0 0.18 4E-06 44.5 18.2 204 33-237 41-252 (421)
360 PF06552 TOM20_plant: Plant sp 97.0 0.011 2.5E-07 48.4 10.1 48 131-180 50-101 (186)
361 PF13428 TPR_14: Tetratricopep 96.9 0.0021 4.5E-08 39.9 4.2 40 154-197 3-42 (44)
362 KOG2610|consensus 96.9 0.074 1.6E-06 48.0 15.1 165 44-218 110-274 (491)
363 COG5159 RPN6 26S proteasome re 96.8 0.16 3.4E-06 45.0 16.6 179 87-266 14-200 (421)
364 PF13181 TPR_8: Tetratricopept 96.8 0.0024 5.1E-08 37.0 4.1 29 38-66 2-30 (34)
365 smart00248 ANK ankyrin repeats 96.8 0.0023 5E-08 35.0 4.0 28 418-445 2-29 (30)
366 PF06552 TOM20_plant: Plant sp 96.8 0.016 3.4E-07 47.6 9.7 86 132-223 7-105 (186)
367 KOG3609|consensus 96.8 0.0037 8.1E-08 62.8 7.1 114 311-447 33-160 (822)
368 PF05843 Suf: Suppressor of fo 96.8 0.091 2E-06 48.0 15.8 136 39-184 3-139 (280)
369 PF13428 TPR_14: Tetratricopep 96.7 0.0037 8E-08 38.8 4.6 42 38-83 2-43 (44)
370 KOG2505|consensus 96.7 0.0022 4.8E-08 60.1 4.9 62 398-461 404-471 (591)
371 PF02259 FAT: FAT domain; Int 96.7 0.56 1.2E-05 44.5 21.7 114 149-263 143-290 (352)
372 KOG2471|consensus 96.7 0.011 2.3E-07 55.9 9.0 120 116-242 240-380 (696)
373 KOG2505|consensus 96.6 0.004 8.6E-08 58.5 6.0 77 349-438 404-480 (591)
374 KOG1550|consensus 96.6 0.17 3.6E-06 51.3 18.1 186 52-262 227-428 (552)
375 COG0790 FOG: TPR repeat, SEL1 96.6 0.28 6.1E-06 45.2 18.5 145 38-204 74-236 (292)
376 PF03704 BTAD: Bacterial trans 96.6 0.19 4.1E-06 40.8 15.3 71 152-227 62-133 (146)
377 PF13374 TPR_10: Tetratricopep 96.6 0.0049 1.1E-07 37.6 4.4 32 152-183 2-33 (42)
378 PF05843 Suf: Suppressor of fo 96.6 0.065 1.4E-06 49.0 13.4 134 118-261 3-137 (280)
379 PF10579 Rapsyn_N: Rapsyn N-te 96.5 0.048 1E-06 37.9 9.1 75 36-112 5-79 (80)
380 PF13431 TPR_17: Tetratricopep 96.5 0.0021 4.6E-08 37.2 2.1 31 175-210 2-32 (34)
381 KOG2053|consensus 96.5 0.37 8.1E-06 49.4 18.6 145 49-211 21-165 (932)
382 KOG2041|consensus 96.4 0.16 3.5E-06 50.4 15.4 31 112-142 792-822 (1189)
383 KOG1463|consensus 96.4 0.5 1.1E-05 43.0 17.1 222 42-266 9-244 (411)
384 PF13431 TPR_17: Tetratricopep 96.4 0.0035 7.6E-08 36.3 2.6 33 59-96 1-33 (34)
385 COG0790 FOG: TPR repeat, SEL1 96.3 0.87 1.9E-05 42.0 20.6 189 41-259 45-265 (292)
386 KOG2581|consensus 96.2 0.4 8.6E-06 44.7 15.9 173 75-248 124-304 (493)
387 KOG0545|consensus 96.2 0.059 1.3E-06 46.4 9.8 108 152-266 178-299 (329)
388 PF13281 DUF4071: Domain of un 96.2 1.2 2.6E-05 42.0 19.8 175 77-260 143-334 (374)
389 PF13374 TPR_10: Tetratricopep 96.1 0.015 3.3E-07 35.4 4.8 38 231-268 2-39 (42)
390 PF08631 SPO22: Meiosis protei 96.1 1.1 2.3E-05 41.0 27.4 224 27-258 25-273 (278)
391 KOG4322|consensus 96.0 1.4 2.9E-05 41.6 18.4 187 72-259 270-467 (482)
392 PF04910 Tcf25: Transcriptiona 96.0 0.99 2.1E-05 42.8 18.2 167 52-220 9-222 (360)
393 KOG1550|consensus 96.0 0.15 3.2E-06 51.6 13.5 148 92-261 228-394 (552)
394 KOG2610|consensus 95.9 1.2 2.5E-05 40.7 17.0 159 86-258 114-274 (491)
395 COG3898 Uncharacterized membra 95.9 1.5 3.3E-05 40.8 20.0 123 121-259 268-391 (531)
396 KOG2581|consensus 95.9 1.6 3.4E-05 40.9 24.2 213 46-261 135-367 (493)
397 PF13174 TPR_6: Tetratricopept 95.7 0.025 5.4E-07 32.2 4.1 28 154-181 2-29 (33)
398 KOG0376|consensus 95.7 0.023 5.1E-07 53.8 6.0 97 43-150 10-106 (476)
399 KOG1308|consensus 95.7 0.0055 1.2E-07 55.2 1.7 92 122-220 120-211 (377)
400 KOG0686|consensus 95.6 0.21 4.5E-06 46.5 11.4 122 96-218 130-256 (466)
401 PF10579 Rapsyn_N: Rapsyn N-te 95.6 0.26 5.7E-06 34.4 9.3 68 157-226 11-78 (80)
402 PF12739 TRAPPC-Trs85: ER-Golg 95.6 0.84 1.8E-05 44.4 16.4 173 39-223 210-402 (414)
403 KOG0686|consensus 95.5 0.24 5.1E-06 46.1 11.3 116 24-143 137-256 (466)
404 PF11207 DUF2989: Protein of u 95.5 0.58 1.2E-05 39.6 12.7 80 129-211 119-198 (203)
405 KOG2041|consensus 95.3 2.3 4.9E-05 42.7 18.0 31 73-104 794-824 (1189)
406 PF11817 Foie-gras_1: Foie gra 95.3 0.36 7.9E-06 43.2 12.1 90 167-257 153-244 (247)
407 PF08631 SPO22: Meiosis protei 95.3 2.3 4.9E-05 38.9 22.1 133 47-182 3-151 (278)
408 PF13174 TPR_6: Tetratricopept 95.0 0.045 9.8E-07 31.1 3.7 28 39-66 2-29 (33)
409 KOG4814|consensus 94.9 4.5 9.8E-05 40.3 23.0 103 114-221 352-458 (872)
410 PF04184 ST7: ST7 protein; In 94.8 1 2.2E-05 43.5 13.7 126 124-258 176-322 (539)
411 KOG0985|consensus 94.8 2.9 6.3E-05 44.0 17.6 191 37-255 1104-1336(1666)
412 KOG4507|consensus 94.7 0.077 1.7E-06 51.5 6.3 97 80-183 611-707 (886)
413 PF11817 Foie-gras_1: Foie gra 94.7 0.38 8.3E-06 43.1 10.5 85 91-175 153-241 (247)
414 KOG0376|consensus 94.5 0.057 1.2E-06 51.3 4.9 93 121-220 9-101 (476)
415 KOG1308|consensus 94.5 0.042 9E-07 49.8 3.7 121 86-216 125-247 (377)
416 PF07079 DUF1347: Protein of u 94.4 4 8.6E-05 39.0 16.2 134 33-177 375-520 (549)
417 PF02259 FAT: FAT domain; Int 94.3 4.8 0.00011 38.1 20.2 124 114-244 144-305 (352)
418 PF13281 DUF4071: Domain of un 94.3 4.9 0.00011 38.0 17.1 173 38-220 142-334 (374)
419 smart00028 TPR Tetratricopepti 94.3 0.082 1.8E-06 29.3 3.7 28 154-181 3-30 (34)
420 KOG4814|consensus 94.3 6.5 0.00014 39.3 21.1 99 39-144 356-456 (872)
421 PF03158 DUF249: Multigene fam 94.2 0.23 4.9E-06 40.9 7.1 111 335-474 75-191 (192)
422 COG4649 Uncharacterized protei 94.2 2.7 5.9E-05 34.6 13.4 100 116-219 94-195 (221)
423 KOG0687|consensus 94.0 3 6.5E-05 38.0 14.1 111 34-148 101-213 (393)
424 smart00028 TPR Tetratricopepti 93.6 0.12 2.6E-06 28.6 3.5 31 117-147 2-32 (34)
425 KOG4014|consensus 93.5 1.8 3.9E-05 35.9 10.9 158 90-266 41-239 (248)
426 KOG2053|consensus 93.5 1.2 2.5E-05 46.0 12.0 87 90-184 23-109 (932)
427 PF00244 14-3-3: 14-3-3 protei 93.3 5.5 0.00012 35.3 18.8 179 40-222 4-200 (236)
428 PF10516 SHNi-TPR: SHNi-TPR; 93.3 0.15 3.3E-06 30.1 3.4 29 154-182 3-31 (38)
429 KOG3783|consensus 93.0 9.7 0.00021 37.4 20.7 79 185-264 444-524 (546)
430 KOG2114|consensus 92.9 5.4 0.00012 41.1 15.4 49 97-145 348-397 (933)
431 PF08626 TRAPPC9-Trs120: Trans 92.9 1.6 3.6E-05 48.6 13.3 186 74-261 241-475 (1185)
432 PF04910 Tcf25: Transcriptiona 92.7 6.4 0.00014 37.4 15.3 145 112-261 36-223 (360)
433 KOG4322|consensus 92.7 9.3 0.0002 36.3 16.3 171 35-208 271-456 (482)
434 PF14853 Fis1_TPR_C: Fis1 C-te 92.6 0.55 1.2E-05 30.3 5.5 29 38-66 2-30 (53)
435 PF14853 Fis1_TPR_C: Fis1 C-te 92.6 0.47 1E-05 30.6 5.2 28 154-181 3-30 (53)
436 PF04781 DUF627: Protein of un 92.6 2 4.4E-05 32.4 9.3 41 43-84 2-42 (111)
437 PF10516 SHNi-TPR: SHNi-TPR; 92.2 0.25 5.3E-06 29.3 3.3 28 39-66 3-30 (38)
438 PF11207 DUF2989: Protein of u 92.1 1.2 2.7E-05 37.7 8.5 55 117-172 142-198 (203)
439 PF04053 Coatomer_WDAD: Coatom 92.0 9.6 0.00021 37.4 15.8 47 125-178 327-373 (443)
440 PF10952 DUF2753: Protein of u 91.6 2.8 6E-05 32.2 9.0 70 193-263 4-82 (140)
441 PF08626 TRAPPC9-Trs120: Trans 91.6 12 0.00025 42.1 17.9 49 34-82 239-289 (1185)
442 KOG4507|consensus 91.6 3.4 7.4E-05 40.7 11.8 103 76-184 213-315 (886)
443 PF06128 Shigella_OspC: Shigel 91.3 2.2 4.7E-05 36.5 9.1 92 385-477 179-278 (284)
444 KOG0985|consensus 91.3 11 0.00025 39.9 15.7 20 43-62 1054-1073(1666)
445 COG3118 Thioredoxin domain-con 91.0 12 0.00026 33.9 16.3 154 87-257 145-299 (304)
446 KOG1538|consensus 90.9 19 0.0004 36.3 16.1 85 41-139 636-726 (1081)
447 PF04781 DUF627: Protein of un 90.8 5.3 0.00011 30.2 9.8 94 122-220 2-107 (111)
448 COG5187 RPN7 26S proteasome re 90.4 13 0.00028 33.5 15.2 108 73-181 113-221 (412)
449 PF07721 TPR_4: Tetratricopept 90.2 0.34 7.4E-06 25.8 2.4 21 155-175 4-24 (26)
450 KOG3807|consensus 90.1 9.8 0.00021 34.8 12.6 60 40-106 187-246 (556)
451 KOG2114|consensus 89.9 20 0.00044 37.2 15.9 43 24-66 354-397 (933)
452 KOG1497|consensus 89.0 18 0.00039 33.1 20.9 106 149-256 100-209 (399)
453 COG3898 Uncharacterized membra 89.0 21 0.00045 33.7 22.1 199 42-257 89-289 (531)
454 KOG4521|consensus 88.9 25 0.00055 38.0 16.1 189 39-256 922-1127(1480)
455 KOG3364|consensus 88.7 4.6 0.0001 31.7 8.3 67 116-182 32-101 (149)
456 COG4649 Uncharacterized protei 88.7 13 0.00027 30.9 14.8 143 90-259 53-195 (221)
457 TIGR03504 FimV_Cterm FimV C-te 88.6 1.5 3.2E-05 27.0 4.6 25 156-180 3-27 (44)
458 KOG4014|consensus 88.5 13 0.00029 30.9 15.4 116 90-223 87-236 (248)
459 COG5187 RPN7 26S proteasome re 88.1 19 0.00042 32.4 18.4 130 90-222 89-223 (412)
460 PF10952 DUF2753: Protein of u 87.7 5.6 0.00012 30.6 8.0 61 79-140 5-74 (140)
461 PF07721 TPR_4: Tetratricopept 87.7 0.6 1.3E-05 24.9 2.2 23 39-61 3-25 (26)
462 PRK10941 hypothetical protein; 87.6 7.3 0.00016 35.2 10.4 78 30-112 174-251 (269)
463 PF08311 Mad3_BUB1_I: Mad3/BUB 87.4 12 0.00027 29.3 10.9 82 92-179 42-126 (126)
464 PF11929 DUF3447: Domain of un 87.3 1.4 3E-05 31.0 4.6 48 337-407 7-54 (76)
465 KOG1914|consensus 87.3 32 0.0007 34.0 19.5 202 38-258 287-499 (656)
466 PF05053 Menin: Menin; InterP 86.7 9.2 0.0002 37.7 10.9 71 168-239 295-366 (618)
467 COG3118 Thioredoxin domain-con 86.6 18 0.00039 32.8 11.9 125 121-259 139-264 (304)
468 PF10255 Paf67: RNA polymerase 86.2 4.8 0.0001 38.5 8.7 65 118-182 124-194 (404)
469 COG3014 Uncharacterized protei 85.9 19 0.00042 33.2 11.8 50 59-110 43-92 (449)
470 PF15015 NYD-SP12_N: Spermatog 85.8 12 0.00025 35.6 10.7 96 123-223 183-294 (569)
471 PF04190 DUF410: Protein of un 85.6 27 0.00059 31.5 21.7 149 32-181 5-170 (260)
472 PF10255 Paf67: RNA polymerase 85.1 5.4 0.00012 38.2 8.5 71 153-225 123-198 (404)
473 cd02680 MIT_calpain7_2 MIT: do 85.0 11 0.00024 26.4 9.8 54 202-265 18-71 (75)
474 PF12309 KBP_C: KIF-1 binding 85.0 37 0.0008 32.5 15.5 38 188-226 298-344 (371)
475 PF00244 14-3-3: 14-3-3 protei 84.9 27 0.00059 30.9 18.3 54 208-261 143-199 (236)
476 PF06128 Shigella_OspC: Shigel 84.6 8.8 0.00019 33.0 8.5 93 339-444 182-280 (284)
477 TIGR03504 FimV_Cterm FimV C-te 84.1 2.5 5.4E-05 26.0 3.9 28 120-147 3-30 (44)
478 COG3947 Response regulator con 83.9 9.1 0.0002 34.5 8.7 73 190-269 279-352 (361)
479 PF07079 DUF1347: Protein of u 83.8 43 0.00094 32.4 20.7 52 159-216 469-520 (549)
480 PF04053 Coatomer_WDAD: Coatom 83.6 31 0.00068 33.9 13.3 77 120-219 299-375 (443)
481 PF12739 TRAPPC-Trs85: ER-Golg 83.6 46 0.00099 32.5 17.8 171 77-262 210-401 (414)
482 KOG0890|consensus 83.3 72 0.0016 37.7 17.1 163 31-202 1664-1858(2382)
483 PRK10941 hypothetical protein; 83.3 8.6 0.00019 34.8 8.7 64 152-220 181-244 (269)
484 cd02682 MIT_AAA_Arch MIT: doma 83.2 13 0.00028 26.0 7.9 33 35-67 4-36 (75)
485 KOG2908|consensus 82.5 41 0.0009 31.1 14.9 150 112-262 16-188 (380)
486 KOG3364|consensus 81.9 9.7 0.00021 30.0 7.2 66 190-259 32-99 (149)
487 PF09670 Cas_Cas02710: CRISPR- 81.3 53 0.0011 31.6 15.4 72 32-105 126-198 (379)
488 KOG2561|consensus 81.2 20 0.00043 34.3 10.2 117 152-269 163-305 (568)
489 KOG2561|consensus 81.1 48 0.001 31.9 12.6 109 35-143 161-294 (568)
490 PF10373 EST1_DNA_bind: Est1 D 81.0 25 0.00054 31.9 11.4 62 95-164 1-62 (278)
491 PHA02537 M terminase endonucle 80.9 24 0.00051 31.0 10.2 102 163-266 94-213 (230)
492 PRK13184 pknD serine/threonine 80.8 6.2 0.00014 42.3 7.9 107 121-228 480-589 (932)
493 KOG4521|consensus 80.8 54 0.0012 35.7 14.1 123 118-248 922-1071(1480)
494 cd02682 MIT_AAA_Arch MIT: doma 80.5 17 0.00037 25.4 8.6 27 195-222 11-37 (75)
495 KOG0890|consensus 80.5 70 0.0015 37.8 15.8 127 92-223 1645-1787(2382)
496 COG5091 SGT1 Suppressor of G2 80.3 6.4 0.00014 34.7 6.4 81 166-247 53-135 (368)
497 KOG0687|consensus 80.1 49 0.0011 30.5 18.8 128 93-223 81-213 (393)
498 PF11929 DUF3447: Domain of un 79.7 4.7 0.0001 28.3 4.7 49 385-440 6-54 (76)
499 KOG1920|consensus 79.7 1E+02 0.0022 33.9 19.1 60 121-180 957-1027(1265)
500 PRK13184 pknD serine/threonine 79.4 39 0.00084 36.6 13.1 104 43-148 481-584 (932)
No 1
>KOG4412|consensus
Probab=99.96 E-value=6.7e-29 Score=194.65 Aligned_cols=155 Identities=32% Similarity=0.432 Sum_probs=140.5
Q ss_pred hHhhhccCCccchhhhccC------------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhc-CCchhhhhhhhcccc
Q psy875 307 DKRTNRKRAPRSHFLIKRN------------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLL-NADLLVHLNLSATLE 373 (480)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~-g~~~~~~~~~~~~~~ 373 (480)
..+.++.|+||||+++..+ +..+|-.+..+.+|+|.|+..|+.++|+-|+.+ |+|+|...+
T Consensus 31 ~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn------ 104 (226)
T KOG4412|consen 31 NARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTN------ 104 (226)
T ss_pred hccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecC------
Confidence 3445557999999886654 444556678889999999999999999999999 999998754
Q ss_pred CCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCC
Q psy875 374 TPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAG 453 (480)
Q Consensus 374 ~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g 453 (480)
.|.||||+|+..|..+++.+|+++|+.++.+|..|.||||.|+.-|.++++++|+..|+.+| ++|+.|
T Consensus 105 ----------~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n--~qDk~G 172 (226)
T KOG4412|consen 105 ----------GGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN--TQDKYG 172 (226)
T ss_pred ----------CCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCC--cccccC
Confidence 39999999999999999999999999999999999999999999999999999999999999 779999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 454 WLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 454 ~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
+||||.|..-|+.++..+|+++||++
T Consensus 173 ~TpL~~al~e~~~d~a~lLV~~gAd~ 198 (226)
T KOG4412|consen 173 FTPLHHALAEGHPDVAVLLVRAGADT 198 (226)
T ss_pred ccHHHHHHhccCchHHHHHHHhccce
Confidence 99999999999999999999999986
No 2
>KOG4412|consensus
Probab=99.93 E-value=2.9e-26 Score=179.90 Aligned_cols=129 Identities=31% Similarity=0.383 Sum_probs=118.4
Q ss_pred CCCchHHHHHHhhCcHHHHHHHHh-cCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCC
Q psy875 334 YNIESITISRNRLGAQEVRKLLSL-LNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ-GHPV 411 (480)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~v~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-g~~~ 411 (480)
-++.++|||||..|+.++|.+|++ .+..++.. |..|+||||+|+..|+.++|+.|+.. |+|+
T Consensus 36 qD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddk----------------DdaGWtPlhia~s~g~~evVk~Ll~r~~adv 99 (226)
T KOG4412|consen 36 QDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDK----------------DDAGWTPLHIAASNGNDEVVKELLNRSGADV 99 (226)
T ss_pred ccCCceeeeeeecCchhHHHHHHhcCCCCCCCc----------------cccCCchhhhhhhcCcHHHHHHHhcCCCCCc
Confidence 378899999999999999999995 44455443 34599999999999999999999999 9999
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 412 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
|..+..|.||||+|+..|..+++++|+++|+.++ +.|..|.||||-|+.-|.++++++|+..|+.+|
T Consensus 100 na~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~--~kD~~~qtplHRAAavGklkvie~Li~~~a~~n 166 (226)
T KOG4412|consen 100 NATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR--IKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN 166 (226)
T ss_pred ceecCCCcceehhhhcCChhhHHHHHHhcCCCCc--ccccccCchhHHHHhccchhhHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999 559999999999999999999999999998775
No 3
>KOG4626|consensus
Probab=99.93 E-value=5.1e-25 Score=204.59 Aligned_cols=228 Identities=18% Similarity=0.267 Sum_probs=120.1
Q ss_pred HHhhccchhhhhhhHHHH-hhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHH
Q psy875 6 ALSRGIGLSDSLDSACTE-LHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL 84 (480)
Q Consensus 6 ~~~~g~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~ 84 (480)
|-++|.+ +..-+..... ....+...+.+....+|++||.+|...+.|+.|+.+|.+|+.+ .+..+.++.++|.+
T Consensus 221 wsnLg~~-f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~i 295 (966)
T KOG4626|consen 221 WSNLGCV-FNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACI 295 (966)
T ss_pred ehhcchH-HhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEE
Confidence 4455555 4333332222 1222333444556667777777777777777777777777766 56666666666666
Q ss_pred HHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh
Q psy875 85 YELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD 164 (480)
Q Consensus 85 y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~ 164 (480)
|+.+ |..+-|+..|++|+++.+ ....+|.|||......|+..+|..+|.+++... +..+.+.+|||.+|.+
T Consensus 296 Yyeq-G~ldlAI~~Ykral~~~P------~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 296 YYEQ-GLLDLAIDTYKRALELQP------NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYRE 366 (966)
T ss_pred Eecc-ccHHHHHHHHHHHHhcCC------CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHH
Confidence 5555 666666666666666532 223445555555555555555555555555333 2333444555555555
Q ss_pred hccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy875 165 NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH 244 (480)
Q Consensus 165 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (480)
+|.+++|..+|+++++. .+..+.++.+||.+|.++|+ +++|+.+|++|+++ .+..++++.++|.+|..+
T Consensus 367 ~~~~e~A~~ly~~al~v----~p~~aaa~nNLa~i~kqqgn-l~~Ai~~YkealrI------~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEV----FPEFAAAHNNLASIYKQQGN-LDDAIMCYKEALRI------KPTFADALSNMGNTYKEM 435 (966)
T ss_pred hccchHHHHHHHHHHhh----ChhhhhhhhhHHHHHHhccc-HHHHHHHHHHHHhc------CchHHHHHHhcchHHHHh
Confidence 55555555555555544 34444445555555555555 55555555555444 333444444444444444
Q ss_pred CChHHHHHHHHHHH
Q psy875 245 DKFTELEQIKTELK 258 (480)
Q Consensus 245 g~~~~A~~~~~~~~ 258 (480)
|+...|.+.+.+++
T Consensus 436 g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAI 449 (966)
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444443
No 4
>KOG4626|consensus
Probab=99.93 E-value=1e-24 Score=202.65 Aligned_cols=234 Identities=17% Similarity=0.233 Sum_probs=205.4
Q ss_pred hhHHHhhccchhhhhhhHHHHh-hhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHH
Q psy875 3 FKIALSRGIGLSDSLDSACTEL-HTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 81 (480)
Q Consensus 3 ~~~~~~~g~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 81 (480)
.+.|+|+|.+ +......-.++ -..+.....+..+.++-++|.+|+.+|+.+.||.+|++|+++ .|....+|+++
T Consensus 252 ~dAYiNLGnV-~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~----~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 252 LDAYINLGNV-YKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL----QPNFPDAYNNL 326 (966)
T ss_pred hHHHhhHHHH-HHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc----CCCchHHHhHH
Confidence 4679999999 55554422221 111223344566889999999999999999999999999999 77777899999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH
Q psy875 82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT 161 (480)
Q Consensus 82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~ 161 (480)
|.. ....|+..+|..+|.+|+.+... .+.+.+|||.+|..+|+++.|...|.+++... +..+.++.|||.+
T Consensus 327 anA-Lkd~G~V~ea~~cYnkaL~l~p~------hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i 397 (966)
T KOG4626|consen 327 ANA-LKDKGSVTEAVDCYNKALRLCPN------HADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASI 397 (966)
T ss_pred HHH-HHhccchHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHH
Confidence 999 77779999999999999998653 36788999999999999999999999999777 5678899999999
Q ss_pred HHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy875 162 YKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLY 241 (480)
Q Consensus 162 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 241 (480)
|.++|++++|+.+|++++++ .|..+.++.++|..|..+|+ ...|+..|.+|+.+ .+..+++..+|+.+|
T Consensus 398 ~kqqgnl~~Ai~~YkealrI----~P~fAda~~NmGnt~ke~g~-v~~A~q~y~rAI~~------nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 398 YKQQGNLDDAIMCYKEALRI----KPTFADALSNMGNTYKEMGD-VSAAIQCYTRAIQI------NPTFAEAHSNLASIY 466 (966)
T ss_pred HHhcccHHHHHHHHHHHHhc----CchHHHHHHhcchHHHHhhh-HHHHHHHHHHHHhc------CcHHHHHHhhHHHHh
Confidence 99999999999999999999 78889999999999999999 99999999999988 788999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHH
Q psy875 242 KKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 242 ~~~g~~~~A~~~~~~~~~l~ 261 (480)
...|+..+|++.|+.+..++
T Consensus 467 kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred hccCCcHHHHHHHHHHHccC
Confidence 99999999999999998765
No 5
>PHA02791 ankyrin-like protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=196.12 Aligned_cols=148 Identities=17% Similarity=0.149 Sum_probs=114.4
Q ss_pred cCCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875 313 KRAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE 381 (480)
Q Consensus 313 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (480)
.|.||||+++..+ +.+++..+..+.++++.|+..|+.+++++|+++|++++....
T Consensus 60 d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~-------------- 125 (284)
T PHA02791 60 ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK-------------- 125 (284)
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCC--------------
Confidence 3567777765543 345556666777777777777777777777777777765432
Q ss_pred CCCC-chHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcH-HH
Q psy875 382 KPRG-ETALHVAAARGNLTLVQSLLKQGHPVKVQD-SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLP-LH 458 (480)
Q Consensus 382 ~~~g-~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tp-l~ 458 (480)
.| .||||+|+..|+.+++++|++++.+. .| ..|.||||+|+..|+.+++++|+++|++++ ..|..|.|| ||
T Consensus 126 --~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n--~~d~~g~t~~L~ 199 (284)
T PHA02791 126 --TGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK 199 (284)
T ss_pred --CCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCC--cccCCCCChHHH
Confidence 25 58899999999999999998886543 23 247899999999999999999999999998 458888876 99
Q ss_pred HHHHcCCHHHHHHHHHcCCCCC
Q psy875 459 EAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 459 ~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+|+..|+.+++++|+++|+++|
T Consensus 200 ~Aa~~~~~e~v~lLl~~Ga~in 221 (284)
T PHA02791 200 LAIDNKDLEMLQALFKYDINIY 221 (284)
T ss_pred HHHHcCCHHHHHHHHHCCCCCc
Confidence 9999999999999999999885
No 6
>PHA02791 ankyrin-like protein; Provisional
Probab=99.91 E-value=8.2e-24 Score=190.42 Aligned_cols=148 Identities=20% Similarity=0.195 Sum_probs=118.5
Q ss_pred hccCCccchhhhcc-----------CCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875 311 NRKRAPRSHFLIKR-----------NDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSL 379 (480)
Q Consensus 311 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~ 379 (480)
+..|.||||+++.. .+.+++.. ++.+|++.|+..|+.++|++|+++|++++..+
T Consensus 27 D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d------------- 91 (284)
T PHA02791 27 DVHGHSALYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGMDDSQFD------------- 91 (284)
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC-------------
Confidence 44577777777543 34445443 35789999999999999999999999887653
Q ss_pred cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-hHHHHHHHcCCHHHHHHHHHcCCCCCCccCC-CCCCcHH
Q psy875 380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGW-LPLHEAANHGHTDIVQALVSAGADPNDKVQD-SAGWLPL 457 (480)
Q Consensus 380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~-t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-~~g~tpl 457 (480)
..|.||||+|+..|+.+++++|+++|++++.++..|+ ||||+|+..|+.+++++|++++++.. | ..|.|||
T Consensus 92 ---~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~----d~~~g~TpL 164 (284)
T PHA02791 92 ---DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF----DLAILLSCI 164 (284)
T ss_pred ---CCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc----ccccCccHH
Confidence 3489999999999999999999999999888887775 89999999999999999998875442 2 2478999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCC
Q psy875 458 HEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 458 ~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
|+|+..|+.+++++|+++|++++
T Consensus 165 h~Aa~~g~~eiv~lLL~~gAd~n 187 (284)
T PHA02791 165 HITIKNGHVDMMILLLDYMTSTN 187 (284)
T ss_pred HHHHHcCCHHHHHHHHHCCCCCC
Confidence 99999999999999999998875
No 7
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.90 E-value=7.4e-23 Score=177.90 Aligned_cols=154 Identities=18% Similarity=0.136 Sum_probs=131.7
Q ss_pred hhccCCccchhhhccCCCc--------CCCCcCCCchHHHHHHhh--CcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875 310 TNRKRAPRSHFLIKRNDKD--------SNLNLYNIESITISRNRL--GAQEVRKLLSLLNADLLVHLNLSATLETPTTSL 379 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~--~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~ 379 (480)
...++.||||.++..+..+ ++..+..+.+|++.|+.. ++.+++++|+++|++++....
T Consensus 17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~------------ 84 (209)
T PHA02859 17 LFYRYCNPLFYYVEKDDIEGVKKWIKFVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTR------------ 84 (209)
T ss_pred HhhccCcHHHHHHHhCcHHHHHHHHHhhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCC------------
Confidence 3556788898888877752 455667788999999875 489999999999999987632
Q ss_pred cCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCChHHHHHHH--cCCHHHHHHHHHcCCCCCCccCCCCCC
Q psy875 380 LEKPRGETALHVAAAR---GNLTLVQSLLKQGHPVKVQDSAGWLPLHEAAN--HGHTDIVQALVSAGADPNDKVQDSAGW 454 (480)
Q Consensus 380 ~~~~~g~~~l~~a~~~---~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~g~~~~~~~~~~~g~ 454 (480)
..|.||||+|+.. ++.+++++|+++|+++|.+|..|.||||+|+. .++.+++++|+++|++++ ..|..|.
T Consensus 85 ---~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin--~~d~~g~ 159 (209)
T PHA02859 85 ---DNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL--NKDFDNN 159 (209)
T ss_pred ---CCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--cccCCCC
Confidence 2399999998864 47999999999999999999999999999876 468999999999999999 5699999
Q ss_pred cHHHH-HHHcCCHHHHHHHHHcCCCCC
Q psy875 455 LPLHE-AANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 455 tpl~~-A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
||||. |+..++.+++++|+++|++++
T Consensus 160 t~Lh~~a~~~~~~~iv~~Ll~~Gadi~ 186 (209)
T PHA02859 160 NILYSYILFHSDKKIFDFLTSLGIDIN 186 (209)
T ss_pred cHHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence 99996 566789999999999999885
No 8
>KOG1840|consensus
Probab=99.90 E-value=4.6e-21 Score=182.77 Aligned_cols=241 Identities=20% Similarity=0.293 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ 108 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~ 108 (480)
...++.....+|.+|..+++|.+|+..|++|+.+. +.+++..+.++.+||.+|+.. |+|++|..++++|+++.++
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ-GKFAEAEEYCERALEIYEK 315 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHH
Confidence 45667777789999999999999999999999997 678899999999999997666 9999999999999999877
Q ss_pred C--CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875 109 N--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELR 180 (480)
Q Consensus 109 ~--~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~ 180 (480)
. ..++.++..+.+++.++..++++++|+.++++++.+... +.++.++.+||.+|..+|+|++|.++|++|+.
T Consensus 316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3 355788889999999999999999999999988865442 36788999999999999999999999999999
Q ss_pred hhhc----CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy875 181 LHAR----NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK-DDKLIRTVMRSMKKLYKKHDKFTELEQIKT 255 (480)
Q Consensus 181 ~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 255 (480)
+... ........+.++|..|.+.++ +.+|...|.++..+.+..+ +.+.....|.+|+.+|..+|+++.|.++..
T Consensus 396 ~~~~~~~~~~~~~~~~l~~la~~~~~~k~-~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 396 ILRELLGKKDYGVGKPLNQLAEAYEELKK-YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHHhcccCcChhhhHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 8644 467778899999999999999 9999999999999986655 667899999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCcccc
Q psy875 256 ELKSLEEKLDLNSSSDEEDT 275 (480)
Q Consensus 256 ~~~~l~~~~~~~~~~~~~~~ 275 (480)
.+....+..+.......+++
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~ 494 (508)
T KOG1840|consen 475 KVLNAREQRLGTASPTVEDE 494 (508)
T ss_pred HHHHHHHHcCCCCCcchhHH
Confidence 99998888777555554444
No 9
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.89 E-value=1.9e-22 Score=196.23 Aligned_cols=151 Identities=22% Similarity=0.250 Sum_probs=103.4
Q ss_pred cCCccchhhhccCCC-----------cCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875 313 KRAPRSHFLIKRNDK-----------DSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE 381 (480)
Q Consensus 313 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (480)
.|.||||+|+..+.. +++.....+.++++.|+..|+.++|+.|++.|++++.. .
T Consensus 34 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~---------------~ 98 (413)
T PHA02875 34 DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDV---------------F 98 (413)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCccccc---------------c
Confidence 466777766554333 33344455667777777777777777777777654321 1
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~ 461 (480)
+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+
T Consensus 99 ~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~TpL~~A~ 176 (413)
T PHA02875 99 YKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD--IEDCCGCTPLIIAM 176 (413)
T ss_pred cCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCHHHHHH
Confidence 2347777777777777777777777777777777777777777777777777777777777777 44777777777777
Q ss_pred HcCCHHHHHHHHHcCCCCC
Q psy875 462 NHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 462 ~~~~~~~~~~Ll~~ga~~~ 480 (480)
..|+.+++++|+++|++++
T Consensus 177 ~~g~~eiv~~Ll~~ga~~n 195 (413)
T PHA02875 177 AKGDIAICKMLLDSGANID 195 (413)
T ss_pred HcCCHHHHHHHHhCCCCCC
Confidence 7777777777777777664
No 10
>KOG0509|consensus
Probab=99.89 E-value=2.4e-23 Score=195.21 Aligned_cols=154 Identities=30% Similarity=0.304 Sum_probs=123.3
Q ss_pred hhhccCCccchhhhccCCC-----------cCCCCc-CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCC
Q psy875 309 RTNRKRAPRSHFLIKRNDK-----------DSNLNL-YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPT 376 (480)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~ 376 (480)
..++.|-++||.|..++.. ++|..+ .-+.+|+|||+++|+..+|.+|+++||||+..+
T Consensus 73 ~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D---------- 142 (600)
T KOG0509|consen 73 NPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKD---------- 142 (600)
T ss_pred CCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceec----------
Confidence 3455788888888766544 445444 667788889999999999999999998888764
Q ss_pred ccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcH
Q psy875 377 TSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLP 456 (480)
Q Consensus 377 ~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tp 456 (480)
..|.+|||.|+..|+.-+|-+|+.+|++++.+|..|+||||+|+..|+...+..|++.|+.++.. .|..|.||
T Consensus 143 ------~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~-d~~~g~Tp 215 (600)
T KOG0509|consen 143 ------KQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLT-DDNHGNTP 215 (600)
T ss_pred ------CCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccccc-ccccCCch
Confidence 34888999999999888888888888888888888999999988888887788888888888843 33788899
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCC
Q psy875 457 LHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 457 l~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
||+|+..|+..++.+|++.|++.
T Consensus 216 LHwa~~~gN~~~v~Ll~~g~~~~ 238 (600)
T KOG0509|consen 216 LHWAVVGGNLTAVKLLLEGGADL 238 (600)
T ss_pred HHHHHhcCCcceEehhhhcCCcc
Confidence 99999888888888666666653
No 11
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.89 E-value=1.9e-22 Score=196.23 Aligned_cols=150 Identities=21% Similarity=0.249 Sum_probs=132.0
Q ss_pred cCCccchhhhccCCCcC------------CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcccc
Q psy875 313 KRAPRSHFLIKRNDKDS------------NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLL 380 (480)
Q Consensus 313 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 380 (480)
.+.||+|+++..+..+. +.....+.+|+++|+..|+.+++++|+++|++++...
T Consensus 67 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~-------------- 132 (413)
T PHA02875 67 DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPN-------------- 132 (413)
T ss_pred CcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCC--------------
Confidence 35677777776655432 3344567899999999999999999999999998754
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCC-CcHHHH
Q psy875 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAG-WLPLHE 459 (480)
Q Consensus 381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g-~tpl~~ 459 (480)
..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..| .||+|+
T Consensus 133 --~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~--~~~~~~~t~l~~ 208 (413)
T PHA02875 133 --TDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDY--FGKNGCVAALCY 208 (413)
T ss_pred --CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCc--CCCCCCchHHHH
Confidence 3499999999999999999999999999999999999999999999999999999999999994 46655 589999
Q ss_pred HHHcCCHHHHHHHHHcCCCCC
Q psy875 460 AANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 460 A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
|+..|+.+++++|+++|+|+|
T Consensus 209 A~~~~~~~iv~~Ll~~gad~n 229 (413)
T PHA02875 209 AIENNKIDIVRLFIKRGADCN 229 (413)
T ss_pred HHHcCCHHHHHHHHHCCcCcc
Confidence 999999999999999999985
No 12
>KOG0508|consensus
Probab=99.89 E-value=5e-23 Score=185.19 Aligned_cols=128 Identities=31% Similarity=0.383 Sum_probs=109.2
Q ss_pred CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875 334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV 413 (480)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~ 413 (480)
..+.+++++|+..||+++||+|+.+|+++|..... ..|||..||..|++++|++|+++|+|++.
T Consensus 82 IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~T----------------NStPLraACfDG~leivKyLvE~gad~~I 145 (615)
T KOG0508|consen 82 IEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRT----------------NSTPLRAACFDGHLEIVKYLVEHGADPEI 145 (615)
T ss_pred cCCCchhhHHhccCcHHHHHHHHHhcCcccccccc----------------CCccHHHHHhcchhHHHHHHHHcCCCCcc
Confidence 45668888888999999999999999888875432 45889999999999999999999999988
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
.|..|.|.||+||..|+.+++++|++.|+|+| ..+..|+|+||.|+..|+.+++++|+.+|+.+
T Consensus 146 anrhGhTcLmIa~ykGh~~I~qyLle~gADvn--~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i 209 (615)
T KOG0508|consen 146 ANRHGHTCLMIACYKGHVDIAQYLLEQGADVN--AKSYKGNTALHDCAESGSVDIVQLLLKHGAKI 209 (615)
T ss_pred cccCCCeeEEeeeccCchHHHHHHHHhCCCcc--hhcccCchHHHhhhhcccHHHHHHHHhCCcee
Confidence 88889999999999999999999999999998 45888999999999999999999999888754
No 13
>KOG0509|consensus
Probab=99.88 E-value=2.9e-22 Score=188.00 Aligned_cols=155 Identities=28% Similarity=0.343 Sum_probs=137.4
Q ss_pred HhhhccCC-ccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCc
Q psy875 308 KRTNRKRA-PRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGE 386 (480)
Q Consensus 308 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 386 (480)
......|+ ..++.++...+.+++..+..+-+++|||+.+++.+++++|+++|+++|..... -+.
T Consensus 49 v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~---------------l~s 113 (600)
T KOG0509|consen 49 VKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGV---------------LGS 113 (600)
T ss_pred hhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCC---------------CCC
Confidence 34445555 23444455548888888889999999999999999999999999999986421 188
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCH
Q psy875 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT 466 (480)
Q Consensus 387 ~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~ 466 (480)
||||||+++|+..+|.+|+++|+|++.+|..|.+|||.|+..|+..+|-+|+.+|++++ ++|.+|+||||+|+..|+.
T Consensus 114 tPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d--~~D~~grTpLmwAaykg~~ 191 (600)
T KOG0509|consen 114 TPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID--LRDNNGRTPLMWAAYKGFA 191 (600)
T ss_pred CcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC--CcCCCCCCHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999 7799999999999999998
Q ss_pred HHHHHHHHcCCCC
Q psy875 467 DIVQALVSAGAEV 479 (480)
Q Consensus 467 ~~~~~Ll~~ga~~ 479 (480)
..+..|+..|+.+
T Consensus 192 ~~v~~LL~f~a~~ 204 (600)
T KOG0509|consen 192 LFVRRLLKFGASL 204 (600)
T ss_pred HHHHHHHHhcccc
Confidence 8899999999876
No 14
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.88 E-value=7.7e-22 Score=192.70 Aligned_cols=157 Identities=27% Similarity=0.383 Sum_probs=134.0
Q ss_pred hccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhh-------hccccCCCccccCCCCCchHHHHHHH
Q psy875 322 IKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNL-------SATLETPTTSLLEKPRGETALHVAAA 394 (480)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~l~~a~~ 394 (480)
+...+.+++..+..+.++++.|+..|+.+++++|+++|+++...... ...+..+......+..|.||||+|+.
T Consensus 54 Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~ 133 (434)
T PHA02874 54 FIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIK 133 (434)
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHH
Confidence 34455677777778889999999999999999999999987532110 00112333445567789999999999
Q ss_pred cCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875 395 RGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474 (480)
Q Consensus 395 ~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 474 (480)
.|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++
T Consensus 134 ~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n--~~~~~g~tpL~~A~~~g~~~iv~~Ll~ 211 (434)
T PHA02874 134 KGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN--VKDNNGESPLHNAAEYGDYACIKLLID 211 (434)
T ss_pred CCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 569999999999999999999999999
Q ss_pred cCCCCC
Q psy875 475 AGAEVS 480 (480)
Q Consensus 475 ~ga~~~ 480 (480)
+|++++
T Consensus 212 ~g~~i~ 217 (434)
T PHA02874 212 HGNHIM 217 (434)
T ss_pred CCCCCc
Confidence 999864
No 15
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.88 E-value=6.5e-22 Score=196.66 Aligned_cols=150 Identities=28% Similarity=0.358 Sum_probs=136.8
Q ss_pred cCCccchhhhccC-------------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875 313 KRAPRSHFLIKRN-------------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSL 379 (480)
Q Consensus 313 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~ 379 (480)
.|.||+|+++..+ +.+++..+..+.+|++.|+..|+.+++++|+++|++++....
T Consensus 140 ~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~------------ 207 (480)
T PHA03100 140 DGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDI------------ 207 (480)
T ss_pred CCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCC------------
Confidence 4777888777766 566777777899999999999999999999999999986543
Q ss_pred cCCCCC------chHHHHHHHcCC--HHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCC
Q psy875 380 LEKPRG------ETALHVAAARGN--LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451 (480)
Q Consensus 380 ~~~~~g------~~~l~~a~~~~~--~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~ 451 (480)
.| .||||.|+..|+ .+++++|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++ .+|.
T Consensus 208 ----~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n--~~d~ 281 (480)
T PHA03100 208 ----ETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPN--LVNK 281 (480)
T ss_pred ----CCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCC
Confidence 25 899999999999 999999999999999999999999999999999999999999999999 6699
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 452 AGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 452 ~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
.|.||+|+|+..++.+++++|+++|++++
T Consensus 282 ~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~ 310 (480)
T PHA03100 282 YGDTPLHIAILNNNKEIFKLLLNNGPSIK 310 (480)
T ss_pred CCCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence 99999999999999999999999999874
No 16
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.88 E-value=6.3e-22 Score=197.51 Aligned_cols=152 Identities=25% Similarity=0.269 Sum_probs=129.8
Q ss_pred hccCCccchhhh-------------ccCCCcCCCCcCCCchHHHHHHhhCc--HHHHHHHHhcCCchhhhhhhhccccCC
Q psy875 311 NRKRAPRSHFLI-------------KRNDKDSNLNLYNIESITISRNRLGA--QEVRKLLSLLNADLLVHLNLSATLETP 375 (480)
Q Consensus 311 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~v~~L~~~g~~~~~~~~~~~~~~~~ 375 (480)
+..|.||||.++ ...+.++|..+..+.||||.|+..|+ .++|++|+++|+|++..+.
T Consensus 174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~-------- 245 (764)
T PHA02716 174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCV-------- 245 (764)
T ss_pred CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCC--------
Confidence 345778888753 23678899999999999999999995 5999999999999997643
Q ss_pred CccccCCCCCchHHHHH-------------------------------------HHcCCHHHHHHHHhcCCCCCCCCCCC
Q psy875 376 TTSLLEKPRGETALHVA-------------------------------------AARGNLTLVQSLLKQGHPVKVQDSAG 418 (480)
Q Consensus 376 ~~~~~~~~~g~~~l~~a-------------------------------------~~~~~~~~~~~ll~~g~~~~~~~~~g 418 (480)
.|.||||+| +..|+.++++.|++.|++++.+|..|
T Consensus 246 --------~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G 317 (764)
T PHA02716 246 --------NGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAG 317 (764)
T ss_pred --------CCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCC
Confidence 377777754 45678899999999999999999999
Q ss_pred ChHHHHHHH--cCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHH--------------cCCHHHHHHHHHcCCCCC
Q psy875 419 WLPLHEAAN--HGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAAN--------------HGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 419 ~t~l~~a~~--~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~--------------~~~~~~~~~Ll~~ga~~~ 480 (480)
+||||+|+. .++.+++++|+++|++++ .+|..|+||||+|+. .++.+++++|+++|++++
T Consensus 318 ~TPLH~Aaa~~~~~~eIVklLLe~GADIN--~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn 393 (764)
T PHA02716 318 RTCLHQYILRHNISTDIIKLLHEYGNDLN--EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADIT 393 (764)
T ss_pred CCHHHHHHHHhCCCchHHHHHHHcCCCCc--cCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCC
Confidence 999999764 468899999999999999 569999999999865 368999999999999985
No 17
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.87 E-value=1.1e-21 Score=164.11 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=119.0
Q ss_pred CCCcCCCCcCCCchHHHHHHhhCcH----HHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHH-
Q psy875 325 NDKDSNLNLYNIESITISRNRLGAQ----EVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLT- 399 (480)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~a~~~~~~----~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~- 399 (480)
++.+++.......+.++.|++.|+. +++++|++.|++++..+ ..|.||||+|+..|+.+
T Consensus 9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d----------------~~g~t~Lh~Aa~~g~~~~ 72 (166)
T PHA02743 9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYD----------------HHGRQCTHMVAWYDRANA 72 (166)
T ss_pred cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccC----------------CCCCcHHHHHHHhCccCH
Confidence 3445555566677788889999988 66778888998877543 34999999999998765
Q ss_pred --HHHHHHhcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy875 400 --LVQSLLKQGHPVKVQD-SAGWLPLHEAANHGHTDIVQALVS-AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475 (480)
Q Consensus 400 --~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 475 (480)
++++|+..|+++|.++ ..|.||||+|+..++.+++++|+. .|++++ .++..|.||||+|+..++.+++++|+++
T Consensus 73 ~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ 150 (166)
T PHA02743 73 VMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG--AINYQHETAYHIAYKMRDRRMMEILRAN 150 (166)
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc--CcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 4899999999999998 589999999999999999999995 799999 5699999999999999999999999999
Q ss_pred CCCCC
Q psy875 476 GAEVS 480 (480)
Q Consensus 476 ga~~~ 480 (480)
|++++
T Consensus 151 ga~~~ 155 (166)
T PHA02743 151 GAVCD 155 (166)
T ss_pred CCCCC
Confidence 99875
No 18
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.87 E-value=1.1e-21 Score=193.78 Aligned_cols=102 Identities=31% Similarity=0.474 Sum_probs=93.2
Q ss_pred ccccCCCC-CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCc
Q psy875 377 TSLLEKPR-GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWL 455 (480)
Q Consensus 377 ~~~~~~~~-g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t 455 (480)
..+..+.. |.||||+|+..|+.+++++|++.|++++.+|..|+||||.|+..|+.+++++|++.|++++ .+|..|.|
T Consensus 159 din~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in--~~d~~g~T 236 (477)
T PHA02878 159 DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD--ARDKCGNT 236 (477)
T ss_pred CCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--CCCCCCCC
Confidence 34445566 9999999999999999999999999999999999999999999999999999999999999 56999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHcCCCCC
Q psy875 456 PLHEAANH-GHTDIVQALVSAGAEVS 480 (480)
Q Consensus 456 pl~~A~~~-~~~~~~~~Ll~~ga~~~ 480 (480)
|||+|+.. ++.+++++|+++|++++
T Consensus 237 pLh~A~~~~~~~~iv~~Ll~~gadvn 262 (477)
T PHA02878 237 PLHISVGYCKDYDILKLLLEHGVDVN 262 (477)
T ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence 99999975 78999999999999975
No 19
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.87 E-value=1.2e-21 Score=194.76 Aligned_cols=150 Identities=27% Similarity=0.348 Sum_probs=137.3
Q ss_pred cCCccchhhh--c-----------cCCCcCCCCcCCCchHHHHHHhhC--cHHHHHHHHhcCCchhhhhhhhccccCCCc
Q psy875 313 KRAPRSHFLI--K-----------RNDKDSNLNLYNIESITISRNRLG--AQEVRKLLSLLNADLLVHLNLSATLETPTT 377 (480)
Q Consensus 313 ~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~a~~~~--~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~ 377 (480)
.|.||+|+|+ . ..+.+++..+..+.++++.|+..| +.+++++|+++|++++..+.
T Consensus 105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~---------- 174 (480)
T PHA03100 105 NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR---------- 174 (480)
T ss_pred CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccC----------
Confidence 4777888877 3 456677788889999999999999 99999999999999987643
Q ss_pred cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC------ChHHHHHHHcCC--HHHHHHHHHcCCCCCCccC
Q psy875 378 SLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAG------WLPLHEAANHGH--TDIVQALVSAGADPNDKVQ 449 (480)
Q Consensus 378 ~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g------~t~l~~a~~~~~--~~~~~~Ll~~g~~~~~~~~ 449 (480)
.|.||||+|+..|+.+++++|+++|++++..+..| .||||.|+..|+ .+++++|+++|++++ .+
T Consensus 175 ------~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din--~~ 246 (480)
T PHA03100 175 ------YGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPIN--IK 246 (480)
T ss_pred ------CCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCC--CC
Confidence 49999999999999999999999999999999888 899999999999 999999999999999 56
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 450 DSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 450 ~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
|..|.||||+|+..|+.+++++|+++|++++
T Consensus 247 d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n 277 (480)
T PHA03100 247 DVYGFTPLHYAVYNNNPEFVKYLLDLGANPN 277 (480)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999875
No 20
>PHA02795 ankyrin-like protein; Provisional
Probab=99.87 E-value=2e-21 Score=181.39 Aligned_cols=145 Identities=17% Similarity=0.076 Sum_probs=122.4
Q ss_pred hccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHH
Q psy875 322 IKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLV 401 (480)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~ 401 (480)
+...|++++.. .+.++++.|+..|+.+++++|+++|++..-... ....+..+.+|+|.++..++.+++
T Consensus 137 LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~----------~~l~~~~~~t~l~~a~~~~~~eIv 204 (437)
T PHA02795 137 MVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVK----------LDLYKIIQYTRGFLVDEPTVLEIY 204 (437)
T ss_pred HHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCccccccc----------chhhhhhccchhHHHHhcCHHHHH
Confidence 33455566553 447899999999999999999999985432110 011112378999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC--------CHHHHHHHH
Q psy875 402 QSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG--------HTDIVQALV 473 (480)
Q Consensus 402 ~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~--------~~~~~~~Ll 473 (480)
++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..| +.+++++|+
T Consensus 205 e~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN--~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL 282 (437)
T PHA02795 205 KLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN--AVMSNGYTCLDVAVDRGSVIARRETHLKILEILL 282 (437)
T ss_pred HHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHcCCcccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 56999999999999988 469999999
Q ss_pred HcCCCCC
Q psy875 474 SAGAEVS 480 (480)
Q Consensus 474 ~~ga~~~ 480 (480)
++|++++
T Consensus 283 ~~gadI~ 289 (437)
T PHA02795 283 REPLSID 289 (437)
T ss_pred hCCCCCC
Confidence 9999875
No 21
>KOG1840|consensus
Probab=99.87 E-value=1.4e-19 Score=172.68 Aligned_cols=239 Identities=18% Similarity=0.198 Sum_probs=206.6
Q ss_pred hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q psy875 30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDL 105 (480)
Q Consensus 30 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~ 105 (480)
.+..+....+...+|..|..+|+|++|+..++.|++.. ....+..+.....+|.+ +...++|.+|+..|++|+.+
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~-y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALV-YRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHH-HHHhccHHHHHHHHHHHHHH
Confidence 34445566777779999999999999999999999985 44566667777779999 55559999999999999987
Q ss_pred hhc--CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy875 106 ARQ--NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNK 177 (480)
Q Consensus 106 ~~~--~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~ 177 (480)
... ..+++..+.++.+||.+|...|+|++|..++++++.+... +.++..+.+++.++..++++++|+.++++
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 764 4567889999999999999999999999999988876544 56788899999999999999999999999
Q ss_pred HHhhhhc----CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHcCChHHHH
Q psy875 178 ELRLHAR----NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD--DKLIRTVMRSMKKLYKKHDKFTELE 251 (480)
Q Consensus 178 al~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (480)
++++... +++..+.++.+||.+|+.+|+ |++|.++|++|+.+.++... .......+..|+..|.+.+++.+|.
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 9999664 566889999999999999999 99999999999999988765 6777889999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCC
Q psy875 252 QIKTELKSLEEKLDLNSSSD 271 (480)
Q Consensus 252 ~~~~~~~~l~~~~~~~~~~~ 271 (480)
+.+.++..+. .....+.++
T Consensus 430 ~l~~~~~~i~-~~~g~~~~~ 448 (508)
T KOG1840|consen 430 QLFEEAKDIM-KLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHH-HHhCCCCCc
Confidence 9999999999 555544333
No 22
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.86 E-value=6.7e-21 Score=188.33 Aligned_cols=139 Identities=22% Similarity=0.281 Sum_probs=93.8
Q ss_pred hccCCCcCCCCcCC-CchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHH
Q psy875 322 IKRNDKDSNLNLYN-IESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTL 400 (480)
Q Consensus 322 ~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~ 400 (480)
+...+.+++..+.. +.+|+|.|+..|+.+++++|++.|++++..+ ..|.||||.|+..|+.++
T Consensus 153 Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d----------------~~g~tpLh~A~~~~~~~i 216 (477)
T PHA02878 153 LLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPD----------------KTNNSPLHHAVKHYNKPI 216 (477)
T ss_pred HHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcC----------------CCCCCHHHHHHHhCCHHH
Confidence 33445566655555 6777777777777777777777777766543 236777777777777777
Q ss_pred HHHHHhcCCCCCCCCCCCChHHHHHHHc-CCHHHHHHHHHcCCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875 401 VQSLLKQGHPVKVQDSAGWLPLHEAANH-GHTDIVQALVSAGADPNDKVQDS-AGWLPLHEAANHGHTDIVQALVSAGAE 478 (480)
Q Consensus 401 ~~~ll~~g~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 478 (480)
++.|++.|++++.+|..|.||||+|+.. ++.+++++|+++|++++. .+. .|.||||+| .++.+++++|+++|+|
T Consensus 217 v~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~--~~~~~g~TpLh~A--~~~~~~v~~Ll~~gad 292 (477)
T PHA02878 217 VHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA--KSYILGLTALHSS--IKSERKLKLLLEYGAD 292 (477)
T ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCc--cCCCCCCCHHHHH--ccCHHHHHHHHHCCCC
Confidence 7777777777777777777777777754 567777777777777773 343 577777777 3566777777777776
Q ss_pred CC
Q psy875 479 VS 480 (480)
Q Consensus 479 ~~ 480 (480)
+|
T Consensus 293 in 294 (477)
T PHA02878 293 IN 294 (477)
T ss_pred CC
Confidence 64
No 23
>PHA02798 ankyrin-like protein; Provisional
Probab=99.86 E-value=5.9e-21 Score=189.00 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=126.9
Q ss_pred ccCCccchhhhcc--------------CCCcCCCCcCCCchHHHHHHhhCc---HHHHHHHHhcCCchhhhhhhhccccC
Q psy875 312 RKRAPRSHFLIKR--------------NDKDSNLNLYNIESITISRNRLGA---QEVRKLLSLLNADLLVHLNLSATLET 374 (480)
Q Consensus 312 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~a~~~~~---~~~v~~L~~~g~~~~~~~~~~~~~~~ 374 (480)
..|.||||+++.. .|++++..+..+.+|++.|+..|+ .+++++|+++|++++...+.
T Consensus 107 ~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~------ 180 (489)
T PHA02798 107 SDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNK------ 180 (489)
T ss_pred CCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCc------
Confidence 3588899888764 467888889999999999999988 99999999999999876421
Q ss_pred CCccccCCCCCchHHHHHHHc----CCHHHHHHHHhcCC---------------------------------------CC
Q psy875 375 PTTSLLEKPRGETALHVAAAR----GNLTLVQSLLKQGH---------------------------------------PV 411 (480)
Q Consensus 375 ~~~~~~~~~~g~~~l~~a~~~----~~~~~~~~ll~~g~---------------------------------------~~ 411 (480)
.|.||||.++.. ++.+++++|+++|+ ++
T Consensus 181 ---------~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dv 251 (489)
T PHA02798 181 ---------EKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDI 251 (489)
T ss_pred ---------CCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCC
Confidence 266677766543 25566666665554 55
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 412 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
|.+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.||||.|+..++.++++.|+++|++++
T Consensus 252 N~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin--~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~ 318 (489)
T PHA02798 252 NQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDIN--IITELGNTCLFTAFENESKFIFNSILNKKPNKN 318 (489)
T ss_pred CCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccc--ccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence 6677789999999999999999999999999999 669999999999999999999999999998863
No 24
>KOG0508|consensus
Probab=99.85 E-value=1.2e-21 Score=176.37 Aligned_cols=144 Identities=32% Similarity=0.354 Sum_probs=129.7
Q ss_pred ccCCccchhhh-----------ccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcccc
Q psy875 312 RKRAPRSHFLI-----------KRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLL 380 (480)
Q Consensus 312 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 380 (480)
..|.+||+.+. .+.++++|.......+||-.||.-|+.++||+|+++|+|+++.+.
T Consensus 82 IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~Ianr------------- 148 (615)
T KOG0508|consen 82 IEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANR------------- 148 (615)
T ss_pred cCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCccccc-------------
Confidence 45667776553 334477888888888999999999999999999999999998654
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460 (480)
Q Consensus 381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A 460 (480)
.|.|+||+||..|+.+++++|++.|+|+|.++..|.|+||.|+..|+.+++++|+++|+.+. .|..|.|||..|
T Consensus 149 ---hGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~---~d~~GmtPL~~A 222 (615)
T KOG0508|consen 149 ---HGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID---VDGHGMTPLLLA 222 (615)
T ss_pred ---CCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee---ecCCCCchHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999887 367799999999
Q ss_pred HHcCCHHHHHHHHH
Q psy875 461 ANHGHTDIVQALVS 474 (480)
Q Consensus 461 ~~~~~~~~~~~Ll~ 474 (480)
+..|+.+++.+|++
T Consensus 223 a~tG~~~iVe~L~~ 236 (615)
T KOG0508|consen 223 AVTGHTDIVERLLQ 236 (615)
T ss_pred hhhcchHHHHHHhc
Confidence 99999999999986
No 25
>PHA03095 ankyrin-like protein; Provisional
Probab=99.85 E-value=1.2e-20 Score=187.11 Aligned_cols=168 Identities=21% Similarity=0.199 Sum_probs=116.6
Q ss_pred hhccCCccchhhhcc-------------CCCcCCCCcCCCchHHHHHHhhC--cHHHHHHHHhcCCchhhhhhhhcc---
Q psy875 310 TNRKRAPRSHFLIKR-------------NDKDSNLNLYNIESITISRNRLG--AQEVRKLLSLLNADLLVHLNLSAT--- 371 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~a~~~~--~~~~v~~L~~~g~~~~~~~~~~~~--- 371 (480)
.+..|.||||+++.. .+.+++..+..+.+|++.++..+ +.+++++|+++|++++..+..+.+
T Consensus 113 ~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh 192 (471)
T PHA03095 113 KDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLH 192 (471)
T ss_pred CCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence 344567777776622 23455555666677777666544 567777777777776554211110
Q ss_pred ----------------ccCCCccccCCCCCchHHHHHHHcCCH--HHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHH
Q psy875 372 ----------------LETPTTSLLEKPRGETALHVAAARGNL--TLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDI 433 (480)
Q Consensus 372 ----------------~~~~~~~~~~~~~g~~~l~~a~~~~~~--~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~ 433 (480)
+..+......+..|.||||+|+..|+. .++..|++.|+++|.+|..|+||||+|+..|+.++
T Consensus 193 ~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~ 272 (471)
T PHA03095 193 HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRA 272 (471)
T ss_pred HHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 012223344566778888888877764 56777888888888888888888888888888888
Q ss_pred HHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 434 VQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 434 ~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
+++|+++|++++ .+|..|.||||+|+..|+.++++.|++.|+++
T Consensus 273 v~~LL~~gad~n--~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~ 316 (471)
T PHA03095 273 CRRLIALGADIN--AVSSDGNTPLSLMVRNNNGRAVRAALAKNPSA 316 (471)
T ss_pred HHHHHHcCCCCc--ccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence 888888888888 55888888888888888888888888888765
No 26
>KOG1130|consensus
Probab=99.85 E-value=1.9e-20 Score=166.57 Aligned_cols=262 Identities=14% Similarity=0.078 Sum_probs=223.0
Q ss_pred HHHhhccchhhhhhhHHHH-------hhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHH
Q psy875 5 IALSRGIGLSDSLDSACTE-------LHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAV 75 (480)
Q Consensus 5 ~~~~~g~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~ 75 (480)
||-.+|.. |-.+.++..+ +-+++...+....+.+.-+||+++..+|.|++|+.++.+-+.+. .++.....
T Consensus 57 IYsQLGNA-yfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~ 135 (639)
T KOG1130|consen 57 IYSQLGNA-YFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLES 135 (639)
T ss_pred HHHHhcch-hhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhh
Confidence 56666776 5556654443 66677777777778889999999999999999999999999886 56666778
Q ss_pred HHHHHHHHHHHHhh-------------------ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHH
Q psy875 76 KTLGEIGDLYELQE-------------------KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSAC 136 (480)
Q Consensus 76 ~~~~~lg~~y~~~~-------------------~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~ 136 (480)
.+++++|.+|.... ..++.|.++|..-+++....++......+|.+||..|+-+|+|+.|+
T Consensus 136 RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai 215 (639)
T KOG1130|consen 136 RALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAI 215 (639)
T ss_pred HHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHH
Confidence 89999999987652 12677888999999999999999899999999999999999999999
Q ss_pred HHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHH
Q psy875 137 SELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELV 210 (480)
Q Consensus 137 ~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A 210 (480)
.+-+.-+.+... ...-.++.|||++|.-+|+|+.|+++|++++.+... +....+...+.||..|.-.+. +++|
T Consensus 216 ~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e-~~kA 294 (639)
T KOG1130|consen 216 HFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKE-VQKA 294 (639)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHH-HHHH
Confidence 999876655443 223568999999999999999999999998777544 667778889999999999999 9999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccCC
Q psy875 211 VSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNS 268 (480)
Q Consensus 211 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~~~ 268 (480)
+.|+++-+.++++.++.....+++..|+..|..+|..++|+.+.+...++..++....
T Consensus 295 I~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 295 ITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS 352 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999999999988877765543
No 27
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.85 E-value=1.5e-20 Score=183.68 Aligned_cols=150 Identities=24% Similarity=0.306 Sum_probs=131.1
Q ss_pred cCCc-cchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHH
Q psy875 313 KRAP-RSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHV 391 (480)
Q Consensus 313 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 391 (480)
.|+. .+..++..++..++.....+.+|++.|+..|+.++|++|++.|++++.... .|.||||.
T Consensus 11 ~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~----------------~~~t~L~~ 74 (434)
T PHA02874 11 SGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINT----------------KIPHPLLT 74 (434)
T ss_pred cCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------------CCCCHHHH
Confidence 3443 344555666777787888889999999999999999999999999986533 48999999
Q ss_pred HHHcCCHHHHHHHHhcCC-----------------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Q psy875 392 AAARGNLTLVQSLLKQGH-----------------------PVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKV 448 (480)
Q Consensus 392 a~~~~~~~~~~~ll~~g~-----------------------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~ 448 (480)
|+..|+.+++++|+++|+ +++.++..|.||||+|+..|+.+++++|+++|++++ .
T Consensus 75 A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n--~ 152 (434)
T PHA02874 75 AIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN--I 152 (434)
T ss_pred HHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC--C
Confidence 999999999999987764 567788899999999999999999999999999999 5
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 449 QDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 449 ~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 153 ~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n 184 (434)
T PHA02874 153 EDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN 184 (434)
T ss_pred cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC
Confidence 69999999999999999999999999999874
No 28
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.84 E-value=2.3e-20 Score=184.98 Aligned_cols=152 Identities=15% Similarity=0.186 Sum_probs=113.8
Q ss_pred hhccCCccchhhhc--------------cCCCcC-CCCcCCCchHHHHHHh--hCcHHHHHHHHhcCCchhhhhhhhccc
Q psy875 310 TNRKRAPRSHFLIK--------------RNDKDS-NLNLYNIESITISRNR--LGAQEVRKLLSLLNADLLVHLNLSATL 372 (480)
Q Consensus 310 ~~~~~~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~~~a~~--~~~~~~v~~L~~~g~~~~~~~~~~~~~ 372 (480)
.+..|.||||.++. ..|.++ +..+..+.+|+|.|+. .++.++|++|+++|++++...
T Consensus 104 ~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~------ 177 (494)
T PHA02989 104 KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKT------ 177 (494)
T ss_pred CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccc------
Confidence 34457777776543 234555 5666677777777654 357788888888888876521
Q ss_pred cCCCccccCCCCCchHHHHHHHcC----CHHHHHHHHhcCCCCCCCC---------------------------------
Q psy875 373 ETPTTSLLEKPRGETALHVAAARG----NLTLVQSLLKQGHPVKVQD--------------------------------- 415 (480)
Q Consensus 373 ~~~~~~~~~~~~g~~~l~~a~~~~----~~~~~~~ll~~g~~~~~~~--------------------------------- 415 (480)
+..|.||||+|+..+ +.+++++|+++|++++.++
T Consensus 178 ---------~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~ad 248 (494)
T PHA02989 178 ---------SLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIK 248 (494)
T ss_pred ---------cccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCC
Confidence 224889999887754 7889999999998766443
Q ss_pred -----CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875 416 -----SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478 (480)
Q Consensus 416 -----~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 478 (480)
..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.++++.|++.++.
T Consensus 249 vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin--~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~ 314 (494)
T PHA02989 249 INKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIY--NVSKDGDTVLTYAIKHGNIDMLNRILQLKPG 314 (494)
T ss_pred CCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence 448888888888888888888888888888 8888888888888888888888888887764
No 29
>PHA03095 ankyrin-like protein; Provisional
Probab=99.84 E-value=2e-20 Score=185.54 Aligned_cols=119 Identities=16% Similarity=0.112 Sum_probs=99.9
Q ss_pred hccCCccchhhhcc-------------CCCcCCCCcCCCchHHHHHHhhCcH--HHHHHHHhcCCchhhhhhhhccccCC
Q psy875 311 NRKRAPRSHFLIKR-------------NDKDSNLNLYNIESITISRNRLGAQ--EVRKLLSLLNADLLVHLNLSATLETP 375 (480)
Q Consensus 311 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~a~~~~~~--~~v~~L~~~g~~~~~~~~~~~~~~~~ 375 (480)
+..|.||+|+++.. .+.+++..+..+.+|+|.|+..|+. .+++.|++.|++++..+
T Consensus 184 d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d--------- 254 (471)
T PHA03095 184 DDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARN--------- 254 (471)
T ss_pred CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcC---------
Confidence 45577777766543 3455667777788888888887764 57777888888877654
Q ss_pred CccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 376 TTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN 445 (480)
Q Consensus 376 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~ 445 (480)
..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.++++.|++.+++++
T Consensus 255 -------~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~ 317 (471)
T PHA03095 255 -------RYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE 317 (471)
T ss_pred -------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence 359999999999999999999999999999999999999999999999999999999998887
No 30
>PHA02798 ankyrin-like protein; Provisional
Probab=99.84 E-value=3.1e-20 Score=183.90 Aligned_cols=142 Identities=21% Similarity=0.238 Sum_probs=123.5
Q ss_pred ccCCCcCCCCcCCCchHHHHHHhhC---cHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCC--
Q psy875 323 KRNDKDSNLNLYNIESITISRNRLG---AQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGN-- 397 (480)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~-- 397 (480)
...|.++|..+..+.||+|+|+..+ +.+++++|+++|+|++..+ ..|.||||+|+..++
T Consensus 96 l~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d----------------~~g~tpL~~a~~~~~~~ 159 (489)
T PHA02798 96 IENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLD----------------KDGFTMLQVYLQSNHHI 159 (489)
T ss_pred HHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccC----------------CCCCcHHHHHHHcCCcc
Confidence 3467889999999999999999875 7899999999999998764 359999999999987
Q ss_pred -HHHHHHHHhcCCCCCCCC-CCCChHHHHHHHc----CCHHHHHHHHHcCCCCCCc------------------------
Q psy875 398 -LTLVQSLLKQGHPVKVQD-SAGWLPLHEAANH----GHTDIVQALVSAGADPNDK------------------------ 447 (480)
Q Consensus 398 -~~~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~----~~~~~~~~Ll~~g~~~~~~------------------------ 447 (480)
.+++++|+++|++++..+ ..|.||||.++.. ++.+++++|+++|++++..
T Consensus 160 ~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~ 239 (489)
T PHA02798 160 DIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKK 239 (489)
T ss_pred hHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchH
Confidence 999999999999999885 5789999998764 4789999999888765521
Q ss_pred -------------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 448 -------------VQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 448 -------------~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
.+|..|.||||+|+..|+.+++++|+++|||+|
T Consensus 240 ~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin 285 (489)
T PHA02798 240 NILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDIN 285 (489)
T ss_pred HHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence 346789999999999999999999999999986
No 31
>PHA02741 hypothetical protein; Provisional
Probab=99.84 E-value=3e-20 Score=156.24 Aligned_cols=129 Identities=20% Similarity=0.264 Sum_probs=112.4
Q ss_pred CCcCCCchHHHHHHhhCcHHHHHHHHhc------CCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCC----HHH
Q psy875 331 LNLYNIESITISRNRLGAQEVRKLLSLL------NADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGN----LTL 400 (480)
Q Consensus 331 ~~~~~~~~~~~~a~~~~~~~~v~~L~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~----~~~ 400 (480)
..+..+.+++|.|++.|+.++++.|+.. |++++.. |..|.||||+|+..|+ .++
T Consensus 16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~----------------d~~g~T~Lh~A~~~g~~~~~~~i 79 (169)
T PHA02741 16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT----------------DDAGQMCIHIAAEKHEAQLAAEI 79 (169)
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc----------------CCCCCcHHHHHHHcCChHHHHHH
Confidence 4455677888999999999999998643 4555543 4459999999999998 589
Q ss_pred HHHHHhcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy875 401 VQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVS-AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477 (480)
Q Consensus 401 ~~~ll~~g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga 477 (480)
+++|++.|+++|.++. .|+||||+|+..++.+++++|+. .|++++ ..|..|+||||+|+..++.+++++|++.++
T Consensus 80 i~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~--~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~ 156 (169)
T PHA02741 80 IDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH--FCNADNKSPFELAIDNEDVAMMQILREIVA 156 (169)
T ss_pred HHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--cCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999985 89999999999999999999998 599998 569999999999999999999999998765
No 32
>KOG0510|consensus
Probab=99.84 E-value=1e-20 Score=181.43 Aligned_cols=157 Identities=31% Similarity=0.330 Sum_probs=135.5
Q ss_pred hHhhhccCCccchhhhccCCCc--------------------------CCCCcCCCchHHHHHHhhCcHHHHHHHHhcCC
Q psy875 307 DKRTNRKRAPRSHFLIKRNDKD--------------------------SNLNLYNIESITISRNRLGAQEVRKLLSLLNA 360 (480)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~ 360 (480)
....+..|.+|||.++..|... +|-.+.++-+|+|.|++.|+.+.|..|+..|+
T Consensus 218 in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga 297 (929)
T KOG0510|consen 218 INFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGA 297 (929)
T ss_pred cccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCC
Confidence 3344556788888887665431 24457788999999999999999999999999
Q ss_pred chhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHh-cCC-CCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q psy875 361 DLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLK-QGH-PVKVQDSAGWLPLHEAANHGHTDIVQALV 438 (480)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~-~g~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll 438 (480)
+++.++. ++.||||.|+.+|+.++|+.|++ .|. ..|..|-.|+||||.|+..||.+++++|+
T Consensus 298 ~I~~kn~----------------d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl 361 (929)
T KOG0510|consen 298 SINSKNK----------------DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLL 361 (929)
T ss_pred cccccCC----------------CCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHH
Confidence 9998753 59999999999999999999999 554 46888999999999999999999999999
Q ss_pred HcCCCCCC-ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 439 SAGADPND-KVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 439 ~~g~~~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
+.|+.... .-.|++|.||||.|+..|+..+|++|+.+||+|
T Consensus 362 ~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I 403 (929)
T KOG0510|consen 362 NKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI 403 (929)
T ss_pred hcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence 99998873 113899999999999999999999999999997
No 33
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.84 E-value=3e-20 Score=191.75 Aligned_cols=152 Identities=22% Similarity=0.223 Sum_probs=114.9
Q ss_pred hccCCccchhhhccC------------CCcCCCCcCCCchHHHHHHh-hCcHHHHHHHHhcCCchhhhhhhhccccCCCc
Q psy875 311 NRKRAPRSHFLIKRN------------DKDSNLNLYNIESITISRNR-LGAQEVRKLLSLLNADLLVHLNLSATLETPTT 377 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~a~~-~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~ 377 (480)
+..|.||||+++..+ +.+++..+..+.++++.|+. .++.+++++|++.|++++..+
T Consensus 304 d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d----------- 372 (682)
T PHA02876 304 NIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARD----------- 372 (682)
T ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCC-----------
Confidence 445777777777655 34556666667777777766 356777777777777776543
Q ss_pred cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCC-HHHHHHHHHcCCCCCCccCCCCCCcH
Q psy875 378 SLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGH-TDIVQALVSAGADPNDKVQDSAGWLP 456 (480)
Q Consensus 378 ~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~g~~~~~~~~~~~g~tp 456 (480)
..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+. ..++++|+++|++++ .+|..|+||
T Consensus 373 -----~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin--~~d~~G~Tp 445 (682)
T PHA02876 373 -----YCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVN--SKNKDLSTP 445 (682)
T ss_pred -----CCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCC--cCCCCCChH
Confidence 348888888888888888888888888888888888888888876555 466788888888888 558888888
Q ss_pred HHHHHHcC-CHHHHHHHHHcCCCCC
Q psy875 457 LHEAANHG-HTDIVQALVSAGAEVS 480 (480)
Q Consensus 457 l~~A~~~~-~~~~~~~Ll~~ga~~~ 480 (480)
||+|+..| +.+++++|+++|+++|
T Consensus 446 Lh~Aa~~~~~~~iv~lLl~~Gad~n 470 (682)
T PHA02876 446 LHYACKKNCKLDVIEMLLDNGADVN 470 (682)
T ss_pred HHHHHHhCCcHHHHHHHHHCCCCCC
Confidence 88888765 6788888888888875
No 34
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.84 E-value=2.5e-20 Score=186.19 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=123.3
Q ss_pred hhhhccCCCcCCCC-cCCCchHHHHHHh--hCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHc
Q psy875 319 HFLIKRNDKDSNLN-LYNIESITISRNR--LGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAAR 395 (480)
Q Consensus 319 ~~~~~~~~~~~~~~-~~~~~~~~~~a~~--~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~ 395 (480)
.+++..+..++|.. +..+.+++|+|+. .++.+++++|+++|++++..+. .|.||||+|+..
T Consensus 159 k~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~----------------~G~TPLH~Aa~~ 222 (764)
T PHA02716 159 KYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNN----------------HLITPLHTYLIT 222 (764)
T ss_pred HHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCC----------------CCCCHHHHHHHc
Confidence 34444443888887 7888999998764 4678999999999999997643 499999999999
Q ss_pred CC--HHHHHHHHhcCCCCCCCCCCCChHHHHH-------------------------------------HHcCCHHHHHH
Q psy875 396 GN--LTLVQSLLKQGHPVKVQDSAGWLPLHEA-------------------------------------ANHGHTDIVQA 436 (480)
Q Consensus 396 ~~--~~~~~~ll~~g~~~~~~~~~g~t~l~~a-------------------------------------~~~~~~~~~~~ 436 (480)
|+ .++|++|+++|+++|.+|..|+||||+| +..|+.+++++
T Consensus 223 g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVkl 302 (764)
T PHA02716 223 GNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYS 302 (764)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHH
Confidence 95 5899999999999999999999999975 34577899999
Q ss_pred HHHcCCCCCCccCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCC
Q psy875 437 LVSAGADPNDKVQDSAGWLPLHEAAN--HGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 437 Ll~~g~~~~~~~~~~~g~tpl~~A~~--~~~~~~~~~Ll~~ga~~~ 480 (480)
|+++|++++ .+|..|+||||+|+. .++.+++++|+++|++++
T Consensus 303 LLe~GAdIN--~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN 346 (764)
T PHA02716 303 FLQPGVKLH--YKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN 346 (764)
T ss_pred HHhCCCcee--ccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCc
Confidence 999999999 569999999999764 468999999999999985
No 35
>KOG1130|consensus
Probab=99.84 E-value=5.9e-20 Score=163.44 Aligned_cols=235 Identities=17% Similarity=0.232 Sum_probs=207.2
Q ss_pred hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhh
Q psy875 30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLAR 107 (480)
Q Consensus 30 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~ 107 (480)
..+.+.+..+|..||+.|+..++|++|++|-.--+.+. .++....+.+.-++|.+ +..+|.|++|+.+-.+-+.+++
T Consensus 48 TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt-lKv~G~fdeA~~cc~rhLd~ar 126 (639)
T KOG1130|consen 48 TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT-LKVKGAFDEALTCCFRHLDFAR 126 (639)
T ss_pred chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch-hhhhcccchHHHHHHHHhHHHH
Confidence 45677889999999999999999999999987766665 56666778888899999 6666999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHhccccc----ccHHHHHHHHHHHHH
Q psy875 108 QNKDDKLIRTVMRSIKKLYKKHDN--------------------LDSACSELHTVLSSDLC----KDLASCYISLAQTYK 163 (480)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~y~~~~~--------------------~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~ 163 (480)
+.++.-..+.+++|+|.+|...|+ ++.|.++|+.-+..... .....+|-+||+.|+
T Consensus 127 eLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyY 206 (639)
T KOG1130|consen 127 ELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYY 206 (639)
T ss_pred HHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceee
Confidence 999999999999999999999884 67788888866654433 233678999999999
Q ss_pred hhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy875 164 DNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLY 241 (480)
Q Consensus 164 ~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 241 (480)
-+|+|+.|+.+-+.-+++.+. +....-.++.+||.+|.-+|+ ++.|+++|++++.++.+.++....+...+.|+..|
T Consensus 207 lLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~-fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNty 285 (639)
T KOG1130|consen 207 LLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN-FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTY 285 (639)
T ss_pred eeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc-cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHH
Confidence 999999999999998888776 555667889999999999999 99999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHHHhhcc
Q psy875 242 KKHDKFTELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 242 ~~~g~~~~A~~~~~~~~~l~~~~~~ 266 (480)
.-..++++|+.|+.+...+++++..
T Consensus 286 tll~e~~kAI~Yh~rHLaIAqeL~D 310 (639)
T KOG1130|consen 286 TLLKEVQKAITYHQRHLAIAQELED 310 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888877654
No 36
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.84 E-value=4.8e-20 Score=165.74 Aligned_cols=126 Identities=21% Similarity=0.176 Sum_probs=109.4
Q ss_pred cCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy875 333 LYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVK 412 (480)
Q Consensus 333 ~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~ 412 (480)
..+..+++++|+..|+.+++++|+++|+|++.... ..+..|.||||+|+..++.+++++|+++|+++|
T Consensus 30 ~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~------------~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN 97 (300)
T PHA02884 30 KICIANILYSSIKFHYTDIIDAILKLGADPEAPFP------------LSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN 97 (300)
T ss_pred cCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCc------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcC
Confidence 45667899999999999999999999999987531 012349999999999999999999999999999
Q ss_pred CC-CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy875 413 VQ-DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQAL 472 (480)
Q Consensus 413 ~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~L 472 (480)
.. +..|.||||+|+..++.+++++|+.+|++++ ..|..|.||||+|+..++.+++.++
T Consensus 98 ~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin--~kd~~G~TpL~~A~~~~~~~~~~~~ 156 (300)
T PHA02884 98 RYAEEAKITPLYISVLHGCLKCLEILLSYGADIN--IQTNDMVTPIELALMICNNFLAFMI 156 (300)
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHhCChhHHHHh
Confidence 86 4679999999999999999999999999999 5699999999999987665554443
No 37
>PHA02946 ankyin-like protein; Provisional
Probab=99.84 E-value=3.5e-20 Score=179.56 Aligned_cols=150 Identities=18% Similarity=0.168 Sum_probs=108.7
Q ss_pred CcCCCCcCCCchHHHHHHhhC--cHHHHHHHHhcCCchhhh-hhhhc----------------cccCCCccccCCCCCch
Q psy875 327 KDSNLNLYNIESITISRNRLG--AQEVRKLLSLLNADLLVH-LNLSA----------------TLETPTTSLLEKPRGET 387 (480)
Q Consensus 327 ~~~~~~~~~~~~~~~~a~~~~--~~~~v~~L~~~g~~~~~~-~~~~~----------------~~~~~~~~~~~~~~g~~ 387 (480)
.++|..+..+.+|+++|+..+ ..+++++|+++|++++.. +..+. .+..+......+..|.|
T Consensus 96 Adin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t 175 (446)
T PHA02946 96 ADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKN 175 (446)
T ss_pred CCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCC
Confidence 344555555666666655443 356666666666665531 11000 00122223344567999
Q ss_pred HHHHHHHcCC--HHHHHHHHhcCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHc
Q psy875 388 ALHVAAARGN--LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHG--HTDIVQALVSAGADPNDKVQDSAGWLPLHEAANH 463 (480)
Q Consensus 388 ~l~~a~~~~~--~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~ 463 (480)
|||+|+..++ .+++++|++.|++++.+|..|+||||+|+..+ +.+++++|+. |++++ .+|..|.||||+|+..
T Consensus 176 ~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin--~~d~~G~TpLh~A~~~ 252 (446)
T PHA02946 176 HIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVN--KQNKFGDSPLTLLIKT 252 (446)
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCC--CCCCCCCCHHHHHHHh
Confidence 9999987654 68999999999999999999999999999886 7889999885 89999 5699999999999999
Q ss_pred CCH-HHHHHHHHcCCCC
Q psy875 464 GHT-DIVQALVSAGAEV 479 (480)
Q Consensus 464 ~~~-~~~~~Ll~~ga~~ 479 (480)
++. +++++|+++|+++
T Consensus 253 ~~~~~~~~~Ll~~g~~~ 269 (446)
T PHA02946 253 LSPAHLINKLLSTSNVI 269 (446)
T ss_pred CChHHHHHHHHhCCCCC
Confidence 884 8999999999865
No 38
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.83 E-value=6.7e-20 Score=181.74 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=117.5
Q ss_pred hccCCCcCCCCcCCCchHHHHHHhh---CcHHHHHHHHhcCCch-hhhhhhhccccCCCccccCCCCCchHHHHHHHc--
Q psy875 322 IKRNDKDSNLNLYNIESITISRNRL---GAQEVRKLLSLLNADL-LVHLNLSATLETPTTSLLEKPRGETALHVAAAR-- 395 (480)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~a~~~---~~~~~v~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~-- 395 (480)
+...|.++|..+..+.+|++.|+.. |+.++|++|+++|+|+ +..+. .|.||||+|+..
T Consensus 94 Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~----------------~g~tpLh~a~~~~~ 157 (494)
T PHA02989 94 LLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNS----------------RGYNLLHMYLESFS 157 (494)
T ss_pred HHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCC----------------CCCCHHHHHHHhcc
Confidence 4467888998888899999877654 7899999999999999 55432 499999998764
Q ss_pred CCHHHHHHHHhcCCCCCC-C-CCCCChHHHHHHHcC----CHHHHHHHHHcCCCCCCc----------------------
Q psy875 396 GNLTLVQSLLKQGHPVKV-Q-DSAGWLPLHEAANHG----HTDIVQALVSAGADPNDK---------------------- 447 (480)
Q Consensus 396 ~~~~~~~~ll~~g~~~~~-~-~~~g~t~l~~a~~~~----~~~~~~~Ll~~g~~~~~~---------------------- 447 (480)
++.+++++|+++|++++. . .. |.||||+|+..+ +.+++++|+++|++++..
T Consensus 158 ~~~~iv~~Ll~~Gadi~~~~~~~-g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~ 236 (494)
T PHA02989 158 VKKDVIKILLSFGVNLFEKTSLY-GLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKE 236 (494)
T ss_pred CCHHHHHHHHHcCCCcccccccc-CCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccc
Confidence 688999999999999876 2 24 479999988764 889999999999887632
Q ss_pred --------------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 448 --------------VQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 448 --------------~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
.+|..|+||||+|+..|+.+++++|+++|+|++
T Consensus 237 ~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin 283 (494)
T PHA02989 237 FKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIY 283 (494)
T ss_pred hHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcc
Confidence 235569999999999999999999999999985
No 39
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.83 E-value=1.4e-19 Score=157.46 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=109.1
Q ss_pred CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCC
Q psy875 334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARG--NLTLVQSLLKQGHPV 411 (480)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~--~~~~~~~ll~~g~~~ 411 (480)
....+|+++|+..|+.++|+.|++.+... +..|.||||+|+..+ +.+++++|+++|+++
T Consensus 19 ~~~~~pL~~A~~~~~~~~vk~Li~~~n~~-------------------~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv 79 (209)
T PHA02859 19 YRYCNPLFYYVEKDDIEGVKKWIKFVNDC-------------------NDLYETPIFSCLEKDKVNVEILKFLIENGADV 79 (209)
T ss_pred hccCcHHHHHHHhCcHHHHHHHHHhhhcc-------------------CccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC
Confidence 34568999999999999999998753222 234999999999854 899999999999999
Q ss_pred CCCC-CCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCC
Q psy875 412 KVQD-SAGWLPLHEAANH---GHTDIVQALVSAGADPNDKVQDSAGWLPLHEAAN--HGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 412 ~~~~-~~g~t~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~--~~~~~~~~~Ll~~ga~~~ 480 (480)
|.++ ..|+||||+|+.. ++.+++++|+++|++++ ..|..|.||||+|+. .++.+++++|+++|++++
T Consensus 80 n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin--~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin 152 (209)
T PHA02859 80 NFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT--EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL 152 (209)
T ss_pred CccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc
Confidence 9997 5899999998764 47999999999999999 569999999999876 468999999999999975
No 40
>PHA02946 ankyin-like protein; Provisional
Probab=99.83 E-value=9.1e-20 Score=176.65 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=118.6
Q ss_pred hccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc-------------------cCCCccc-cC
Q psy875 322 IKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL-------------------ETPTTSL-LE 381 (480)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~-------------------~~~~~~~-~~ 381 (480)
+...+.++|..+..+.||||+|+..|+.++|++|+++|++++..+..+.++ ..+...+ ..
T Consensus 58 Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~ 137 (446)
T PHA02946 58 LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSV 137 (446)
T ss_pred HHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCccccc
Confidence 344577889999999999999999999999999999999998764332111 1111111 23
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHG--HTDIVQALVSAGADPNDKVQDSAGWLPLHE 459 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~ 459 (480)
+..|.|||| |+..++.++++.|++.|++++.+|..|+||||+|+..+ +.+++++|+++|++++ .+|..|.||||+
T Consensus 138 d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin--~~d~~G~TpLH~ 214 (446)
T PHA02946 138 DEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS--KPDHDGNTPLHI 214 (446)
T ss_pred CCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc--ccCCCCCCHHHH
Confidence 566888886 55667888888888888888888888888888877654 4678888888888888 558888899998
Q ss_pred HHHcC--CHHHHHHHHHcCCCCC
Q psy875 460 AANHG--HTDIVQALVSAGAEVS 480 (480)
Q Consensus 460 A~~~~--~~~~~~~Ll~~ga~~~ 480 (480)
|+..+ +.+++++|+. |+++|
T Consensus 215 Aa~~~~~~~~iv~lLl~-gadin 236 (446)
T PHA02946 215 VCSKTVKNVDIINLLLP-STDVN 236 (446)
T ss_pred HHHcCCCcHHHHHHHHc-CCCCC
Confidence 88875 7788888874 78775
No 41
>PHA02917 ankyrin-like protein; Provisional
Probab=99.83 E-value=5.3e-20 Score=185.04 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=123.1
Q ss_pred hhccCCccchhhhccCCCcCC-------------CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCC
Q psy875 310 TNRKRAPRSHFLIKRNDKDSN-------------LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPT 376 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~ 376 (480)
++..|.||||+++..+..+++ .+..+..+++++|+..|+.++|++|+++|+|++..+.
T Consensus 64 ~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~--------- 134 (661)
T PHA02917 64 KNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCE--------- 134 (661)
T ss_pred cCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCC---------
Confidence 344689999999887764322 1112233677889999999999999999999997643
Q ss_pred ccccCCCCCchHHHHHH--HcCCHHHHHHHHhcCCCCCCCCC---CC-----------ChHHHHHHH-----------cC
Q psy875 377 TSLLEKPRGETALHVAA--ARGNLTLVQSLLKQGHPVKVQDS---AG-----------WLPLHEAAN-----------HG 429 (480)
Q Consensus 377 ~~~~~~~~g~~~l~~a~--~~~~~~~~~~ll~~g~~~~~~~~---~g-----------~t~l~~a~~-----------~~ 429 (480)
.|.||||.++ ..|+.+++++|+++|+++|..|. .| .||||+|+. .+
T Consensus 135 -------~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~ 207 (661)
T PHA02917 135 -------NHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYV 207 (661)
T ss_pred -------CCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccC
Confidence 4999999654 46899999999999999987653 23 599999986 46
Q ss_pred CHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCC
Q psy875 430 HTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT--DIVQALVSAGAEV 479 (480)
Q Consensus 430 ~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~--~~~~~Ll~~ga~~ 479 (480)
+.+++++|+++|++++ ..|.+|.||||+|+..|+. +++++|++ |+++
T Consensus 208 ~~eiv~~Li~~Gadvn--~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~ 256 (661)
T PHA02917 208 RPEVVKCLINHGIKPS--SIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDN 256 (661)
T ss_pred cHHHHHHHHHCCCCcc--cCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcc
Confidence 8999999999999999 5599999999999999985 79999975 8765
No 42
>PHA02795 ankyrin-like protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=169.53 Aligned_cols=130 Identities=16% Similarity=0.113 Sum_probs=115.7
Q ss_pred CCcCCCchHHHHHHh--hCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcC
Q psy875 331 LNLYNIESITISRNR--LGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQG 408 (480)
Q Consensus 331 ~~~~~~~~~~~~a~~--~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g 408 (480)
......+++||.++. .|+.++|++|+++|||++.. ++.||+|.|+..++.+++++|+.+|
T Consensus 111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~------------------~~~t~lh~A~~~~~~eIVk~Lls~G 172 (437)
T PHA02795 111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI------------------ECLNAYFRGICKKESSVVEFILNCG 172 (437)
T ss_pred hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC------------------CCCCHHHHHHHcCcHHHHHHHHhcC
Confidence 455668899998888 89999999999999999863 2689999999999999999999999
Q ss_pred CCCC-CCC-----CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 409 HPVK-VQD-----SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 409 ~~~~-~~~-----~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
++.. ..+ ..|.||+|.|+..++.+++++|+++|+++| ..|..|.||||+|+..|+.+++++|+++|++++
T Consensus 173 a~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN--~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN 248 (437)
T PHA02795 173 IPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN--QLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN 248 (437)
T ss_pred CcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC--cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 8543 221 347899999999999999999999999999 569999999999999999999999999999985
No 43
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.82 E-value=1.6e-19 Score=188.64 Aligned_cols=137 Identities=19% Similarity=0.197 Sum_probs=99.0
Q ss_pred cCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHH
Q psy875 324 RNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQS 403 (480)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ 403 (480)
+.+.++|..+..+.+++|.|+..|+.+++++|+++|++++..+ .+|.||||+|+..|+.++++.
T Consensus 546 ~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d----------------~~G~TpL~~A~~~g~~~iv~~ 609 (823)
T PLN03192 546 KAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD----------------ANGNTALWNAISAKHHKIFRI 609 (823)
T ss_pred HCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcC----------------CCCCCHHHHHHHhCCHHHHHH
Confidence 3444555666666666666666666666666666666665442 236666666666666666666
Q ss_pred HHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 404 LLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 404 ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
|+..++..+. ..|.+|||.|+..|+.++++.|+++|+++| .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 610 L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin--~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~ 682 (823)
T PLN03192 610 LYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVD--SEDHQGATALQVAMAEDHVDMVRLLIMNGADVD 682 (823)
T ss_pred HHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence 6655544332 234566677778888888899999999999 569999999999999999999999999999985
No 44
>KOG4177|consensus
Probab=99.81 E-value=1.1e-19 Score=184.98 Aligned_cols=169 Identities=31% Similarity=0.363 Sum_probs=146.9
Q ss_pred HhhhccCCccchhhhccC------------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhh------
Q psy875 308 KRTNRKRAPRSHFLIKRN------------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLS------ 369 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~------ 369 (480)
......|.|++|++...+ +.++|.....+.++++.|+..|+.++++.|++.++..+......
T Consensus 434 ~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhl 513 (1143)
T KOG4177|consen 434 NAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHL 513 (1143)
T ss_pred hhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhh
Confidence 345667899999999988 56778889999999999999999999999999985544432211
Q ss_pred -----------ccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q psy875 370 -----------ATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV 438 (480)
Q Consensus 370 -----------~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll 438 (480)
..+........++..|.||||.||.+|+.++|++|+++|++++.++..|+||||.||..|+.+|+.+|+
T Consensus 514 a~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLl 593 (1143)
T KOG4177|consen 514 AADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLL 593 (1143)
T ss_pred hhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHH
Confidence 112456666677778999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875 439 SAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478 (480)
Q Consensus 439 ~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 478 (480)
++|+++| ..|.+|.|||++|++.|+.++++.|+..|++
T Consensus 594 k~GA~vn--a~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 594 KHGASVN--AADLDGFTPLHIAVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred HcCCCCC--cccccCcchhHHHHHhcccchhhHHHhccCc
Confidence 9999999 6699999999999999999999999998876
No 45
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.81 E-value=2.5e-19 Score=148.65 Aligned_cols=97 Identities=18% Similarity=0.278 Sum_probs=89.0
Q ss_pred CCCCchHHHHHHHcCCH---HHHHHHHhcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCCcH
Q psy875 382 KPRGETALHVAAARGNL---TLVQSLLKQGHPVKVQD-SAGWLPLHEAANHGHTDIVQALVS-AGADPNDKVQDSAGWLP 456 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~---~~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~g~tp 456 (480)
+..|.||||+|+..|+. +++++|++.|++++.++ ..|+||||+|+..++.+++++|+. .|++++ ..|..|.||
T Consensus 52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n--~~~~~g~tp 129 (154)
T PHA02736 52 NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME--ILNYAFKTP 129 (154)
T ss_pred cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc--cccCCCCCH
Confidence 45699999999999986 46889999999999998 489999999999999999999998 499999 569999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 457 LHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 457 l~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
||+|+..|+.+++++|+.+|++++
T Consensus 130 L~~A~~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 130 YYVACERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC
Confidence 999999999999999999999863
No 46
>KOG0502|consensus
Probab=99.81 E-value=1.2e-19 Score=147.34 Aligned_cols=132 Identities=27% Similarity=0.229 Sum_probs=119.7
Q ss_pred CCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHH
Q psy875 325 NDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSL 404 (480)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l 404 (480)
.+..+|..+..+.++|+||+..|++++|++|++.|+|+...-.. .+++|.+|++.|..++|++|
T Consensus 149 ~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~----------------resALsLAt~ggytdiV~lL 212 (296)
T KOG0502|consen 149 VNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKY----------------RESALSLATRGGYTDIVELL 212 (296)
T ss_pred hhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhh----------------hhhhHhHHhcCChHHHHHHH
Confidence 55567888899999999999999999999999999999876443 78999999999999999999
Q ss_pred HhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy875 405 LKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475 (480)
Q Consensus 405 l~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 475 (480)
++.+.|+|.-|.+|.|||-+|++.+|.+|++.|+..|++++ ..+..|.+++..|+..|.. +|+.++++
T Consensus 213 L~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t--~e~dsGy~~mdlAValGyr-~Vqqvie~ 280 (296)
T KOG0502|consen 213 LTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT--QEDDSGYWIMDLAVALGYR-IVQQVIEK 280 (296)
T ss_pred HhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc--cccccCCcHHHHHHHhhhH-HHHHHHHH
Confidence 99999999999999999999999999999999999999999 4588999999999999988 56555554
No 47
>KOG0510|consensus
Probab=99.80 E-value=1.9e-19 Score=172.79 Aligned_cols=166 Identities=25% Similarity=0.211 Sum_probs=137.0
Q ss_pred hccCCccchhhhccCC----------------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccC
Q psy875 311 NRKRAPRSHFLIKRND----------------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLET 374 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~ 374 (480)
+..|.+|+|.+++.+. ..+|..+.++.+|+|.|+..|+++.++.+++.|........ ......
T Consensus 184 ~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~-~~~~q~ 262 (929)
T KOG0510|consen 184 DIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQL-DAMQQE 262 (929)
T ss_pred cCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhh-HHHHHH
Confidence 4467777887776654 36788899999999999999999999999999875543210 001122
Q ss_pred CCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCC-CCCCccCCCC
Q psy875 375 PTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS-AGA-DPNDKVQDSA 452 (480)
Q Consensus 375 ~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~-~~~~~~~~~~ 452 (480)
....+-.|.+|.||||+|+..|+.+.+..|+..|++++.++.++.||||.|+..|+..+|+.|++ .|. ..| ..|..
T Consensus 263 kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rlln--e~D~~ 340 (929)
T KOG0510|consen 263 KELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLN--ESDLH 340 (929)
T ss_pred HHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccc--ccccc
Confidence 23344567789999999999999999999999999999999999999999999999999999999 432 334 35789
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 453 GWLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 453 g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
|.||||+|++.||..++++|+++||+.
T Consensus 341 g~tpLHlaa~~gH~~v~qlLl~~GA~~ 367 (929)
T KOG0510|consen 341 GMTPLHLAAKSGHDRVVQLLLNKGALF 367 (929)
T ss_pred CCCchhhhhhcCHHHHHHHHHhcChhh
Confidence 999999999999999999999999975
No 48
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.80 E-value=9.9e-19 Score=180.48 Aligned_cols=151 Identities=25% Similarity=0.209 Sum_probs=133.2
Q ss_pred ccCCccchhhhccC------------CCcCCCCcCCCchHHHHHHhhC-cHHHHHHHHhcCCchhhhhhhhccccCCCcc
Q psy875 312 RKRAPRSHFLIKRN------------DKDSNLNLYNIESITISRNRLG-AQEVRKLLSLLNADLLVHLNLSATLETPTTS 378 (480)
Q Consensus 312 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~a~~~~-~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~ 378 (480)
..|.||||+++..+ +.+++..+..+.+++|.|+..| +.+++++|+..|++++..+.
T Consensus 271 ~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~----------- 339 (682)
T PHA02876 271 DCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADR----------- 339 (682)
T ss_pred CCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCccc-----------
Confidence 35888888887654 4466777888999999999999 69999999999999987643
Q ss_pred ccCCCCCchHHHHHHHc-CCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHH
Q psy875 379 LLEKPRGETALHVAAAR-GNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPL 457 (480)
Q Consensus 379 ~~~~~~g~~~l~~a~~~-~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl 457 (480)
.|.||||+|+.. ++.++++.|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.|||
T Consensus 340 -----~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~--~~~~~g~T~L 412 (682)
T PHA02876 340 -----LYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE--ALSQKIGTAL 412 (682)
T ss_pred -----CCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--ccCCCCCchH
Confidence 499999999985 57899999999999999999999999999999999999999999999999 5588999999
Q ss_pred HHHHHcCC-HHHHHHHHHcCCCCC
Q psy875 458 HEAANHGH-TDIVQALVSAGAEVS 480 (480)
Q Consensus 458 ~~A~~~~~-~~~~~~Ll~~ga~~~ 480 (480)
|+|+..++ ..++++|+++|+++|
T Consensus 413 h~A~~~~~~~~~vk~Ll~~gadin 436 (682)
T PHA02876 413 HFALCGTNPYMSVKTLIDRGANVN 436 (682)
T ss_pred HHHHHcCCHHHHHHHHHhCCCCCC
Confidence 99988765 567999999999985
No 49
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=1.3e-17 Score=170.10 Aligned_cols=212 Identities=16% Similarity=0.149 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
+..+.+++.+|.++..+|++++|+.+|++++++ .+....++..+|.+| ...|++++|+.++++++++.+..
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P~~~~~~~~la~~~-~~~g~~~eA~~~~~~al~~~p~~---- 398 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DPRVTQSYIKRASMN-LELGDPDKAEEDFDKALKLNSED---- 398 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCC----
Confidence 344555666666666666666666666666665 444445555666663 33366666666666665542211
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL 193 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 193 (480)
..++..+|.+|..+|++++|+.+|++++...+. ...++.++|.++..+|++++|+.+|+++++.. |..+.++
T Consensus 399 --~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~----P~~~~~~ 470 (615)
T TIGR00990 399 --PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD--FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF----PEAPDVY 470 (615)
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHH
Confidence 234555666666666666666666666554432 22445555555555555555555555555542 2233445
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC-----------------------------------cHHHHHHHHHHH
Q psy875 194 GEIGDLYELQEKPFELVVSTHEKALDLARQNKD-----------------------------------DKLIRTVMRSMK 238 (480)
Q Consensus 194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------------------------~~~~~~~~~~l~ 238 (480)
..+|.++..+|+ +++|+..|++++.+...... .+....++..+|
T Consensus 471 ~~lg~~~~~~g~-~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la 549 (615)
T TIGR00990 471 NYYGELLLDQNK-FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHccC-HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 555555555555 55555555555543221100 122233566788
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHh
Q psy875 239 KLYKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
.++..+|++++|..+++++.++..+
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHHhcc
Confidence 8888888888888888888776554
No 50
>KOG1126|consensus
Probab=99.79 E-value=1.8e-18 Score=163.56 Aligned_cols=236 Identities=18% Similarity=0.229 Sum_probs=182.1
Q ss_pred hHHHhhccchhhhhhh-HHHH-hhhhhh-hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-------------
Q psy875 4 KIALSRGIGLSDSLDS-ACTE-LHTVLS-SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH------------- 67 (480)
Q Consensus 4 ~~~~~~g~~~~~~l~~-~~~~-~~~~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------- 67 (480)
.++-.+|.. +.++.. .|.+ +.+-++ -.......++...+|..|+..++|++|.++|+.+.+..
T Consensus 318 ~llr~~~~~-~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~ 396 (638)
T KOG1126|consen 318 ELLRGLGEG-YRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTT 396 (638)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHH
Confidence 455666777 555555 4544 222222 22333566899999999999999999999999987651
Q ss_pred -----------------hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC
Q psy875 68 -----------------ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD 130 (480)
Q Consensus 68 -----------------~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~ 130 (480)
....+....+|..+|++|..+ ++++.|+++|++|+.+. +..+.+|..+|.-+....
T Consensus 397 LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQld------p~faYayTLlGhE~~~~e 469 (638)
T KOG1126|consen 397 LWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQLD------PRFAYAYTLLGHESIATE 469 (638)
T ss_pred HHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhccC------CccchhhhhcCChhhhhH
Confidence 123344456788999997677 99999999999999883 445788889999999999
Q ss_pred ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHH
Q psy875 131 NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELV 210 (480)
Q Consensus 131 ~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 210 (480)
.|++|..+|++++...+ ....+|+.||.+|.++++++.|+-+|++|+++ .|........+|.++.+.|+ .++|
T Consensus 470 e~d~a~~~fr~Al~~~~--rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I----NP~nsvi~~~~g~~~~~~k~-~d~A 542 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDP--RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI----NPSNSVILCHIGRIQHQLKR-KDKA 542 (638)
T ss_pred HHHhHHHHHHhhhcCCc--hhhHHHHhhhhheeccchhhHHHHHHHhhhcC----CccchhHHhhhhHHHHHhhh-hhHH
Confidence 99999999999996664 45588999999999999999999999999999 55666778889999999999 9999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 211 VSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 211 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
+.+|++|+.+- +.-.-..+..+.++..++++++|+..+++..++
T Consensus 543 L~~~~~A~~ld------~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 543 LQLYEKAIHLD------PKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHHHhcC------CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 99999998762 222223346677888888888888887776654
No 51
>KOG0512|consensus
Probab=99.79 E-value=1.4e-18 Score=135.90 Aligned_cols=123 Identities=26% Similarity=0.340 Sum_probs=106.5
Q ss_pred CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875 335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ 414 (480)
Q Consensus 335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~ 414 (480)
++...+.+|+..+.++.|+.|++..++ ..+.+|.+|.||||.|+.+|+.++|+.|+..|++++.+
T Consensus 62 dp~rl~lwaae~nrl~eV~~lL~e~an---------------~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~ 126 (228)
T KOG0512|consen 62 DPIRLLLWAAEKNRLTEVQRLLSEKAN---------------HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAK 126 (228)
T ss_pred CHHHHHHHHHhhccHHHHHHHHHhccc---------------cccccccccccHHHHHHhcCchHHHHHHHHccCCcccc
Confidence 455677889999999999999887654 34556788999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCH-HHHHHHHH
Q psy875 415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT-DIVQALVS 474 (480)
Q Consensus 415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~-~~~~~Ll~ 474 (480)
...||||||.||.+...+|+..|+.+|+|+| .+.....||||+|+...+. ..+.+|+.
T Consensus 127 T~~GWTPLhSAckWnN~~va~~LLqhgaDVn--A~t~g~ltpLhlaa~~rn~r~t~~~Ll~ 185 (228)
T KOG0512|consen 127 TNEGWTPLHSACKWNNFEVAGRLLQHGADVN--AQTKGLLTPLHLAAGNRNSRDTLELLLH 185 (228)
T ss_pred cccCccchhhhhcccchhHHHHHHhccCccc--ccccccchhhHHhhcccchHHHHHHHhh
Confidence 9999999999999999999999999999999 5577789999999977654 45566653
No 52
>KOG1155|consensus
Probab=99.79 E-value=2.3e-17 Score=149.35 Aligned_cols=204 Identities=16% Similarity=0.206 Sum_probs=177.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT 117 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~ 117 (480)
..+..+|+.|..+++.++|+.+|++|+++ ++....+|..||.- +..+++...|+..|++|+++.+.. -.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkL----Np~~~~aWTLmGHE-yvEmKNt~AAi~sYRrAvdi~p~D------yR 399 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKL----NPKYLSAWTLMGHE-YVEMKNTHAAIESYRRAVDINPRD------YR 399 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhc----CcchhHHHHHhhHH-HHHhcccHHHHHHHHHHHhcCchh------HH
Confidence 35667899999999999999999999999 88889999999999 666699999999999999986532 57
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG 197 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~ 197 (480)
+++.||+.|..++...=|+.||++++...|... ..+..||.+|.++++.++|+++|++++... .....++..||
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs--Rlw~aLG~CY~kl~~~~eAiKCykrai~~~----dte~~~l~~La 473 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDS--RLWVALGECYEKLNRLEEAIKCYKRAILLG----DTEGSALVRLA 473 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHhccHHHHHHHHHHHHhcc----ccchHHHHHHH
Confidence 899999999999999999999999998776544 789999999999999999999999999883 33467899999
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 198 DLYELQEKPFELVVSTHEKALDLARQNKD-DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
++|.+.++ +++|..+|++.++.....+. .+....+...|+..+.+.+++++|..|..++..
T Consensus 474 kLye~l~d-~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 474 KLYEELKD-LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHh-HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 99999999 99999999999986644443 344666777799999999999999998766543
No 53
>KOG0502|consensus
Probab=99.78 E-value=2e-18 Score=140.40 Aligned_cols=147 Identities=27% Similarity=0.196 Sum_probs=128.9
Q ss_pred CCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHH
Q psy875 314 RAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAA 393 (480)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~ 393 (480)
|..-.+-....++...|..+.-+.+++.+++...+++.+..+.++-.+ .. |..|.|||.||+
T Consensus 107 ~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~VN--~~----------------De~GfTpLiWAa 168 (296)
T KOG0502|consen 107 GSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKVN--AC----------------DEFGFTPLIWAA 168 (296)
T ss_pred CCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhcccc--Cc----------------cccCchHhHHHH
Confidence 344445555667777788888889999999999999998888765433 22 345999999999
Q ss_pred HcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy875 394 ARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473 (480)
Q Consensus 394 ~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll 473 (480)
..|++.+|++|++.|+++........|+|.+|++.|..++|++|+.++.|+| +-|.+|.|||-+|++.+|.+|++.|+
T Consensus 169 a~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN--vyDwNGgTpLlyAvrgnhvkcve~Ll 246 (296)
T KOG0502|consen 169 AKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVN--VYDWNGGTPLLYAVRGNHVKCVESLL 246 (296)
T ss_pred hcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc--eeccCCCceeeeeecCChHHHHHHHH
Confidence 9999999999999999999998888999999999999999999999999999 66999999999999999999999999
Q ss_pred HcCCCCC
Q psy875 474 SAGAEVS 480 (480)
Q Consensus 474 ~~ga~~~ 480 (480)
..||+++
T Consensus 247 ~sGAd~t 253 (296)
T KOG0502|consen 247 NSGADVT 253 (296)
T ss_pred hcCCCcc
Confidence 9999985
No 54
>KOG0514|consensus
Probab=99.77 E-value=4.4e-18 Score=148.74 Aligned_cols=149 Identities=25% Similarity=0.331 Sum_probs=123.0
Q ss_pred HhhhccCCccchhhhccCCC------------cCCCCcCCCchHHHHHHh-----hCcHHHHHHHHhcCCchhhhhhhhc
Q psy875 308 KRTNRKRAPRSHFLIKRNDK------------DSNLNLYNIESITISRNR-----LGAQEVRKLLSLLNADLLVHLNLSA 370 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~a~~-----~~~~~~v~~L~~~g~~~~~~~~~~~ 370 (480)
+-.+..|+|+|||++...+. +++..+..+-++.+.++. ..+.++|.-|...| |+|.+-..
T Consensus 262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ-- 338 (452)
T KOG0514|consen 262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQ-- 338 (452)
T ss_pred hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhh--
Confidence 34556799999998877665 445556666677766654 46778888887775 56655442
Q ss_pred cccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCccC
Q psy875 371 TLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA-GADPNDKVQ 449 (480)
Q Consensus 371 ~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~ 449 (480)
.|.|+|++|+.+|..++|+.||..|+|+|..|.+|.|+|++||.+||.+++++|+.. ++|+. ..
T Consensus 339 -------------~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~s--Lt 403 (452)
T KOG0514|consen 339 -------------HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS--LT 403 (452)
T ss_pred -------------hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccce--ee
Confidence 299999999999999999999999999999999999999999999999999999986 66666 66
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875 450 DSAGWLPLHEAANHGHTDIVQALVS 474 (480)
Q Consensus 450 ~~~g~tpl~~A~~~~~~~~~~~Ll~ 474 (480)
|.+|.|+|.+|...||.+|.-+|..
T Consensus 404 D~DgSTAl~IAleagh~eIa~mlYa 428 (452)
T KOG0514|consen 404 DVDGSTALSIALEAGHREIAVMLYA 428 (452)
T ss_pred cCCCchhhhhHHhcCchHHHHHHHH
Confidence 9999999999999999999877754
No 55
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=7e-17 Score=164.79 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875 33 CKDLASCYISLAQTYK---DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN 109 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~ 109 (480)
.......+..+|..+. ..++|++|+++|+++++. ....+..+.++..+|.+|... |++++|+.++++++.+.+
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~-~~~~~~~a~a~~~lg~~~~~~-g~~~eA~~~~~kal~l~P-- 362 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDL-GKLGEKEAIALNLRGTFKCLK-GKHLEALADLSKSIELDP-- 362 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCC--
Confidence 3455555666665543 458999999999999987 444567788899999995555 999999999999998744
Q ss_pred CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875 110 KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA 189 (480)
Q Consensus 110 ~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 189 (480)
....++..+|.++..+|++++|+.+|++++...+ ....+++.+|.+|...|++++|+.+|++++++ .|..
T Consensus 363 ----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l----~P~~ 432 (615)
T TIGR00990 363 ----RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS--EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL----DPDF 432 (615)
T ss_pred ----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CccC
Confidence 2356788999999999999999999999987754 44578999999999999999999999999998 4445
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
...+.++|.++..+|+ +++|+..|++++..
T Consensus 433 ~~~~~~la~~~~~~g~-~~eA~~~~~~al~~ 462 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGS-IASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence 6778899999999999 99999999999875
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.77 E-value=2.1e-16 Score=141.20 Aligned_cols=204 Identities=14% Similarity=0.214 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
...+..++.+|..+...|++++|+..++++++. .+....++..+|.+|... |++++|+.++++++...+..
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~---- 98 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH----DPDDYLAYLALALYYQQL-GELEKAEDSFRRALTLNPNN---- 98 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC----
Confidence 456788999999999999999999999999988 555667888899995555 99999999999999875432
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL 193 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 193 (480)
..++.++|.++...|++++|+.++++++.....+.....+.++|.++...|++++|..++.++++..+ .....+
T Consensus 99 --~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~ 172 (234)
T TIGR02521 99 --GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP----QRPESL 172 (234)
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CChHHH
Confidence 35778999999999999999999999987554455567788999999999999999999999998843 335678
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 194 GEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
..+|.++...|+ +++|..++++++... +. ....+..++.++...|+.++|..+.+.+..
T Consensus 173 ~~la~~~~~~~~-~~~A~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 173 LELAELYYLRGQ-YKDARAYLERYQQTY---NQ---TAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHhC---CC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 899999999999 999999999998871 12 234455788999999999999998877654
No 57
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.76 E-value=6.3e-18 Score=126.15 Aligned_cols=86 Identities=43% Similarity=0.664 Sum_probs=80.7
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHH
Q psy875 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDI 468 (480)
Q Consensus 389 l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~ 468 (480)
||+|+..|+.+++++|++.+.+++. |.||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~ 74 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADIN--SQDKNGNTALHYAAENGNLEI 74 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT---BSTTSSBHHHHHHHTTHHHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccccc--ccCCCCCCHHHHHHHcCCHHH
Confidence 7999999999999999999988876 8899999999999999999999999999 558999999999999999999
Q ss_pred HHHHHHcCCCCC
Q psy875 469 VQALVSAGAEVS 480 (480)
Q Consensus 469 ~~~Ll~~ga~~~ 480 (480)
+++|+++|++++
T Consensus 75 ~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 75 VKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHTTT-TT
T ss_pred HHHHHHcCCCCC
Confidence 999999999985
No 58
>KOG1126|consensus
Probab=99.76 E-value=1.2e-17 Score=158.06 Aligned_cols=201 Identities=13% Similarity=0.161 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
-..+|..+|++|.-+++++.|+++|++|+.+ .+..+++|..+|.- +.....|+.|..+|++|+.+.. ..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----dp~faYayTLlGhE-~~~~ee~d~a~~~fr~Al~~~~------rh 488 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL----DPRFAYAYTLLGHE-SIATEEFDKAMKSFRKALGVDP------RH 488 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----CCccchhhhhcCCh-hhhhHHHHhHHHHHHhhhcCCc------hh
Confidence 3457899999999999999999999999999 78888999999999 6666999999999999998744 33
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 195 (480)
-.+++.+|.+|.++++++.|..+|++|+.+.|... .+...+|.++.++|+.++|+.+|++|+.+ .+..+-..+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns--vi~~~~g~~~~~~k~~d~AL~~~~~A~~l----d~kn~l~~~~ 562 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS--VILCHIGRIQHQLKRKDKALQLYEKAIHL----DPKNPLCKYH 562 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccch--hHHhhhhHHHHHhhhhhHHHHHHHHHHhc----CCCCchhHHH
Confidence 56899999999999999999999999999987655 56677999999999999999999999999 3444566778
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
.|.+++..++ |++|+..+++..++ .+....++..+|++|.+.|+.+.|+..+--+..+
T Consensus 563 ~~~il~~~~~-~~eal~~LEeLk~~------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGR-YVEALQELEELKEL------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcc-hHHHHHHHHHHHHh------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 9999999999 99999999998777 5677889999999999999999999888665543
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.76 E-value=2.7e-16 Score=130.38 Aligned_cols=206 Identities=16% Similarity=0.151 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~ 111 (480)
.....+.+...||.-|...|++..|...+++|++. .|....+|..++.+| ...|+.+.|.+.|++|+.+.+..
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~----DPs~~~a~~~~A~~Y-q~~Ge~~~A~e~YrkAlsl~p~~-- 102 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH----DPSYYLAHLVRAHYY-QKLGENDLADESYRKALSLAPNN-- 102 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHH-HHcCChhhHHHHHHHHHhcCCCc--
Confidence 44567889999999999999999999999999999 888888999999995 55599999999999999997655
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 191 (480)
+.+++|.|.....+|+|++|..+|++++....-+..+.++-|+|.|-.++|+++.|.++|++++++. +....
T Consensus 103 ----GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d----p~~~~ 174 (250)
T COG3063 103 ----GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD----PQFPP 174 (250)
T ss_pred ----cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC----cCCCh
Confidence 5689999999999999999999999999776666778999999999999999999999999999994 44455
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
....++..++..|+ |..|..++++...- .......+....++-...|+-..|.+|-.+..+
T Consensus 175 ~~l~~a~~~~~~~~-y~~Ar~~~~~~~~~------~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 175 ALLELARLHYKAGD-YAPARLYLERYQQR------GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHHhccc-chHHHHHHHHHHhc------ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 67789999999999 99999998876543 225667778888899999999999988877655
No 60
>KOG0195|consensus
Probab=99.76 E-value=2.2e-18 Score=145.89 Aligned_cols=151 Identities=24% Similarity=0.259 Sum_probs=125.6
Q ss_pred hccCC-ccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHH
Q psy875 311 NRKRA-PRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETAL 389 (480)
Q Consensus 311 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l 389 (480)
++.|+ ......+.....|.|..+..+-+++|||++.|+..+|+.|+..|+.+|..+- ...|||
T Consensus 8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnm----------------gddtpl 71 (448)
T KOG0195|consen 8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNM----------------GDDTPL 71 (448)
T ss_pred hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccC----------------CCCcch
Confidence 34444 2345566777788899999999999999999999999999999999997643 267999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q psy875 390 HVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIV 469 (480)
Q Consensus 390 ~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~ 469 (480)
|+|+..|+.++|..|+...+|+|..+..|.||||+||..|...+.+-|+..|+.++ +.++.|.|||..|...-..-+.
T Consensus 72 hlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~--icnk~g~tpldkakp~l~~~l~ 149 (448)
T KOG0195|consen 72 HLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN--ICNKKGMTPLDKAKPMLKNTLL 149 (448)
T ss_pred hhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceee--ecccCCCCchhhhchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 6699999999887533222233
Q ss_pred HHHHHcCCCC
Q psy875 470 QALVSAGAEV 479 (480)
Q Consensus 470 ~~Ll~~ga~~ 479 (480)
+.--++|-++
T Consensus 150 e~aek~gq~~ 159 (448)
T KOG0195|consen 150 EIAEKHGQSP 159 (448)
T ss_pred HHHHHhCCCC
Confidence 3334455554
No 61
>PHA02917 ankyrin-like protein; Provisional
Probab=99.76 E-value=9.7e-18 Score=168.84 Aligned_cols=150 Identities=11% Similarity=0.087 Sum_probs=117.6
Q ss_pred hccCCccchhhh--------------ccCCCcCCCCcCCCchHHHHHHhhCcHH----HHHHHHhcCCchhhhhhhhccc
Q psy875 311 NRKRAPRSHFLI--------------KRNDKDSNLNLYNIESITISRNRLGAQE----VRKLLSLLNADLLVHLNLSATL 372 (480)
Q Consensus 311 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~----~v~~L~~~g~~~~~~~~~~~~~ 372 (480)
+..|+||||+++ ...+.+++..+..+.|||++|+..|+.+ +++.|++.+...+..
T Consensus 29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~------- 101 (661)
T PHA02917 29 NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIN------- 101 (661)
T ss_pred CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCC-------
Confidence 445777777642 2356677777778888888888888744 456777765433332
Q ss_pred cCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHH--HHcCCHHHHHHHHHcCCCCCCccCC
Q psy875 373 ETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEA--ANHGHTDIVQALVSAGADPNDKVQD 450 (480)
Q Consensus 373 ~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~~~ 450 (480)
+..+++|.|+..++.++|++|+++|+++|..|..|+||||.+ +..|+.+++++|+++|++++. .|
T Consensus 102 -----------~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~--~d 168 (661)
T PHA02917 102 -----------DFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLY--ED 168 (661)
T ss_pred -----------CcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccc--cc
Confidence 134677888899999999999999999999999999999964 457899999999999999983 23
Q ss_pred C---CC-----------CcHHHHHHH-----------cCCHHHHHHHHHcCCCCC
Q psy875 451 S---AG-----------WLPLHEAAN-----------HGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 451 ~---~g-----------~tpl~~A~~-----------~~~~~~~~~Ll~~ga~~~ 480 (480)
. .| .||||+|+. .++.+++++|+++|+|+|
T Consensus 169 ~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn 223 (661)
T PHA02917 169 EDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPS 223 (661)
T ss_pred cccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcc
Confidence 2 33 599999986 468999999999999986
No 62
>PHA02730 ankyrin-like protein; Provisional
Probab=99.75 E-value=8.1e-18 Score=165.09 Aligned_cols=147 Identities=12% Similarity=0.024 Sum_probs=122.6
Q ss_pred CCccchhhhccCCCcCCCCcCCCchHHHHHHhhCc----HHHHHHHHhcCCc--hhhhhhhhccccCCCccccCCCCCch
Q psy875 314 RAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGA----QEVRKLLSLLNAD--LLVHLNLSATLETPTTSLLEKPRGET 387 (480)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~v~~L~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~g~~ 387 (480)
.+..+.-++...|+++|.. ..+.+|||.|+..++ .+++++|+++|++ ++..+ ..|.|
T Consensus 357 v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd----------------~~G~T 419 (672)
T PHA02730 357 VSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVS----------------NNGRL 419 (672)
T ss_pred CcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccc----------------cCCCc
Confidence 3456666677778999986 678899998887764 8999999999984 65443 34999
Q ss_pred HHHH---HHHcC---------CHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCC-CCC
Q psy875 388 ALHV---AAARG---------NLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS-AGW 454 (480)
Q Consensus 388 ~l~~---a~~~~---------~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~-~g~ 454 (480)
|||. +...+ ..+++++|+.+|+++|.+|..|.||||+|+..++.+++++|+.+|++++ ..+. .|.
T Consensus 420 ~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN--~~d~~~g~ 497 (672)
T PHA02730 420 CMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVN--TTSRSIIN 497 (672)
T ss_pred hHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCcCCc
Confidence 9984 33232 2357999999999999999999999999999999999999999999999 5575 599
Q ss_pred cHHHHHHH--cCCHHHHHHHHHcCCCC
Q psy875 455 LPLHEAAN--HGHTDIVQALVSAGAEV 479 (480)
Q Consensus 455 tpl~~A~~--~~~~~~~~~Ll~~ga~~ 479 (480)
||||.|+. .++.+++++|+++|+++
T Consensus 498 TaL~~Aa~~~~~~~eIv~~LLs~ga~i 524 (672)
T PHA02730 498 TAIQKSSYRRENKTKLVDLLLSYHPTL 524 (672)
T ss_pred CHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence 99999987 47999999999999986
No 63
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.74 E-value=2.1e-17 Score=172.88 Aligned_cols=126 Identities=25% Similarity=0.269 Sum_probs=116.0
Q ss_pred CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875 335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ 414 (480)
Q Consensus 335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~ 414 (480)
...+.++.|+..|+.++++.|++.|+|++..+ ..|.||||+|+..|+.++++.|+++|+++|.+
T Consensus 524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d----------------~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~ 587 (823)
T PLN03192 524 NMASNLLTVASTGNAALLEELLKAKLDPDIGD----------------SKGRTPLHIAASKGYEDCVLVLLKHACNVHIR 587 (823)
T ss_pred cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCC----------------CCCCCHHHHHHHcChHHHHHHHHhcCCCCCCc
Confidence 45688899999999999999999999998754 45999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
|..|+||||+|+..|+.+++++|+..++..+ ...|.+|||.|+..|+.++++.|+++|+|+|
T Consensus 588 d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~----~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin 649 (823)
T PLN03192 588 DANGNTALWNAISAKHHKIFRILYHFASISD----PHAAGDLLCTAAKRNDLTAMKELLKQGLNVD 649 (823)
T ss_pred CCCCCCHHHHHHHhCCHHHHHHHHhcCcccC----cccCchHHHHHHHhCCHHHHHHHHHCCCCCC
Confidence 9999999999999999999999999887665 3457899999999999999999999999986
No 64
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.73 E-value=2.6e-17 Score=122.78 Aligned_cols=87 Identities=40% Similarity=0.516 Sum_probs=80.5
Q ss_pred HHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q psy875 340 TISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGW 419 (480)
Q Consensus 340 ~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~ 419 (480)
|+.|++.|+.+++++|++.|.+++. |.||||+|+..|+.+++++|++.|++++.+|..|+
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~--------------------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 60 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL--------------------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGN 60 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS--------------------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSS
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC--------------------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCC
Confidence 6889999999999999999988764 68899999999999999999999999999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy875 420 LPLHEAANHGHTDIVQALVSAGADPND 446 (480)
Q Consensus 420 t~l~~a~~~~~~~~~~~Ll~~g~~~~~ 446 (480)
||||+|+..|+.+++++|+++|++++.
T Consensus 61 t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 61 TALHYAAENGNLEIVKLLLEHGADVNI 87 (89)
T ss_dssp BHHHHHHHTTHHHHHHHHHHTTT-TTS
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999983
No 65
>PHA02730 ankyrin-like protein; Provisional
Probab=99.73 E-value=2e-17 Score=162.32 Aligned_cols=143 Identities=11% Similarity=0.042 Sum_probs=118.7
Q ss_pred hccCCCcCC-CCcCCCchHHHHHHhhC---cHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcC-
Q psy875 322 IKRNDKDSN-LNLYNIESITISRNRLG---AQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARG- 396 (480)
Q Consensus 322 ~~~~~~~~~-~~~~~~~~~~~~a~~~~---~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~- 396 (480)
..+.+.++| ..+..+.|+||+|+..| +.++|++|+++|||++..+. .|.||||+|+..+
T Consensus 26 ~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~----------------~G~TPLh~Aa~~~~ 89 (672)
T PHA02730 26 EIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNN----------------EGLTPLGVYSKRKY 89 (672)
T ss_pred HHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCC----------------CCCChHHHHHHcCC
Confidence 334444555 56667888888888876 59999999999999997654 5999999999976
Q ss_pred -CHHHHHHHHhcCCC--CCCCCCCCChHHHHHHH--cCCHHHHHHHHH-cCCCCCCc--cCC-CCCCcHHHHHHHcCCHH
Q psy875 397 -NLTLVQSLLKQGHP--VKVQDSAGWLPLHEAAN--HGHTDIVQALVS-AGADPNDK--VQD-SAGWLPLHEAANHGHTD 467 (480)
Q Consensus 397 -~~~~~~~ll~~g~~--~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~-~g~~~~~~--~~~-~~g~tpl~~A~~~~~~~ 467 (480)
+.++|++|++.|++ ++..+..+++|||.++. +++.+++++|+. .+++++.. ..+ ..|.+|++++...++++
T Consensus 90 ~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~e 169 (672)
T PHA02730 90 VKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPE 169 (672)
T ss_pred CcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchH
Confidence 79999999999654 57778889999999888 899999999996 67888743 111 37999999999999999
Q ss_pred HHHHHHHcCCCCC
Q psy875 468 IVQALVSAGAEVS 480 (480)
Q Consensus 468 ~~~~Ll~~ga~~~ 480 (480)
++++|+++||+++
T Consensus 170 IvklLi~~g~~v~ 182 (672)
T PHA02730 170 VLLWLLKSECYST 182 (672)
T ss_pred HHHHHHHcCCccc
Confidence 9999999999974
No 66
>KOG0505|consensus
Probab=99.73 E-value=1.2e-17 Score=153.87 Aligned_cols=136 Identities=32% Similarity=0.412 Sum_probs=116.0
Q ss_pred CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHh
Q psy875 327 KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLK 406 (480)
Q Consensus 327 ~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~ 406 (480)
...+..+.++.+++|.+|.-.+.++|++|+++|+++|..++ .|+||||.|+..|+..++++|+.
T Consensus 64 a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~----------------e~wtPlhaaascg~~~i~~~li~ 127 (527)
T KOG0505|consen 64 ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDN----------------EGWTPLHAAASCGYLNIVEYLIQ 127 (527)
T ss_pred CCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccccc----------------ccCCcchhhcccccHHHHHHHHH
Confidence 44577777888888888888888888888888888887654 48888888888888888888888
Q ss_pred cCCCCCCC-----------------------------------------------------------CCCCChHHHHHHH
Q psy875 407 QGHPVKVQ-----------------------------------------------------------DSAGWLPLHEAAN 427 (480)
Q Consensus 407 ~g~~~~~~-----------------------------------------------------------~~~g~t~l~~a~~ 427 (480)
+|+++-.. +..|.|.||.|+.
T Consensus 128 ~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa 207 (527)
T KOG0505|consen 128 HGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAA 207 (527)
T ss_pred hhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHh
Confidence 77654322 2228899999999
Q ss_pred cCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 428 HGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 428 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+|..++..+|+++|.+++ +.|.+||||||.|+..|+.+++++|+++|++++
T Consensus 208 ~Gy~e~~~lLl~ag~~~~--~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d 258 (527)
T KOG0505|consen 208 NGYTEVAALLLQAGYSVN--IKDYDGWTPLHAAAHWGQEDACELLVEHGADMD 258 (527)
T ss_pred hhHHHHHHHHHHhccCcc--cccccCCCcccHHHHhhhHhHHHHHHHhhcccc
Confidence 999999999999999999 669999999999999999999999999999874
No 67
>KOG4177|consensus
Probab=99.73 E-value=1.7e-17 Score=169.34 Aligned_cols=170 Identities=28% Similarity=0.401 Sum_probs=140.4
Q ss_pred hhhccCCccchhhhccCCCc-----------CCCCcCCCchHHHHHHhhC-cHHHHHHHHhcCCchhhhhhhhccc----
Q psy875 309 RTNRKRAPRSHFLIKRNDKD-----------SNLNLYNIESITISRNRLG-AQEVRKLLSLLNADLLVHLNLSATL---- 372 (480)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~a~~~~-~~~~v~~L~~~g~~~~~~~~~~~~~---- 372 (480)
.....|-||+|.+...+..+ .+.....+.+++|.|+..| ..++...++..|++++.....+.+.
T Consensus 402 ~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhla 481 (1143)
T KOG4177|consen 402 SAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLA 481 (1143)
T ss_pred cCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhh
Confidence 34456778888886665543 3455666788999988888 8889999999999998875443331
Q ss_pred -------------cCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH
Q psy875 373 -------------ETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS 439 (480)
Q Consensus 373 -------------~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~ 439 (480)
......+...+.+.+++|.+...+...+++.++++|++++.++..|.||||.||..|+.++|++|++
T Consensus 482 aq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe 561 (1143)
T KOG4177|consen 482 AQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLE 561 (1143)
T ss_pred hccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhh
Confidence 2222334445668888888888888899999999999999999999999999999999999999999
Q ss_pred cCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 440 ~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+|++++ ..++.|+||||.|+..|+.+|+.+|+++||+||
T Consensus 562 ~gAdv~--ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vn 600 (1143)
T KOG4177|consen 562 HGADVN--AKDKLGYTPLHQAAQQGHNDIAELLLKHGASVN 600 (1143)
T ss_pred CCcccc--ccCCCCCChhhHHHHcChHHHHHHHHHcCCCCC
Confidence 999999 558999999999999999999999999999986
No 68
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.72 E-value=2.2e-17 Score=136.94 Aligned_cols=126 Identities=20% Similarity=0.131 Sum_probs=106.6
Q ss_pred hhhHhhhccCCccchhhhccCCC-cC--------C-------CCcCCCchHHHHHHhhCcH---HHHHHHHhcCCchhhh
Q psy875 305 DQDKRTNRKRAPRSHFLIKRNDK-DS--------N-------LNLYNIESITISRNRLGAQ---EVRKLLSLLNADLLVH 365 (480)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~-~~--------~-------~~~~~~~~~~~~a~~~~~~---~~v~~L~~~g~~~~~~ 365 (480)
.+....+..|.||||+++..+.. +. + ..+..+.+++|.|+..|+. +++++|++.|++++..
T Consensus 8 ~~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~ 87 (154)
T PHA02736 8 IFASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK 87 (154)
T ss_pred hHHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence 34445667799999999999862 11 1 1255788999999999987 4688999999999876
Q ss_pred hhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 366 LNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ-GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444 (480)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~ 444 (480)
+. ..|.||||+|+..++.+++++|+.+ |++++.+|..|+||||+|+..|+.+++++|+.+|+++
T Consensus 88 ~~---------------~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~ 152 (154)
T PHA02736 88 ER---------------VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC 152 (154)
T ss_pred CC---------------CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 42 2499999999999999999999985 9999999999999999999999999999999999887
Q ss_pred C
Q psy875 445 N 445 (480)
Q Consensus 445 ~ 445 (480)
+
T Consensus 153 ~ 153 (154)
T PHA02736 153 K 153 (154)
T ss_pred C
Confidence 5
No 69
>KOG0514|consensus
Probab=99.71 E-value=1.8e-17 Score=144.95 Aligned_cols=128 Identities=32% Similarity=0.374 Sum_probs=112.3
Q ss_pred CCCCcCCCchHHHHHHhhCcHHHHHHHHhcC-CchhhhhhhhccccCCCccccCCCCCchHHHHHHHc-----CCHHHHH
Q psy875 329 SNLNLYNIESITISRNRLGAQEVRKLLSLLN-ADLLVHLNLSATLETPTTSLLEKPRGETALHVAAAR-----GNLTLVQ 402 (480)
Q Consensus 329 ~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~-----~~~~~~~ 402 (480)
+|+-+.++.+.||+++..+|+++|+.|++.| ++++..+.- |.||+++++.. .+..+|.
T Consensus 261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrA----------------GYtpiMLaALA~lk~~~d~~vV~ 324 (452)
T KOG0514|consen 261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRA----------------GYTPVMLAALAKLKQPADRTVVE 324 (452)
T ss_pred hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccc----------------cccHHHHHHHHhhcchhhHHHHH
Confidence 4666778999999999999999999999999 577665442 99999998874 3567888
Q ss_pred HHHhcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy875 403 SLLKQGHPVKVQD-SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475 (480)
Q Consensus 403 ~ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 475 (480)
.|+.-| ++|.+- ..|.|+|++|+.+|..++|+.|+..|+|+| ++|.+|.|+|++|+.+||.+|+++||..
T Consensus 325 ~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN--iQDdDGSTALMCA~EHGhkEivklLLA~ 395 (452)
T KOG0514|consen 325 RLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVN--IQDDDGSTALMCAAEHGHKEIVKLLLAV 395 (452)
T ss_pred HHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCc--cccCCccHHHhhhhhhChHHHHHHHhcc
Confidence 888775 788775 579999999999999999999999999999 7799999999999999999999999863
No 70
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=133.49 Aligned_cols=113 Identities=20% Similarity=0.121 Sum_probs=97.5
Q ss_pred CCCcCCCCcCCCchHHHHHHhhCcHHH---HHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHH
Q psy875 325 NDKDSNLNLYNIESITISRNRLGAQEV---RKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLV 401 (480)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~a~~~~~~~~---v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~ 401 (480)
.+.+++..+..+.+++|+|+..|+.++ +++|+++|++++.... ..|.||||+|+..++.+++
T Consensus 46 ~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~---------------~~g~TpLh~A~~~g~~~iv 110 (166)
T PHA02743 46 DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINAREL---------------GTGNTLLHIAASTKNYELA 110 (166)
T ss_pred cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCC---------------CCCCcHHHHHHHhCCHHHH
Confidence 334456667788999999999988654 7999999999987542 2499999999999999999
Q ss_pred HHHHh-cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCC
Q psy875 402 QSLLK-QGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGW 454 (480)
Q Consensus 402 ~~ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~ 454 (480)
++|+. .|++++.+|..|+||||+|+..++.+++++|+.+|++++.+ +..|.
T Consensus 111 ~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~--~~~~~ 162 (166)
T PHA02743 111 EWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDP--LSIGL 162 (166)
T ss_pred HHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc--ccCCc
Confidence 99995 79999999999999999999999999999999999999944 66554
No 71
>PHA02792 ankyrin-like protein; Provisional
Probab=99.70 E-value=2.1e-16 Score=153.60 Aligned_cols=129 Identities=11% Similarity=-0.003 Sum_probs=109.7
Q ss_pred CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCH---HHHHHHHhcCCCC
Q psy875 335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNL---TLVQSLLKQGHPV 411 (480)
Q Consensus 335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~---~~~~~ll~~g~~~ 411 (480)
.....++.|+..|+.++|++|+++|+|++..+.. ..+.||||+|+..... +++++++.+|+++
T Consensus 338 ~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~--------------g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI 403 (631)
T PHA02792 338 KHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDN--------------IINIMPLFPTLSIHESDVLSILKLCKPYIDDI 403 (631)
T ss_pred CcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCC--------------CCChhHHHHHHHhccHhHHHHHHHHHhcCCcc
Confidence 3455678889999999999999999999876431 1256999998776654 4688899999999
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHH---c-------CCHHHHHHHHHcCCCC
Q psy875 412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAAN---H-------GHTDIVQALVSAGAEV 479 (480)
Q Consensus 412 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~---~-------~~~~~~~~Ll~~ga~~ 479 (480)
|.+|..|+||||+|+..++.+++++|+++|++++ ..|..|.||||+|+. . ...++++.|+++|+++
T Consensus 404 N~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN--~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i 479 (631)
T PHA02792 404 NKIDKHGRSILYYCIESHSVSLVEWLIDNGADIN--ITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI 479 (631)
T ss_pred ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999999999 569999999999975 2 2356799999999876
No 72
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.69 E-value=7e-15 Score=142.37 Aligned_cols=206 Identities=14% Similarity=0.175 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF-PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
...++..+|.++...|++++|+..+++++.. .... .....++..+|.+|... |++++|+.+|+++++.. +.
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~-g~~~~A~~~~~~~l~~~------~~ 139 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKA-GLLDRAEELFLQLVDEG------DF 139 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCC------cc
Confidence 3456677777777777777777777766554 1111 11234566667774433 77777777777766541 11
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc---HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD---LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 191 (480)
...++..++.++...|++++|++.+++.+...+.+. ....+..+|.++...|++++|+.+|+++++.. +....
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~ 215 (389)
T PRK11788 140 AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD----PQCVR 215 (389)
T ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC----cCCHH
Confidence 234566677777777777777777776665443321 23345667777777777777777777777652 22344
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
++..+|.++...|+ +++|+..+++++.. ++.....++..++.+|...|++++|..+++++.+
T Consensus 216 ~~~~la~~~~~~g~-~~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 216 ASILLGDLALAQGD-YAAAIEALERVEEQ-----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56667777777777 77777777776654 1222334556667777777777777777766654
No 73
>KOG1155|consensus
Probab=99.69 E-value=4.8e-15 Score=134.46 Aligned_cols=205 Identities=18% Similarity=0.241 Sum_probs=169.1
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHh----------------hccCch--------------HHHHHHHHHHHHHHh
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLH----------------ARNFPE--------------AVKTLGEIGDLYELQ 88 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~----------------~~~~~~--------------~~~~~~~lg~~y~~~ 88 (480)
+-...|.+.+.+.+|++|+..|+...+.- .++... ...++.-||+.|...
T Consensus 264 i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr 343 (559)
T KOG1155|consen 264 IKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLR 343 (559)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHH
Confidence 44567888999999999999999987651 001000 111223347775555
Q ss_pred hccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccH
Q psy875 89 EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQY 168 (480)
Q Consensus 89 ~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~ 168 (480)
++.++|+.||++|+++.+. ...++..+|.-|..+++...|++.|++|+.+.|.. ..+++.||+.|.-++-.
T Consensus 344 -~eHEKAv~YFkRALkLNp~------~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D--yRAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 344 -SEHEKAVMYFKRALKLNPK------YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD--YRAWYGLGQAYEIMKMH 414 (559)
T ss_pred -HhHHHHHHHHHHHHhcCcc------hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh--HHHHhhhhHHHHHhcch
Confidence 9999999999999998543 46788899999999999999999999999888654 47899999999999999
Q ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChH
Q psy875 169 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFT 248 (480)
Q Consensus 169 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 248 (480)
.=|+-||++|.+. .|.-...|..||.+|.+.++ .++|+.+|..|+... .....++..||++|.++++.+
T Consensus 415 ~YaLyYfqkA~~~----kPnDsRlw~aLG~CY~kl~~-~~eAiKCykrai~~~------dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 415 FYALYYFQKALEL----KPNDSRLWVALGECYEKLNR-LEEAIKCYKRAILLG------DTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHHHHHHHHhc----CCCchHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcc------ccchHHHHHHHHHHHHHHhHH
Confidence 9999999999999 44446789999999999999 999999999999873 336678999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy875 249 ELEQIKTELKSLEEK 263 (480)
Q Consensus 249 ~A~~~~~~~~~l~~~ 263 (480)
+|..+++++.+....
T Consensus 484 eAa~~yek~v~~~~~ 498 (559)
T KOG1155|consen 484 EAAQYYEKYVEVSEL 498 (559)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999886533
No 74
>KOG0512|consensus
Probab=99.69 E-value=1.9e-16 Score=123.97 Aligned_cols=132 Identities=20% Similarity=0.198 Sum_probs=113.5
Q ss_pred CccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHH
Q psy875 315 APRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAA 394 (480)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~ 394 (480)
-+....+++.....+|..+.++-++||-|+.+|+.+||+.|+..|++++.+.+ .|+||||.||.
T Consensus 76 l~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~----------------~GWTPLhSAck 139 (228)
T KOG0512|consen 76 LTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTN----------------EGWTPLHSACK 139 (228)
T ss_pred HHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccc----------------cCccchhhhhc
Confidence 35566777778888999999999999999999999999999999999998755 39999999999
Q ss_pred cCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCH-HHHHHHHH-cCCCCCCccCCCCCCcHHHHHHHcC
Q psy875 395 RGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHT-DIVQALVS-AGADPNDKVQDSAGWLPLHEAANHG 464 (480)
Q Consensus 395 ~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~-~~~~~Ll~-~g~~~~~~~~~~~g~tpl~~A~~~~ 464 (480)
.++.+++-.|+.+|+|+|......+||||.||..... ..+.+|+. .+.++- ..+..+.||+.+|.+.+
T Consensus 140 WnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg--~~nn~eeta~~iARRT~ 209 (228)
T KOG0512|consen 140 WNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG--LKNNLEETAFDIARRTS 209 (228)
T ss_pred ccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChh--hhcCccchHHHHHHHhh
Confidence 9999999999999999999998999999999977664 44555554 455555 55788999999999875
No 75
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.69 E-value=1.4e-14 Score=140.25 Aligned_cols=208 Identities=15% Similarity=0.142 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
+...+.+|..+...|++++|+..|+++++. .+....++..+|.+|... |++++|+..+++++.... .......
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~--~~~~~~~ 107 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKV----DPETVELHLALGNLFRRR-GEVDRAIRIHQNLLSRPD--LTREQRL 107 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHc-CcHHHHHHHHHHHhcCCC--CCHHHHH
Confidence 445677789999999999999999999998 556677888999995555 999999999999886321 1223345
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCc-HHHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF-PEAVKTLGE 195 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~ 195 (480)
.++..+|.+|...|++++|+.+|++++... +....++..++.++...|++++|++.+++.++..+.+. ......+..
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 678999999999999999999999998654 34457889999999999999999999999887644322 234556788
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
+|.++...|+ +++|+.+|+++++.. +....++..++.++.+.|++++|.++++++...
T Consensus 186 la~~~~~~~~-~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 186 LAQQALARGD-LDAARALLKKALAAD------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHhHC------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999 999999999998762 223457788999999999999999999998764
No 76
>PHA02741 hypothetical protein; Provisional
Probab=99.68 E-value=2.8e-16 Score=132.12 Aligned_cols=97 Identities=28% Similarity=0.434 Sum_probs=86.9
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHh------cCCCCCCCCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCCccCCC
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLK------QGHPVKVQDSAGWLPLHEAANHGH----TDIVQALVSAGADPNDKVQDS 451 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~------~g~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~~~ 451 (480)
+..|.||||+|+..|+.++++.|+. .|++++.+|..|+||||+|+..|+ .+++++|+.+|++++ .++.
T Consensus 18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin--~~~~ 95 (169)
T PHA02741 18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN--AQEM 95 (169)
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC--CCCc
Confidence 3459999999999999999998853 368899999999999999999999 589999999999999 4474
Q ss_pred -CCCcHHHHHHHcCCHHHHHHHHH-cCCCCC
Q psy875 452 -AGWLPLHEAANHGHTDIVQALVS-AGAEVS 480 (480)
Q Consensus 452 -~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~ 480 (480)
.|.||||+|+..++.+++++|+. .|++++
T Consensus 96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~ 126 (169)
T PHA02741 96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLH 126 (169)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence 89999999999999999999997 598874
No 77
>KOG0195|consensus
Probab=99.68 E-value=1.3e-16 Score=135.27 Aligned_cols=101 Identities=40% Similarity=0.527 Sum_probs=94.8
Q ss_pred cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHH
Q psy875 378 SLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPL 457 (480)
Q Consensus 378 ~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl 457 (480)
.+..|..|.+|||+||..|+..+++.|+..|+.+|..+....||||+|+.+||.++|+.|++..+|+| ..+..|.|||
T Consensus 27 ln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvn--avnehgntpl 104 (448)
T KOG0195|consen 27 LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVN--AVNEHGNTPL 104 (448)
T ss_pred cccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccc--hhhccCCCch
Confidence 34456679999999999999999999999999999999999999999999999999999999999999 6699999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCC
Q psy875 458 HEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 458 ~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
|+||..|...+++-|+..||-++
T Consensus 105 hyacfwgydqiaedli~~ga~v~ 127 (448)
T KOG0195|consen 105 HYACFWGYDQIAEDLISCGAAVN 127 (448)
T ss_pred hhhhhhcHHHHHHHHHhccceee
Confidence 99999999999999999999764
No 78
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.67 E-value=4.9e-16 Score=139.94 Aligned_cols=135 Identities=18% Similarity=0.065 Sum_probs=111.2
Q ss_pred chhhhccCCCcCCCC----cCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHH
Q psy875 318 SHFLIKRNDKDSNLN----LYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAA 393 (480)
Q Consensus 318 ~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~ 393 (480)
+.-.+...|.++|.. +..+.+|+|+|+..|+.+++++|+++|+|++.... ..|.||||+|+
T Consensus 48 ivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~---------------~~g~TpLh~Aa 112 (300)
T PHA02884 48 IIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAE---------------EAKITPLYISV 112 (300)
T ss_pred HHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccC---------------CCCCCHHHHHH
Confidence 333344566677765 35789999999999999999999999999997432 23999999999
Q ss_pred HcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy875 394 ARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473 (480)
Q Consensus 394 ~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll 473 (480)
..++.+++++|+..|++++.+|..|+||||+|+..++..++..+. |... +..+.+|++++ ++.+++++|+
T Consensus 113 ~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~---~n~ei~~~Li 182 (300)
T PHA02884 113 LHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNEI-----SNFYKHPKKIL---INFDILKILV 182 (300)
T ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCcc-----cccccChhhhh---ccHHHHHHHH
Confidence 999999999999999999999999999999999999888875554 3222 45577898875 4689999999
Q ss_pred HcCC
Q psy875 474 SAGA 477 (480)
Q Consensus 474 ~~ga 477 (480)
++++
T Consensus 183 sh~v 186 (300)
T PHA02884 183 SHFI 186 (300)
T ss_pred HHHH
Confidence 8876
No 79
>PHA02792 ankyrin-like protein; Provisional
Probab=99.66 E-value=3.4e-16 Score=152.14 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=118.0
Q ss_pred ccCCccchhhhccCCCcCC-------------CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcc
Q psy875 312 RKRAPRSHFLIKRNDKDSN-------------LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTS 378 (480)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~ 378 (480)
.+|.||+|.........++ .+..+...+...|+.+|+.|+|++|+++|||+|...+
T Consensus 35 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n----------- 103 (631)
T PHA02792 35 YDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKN----------- 103 (631)
T ss_pred cCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccC-----------
Confidence 3566888877544432221 3334444666779999999999999999999997654
Q ss_pred ccCCCCCchHHHHHHH-cCCHHHHHHHHhcCCCCC------------------------------------CCCCCCChH
Q psy875 379 LLEKPRGETALHVAAA-RGNLTLVQSLLKQGHPVK------------------------------------VQDSAGWLP 421 (480)
Q Consensus 379 ~~~~~~g~~~l~~a~~-~~~~~~~~~ll~~g~~~~------------------------------------~~~~~g~t~ 421 (480)
.|.+|+|+|+. .++.+++++|+++|+++. ..|..|.||
T Consensus 104 -----~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~ 178 (631)
T PHA02792 104 -----GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTV 178 (631)
T ss_pred -----CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCch
Confidence 37899999976 699999999999998743 233459999
Q ss_pred HHHHHHcC-------CHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHc
Q psy875 422 LHEAANHG-------HTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG--HTDIVQALVSA 475 (480)
Q Consensus 422 l~~a~~~~-------~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~--~~~~~~~Ll~~ 475 (480)
||+++..+ +.++++.|+.+|++++ ..|..|.||||+|+... ..+++++|+..
T Consensus 179 L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~--~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~ 239 (631)
T PHA02792 179 LYYYIITRSQDGYATSLDVINYLISHEKEMR--YYTYREHTTLYYYVDKCDIKREIFDALFDS 239 (631)
T ss_pred HHHHHhhCCcccccCCHHHHHHHHhCCCCcC--ccCCCCChHHHHHHHcccchHHHHHHHHhc
Confidence 99999999 8999999999999999 45889999999999999 78999999873
No 80
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.66 E-value=1.8e-16 Score=165.08 Aligned_cols=141 Identities=18% Similarity=0.106 Sum_probs=112.1
Q ss_pred CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875 334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV 413 (480)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~ 413 (480)
..+.||+|.|+..|+.++|++|+++|++++.............. .....|.||||.|+..|+.+++++|+++|+|+|.
T Consensus 126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~--~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~ 203 (743)
T TIGR00870 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGV--DSFYHGESPLNAAACLGSPSIVALLSEDPADILT 203 (743)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCC--CcccccccHHHHHHHhCCHHHHHHHhcCCcchhh
Confidence 45789999999999999999999999999965432111111110 0112489999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHcC---------CHHHHHHHHHcCCCCCC-----ccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy875 414 QDSAGWLPLHEAANHG---------HTDIVQALVSAGADPND-----KVQDSAGWLPLHEAANHGHTDIVQALVSAG 476 (480)
Q Consensus 414 ~~~~g~t~l~~a~~~~---------~~~~~~~Ll~~g~~~~~-----~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g 476 (480)
.|..|+||||+|+..+ ...+.+++++.+..+.. .+.|.+|.||||+|+..|+.+++++|++.+
T Consensus 204 ~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~ 280 (743)
T TIGR00870 204 ADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK 280 (743)
T ss_pred HhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence 9999999999999987 23466667766555421 155889999999999999999999999854
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.66 E-value=1.2e-14 Score=133.88 Aligned_cols=205 Identities=12% Similarity=0.048 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
...+..++.+|.+|...|++++|+..|++++++ .|....+|+.+|.+| ...|++++|+..|++|+++.+..
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~-~~~g~~~~A~~~~~~Al~l~P~~---- 131 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALAL----RPDMADAYNYLGIYL-TQAGNFDAAYEAFDSVLELDPTY---- 131 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCC----
Confidence 455788999999999999999999999999999 667788999999994 55599999999999999885432
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL 193 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 193 (480)
..++.++|.++...|++++|+..|++++...+.......+ ..+....+++++|+..+.+++..... + .+
T Consensus 132 --~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~--~----~~ 200 (296)
T PRK11189 132 --NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW---LYLAESKLDPKQAKENLKQRYEKLDK--E----QW 200 (296)
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHccCCHHHHHHHHHHHHhhCCc--c----cc
Confidence 5678999999999999999999999999887764422222 23345678999999999887644211 1 11
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 194 GEIGDLYELQEKPFELVVSTHEKALDLARQN-KDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
..+.++...|+ +.++ ..+..+....+.. ...+....++..+|.++.++|++++|..+++++.++.
T Consensus 201 -~~~~~~~~lg~-~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 201 -GWNIVEFYLGK-ISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -HHHHHHHHccC-CCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 13555666777 6544 2333333211110 1123456789999999999999999999999988654
No 82
>KOG1173|consensus
Probab=99.65 E-value=3.6e-15 Score=138.60 Aligned_cols=212 Identities=18% Similarity=0.142 Sum_probs=181.9
Q ss_pred hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875 30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN 109 (480)
Q Consensus 30 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~ 109 (480)
.++++..+..|+..|..|...|.+.+|.++|.||-.+ .+..+.+|...|..|..+ +..++|+..|..|-++.+..
T Consensus 305 V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l----D~~fgpaWl~fghsfa~e-~EhdQAmaaY~tAarl~~G~ 379 (611)
T KOG1173|consen 305 VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL----DPTFGPAWLAFGHSFAGE-GEHDQAMAAYFTAARLMPGC 379 (611)
T ss_pred HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc----CccccHHHHHHhHHhhhc-chHHHHHHHHHHHHHhccCC
Confidence 3455667778999999999999999999999999998 777888999999996666 99999999999999998765
Q ss_pred CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC---c
Q psy875 110 KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN---F 186 (480)
Q Consensus 110 ~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~---~ 186 (480)
.-+ +.-+|.-|..+++++.|.++|.+++.+.|... .++..+|.+.+..+.|.+|..+|++++...+.. .
T Consensus 380 hlP------~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp--lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 380 HLP------SLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP--LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred cch------HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc--hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 433 23578889999999999999999999987655 668899999999999999999999999665542 2
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
+.-...+.+||-++.++++ |++|+.++++++.+ .+.-..++..+|-+|..+|+++.|..++-++.-+.
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~-~~eAI~~~q~aL~l------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNK-YEEAIDYYQKALLL------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred cchhHHHHhHHHHHHHHhh-HHHHHHHHHHHHHc------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 2345678999999999999 99999999999988 44456778899999999999999999999887653
No 83
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.65 E-value=4.4e-15 Score=118.86 Aligned_cols=122 Identities=39% Similarity=0.527 Sum_probs=110.3
Q ss_pred CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875 334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV 413 (480)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~ 413 (480)
..+.++++.|+..++.+++++|++.|++.+.. +..|.+|+|.|+..++.++++.|+..|++++.
T Consensus 5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~----------------~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~ 68 (126)
T cd00204 5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAK----------------DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68 (126)
T ss_pred cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcc----------------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 45668888899999999999999999887443 33599999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy875 414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473 (480)
Q Consensus 414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll 473 (480)
.+..|.||+|+|+..++.+++++|+.+|.+++ ..+..|.||+++|...++.+++++|+
T Consensus 69 ~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 69 RDKDGNTPLHLAARNGNLDVVKLLLKHGADVN--ARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 99999999999999999999999999998888 45889999999999999999999874
No 84
>KOG4214|consensus
Probab=99.64 E-value=1.2e-15 Score=106.19 Aligned_cols=102 Identities=25% Similarity=0.292 Sum_probs=91.7
Q ss_pred HHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q psy875 339 ITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAG 418 (480)
Q Consensus 339 ~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g 418 (480)
-..|+..+|.++-|+-.+..|.++|.... |++|||+|+-.|+.+++++|+..|++++.+|..|
T Consensus 5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~g-----------------gR~plhyAAD~GQl~ilefli~iGA~i~~kDKyg 67 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSVNEGLNVNEIYG-----------------GRTPLHYAADYGQLSILEFLISIGANIQDKDKYG 67 (117)
T ss_pred hHhhhhccCcHHHHHHHHHccccHHHHhC-----------------CcccchHhhhcchHHHHHHHHHhccccCCccccC
Confidence 46789999999999999999988887764 9999999999999999999999999999999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875 419 WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHE 459 (480)
Q Consensus 419 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~ 459 (480)
.|||-.|+..||.+||++|+..|++-..+ ..+|.+.+..
T Consensus 68 ITPLLsAvwEGH~~cVklLL~~GAdrt~~--~PdG~~~~ea 106 (117)
T KOG4214|consen 68 ITPLLSAVWEGHRDCVKLLLQNGADRTIH--APDGTALIEA 106 (117)
T ss_pred CcHHHHHHHHhhHHHHHHHHHcCccccee--CCCchhHHhh
Confidence 99999999999999999999999999855 4457666543
No 85
>KOG0547|consensus
Probab=99.64 E-value=2.3e-14 Score=130.88 Aligned_cols=207 Identities=18% Similarity=0.186 Sum_probs=168.7
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT 117 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~ 117 (480)
..|..+|.+|....+-++..+.|.+|..+ .+....+|+..|++++. +++|++|+.-|+||+.+.+ ..+.
T Consensus 361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~fl-L~q~e~A~aDF~Kai~L~p------e~~~ 429 (606)
T KOG0547|consen 361 SLYIKRAAAYADENQSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFL-LQQYEEAIADFQKAISLDP------ENAY 429 (606)
T ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHH-HHHHHHHHHHHHHHhhcCh------hhhH
Confidence 34888999999999999999999999999 66667788899999544 4999999999999998843 4477
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHH--HHHHHHH
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE--AVKTLGE 195 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~ 195 (480)
.|..++-+.+++++++++...|+.+.... |....+|...|.++.++++|++|+++|++++++-+..+.. .+..+.+
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 88899999999999999999999988665 4556788899999999999999999999999985542111 1222333
Q ss_pred HHHHHHHh-CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q psy875 196 IGDLYELQ-EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKL 264 (480)
Q Consensus 196 l~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~ 264 (480)
-|.+..+- ++ +..|+..+++|+++ ++.-..++..||.+-.++|+.++|+++++++..+..+.
T Consensus 508 Ka~l~~qwk~d-~~~a~~Ll~KA~e~------Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 508 KALLVLQWKED-INQAENLLRKAIEL------DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred hhHhhhchhhh-HHHHHHHHHHHHcc------CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 33333332 45 99999999999988 66677889999999999999999999999999988764
No 86
>KOG3676|consensus
Probab=99.64 E-value=1.3e-15 Score=147.61 Aligned_cols=165 Identities=22% Similarity=0.185 Sum_probs=135.5
Q ss_pred hccCCccchhhhccCCCcCC-------------------CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhcc
Q psy875 311 NRKRAPRSHFLIKRNDKDSN-------------------LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSAT 371 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~ 371 (480)
-.-|+|.||.++.......| ....-++++||.|+.+.+.++|++|++.|||++.+..-...
T Consensus 140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF 219 (782)
T KOG3676|consen 140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFF 219 (782)
T ss_pred cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcccc
Confidence 34589999999886444332 23567899999999999999999999999999987543222
Q ss_pred cc-CCCccc-cCC-----CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 372 LE-TPTTSL-LEK-----PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444 (480)
Q Consensus 372 ~~-~~~~~~-~~~-----~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~ 444 (480)
.. +...++ ..| --|+.||-+||.-++.+++++|+++|+|++.+|..|+|.||..+..-..++-++++.+|++.
T Consensus 220 ~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~ 299 (782)
T KOG3676|consen 220 CPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANA 299 (782)
T ss_pred CcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 21 221220 000 01899999999999999999999999999999999999999999998899999999999993
Q ss_pred CCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy875 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475 (480)
Q Consensus 445 ~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 475 (480)
...++|+.|-|||..|++.|..+|.+.+++.
T Consensus 300 l~~v~N~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 300 LEHVRNNQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred cccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence 3337799999999999999999999999987
No 87
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.62 E-value=7.2e-14 Score=142.53 Aligned_cols=64 Identities=11% Similarity=-0.043 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKAL 103 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl 103 (480)
.-..++..+|.++...|++++|+..|++++++ .+....++..+|.+ +...|++++|+..+++++
T Consensus 108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l----~P~~~~a~~~la~~-l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLA----FSGNSQIFALHLRT-LVLMDKELQAISLARTQA 171 (656)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHH-HHHCCChHHHHHHHHHHH
Confidence 33556777777777777777777777777776 34444445555555 333355665555555443
No 88
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.62 E-value=6.9e-14 Score=146.18 Aligned_cols=198 Identities=12% Similarity=0.026 Sum_probs=159.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV 118 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~ 118 (480)
....+|.++...|++++|+..|+++... .+. ...+..+|.+ ....|++++|+.++++++...+. . ...
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~----~p~-~~a~~~la~a-ll~~Gd~~eA~~~l~qAL~l~P~---~---~~l 578 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH----DMS-NEDLLAAANT-AQAAGNGAARDRWLQQAEQRGLG---D---NAL 578 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc----CCC-cHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCc---c---HHH
Confidence 3566677778899999999999997654 222 1235677888 45559999999999999876421 1 233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875 119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD 198 (480)
Q Consensus 119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~ 198 (480)
+..++......|++++|+..|++++...|. ...+.++|.++.++|++++|+.+|++++.+ .|....++.++|.
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~---~~a~~~LA~~l~~lG~~deA~~~l~~AL~l----~Pd~~~a~~nLG~ 651 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLNIAPS---ANAYVARATIYRQRHNVPAAVSDLRAALEL----EPNNSNYQAALGY 651 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHH
Confidence 445666666779999999999999987763 578899999999999999999999999998 4555678999999
Q ss_pred HHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875 199 LYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE 262 (480)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~ 262 (480)
++...|+ +++|+..|++++++ .|....++.++|.++..+|++++|+.+++++.++..
T Consensus 652 aL~~~G~-~eeAi~~l~~AL~l------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 652 ALWDSGD-IAQSREMLERAHKG------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHCCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999 99999999999887 445567888999999999999999999999987663
No 89
>KOG1173|consensus
Probab=99.61 E-value=3.2e-14 Score=132.38 Aligned_cols=201 Identities=16% Similarity=0.216 Sum_probs=166.7
Q ss_pred hhHHHhhccchhhhhhhHHHH-hhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHH
Q psy875 3 FKIALSRGIGLSDSLDSACTE-LHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 81 (480)
Q Consensus 3 ~~~~~~~g~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 81 (480)
+-.|+..|+. |..++....+ -++++.....+..+.+|...|..+...|..++|+.+|..|-+++ +.-..-...+
T Consensus 312 a~sW~aVg~Y-Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~----~G~hlP~LYl 386 (611)
T KOG1173|consen 312 ALSWFAVGCY-YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM----PGCHLPSLYL 386 (611)
T ss_pred CcchhhHHHH-HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc----cCCcchHHHH
Confidence 3458888888 7777764433 56666777778889999999999999999999999999999994 3322333566
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-----ccHHHHHH
Q psy875 82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-----KDLASCYI 156 (480)
Q Consensus 82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~~~ 156 (480)
|.- +...++++.|.++|.+|+.+++.. ..++..+|.+.+..+.|.+|..+|++++...+. +.+.....
T Consensus 387 gme-y~~t~n~kLAe~Ff~~A~ai~P~D------plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 387 GME-YMRTNNLKLAEKFFKQALAIAPSD------PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred HHH-HHHhccHHHHHHHHHHHHhcCCCc------chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 777 555599999999999999997643 346789999999999999999999988832221 34567899
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 157 ~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
|||.+|.+++.|++|+.+|++++.+ .+..+.++..+|.+|..+|+ ++.|+++|.+|+.+
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l----~~k~~~~~asig~iy~llgn-ld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLL----SPKDASTHASIGYIYHLLGN-LDKAIDHFHKALAL 518 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHc----CCCchhHHHHHHHHHHHhcC-hHHHHHHHHHHHhc
Confidence 9999999999999999999999999 45557889999999999999 99999999999987
No 90
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.60 E-value=1.4e-13 Score=149.99 Aligned_cols=205 Identities=18% Similarity=0.181 Sum_probs=164.0
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH-------
Q psy875 42 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL------- 114 (480)
Q Consensus 42 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~------- 114 (480)
.+|..+...|++++|+..|+++++. .+....++..+|.+|... |++++|+.+|+++++..+.......
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~----~P~~~~a~~~Lg~~~~~~-g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRA----NPKDSEALGALGQAYSQQ-GDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 4588999999999999999999998 566678889999995555 9999999999999988765433211
Q ss_pred -HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH----
Q psy875 115 -IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA---- 189 (480)
Q Consensus 115 -~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~---- 189 (480)
.......+|.++...|++++|+.+|++++...+. ...++..+|.+|..+|++++|+.+|++++++.+.+....
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT--DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 1123446789999999999999999999987754 346788999999999999999999999998744422110
Q ss_pred ----------------------------------HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy875 190 ----------------------------------VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMR 235 (480)
Q Consensus 190 ----------------------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 235 (480)
...+..+|.++...|+ +++|+..|++++++ .+....++.
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~-~~eA~~~~~~Al~~------~P~~~~~~~ 499 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK-WAQAAELQRQRLAL------DPGSVWLTY 499 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC-HHHHHHHHHHHHHh------CCCCHHHHH
Confidence 1123456777888899 99999999999877 233345778
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 236 SMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 236 ~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
.++.+|..+|++++|...++++.++
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999998764
No 91
>KOG4214|consensus
Probab=99.60 E-value=3.4e-15 Score=104.00 Aligned_cols=90 Identities=32% Similarity=0.468 Sum_probs=83.2
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCH
Q psy875 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT 466 (480)
Q Consensus 387 ~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~ 466 (480)
--+.|++.+|.++-|+..+..|.++|.. ..|++|||+|+-.|..+++++|+..|++++. .|+.|.|||-.|+..||.
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~--kDKygITPLLsAvwEGH~ 80 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQD--KDKYGITPLLSAVWEGHR 80 (117)
T ss_pred hhHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCC--ccccCCcHHHHHHHHhhH
Confidence 4468999999999999999999888765 4899999999999999999999999999995 499999999999999999
Q ss_pred HHHHHHHHcCCCC
Q psy875 467 DIVQALVSAGAEV 479 (480)
Q Consensus 467 ~~~~~Ll~~ga~~ 479 (480)
+||++|+++||+-
T Consensus 81 ~cVklLL~~GAdr 93 (117)
T KOG4214|consen 81 DCVKLLLQNGADR 93 (117)
T ss_pred HHHHHHHHcCccc
Confidence 9999999999985
No 92
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.60 E-value=2.9e-13 Score=138.09 Aligned_cols=207 Identities=11% Similarity=0.015 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCch-------------------------------HHHHHHHHHHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE-------------------------------AVKTLGEIGDL 84 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~lg~~ 84 (480)
...++..+|.++...|++++|+..+.+++.. ..+.+. .......++.+
T Consensus 143 ~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 143 NSQIFALHLRTLVLMDKELQAISLARTQAQE-VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 3445666677777777777777766665544 111111 01111233445
Q ss_pred HHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHH----HHHHHHHHhcccccccHHHHHHHHHH
Q psy875 85 YELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDS----ACSELHTVLSSDLCKDLASCYISLAQ 160 (480)
Q Consensus 85 y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~----A~~~~~~~l~~~~~~~~~~~~~~la~ 160 (480)
+...|++++|+..+++++...+. ...++.++|.+|...|++++ |+..|++++...| ....++.++|.
T Consensus 222 -l~~~g~~~eA~~~~~~al~~~p~------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P--~~~~a~~~lg~ 292 (656)
T PRK15174 222 -LCAVGKYQEAIQTGESALARGLD------GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS--DNVRIVTLYAD 292 (656)
T ss_pred -HHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC--CCHHHHHHHHH
Confidence 33347777777777777665321 24566789999999999985 7999999987764 45578889999
Q ss_pred HHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy875 161 TYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKL 240 (480)
Q Consensus 161 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 240 (480)
++..+|++++|+.++++++++ .|....++..+|.++...|+ +++|+..|++++.. .+........++.+
T Consensus 293 ~l~~~g~~~eA~~~l~~al~l----~P~~~~a~~~La~~l~~~G~-~~eA~~~l~~al~~------~P~~~~~~~~~a~a 361 (656)
T PRK15174 293 ALIRTGQNEKAIPLLQQSLAT----HPDLPYVRAMYARALRQVGQ-YTAASDEFVQLARE------KGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh------CccchHHHHHHHHH
Confidence 999999999999999999987 34445678889999999999 99999999888765 22223445567888
Q ss_pred HHHcCChHHHHHHHHHHHHHHHh
Q psy875 241 YKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 241 ~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
+...|++++|...++++.+....
T Consensus 362 l~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhChh
Confidence 99999999999999998776433
No 93
>KOG1941|consensus
Probab=99.59 E-value=3.3e-13 Score=118.99 Aligned_cols=244 Identities=16% Similarity=0.131 Sum_probs=207.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCc--hHHHHHHHHHHHHHHhhccHHHHHH
Q psy875 20 ACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP--EAVKTLGEIGDLYELQEKSFEIVQS 97 (480)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~lg~~y~~~~~~~~~A~~ 97 (480)
..+.+..+...++..-.-.++.+++..+...-++.+++.+..-.+.+ .+..+ .-......+|.. +.-++.|+++++
T Consensus 66 a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~A-hlgls~fq~~Le 143 (518)
T KOG1941|consen 66 AVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNA-HLGLSVFQKALE 143 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHHHH-hhhHHHHHHHHH
Confidence 44446666666666777889999999999999999999999888887 33222 122445568888 666699999999
Q ss_pred HHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc--------cHHHHHHHHHHHHHhhccHH
Q psy875 98 THEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK--------DLASCYISLAQTYKDNKQYN 169 (480)
Q Consensus 98 ~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~--------~~~~~~~~la~~y~~~~~~~ 169 (480)
+|++|++++...+|+.....++..||.+|..+.++++|+.|..++..+...- ....+++.++..+..+|+.-
T Consensus 144 sfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lg 223 (518)
T KOG1941|consen 144 SFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLG 223 (518)
T ss_pred HHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999988888899999999999999999999999888655431 12567788999999999999
Q ss_pred HHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q psy875 170 LAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKF 247 (480)
Q Consensus 170 ~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (480)
.|.++.+++.++.-. +.+..+.+...+|++|...|+ .+.|..-|++|+......++...+..++...+++.....-.
T Consensus 224 dA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd-~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~ 302 (518)
T KOG1941|consen 224 DAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD-LERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQ 302 (518)
T ss_pred cHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc-HhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888443 788889999999999999999 99999999999999999999999999999999998877666
Q ss_pred HH-----HHHHHHHHHHHHHhhcc
Q psy875 248 TE-----LEQIKTELKSLEEKLDL 266 (480)
Q Consensus 248 ~~-----A~~~~~~~~~l~~~~~~ 266 (480)
.+ |+++-++.++++.+|+.
T Consensus 303 ~k~~~Crale~n~r~levA~~IG~ 326 (518)
T KOG1941|consen 303 NKICNCRALEFNTRLLEVASSIGA 326 (518)
T ss_pred hcccccchhHHHHHHHHHHHHhhh
Confidence 66 99999999999988876
No 94
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.59 E-value=1.4e-14 Score=151.01 Aligned_cols=155 Identities=21% Similarity=0.136 Sum_probs=117.4
Q ss_pred hhHhhhccCCccchhhhccC--CCcCCCCcCCCchHHH-HHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCC
Q psy875 306 QDKRTNRKRAPRSHFLIKRN--DKDSNLNLYNIESITI-SRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEK 382 (480)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 382 (480)
.-.....+|+......+... +.++|..+..+.++++ .|+.+++.+++++|++.|+. +
T Consensus 20 ~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~--------------------~ 79 (743)
T TIGR00870 20 AFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCR--------------------G 79 (743)
T ss_pred HHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCC--------------------C
Confidence 33445566666555544444 7778877888899999 99999999999999999871 1
Q ss_pred CCCchHHHHHHHcC---CHHHHHHHHhcCCC------CCC----CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccC
Q psy875 383 PRGETALHVAAARG---NLTLVQSLLKQGHP------VKV----QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQ 449 (480)
Q Consensus 383 ~~g~~~l~~a~~~~---~~~~~~~ll~~g~~------~~~----~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~ 449 (480)
..|.||||.|+..+ ...++..+...+.+ ++. ....|.||||+|+..|+.+++++|+++|++++..+.
T Consensus 80 ~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~ 159 (743)
T TIGR00870 80 AVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARAC 159 (743)
T ss_pred CcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcC
Confidence 23999999998732 22344444444422 111 234699999999999999999999999999984321
Q ss_pred ------------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 450 ------------DSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 450 ------------~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
...|.||||.|+..|+++++++|+++|+|++
T Consensus 160 ~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin 202 (743)
T TIGR00870 160 GDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL 202 (743)
T ss_pred CchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchh
Confidence 1258999999999999999999999999875
No 95
>KOG0505|consensus
Probab=99.59 E-value=1.8e-15 Score=139.57 Aligned_cols=152 Identities=28% Similarity=0.308 Sum_probs=127.4
Q ss_pred hhhccCCccchhhhc-----------cCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc-----
Q psy875 309 RTNRKRAPRSHFLIK-----------RNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL----- 372 (480)
Q Consensus 309 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~----- 372 (480)
..+..|.|++|.++. ..+.+||..++.+.+|+|.|+..|+..++++|+.+|+++...+.-+.-.
T Consensus 68 ~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e 147 (527)
T KOG0505|consen 68 LCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAE 147 (527)
T ss_pred ccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCcccccc
Confidence 345557788887654 4667889999999999999999999999999999999876543221100
Q ss_pred --------------------------------------cCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875 373 --------------------------------------ETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ 414 (480)
Q Consensus 373 --------------------------------------~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~ 414 (480)
.......+.++.|.|.||+|+..|..+++++|++.|.+++.+
T Consensus 148 ~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~ 227 (527)
T KOG0505|consen 148 DEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIK 227 (527)
T ss_pred CcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccc
Confidence 334444445667999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHH
Q psy875 415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAAN 462 (480)
Q Consensus 415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~ 462 (480)
|..||||||.|+.+|+.+++++|+++|++++ .....|.||+.+|..
T Consensus 228 D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d--~~t~~g~~p~dv~de 273 (527)
T KOG0505|consen 228 DYDGWTPLHAAAHWGQEDACELLVEHGADMD--AKTKMGETPLDVADE 273 (527)
T ss_pred cccCCCcccHHHHhhhHhHHHHHHHhhcccc--hhhhcCCCCccchhh
Confidence 9999999999999999999999999999999 458899999998864
No 96
>PRK12370 invasion protein regulator; Provisional
Probab=99.59 E-value=2.3e-13 Score=136.63 Aligned_cols=197 Identities=8% Similarity=-0.013 Sum_probs=155.8
Q ss_pred HHHHHHHHHh---ccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHhhh
Q psy875 39 CYISLAQTYK---DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ--------EKSFEIVQSTHEKALDLAR 107 (480)
Q Consensus 39 ~~~~lg~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~--------~~~~~~A~~~~~kAl~~~~ 107 (480)
.++..|..+. ..+.+++|+.+|++|+++ .|....++..+|.+|... .+++++|+..+++|+++.+
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP 335 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH 335 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC
Confidence 3555565443 346789999999999999 666677788888875422 1448999999999998854
Q ss_pred cCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcH
Q psy875 108 QNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP 187 (480)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~ 187 (480)
.. ..++..+|.++...|++++|+.+|++++...| +.+.+++.+|.++...|++++|+.++++++++.+.+
T Consensus 336 ~~------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-- 405 (553)
T PRK12370 336 NN------PQALGLLGLINTIHSEYIVGSLLFKQANLLSP--ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-- 405 (553)
T ss_pred CC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--
Confidence 32 56788999999999999999999999997775 445778999999999999999999999999994432
Q ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 188 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
...+..++.+++..|+ +++|+..+++++... ++.....+..++.++..+|++++|...++++
T Consensus 406 --~~~~~~~~~~~~~~g~-~eeA~~~~~~~l~~~-----~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 406 --AAAGITKLWITYYHTG-IDDAIRLGDELRSQH-----LQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred --hhhHHHHHHHHHhccC-HHHHHHHHHHHHHhc-----cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 3334456667788999 999999999987552 2333456788999999999999999998764
No 97
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.57 E-value=1.4e-13 Score=143.96 Aligned_cols=197 Identities=9% Similarity=0.046 Sum_probs=163.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV 118 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~ 118 (480)
.++.+|.++...|++++|+.+|+++++. .+.....+..++.. ....|++++|+..+++|+.+.+ . ..+
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l----~P~~~~l~~~La~~-l~~~Gr~~eAl~~~~~AL~l~P------~-~~a 611 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQR----GLGDNALYWWLHAQ-RYIPGQPELALNDLTRSLNIAP------S-ANA 611 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCccHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHhCC------C-HHH
Confidence 3678899999999999999999999988 34444444555555 3344999999999999998754 1 457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875 119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD 198 (480)
Q Consensus 119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~ 198 (480)
+.++|.++..+|++++|+..|++++...|+ ...++.++|.++...|++++|+.+|++++++ .|..+.++.++|.
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd--~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l----~P~~~~a~~nLA~ 685 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALELEPN--NSNYQAALGYALWDSGDIAQSREMLERAHKG----LPDDPALIRQLAY 685 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHH
Confidence 889999999999999999999999987754 4478999999999999999999999999998 4555788999999
Q ss_pred HHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 199 LYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
++..+|+ +++|+.+|++++++ .+....+....+.+.....+++.|.+-+.+...+
T Consensus 686 al~~lGd-~~eA~~~l~~Al~l------~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 686 VNQRLDD-MAATQHYARLVIDD------IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHCCC-HHHHHHHHHHHHhc------CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999 99999999999987 3455566667777888888888887777766554
No 98
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.57 E-value=1.9e-13 Score=148.92 Aligned_cols=210 Identities=9% Similarity=0.046 Sum_probs=164.6
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch----
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK---- 113 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~---- 113 (480)
..+..+|..+...|++++|+++|++++++ .|....++..+|.+|... |++++|+..+++++...+...+..
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~----~P~~~~~~~~LA~~~~~~-G~~~~A~~~l~~al~~~P~~~~~~~a~a 536 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLAL----DPGSVWLTYRLAQDLRQA-GQRSQADALMRRLAQQKPNDPEQVYAYG 536 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567888899999999999999999998 555566778899995444 999999999998886543221100
Q ss_pred ----------------------------------------------------------------HHHHHHHHHHHHHHhc
Q psy875 114 ----------------------------------------------------------------LIRTVMRSIKKLYKKH 129 (480)
Q Consensus 114 ----------------------------------------------------------------~~~~~~~~l~~~y~~~ 129 (480)
....++..+|.+|...
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQR 616 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 0012445788999999
Q ss_pred CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHH
Q psy875 130 DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFEL 209 (480)
Q Consensus 130 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (480)
|++++|+.+|++++...|. ...++..+|.+|...|++++|+++++++++. .+.....+..+|.++...|+ +++
T Consensus 617 g~~~~A~~~y~~al~~~P~--~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~----~p~~~~~~~~la~~~~~~g~-~~e 689 (1157)
T PRK11447 617 GDYAAARAAYQRVLTREPG--NADARLGLIEVDIAQGDLAAARAQLAKLPAT----ANDSLNTQRRVALAWAALGD-TAA 689 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc----CCCChHHHHHHHHHHHhCCC-HHH
Confidence 9999999999999977654 4578899999999999999999999988776 33345667889999999999 999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 210 VVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
|..+|++++..............++..++.++...|++++|..+|+++..
T Consensus 690 A~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 690 AQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999876543333223456777889999999999999999999974
No 99
>KOG0507|consensus
Probab=99.57 E-value=4e-15 Score=142.34 Aligned_cols=152 Identities=30% Similarity=0.320 Sum_probs=130.9
Q ss_pred hhhccCCccchhhhccCCCcC-----------CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCc
Q psy875 309 RTNRKRAPRSHFLIKRNDKDS-----------NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTT 377 (480)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~ 377 (480)
-...+|.+|+|++.+.+..++ |.....+.+++|.++..||.++|.+|+.+|+|+-..++
T Consensus 77 l~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nn---------- 146 (854)
T KOG0507|consen 77 LCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNN---------- 146 (854)
T ss_pred hhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCc----------
Confidence 344799999999999887754 66778889999999999999999999999999977644
Q ss_pred cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCC--------CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccC
Q psy875 378 SLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVK--------VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQ 449 (480)
Q Consensus 378 ~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~--------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~ 449 (480)
++.|+|-.|+..|..++++.|+....++- .++..+.+|||.|+.+||.+|++.|++.|.++|..
T Consensus 147 ------s~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~-- 218 (854)
T KOG0507|consen 147 ------SKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYT-- 218 (854)
T ss_pred ------ccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccc--
Confidence 59999999999999999999998754432 22345778999999999999999999999999943
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 450 DSAGWLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 450 ~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
.. ..|+||.|+..|..+++.+|++.|++.
T Consensus 219 t~-~gtalheaalcgk~evvr~ll~~gin~ 247 (854)
T KOG0507|consen 219 TE-DGTALHEAALCGKAEVVRFLLEIGINT 247 (854)
T ss_pred cc-cchhhhhHhhcCcchhhhHHHhhcccc
Confidence 44 459999999999999999999999875
No 100
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=5.3e-13 Score=133.99 Aligned_cols=202 Identities=13% Similarity=0.040 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHhc---------cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy875 34 KDLASCYISLAQTYKD---------NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALD 104 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~---------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~ 104 (480)
+..+.++..+|.+|.. .+++++|+..+++++++ .|....++..+|.++... |++++|+.+|++|++
T Consensus 292 P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l----dP~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 292 PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL----DHNNPQALGLLGLINTIH-SEYIVGSLLFKQANL 366 (553)
T ss_pred CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH
Confidence 3445677777776653 35589999999999999 677777888999995554 999999999999999
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 105 LARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
+.+.. ..++..+|.++...|++++|+..+++++...|... ..+..++.+++..|++++|+..++++++..
T Consensus 367 l~P~~------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~--~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-- 436 (553)
T PRK12370 367 LSPIS------ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA--AAGITKLWITYYHTGIDDAIRLGDELRSQH-- 436 (553)
T ss_pred hCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh--hhHHHHHHHHHhccCHHHHHHHHHHHHHhc--
Confidence 85432 45788999999999999999999999998887643 334456667778999999999999988762
Q ss_pred CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 185 NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
++..+..+..+|.++..+|+ +++|...+.+.... .+........++.+|...|+ +|...+++..+.
T Consensus 437 -~p~~~~~~~~la~~l~~~G~-~~eA~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 437 -LQDNPILLSMQVMFLSLKGK-HELARKLTKEISTQ------EITGLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred -cccCHHHHHHHHHHHHhCCC-HHHHHHHHHHhhhc------cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 23445678889999999999 99999999876433 33444556678888888884 777777665543
No 101
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.56 E-value=3.1e-13 Score=145.33 Aligned_cols=196 Identities=19% Similarity=0.171 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
...+..+|.++...|++++|++.|++++.. .++. ..+..++.+| ...|++++|+..+++++...+. ..
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~l~~~~-~~~g~~~~A~~~~~~~l~~~~~------~~ 770 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKR-APSS----QNAIKLHRAL-LASGNTAEAVKTLEAWLKTHPN------DA 770 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCc----hHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCC------CH
Confidence 345667778888888888888888888776 2222 4456677774 4448888888888887765332 14
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 196 (480)
.++..+|.+|...|++++|+.+|++++...+ ....++.++|.++...|+ .+|+.++++++++.+++ ...+..+
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~----~~~~~~~ 843 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAP--DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNI----PAILDTL 843 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCC----cHHHHHH
Confidence 5677888888888888888888888886654 345677888888888888 77888888888874333 3456788
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875 197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK 258 (480)
Q Consensus 197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 258 (480)
|.++...|+ +++|..+|+++++.. +....++..++.++.+.|++++|.+.++++.
T Consensus 844 ~~~~~~~g~-~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 844 GWLLVEKGE-ADRALPLLRKAVNIA------PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHcCC-HHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888999 999999999888763 2245677788889999999999998888764
No 102
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.56 E-value=2.5e-13 Score=112.93 Aligned_cols=169 Identities=17% Similarity=0.132 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHH
Q psy875 73 EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA 152 (480)
Q Consensus 73 ~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~ 152 (480)
..+.+...+|.-|... |++..|..-+++|+++.+. ...++..++.+|...|+.+.|-+.|++++...++ .+
T Consensus 33 ~aa~arlqLal~YL~~-gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~--~G 103 (250)
T COG3063 33 EAAKARLQLALGYLQQ-GDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN--NG 103 (250)
T ss_pred HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC--cc
Confidence 3456778889996566 9999999999999998543 3567889999999999999999999999987754 45
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy875 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRT 232 (480)
Q Consensus 153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 232 (480)
.+++|.|.-++.+|+|++|..+|.+|+... .-+..+.++.|+|.+..+.|+ ++.|.++|++++++ .+....
T Consensus 104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P--~Y~~~s~t~eN~G~Cal~~gq-~~~A~~~l~raL~~------dp~~~~ 174 (250)
T COG3063 104 DVLNNYGAFLCAQGRPEEAMQQFERALADP--AYGEPSDTLENLGLCALKAGQ-FDQAEEYLKRALEL------DPQFPP 174 (250)
T ss_pred chhhhhhHHHHhCCChHHHHHHHHHHHhCC--CCCCcchhhhhhHHHHhhcCC-chhHHHHHHHHHHh------CcCCCh
Confidence 889999999999999999999999998752 234557889999999999999 99999999999988 344445
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 233 VMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
....++..+.+.|++-.|..+++.+..
T Consensus 175 ~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 175 ALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 667889999999999999999987754
No 103
>KOG1129|consensus
Probab=99.55 E-value=1.5e-13 Score=119.48 Aligned_cols=230 Identities=16% Similarity=0.113 Sum_probs=182.5
Q ss_pred hhHHHhhccchhhhhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHH
Q psy875 3 FKIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG 82 (480)
Q Consensus 3 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg 82 (480)
++-|+.+|+. -++-.+..+.+... .....+..|+.+|.+..+...|+..|.+.++. .|.....+..++
T Consensus 230 gkCylrLgm~-r~AekqlqssL~q~-------~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g~A 297 (478)
T KOG1129|consen 230 GKCYLRLGMP-RRAEKQLQSSLTQF-------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLGQA 297 (478)
T ss_pred HHHHHHhcCh-hhhHHHHHHHhhcC-------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhhhH
Confidence 4566777776 44444433333211 23557888899999999999999999998887 666666778889
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHH
Q psy875 83 DLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTY 162 (480)
Q Consensus 83 ~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y 162 (480)
.+ +..++++++|.++|+.+++.-... ..+...+|.-|+.-++.+-|+.||++.++..-. ....+.|+|.++
T Consensus 298 Ri-~eam~~~~~a~~lYk~vlk~~~~n------vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~--speLf~NigLCC 368 (478)
T KOG1129|consen 298 RI-HEAMEQQEDALQLYKLVLKLHPIN------VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ--SPELFCNIGLCC 368 (478)
T ss_pred HH-HHHHHhHHHHHHHHHHHHhcCCcc------ceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--ChHHHhhHHHHH
Confidence 99 555599999999999998764322 334456788899999999999999998865432 236789999999
Q ss_pred HhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy875 163 KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYK 242 (480)
Q Consensus 163 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 242 (480)
+..++++-++..|++|+....+ +...+.+|+|+|.+....|+ +..|..+|+-++.- ......++.+|+.+-.
T Consensus 369 ~yaqQ~D~~L~sf~RAlstat~-~~~aaDvWYNlg~vaV~iGD-~nlA~rcfrlaL~~------d~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 369 LYAQQIDLVLPSFQRALSTATQ-PGQAADVWYNLGFVAVTIGD-FNLAKRCFRLALTS------DAQHGEALNNLAVLAA 440 (478)
T ss_pred HhhcchhhhHHHHHHHHhhccC-cchhhhhhhccceeEEeccc-hHHHHHHHHHHhcc------CcchHHHHHhHHHHHh
Confidence 9999999999999999988554 45678999999999999999 99999999888754 5667889999999999
Q ss_pred HcCChHHHHHHHHHHHHHH
Q psy875 243 KHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 243 ~~g~~~~A~~~~~~~~~l~ 261 (480)
+.|+.++|..++..+..+.
T Consensus 441 r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 441 RSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hcCchHHHHHHHHHhhhhC
Confidence 9999999999998876643
No 104
>KOG0507|consensus
Probab=99.55 E-value=1.1e-14 Score=139.50 Aligned_cols=142 Identities=30% Similarity=0.350 Sum_probs=126.6
Q ss_pred CCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHH
Q psy875 314 RAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAA 393 (480)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~ 393 (480)
++.++... .....+|..+.++.+++|.|+.+|+.+++++|++..+-++..+. +|.+|||+|+
T Consensus 29 r~~~l~~~--trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~----------------kg~~plhlaa 90 (854)
T KOG0507|consen 29 RSGLLFFT--TRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDT----------------KGILPLHLAA 90 (854)
T ss_pred CCCCCCCC--CCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhc----------------cCcceEEehh
Confidence 44454443 33445677788999999999999999999999999987776542 4999999999
Q ss_pred HcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy875 394 ARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473 (480)
Q Consensus 394 ~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll 473 (480)
+.|+.++++.++.++..+|..+..|.||||.|+..||.+++.+|+.+|+++. ++|..+.|+|..|++.|..++++.|+
T Consensus 91 w~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~--i~nns~~t~ldlA~qfgr~~Vvq~ll 168 (854)
T KOG0507|consen 91 WNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF--IRNNSKETVLDLASRFGRAEVVQMLL 168 (854)
T ss_pred hcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCcc--ccCcccccHHHHHHHhhhhHHHHHHh
Confidence 9999999999999998899999999999999999999999999999999999 66999999999999999999999998
Q ss_pred Hc
Q psy875 474 SA 475 (480)
Q Consensus 474 ~~ 475 (480)
+.
T Consensus 169 ~~ 170 (854)
T KOG0507|consen 169 QK 170 (854)
T ss_pred hh
Confidence 86
No 105
>KOG1941|consensus
Probab=99.55 E-value=1.8e-12 Score=114.33 Aligned_cols=228 Identities=15% Similarity=0.142 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC----
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK---- 110 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~---- 110 (480)
.++...+|..+...+.|++++++|++|+++. ..+..-....+..+|.+ +.++.|+++|+-+..+|.++....+
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl-f~~l~D~~Kal~f~~kA~~lv~s~~l~d~ 200 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL-FAQLKDYEKALFFPCKAAELVNSYGLKDW 200 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH-HHHHHhhhHHhhhhHhHHHHHHhcCcCch
Confidence 3566779999999999999999999999996 33333456678899999 7888999999999999999887655
Q ss_pred CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--
Q psy875 111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-- 184 (480)
Q Consensus 111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-- 184 (480)
.......+++.|+..+..+|..-.|.++.+++.+.... +..+.+...+|.+|...|+.+.|..-|+.|+.+...
T Consensus 201 ~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g 280 (518)
T KOG1941|consen 201 SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG 280 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh
Confidence 22556778899999999999999999999977654432 445778888999999999999999999999988655
Q ss_pred CcHHHHHHHHHHHHHHHHhCCchHH-----HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 185 NFPEAVKTLGEIGDLYELQEKPFEL-----VVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
+......++...|++.....- ..+ |++.-++.++++..++....+......++.+|..+|.-++-......+.+
T Consensus 281 drmgqv~al~g~Akc~~~~r~-~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 281 DRMGQVEALDGAAKCLETLRL-QNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 566677888888888877665 455 99999999999999999999999999999999999999988888877777
Q ss_pred HHHhhcc
Q psy875 260 LEEKLDL 266 (480)
Q Consensus 260 l~~~~~~ 266 (480)
....+..
T Consensus 360 ~~~e~~L 366 (518)
T KOG1941|consen 360 CVEETEL 366 (518)
T ss_pred HHHHHhh
Confidence 6655443
No 106
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=9.3e-13 Score=117.56 Aligned_cols=200 Identities=17% Similarity=0.106 Sum_probs=150.8
Q ss_pred hhHHHhhccchhhhhhhHHHHhh-hhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHH
Q psy875 3 FKIALSRGIGLSDSLDSACTELH-TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 81 (480)
Q Consensus 3 ~~~~~~~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 81 (480)
.+.++++|.. +...++....+. +.+.....+....++..+|.++...|++++|+++++++++. .+.....+..+
T Consensus 31 ~~~~~~la~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~ 105 (234)
T TIGR02521 31 AKIRVQLALG-YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL----NPNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHH
Confidence 3556666666 333333222211 11112223345678899999999999999999999999998 44455677889
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH
Q psy875 82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT 161 (480)
Q Consensus 82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~ 161 (480)
|.+|... |++++|+.++++++.... .+.....+.++|.++...|++++|..++.+++...+. ....+..+|.+
T Consensus 106 ~~~~~~~-g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~la~~ 178 (234)
T TIGR02521 106 GTFLCQQ-GKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ--RPESLLELAEL 178 (234)
T ss_pred HHHHHHc-ccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--ChHHHHHHHHH
Confidence 9995555 999999999999997432 2223456788999999999999999999999977654 34678899999
Q ss_pred HHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875 162 YKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD 219 (480)
Q Consensus 162 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~ 219 (480)
+...|++++|+.+++++++.. +.....+..++.++...|+ .++|..+.+....
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~ 231 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQTY----NQTAESLWLGIRIARALGD-VAAAQRYGAQLQK 231 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHh
Confidence 999999999999999999882 2234556678899999999 9999888776543
No 107
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.54 E-value=9.4e-13 Score=141.65 Aligned_cols=204 Identities=20% Similarity=0.220 Sum_probs=139.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc---------
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ--------- 108 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~--------- 108 (480)
..++..|..+..+|++++|+..+.++++. .|....++..+|.+|... |++++|+..+++++.....
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~a 97 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQK----DPNDAEARFLLGKIYLAL-GDYAAAEKELRKALSLGYPKNQVLPLLA 97 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCChhhhHHHHH
Confidence 34555566666666666666666666665 444445555666663333 6666666666665543211
Q ss_pred --------------------CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccH
Q psy875 109 --------------------NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQY 168 (480)
Q Consensus 109 --------------------~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~ 168 (480)
....+....++..+|.+|...|++++|+..|++++...+. ...++..+|.++...|++
T Consensus 98 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~~~~ 175 (899)
T TIGR02917 98 RAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR--SLYAKLGLAQLALAENRF 175 (899)
T ss_pred HHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHHCCCH
Confidence 1123445667788999999999999999999988876654 346778888899999999
Q ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChH
Q psy875 169 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFT 248 (480)
Q Consensus 169 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 248 (480)
++|+..++++++.. +.....+..+|.++...|+ +++|...|++++.. .+....++..++.++...|+++
T Consensus 176 ~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~------~p~~~~~~~~~~~~~~~~g~~~ 244 (899)
T TIGR02917 176 DEARALIDEVLTAD----PGNVDALLLKGDLLLSLGN-IELALAAYRKAIAL------RPNNPAVLLALATILIEAGEFE 244 (899)
T ss_pred HHHHHHHHHHHHhC----CCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHH
Confidence 99999998888763 3345677788888888888 88888888888765 1222345566677777777777
Q ss_pred HHHHHHHHHHH
Q psy875 249 ELEQIKTELKS 259 (480)
Q Consensus 249 ~A~~~~~~~~~ 259 (480)
+|...++++.+
T Consensus 245 ~A~~~~~~~~~ 255 (899)
T TIGR02917 245 EAEKHADALLK 255 (899)
T ss_pred HHHHHHHHHHH
Confidence 77776666544
No 108
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.54 E-value=1.1e-12 Score=119.93 Aligned_cols=223 Identities=13% Similarity=0.105 Sum_probs=170.5
Q ss_pred hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhh
Q psy875 30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLAR 107 (480)
Q Consensus 30 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~ 107 (480)
...+...+..|...|..|...+++++|.++|.++..+. .++....+.++...+.+ +.. .++++|+.+|++|+.++.
T Consensus 28 ~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~-~k~-~~~~~Ai~~~~~A~~~y~ 105 (282)
T PF14938_consen 28 KPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANC-YKK-GDPDEAIECYEKAIEIYR 105 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHH-TTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHh-hCHHHHHHHHHHHHHHHH
Confidence 45778889999999999999999999999999999987 44455567788888988 566 599999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875 108 QNKDDKLIRTVMRSIKKLYKKH-DNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH 182 (480)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~y~~~-~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~ 182 (480)
..+.....+.++..+|.+|... |++++|+++|++++..... .....++..+|.++..+|+|++|++.|++.....
T Consensus 106 ~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 106 EAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred hcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999999999999865433 2336788899999999999999999999988764
Q ss_pred hc---CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc--CChHHHHHHHHH
Q psy875 183 AR---NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH--DKFTELEQIKTE 256 (480)
Q Consensus 183 ~~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 256 (480)
.. ........+...+.+++..|+ +..|...+++........... ........|...+... ..+..|..-|+.
T Consensus 186 l~~~l~~~~~~~~~l~a~l~~L~~~D-~v~A~~~~~~~~~~~~~F~~s-~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 186 LENNLLKYSAKEYFLKAILCHLAMGD-YVAARKALERYCSQDPSFASS-REYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp CCHCTTGHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHGTTSTTSTTS-HHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred hcccccchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 33 233444566788889999999 999988888876553333333 3444556666666543 345555555543
No 109
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.54 E-value=9.7e-13 Score=121.21 Aligned_cols=199 Identities=14% Similarity=0.034 Sum_probs=141.1
Q ss_pred hhhHHHhhccchhhhhhhHHHH-hhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHH
Q psy875 2 RFKIALSRGIGLSDSLDSACTE-LHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 80 (480)
Q Consensus 2 ~~~~~~~~g~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 80 (480)
+++.|+.+|.+ +...+..... ..+.+.....+....+++.+|.++...|++++|+..|++++++ .|....++.+
T Consensus 63 ~a~~~~~~g~~-~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~ 137 (296)
T PRK11189 63 RAQLHYERGVL-YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAYLN 137 (296)
T ss_pred hHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHH
Confidence 46778899998 6666663332 2222333344556789999999999999999999999999999 6777788999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHH
Q psy875 81 IGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQ 160 (480)
Q Consensus 81 lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~ 160 (480)
+|.+|+.. |++++|+..+++++...+.. +. ...+ ..+....+++++|+..+.+.....+.+.. ..+.
T Consensus 138 lg~~l~~~-g~~~eA~~~~~~al~~~P~~---~~-~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~~~-----~~~~ 204 (296)
T PRK11189 138 RGIALYYG-GRYELAQDDLLAFYQDDPND---PY-RALW---LYLAESKLDPKQAKENLKQRYEKLDKEQW-----GWNI 204 (296)
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHhCCCC---HH-HHHH---HHHHHccCCHHHHHHHHHHHHhhCCcccc-----HHHH
Confidence 99996555 99999999999999875532 21 1111 12345578999999999876643322221 1345
Q ss_pred HHHhhccHHHHHHHHHHHHhhhhc---CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 161 TYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 161 ~y~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
++...|++.++ ..++.+.+.... ..+....+|+++|.++...|+ +++|+.+|++|++.
T Consensus 205 ~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~-~~~A~~~~~~Al~~ 265 (296)
T PRK11189 205 VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD-LDEAAALFKLALAN 265 (296)
T ss_pred HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence 55556666544 234443322211 134567899999999999999 99999999999976
No 110
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.52 E-value=1.9e-13 Score=122.12 Aligned_cols=129 Identities=35% Similarity=0.466 Sum_probs=116.4
Q ss_pred CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCC-----HHHHHHH
Q psy875 330 NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGN-----LTLVQSL 404 (480)
Q Consensus 330 ~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~-----~~~~~~l 404 (480)
.........+++.++..+...++++++..|++++..+ ..|.||||+|+..++ .++++.|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------~~g~t~l~~a~~~~~~~~~~~~~~~~l 130 (235)
T COG0666 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKD----------------ADGDTPLHLAALNGNPPEGNIEVAKLL 130 (235)
T ss_pred ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCccccc----------------CCCCcHHHHHHhcCCcccchHHHHHHH
Confidence 3444556788999999999999999999999997654 359999999999999 9999999
Q ss_pred HhcCC---CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy875 405 LKQGH---PVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG 476 (480)
Q Consensus 405 l~~g~---~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g 476 (480)
++.|+ ..+.+|..|+||||+|+..|+.++++.|++.|++++ ..+..|.||++.|+..++.+++..++..|
T Consensus 131 l~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 131 LEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPN--SRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred HHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCc--ccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 99999 566679999999999999999999999999999999 55899999999999999999999999865
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.51 E-value=2.5e-12 Score=115.13 Aligned_cols=180 Identities=12% Similarity=0.061 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~ 111 (480)
..+..+..++.+|..+...|++++|+..+++++.. .+..+....++..+|.+|+.. |++++|+..++++++..+...
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~~~p~~~- 104 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-YPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIRLHPNHP- 104 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCcCCC-
Confidence 44667889999999999999999999999999988 444555566789999995555 999999999999998876433
Q ss_pred chHHHHHHHHHHHHHHhc--------CChHHHHHHHHHHhcccccccHH---------------HHHHHHHHHHHhhccH
Q psy875 112 DKLIRTVMRSIKKLYKKH--------DNLDSACSELHTVLSSDLCKDLA---------------SCYISLAQTYKDNKQY 168 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~--------~~~~~A~~~~~~~l~~~~~~~~~---------------~~~~~la~~y~~~~~~ 168 (480)
....++..+|.++... |++++|+..|++++...+..... .....+|.+|...|++
T Consensus 105 --~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 182 (235)
T TIGR03302 105 --DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAY 182 (235)
T ss_pred --chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence 3345678888888876 88999999999998777664321 1124689999999999
Q ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy875 169 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKAL 218 (480)
Q Consensus 169 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al 218 (480)
.+|+..++++++..++. +....++..+|.++...|+ +++|..+++...
T Consensus 183 ~~A~~~~~~al~~~p~~-~~~~~a~~~l~~~~~~lg~-~~~A~~~~~~l~ 230 (235)
T TIGR03302 183 VAAINRFETVVENYPDT-PATEEALARLVEAYLKLGL-KDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHHCCCC-cchHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 99999999999886543 5567899999999999999 999999877653
No 112
>KOG1125|consensus
Probab=99.51 E-value=7e-13 Score=124.11 Aligned_cols=203 Identities=15% Similarity=0.142 Sum_probs=175.8
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875 41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR 120 (480)
Q Consensus 41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~ 120 (480)
+..|..+.+.|+..+|.=.|+.|+.- .|..+.+|..+|.+ +...++-..|+..+++|+++.+.. ..++.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq----dP~haeAW~~LG~~-qaENE~E~~ai~AL~rcl~LdP~N------leaLm 357 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ----DPQHAEAWQKLGIT-QAENENEQNAISALRRCLELDPTN------LEALM 357 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh----ChHHHHHHHHhhhH-hhhccchHHHHHHHHHHHhcCCcc------HHHHH
Confidence 66788999999999999999999888 89999999999999 777799999999999999985433 56788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhccccc---------------------------------------c--cHHHHHHHHH
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSDLC---------------------------------------K--DLASCYISLA 159 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~---------------------------------------~--~~~~~~~~la 159 (480)
.||..|...|.-.+|++++.+-+...+. + .-..++.-||
T Consensus 358 aLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 358 ALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 9999999999999999999865432211 1 2245677899
Q ss_pred HHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy875 160 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKK 239 (480)
Q Consensus 160 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 239 (480)
.+|.-.|+|++|+.+|+.||.. .|.-...|+.||..+..-.+ ..+|+..|++|+++ .|...++.++||.
T Consensus 438 VLy~ls~efdraiDcf~~AL~v----~Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rALqL------qP~yVR~RyNlgI 506 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQV----KPNDYLLWNRLGATLANGNR-SEEAISAYNRALQL------QPGYVRVRYNLGI 506 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhc----CCchHHHHHHhhHHhcCCcc-cHHHHHHHHHHHhc------CCCeeeeehhhhh
Confidence 9999999999999999999998 66668899999999999999 99999999999998 7788899999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875 240 LYKKHDKFTELEQIKTELKSLEEKLD 265 (480)
Q Consensus 240 ~~~~~g~~~~A~~~~~~~~~l~~~~~ 265 (480)
.+..+|.|++|..++-.++.+...-.
T Consensus 507 S~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999998876633
No 113
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1e-11 Score=108.22 Aligned_cols=212 Identities=12% Similarity=0.171 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~ 111 (480)
..+....+...||+.|.++|..+.||..-+..++--.-.......+...+|.- |+..|-++.|+..|....+.
T Consensus 64 ~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D-ym~aGl~DRAE~~f~~L~de------ 136 (389)
T COG2956 64 EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD-YMAAGLLDRAEDIFNQLVDE------ 136 (389)
T ss_pred cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHhcc------
Confidence 34567788999999999999999999998876654111123356678889999 55559999999888776543
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC---KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE 188 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 188 (480)
+..-..+...|-.+|....++++|++.-++.....+. -.++..|..||..+....+.+.|+..+.+|++. .+.
T Consensus 137 ~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa----~~~ 212 (389)
T COG2956 137 GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA----DKK 212 (389)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh----Ccc
Confidence 2223457788999999999999999999987766554 456888999999999999999999999999998 556
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 189 AVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
.+.+-..+|+++...|+ |+.|++.++.+++. ++.....+...|..+|.++|+.++...++.++.+.
T Consensus 213 cvRAsi~lG~v~~~~g~-y~~AV~~~e~v~eQ-----n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 213 CVRASIILGRVELAKGD-YQKAVEALERVLEQ-----NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred ceehhhhhhHHHHhccc-hHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 66777889999999999 99999999998765 56778899999999999999999999999988763
No 114
>KOG0547|consensus
Probab=99.50 E-value=1.1e-12 Score=120.24 Aligned_cols=182 Identities=18% Similarity=0.163 Sum_probs=153.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q psy875 26 TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDL 105 (480)
Q Consensus 26 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~ 105 (480)
+....++.+.-..+|+..|.+++-.++|++|+.-|++++++ .|..+..+..++.+.|.+ +.++++...|+.+.+-
T Consensus 383 F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L----~pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkk 457 (606)
T KOG0547|consen 383 FNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL----DPENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKK 457 (606)
T ss_pred HHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc----ChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 34444555566778999999999999999999999999999 888899999999995666 8999999999999988
Q ss_pred hhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH----HHHHHHHHHHHHhh-ccHHHHHHHHHHHHh
Q psy875 106 ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL----ASCYISLAQTYKDN-KQYNLAVDYFNKELR 180 (480)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~----~~~~~~la~~y~~~-~~~~~A~~~~~~al~ 180 (480)
++.. ..+|.-.|.++..+++|++|+++|.+++...+.... +..+..-|.+..+. +++..|+..+.+|++
T Consensus 458 FP~~------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 458 FPNC------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE 531 (606)
T ss_pred CCCC------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc
Confidence 7655 567888999999999999999999999977765221 23345555555444 899999999999999
Q ss_pred hhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875 181 LHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ 223 (480)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 223 (480)
+ .|..-.++..||.+..++|+ .++|+++|+++..+++.
T Consensus 532 ~----Dpkce~A~~tlaq~~lQ~~~-i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 532 L----DPKCEQAYETLAQFELQRGK-IDEAIELFEKSAQLART 569 (606)
T ss_pred c----CchHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHh
Confidence 9 67777889999999999999 99999999999988763
No 115
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.49 E-value=4.8e-13 Score=106.90 Aligned_cols=96 Identities=45% Similarity=0.713 Sum_probs=89.6
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~ 461 (480)
+.+|.||||+|+..++.+++++|++.|.+++.++..|.||+|.|+..+..+++++|+..|++++ ..+..|.||+|+|+
T Consensus 4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~--~~~~~~~~~l~~a~ 81 (126)
T cd00204 4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN--ARDKDGNTPLHLAA 81 (126)
T ss_pred CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHH
Confidence 4569999999999999999999999999989999999999999999999999999999998888 45888999999999
Q ss_pred HcCCHHHHHHHHHcCCCC
Q psy875 462 NHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 462 ~~~~~~~~~~Ll~~ga~~ 479 (480)
..++.+++++|+++|.++
T Consensus 82 ~~~~~~~~~~L~~~~~~~ 99 (126)
T cd00204 82 RNGNLDVVKLLLKHGADV 99 (126)
T ss_pred HcCcHHHHHHHHHcCCCC
Confidence 999999999999998654
No 116
>KOG2002|consensus
Probab=99.48 E-value=4.9e-12 Score=125.01 Aligned_cols=208 Identities=15% Similarity=0.141 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
..+.+.|+..++..|+|+.+.....-++.. .......+..++.+|..|+.+ |+|++|..||.+++...... ..
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~-t~~~~~~aes~Y~~gRs~Ha~-Gd~ekA~~yY~~s~k~~~d~-----~~ 342 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKN-TENKSIKAESFYQLGRSYHAQ-GDFEKAFKYYMESLKADNDN-----FV 342 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHccCCCC-----cc
Confidence 446788999999999999999999998887 555566778899999997777 99999999999998765432 23
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK----QYNLAVDYFNKELRLHARNFPEAVKT 192 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~----~~~~A~~~~~~al~~~~~~~~~~~~~ 192 (480)
..+..+|.+|...|+++.|+.+|++.+...|+ .......||.+|...+ .-++|..+..++++. .+....+
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~--~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~----~~~d~~a 416 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN--NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ----TPVDSEA 416 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhCcc--hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc----ccccHHH
Confidence 45678999999999999999999998866644 4466777888887775 667888888888877 4556788
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
|..+|.++....- ..++.+|.+|+.+....... .-..++.++|..+...|++.+|...+.++...
T Consensus 417 ~l~laql~e~~d~--~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 417 WLELAQLLEQTDP--WASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHHHHHHhcCh--HHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 9999999976544 55599999999887776655 56788999999999999999999999998775
No 117
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.48 E-value=4.8e-14 Score=93.81 Aligned_cols=55 Identities=49% Similarity=0.748 Sum_probs=32.7
Q ss_pred HHhcC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875 404 LLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460 (480)
Q Consensus 404 ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A 460 (480)
|++.| .++|.+|..|.||||+||..|+.+++++|++.|++++ ++|..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~--~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPN--AKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT-----TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCC--CCcCCCCCHHHhC
Confidence 56777 8899999999999999999999999999999999999 6699999999987
No 118
>KOG2003|consensus
Probab=99.47 E-value=3.1e-12 Score=116.08 Aligned_cols=199 Identities=13% Similarity=0.115 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
+.+..+.|++-+..|++++|.++|++|+.- ...-..+++++|.. +..+|+.++|+.+|-|.-.+... -+
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt-~e~~~~ldeald~f~klh~il~n------n~ 558 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLT-AEALGNLDEALDCFLKLHAILLN------NA 558 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhccc-HHHhcCHHHHHHHHHHHHHHHHh------hH
Confidence 456677888888888999999999888765 55556778888888 44448899998888776655432 26
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 196 (480)
.++..++.+|..+.+..+|++.|.++....|.. ..++..||.+|-+.|+-.+|..++-.+.+.+ |....+-..|
T Consensus 559 evl~qianiye~led~aqaie~~~q~~slip~d--p~ilskl~dlydqegdksqafq~~ydsyryf----p~nie~iewl 632 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANSLIPND--PAILSKLADLYDQEGDKSQAFQCHYDSYRYF----PCNIETIEWL 632 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC--HHHHHHHHHHhhcccchhhhhhhhhhccccc----CcchHHHHHH
Confidence 677888888888888899998888877555432 3567778888888888888888877776663 3334455567
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
|..|....- .++|+.||++|--+ .+.+......++.++.+.|+|.+|...|+...+
T Consensus 633 ~ayyidtqf-~ekai~y~ekaali------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 633 AAYYIDTQF-SEKAINYFEKAALI------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHhhHH-HHHHHHHHHHHHhc------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777 78888888887544 344555556678888888888888887776543
No 119
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.47 E-value=7.6e-12 Score=114.45 Aligned_cols=183 Identities=17% Similarity=0.170 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----c
Q psy875 74 AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----K 149 (480)
Q Consensus 74 ~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~ 149 (480)
.+..|...|.. +...++|++|...|.+|..+..+.++....+..|...+.+|... ++++|+.+|++++..... .
T Consensus 34 Aa~~y~~Aa~~-fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~ 111 (282)
T PF14938_consen 34 AADLYEKAANC-FKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS 111 (282)
T ss_dssp HHHHHHHHHHH-HHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHH-HHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence 34566666888 45559999999999999999988888888899999999998777 999999999998865443 3
Q ss_pred cHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC-
Q psy875 150 DLASCYISLAQTYKDN-KQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK- 225 (480)
Q Consensus 150 ~~~~~~~~la~~y~~~-~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~- 225 (480)
..+.++..+|.+|... |++++|+++|++|++++.. .+.....++..+|.++...|+ |++|++.|++........+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~-y~~A~~~~e~~~~~~l~~~l 190 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR-YEEAIEIYEEVAKKCLENNL 190 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTCCCHCT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHhhcccc
Confidence 4478999999999999 9999999999999999776 345667888999999999999 9999999999876533333
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 226 DDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
........+...+.++...|++..|...++++..
T Consensus 191 ~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 191 LKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2344556667788899999999999888877644
No 120
>KOG1125|consensus
Probab=99.46 E-value=3.5e-12 Score=119.50 Aligned_cols=213 Identities=15% Similarity=0.169 Sum_probs=168.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875 29 SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ 108 (480)
Q Consensus 29 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~ 108 (480)
...-.+.-+.++..||.+....++-..|+.-+++++++ .|....++..+|..|-.+ |.-.+|+.++.+-+....+
T Consensus 311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L----dP~NleaLmaLAVSytNe-g~q~~Al~~L~~Wi~~~p~ 385 (579)
T KOG1125|consen 311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL----DPTNLEALMALAVSYTNE-GLQNQALKMLDKWIRNKPK 385 (579)
T ss_pred HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc----CCccHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhCcc
Confidence 33445667899999999999999999999999999999 777778888999995555 8888999998888643311
Q ss_pred C---------C---------Cch-------------------HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH
Q psy875 109 N---------K---------DDK-------------------LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151 (480)
Q Consensus 109 ~---------~---------~~~-------------------~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~ 151 (480)
. . +.. .-..++..||.+|...|+|++|+.+|+.+|...|. -
T Consensus 386 y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn--d 463 (579)
T KOG1125|consen 386 YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN--D 463 (579)
T ss_pred chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc--h
Confidence 0 0 000 12334558999999999999999999999977754 4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHH-
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLI- 230 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~- 230 (480)
...++.||.++..-.+.++|+..|.+|+++ .|....+.+|+|..+..+|- |++|.++|-.||.+-++.......
T Consensus 464 ~~lWNRLGAtLAN~~~s~EAIsAY~rALqL----qP~yVR~RyNlgIS~mNlG~-ykEA~~hlL~AL~mq~ks~~~~~~~ 538 (579)
T KOG1125|consen 464 YLLWNRLGATLANGNRSEEAISAYNRALQL----QPGYVRVRYNLGISCMNLGA-YKEAVKHLLEALSMQRKSRNHNKAP 538 (579)
T ss_pred HHHHHHhhHHhcCCcccHHHHHHHHHHHhc----CCCeeeeehhhhhhhhhhhh-HHHHHHHHHHHHHhhhcccccccCC
Confidence 588999999999999999999999999999 67778899999999999999 999999999999987763322211
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHH
Q psy875 231 ---RTVMRSMKKLYKKHDKFTELEQI 253 (480)
Q Consensus 231 ---~~~~~~l~~~~~~~g~~~~A~~~ 253 (480)
..++..|-.+...+++.+.+...
T Consensus 539 ~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 539 MASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cchHHHHHHHHHHHHHcCCchHHHHh
Confidence 23444455666677777654443
No 121
>KOG0515|consensus
Probab=99.46 E-value=1.9e-13 Score=125.40 Aligned_cols=89 Identities=38% Similarity=0.553 Sum_probs=83.3
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHH
Q psy875 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDI 468 (480)
Q Consensus 389 l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~ 468 (480)
|.-|+..|-+++|+-.+..--|+...|..|.|+||-|+..||.+||++||+.|+++| ..|++||||||+|+..++..|
T Consensus 554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN--a~DSdGWTPLHCAASCNnv~~ 631 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN--AADSDGWTPLHCAASCNNVPM 631 (752)
T ss_pred HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc--CccCCCCchhhhhhhcCchHH
Confidence 456888999999999998888999999999999999999999999999999999999 669999999999999999999
Q ss_pred HHHHHHcCCCC
Q psy875 469 VQALVSAGAEV 479 (480)
Q Consensus 469 ~~~Ll~~ga~~ 479 (480)
++.|++.|+-|
T Consensus 632 ckqLVe~Gaav 642 (752)
T KOG0515|consen 632 CKQLVESGAAV 642 (752)
T ss_pred HHHHHhccceE
Confidence 99999999864
No 122
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.45 E-value=2e-13 Score=90.43 Aligned_cols=54 Identities=50% Similarity=0.716 Sum_probs=27.5
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy875 418 GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473 (480)
Q Consensus 418 g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll 473 (480)
|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din--~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADIN--AQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT---B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 4555555555555555555555555555 33555555555555555555555553
No 123
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.45 E-value=2.2e-13 Score=90.27 Aligned_cols=54 Identities=48% Similarity=0.726 Sum_probs=46.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q psy875 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV 438 (480)
Q Consensus 385 g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll 438 (480)
|.||||+|+..|+.+++++|++.|.++|.+|..|+||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 689999999999999999999999999999999999999999999999999986
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.45 E-value=3.2e-11 Score=107.95 Aligned_cols=179 Identities=9% Similarity=0.002 Sum_probs=144.3
Q ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-cc
Q psy875 72 PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KD 150 (480)
Q Consensus 72 ~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~ 150 (480)
......++..|..|+.. |++++|+..+++++...+. .+....++..+|.+|...|++++|+..|++++...|+ +.
T Consensus 30 ~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 30 EWPAEELYEEAKEALDS-GDYTEAIKYFEALESRYPF---SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred cCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 44567888999995555 9999999999999887543 3445567899999999999999999999999987775 33
Q ss_pred HHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHhhhhcCcHH-H------------HHHHHHHHHHHHHhCCchHH
Q psy875 151 LASCYISLAQTYKDN--------KQYNLAVDYFNKELRLHARNFPE-A------------VKTLGEIGDLYELQEKPFEL 209 (480)
Q Consensus 151 ~~~~~~~la~~y~~~--------~~~~~A~~~~~~al~~~~~~~~~-~------------~~~~~~l~~~~~~~~~~~~~ 209 (480)
...+++.+|.++... |++++|++.++++++..+.+... . ......+|.+|+.+|+ +.+
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~ 184 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA-YVA 184 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-hHH
Confidence 456788899999876 89999999999999885553211 0 1123478999999999 999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875 210 VVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK 258 (480)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 258 (480)
|+..++++++.. ++.+....++..++.++.++|++++|..+++...
T Consensus 185 A~~~~~~al~~~---p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 185 AINRFETVVENY---PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHC---CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988653 3345667889999999999999999999887654
No 125
>KOG0515|consensus
Probab=99.45 E-value=2.5e-13 Score=124.58 Aligned_cols=127 Identities=24% Similarity=0.273 Sum_probs=108.2
Q ss_pred CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q psy875 331 LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP 410 (480)
Q Consensus 331 ~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~ 410 (480)
...+++..+|..|+..|.+++|+-.+..--|+..- +..|.|+||-|+..|+.+||++|++.|++
T Consensus 545 RvrfnPLaLLLDaaLeGEldlVq~~i~ev~DpSqp----------------NdEGITaLHNAiCaghyeIVkFLi~~gan 608 (752)
T KOG0515|consen 545 RVRFNPLALLLDAALEGELDLVQRIIYEVTDPSQP----------------NDEGITALHNAICAGHYEIVKFLIEFGAN 608 (752)
T ss_pred ceecchHHHHHhhhhcchHHHHHHHHHhhcCCCCC----------------CccchhHHhhhhhcchhHHHHHHHhcCCc
Confidence 34678889999999999999999988776665543 23599999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH--HHcCCHHHHHHHHH
Q psy875 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA--ANHGHTDIVQALVS 474 (480)
Q Consensus 411 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A--~~~~~~~~~~~Ll~ 474 (480)
+|..|.+||||||+|+..+...+++.|++.|+-+... .=+++.||..-+ ...|..+|.++|..
T Consensus 609 VNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAs-TlSDmeTa~eKCee~eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 609 VNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFAS-TLSDMETAAEKCEEMEEGYDQCSQYLYG 673 (752)
T ss_pred ccCccCCCCchhhhhhhcCchHHHHHHHhccceEEee-ecccccchhhhcchhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999988742 335788987765 34577788888853
No 126
>KOG2002|consensus
Probab=99.45 E-value=1.2e-11 Score=122.38 Aligned_cols=214 Identities=16% Similarity=0.213 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
...+..+|++|..|..+|+|++|..+|.+++.. .++. ....+..+|+. +...|+++.|+.+|++.+...+..
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-~~d~--~~l~~~GlgQm-~i~~~dle~s~~~fEkv~k~~p~~---- 375 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-DNDN--FVLPLVGLGQM-YIKRGDLEESKFCFEKVLKQLPNN---- 375 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-CCCC--ccccccchhHH-HHHhchHHHHHHHHHHHHHhCcch----
Confidence 356788999999999999999999999999988 3322 35677899999 455599999999999999875533
Q ss_pred HHHHHHHHHHHHHHhcC----ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-CcHH
Q psy875 114 LIRTVMRSIKKLYKKHD----NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NFPE 188 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~----~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~~~ 188 (480)
..+...+|.+|...+ ..++|..+..+++... +....+|..+|.+|....-+.. +.+|.+|+.+... ....
T Consensus 376 --~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~i 450 (1018)
T KOG2002|consen 376 --YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQI 450 (1018)
T ss_pred --HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCC
Confidence 345567888888875 7788999999988655 5556889999999988766665 9999999977554 2334
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 189 AVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDD----KLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
.+..++++|..++..|. +.+|..+|.+|+.......+. .......++++.++..+++++.|.+.|+...+..
T Consensus 451 p~E~LNNvaslhf~~g~-~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGN-IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred CHHHHHhHHHHHHHhcC-hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 56789999999999999 999999999999874422221 1234567899999999999999999998877654
No 127
>KOG0548|consensus
Probab=99.44 E-value=1.8e-11 Score=113.90 Aligned_cols=212 Identities=17% Similarity=0.221 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC-C
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK-D 111 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~-~ 111 (480)
....+...-.+|+..+...++..|+++|.+++++ . ....-+.+++-+|+.. |.+.+.+..-.+|++...... +
T Consensus 220 ~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el----~-~~it~~~n~aA~~~e~-~~~~~c~~~c~~a~E~gre~rad 293 (539)
T KOG0548|consen 220 VKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL----A-TDITYLNNIAAVYLER-GKYAECIELCEKAVEVGRELRAD 293 (539)
T ss_pred HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH----h-hhhHHHHHHHHHHHhc-cHHHHhhcchHHHHHHhHHHHHH
Confidence 3456778899999999999999999999999999 3 3344456778885544 899988888888876544332 2
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------------------------ccHHHHHHHHHHHHHhhcc
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------------------------KDLASCYISLAQTYKDNKQ 167 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------------------------~~~~~~~~~la~~y~~~~~ 167 (480)
...++.++..+|..|..+++++.|+.+|++++..... +..+.--..-|+.++..|+
T Consensus 294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC
Confidence 3557778888999999999999999999988854333 2223334445999999999
Q ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q psy875 168 YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKF 247 (480)
Q Consensus 168 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (480)
|..|+.+|.+++.. .|..+..|.|.|.+|.+++. +..|+.-.++++++ .+.....|...|.++..+.+|
T Consensus 374 y~~Av~~YteAIkr----~P~Da~lYsNRAac~~kL~~-~~~aL~Da~~~ieL------~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKR----DPEDARLYSNRAACYLKLGE-YPEALKDAKKCIEL------DPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHHHHHHHHhc----CCchhHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc------CchHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 57778899999999999999 99999999999988 677888899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy875 248 TELEQIKTELKSLE 261 (480)
Q Consensus 248 ~~A~~~~~~~~~l~ 261 (480)
++|++.|+++.++.
T Consensus 443 dkAleay~eale~d 456 (539)
T KOG0548|consen 443 DKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988754
No 128
>KOG3676|consensus
Probab=99.44 E-value=5.7e-13 Score=129.47 Aligned_cols=141 Identities=30% Similarity=0.329 Sum_probs=116.0
Q ss_pred CCCcCCCCcCCCchHHHHHHh---hCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHH
Q psy875 325 NDKDSNLNLYNIESITISRNR---LGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLV 401 (480)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~a~~---~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~ 401 (480)
-+.+++..+..|.+++|.|.. .++.++++.|++.-..+-- .. ...+.-.|.||||.|+.+.+.++|
T Consensus 132 ~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lin--d~---------~~~eeY~GqSaLHiAIv~~~~~~V 200 (782)
T KOG3676|consen 132 TDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLIN--DI---------YTSEEYYGQSALHIAIVNRDAELV 200 (782)
T ss_pred hhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhh--hh---------hhhHhhcCcchHHHHHHhccHHHH
Confidence 345667778889999998876 5677999999987552211 00 000112399999999999999999
Q ss_pred HHHHhcCCCCCCCC---------C--------------CCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHH
Q psy875 402 QSLLKQGHPVKVQD---------S--------------AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLH 458 (480)
Q Consensus 402 ~~ll~~g~~~~~~~---------~--------------~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~ 458 (480)
++|++.|+|++++- . .|..||-+|+..++.+++++|+++|+|++ .+|++|+|.||
T Consensus 201 ~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~--aqDS~GNTVLH 278 (782)
T KOG3676|consen 201 RLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPN--AQDSNGNTVLH 278 (782)
T ss_pred HHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCC--ccccCCChHHH
Confidence 99999999998652 1 26789999999999999999999999999 77999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCC
Q psy875 459 EAANHGHTDIVQALVSAGAE 478 (480)
Q Consensus 459 ~A~~~~~~~~~~~Ll~~ga~ 478 (480)
..+.+-..+|..+++++|++
T Consensus 279 ~lVi~~~~~My~~~L~~ga~ 298 (782)
T KOG3676|consen 279 MLVIHFVTEMYDLALELGAN 298 (782)
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997
No 129
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.42 E-value=1e-12 Score=133.77 Aligned_cols=87 Identities=34% Similarity=0.505 Sum_probs=83.9
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCH
Q psy875 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT 466 (480)
Q Consensus 387 ~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~ 466 (480)
++|+.|+..|+.+.++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn--~~d~~G~TpLh~A~~~g~~ 161 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT--LLDKDGKTPLELAEENGFR 161 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCCcH
Confidence 46889999999999999999999999999999999999999999999999999999999 5699999999999999999
Q ss_pred HHHHHHHHc
Q psy875 467 DIVQALVSA 475 (480)
Q Consensus 467 ~~~~~Ll~~ 475 (480)
+++++|+.+
T Consensus 162 ~iv~~Ll~~ 170 (664)
T PTZ00322 162 EVVQLLSRH 170 (664)
T ss_pred HHHHHHHhC
Confidence 999999998
No 130
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.41 E-value=2.7e-12 Score=117.99 Aligned_cols=197 Identities=15% Similarity=0.134 Sum_probs=95.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV 118 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~ 118 (480)
.+..++.+ ...+++++|++++.++.+. .++ ...+..+..+| ...++++++...+.++..... .+.-...
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~-~~~----~~~l~~~l~~~-~~~~~~~~~~~~l~~~~~~~~----~~~~~~~ 148 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYER-DGD----PRYLLSALQLY-YRLGDYDEAEELLEKLEELPA----APDSARF 148 (280)
T ss_dssp --------------------------------------------H-H-HHTT-HHHHHHHHHHHHH-T-------T-HHH
T ss_pred cccccccc-ccccccccccccccccccc-ccc----cchhhHHHHHH-HHHhHHHHHHHHHHHHHhccC----CCCCHHH
Confidence 34444444 4556666666666655544 111 12223344553 334777777777777664221 1223456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875 119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD 198 (480)
Q Consensus 119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~ 198 (480)
+..+|.++...|++++|+.+|++++...|+.. .+...++.++...|+++++.+.+....+..+.+ +..+..+|.
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~--~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~----~~~~~~la~ 222 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELDPDDP--DARNALAWLLIDMGDYDEAREALKRLLKAAPDD----PDLWDALAA 222 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS----CCHCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH----HHHHHHHHH
Confidence 77888888888888888888888887775533 556778888888888888777777766653332 235667888
Q ss_pred HHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 199 LYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
++..+|+ +++|+.+|+++++. .+.-..++..+|.++...|++++|..+++++.+
T Consensus 223 ~~~~lg~-~~~Al~~~~~~~~~------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 223 AYLQLGR-YEEALEYLEKALKL------NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHT--HHHHHHHHHHHHHH------STT-HHHHHHHHHHHT-----------------
T ss_pred Hhccccc-cccccccccccccc------ccccccccccccccccccccccccccccccccc
Confidence 9999999 99999999988765 333445666888999999999999888887764
No 131
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.38 E-value=1.8e-12 Score=131.85 Aligned_cols=105 Identities=28% Similarity=0.315 Sum_probs=93.9
Q ss_pred HHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q psy875 339 ITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAG 418 (480)
Q Consensus 339 ~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g 418 (480)
.++.|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.+|..|
T Consensus 85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d----------------~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G 148 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLTGGADPNCRD----------------YDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDG 148 (664)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcC----------------CCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence 4778888999999999999999998754 359999999999999999999999999999999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHc-------CCCCCCccCCCCCCcHHHHHH
Q psy875 419 WLPLHEAANHGHTDIVQALVSA-------GADPNDKVQDSAGWLPLHEAA 461 (480)
Q Consensus 419 ~t~l~~a~~~~~~~~~~~Ll~~-------g~~~~~~~~~~~g~tpl~~A~ 461 (480)
+||||+|+..|+.+++++|+.+ |++++ ..+..|.+|+..+.
T Consensus 149 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~--~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 149 KTPLELAEENGFREVVQLLSRHSQCHFELGANAK--PDSFTGKPPSLEDS 196 (664)
T ss_pred CCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCC--ccccCCCCccchhh
Confidence 9999999999999999999998 88887 44677877776554
No 132
>KOG1129|consensus
Probab=99.38 E-value=5.6e-12 Score=109.89 Aligned_cols=198 Identities=13% Similarity=0.072 Sum_probs=165.5
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875 40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVM 119 (480)
Q Consensus 40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~ 119 (480)
-..+|.+|.+.|-+.+|.+.++.+++. .....++..++.+ |....+...|+..+.+.++.++.. ...+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q-----~~~~dTfllLskv-Y~ridQP~~AL~~~~~gld~fP~~------VT~l 293 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ-----FPHPDTFLLLSKV-YQRIDQPERALLVIGEGLDSFPFD------VTYL 293 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc-----CCchhHHHHHHHH-HHHhccHHHHHHHHhhhhhcCCch------hhhh
Confidence 467999999999999999999999986 3345667788999 455599999999999998775432 3345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q psy875 120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL 199 (480)
Q Consensus 120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 199 (480)
..++.++..++++++|.++|+.+++..+. ...+...+|..|+..++.+-|+.||.+.+++ ....+..++|+|.+
T Consensus 294 ~g~ARi~eam~~~~~a~~lYk~vlk~~~~--nvEaiAcia~~yfY~~~PE~AlryYRRiLqm----G~~speLf~NigLC 367 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQLYKLVLKLHPI--NVEAIACIAVGYFYDNNPEMALRYYRRILQM----GAQSPELFCNIGLC 367 (478)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHhcCCc--cceeeeeeeeccccCCChHHHHHHHHHHHHh----cCCChHHHhhHHHH
Confidence 68899999999999999999999976643 3345556888899999999999999999998 33446789999999
Q ss_pred HHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 200 YELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 200 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
++..++ ++-++..|++|+..+. ++....+++++|+.+....|++..|.+.++-+..
T Consensus 368 C~yaqQ-~D~~L~sf~RAlstat---~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 368 CLYAQQ-IDLVLPSFQRALSTAT---QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHhhcc-hhhhHHHHHHHHhhcc---CcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 999999 9999999999998764 3445678999999999999999999999987654
No 133
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.37 E-value=6.6e-13 Score=88.29 Aligned_cols=44 Identities=39% Similarity=0.521 Sum_probs=30.7
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEA 425 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a 425 (480)
|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus 13 d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 13 DKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 44599999999999999999999999999999999999999987
No 134
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.34 E-value=2e-10 Score=119.92 Aligned_cols=206 Identities=10% Similarity=-0.009 Sum_probs=158.1
Q ss_pred HHHHHH-HHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 37 ASCYIS-LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 37 ~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
..+... +|.+ ...|++++|+..|+++++. ....+..+.. .+|.+|.. .|++++|+.+|++++...+.. ....
T Consensus 237 ~~a~~d~l~~L-l~~g~~~eA~~~~~~ll~~-~~~~P~~a~~--~la~~yl~-~g~~e~A~~~l~~~l~~~p~~--~~~~ 309 (765)
T PRK10049 237 QRARIDRLGAL-LARDRYKDVISEYQRLKAE-GQIIPPWAQR--WVASAYLK-LHQPEKAQSILTELFYHPETI--ADLS 309 (765)
T ss_pred HHHHHHHHHHH-HHhhhHHHHHHHHHHhhcc-CCCCCHHHHH--HHHHHHHh-cCCcHHHHHHHHHHhhcCCCC--CCCC
Confidence 334343 4444 5779999999999998876 3333444433 35888444 599999999999988643221 1111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-------------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-------------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH 182 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-------------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~ 182 (480)
......++.++...|++++|+.+++++....|. +....++..+|.++...|++++|+..+++++...
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 234567778889999999999999988866542 1234577889999999999999999999999884
Q ss_pred hcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 183 ARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
|.....+..+|.++...|+ +++|+..+++++.+ .|....++..++.++..+|++++|+..++++.+.
T Consensus 390 ----P~n~~l~~~lA~l~~~~g~-~~~A~~~l~~al~l------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 390 ----PGNQGLRIDYASVLQARGW-PRAAENELKKAEVL------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred ----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 4446789999999999999 99999999999987 3444457778899999999999999999888764
No 135
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=4.9e-10 Score=97.97 Aligned_cols=203 Identities=14% Similarity=0.126 Sum_probs=166.3
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875 41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR 120 (480)
Q Consensus 41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~ 120 (480)
|..|.-+.-..+.++|+..|...++. .+....+...+|.+ +...|..+.|+...+-.+.-.... ......+..
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnL-fRsRGEvDRAIRiHQ~L~~spdlT--~~qr~lAl~ 111 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQE----DPETFEAHLTLGNL-FRSRGEVDRAIRIHQTLLESPDLT--FEQRLLALQ 111 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhc----CchhhHHHHHHHHH-HHhcchHHHHHHHHHHHhcCCCCc--hHHHHHHHH
Confidence 34455566678999999999999887 78888899999999 555599999998877655432211 233456788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHHH
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NFPEAVKTLGEIGDL 199 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~ 199 (480)
.||.=|...|-++.|...|........- ...+...|..+|....+|++|++...+-.++... .....+..|+.+|..
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 9999999999999999999987654322 2367888999999999999999999988888555 567889999999999
Q ss_pred HHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 200 YELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 200 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
+....+ .+.|...+.+|+.. .+.-.++-..+|+++...|+|+.|.+.++.+.+
T Consensus 190 ~~~~~~-~d~A~~~l~kAlqa------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 190 ALASSD-VDRARELLKKALQA------DKKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred Hhhhhh-HHHHHHHHHHHHhh------CccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 999999 99999999999987 445566777899999999999999999988765
No 136
>KOG1710|consensus
Probab=99.32 E-value=6.3e-12 Score=107.04 Aligned_cols=114 Identities=22% Similarity=0.166 Sum_probs=100.1
Q ss_pred hhhccCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchH
Q psy875 309 RTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETA 388 (480)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 388 (480)
....+++|--..++..+...+|..+.+++++|..|+..|+.++|++|+++|+|+|.+.. ..+.||
T Consensus 18 e~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qh---------------g~~YTp 82 (396)
T KOG1710|consen 18 EAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQH---------------GTLYTP 82 (396)
T ss_pred HHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccc---------------cccccH
Confidence 34456777777777777777899999999999999999999999999999999998643 238899
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHH
Q psy875 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL 437 (480)
Q Consensus 389 l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L 437 (480)
||+|+.+|+.++.++|++.|+.+...|.-|+|+-.+|+.-|+.+||..+
T Consensus 83 LmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iI 131 (396)
T KOG1710|consen 83 LMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAII 131 (396)
T ss_pred HHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHH
Confidence 9999999999999999999999999999999999999999999988765
No 137
>KOG0548|consensus
Probab=99.32 E-value=5.3e-10 Score=104.28 Aligned_cols=195 Identities=16% Similarity=0.197 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh---hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLH---ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
-...+.+.+.+|+..|.+.+.+....++++.- -.+...++.++..+|..|... ++++.|+.+|++++...+.....
T Consensus 256 ~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~-~~~~~ai~~~~kaLte~Rt~~~l 334 (539)
T KOG0548|consen 256 DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR-EDYEGAIKYYQKALTEHRTPDLL 334 (539)
T ss_pred hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH-HhHHHHHHHHHHHhhhhcCHHHH
Confidence 34556788899999999999999999888872 111223556666788895555 99999999999999765542111
Q ss_pred --------------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHH
Q psy875 113 --------------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAV 172 (480)
Q Consensus 113 --------------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~ 172 (480)
+..+.-...-|..++..|+|..|+..|.+++... |+-+..|.|.|.+|..++.+..|+
T Consensus 335 s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL 412 (539)
T KOG0548|consen 335 SKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEAL 412 (539)
T ss_pred HHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHH
Confidence 2223334477999999999999999999988666 566789999999999999999999
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy875 173 DYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH 244 (480)
Q Consensus 173 ~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (480)
.-.++++++ .|.....|..-|.++..+++ |++|++.|+++++. .+....+...+.++...+
T Consensus 413 ~Da~~~ieL----~p~~~kgy~RKg~al~~mk~-ydkAleay~eale~------dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 413 KDAKKCIEL----DPNFIKAYLRKGAALRAMKE-YDKALEAYQEALEL------DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHhc----CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc------CchhHHHHHHHHHHHHHh
Confidence 999999999 77788999999999999999 99999999999987 344455555555555554
No 138
>KOG2076|consensus
Probab=99.31 E-value=3.3e-10 Score=111.63 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHH
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIR 231 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 231 (480)
...|..++..|.+.|+|.+|+.++-...... .......|..+|.+|..+|. |++|+++|++++.. .|...
T Consensus 414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~---~~~~~~vw~~~a~c~~~l~e-~e~A~e~y~kvl~~------~p~~~ 483 (895)
T KOG2076|consen 414 VDLYLDLADALTNIGKYKEALRLLSPITNRE---GYQNAFVWYKLARCYMELGE-YEEAIEFYEKVLIL------APDNL 483 (895)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcCc---cccchhhhHHHHHHHHHHhh-HHHHHHHHHHHHhc------CCCch
Confidence 4467778888888888888888887766542 22236688889999999999 99999999988877 45556
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 232 TVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 232 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
++...|+.++.++|++++|.+.+...
T Consensus 484 D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 484 DARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred hhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 67778888999999998888777553
No 139
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.30 E-value=3e-10 Score=108.56 Aligned_cols=208 Identities=12% Similarity=-0.000 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
++.+.+|..+|.++...|+++.+.+.+.++.... .............|.++... |++++|...+++++...+.. .
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~P~~---~ 77 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIA-GDLPKALALLEQLLDDYPRD---L 77 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCc---H
Confidence 3457789999999999999999999988888773 32223334445567774555 99999999999999875422 1
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhc--ccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLS--SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 191 (480)
.++.. +..+...|.+..+.....+++. ....+.....+..+|.++..+|++++|+..+++++++.+. ...
T Consensus 78 ---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~----~~~ 149 (355)
T cd05804 78 ---LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD----DAW 149 (355)
T ss_pred ---HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CcH
Confidence 22222 4444444444333333333332 1223555677788999999999999999999999998443 356
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
.+..+|.++...|+ +++|+.++++++..... .+......+..++.++..+|++++|...++++
T Consensus 150 ~~~~la~i~~~~g~-~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 150 AVHAVAHVLEMQGR-FKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 78889999999999 99999999999876432 23334456778999999999999999999987
No 140
>KOG1710|consensus
Probab=99.30 E-value=2.8e-11 Score=103.13 Aligned_cols=122 Identities=29% Similarity=0.301 Sum_probs=103.3
Q ss_pred CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875 335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ 414 (480)
Q Consensus 335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~ 414 (480)
.+..+|..+...+..+-..-|++---.+| ..||+|.+||..|+..|+.+++++|++.|+|+|..
T Consensus 11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn----------------~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~ 74 (396)
T KOG1710|consen 11 APKSPLLEAIDKNDTEAALALLSTVRQVN----------------QRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDK 74 (396)
T ss_pred chhhHHHHHHccCcHHHHHHHHHHhhhhh----------------ccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc
Confidence 44566777777777777777776532233 45678999999999999999999999999999875
Q ss_pred -CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875 415 -DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474 (480)
Q Consensus 415 -~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 474 (480)
+..+.||||+|+..|..++..+|++.|+.+. ..++-|+|+-..|+.-|+.+||..+-.
T Consensus 75 qhg~~YTpLmFAALSGn~dvcrllldaGa~~~--~vNsvgrTAaqmAAFVG~H~CV~iINN 133 (396)
T KOG1710|consen 75 QHGTLYTPLMFAALSGNQDVCRLLLDAGARMY--LVNSVGRTAAQMAAFVGHHECVAIINN 133 (396)
T ss_pred cccccccHHHHHHHcCCchHHHHHHhccCccc--cccchhhhHHHHHHHhcchHHHHHHhc
Confidence 4678999999999999999999999999998 668999999999999999999987643
No 141
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.29 E-value=1.7e-11 Score=112.70 Aligned_cols=201 Identities=17% Similarity=0.161 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
-...+..+|.+....++++.|+..|++.+.. .+.....+..++.+ ... +++++|+.++.++.+... ++
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~----~~~~~~~~~~l~~l-~~~-~~~~~A~~~~~~~~~~~~---~~--- 110 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLAS----DKANPQDYERLIQL-LQD-GDPEEALKLAEKAYERDG---DP--- 110 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc----cccccccccccccc-ccc-cccccccccccccccccc---cc---
Confidence 3466777888888999999999999998887 33333344555555 444 889999998888775432 22
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 195 (480)
..+.....++...++++++...+.++......+.-...+..+|.++.+.|++++|+..|+++++. .|....+...
T Consensus 111 -~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~P~~~~~~~~ 185 (280)
T PF13429_consen 111 -RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL----DPDDPDARNA 185 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----TT-HHHHHH
T ss_pred -chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHH
Confidence 23345667889999999999999987654433455678889999999999999999999999999 4444567788
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
++.++...|+ ++++.+.+......... ++ ..+..+|.+|..+|++++|+.+++++...
T Consensus 186 l~~~li~~~~-~~~~~~~l~~~~~~~~~--~~----~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 186 LAWLLIDMGD-YDEAREALKRLLKAAPD--DP----DLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHCTTCH-HHHHHHHHHHHHHH-HT--SC----CHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-hHHHHHHHHHHHHHCcC--HH----HHHHHHHHHhccccccccccccccccccc
Confidence 9999999999 99988877776655421 11 24457899999999999999999998763
No 142
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.29 E-value=3.7e-09 Score=113.92 Aligned_cols=229 Identities=12% Similarity=0.039 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-h-c--cCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-A-R--NFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK 110 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~-~--~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~ 110 (480)
....++..+|.++...|+++.|..++.+++.+. . . ........+..+|.+++.. |++++|...+.+++.+.....
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~ 607 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW-ARLDEAEQCARKGLEVLSNYQ 607 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhHHhhhccC
Confidence 344566667777777777777777777776664 1 1 1111233344566664444 777777777777776655433
Q ss_pred CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc-H----HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC
Q psy875 111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-L----ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN 185 (480)
Q Consensus 111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-~----~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~ 185 (480)
......++..+|.++...|++++|...+.++........ . ..........+...|+.+.|..++..........
T Consensus 608 -~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~ 686 (903)
T PRK04841 608 -PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFAN 686 (903)
T ss_pred -chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCcc
Confidence 222344556677777777777777777766654322111 0 0000011233344566666666655543321111
Q ss_pred cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875 186 FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLD 265 (480)
Q Consensus 186 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~ 265 (480)
.......+..+|.++...|+ +++|...+++++...+..+.......++..++.++...|+.++|...+.++.++....+
T Consensus 687 ~~~~~~~~~~~a~~~~~~g~-~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 687 NHFLQGQWRNIARAQILLGQ-FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred chhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 11122335678999999999 99999999999999888888888888999999999999999999999999999886544
Q ss_pred c
Q psy875 266 L 266 (480)
Q Consensus 266 ~ 266 (480)
.
T Consensus 766 ~ 766 (903)
T PRK04841 766 F 766 (903)
T ss_pred h
Confidence 3
No 143
>KOG4369|consensus
Probab=99.28 E-value=3.5e-12 Score=126.80 Aligned_cols=152 Identities=22% Similarity=0.260 Sum_probs=87.6
Q ss_pred CCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHH
Q psy875 314 RAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAA 393 (480)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~ 393 (480)
|..-+..++...+.++...+..+.++++.|+..||..+|+.|+.+.+++..+. |..+.|+|-+||
T Consensus 768 gh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQs---------------drtkdt~lSlac 832 (2131)
T KOG4369|consen 768 GHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQS---------------DRTKDTMLSLAC 832 (2131)
T ss_pred ccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhc---------------ccccCceEEEec
Confidence 33333333333444444444444555555555555555555555555554432 223566666666
Q ss_pred HcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy875 394 ARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473 (480)
Q Consensus 394 ~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll 473 (480)
..|..++|++||..|++-..++-...|||.+|...|.+++|+.|+.+|..+|.....+.|..||+.|..+||.+.++.|+
T Consensus 833 sggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll 912 (2131)
T KOG4369|consen 833 SGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLL 912 (2131)
T ss_pred CCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHh
Confidence 66666666666666666656655566666666666666666666666666665444556666666666666666666666
Q ss_pred HcCCCCC
Q psy875 474 SAGAEVS 480 (480)
Q Consensus 474 ~~ga~~~ 480 (480)
+.|.|||
T Consensus 913 ~~gsdiN 919 (2131)
T KOG4369|consen 913 QPGSDIN 919 (2131)
T ss_pred cccchhc
Confidence 6666654
No 144
>KOG2003|consensus
Probab=99.27 E-value=1.4e-09 Score=99.25 Aligned_cols=200 Identities=14% Similarity=0.112 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
......+++++|..+..+|+.++|+.+|.+.-.+ ....+..+..++.+| ..+.+..+|++++.++..+.+. +
T Consensus 520 dasc~ealfniglt~e~~~~ldeald~f~klh~i----l~nn~evl~qianiy-e~led~aqaie~~~q~~slip~---d 591 (840)
T KOG2003|consen 520 DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI----LLNNAEVLVQIANIY-ELLEDPAQAIELLMQANSLIPN---D 591 (840)
T ss_pred chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH----HHhhHHHHHHHHHHH-HHhhCHHHHHHHHHHhcccCCC---C
Confidence 3456778999999999999999999999998777 445567788999995 5559999999999999877543 2
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT 192 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 192 (480)
..++..||.+|-+.|+-.+|..|+-.+....|. .....-.||..|.+..-+++|+.||+++--+ .|.....
T Consensus 592 ---p~ilskl~dlydqegdksqafq~~ydsyryfp~--nie~iewl~ayyidtqf~ekai~y~ekaali----qp~~~kw 662 (840)
T KOG2003|consen 592 ---PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC--NIETIEWLAAYYIDTQFSEKAINYFEKAALI----QPNQSKW 662 (840)
T ss_pred ---HHHHHHHHHHhhcccchhhhhhhhhhcccccCc--chHHHHHHHHHHHhhHHHHHHHHHHHHHHhc----CccHHHH
Confidence 346788999999999999999998877655543 2355667999999999999999999998777 4566677
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
..-++.++.+.|+ |++|.+.|+..-.. . +.-.+++..|.++.-.+|-. +|.+|.++.
T Consensus 663 qlmiasc~rrsgn-yqka~d~yk~~hrk---f---pedldclkflvri~~dlgl~-d~key~~kl 719 (840)
T KOG2003|consen 663 QLMIASCFRRSGN-YQKAFDLYKDIHRK---F---PEDLDCLKFLVRIAGDLGLK-DAKEYADKL 719 (840)
T ss_pred HHHHHHHHHhccc-HHHHHHHHHHHHHh---C---ccchHHHHHHHHHhccccch-hHHHHHHHH
Confidence 7788999999999 99999999876543 2 33345666677776666642 344444433
No 145
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.27 E-value=5.1e-11 Score=106.25 Aligned_cols=97 Identities=41% Similarity=0.614 Sum_probs=89.6
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCC-----HHHHHHHHHcCC--CCCCccCCCCCCc
Q psy875 383 PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGH-----TDIVQALVSAGA--DPNDKVQDSAGWL 455 (480)
Q Consensus 383 ~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~Ll~~g~--~~~~~~~~~~g~t 455 (480)
..+.+++|.++..+...++.+++..|++++.++..|.||||+|+..++ .++++.|++.|+ +++. .+|..|.|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~-~~~~~g~t 149 (235)
T COG0666 71 LDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN-LRDEDGNT 149 (235)
T ss_pred ccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcc-ccCCCCCc
Confidence 348899999999999999999999999999999999999999999999 999999999999 3442 45999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 456 PLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 456 pl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
|||+|+..|+.+++.+|++.|++++
T Consensus 150 pl~~A~~~~~~~~~~~ll~~~~~~~ 174 (235)
T COG0666 150 PLHWAALNGDADIVELLLEAGADPN 174 (235)
T ss_pred hhHHHHHcCchHHHHHHHhcCCCCc
Confidence 9999999999999999999999864
No 146
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.24 E-value=1.1e-08 Score=110.41 Aligned_cols=227 Identities=11% Similarity=0.019 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLH-ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
...+...+|.++...|++++|..++++++... .........+...+|.++.. .|++++|..++.+++......+....
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~-~G~~~~A~~~~~~al~~~~~~g~~~~ 529 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC-KGELARALAMMQQTEQMARQHDVYHY 529 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhcchHH
Confidence 45566678999999999999999999999863 22222244566788999544 49999999999999999887777777
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-CcH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NFP 187 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~~ 187 (480)
...++.++|.++...|++++|..++++++..... +....++..+|.++...|++++|...+.+++.+... .+.
T Consensus 530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence 7778899999999999999999999988765332 112445677899999999999999999999988654 233
Q ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH--------------------------------------
Q psy875 188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL-------------------------------------- 229 (480)
Q Consensus 188 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------------------------------- 229 (480)
....++..+|.++...|+ +++|...+.++..+.........
T Consensus 610 ~~~~~~~~la~~~~~~G~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 688 (903)
T PRK04841 610 QQLQCLAMLAKISLARGD-LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH 688 (903)
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch
Confidence 456677889999999999 99999999999876543321100
Q ss_pred -HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q psy875 230 -IRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKL 264 (480)
Q Consensus 230 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~ 264 (480)
.......++.++..+|++++|...++++.......
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~ 724 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSL 724 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 01113467888899999999999999988876443
No 147
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.23 E-value=2.7e-09 Score=103.40 Aligned_cols=213 Identities=9% Similarity=0.031 Sum_probs=148.0
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc---------
Q psy875 42 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD--------- 112 (480)
Q Consensus 42 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~--------- 112 (480)
..+.++...|+++.|+..+++..+. .|....++..++.+ +...|++++|++.+.+..+.....+..
T Consensus 158 ~~a~l~l~~~~~~~Al~~l~~l~~~----~P~~~~~l~ll~~~-~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~ 232 (409)
T TIGR00540 158 ARTRILLAQNELHAARHGVDKLLEM----APRHKEVLKLAEEA-YIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE 232 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3477777778888888887777777 45445666778888 455599998888877766431110000
Q ss_pred -----------------------h----HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh
Q psy875 113 -----------------------K----LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN 165 (480)
Q Consensus 113 -----------------------~----~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~ 165 (480)
+ ....++..++..+...|++++|++.++++++..++........-........
T Consensus 233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC
Confidence 0 1234455788889999999999999999998776644221112233444556
Q ss_pred ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Q psy875 166 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD 245 (480)
Q Consensus 166 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (480)
++.+.+++.++++++..++++. +.....+|.+++..|+ +++|.++|+++..... .+... .+..++.++.++|
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~--~~ll~sLg~l~~~~~~-~~~A~~~le~a~a~~~----~p~~~-~~~~La~ll~~~g 384 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPK--CCINRALGQLLMKHGE-FIEAADAFKNVAACKE----QLDAN-DLAMAADAFDQAG 384 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHccc-HHHHHHHHHHhHHhhc----CCCHH-HHHHHHHHHHHcC
Confidence 7888899999888887443321 3678899999999999 9999999996443321 12122 2448899999999
Q ss_pred ChHHHHHHHHHHHHHHHhhccC
Q psy875 246 KFTELEQIKTELKSLEEKLDLN 267 (480)
Q Consensus 246 ~~~~A~~~~~~~~~l~~~~~~~ 267 (480)
+.++|.++++++..+.-.+...
T Consensus 385 ~~~~A~~~~~~~l~~~~~~~~~ 406 (409)
T TIGR00540 385 DKAEAAAMRQDSLGLMLAIQDN 406 (409)
T ss_pred CHHHHHHHHHHHHHHHhccccc
Confidence 9999999999998877665543
No 148
>KOG0624|consensus
Probab=99.23 E-value=5e-09 Score=92.39 Aligned_cols=208 Identities=11% Similarity=0.080 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
+.-++.+|.-+...|++..|+..|..|++. .|....+++..|.+|... |.-.-|+.-+.+.+++.+ ...
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAm-Gksk~al~Dl~rVlelKp------DF~ 106 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAM-GKSKAALQDLSRVLELKP------DFM 106 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhh-cCCccchhhHHHHHhcCc------cHH
Confidence 455788999999999999999999999999 788888899999996666 999999999999998743 345
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH-------------HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL-------------ASCYISLAQTYKDNKQYNLAVDYFNKELRLHA 183 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~-------------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~ 183 (480)
-+-...|.+++++|++++|+.-|...++..+.... ...+......+...|++..|+++....+++
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-- 184 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-- 184 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--
Confidence 56678899999999999999999999977764211 122334456667779999999999999998
Q ss_pred cCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHH------------
Q psy875 184 RNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELE------------ 251 (480)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------------ 251 (480)
.+.-+..+...+.+|...|+ ..+|+.-++.+-++.. ...+.++.++.++...|+.+.++
T Consensus 185 --~~Wda~l~~~Rakc~i~~~e-~k~AI~Dlk~askLs~------DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 185 --QPWDASLRQARAKCYIAEGE-PKKAIHDLKQASKLSQ------DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred --CcchhHHHHHHHHHHHhcCc-HHHHHHHHHHHHhccc------cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 67778888899999999999 9999999988876632 22234444555555555544443
Q ss_pred -----HHHHHHHHHHHhhcc
Q psy875 252 -----QIKTELKSLEEKLDL 266 (480)
Q Consensus 252 -----~~~~~~~~l~~~~~~ 266 (480)
..|++..++.+++.+
T Consensus 256 HK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 455555566666655
No 149
>KOG0550|consensus
Probab=99.23 E-value=3.6e-10 Score=101.89 Aligned_cols=178 Identities=19% Similarity=0.076 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc--
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD-- 112 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~-- 112 (480)
....+....+.++...|++++|++.--..+++ .+....++...|.+++.. .+.+.|+.+|++++.+.+...+.
T Consensus 167 ac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl----d~~n~~al~vrg~~~yy~-~~~~ka~~hf~qal~ldpdh~~sk~ 241 (486)
T KOG0550|consen 167 ACFKAKLLKAECLAFLGDYDEAQSEAIDILKL----DATNAEALYVRGLCLYYN-DNADKAINHFQQALRLDPDHQKSKS 241 (486)
T ss_pred hhhHHHHhhhhhhhhcccchhHHHHHHHHHhc----ccchhHHHHhcccccccc-cchHHHHHHHhhhhccChhhhhHHh
Confidence 34556677888899999999999988888877 555666777788887776 89999999999999887654433
Q ss_pred ----hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCc
Q psy875 113 ----KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC--KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF 186 (480)
Q Consensus 113 ----~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~ 186 (480)
+........-|.-..+.|+|.+|.++|..++.+.|. ...+.+|.+.|.+...+|+..+|+.-.++++++ .
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D 317 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----D 317 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----C
Confidence 333456668899999999999999999999999887 455889999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875 187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~ 222 (480)
+....++..-|.++..+++ |++|.+.|++++....
T Consensus 318 ~syikall~ra~c~l~le~-~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 318 SSYIKALLRRANCHLALEK-WEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Confidence 8889999999999999999 9999999999987744
No 150
>KOG4369|consensus
Probab=99.22 E-value=5.2e-12 Score=125.57 Aligned_cols=132 Identities=32% Similarity=0.401 Sum_probs=119.9
Q ss_pred CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q psy875 331 LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP 410 (480)
Q Consensus 331 ~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~ 410 (480)
....+..+.|..||.+||.|+|++|+..|+++..+ |+.|.+||..|+..|+..+|..|+.+.++
T Consensus 752 ~Te~n~~t~LT~acaggh~e~vellv~rganiehr----------------dkkgf~plImaatagh~tvV~~llk~ha~ 815 (2131)
T KOG4369|consen 752 LTEPNIKTNLTSACAGGHREEVELLVVRGANIEHR----------------DKKGFVPLIMAATAGHITVVQDLLKAHAD 815 (2131)
T ss_pred ccCccccccccccccCccHHHHHHHHHhccccccc----------------ccccchhhhhhcccCchHHHHHHHhhhhh
Confidence 34566778899999999999999999999998875 45699999999999999999999999999
Q ss_pred CCC-CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 411 VKV-QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 411 ~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+.. .|..+.|+|-+||..|+.++|++|+.+|++-. .++-...|||.+|...|..+++..|+.+|+.||
T Consensus 816 veaQsdrtkdt~lSlacsggr~~vvelLl~~ganke--hrnvsDytPlsla~Sggy~~iI~~llS~GseIn 884 (2131)
T KOG4369|consen 816 VEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKE--HRNVSDYTPLSLARSGGYTKIIHALLSSGSEIN 884 (2131)
T ss_pred hhhhcccccCceEEEecCCCcchHHHHHHHhhcccc--ccchhhcCchhhhcCcchHHHHHHHhhcccccc
Confidence 865 47889999999999999999999999998777 567788999999999999999999999998875
No 151
>KOG0550|consensus
Probab=99.22 E-value=4.1e-10 Score=101.52 Aligned_cols=217 Identities=13% Similarity=0.108 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC---
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD--- 111 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~--- 111 (480)
.++.-....|..++....|..|+..|..|+++ .++.+..|.+.+.. ++.+++|++|.-..++.+++...-..
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~----~pd~a~yy~nRAa~-~m~~~~~~~a~~dar~~~r~kd~~~k~~~ 121 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM----CPDNASYYSNRAAT-LMMLGRFEEALGDARQSVRLKDGFSKGQL 121 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh----CccchhhhchhHHH-HHHHHhHhhcccchhhheecCCCcccccc
Confidence 44555666777777788888888888888877 33335555555555 44446666665555444433211000
Q ss_pred -------------------------------------------ch----------------------------------H
Q psy875 112 -------------------------------------------DK----------------------------------L 114 (480)
Q Consensus 112 -------------------------------------------~~----------------------------------~ 114 (480)
.+ .
T Consensus 122 r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~ 201 (486)
T KOG0550|consen 122 REGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT 201 (486)
T ss_pred chhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH----------HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL----------ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~----------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
-..+....|.++...++.++|+..|++++...|.... ...+-.-|+-.++.|+|.+|.+.|.++|.+-+.
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 0112224556666677788888888888877776322 233444588889999999999999999999888
Q ss_pred CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875 185 NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
+....+..|.+.|.+...+|+ ..+|+.-++.|+++ .+....++...|.++..++++++|.+.++++.++..+
T Consensus 282 n~~~naklY~nra~v~~rLgr-l~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGR-LREAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ccchhHHHHHHhHhhhcccCC-chhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 878889999999999999999 99999999999998 7888999999999999999999999999999886544
No 152
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.21 E-value=2.7e-09 Score=111.52 Aligned_cols=204 Identities=14% Similarity=0.114 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
..+.++..+|.++...|++++|++.|+++++. .|....++..+|.+ +...|++++|+..+++++...+..
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~-l~~~g~~~eA~~~l~~~l~~~P~~----- 116 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDDYQRGLILT-LADAGQYDEALVKAKQLVSGAPDK----- 116 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCC-----
Confidence 34567999999999999999999999999998 55555667788988 555599999999999999874432
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHH------------------
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFN------------------ 176 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~------------------ 176 (480)
.. +..+|.++...|++++|+..+++++...|.. ..++..+|.++...++.++|+..++
T Consensus 117 -~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~--~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~ 192 (765)
T PRK10049 117 -AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT--QQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAA 192 (765)
T ss_pred -HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 23 6788999999999999999999999877654 3555667777777777766665554
Q ss_pred ----------------------------HHHhhhhcCc---HHHHHHHHH-HHHHHHHhCCchHHHHHHHHHHHHHHHHc
Q psy875 177 ----------------------------KELRLHARNF---PEAVKTLGE-IGDLYELQEKPFELVVSTHEKALDLARQN 224 (480)
Q Consensus 177 ----------------------------~al~~~~~~~---~~~~~~~~~-l~~~~~~~~~~~~~A~~~~~~al~~~~~~ 224 (480)
+.++..+.++ +....+... ++ ++...|+ +++|+..|+++++..
T Consensus 193 ~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~-~~eA~~~~~~ll~~~--- 267 (765)
T PRK10049 193 ELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDR-YKDVISEYQRLKAEG--- 267 (765)
T ss_pred HHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhh-HHHHHHHHHHhhccC---
Confidence 2222211111 112222222 34 3457788 999999999976551
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 225 KDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
...+.. +...++.+|..+|++++|+..++++..
T Consensus 268 ~~~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 268 QIIPPW--AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred CCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 111222 223368899999999999999998764
No 153
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.21 E-value=2.8e-10 Score=92.60 Aligned_cols=109 Identities=13% Similarity=0.146 Sum_probs=94.5
Q ss_pred HHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHH
Q psy875 96 QSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYF 175 (480)
Q Consensus 96 ~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~ 175 (480)
..++++|+++.+. .+..+|.++...|++++|+.+|++++...+ ....++.++|.++...|++++|+..|
T Consensus 13 ~~~~~~al~~~p~---------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVDPE---------TVYASGYASWQEGDYSRAVIDFSWLVMAQP--WSWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHcCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3567888877432 145689999999999999999999997764 45688999999999999999999999
Q ss_pred HHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 176 NKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 176 ~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
++++.+ .|..+..++++|.++...|+ +++|+..|++++.+
T Consensus 82 ~~Al~l----~p~~~~a~~~lg~~l~~~g~-~~eAi~~~~~Al~~ 121 (144)
T PRK15359 82 GHALML----DASHPEPVYQTGVCLKMMGE-PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHhc----CCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence 999998 45567889999999999999 99999999999987
No 154
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.20 E-value=4.3e-10 Score=91.51 Aligned_cols=126 Identities=11% Similarity=-0.000 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHH
Q psy875 57 VDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSAC 136 (480)
Q Consensus 57 ~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~ 136 (480)
..++++++++ .|.. +...|.+ ....|++++|+.+|++++.+.+. ...++.++|.++..+|++++|+
T Consensus 13 ~~~~~~al~~----~p~~---~~~~g~~-~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~ 78 (144)
T PRK15359 13 EDILKQLLSV----DPET---VYASGYA-SWQEGDYSRAVIDFSWLVMAQPW------SWRAHIALAGTWMMLKEYTTAI 78 (144)
T ss_pred HHHHHHHHHc----CHHH---HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHH
Confidence 3577888887 4443 4467888 44559999999999999877432 3677889999999999999999
Q ss_pred HHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHH
Q psy875 137 SELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL 202 (480)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~ 202 (480)
..|++++...+ ....+++++|.++..+|++++|+..|++++++.+ ..+..+.+.|.+...
T Consensus 79 ~~y~~Al~l~p--~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p----~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 79 NFYGHALMLDA--SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY----ADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHhcCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHH
Confidence 99999997664 4558899999999999999999999999999843 334555555555443
No 155
>PLN02789 farnesyltranstransferase
Probab=99.20 E-value=4.1e-09 Score=97.04 Aligned_cols=202 Identities=11% Similarity=0.013 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhhhcCCCc
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK-SFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
+....++-.+-.++...+.+++|+..+.+++++ .|....+|...|.+ ...++ ++++++..+.+++...++.
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~l----nP~~ytaW~~R~~i-L~~L~~~l~eeL~~~~~~i~~npkn--- 105 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRL----NPGNYTVWHFRRLC-LEALDADLEEELDFAEDVAEDNPKN--- 105 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHH-HHHcchhHHHHHHHHHHHHHHCCcc---
Confidence 344556656666677889999999999999999 88888899999999 45556 6899999999999875433
Q ss_pred hHHHHHHHHHHHHHHhcCCh--HHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNL--DSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAV 190 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~--~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 190 (480)
..++...+.++..+|+. ++++.++.+++...++ ...++...+.++...|+|++|++++.++++. .+...
T Consensus 106 ---yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk--Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~----d~~N~ 176 (320)
T PLN02789 106 ---YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK--NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE----DVRNN 176 (320)
T ss_pred ---hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----CCCch
Confidence 34678888888888874 7889999999977654 4578899999999999999999999999998 34446
Q ss_pred HHHHHHHHHHHHh---CCch----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q psy875 191 KTLGEIGDLYELQ---EKPF----ELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK----HDKFTELEQIKTELKS 259 (480)
Q Consensus 191 ~~~~~l~~~~~~~---~~~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 259 (480)
.+|...+.+.... |. + ++++.+..+++.+ .+.-..++..++.++.. +++..+|.....++..
T Consensus 177 sAW~~R~~vl~~~~~l~~-~~~~~e~el~y~~~aI~~------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 177 SAWNQRYFVITRSPLLGG-LEAMRDSELKYTIDAILA------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred hHHHHHHHHHHhcccccc-ccccHHHHHHHHHHHHHh------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 7888888887765 33 3 4677888888877 33444566677777776 3455667666655433
No 156
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.18 E-value=2.4e-09 Score=103.18 Aligned_cols=196 Identities=9% Similarity=0.051 Sum_probs=129.5
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC------------
Q psy875 44 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD------------ 111 (480)
Q Consensus 44 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~------------ 111 (480)
+.++...|++++|+..+++..+. .|....++..++.+| ...|++++|+..+.+..+.....+.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~----~P~~~~al~ll~~~~-~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEV----APRHPEVLRLAEQAY-IRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 56666666666666666666666 344444555666663 3347777777555544422111000
Q ss_pred ------------------------chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc
Q psy875 112 ------------------------DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ 167 (480)
Q Consensus 112 ------------------------~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~ 167 (480)
.+....+...++..+...|+.++|...+++++...+++.....+. ....++
T Consensus 235 l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~-----~l~~~~ 309 (398)
T PRK10747 235 LMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIP-----RLKTNN 309 (398)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHh-----hccCCC
Confidence 011122344667777888888888888887776444333222221 123477
Q ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q psy875 168 YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKF 247 (480)
Q Consensus 168 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (480)
++++++.+++.++. +|..+..+..+|.++...++ +++|.++|+++++. .|. ...+..++.++.++|+.
T Consensus 310 ~~~al~~~e~~lk~----~P~~~~l~l~lgrl~~~~~~-~~~A~~~le~al~~------~P~-~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 310 PEQLEKVLRQQIKQ----HGDTPLLWSTLGQLLMKHGE-WQEASLAFRAALKQ------RPD-AYDYAWLADALDRLHKP 377 (398)
T ss_pred hHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc------CCC-HHHHHHHHHHHHHcCCH
Confidence 88888888777766 44556788899999999999 99999999999876 222 23456899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy875 248 TELEQIKTELKSLE 261 (480)
Q Consensus 248 ~~A~~~~~~~~~l~ 261 (480)
++|.++++++..+.
T Consensus 378 ~~A~~~~~~~l~~~ 391 (398)
T PRK10747 378 EEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887754
No 157
>KOG1174|consensus
Probab=99.16 E-value=1.1e-09 Score=98.79 Aligned_cols=199 Identities=14% Similarity=0.122 Sum_probs=156.2
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT 117 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~ 117 (480)
.-++.-|...+..++|..|+.+-.|++.. .+....++..-|.+ ....++.++|.-.|+.|..+. +.-..
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~----~~r~~~alilKG~l-L~~~~R~~~A~IaFR~Aq~La------p~rL~ 369 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDS----EPRNHEALILKGRL-LIALERHTQAVIAFRTAQMLA------PYRLE 369 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhcc----CcccchHHHhccHH-HHhccchHHHHHHHHHHHhcc------hhhHH
Confidence 34566677788888999999999999988 55556667777888 777799999999999998774 33467
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHH-HHHHhh-ccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA-QTYKDN-KQYNLAVDYFNKELRLHARNFPEAVKTLGE 195 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la-~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 195 (480)
+|..|-..|...|++.+|...-..+.... +..+.++..+| .++... ---++|.+++++++++ .|....+-..
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~----~P~Y~~AV~~ 443 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI----NPIYTPAVNL 443 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc----CCccHHHHHH
Confidence 88899999999999999998888766444 33345566665 444433 3357899999999988 6667777888
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
+|.++...|+ +++++..+++++.... -......||++....+.+++|+.+|..+.++.
T Consensus 444 ~AEL~~~Eg~-~~D~i~LLe~~L~~~~-------D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 444 IAELCQVEGP-TKDIIKLLEKHLIIFP-------DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhhCc-cchHHHHHHHHHhhcc-------ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999999999 9999999999987632 12345689999999999999999999998764
No 158
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.15 E-value=1.7e-08 Score=96.43 Aligned_cols=224 Identities=11% Similarity=-0.021 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
....+...+|.++...|++++|+..+++++++ .+.....+..+|.+|+.. |++++|+.++++++...+. ++..
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~p~~~~~~~~la~i~~~~-g~~~eA~~~l~~~l~~~~~--~~~~ 184 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALEL----NPDDAWAVHAVAHVLEMQ-GRFKEGIAFMESWRDTWDC--SSML 184 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHc-CCHHHHHHHHHhhhhccCC--Ccch
Confidence 33456667778888888888888888888887 444456667778885444 8888888888888876543 1222
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHH--HHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYI--SLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEA 189 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~--~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~ 189 (480)
....+..+|.++...|++++|+..|++++...+. ......+. .+...+...|....+..+ +........ ..+..
T Consensus 185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~ 263 (355)
T cd05804 185 RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGL 263 (355)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccc
Confidence 3345667888888888888888888877644431 11111111 112222222322222222 111111000 00111
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ---NKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~ 266 (480)
.......+.++...|+ .++|...+.......+. .+.......+....+.++..+|++++|...+.++..+...+++
T Consensus 264 ~~~~~~~a~~~~~~~~-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~gg 342 (355)
T cd05804 264 AFNDLHAALALAGAGD-KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGG 342 (355)
T ss_pred hHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 2222357888888999 99999999988877766 4445556677778899999999999999999999999988877
Q ss_pred C
Q psy875 267 N 267 (480)
Q Consensus 267 ~ 267 (480)
.
T Consensus 343 s 343 (355)
T cd05804 343 S 343 (355)
T ss_pred c
Confidence 3
No 159
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.13 E-value=4.2e-09 Score=90.48 Aligned_cols=121 Identities=19% Similarity=0.171 Sum_probs=55.9
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH-HHhhcc-
Q psy875 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT-YKDNKQ- 167 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~-y~~~~~- 167 (480)
++.++++..++++++..+.. ...+..+|.+|...|++++|+..|++++...++ ...++..+|.+ |...|+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~--~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQN------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGE--NAELYAALATVLYYQAGQH 124 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCC
Confidence 33444444454444442211 234445555555555555555555555544322 22444445543 234344
Q ss_pred -HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875 168 -YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ 223 (480)
Q Consensus 168 -~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 223 (480)
+++|...++++++. .+....++..+|.+++..|+ |++|+.+++++++....
T Consensus 125 ~~~~A~~~l~~al~~----dP~~~~al~~LA~~~~~~g~-~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 125 MTPQTREMIDKALAL----DANEVTALMLLASDAFMQAD-YAQAIELWQKVLDLNSP 176 (198)
T ss_pred CcHHHHHHHHHHHHh----CCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCC
Confidence 25555555555554 22333444555555555555 55555555555544433
No 160
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.10 E-value=9.3e-09 Score=106.03 Aligned_cols=199 Identities=11% Similarity=0.073 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
..+...+..+.+.++.|+++.|+..|+++++. .|........+..+ +...|++++|+.++++++ .+. +.
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~----~P~~~~av~dll~l-~~~~G~~~~A~~~~eka~--~p~----n~ 100 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKA----GPLQSGQVDDWLQI-AGWAGRDQEVIDVYERYQ--SSM----NI 100 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhh----CccchhhHHHHHHH-HHHcCCcHHHHHHHHHhc--cCC----CC
Confidence 35667888999999999999999999999998 33332111266666 344499999999999998 111 11
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
....+..+|.+|..+|+|++|++.|++++...|.. ..++..++.+|.+.+++++|++.++++...... ...+.
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n--~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-----~~~~l 173 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTN--PDLISGMIMTQADAGRGGVVLKQATELAERDPT-----VQNYM 173 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-----hHHHH
Confidence 13345566889999999999999999999888765 466678899999999999999999998877332 22234
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875 195 EIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK 258 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 258 (480)
.++.++...++ +.+|+..++++++. .|....++..+..+....|-...|.+..++.-
T Consensus 174 ~layL~~~~~~-~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 174 TLSYLNRATDR-NYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHHHHhcch-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 45556655677 76799999999887 45556667777788888898888887776543
No 161
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.09 E-value=1e-08 Score=103.81 Aligned_cols=166 Identities=10% Similarity=0.030 Sum_probs=128.9
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875 41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR 120 (480)
Q Consensus 41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~ 120 (480)
-.+-.+....+...++...+-+++.+ ..+.+....++.++|.+ ....|.+++|+..++.++++.+.. ..+..
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~La~i-~~~~g~~~ea~~~l~~~~~~~Pd~------~~a~~ 124 (694)
T PRK15179 53 QQARQVLERHAAVHKPAAALPELLDY-VRRYPHTELFQVLVARA-LEAAHRSDEGLAVWRGIHQRFPDS------SEAFI 124 (694)
T ss_pred HHHHHHHHHhhhhcchHhhHHHHHHH-HHhccccHHHHHHHHHH-HHHcCCcHHHHHHHHHHHhhCCCc------HHHHH
Confidence 33444555556666666666666666 55566667888888888 777799999999999888886533 56777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY 200 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 200 (480)
+++.+..+++++++|+..+++++...+ +.+..++.+|.++.++|+|++|+.+|++++.- .+....++..+|.++
T Consensus 125 ~~a~~L~~~~~~eeA~~~~~~~l~~~p--~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~----~p~~~~~~~~~a~~l 198 (694)
T PRK15179 125 LMLRGVKRQQGIEAGRAEIELYFSGGS--SSAREILLEAKSWDEIGQSEQADACFERLSRQ----HPEFENGYVGWAQSL 198 (694)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc----CCCcHHHHHHHHHHH
Confidence 888899999999999999998886664 44577888899999999999999999988873 345567888889999
Q ss_pred HHhCCchHHHHHHHHHHHHHH
Q psy875 201 ELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~ 221 (480)
...|+ .++|...|++|++..
T Consensus 199 ~~~G~-~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 199 TRRGA-LWRARDVLQAGLDAI 218 (694)
T ss_pred HHcCC-HHHHHHHHHHHHHhh
Confidence 99999 899999999988764
No 162
>PLN02789 farnesyltranstransferase
Probab=99.09 E-value=1.7e-08 Score=92.94 Aligned_cols=190 Identities=11% Similarity=0.006 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHhhh
Q psy875 31 DLCKDLASCYISLAQTYKDNK-QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSF--EIVQSTHEKALDLAR 107 (480)
Q Consensus 31 ~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~--~~A~~~~~kAl~~~~ 107 (480)
...+.-..++...|.++...| ++++++.++.++++. .+....+|+..+.+ ...++.. ++++.++.++++...
T Consensus 65 ~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~----npknyqaW~~R~~~-l~~l~~~~~~~el~~~~kal~~dp 139 (320)
T PLN02789 65 RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED----NPKNYQIWHHRRWL-AEKLGPDAANKELEFTRKILSLDA 139 (320)
T ss_pred HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH----CCcchHHhHHHHHH-HHHcCchhhHHHHHHHHHHHHhCc
Confidence 344455678889999998888 689999999999998 66667778888888 4444653 778999999998754
Q ss_pred cCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh---ccH----HHHHHHHHHHHh
Q psy875 108 QNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN---KQY----NLAVDYFNKELR 180 (480)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~---~~~----~~A~~~~~~al~ 180 (480)
+. ..++...+.++..+|++++|++++.+++...+.. ..+++..+.+.... |.+ +++++|..+++.
T Consensus 140 kN------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N--~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~ 211 (320)
T PLN02789 140 KN------YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN--NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL 211 (320)
T ss_pred cc------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc--hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH
Confidence 33 5688899999999999999999999999877554 36777888777665 333 578999999999
Q ss_pred hhhcCcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy875 181 LHARNFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH 244 (480)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (480)
+ .|....+|..++.++.. .++ +.+|...+.+++.. .+.-..++..|+++|...
T Consensus 212 ~----~P~N~SaW~Yl~~ll~~~~~~l~~-~~~~~~~~~~~~~~------~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 212 A----NPRNESPWRYLRGLFKDDKEALVS-DPEVSSVCLEVLSK------DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred h----CCCCcCHHHHHHHHHhcCCccccc-chhHHHHHHHhhcc------cCCcHHHHHHHHHHHHhh
Confidence 8 44446788889998887 455 67788888776652 223345677788888753
No 163
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.08 E-value=6.7e-10 Score=80.19 Aligned_cols=72 Identities=31% Similarity=0.589 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 150 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~ 222 (480)
.++.++.++|.+|..+|+|++|+++|++++++... +++..+.++.++|.++..+|+ +++|++++++++++.+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD-YEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhc
Confidence 45667777788888778888888888877777332 234557777788888888888 8888888888777754
No 164
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.08 E-value=5.8e-09 Score=89.64 Aligned_cols=121 Identities=12% Similarity=0.133 Sum_probs=104.4
Q ss_pred hcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH-HHhCCc
Q psy875 128 KHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY-ELQEKP 206 (480)
Q Consensus 128 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 206 (480)
..++.++++..+++++...+ .....+..+|.+|...|++++|+..|++++++ .+....++..+|.++ ...|+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P--~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l----~P~~~~~~~~lA~aL~~~~g~- 123 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANP--QNSEQWALLGEYYLWRNDYDNALLAYRQALQL----RGENAELYAALATVLYYQAGQ- 123 (198)
T ss_pred CchhHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCC-
Confidence 36788999999999997664 44578999999999999999999999999999 455578889999975 56666
Q ss_pred h--HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 207 F--ELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 207 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
+ ++|...++++++. .+....++..+|..+..+|++++|..+++++.++.
T Consensus 124 ~~~~~A~~~l~~al~~------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 124 HMTPQTREMIDKALAL------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred CCcHHHHHHHHHHHHh------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4 9999999999988 45566789999999999999999999999998765
No 165
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.08 E-value=3.1e-08 Score=85.82 Aligned_cols=169 Identities=18% Similarity=0.161 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
.....++..|..++..|+|.+|++.|++.+.. -+..+....+...+|.+|+.. |+|+.|+..+++-+...+.. +.
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-~P~s~~a~~A~l~la~a~y~~-~~y~~A~~~~~~fi~~yP~~---~~ 77 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDR-YPNSPYAPQAQLMLAYAYYKQ-GDYEEAIAAYERFIKLYPNS---PK 77 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHH-TT----TT
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCC---cc
Confidence 34678899999999999999999999999988 566677778889999997666 99999999999999887654 44
Q ss_pred HHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhcccccc---------------cHHHHHHHHHHHHHhhccH
Q psy875 115 IRTVMRSIKKLYKKH-----------DNLDSACSELHTVLSSDLCK---------------DLASCYISLAQTYKDNKQY 168 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~-----------~~~~~A~~~~~~~l~~~~~~---------------~~~~~~~~la~~y~~~~~~ 168 (480)
...++..+|.++..+ +...+|+..|+..+...|+. .++.--..+|..|.+.|.|
T Consensus 78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 556777777776544 34568999999888777662 2233445579999999999
Q ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHH
Q psy875 169 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELV 210 (480)
Q Consensus 169 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 210 (480)
..|+..++..++..++ .+....++..++..|..+|. .+.|
T Consensus 158 ~aA~~r~~~v~~~yp~-t~~~~~al~~l~~~y~~l~~-~~~a 197 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPD-TPAAEEALARLAEAYYKLGL-KQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHhCC-hHHH
Confidence 9999999999998776 45566789999999999999 6643
No 166
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.08 E-value=5.1e-09 Score=105.92 Aligned_cols=140 Identities=9% Similarity=0.048 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~ 111 (480)
.|...+.++++||.+....|.+++|...++.++++ .|+...+..+++.+ ..+.+.+++|+..+++++...+..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~-L~~~~~~eeA~~~~~~~l~~~p~~-- 153 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRG-VKRQQGIEAGRAEIELYFSGGSSS-- 153 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHH-HHHhccHHHHHHHHHHHhhcCCCC--
Confidence 34456889999999999999999999999999999 78888888999999 666699999999999999885543
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
+.++..+|.++..+|++++|+.+|++++. +.+....++.++|..+...|+.++|...|+++++....
T Consensus 154 ----~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 154 ----AREILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred ----HHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 67788999999999999999999999997 44566789999999999999999999999999998554
No 167
>KOG2076|consensus
Probab=99.04 E-value=6.2e-08 Score=95.97 Aligned_cols=205 Identities=12% Similarity=0.095 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
.+.+...|+..+.+|++++|++.+.++++. .+....+|..+|.+ +.+.|+.+++......|-.+.++..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq----dp~~~~ay~tL~~I-yEqrGd~eK~l~~~llAAHL~p~d~------ 207 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ----DPRNPIAYYTLGEI-YEQRGDIEKALNFWLLAAHLNPKDY------ 207 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CccchhhHHHHHHH-HHHcccHHHHHHHHHHHHhcCCCCh------
Confidence 456777788888889999999999999999 77778889999999 5555999999999988887755432
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHH-HHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE-AVKTLGE 195 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~ 195 (480)
..+..++....++|.+.+|.-||.++++..|.. ...+...+.+|.++|++..|...|.+.+...+..... ....-..
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n--~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSN--WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 456788999999999999999999999877654 4677889999999999999999999999985532222 2233345
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
.+..+...++ -+.|.+.++.++..- ....-...+..++.++.+...++.|.........
T Consensus 286 ~~~~~~~~~~-~e~a~~~le~~~s~~----~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 286 VAHYFITHNE-RERAAKALEGALSKE----KDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHhhc----cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 5778888888 688999998888721 1222234455788999999999999877655444
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.04 E-value=9.1e-09 Score=86.58 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=94.7
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHhhccH
Q psy875 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-DLASCYISLAQTYKDNKQY 168 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~la~~y~~~~~~ 168 (480)
..|..+...+.+-++ .......+.++.++|.++..+|++++|+..|++++...+++ ..+.++.++|.+|...|++
T Consensus 13 ~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 13 KTFTIVADILLRILP----TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccchhhhhHhcc----CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 345555555533322 22334467888999999999999999999999998776543 3467899999999999999
Q ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHH-------HhCCchHHHHHHHHHHHHHHHHc
Q psy875 169 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE-------LQEKPFELVVSTHEKALDLARQN 224 (480)
Q Consensus 169 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~A~~~~~~al~~~~~~ 224 (480)
++|+.++++++.+.+. ....+.++|.++. .+|+ ++.|...+.+++...++.
T Consensus 89 ~eA~~~~~~Al~~~~~----~~~~~~~la~i~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 89 TKALEYYFQALERNPF----LPQALNNMAVICHYRGEQAIEQGD-SEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred HHHHHHHHHHHHhCcC----cHHHHHHHHHHHHHhhHHHHHccc-HHHHHHHHHHHHHHHHHH
Confidence 9999999999988333 2344445555555 8999 999999999998876543
No 169
>KOG0553|consensus
Probab=99.03 E-value=4.5e-09 Score=91.62 Aligned_cols=102 Identities=24% Similarity=0.311 Sum_probs=93.5
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 191 (480)
...++.-+.+-|.-..+.++|++|+..|.+|++..|. -+..|.+.|.+|.++|.|+.|++-++.|+.+ .+....
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i----Dp~ysk 150 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSI----DPHYSK 150 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhc----ChHHHH
Confidence 4556677788999999999999999999999987754 4577999999999999999999999999999 889999
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
+|..||.+|..+|+ |++|++.|++|+++
T Consensus 151 ay~RLG~A~~~~gk-~~~A~~aykKaLel 178 (304)
T KOG0553|consen 151 AYGRLGLAYLALGK-YEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHHHccCc-HHHHHHHHHhhhcc
Confidence 99999999999999 99999999999988
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.03 E-value=5.9e-08 Score=86.14 Aligned_cols=173 Identities=13% Similarity=0.067 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
.....+..|..+...|+|++|++.|++.+.. .+..+....+...+|.+|+.. ++|++|+.++++.++..+.. +..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-yP~s~~a~~a~l~la~ayy~~-~~y~~A~~~~e~fi~~~P~~---~~~ 105 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLNPTH---PNI 105 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCcCC---Cch
Confidence 4556888999999999999999999999998 555666667788999996666 99999999999999987654 455
Q ss_pred HHHHHHHHHHHHhcC---------------C---hHHHHHHHHHHhccccccc---------------HHHHHHHHHHHH
Q psy875 116 RTVMRSIKKLYKKHD---------------N---LDSACSELHTVLSSDLCKD---------------LASCYISLAQTY 162 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~---------------~---~~~A~~~~~~~l~~~~~~~---------------~~~~~~~la~~y 162 (480)
..+++.+|.++..++ + -.+|+..|++.+...|+.. ++.--..+|..|
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y 185 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYY 185 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788887764443 1 3468888888887777622 233344579999
Q ss_pred HhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy875 163 KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHE 215 (480)
Q Consensus 163 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 215 (480)
.+.|.|..|+.-++..++-.++ .+....++..++.+|...|. .++|..+..
T Consensus 186 ~~~~~y~AA~~r~~~v~~~Yp~-t~~~~eal~~l~~ay~~lg~-~~~a~~~~~ 236 (243)
T PRK10866 186 TKRGAYVAVVNRVEQMLRDYPD-TQATRDALPLMENAYRQLQL-NAQADKVAK 236 (243)
T ss_pred HHcCchHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHcCC-hHHHHHHHH
Confidence 9999999999999999988766 45577889999999999999 888876553
No 171
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.01 E-value=1.2e-07 Score=92.02 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 232 TVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 232 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
.....+|.++.+.|++++|.++++++..
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 5666899999999999999999996444
No 172
>KOG4162|consensus
Probab=99.00 E-value=1e-07 Score=92.87 Aligned_cols=212 Identities=22% Similarity=0.188 Sum_probs=164.5
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC-------
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK------- 110 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~------- 110 (480)
.+.++++.-|..+++.+.|+.+.++++++ +..+.+.+|..++.+...+ +++..|+....-|++....+.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l---~~~~~~~~whLLALvlSa~-kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALAL---NRGDSAKAWHLLALVLSAQ-KRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 67899999999999999999999999998 2334566778888884444 888888888877776544300
Q ss_pred -------Cc-----------------------------------------------------------------------
Q psy875 111 -------DD----------------------------------------------------------------------- 112 (480)
Q Consensus 111 -------~~----------------------------------------------------------------------- 112 (480)
+.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 00
Q ss_pred ------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875 113 ------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR 180 (480)
Q Consensus 113 ------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~ 180 (480)
......+...+..+...+..++|..++.++-.+. +..+..|+..|.++...|++.+|.+.|..|+.
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 0000111255666777777777777777776555 45567888899999999999999999999999
Q ss_pred hhhcCcHHHHHHHHHHHHHHHHhCCchHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875 181 LHARNFPEAVKTLGEIGDLYELQEKPFELVVS--THEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK 258 (480)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 258 (480)
+ .|....+...+|.++.+.|+ ..-|.. .+..++++ .+...++++.+|.++.++|+.+.|-+.|+-+.
T Consensus 713 l----dP~hv~s~~Ala~~lle~G~-~~la~~~~~L~dalr~------dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 713 L----DPDHVPSMTALAELLLELGS-PRLAEKRSLLSDALRL------DPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred c----CCCCcHHHHHHHHHHHHhCC-cchHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 8 55556778889999999998 777777 88888887 77788899999999999999999999999999
Q ss_pred HHHHhhcc
Q psy875 259 SLEEKLDL 266 (480)
Q Consensus 259 ~l~~~~~~ 266 (480)
++.++...
T Consensus 782 qLe~S~PV 789 (799)
T KOG4162|consen 782 QLEESNPV 789 (799)
T ss_pred hhccCCCc
Confidence 98776433
No 173
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.00 E-value=4e-08 Score=100.41 Aligned_cols=143 Identities=16% Similarity=0.178 Sum_probs=118.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875 29 SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ 108 (480)
Q Consensus 29 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~ 108 (480)
..+..+....++..|...|...+++++|+..+..+++. .|.....|+..|.+|+.. +++..|... .++.+...
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~----~P~~i~~yy~~G~l~~q~-~~~~~~~lv--~~l~~~~~ 95 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE----HKKSISALYISGILSLSR-RPLNDSNLL--NLIDSFSQ 95 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCcceehHHHHHHHHHhh-cchhhhhhh--hhhhhccc
Confidence 34455567788999999999999999999999999998 788888888999985555 888888665 66666554
Q ss_pred CCCc-------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHH
Q psy875 109 NKDD-------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYF 175 (480)
Q Consensus 109 ~~~~-------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~ 175 (480)
..+. .....++..+|.+|.++|++++|...|++++... +.-+.+++++|..|... +.++|++++
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4321 2222577899999999999999999999999887 45568899999999999 999999999
Q ss_pred HHHHhh
Q psy875 176 NKELRL 181 (480)
Q Consensus 176 ~~al~~ 181 (480)
.+|+..
T Consensus 173 ~KAV~~ 178 (906)
T PRK14720 173 KKAIYR 178 (906)
T ss_pred HHHHHH
Confidence 999877
No 174
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.00 E-value=1e-07 Score=101.32 Aligned_cols=131 Identities=9% Similarity=0.087 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG 197 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~ 197 (480)
+|..+...|.+.|++++|+..|.+.....-.|+ ..+|..+...|.+.|++++|.+++++..+.- ......+|..+.
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G---~~pd~~tynsLI 691 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQG---IKLGTVSYSSLM 691 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHH
Confidence 445555555555555555555555443322222 2345555566666666666666665554331 111134566666
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875 198 DLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK 258 (480)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 258 (480)
..|.+.|+ +++|...|++..+. +-.+ -...+..|...|.+.|++++|.++++++.
T Consensus 692 ~ay~k~G~-~eeA~~lf~eM~~~----g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 692 GACSNAKN-WKKALELYEDIKSI----KLRP-TVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHhCCC-HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66667777 77776666654321 1111 12446666777777777777777776654
No 175
>KOG0553|consensus
Probab=98.99 E-value=1.3e-08 Score=88.77 Aligned_cols=116 Identities=18% Similarity=0.251 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHH
Q psy875 76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY 155 (480)
Q Consensus 76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (480)
..+-.-|.- .+..++|.+|+..|.+|+.+.+.. +..|.+.+.+|.++|+|+.|++-++.++.++ +....+|
T Consensus 82 E~LK~eGN~-~m~~~~Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay 152 (304)
T KOG0553|consen 82 ESLKNEGNK-LMKNKDYQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAY 152 (304)
T ss_pred HHHHHHHHH-HHHhhhHHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHH
Confidence 333444666 555588999999999998885433 5677888899999999999999998888776 4566888
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC
Q psy875 156 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE 204 (480)
Q Consensus 156 ~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (480)
..||.+|..+|+|++|++.|++++++-+.+ .....+|..+-.+++
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLeldP~N----e~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALELDPDN----ESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhccCCCc----HHHHHHHHHHHHHhc
Confidence 889999999999999999999998884433 344555554444443
No 176
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.98 E-value=8.8e-09 Score=74.28 Aligned_cols=77 Identities=18% Similarity=0.315 Sum_probs=68.0
Q ss_pred cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875 186 FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK-LIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 186 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
+|..+.++.++|.+|..+|+ |++|+.+|++++++.+..++.. ....++.++|.++..+|++++|+++++++.++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGR-YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 46778899999999999999 9999999999999977777554 56999999999999999999999999999988653
No 177
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.98 E-value=1.4e-07 Score=91.09 Aligned_cols=192 Identities=11% Similarity=0.069 Sum_probs=100.1
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhccCchHH-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHH
Q psy875 44 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAV-KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSI 122 (480)
Q Consensus 44 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l 122 (480)
+.+...+|+++.|..++.++.+. .++.. ......+.++ ...|++++|+..+++..+..+.. ..++..+
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~----~~~~~~~~~l~~a~l~-l~~g~~~~Al~~l~~~~~~~P~~------~~al~ll 193 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAEL----ADNDQLPVEITRVRIQ-LARNENHAARHGVDKLLEVAPRH------PEVLRLA 193 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc----CCcchHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCC------HHHHHHH
Confidence 44445666666666666666554 22211 1111225553 33366666666666665554322 2344555
Q ss_pred HHHHHhcCChHHHHHHHHHHhccccc----------------------------------------ccHHHHHHHHHHHH
Q psy875 123 KKLYKKHDNLDSACSELHTVLSSDLC----------------------------------------KDLASCYISLAQTY 162 (480)
Q Consensus 123 ~~~y~~~~~~~~A~~~~~~~l~~~~~----------------------------------------~~~~~~~~~la~~y 162 (480)
+.+|...|++++|+..+.+..+.... +....+...+|..+
T Consensus 194 ~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l 273 (398)
T PRK10747 194 EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHL 273 (398)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHH
Confidence 66666666666666544422211000 11122344445555
Q ss_pred HhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy875 163 KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYK 242 (480)
Q Consensus 163 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 242 (480)
...|+.++|...++++++. ...+.....+ +. ...++ +++++..+++.++. .|.-...+..+|.++.
T Consensus 274 ~~~g~~~~A~~~L~~~l~~--~~~~~l~~l~---~~--l~~~~-~~~al~~~e~~lk~------~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKR--QYDERLVLLI---PR--LKTNN-PEQLEKVLRQQIKQ------HGDTPLLWSTLGQLLM 339 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCCHHHHHHH---hh--ccCCC-hHHHHHHHHHHHhh------CCCCHHHHHHHHHHHH
Confidence 5666666666666555552 1111111111 11 12244 55555555554422 2333456778899999
Q ss_pred HcCChHHHHHHHHHHHHH
Q psy875 243 KHDKFTELEQIKTELKSL 260 (480)
Q Consensus 243 ~~g~~~~A~~~~~~~~~l 260 (480)
..+++++|..+++++.+.
T Consensus 340 ~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HCCCHHHHHHHHHHHHhc
Confidence 999999999999998775
No 178
>KOG0624|consensus
Probab=98.97 E-value=1.4e-07 Score=83.39 Aligned_cols=205 Identities=14% Similarity=0.147 Sum_probs=165.1
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT 117 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~ 117 (480)
+........++..|++..|+++....+++ .+..+..+...+.+| ...|+...|+.-++.|-++.... ..
T Consensus 156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi----~~Wda~l~~~Rakc~-i~~~e~k~AI~Dlk~askLs~Dn------Te 224 (504)
T KOG0624|consen 156 WVLVQQLKSASGSGDCQNAIEMITHLLEI----QPWDASLRQARAKCY-IAEGEPKKAIHDLKQASKLSQDN------TE 224 (504)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhc----CcchhHHHHHHHHHH-HhcCcHHHHHHHHHHHHhccccc------hH
Confidence 34455556677789999999999999999 888888888889995 44499999999999988876543 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHH-HHHHHH---------HHHHHhhccHHHHHHHHHHHHhhhhcCcH
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA-SCYISL---------AQTYKDNKQYNLAVDYFNKELRLHARNFP 187 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~~~l---------a~~y~~~~~~~~A~~~~~~al~~~~~~~~ 187 (480)
.++.++.+++..|+.+.++...++.++..|+...- ..|-.+ +.-..+.++|.++++-.++.++.-+...+
T Consensus 225 ~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ 304 (504)
T KOG0624|consen 225 GHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM 304 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc
Confidence 57789999999999999999999999888874331 122222 34455678888888888888877444455
Q ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 188 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
........+..++...++ +-+|+..+.+++.+ .+.-..++...+..|..-..|+.|+.-|+.+.++
T Consensus 305 ir~~~~r~~c~C~~~d~~-~~eAiqqC~evL~~------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQ-FGEAIQQCKEVLDI------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eeeeeeheeeecccccCC-HHHHHHHHHHHHhc------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 556677788999999999 99999999999987 6777889999999999999999999999988764
No 179
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.96 E-value=5.6e-08 Score=83.24 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=127.0
Q ss_pred CchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc
Q psy875 71 FPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150 (480)
Q Consensus 71 ~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~ 150 (480)
.|....+ .+++..|+.. |+-+.+..+..++.....+ + ......+|......|+|..|+..++++....+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~-G~a~~~l~~~~~~~~~~~~---d---~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-- 132 (257)
T COG5010 63 NPEDLSI-AKLATALYLR-GDADSSLAVLQKSAIAYPK---D---RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-- 132 (257)
T ss_pred CcchHHH-HHHHHHHHhc-ccccchHHHHhhhhccCcc---c---HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC--
Confidence 3444444 6777775555 8888888887776544322 2 223344899999999999999999999876654
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHH
Q psy875 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLI 230 (480)
Q Consensus 151 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 230 (480)
-...++.+|.+|.+.|++++|..-|.+++++... .+.+..|+|..+.-.|+ ++.|..++..+... ...-
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~----~p~~~nNlgms~~L~gd-~~~A~~lll~a~l~------~~ad 201 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPN----EPSIANNLGMSLLLRGD-LEDAETLLLPAYLS------PAAD 201 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC----CchhhhhHHHHHHHcCC-HHHHHHHHHHHHhC------CCCc
Confidence 4478999999999999999999999999999544 35678899999999999 99999999888654 3334
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHH
Q psy875 231 RTVMRSMKKLYKKHDKFTELEQIK 254 (480)
Q Consensus 231 ~~~~~~l~~~~~~~g~~~~A~~~~ 254 (480)
..+..+|+.+...+|++++|...-
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhc
Confidence 567789999999999999987643
No 180
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.96 E-value=2e-08 Score=81.17 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=93.6
Q ss_pred HHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy875 98 THEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNK 177 (480)
Q Consensus 98 ~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~ 177 (480)
.+++++...+ ....+...+|..+...|++++|+..+++++...+ ....++..+|.+|..+|++++|+.++++
T Consensus 5 ~~~~~l~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 5 TLKDLLGLDS------EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP--YNSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred hHHHHHcCCh------hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665432 2245678999999999999999999999987654 4457889999999999999999999999
Q ss_pred HHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875 178 ELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 178 al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~ 221 (480)
+++. .+.....+..+|.++...|+ +++|+..++++++..
T Consensus 77 ~~~~----~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 77 AAAL----DPDDPRPYFHAAECLLALGE-PESALKALDLAIEIC 115 (135)
T ss_pred HHhc----CCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhc
Confidence 9988 34457788999999999999 999999999998874
No 181
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.95 E-value=1e-07 Score=77.87 Aligned_cols=119 Identities=15% Similarity=0.134 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH-HHHHHHHHHHHHhhccH
Q psy875 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL-ASCYISLAQTYKDNKQY 168 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~la~~y~~~~~~ 168 (480)
++...+...+++...- .++...-..+...+|.++...|++++|+..|++++...+++.+ ..+...||.++...|+|
T Consensus 25 ~~~~~~~~~~~~l~~~---~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKD---YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 4444444444433332 2223333445555566666666666666666655554433322 34455556666666666
Q ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q psy875 169 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKA 217 (480)
Q Consensus 169 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 217 (480)
++|+..++... ..+..+..+..+|.++...|+ +++|...|++|
T Consensus 102 d~Al~~L~~~~-----~~~~~~~~~~~~Gdi~~~~g~-~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIP-----DEAFKALAAELLGDIYLAQGD-YDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhcc-----CcchHHHHHHHHHHHHHHCCC-HHHHHHHHHHh
Confidence 66666654411 123334455556666666666 66666666555
No 182
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.95 E-value=2e-07 Score=99.08 Aligned_cols=203 Identities=10% Similarity=0.054 Sum_probs=149.5
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT 117 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~ 117 (480)
.+|..+-..|.+.|++++|++.|++..+. . ......+|+.+... +.+.|++++|+..|.+.....-. +. ..
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~-g--i~p~~~tynsLI~a-y~k~G~~deAl~lf~eM~~~Gv~----PD-~~ 650 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEY-N--IKGTPEVYTIAVNS-CSQKGDWDFALSIYDDMKKKGVK----PD-EV 650 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-C--CCCChHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCC----CC-HH
Confidence 35666667777777777777777776654 1 12223456667677 44448888888888877653211 11 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG 197 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~ 197 (480)
+|..+...|.+.|++++|.+++++.......++ ..+|..+...|.+.|++++|++.|++..+... .| ...+|..+.
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~--~P-dvvtyN~LI 726 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLG-TVSYSSLMGACSNAKNWKKALELYEDIKSIKL--RP-TVSTMNALI 726 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CC-CHHHHHHHH
Confidence 788899999999999999999998876543333 46799999999999999999999998765311 12 245689999
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 198 DLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
..|.+.|+ +++|.+.|++.... +-.+ -..+|..+...+.+.|++++|.+++.++.+
T Consensus 727 ~gy~k~G~-~eeAlelf~eM~~~----Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 727 TALCEGNQ-LPKALEVLSEMKRL----GLCP-NTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHCCC-HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999 99999999986532 2222 234566677899999999999999998865
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.95 E-value=2.1e-08 Score=84.42 Aligned_cols=138 Identities=10% Similarity=0.004 Sum_probs=102.7
Q ss_pred ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHH
Q psy875 131 NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELV 210 (480)
Q Consensus 131 ~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 210 (480)
.|..+...+.+.+........+.++..+|.++..+|++++|+.+|++++.+..+ +...+.++.++|.++...|+ +++|
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~-~~eA 91 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGE-HTKA 91 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCC-HHHH
Confidence 455666666555444444556788999999999999999999999999988443 34456789999999999999 9999
Q ss_pred HHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccCCCC
Q psy875 211 VSTHEKALDLARQNKD-DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSS 270 (480)
Q Consensus 211 ~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ 270 (480)
+.++++++.+...... ......++..++..+..+|++++|..+++++...-......+|.
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999987322211 12233445555555559999999999999998876665554443
No 184
>PF13606 Ank_3: Ankyrin repeat
Probab=98.94 E-value=1.2e-09 Score=61.59 Aligned_cols=29 Identities=45% Similarity=0.700 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 452 AGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 452 ~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+|+||||+|+..|+.+++++|+++|+|||
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 36777777777777777777777777765
No 185
>KOG1174|consensus
Probab=98.94 E-value=9.1e-08 Score=86.67 Aligned_cols=172 Identities=14% Similarity=0.060 Sum_probs=144.0
Q ss_pred hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875 30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN 109 (480)
Q Consensus 30 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~ 109 (480)
.+..+.-..++...|......++.++|+-.|+.|..+ .|....+|..+-.+|... |.+.+|....+.++......
T Consensus 327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L----ap~rL~~Y~GL~hsYLA~-~~~kEA~~~An~~~~~~~~s 401 (564)
T KOG1174|consen 327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML----APYRLEIYRGLFHSYLAQ-KRFKEANALANWTIRLFQNS 401 (564)
T ss_pred hccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc----chhhHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHhhcc
Confidence 3445556778999999999999999999999999999 778889999999997777 99999999999999876644
Q ss_pred CCchHHHHHHHHHH-HHHH-hcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcH
Q psy875 110 KDDKLIRTVMRSIK-KLYK-KHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP 187 (480)
Q Consensus 110 ~~~~~~~~~~~~l~-~~y~-~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~ 187 (480)
+.++..+| .++. .----++|.+++++++.+. |....+-..+|.++...|.++.++..+++.+..+.+
T Consensus 402 ------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D--- 470 (564)
T KOG1174|consen 402 ------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD--- 470 (564)
T ss_pred ------hhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc---
Confidence 44555565 3333 3345789999999999776 556677788999999999999999999999988554
Q ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 188 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
...+..||+++...+. +++|+++|..|+.+
T Consensus 471 --~~LH~~Lgd~~~A~Ne-~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 471 --VNLHNHLGDIMRAQNE-PQKAMEYYYKALRQ 500 (564)
T ss_pred --cHHHHHHHHHHHHhhh-HHHHHHHHHHHHhc
Confidence 3457789999999999 99999999999987
No 186
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.94 E-value=4.4e-07 Score=78.66 Aligned_cols=170 Identities=11% Similarity=0.087 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHH
Q psy875 74 AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLA 152 (480)
Q Consensus 74 ~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~ 152 (480)
....++..|..++.. |+|.+|+..|++.....+. .+....+...+|.+|...|+|++|+..+++.+...|. +...
T Consensus 4 ~~~~lY~~a~~~~~~-g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQ-GDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp -HHHHHHHHHHHHHC-T-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 345667888884444 9999999999999887654 4555678889999999999999999999999988776 4456
Q ss_pred HHHHHHHHHHHhh-----------ccHHHHHHHHHHHHhhhhcCc-------------HHHHHHHHHHHHHHHHhCCchH
Q psy875 153 SCYISLAQTYKDN-----------KQYNLAVDYFNKELRLHARNF-------------PEAVKTLGEIGDLYELQEKPFE 208 (480)
Q Consensus 153 ~~~~~la~~y~~~-----------~~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~ 208 (480)
.+++.+|.++..+ +...+|+..|++.++..++.. ...+.--..+|..|++.|. |.
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~-y~ 158 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGK-YK 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--HH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HH
Confidence 7888888886654 344589999999888766521 2234556778999999999 99
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHH
Q psy875 209 LVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELE 251 (480)
Q Consensus 209 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (480)
-|+..++.+++ ..++.+....++..++..|.++|..+.|.
T Consensus 159 aA~~r~~~v~~---~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 159 AAIIRFQYVIE---NYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHH---HSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999988754 46777888899999999999999998554
No 187
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.93 E-value=4.7e-08 Score=79.05 Aligned_cols=113 Identities=9% Similarity=0.011 Sum_probs=87.0
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHH
Q psy875 59 YFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSE 138 (480)
Q Consensus 59 ~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~ 138 (480)
.+++++.. .+........+|..|... |++++|+..+++++...+. ...++.++|.+|..+|++++|+.+
T Consensus 5 ~~~~~l~~----~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~ 73 (135)
T TIGR02552 5 TLKDLLGL----DSEQLEQIYALAYNLYQQ-GRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDA 73 (135)
T ss_pred hHHHHHcC----ChhhHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666 555566677888885444 8899999998888876432 246677889999999999999999
Q ss_pred HHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 139 LHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 139 ~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
+++++...+ .....++.+|.+|...|++++|+.+++++++..+.
T Consensus 74 ~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 74 YALAAALDP--DDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 998876654 34577888999999999999999999998888544
No 188
>KOG1127|consensus
Probab=98.93 E-value=9.8e-08 Score=95.34 Aligned_cols=222 Identities=15% Similarity=0.080 Sum_probs=162.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875 29 SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ 108 (480)
Q Consensus 29 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~ 108 (480)
.......++.++..||.+|..-.+...|.++|++|.++ .+..+.+.-.++.. +....+++.|......+-+..+
T Consensus 484 alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL----Datdaeaaaa~adt-yae~~~we~a~~I~l~~~qka~- 557 (1238)
T KOG1127|consen 484 ALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL----DATDAEAAAASADT-YAEESTWEEAFEICLRAAQKAP- 557 (1238)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchhhhhHHHHHHH-hhccccHHHHHHHHHHHhhhch-
Confidence 33444556777777777777777777777788877777 55555556666777 4444777777655222222111
Q ss_pred CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHH
Q psy875 109 NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE 188 (480)
Q Consensus 109 ~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 188 (480)
...-...+..+|..|...+++.+|+..|+.++...|+ -..++..+|.+|...|+|..|++.|.++..+ .|.
T Consensus 558 ---a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk--D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L----rP~ 628 (1238)
T KOG1127|consen 558 ---AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK--DYNLWLGLGEAYPESGRYSHALKVFTKASLL----RPL 628 (1238)
T ss_pred ---HHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch--hHHHHHHHHHHHHhcCceehHHHhhhhhHhc----CcH
Confidence 1111223335899999999999999999999977654 4478999999999999999999999999988 566
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875 189 AVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ-NKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~ 266 (480)
.....+-.+.+....|+ |.+|+..+.+.+..... ..-......++..++..+...|=+.+|..++++.++..--+-.
T Consensus 629 s~y~~fk~A~~ecd~Gk-Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGK-YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred hHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 66777788999999999 99999999988865432 2233456777888888888889899999999888776544333
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.93 E-value=5e-07 Score=80.22 Aligned_cols=175 Identities=12% Similarity=0.081 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHH
Q psy875 75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLAS 153 (480)
Q Consensus 75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~ 153 (480)
...++..|..+... |+|++|+..|++.+...+ ..+....+...+|.+|.+.++|++|+.++++.+...|. +....
T Consensus 32 ~~~~Y~~A~~~~~~-g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 32 PSEIYATAQQKLQD-GNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 33455677774444 999999999999998765 34566667889999999999999999999999988876 56678
Q ss_pred HHHHHHHHHHhhc------------------cHHHHHHHHHHHHhhhhcC-------------cHHHHHHHHHHHHHHHH
Q psy875 154 CYISLAQTYKDNK------------------QYNLAVDYFNKELRLHARN-------------FPEAVKTLGEIGDLYEL 202 (480)
Q Consensus 154 ~~~~la~~y~~~~------------------~~~~A~~~~~~al~~~~~~-------------~~~~~~~~~~l~~~~~~ 202 (480)
+++.+|.++...+ ...+|+..|++.++..++. ....+.--..+|..|++
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998764443 2357788888888776652 12234455678999999
Q ss_pred hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 203 QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 203 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
.|. |.-|+.-++..++ ..++.+...+++..+...|..+|..++|..+....
T Consensus 188 ~~~-y~AA~~r~~~v~~---~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 188 RGA-YVAVVNRVEQMLR---DYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred cCc-hHHHHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999 9998888877754 56677788899999999999999999999877654
No 190
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.92 E-value=1.4e-07 Score=77.06 Aligned_cols=121 Identities=11% Similarity=0.084 Sum_probs=100.2
Q ss_pred hcCChHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCc
Q psy875 128 KHDNLDSACSELHTVLSSDLCK-DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKP 206 (480)
Q Consensus 128 ~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (480)
..++..++...+++.....+.. ....+...+|.++...|++++|...|++++... .++.....+...+|.++..+|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~- 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQ- 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCC-
Confidence 5778888888888877766654 336778889999999999999999999999865 3455667788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 207 FELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
|++|+..++. .........+...+|++|..+|++++|...|+++
T Consensus 101 ~d~Al~~L~~-------~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQ-------IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHh-------ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999988855 2334456667889999999999999999999876
No 191
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.91 E-value=1.1e-08 Score=74.91 Aligned_cols=83 Identities=23% Similarity=0.264 Sum_probs=49.5
Q ss_pred cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchH
Q psy875 129 HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE 208 (480)
Q Consensus 129 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (480)
+|+|++|+.++++.+...+.......+..+|.+|+..|+|++|+.++++ .+. .+........+|.+++.+|+ |+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~----~~~~~~~~~l~a~~~~~l~~-y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL----DPSNPDIHYLLARCLLKLGK-YE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH----HHCHHHHHHHHHHHHHHTT--HH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC----CCCCHHHHHHHHHHHHHhCC-HH
Confidence 4667777777777666555321334455567777777777777777766 333 22234445555777777777 77
Q ss_pred HHHHHHHHH
Q psy875 209 LVVSTHEKA 217 (480)
Q Consensus 209 ~A~~~~~~a 217 (480)
+|+..++++
T Consensus 76 eAi~~l~~~ 84 (84)
T PF12895_consen 76 EAIKALEKA 84 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 777766654
No 192
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.91 E-value=3.2e-08 Score=79.07 Aligned_cols=103 Identities=7% Similarity=0.074 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT 192 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 192 (480)
.......+.+|..+...|++++|...|+-..... +.....+++||.++..+|+|++|+..|.+++.+. +..+..
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~----~ddp~~ 105 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK----IDAPQA 105 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCchH
Confidence 3445567789999999999999999999887665 5566889999999999999999999999999994 445678
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875 193 LGEIGDLYELQEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~ 222 (480)
+.++|.+++..|+ .+.|.+.|+.|+....
T Consensus 106 ~~~ag~c~L~lG~-~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDN-VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHHhc
Confidence 9999999999999 9999999999998863
No 193
>KOG1127|consensus
Probab=98.90 E-value=1.5e-07 Score=94.04 Aligned_cols=191 Identities=15% Similarity=0.128 Sum_probs=156.9
Q ss_pred cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc
Q psy875 50 NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH 129 (480)
Q Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~ 129 (480)
+.+...|+..|-+++++ .+..+.++..+|.+|... .+...|.++|+||.++.. ..+.+...++..|...
T Consensus 471 rK~~~~al~ali~alrl----d~~~apaf~~LG~iYrd~-~Dm~RA~kCf~KAFeLDa------tdaeaaaa~adtyae~ 539 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRL----DVSLAPAFAFLGQIYRDS-DDMKRAKKCFDKAFELDA------TDAEAAAASADTYAEE 539 (1238)
T ss_pred hhhHHHHHHHHHHHHhc----ccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhcc
Confidence 45588899999999998 788899999999996555 689999999999998833 3355566788999999
Q ss_pred CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHH
Q psy875 130 DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFEL 209 (480)
Q Consensus 130 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (480)
.+++.|......+-+..+.......+...|-.|.+.+++..|+..|+-++++ .|.-..+|..+|.+|...|+ |.-
T Consensus 540 ~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~----dPkD~n~W~gLGeAY~~sGr-y~~ 614 (1238)
T KOG1127|consen 540 STWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT----DPKDYNLWLGLGEAYPESGR-YSH 614 (1238)
T ss_pred ccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC----CchhHHHHHHHHHHHHhcCc-eeh
Confidence 9999999986655554444333344556999999999999999999999998 67778899999999999999 999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875 210 VVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE 262 (480)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~ 262 (480)
|++.|.+|..+ +|.-.-+.+..+-+....|+|.+|...+.+......
T Consensus 615 AlKvF~kAs~L------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 615 ALKVFTKASLL------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred HHHhhhhhHhc------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999999877 555555666778888999999999999888766443
No 194
>KOG3060|consensus
Probab=98.90 E-value=1.5e-06 Score=74.04 Aligned_cols=173 Identities=16% Similarity=0.119 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~ 111 (480)
..++....|-....+....|+.+.|..++++....+ |........-|.. +...|+|++|+++|..-++-.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f----p~S~RV~~lkam~-lEa~~~~~~A~e~y~~lL~dd----- 116 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF----PGSKRVGKLKAML-LEATGNYKEAIEYYESLLEDD----- 116 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC----CCChhHHHHHHHH-HHHhhchhhHHHHHHHHhccC-----
Confidence 445667777778888888999999999999877762 3333333344666 444499999999998877532
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 191 (480)
+.-..++...-.+...+|+.-+|++-+.+.+...... ..++..++.+|...|+|++|.-++++.+-+ .|..+.
T Consensus 117 -pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D--~EAW~eLaeiY~~~~~f~kA~fClEE~ll~----~P~n~l 189 (289)
T KOG3060|consen 117 -PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND--QEAWHELAEIYLSEGDFEKAAFCLEELLLI----QPFNPL 189 (289)
T ss_pred -cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhHhHHHHHHHHHHHHHHc----CCCcHH
Confidence 2223445555566778899899999998888766544 478899999999999999999999999887 566677
Q ss_pred HHHHHHHHHHHhC---CchHHHHHHHHHHHHHHH
Q psy875 192 TLGEIGDLYELQE---KPFELVVSTHEKALDLAR 222 (480)
Q Consensus 192 ~~~~l~~~~~~~~---~~~~~A~~~~~~al~~~~ 222 (480)
.+..+|++++.+| + +.-|.++|.+++++..
T Consensus 190 ~f~rlae~~Yt~gg~eN-~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 190 YFQRLAEVLYTQGGAEN-LELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHhCh
Confidence 7888898888877 4 6789999999998843
No 195
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.90 E-value=6e-08 Score=81.86 Aligned_cols=101 Identities=15% Similarity=0.237 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
....+.+++.+|..+...|++++|+.+|+++++. ..+.+.....+..+|.+| ...|++++|+.++++++...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~---- 104 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIY-ASNGEHDKALEYYHQALELNPK---- 104 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCcc----
Confidence 3345566777777777777777777777777766 333333455666777773 3347777777777777765322
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHT 141 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~ 141 (480)
....+..+|.+|...|+...|...+.+
T Consensus 105 --~~~~~~~lg~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 105 --QPSALNNIAVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred --cHHHHHHHHHHHHHcCChHhHhhCHHH
Confidence 134455666666666665555544443
No 196
>KOG1586|consensus
Probab=98.90 E-value=5.7e-07 Score=75.44 Aligned_cols=169 Identities=14% Similarity=0.116 Sum_probs=101.5
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc----HHHHHHHHHHHHHhh
Q psy875 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD----LASCYISLAQTYKDN 165 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~~~la~~y~~~ 165 (480)
++|..|-..|.+|-++..+.++....+..|...+.+|.+- +.++|+.++++++++..... -+.-+..+|.+|...
T Consensus 48 K~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd 126 (288)
T KOG1586|consen 48 KNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD 126 (288)
T ss_pred HhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh
Confidence 4555555555555555444444444555555555555444 66666666666665554421 134466778777654
Q ss_pred -ccHHHHHHHHHHHHhhhhcC--cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHH
Q psy875 166 -KQYNLAVDYFNKELRLHARN--FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD-DKLIRTVMRSMKKLY 241 (480)
Q Consensus 166 -~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~ 241 (480)
.++++|+.+|+++-+.++++ ......++.-.+..--..++ |.+|+..|++...-.-..+- ......-+..-+.++
T Consensus 127 l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leq-Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLCh 205 (288)
T KOG1586|consen 127 LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQ-YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCH 205 (288)
T ss_pred HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHh
Confidence 88888888888888876662 33344566667777777788 88888888876543221111 112233444556667
Q ss_pred HHcCChHHHHHHHHHHHHH
Q psy875 242 KKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 242 ~~~g~~~~A~~~~~~~~~l 260 (480)
....+.-.+...++++.++
T Consensus 206 l~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 206 LCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HhcccHHHHHHHHHHHHhc
Confidence 7777777777777776553
No 197
>KOG1586|consensus
Probab=98.90 E-value=1.2e-06 Score=73.58 Aligned_cols=187 Identities=19% Similarity=0.157 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ 108 (480)
Q Consensus 31 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~ 108 (480)
+-+++.+..+..-|+.|....+++.|=..|.++-++. .++..+.+.+|...+.+ +.. .+..+|..++++|++++..
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk-~~~~eAv~cL~~aieIyt~ 105 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKK-VDPEEAVNCLEKAIEIYTD 105 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhc-cChHHHHHHHHHHHHHHHh
Confidence 3567788899999999999999999999999999887 55666788899999999 677 7999999999999999998
Q ss_pred CCCchHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875 109 NKDDKLIRTVMRSIKKLYKKH-DNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA 183 (480)
Q Consensus 109 ~~~~~~~~~~~~~l~~~y~~~-~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~ 183 (480)
.+.-..-+.-+..+|.+|..- .++++|+.+|+++-.-... .....++...|..-..+++|.+|+..|++.....-
T Consensus 106 ~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 106 MGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred hhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 887777788888999999866 8999999999977644332 12245677778888899999999999999766544
Q ss_pred cCcHH--HH-HHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 184 RNFPE--AV-KTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 184 ~~~~~--~~-~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
+++.. .+ ..++.-|.+++-..+ .--+...+++..++
T Consensus 186 ~n~LLKys~KdyflkAgLChl~~~D-~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 186 DNNLLKYSAKDYFLKAGLCHLCKAD-EVNAQRALEKYQEL 224 (288)
T ss_pred cchHHHhHHHHHHHHHHHHhHhccc-HHHHHHHHHHHHhc
Confidence 43221 12 233445556655555 44444444444443
No 198
>KOG0818|consensus
Probab=98.87 E-value=1.2e-08 Score=93.56 Aligned_cols=85 Identities=35% Similarity=0.502 Sum_probs=79.1
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCH
Q psy875 388 ALHVAAARGNLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT 466 (480)
Q Consensus 388 ~l~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~ 466 (480)
.||.+++.|+.++.--|+..|+++|..+. .|.||||.|+..|...-+++|+-+|+|++ .+|.+|.||+.+|-..||-
T Consensus 136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~--a~d~~GmtP~~~AR~~gH~ 213 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPG--AQDSSGMTPVDYARQGGHH 213 (669)
T ss_pred HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCC--CCCCCCCcHHHHHHhcCch
Confidence 48999999999998889999999999874 69999999999999999999999999999 6799999999999999999
Q ss_pred HHHHHHHH
Q psy875 467 DIVQALVS 474 (480)
Q Consensus 467 ~~~~~Ll~ 474 (480)
++.+-|++
T Consensus 214 ~laeRl~e 221 (669)
T KOG0818|consen 214 ELAERLVE 221 (669)
T ss_pred HHHHHHHH
Confidence 98887775
No 199
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.87 E-value=1.9e-07 Score=78.80 Aligned_cols=106 Identities=15% Similarity=0.190 Sum_probs=80.9
Q ss_pred CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875 111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA 189 (480)
Q Consensus 111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 189 (480)
.....+.++.++|..+...|++++|+.+|++++...+.+ ....++.++|.+|...|++++|+.++++++++. +..
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~ 105 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN----PKQ 105 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccc
Confidence 345567788999999999999999999999998766543 346789999999999999999999999999983 344
Q ss_pred HHHHHHHHHHHHHhCC------chHHHHHHHHHHHHH
Q psy875 190 VKTLGEIGDLYELQEK------PFELVVSTHEKALDL 220 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~------~~~~A~~~~~~al~~ 220 (480)
...+..+|.++...|+ ++++|+..+++|++.
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~ 142 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY 142 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence 5666777777777665 044455555555443
No 200
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.86 E-value=1.2e-07 Score=75.88 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
.....+.+|..++..|++++|.+.|+-...+ .+....-|+++|.+ +..+|+|.+|+..|.+|+.+.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~----Dp~~~~y~~gLG~~-~Q~~g~~~~AI~aY~~A~~L~~dd------ 102 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY----DAWSFDYWFRLGEC-CQAQKHWGEAIYAYGRAAQIKIDA------ 102 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHH-HHHHhhHHHHHHHHHHHHhcCCCC------
Confidence 3444555555555666666666666655555 45555555566666 333366666666666665554321
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSS 145 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~ 145 (480)
...+.++|.+|+..|+.+.|.+.|+.++..
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 234455555555555555555555555533
No 201
>KOG1128|consensus
Probab=98.86 E-value=4.8e-08 Score=94.63 Aligned_cols=189 Identities=17% Similarity=0.122 Sum_probs=144.0
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHH
Q psy875 44 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIK 123 (480)
Q Consensus 44 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~ 123 (480)
..+|...|+..+|-.+..+-++ .+.....|..+|.+ ..+ -.+|++|.++.+.. .+.+...+|
T Consensus 431 i~CY~~lg~~~kaeei~~q~le-----k~~d~~lyc~LGDv-~~d-------~s~yEkawElsn~~-----sarA~r~~~ 492 (777)
T KOG1128|consen 431 ILCYLLLGQHGKAEEINRQELE-----KDPDPRLYCLLGDV-LHD-------PSLYEKAWELSNYI-----SARAQRSLA 492 (777)
T ss_pred HHHHHHhcccchHHHHHHHHhc-----CCCcchhHHHhhhh-ccC-------hHHHHHHHHHhhhh-----hHHHHHhhc
Confidence 3444555566666666655443 24445566667776 333 35677777765432 234566677
Q ss_pred HHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh
Q psy875 124 KLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ 203 (480)
Q Consensus 124 ~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~ 203 (480)
......++|+++.+.++.++.+.+ -...+|+.+|.+..+.++++.|.++|..++.+ .|....+|+|++.+|...
T Consensus 493 ~~~~~~~~fs~~~~hle~sl~~np--lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL----~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 493 LLILSNKDFSEADKHLERSLEINP--LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL----EPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred cccccchhHHHHHHHHHHHhhcCc--cchhHHHhccHHHHHHhhhHHHHHHHHHHhhc----CCCchhhhhhhhHHHHHH
Confidence 777889999999999999997764 44578999999999999999999999999998 677789999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875 204 EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 204 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
++ -.+|...+++|++.- ..-..+..+-..+..+.|.+++|.+.+.+...+.+.
T Consensus 567 ~~-k~ra~~~l~EAlKcn------~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 567 KK-KKRAFRKLKEALKCN------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred hh-hHHHHHHHHHHhhcC------CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 99 999999999999873 222344556667788999999999999988876654
No 202
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.85 E-value=1.3e-06 Score=85.53 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy875 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRT 232 (480)
Q Consensus 153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 232 (480)
++++.+|..|...|++++|++++++|++. .|..+..|...|.++...|+ +.+|.+.++.|-.+ +..-..
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~h----tPt~~ely~~KarilKh~G~-~~~Aa~~~~~Ar~L------D~~DRy 263 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEH----TPTLVELYMTKARILKHAGD-LKEAAEAMDEAREL------DLADRY 263 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhC------ChhhHH
Confidence 45555566666666666666666666655 44555556666666666666 66666665555444 222222
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q psy875 233 VMRSMKKLYKKHDKFTELEQIKT 255 (480)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~ 255 (480)
+-...+....+.|+.++|.....
T Consensus 264 iNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 264 INSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 33344555556666666555543
No 203
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=2.4e-07 Score=79.44 Aligned_cols=158 Identities=13% Similarity=0.071 Sum_probs=127.1
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875 41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR 120 (480)
Q Consensus 41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~ 120 (480)
..++..+...|+-+.+..+..++... .+.........|.. ....|+|..|+..+++|..+.+.. ..+++
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~----~~~d~~ll~~~gk~-~~~~g~~~~A~~~~rkA~~l~p~d------~~~~~ 138 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA----YPKDRELLAAQGKN-QIRNGNFGEAVSVLRKAARLAPTD------WEAWN 138 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc----CcccHHHHHHHHHH-HHHhcchHHHHHHHHHHhccCCCC------hhhhh
Confidence 77888888888888888888876555 33333334447777 555599999999999999885533 56889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY 200 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 200 (480)
.+|.+|.+.|+++.|..-|.++++..+... .+..|+|..|.-.|+++.|..++.++... ++.-..+..+++.+.
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~~L~gd~~~A~~lll~a~l~----~~ad~~v~~NLAl~~ 212 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEP--SIANNLGMSLLLRGDLEDAETLLLPAYLS----PAADSRVRQNLALVV 212 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHhC----CCCchHHHHHHHHHH
Confidence 999999999999999999999998776544 77899999999999999999999998776 333456778999999
Q ss_pred HHhCCchHHHHHHHHH
Q psy875 201 ELQEKPFELVVSTHEK 216 (480)
Q Consensus 201 ~~~~~~~~~A~~~~~~ 216 (480)
-.+|+ +++|.....+
T Consensus 213 ~~~g~-~~~A~~i~~~ 227 (257)
T COG5010 213 GLQGD-FREAEDIAVQ 227 (257)
T ss_pred hhcCC-hHHHHhhccc
Confidence 99999 8888765543
No 204
>KOG1585|consensus
Probab=98.82 E-value=1.4e-06 Score=73.70 Aligned_cols=202 Identities=13% Similarity=0.039 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChH
Q psy875 54 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLD 133 (480)
Q Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~ 133 (480)
.+|.+...+.......+....+..|..-+.. +...++|++|...+.||.+..+.......-+.+|-..+.+...+..+.
T Consensus 10 ~ea~e~~a~t~~~wkad~dgaas~yekAAva-fRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kls 88 (308)
T KOG1585|consen 10 SEADEMTALTLTRWKADWDGAASLYEKAAVA-FRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLS 88 (308)
T ss_pred HHHHHHHHHHhhccCCCchhhHHHHHHHHHH-HHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344443333332234444556666666777 444488888888888888877776666666778888888888888888
Q ss_pred HHHHHHHHHhccccc---ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC--cHHHHHHHHHHHHHHHHhCCchH
Q psy875 134 SACSELHTVLSSDLC---KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN--FPEAVKTLGEIGDLYELQEKPFE 208 (480)
Q Consensus 134 ~A~~~~~~~l~~~~~---~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 208 (480)
++..+|+++...... ++.+..-...|-=..+..++++|+..|++++.+...+ .......+...+.++.+..+ |.
T Consensus 89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k-f~ 167 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK-FT 167 (308)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH-hh
Confidence 888888887754432 4443333333444456678999999999999887663 23345566778889999999 99
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 209 LVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 209 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
+|-..+.+-.....+..........+.....+|.-..+|..|...++..
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 9998888887777777777777777777777788888998888888654
No 205
>PF13606 Ank_3: Ankyrin repeat
Probab=98.81 E-value=7e-09 Score=58.41 Aligned_cols=29 Identities=48% Similarity=0.697 Sum_probs=22.0
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 417 AGWLPLHEAANHGHTDIVQALVSAGADPN 445 (480)
Q Consensus 417 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~ 445 (480)
.|+||||+||..|+.+++++|+++|+|+|
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 36777777777777777777777777776
No 206
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.80 E-value=9.2e-08 Score=99.63 Aligned_cols=201 Identities=12% Similarity=0.137 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT 117 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~ 117 (480)
.+|..+...+...|++++|.+.+...++. . .+....+++.+...| .+.|++++|.+.|++..+ ++ ..
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g--~~~d~~~~~~Li~~y-~k~G~~~~A~~vf~~m~~-----~d----~~ 392 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRT-G--FPLDIVANTALVDLY-SKWGRMEDARNVFDRMPR-----KN----LI 392 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHh-C--CCCCeeehHHHHHHH-HHCCCHHHHHHHHHhCCC-----CC----ee
Confidence 35666666677777777777777666654 1 111122344445552 223666666555554321 01 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcH----------
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP---------- 187 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~---------- 187 (480)
+|+.+...|.+.|+.++|++.|++.......|+ ..+|..+...+...|+.++|.++|++..+...-.+.
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 455555555555666666665555443322222 233444555555555555555555544332110000
Q ss_pred --------------------HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q psy875 188 --------------------EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKF 247 (480)
Q Consensus 188 --------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (480)
....+|..+...+...|+ ++.|...+++.+.+ .+.....|..|+.+|.+.|++
T Consensus 472 l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~-~~~a~~~~~~l~~~------~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKN-LELGRLAAEKLYGM------GPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHhCC------CCCCCcchHHHHHHHHhCCCH
Confidence 012234444444444444 45444444443322 122234567788888888888
Q ss_pred HHHHHHHHHHHH
Q psy875 248 TELEQIKTELKS 259 (480)
Q Consensus 248 ~~A~~~~~~~~~ 259 (480)
++|.+.+++..+
T Consensus 545 ~~A~~v~~~m~~ 556 (697)
T PLN03081 545 AEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHHHH
Confidence 888888877654
No 207
>KOG3060|consensus
Probab=98.78 E-value=3.2e-06 Score=72.04 Aligned_cols=194 Identities=12% Similarity=0.055 Sum_probs=146.3
Q ss_pred ccccHHHHHHHHHHHHHHh-hc-cCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH
Q psy875 49 DNKQYNLAVDYFNKELRLH-AR-NFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLY 126 (480)
Q Consensus 49 ~~~~~~~A~~~~~~al~~~-~~-~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y 126 (480)
...+.++-++++...+... .+ ..++....|-....+ ....+..+-|..++++....++.. ..+...-|..+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IA-Ald~~~~~lAq~C~~~L~~~fp~S------~RV~~lkam~l 96 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIA-ALDTGRDDLAQKCINQLRDRFPGS------KRVGKLKAMLL 96 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhCCCC------hhHHHHHHHHH
Confidence 3567788888888887775 23 344555555555555 455588999999998876665332 23445667889
Q ss_pred HhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCc
Q psy875 127 KKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKP 206 (480)
Q Consensus 127 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (480)
...|++++|+++|...++.+|... .++...-.+...+|+.-+|++.+.+-++.+..+ ..+|..++.+|+..|+
T Consensus 97 Ea~~~~~~A~e~y~~lL~ddpt~~--v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D----~EAW~eLaeiY~~~~~- 169 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDDPTDT--VIRKRKLAILKAQGKNLEAIKELNEYLDKFMND----QEAWHELAEIYLSEGD- 169 (289)
T ss_pred HHhhchhhHHHHHHHHhccCcchh--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHhHhH-
Confidence 999999999999999997775443 556666667778888889999999988885444 6789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHH
Q psy875 207 FELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD---KFTELEQIKTELKSLEE 262 (480)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~l~~ 262 (480)
|++|.-++++.+-+ .|........+++++.-+| |++-|.+||.++.++..
T Consensus 170 f~kA~fClEE~ll~------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 170 FEKAAFCLEELLLI------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999999998866 4445556667788777776 56678899988887654
No 208
>KOG0818|consensus
Probab=98.78 E-value=2.2e-08 Score=91.91 Aligned_cols=91 Identities=30% Similarity=0.341 Sum_probs=80.7
Q ss_pred CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875 335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ 414 (480)
Q Consensus 335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~ 414 (480)
....-||..++.|+.++---|+..|+++|.... ..|.||||.|+..|+..-+++|+-.|+|++..
T Consensus 132 ~LsrQLhasvRt~nlet~LRll~lGA~~N~~hp---------------ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~ 196 (669)
T KOG0818|consen 132 DLSKQLHSSVRTGNLETCLRLLSLGAQANFFHP---------------EKGNTPLHVAAKAGQILQAELLAVYGADPGAQ 196 (669)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHcccccCCCCc---------------ccCCchhHHHHhccchhhhhHHhhccCCCCCC
Confidence 334567899999999999999999999998643 23999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHc
Q psy875 415 DSAGWLPLHEAANHGHTDIVQALVSA 440 (480)
Q Consensus 415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~ 440 (480)
|..|+||+.+|-..||-++.+.|++.
T Consensus 197 d~~GmtP~~~AR~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 197 DSSGMTPVDYARQGGHHELAERLVEI 222 (669)
T ss_pred CCCCCcHHHHHHhcCchHHHHHHHHH
Confidence 99999999999999998887777654
No 209
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.78 E-value=1.3e-07 Score=74.49 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=49.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV 118 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~ 118 (480)
+++.+|..+...|++++|++.|.+++.. .++.+....+++.+|.+|+.. |++++|+.++++++...+.. +....+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~---~~~~~~ 78 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK-YPKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKS---PKAPDA 78 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCC---CcccHH
Confidence 4455555555555555555555555554 222222234444555553222 55555555555555443211 112233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcccc
Q psy875 119 MRSIKKLYKKHDNLDSACSELHTVLSSDL 147 (480)
Q Consensus 119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~ 147 (480)
+..+|.++..+|++++|+.++.+++...|
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 44555555555555555555555544433
No 210
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.76 E-value=4.1e-07 Score=94.79 Aligned_cols=195 Identities=11% Similarity=0.038 Sum_probs=104.4
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV 118 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~ 118 (480)
+|+.+...|...|++++|++.|.+..+. +-.++ ..+|..+... +...|.+++|.+.+...++..-.. -..+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd-~~t~~~ll~a-~~~~g~~~~a~~i~~~m~~~g~~~-----d~~~ 362 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDS--GVSID-QFTFSIMIRI-FSRLALLEHAKQAHAGLIRTGFPL-----DIVA 362 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCC-HHHHHHHHHH-HHhccchHHHHHHHHHHHHhCCCC-----Ceee
Confidence 4555555555555555555555554332 11111 2234444444 333355666655555554432111 1234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875 119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD 198 (480)
Q Consensus 119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~ 198 (480)
+..+...|.+.|++++|.+.|++... ++ ..+|+.+...|.+.|+.++|++.|++..+. +..|. ..++..+-.
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~~----~d-~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g~~Pd-~~T~~~ll~ 434 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMPR----KN-LISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPN-HVTFLAVLS 434 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCCC----CC-eeeHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCC-HHHHHHHHH
Confidence 55666666666777777766665432 11 245666777777777777777777665543 11111 334555666
Q ss_pred HHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy875 199 LYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKT 255 (480)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 255 (480)
.+...|. .++|..+|++..+. .+..+ ....|..+...+.+.|++++|.+.++
T Consensus 435 a~~~~g~-~~~a~~~f~~m~~~---~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 435 ACRYSGL-SEQGWEIFQSMSEN---HRIKP-RAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHhcCCc-HHHHHHHHHHHHHh---cCCCC-CccchHhHHHHHHhcCCHHHHHHHHH
Confidence 6666777 77777766665432 11111 22345566777777777777776654
No 211
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.76 E-value=6e-08 Score=67.98 Aligned_cols=64 Identities=30% Similarity=0.498 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHH
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE-KPFELVVSTHEKALDL 220 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~A~~~~~~al~~ 220 (480)
+.++..+|.++...|+|++|+.+|.+++++ .+..+.++.++|.++..+| + +++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~----~p~~~~~~~~~g~~~~~~~~~-~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL----DPNNAEAYYNLGLAYMKLGKD-YEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----STTHHHHHHHHHHHHHHTTTH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHc
Confidence 345666666666666666666666666666 4445566666666666666 5 66666666666654
No 212
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.75 E-value=1.7e-07 Score=73.82 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 195 (480)
.+++.+|..+...|++++|+..|.+++...+. +....+++.+|.++...|++++|+.+|++++...++. +....++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS-PKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC-CcccHHHHH
Confidence 46788999999999999999999999876654 3336788999999999999999999999999875442 234567899
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~al~~~ 221 (480)
+|.++...|+ +++|..+++++++..
T Consensus 82 ~~~~~~~~~~-~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGD-KEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCC-hHHHHHHHHHHHHHC
Confidence 9999999999 999999999998763
No 213
>KOG1156|consensus
Probab=98.75 E-value=1.4e-06 Score=83.50 Aligned_cols=205 Identities=11% Similarity=0.046 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
.-....-..|......|+-++|..+...++.. ......+|..+|.+|... ++|++|+++|+.|+.+.+.+
T Consensus 39 eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~----d~~S~vCwHv~gl~~R~d-K~Y~eaiKcy~nAl~~~~dN----- 108 (700)
T KOG1156|consen 39 EHGESLAMKGLTLNCLGKKEEAYELVRLGLRN----DLKSHVCWHVLGLLQRSD-KKYDEAIKCYRNALKIEKDN----- 108 (700)
T ss_pred ccchhHHhccchhhcccchHHHHHHHHHHhcc----CcccchhHHHHHHHHhhh-hhHHHHHHHHHHHHhcCCCc-----
Confidence 44567788899999999999999999988876 555667889999995555 99999999999999885533
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc----CcHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR----NFPEAV 190 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~ 190 (480)
..++..++.+..++++|+-....-.+.++..+. .-..|...|..+.-.|+|..|.+..+...+.... ......
T Consensus 109 -~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~--~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s 185 (700)
T KOG1156|consen 109 -LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS--QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS 185 (700)
T ss_pred -HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 567889999999999999888887777766644 3356778889999999999999888877665432 223445
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 191 KTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
.+......+..+.|. +++|.+.+.+--.- ...........+.++.+++++++|...+...+.
T Consensus 186 e~~Ly~n~i~~E~g~-~q~ale~L~~~e~~------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 186 ELLLYQNQILIEAGS-LQKALEHLLDNEKQ------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHHHHHHHHHccc-HHHHHHHHHhhhhH------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 566666777788888 77777766553221 222334445678899999999999888776654
No 214
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.75 E-value=2.4e-06 Score=88.49 Aligned_cols=206 Identities=8% Similarity=-0.037 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
..+....-.+....+++.++++.|+..... ....|.. +....|..|... ++.++|+..|++++.-.......+.-.
T Consensus 292 ~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-~~~~P~y--~~~a~adayl~~-~~P~kA~~l~~~~~~~~~~~~~~~~~~ 367 (822)
T PRK14574 292 QRARIDRLGALLVRHQTADLIKEYEAMEAE-GYKMPDY--ARRWAASAYIDR-RLPEKAAPILSSLYYSDGKTFRNSDDL 367 (822)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-CCCCCHH--HHHHHHHHHHhc-CCcHHHHHHHHHHhhccccccCCCcch
Confidence 445555556667789999999999876554 3233443 445678885555 999999999999976442111111112
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccc-------------cccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDL-------------CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA 183 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~-------------~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~ 183 (480)
.....|-..|...++|++|..++++.....| +++.......++.++...|++.+|++.+++.+..
T Consensus 368 ~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-- 445 (822)
T PRK14574 368 LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-- 445 (822)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 2235677889999999999999997765333 3566788888999999999999999999999888
Q ss_pred cCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 184 RNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
.|........+|.++..+|. +.+|+..++.++.+ .+....+...++.++..+|++.+|....+..
T Consensus 446 --aP~n~~l~~~~A~v~~~Rg~-p~~A~~~~k~a~~l------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 446 --APANQNLRIALASIYLARDL-PRKAEQELKAVESL------APRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred --CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhh------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45556778899999999999 99999999887766 4555677789999999999999998777554
No 215
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.74 E-value=9.4e-08 Score=66.98 Aligned_cols=65 Identities=29% Similarity=0.462 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhh
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK-SFEIVQSTHEKALDLA 106 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~~A~~~~~kAl~~~ 106 (480)
+.++..+|.++...|+|++|+.+|.+++++ .+....++.++|.+|... | ++++|+.++++|+++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~----~p~~~~~~~~~g~~~~~~-~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL----DPNNAEAYYNLGLAYMKL-GKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----STTHHHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999 777888999999995555 8 8999999999999874
No 216
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.74 E-value=1.4e-07 Score=89.11 Aligned_cols=95 Identities=21% Similarity=0.147 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875 119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD 198 (480)
Q Consensus 119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~ 198 (480)
+...|...+..|+|++|+.+|.+++...+. ...++.++|.+|..+|++++|+..+++++++ .+....+++.+|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l----~P~~~~a~~~lg~ 78 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIKLGNFTEAVADANKAIEL----DPSLAKAYLRKGT 78 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCCHHHHHHHHH
Confidence 345678888999999999999999977654 4578999999999999999999999999998 4555778999999
Q ss_pred HHHHhCCchHHHHHHHHHHHHH
Q psy875 199 LYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~ 220 (480)
+++.+|+ |++|+..|++++.+
T Consensus 79 ~~~~lg~-~~eA~~~~~~al~l 99 (356)
T PLN03088 79 ACMKLEE-YQTAKAALEKGASL 99 (356)
T ss_pred HHHHhCC-HHHHHHHHHHHHHh
Confidence 9999999 99999999999987
No 217
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.73 E-value=9.5e-08 Score=69.87 Aligned_cols=84 Identities=24% Similarity=0.288 Sum_probs=66.3
Q ss_pred hhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy875 164 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK 243 (480)
Q Consensus 164 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (480)
++|+|++|+.++++.++..+.++ ....++.+|.+++..|+ |++|+..+++ ... .+........+|.++.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~-y~~A~~~~~~-~~~------~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGK-YEEAIELLQK-LKL------DPSNPDIHYLLARCLLK 70 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTH-HHHHHHHHHC-HTH------HHCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCC-HHHHHHHHHH-hCC------CCCCHHHHHHHHHHHHH
Confidence 36899999999999999855432 55677889999999999 9999999988 433 22234556677999999
Q ss_pred cCChHHHHHHHHHH
Q psy875 244 HDKFTELEQIKTEL 257 (480)
Q Consensus 244 ~g~~~~A~~~~~~~ 257 (480)
+|++++|+..++++
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 99999999999875
No 218
>KOG2376|consensus
Probab=98.73 E-value=2.8e-06 Score=80.74 Aligned_cols=197 Identities=17% Similarity=0.143 Sum_probs=136.0
Q ss_pred HHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHH
Q psy875 45 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKK 124 (480)
Q Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~ 124 (480)
..+...++|++|.+...+.+.. .++......+ - .+...+.+.|++|+...++-... .......+..+.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~-~pdd~~a~~c---K-vValIq~~ky~~ALk~ikk~~~~-------~~~~~~~fEKAY 87 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSI-VPDDEDAIRC---K-VVALIQLDKYEDALKLIKKNGAL-------LVINSFFFEKAY 87 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhc-CCCcHhhHhh---h-HhhhhhhhHHHHHHHHHHhcchh-------hhcchhhHHHHH
Confidence 4566789999999999999888 4433333222 1 12245667888887433322111 111222268889
Q ss_pred HHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--------------------
Q psy875 125 LYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-------------------- 184 (480)
Q Consensus 125 ~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-------------------- 184 (480)
+.+++++.++|+..++ .+.. ....+...-|++++++|+|++|+..|+..++...+
T Consensus 88 c~Yrlnk~Dealk~~~-~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLK-GLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHcccHHHHHHHHh-cccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 9999999999999998 2211 11245666799999999999999999876432111
Q ss_pred -------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC---C------cHHHHHHHHHHHHHHHHcCChH
Q psy875 185 -------NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK---D------DKLIRTVMRSMKKLYKKHDKFT 248 (480)
Q Consensus 185 -------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~---~------~~~~~~~~~~l~~~~~~~g~~~ 248 (480)
.+......++|.|.++...|+ |.+|++.+++|+++.++.- + ...+..+...|+.++..+|+.+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gk-y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGK-YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 122345678999999999999 9999999999977665421 1 1233455668999999999999
Q ss_pred HHHHHHHHHHH
Q psy875 249 ELEQIKTELKS 259 (480)
Q Consensus 249 ~A~~~~~~~~~ 259 (480)
+|...|...++
T Consensus 242 ea~~iy~~~i~ 252 (652)
T KOG2376|consen 242 EASSIYVDIIK 252 (652)
T ss_pred HHHHHHHHHHH
Confidence 99998877665
No 219
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.72 E-value=4.6e-06 Score=81.69 Aligned_cols=207 Identities=14% Similarity=0.190 Sum_probs=121.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc------
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD------ 112 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~------ 112 (480)
+......++...|++++|++++.+.... ..+....+-..|.+ +..+|++++|...|..-+...+....-
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~l-l~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~ 80 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ----ILDKLAVLEKRAEL-LLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh----CCCHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 4444555555666666666666554443 44444444555666 444466666666666655554322110
Q ss_pred -------------hHHHHHHHHHHHHH-------------HhcCChHHHHHHHH-HHhcccccccHHHHHHHHHHHHHhh
Q psy875 113 -------------KLIRTVMRSIKKLY-------------KKHDNLDSACSELH-TVLSSDLCKDLASCYISLAQTYKDN 165 (480)
Q Consensus 113 -------------~~~~~~~~~l~~~y-------------~~~~~~~~A~~~~~-~~l~~~~~~~~~~~~~~la~~y~~~ 165 (480)
.....+|-.++.-| ..-..|......|- ..+ ...+.....+|-.+|...
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l----~KgvPslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQL----RKGVPSLFSNLKPLYKDP 156 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHH----hcCCchHHHHHHHHHcCh
Confidence 11111111111111 11123333333322 222 123445666676677655
Q ss_pred ccHHHHHHHHHHHHhh---------h----hcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy875 166 KQYNLAVDYFNKELRL---------H----ARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRT 232 (480)
Q Consensus 166 ~~~~~A~~~~~~al~~---------~----~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 232 (480)
.+..-....+..-+.. . ...+.....+++.+|..|...|+ +++|+++.++|++. .|...+
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~-~~~Al~~Id~aI~h------tPt~~e 229 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD-YEKALEYIDKAIEH------TPTLVE 229 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhc------CCCcHH
Confidence 4444333333332211 1 12445557788999999999999 99999999999987 677789
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 233 VMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
.|...|+++...|++.+|..+.+.+..+.
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELD 258 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999998764
No 220
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.72 E-value=9e-06 Score=73.91 Aligned_cols=212 Identities=14% Similarity=0.140 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~ 111 (480)
..+.-..+|..-+..-..+|+++.|-.+..++-+. .++. ........+.+ ....|+++.|..-..++++..+..
T Consensus 113 ~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~--~l~v~ltrarl-ll~~~d~~aA~~~v~~ll~~~pr~-- 186 (400)
T COG3071 113 HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDD--TLAVELTRARL-LLNRRDYPAARENVDQLLEMTPRH-- 186 (400)
T ss_pred cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCc--hHHHHHHHHHH-HHhCCCchhHHHHHHHHHHhCcCC--
Confidence 33334445555666666677777777777776665 2221 22233445566 344477777777777766654432
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc---cc-------------------------------------ccH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD---LC-------------------------------------KDL 151 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~---~~-------------------------------------~~~ 151 (480)
..++.....+|...|++.....+..+.-+.. +. ..-
T Consensus 187 ----~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~ 262 (400)
T COG3071 187 ----PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRND 262 (400)
T ss_pred ----hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcC
Confidence 3445566778888888888777665221100 00 111
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---------------------------CcHHHHHHHHHHHHHHHHhC
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---------------------------NFPEAVKTLGEIGDLYELQE 204 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---------------------------~~~~~~~~~~~l~~~~~~~~ 204 (480)
..+-..++.-+.+.|++++|.+..+.+++-..+ .++..+..+..||..+++.+
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~ 342 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK 342 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh
Confidence 334455677788999999999999888764111 13344578899999999999
Q ss_pred CchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 205 KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 205 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
. |.+|..+|+.|++.. .-...+..+|.++.++|+..+|.+.++++..+.
T Consensus 343 ~-w~kA~~~leaAl~~~-------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 343 L-WGKASEALEAALKLR-------PSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred H-HHHHHHHHHHHHhcC-------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9 999999999988762 234456789999999999999999999988543
No 221
>KOG1156|consensus
Probab=98.69 E-value=2.5e-06 Score=81.98 Aligned_cols=202 Identities=12% Similarity=0.060 Sum_probs=158.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV 118 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~ 118 (480)
.++..+.-.+..+||.+.++..+..++- .+....++...|.. ...+|+-++|..+-..++.... ....+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k----~~eHgeslAmkGL~-L~~lg~~~ea~~~vr~glr~d~------~S~vC 77 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK----FPEHGESLAMKGLT-LNCLGKKEEAYELVRLGLRNDL------KSHVC 77 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh----CCccchhHHhccch-hhcccchHHHHHHHHHHhccCc------ccchh
Confidence 3455555667889999999999999886 55556666677888 6666999999999998887432 23568
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875 119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD 198 (480)
Q Consensus 119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~ 198 (480)
+..+|.+++..++|++|+++|+.|+.+.++. ..++..++.+-.++++|+-..+.-.+-++. .+..-..|...+.
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN--~qilrDlslLQ~QmRd~~~~~~tr~~LLql----~~~~ra~w~~~Av 151 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDN--LQILRDLSLLQIQMRDYEGYLETRNQLLQL----RPSQRASWIGFAV 151 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hhhhHHHHHHHHH
Confidence 8899999999999999999999999887554 478999999999999999988887777777 5666778999999
Q ss_pred HHHHhCCchHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875 199 LYELQEKPFELVVSTHEKALDLARQNKDDK--LIRTVMRSMKKLYKKHDKFTELEQIKTELK 258 (480)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 258 (480)
.+...|+ |..|....+..........+.. ...........+..+.|.+++|++.+....
T Consensus 152 s~~L~g~-y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 152 AQHLLGE-YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 9999999 9999998887766544223322 334455566777888888888887766554
No 222
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=5.6e-07 Score=74.62 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=82.6
Q ss_pred ChhhHHHhhccchhhhhhh-HHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHH
Q psy875 1 MRFKIALSRGIGLSDSLDS-ACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 79 (480)
Q Consensus 1 ~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 79 (480)
.|+.+.|.+|.. ||+++- ......+.......+.++.+++.+|..+...|+|+.|.+.|...+++ .|..-.+..
T Consensus 63 eRA~l~fERGvl-YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----Dp~y~Ya~l 137 (297)
T COG4785 63 ERAQLLFERGVL-YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAHL 137 (297)
T ss_pred HHHHHHHHhcch-hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----CCcchHHHh
Confidence 378899999999 999998 55566666777788899999999999999999999999999999999 666667778
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Q psy875 80 EIGDLYELQEKSFEIVQSTHEKALDL 105 (480)
Q Consensus 80 ~lg~~y~~~~~~~~~A~~~~~kAl~~ 105 (480)
+.|...|.- |+|.-|.+-+.+-..-
T Consensus 138 NRgi~~YY~-gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 138 NRGIALYYG-GRYKLAQDDLLAFYQD 162 (297)
T ss_pred ccceeeeec-CchHhhHHHHHHHHhc
Confidence 888884454 9999998777665443
No 223
>KOG0506|consensus
Probab=98.69 E-value=2.5e-08 Score=91.25 Aligned_cols=91 Identities=30% Similarity=0.454 Sum_probs=83.4
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCccCCCCCCcHHHHHH
Q psy875 383 PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA-GADPNDKVQDSAGWLPLHEAA 461 (480)
Q Consensus 383 ~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~g~tpl~~A~ 461 (480)
.++..++++|+..|++..++-+.-.|.|++.+|.+.+|+||.|+..|+.+++++|++. +.+++ ..|.-|+|||.-|.
T Consensus 504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~--~kDRw~rtPlDdA~ 581 (622)
T KOG0506|consen 504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPD--PKDRWGRTPLDDAK 581 (622)
T ss_pred ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCC--hhhccCCCcchHhH
Confidence 3466789999999999999999999999999999999999999999999999999985 67777 56999999999999
Q ss_pred HcCCHHHHHHHHHc
Q psy875 462 NHGHTDIVQALVSA 475 (480)
Q Consensus 462 ~~~~~~~~~~Ll~~ 475 (480)
..+|.+++++|-+.
T Consensus 582 ~F~h~~v~k~L~~~ 595 (622)
T KOG0506|consen 582 HFKHKEVVKLLEEA 595 (622)
T ss_pred hcCcHHHHHHHHHH
Confidence 99999999999764
No 224
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.68 E-value=2.1e-07 Score=69.59 Aligned_cols=96 Identities=29% Similarity=0.390 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG 197 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~ 197 (480)
++.++|.++...|++++|+.++++++...+.. ..++..+|.++...+++++|+.++++++.....+ ..++..+|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~ 75 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN--ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN----AKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----hhHHHHHH
Confidence 46789999999999999999999998776543 3678899999999999999999999999874332 36788999
Q ss_pred HHHHHhCCchHHHHHHHHHHHHH
Q psy875 198 DLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
.++...|+ +++|..++.+++..
T Consensus 76 ~~~~~~~~-~~~a~~~~~~~~~~ 97 (100)
T cd00189 76 LAYYKLGK-YEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHh-HHHHHHHHHHHHcc
Confidence 99999999 99999999888754
No 225
>KOG0543|consensus
Probab=98.68 E-value=3.7e-07 Score=83.29 Aligned_cols=133 Identities=21% Similarity=0.238 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-------------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-------------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH 182 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-------------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~ 182 (480)
+.....-|..|++.|+|..|..-|++++..-.. .....++.||+.+|.++++|.+|+.+..++|++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 445567899999999999999999987743321 123568999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHH
Q psy875 183 ARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTEL-EQIKTELKS 259 (480)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 259 (480)
.+....+++.-|.++..+|+ |+.|+..|++++++ .|....+...|..+..+...+.+. .+.|..+..
T Consensus 287 ---~~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 287 ---DPNNVKALYRRGQALLALGE-YDLARDDFQKALKL------EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred ---CCCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55567899999999999999 99999999999988 333345555666666665555443 444544443
No 226
>PLN03077 Protein ECB2; Provisional
Probab=98.68 E-value=2.7e-05 Score=83.41 Aligned_cols=127 Identities=15% Similarity=0.158 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 196 (480)
.+|+.+...|.+.|++++|.+.|++... ++ ..+|+.+...|.+.|++++|++.|++..+..- .|. ..++..+
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d-~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~--~Pd-~~t~~~l 395 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMET----KD-AVSWTAMISGYEKNGLPDKALETYALMEQDNV--SPD-EITIASV 395 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCC----CC-eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCC-ceeHHHH
Confidence 4566777777777777777777776432 11 24566777777777777777777776543311 111 1233444
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
-..+...|+ +++|.+.+..+.+. +.. ....++..|...|.+.|++++|.+.+++.
T Consensus 396 l~a~~~~g~-~~~a~~l~~~~~~~----g~~-~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 396 LSACACLGD-LDVGVKLHELAERK----GLI-SYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHhccch-HHHHHHHHHHHHHh----CCC-cchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 446666777 77777776665432 111 22346667788888888888888877653
No 227
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.67 E-value=3.4e-08 Score=57.47 Aligned_cols=29 Identities=48% Similarity=0.785 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 452 AGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 452 ~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+|.||||+|+..|+.+++++|+++|++++
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~ 29 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADIN 29 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 36777777777777777777777777764
No 228
>KOG0705|consensus
Probab=98.67 E-value=8.3e-08 Score=89.96 Aligned_cols=97 Identities=25% Similarity=0.274 Sum_probs=80.3
Q ss_pred chHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q psy875 337 ESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDS 416 (480)
Q Consensus 337 ~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~ 416 (480)
..-|+.|........+-+|+.+|........ ..+++|+|+||+||..|+..+.++|+.+|+|+-.+|.
T Consensus 625 gqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t------------~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda 692 (749)
T KOG0705|consen 625 GQQLLRAVAAEDLQTAILLLAHGSREEVNET------------CGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDA 692 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchhhhcc------------ccCCCCcchhhhhhhhcchhHHHHHHHhCccceeccc
Confidence 3456677777788888889999876654432 2355689999999999999999999999999999999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 417 AGWLPLHEAANHGHTDIVQALVSAGADPN 445 (480)
Q Consensus 417 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~ 445 (480)
.|+|+|.+|-..|.-+|+.+|+.+|+...
T Consensus 693 ~g~t~l~yar~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 693 HGRTALFYARQAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred CCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence 99999999999999999999999987655
No 229
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.67 E-value=4.4e-07 Score=85.76 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=81.7
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHH
Q psy875 80 EIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA 159 (480)
Q Consensus 80 ~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la 159 (480)
..|...+.. |+|++|+.+|.+|+.+.+.. ..++.++|.+|..+|++++|+..+++++...+ ....+++.+|
T Consensus 7 ~~a~~a~~~-~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg 77 (356)
T PLN03088 7 DKAKEAFVD-DDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKG 77 (356)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHH
Confidence 345554555 88888888888888764432 45677888888888888888888888887664 4456788888
Q ss_pred HHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCC
Q psy875 160 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 205 (480)
Q Consensus 160 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (480)
.+|..+|+|++|+.+|++++++...+ ..+...++.+......
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P~~----~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAPGD----SRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHh
Confidence 88888888888888888888884433 3445556666555544
No 230
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.64 E-value=3.9e-07 Score=68.08 Aligned_cols=94 Identities=22% Similarity=0.340 Sum_probs=49.1
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875 40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVM 119 (480)
Q Consensus 40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~ 119 (480)
++.+|.++...|++++|+..+.++++. .+....++..+|.+|... +++++|+.++++++...+... .++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~------~~~ 71 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL----DPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNA------KAY 71 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcch------hHH
Confidence 455555666666666666666666555 222224445555553333 556666666665555433211 344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhc
Q psy875 120 RSIKKLYKKHDNLDSACSELHTVLS 144 (480)
Q Consensus 120 ~~l~~~y~~~~~~~~A~~~~~~~l~ 144 (480)
..+|.++...|++++|..++.+++.
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 4555555555555555555555443
No 231
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.62 E-value=6.5e-08 Score=56.27 Aligned_cols=28 Identities=57% Similarity=0.807 Sum_probs=14.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 418 GWLPLHEAANHGHTDIVQALVSAGADPN 445 (480)
Q Consensus 418 g~t~l~~a~~~~~~~~~~~Ll~~g~~~~ 445 (480)
|+||||+|+..|+.+++++|+++|++++
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~ 29 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADIN 29 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 4455555555555555555555555554
No 232
>KOG1585|consensus
Probab=98.62 E-value=1.7e-05 Score=67.22 Aligned_cols=163 Identities=13% Similarity=0.138 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
-+.+|-..|........+.++..+|++|..++ .+...-.+.++-.-|.+ ... .++++|++.|++++.+....+...
T Consensus 70 AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~-len-v~Pd~AlqlYqralavve~~dr~~ 147 (308)
T KOG1585|consen 70 AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKA-LEN-VKPDDALQLYQRALAVVEEDDRDQ 147 (308)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH-hhc-CCHHHHHHHHHHHHHHHhccchHH
Confidence 45555556666666666666666666666665 22233334444444555 333 566666666666666665554444
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc----ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD----LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA 189 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 189 (480)
.-...+...+.++.+..+|++|-..+.+..... .-+.....+...-.+|....+|..|..+++..-++..-..+..
T Consensus 148 ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed 227 (308)
T KOG1585|consen 148 MAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSED 227 (308)
T ss_pred HHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHH
Confidence 444555566666666666666666665433211 1133334444455555556666666666666555533344444
Q ss_pred HHHHHHHHHHH
Q psy875 190 VKTLGEIGDLY 200 (480)
Q Consensus 190 ~~~~~~l~~~~ 200 (480)
..+..+|-..|
T Consensus 228 ~r~lenLL~ay 238 (308)
T KOG1585|consen 228 SRSLENLLTAY 238 (308)
T ss_pred HHHHHHHHHHh
Confidence 55555555444
No 233
>KOG0783|consensus
Probab=98.62 E-value=1.9e-08 Score=98.07 Aligned_cols=79 Identities=33% Similarity=0.497 Sum_probs=73.4
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A 460 (480)
|.-|+|+||.++..+...++++|+.+|++++..|. .|+||||-|...|+++|+-.|+.+|.... +.|+.|.+||..-
T Consensus 49 D~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~--i~Dkeglsplq~~ 126 (1267)
T KOG0783|consen 49 DRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLR--IKDKEGLSPLQFL 126 (1267)
T ss_pred HhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceE--EecccCCCHHHHH
Confidence 33499999999999999999999999999999985 69999999999999999999999998888 6699999999987
Q ss_pred HH
Q psy875 461 AN 462 (480)
Q Consensus 461 ~~ 462 (480)
++
T Consensus 127 ~r 128 (1267)
T KOG0783|consen 127 SR 128 (1267)
T ss_pred hh
Confidence 76
No 234
>KOG0522|consensus
Probab=98.61 E-value=1.2e-07 Score=88.50 Aligned_cols=87 Identities=31% Similarity=0.544 Sum_probs=73.8
Q ss_pred hHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC
Q psy875 387 TALHVAAARGNLTLVQSLLKQ--GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG 464 (480)
Q Consensus 387 ~~l~~a~~~~~~~~~~~ll~~--g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~ 464 (480)
.|+|+++.....+-+...+.. +..++.+|..|.||||.|+..|+...++.|+..|+++. ++|..||+|||-|+..|
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~--~kN~~gWs~L~EAv~~g 99 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS--IKNNEGWSPLHEAVSTG 99 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc--ccccccccHHHHHHHcC
Confidence 458999998877655553332 45678889999999999999999999999999999999 66999999999999999
Q ss_pred CHHHHHHHHHc
Q psy875 465 HTDIVQALVSA 475 (480)
Q Consensus 465 ~~~~~~~Ll~~ 475 (480)
+.+++..++.+
T Consensus 100 ~~q~i~~vlr~ 110 (560)
T KOG0522|consen 100 NEQIITEVLRH 110 (560)
T ss_pred CHHHHHHHHHH
Confidence 99988776653
No 235
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.60 E-value=1.9e-06 Score=88.45 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
..-.+++.+|.+|-.+|++++|...|++++++ .+..+.+++++|.. +... ++++|+.++.+|+..
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~----D~~n~~aLNn~AY~-~ae~-dL~KA~~m~~KAV~~--------- 178 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKA----DRDNPEIVKKLATS-YEEE-DKEKAITYLKKAIYR--------- 178 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CcccHHHHHHHHHH-HHHh-hHHHHHHHHHHHHHH---------
Confidence 33468899999999999999999999999999 67888899999999 4554 999999999999876
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------------------ccHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------------------KDLASCYISLAQTYKDNKQYNLAVDYFN 176 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------------------~~~~~~~~~la~~y~~~~~~~~A~~~~~ 176 (480)
|...++|.++.+++.+.+...+. ...+..+.-+=..|...++|++++++++
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 33334555555555544433332 2334455556689999999999999999
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875 177 KELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 177 ~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~ 222 (480)
.++++.+. ...+...++.+|. ++ |.. ...+++.+++..
T Consensus 248 ~iL~~~~~----n~~a~~~l~~~y~--~k-Y~~-~~~~ee~l~~s~ 285 (906)
T PRK14720 248 KILEHDNK----NNKAREELIRFYK--EK-YKD-HSLLEDYLKMSD 285 (906)
T ss_pred HHHhcCCc----chhhHHHHHHHHH--HH-ccC-cchHHHHHHHhc
Confidence 99999444 3455777888886 44 544 667777777644
No 236
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=4e-06 Score=78.22 Aligned_cols=147 Identities=11% Similarity=0.034 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHH
Q psy875 76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY 155 (480)
Q Consensus 76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (480)
.+.+..+..++.. |++++|+..++..+...+ +. .+.....+.++...++.++|.+.+++++...|.. ....
T Consensus 307 aa~YG~A~~~~~~-~~~d~A~~~l~~L~~~~P---~N---~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~ 377 (484)
T COG4783 307 AAQYGRALQTYLA-GQYDEALKLLQPLIAAQP---DN---PYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQ 377 (484)
T ss_pred HHHHHHHHHHHHh-cccchHHHHHHHHHHhCC---CC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHH
Confidence 3445556664443 677777766666443322 22 2333456777777777777777777777665543 3556
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy875 156 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMR 235 (480)
Q Consensus 156 ~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 235 (480)
.++|.+|.+.|++.+|+..++..+.- .+..+..|..||.+|..+|+ -.+|...+
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~----~p~dp~~w~~LAqay~~~g~-~~~a~~A~--------------------- 431 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFN----DPEDPNGWDLLAQAYAELGN-RAEALLAR--------------------- 431 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhc----CCCCchHHHHHHHHHHHhCc-hHHHHHHH---------------------
Confidence 67777777777777777777766554 34445667777777777777 55444333
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q psy875 236 SMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 236 ~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
++.|.-.|++++|...+..+.+
T Consensus 432 --AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 432 --AEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred --HHHHHhCCCHHHHHHHHHHHHH
Confidence 4445556666666666655544
No 237
>KOG0495|consensus
Probab=98.56 E-value=1e-05 Score=77.85 Aligned_cols=200 Identities=13% Similarity=0.066 Sum_probs=152.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV 118 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~ 118 (480)
.+...+..++..|+...|...+.+|.+. .+++.++ |..--.+ .....+++.|...+.+|..... ...+
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~-~pnseei---wlaavKl-e~en~e~eraR~llakar~~sg-------TeRv 653 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEA-NPNSEEI---WLAAVKL-EFENDELERARDLLAKARSISG-------TERV 653 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHh-CCCcHHH---HHHHHHH-hhccccHHHHHHHHHHHhccCC-------cchh
Confidence 4556677778889999999999999988 4443333 3333333 3444789999999999887433 1356
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875 119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD 198 (480)
Q Consensus 119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~ 198 (480)
++.-+.+...+++.++|+.+++++++..+ .....|..+|+++.++++.+.|.+.|...++.++ .....|..++.
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp--~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP----~~ipLWllLak 727 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFP--DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP----NSIPLWLLLAK 727 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCC--chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC----CCchHHHHHHH
Confidence 66777888889999999999999997774 5568899999999999999999999999988854 44557888999
Q ss_pred HHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875 199 LYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
+-...|+ .-.|...++++.-- .|.....+....++-.+.|+.+.|.....++++-..+
T Consensus 728 leEk~~~-~~rAR~ildrarlk------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 728 LEEKDGQ-LVRARSILDRARLK------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHHHhcc-hhhHHHHHHHHHhc------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 9999998 99999999888533 2223344555666778899999999999888774433
No 238
>KOG0705|consensus
Probab=98.55 E-value=2.5e-07 Score=86.88 Aligned_cols=88 Identities=27% Similarity=0.338 Sum_probs=77.3
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCC--CC--CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC
Q psy875 389 LHVAAARGNLTLVQSLLKQGHPV--KV--QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG 464 (480)
Q Consensus 389 l~~a~~~~~~~~~~~ll~~g~~~--~~--~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~ 464 (480)
|..|+...+...+-+|+.+|... |. -+..|+|+||+||+.|+..+.++|+=+|+|+- .+|..|+|+|.+|.+.|
T Consensus 628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~--~rda~g~t~l~yar~a~ 705 (749)
T KOG0705|consen 628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM--ARDAHGRTALFYARQAG 705 (749)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccce--ecccCCchhhhhHhhcc
Confidence 56677777888889999998653 32 24578999999999999999999999999999 67999999999999999
Q ss_pred CHHHHHHHHHcCCC
Q psy875 465 HTDIVQALVSAGAE 478 (480)
Q Consensus 465 ~~~~~~~Ll~~ga~ 478 (480)
.-+|+.+|+.+|+-
T Consensus 706 sqec~d~llq~gcp 719 (749)
T KOG0705|consen 706 SQECIDVLLQYGCP 719 (749)
T ss_pred cHHHHHHHHHcCCC
Confidence 99999999999974
No 239
>KOG1128|consensus
Probab=98.55 E-value=1.5e-06 Score=84.50 Aligned_cols=167 Identities=16% Similarity=0.152 Sum_probs=130.6
Q ss_pred HHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHH
Q psy875 45 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKK 124 (480)
Q Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~ 124 (480)
..|...|++-.=..+|++|.++ .++... .+...+|...+.+ ++|.++.++++.++++.. ....+++.+|.
T Consensus 458 ~lyc~LGDv~~d~s~yEkawEl-sn~~sa--rA~r~~~~~~~~~-~~fs~~~~hle~sl~~np------lq~~~wf~~G~ 527 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWEL-SNYISA--RAQRSLALLILSN-KDFSEADKHLERSLEINP------LQLGTWFGLGC 527 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHH-hhhhhH--HHHHhhccccccc-hhHHHHHHHHHHHhhcCc------cchhHHHhccH
Confidence 3444555655566677777777 322222 2344555553444 999999999999998843 34678999999
Q ss_pred HHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC
Q psy875 125 LYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE 204 (480)
Q Consensus 125 ~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (480)
+..+.++++.|.++|...+...| +.+.+++|++..|...++-.+|...+++|++-. .....+|.|.-.+....|
T Consensus 528 ~ALqlek~q~av~aF~rcvtL~P--d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn----~~~w~iWENymlvsvdvg 601 (777)
T KOG1128|consen 528 AALQLEKEQAAVKAFHRCVTLEP--DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN----YQHWQIWENYMLVSVDVG 601 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCC--CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC----CCCCeeeechhhhhhhcc
Confidence 99999999999999999997765 455889999999999999999999999999873 334567778888889999
Q ss_pred CchHHHHHHHHHHHHHHHHcCCcH
Q psy875 205 KPFELVVSTHEKALDLARQNKDDK 228 (480)
Q Consensus 205 ~~~~~A~~~~~~al~~~~~~~~~~ 228 (480)
. +++|+..|.+-+.+.+...++.
T Consensus 602 e-~eda~~A~~rll~~~~~~~d~~ 624 (777)
T KOG1128|consen 602 E-FEDAIKAYHRLLDLRKKYKDDE 624 (777)
T ss_pred c-HHHHHHHHHHHHHhhhhcccch
Confidence 9 9999999999998877666544
No 240
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=7.2e-06 Score=76.57 Aligned_cols=152 Identities=18% Similarity=0.106 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
....+.|-.+..++..|++++|...++..+.. .|+..+.+...+.+ +...++.++|.+.+++++...+..
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~----~P~N~~~~~~~~~i-~~~~nk~~~A~e~~~kal~l~P~~----- 373 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA----QPDNPYYLELAGDI-LLEANKAKEAIERLKKALALDPNS----- 373 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh----CCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHhcCCCc-----
Confidence 45567888999999999999999999997666 55666666778999 555599999999999999885422
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
.....++|..|.+.|++.+|+..++..+...+ +....|..||..|..+|+-.+|...+
T Consensus 374 -~~l~~~~a~all~~g~~~eai~~L~~~~~~~p--~dp~~w~~LAqay~~~g~~~~a~~A~------------------- 431 (484)
T COG4783 374 -PLLQLNLAQALLKGGKPQEAIRILNRYLFNDP--EDPNGWDLLAQAYAELGNRAEALLAR------------------- 431 (484)
T ss_pred -cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHhCchHHHHHHH-------------------
Confidence 44567999999999999999999999886554 44477899999999999988876554
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875 195 EIGDLYELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A~~~~~~al~~~ 221 (480)
+..|+..|+ +++|+..+..+.+..
T Consensus 432 --AE~~~~~G~-~~~A~~~l~~A~~~~ 455 (484)
T COG4783 432 --AEGYALAGR-LEQAIIFLMRASQQV 455 (484)
T ss_pred --HHHHHhCCC-HHHHHHHHHHHHHhc
Confidence 555667888 999999988887654
No 241
>KOG2300|consensus
Probab=98.54 E-value=3.9e-05 Score=71.46 Aligned_cols=224 Identities=12% Similarity=0.055 Sum_probs=167.4
Q ss_pred HHHHHHHHHHH--hccccHHHHHHHHHHHHHHh--hccCchHH--------HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy875 37 ASCYISLAQTY--KDNKQYNLAVDYFNKELRLH--ARNFPEAV--------KTLGEIGDLYELQEKSFEIVQSTHEKALD 104 (480)
Q Consensus 37 ~~~~~~lg~~~--~~~~~~~~A~~~~~~al~~~--~~~~~~~~--------~~~~~lg~~y~~~~~~~~~A~~~~~kAl~ 104 (480)
..++..+-.+- ...|-|++|.++-.+++... .+..+... ..+-.+..+ ....|++.+|++-...+.+
T Consensus 273 icaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c-~lv~~~~~~al~~i~dm~~ 351 (629)
T KOG2300|consen 273 ICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMC-RLVRGDYVEALEEIVDMKN 351 (629)
T ss_pred hHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 33444443333 34688999999999998875 11111111 122333555 5566999999999999998
Q ss_pred hhhcCCCc----hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH-HHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy875 105 LARQNKDD----KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL-ASCYISLAQTYKDNKQYNLAVDYFNKEL 179 (480)
Q Consensus 105 ~~~~~~~~----~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~la~~y~~~~~~~~A~~~~~~al 179 (480)
.....+.+ ...+.+...+|......+.|+.|...|..+.......++ +.+-.++|.+|...++-+. ++ +++
T Consensus 352 w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed---~y-~~l 427 (629)
T KOG2300|consen 352 WCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED---LY-KAL 427 (629)
T ss_pred HHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH---HH-HHH
Confidence 88877654 334567888999999999999999999988876655444 7778889999999876443 32 333
Q ss_pred hhhhc-------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q psy875 180 RLHAR-------NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQ 252 (480)
Q Consensus 180 ~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 252 (480)
+.... .....+.+++..|...+.+++ +.||...+.+.++++...+........+..|+.+....||..++.+
T Consensus 428 d~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~-lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~n 506 (629)
T KOG2300|consen 428 DLIGPLNTNSLSSQRLEASILYVYGLFAFKQND-LNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRN 506 (629)
T ss_pred HhcCCCCCCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 33221 123456778888999999999 9999999999999997777778888889999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q psy875 253 IKTELKSLEEKLDL 266 (480)
Q Consensus 253 ~~~~~~~l~~~~~~ 266 (480)
..+-+..+..++..
T Consensus 507 mvrpamqlAkKi~D 520 (629)
T KOG2300|consen 507 MVRPAMQLAKKIPD 520 (629)
T ss_pred ccchHHHHHhcCCC
Confidence 99999998887654
No 242
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.53 E-value=2.6e-06 Score=65.92 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=28.5
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy875 40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALD 104 (480)
Q Consensus 40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~ 104 (480)
.+.+|.++-..|+.++|+.+|++++.. .-..+....++..+|.. +..+|++++|+..+++++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~last-lr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLAST-LRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Confidence 444444444455555555555554443 22223333444444444 2333455555544444443
No 243
>KOG0495|consensus
Probab=98.52 E-value=2.4e-05 Score=75.48 Aligned_cols=200 Identities=16% Similarity=0.099 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT 117 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~ 117 (480)
++|+.-+.+...+++.++|+++++++++. .+.....|..+|++ +.+.++.+.|...|...++..+.. .-
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~----fp~f~Kl~lmlGQi-~e~~~~ie~aR~aY~~G~k~cP~~------ip 720 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS----FPDFHKLWLMLGQI-EEQMENIEMAREAYLQGTKKCPNS------IP 720 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh----CCchHHHHHHHhHH-HHHHHHHHHHHHHHHhccccCCCC------ch
Confidence 34555566666677777777777777776 55555666677777 444477777777776666554322 22
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCc-----------
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF----------- 186 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~----------- 186 (480)
.+..++.+-...|+.-+|...+.++....|+. ...|...-..-.+.|+.++|.....+|++-++++.
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~--~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKN--ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc--chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhcc
Confidence 34456666666777777777777766444432 24455555556667788888777777776543310
Q ss_pred ---------------HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHH
Q psy875 187 ---------------PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELE 251 (480)
Q Consensus 187 ---------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (480)
...+..+..+|.+++...+ +++|.+.|.+|+++ .+...+++..+-.++...|.-+.-.
T Consensus 799 ~~~rkTks~DALkkce~dphVllaia~lfw~e~k-~~kar~Wf~Ravk~------d~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKK-IEKAREWFERAVKK------DPDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred CcccchHHHHHHHhccCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHcc------CCccchHHHHHHHHHHHhCCHHHHH
Confidence 0112456677888888888 88888888888776 4556666667777777777766666
Q ss_pred HHHHHH
Q psy875 252 QIKTEL 257 (480)
Q Consensus 252 ~~~~~~ 257 (480)
+.+.++
T Consensus 872 ev~~~c 877 (913)
T KOG0495|consen 872 EVLKKC 877 (913)
T ss_pred HHHHHH
Confidence 655554
No 244
>KOG0543|consensus
Probab=98.51 E-value=4.1e-06 Score=76.64 Aligned_cols=131 Identities=19% Similarity=0.193 Sum_probs=88.2
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhhhcCC--Cc-------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH
Q psy875 81 IGDLYELQEKSFEIVQSTHEKALDLARQNK--DD-------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151 (480)
Q Consensus 81 lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~--~~-------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~ 151 (480)
-|..|+.. |+|..|...|++|+....... +. .....++.|++.+|.++++|.+|+....++|...+. .
T Consensus 214 ~Gn~~fK~-gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~--N 290 (397)
T KOG0543|consen 214 RGNVLFKE-GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN--N 290 (397)
T ss_pred hhhHHHhh-chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC--c
Confidence 35553433 666666666666654433111 00 122457889999999999999999999999977754 4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKAL 218 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al 218 (480)
..+++.-|.++..+++|+.|+..|++++++.+.+ -.+...|..+..+.....+...+.|.+.+
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N----ka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSN----KAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999995554 33444455554444441223344554444
No 245
>KOG2300|consensus
Probab=98.50 E-value=0.00018 Score=67.16 Aligned_cols=212 Identities=11% Similarity=0.017 Sum_probs=159.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCch-------HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE-------AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~ 111 (480)
.+-.+..+..-.|++.+|++-...+.+.. ...+. .+.....+|.. ....+.|+.|...|..|.+....
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~-~r~p~~~Llr~~~~~ih~LlGly-s~sv~~~enAe~hf~~a~k~t~~--- 399 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWC-TRFPTPLLLRAHEAQIHMLLGLY-SHSVNCYENAEFHFIEATKLTES--- 399 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCchHHHHHhHHHHHHHHhhH-hhhcchHHHHHHHHHHHHHhhhH---
Confidence 34456667777999999999999998884 22222 23445556665 55558999999999999977543
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-- 184 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-- 184 (480)
....+.+-.|+|.+|...|+-+.-.+.++..-..... ...+.+++--|...+.++++.||..++.+.+++...
T Consensus 400 ~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed 479 (629)
T KOG2300|consen 400 IDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED 479 (629)
T ss_pred HHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh
Confidence 3446777889999999988765544444432211111 122556777788889999999999999999998644
Q ss_pred CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q psy875 185 NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK--FTELEQIKTE 256 (480)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~ 256 (480)
.....+..+..+|.+....|+ -.++....+-++.++++..+.+.+......+-++|...|+ .+.+.+.++.
T Consensus 480 ~~rL~a~~LvLLs~v~lslgn-~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 480 LNRLTACSLVLLSHVFLSLGN-TVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-hHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 344556778889999999999 9999999999999999999999999999999999999999 5555555544
No 246
>KOG0782|consensus
Probab=98.49 E-value=5.7e-07 Score=84.27 Aligned_cols=93 Identities=33% Similarity=0.452 Sum_probs=84.1
Q ss_pred cCCCCCchHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHH
Q psy875 380 LEKPRGETALHVAAARGNLTLVQSLLKQGHP--VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPL 457 (480)
Q Consensus 380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~--~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl 457 (480)
.++|+..+.||+|+..|+-++|++++++|.. .+..|..|.|+||-|+..++..+.++|++.|+.+- ..|..|.||-
T Consensus 894 ~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~--ktd~kg~tp~ 971 (1004)
T KOG0782|consen 894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLR--KTDSKGKTPQ 971 (1004)
T ss_pred eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhhe--ecccCCCChH
Confidence 3456789999999999999999999999875 46778899999999999999999999999999998 5699999999
Q ss_pred HHHHHcCCHHHHHHHHH
Q psy875 458 HEAANHGHTDIVQALVS 474 (480)
Q Consensus 458 ~~A~~~~~~~~~~~Ll~ 474 (480)
.-|-..|.+++.-+|-.
T Consensus 972 eraqqa~d~dlaayle~ 988 (1004)
T KOG0782|consen 972 ERAQQAGDPDLAAYLES 988 (1004)
T ss_pred HHHHhcCCchHHHHHhh
Confidence 99999999999988855
No 247
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.48 E-value=3.4e-06 Score=65.30 Aligned_cols=101 Identities=13% Similarity=0.055 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 195 (480)
.+.+++|.++-.+|+.++|+.+|++++..... +....++..+|.+|..+|++++|+..+++++.-.+++ +........
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~-~~~~~l~~f 80 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD-ELNAALRVF 80 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHH
Confidence 35678999999999999999999999975543 4446789999999999999999999999998764432 223445556
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKALD 219 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~al~ 219 (480)
++.++...|+ +++|+..+..++.
T Consensus 81 ~Al~L~~~gr-~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGR-PKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHH
Confidence 7889999999 9999999877764
No 248
>PLN03077 Protein ECB2; Provisional
Probab=98.48 E-value=7.1e-06 Score=87.78 Aligned_cols=191 Identities=13% Similarity=0.156 Sum_probs=120.3
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHH
Q psy875 42 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRS 121 (480)
Q Consensus 42 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~ 121 (480)
.+-..|.+.|++++|.+.|.+. .....+|+.+... +...|+.++|+..|++..+..... + ..+|..
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~--------~~d~~s~n~lI~~-~~~~G~~~~A~~lf~~M~~~g~~P-d----~~T~~~ 594 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH--------EKDVVSWNILLTG-YVAHGKGSMAVELFNRMVESGVNP-D----EVTFIS 594 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc--------CCChhhHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCC-C----cccHHH
Confidence 3445666667777776666553 1123456666666 344488888888887766432211 1 233445
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHH
Q psy875 122 IKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE 201 (480)
Q Consensus 122 l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~ 201 (480)
+-..+.+.|..++|.++|+.......-......|..+...|.+.|++++|.+.+++. .+ .|. ..+|..|-..+.
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~----~pd-~~~~~aLl~ac~ 668 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PI----TPD-PAVWGALLNACR 668 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CC----CCC-HHHHHHHHHHHH
Confidence 556677778888888888766532222222356777788888888888888877653 11 111 344555555665
Q ss_pred HhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 202 LQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 202 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
..|+ .+.+....++.+++ .+.....|..|+.+|...|++++|.+..+...+
T Consensus 669 ~~~~-~e~~e~~a~~l~~l------~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 669 IHRH-VELGELAAQHIFEL------DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HcCC-hHHHHHHHHHHHhh------CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 6666 77777666666655 233445677889999999999999988887765
No 249
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.47 E-value=3.5e-06 Score=75.38 Aligned_cols=91 Identities=8% Similarity=0.015 Sum_probs=47.2
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhccH
Q psy875 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQY 168 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~~ 168 (480)
|+|++|+..|++.+..++. ......+++.+|.+|+..|++++|+.+|++.+...++ +....+++.+|.+|..+|++
T Consensus 157 ~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred CCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 5555555555555554432 2223344455555555555555555555555544433 23345555555555555555
Q ss_pred HHHHHHHHHHHhhhh
Q psy875 169 NLAVDYFNKELRLHA 183 (480)
Q Consensus 169 ~~A~~~~~~al~~~~ 183 (480)
++|..+|++.++.++
T Consensus 234 ~~A~~~~~~vi~~yP 248 (263)
T PRK10803 234 AKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHHHHHHCc
Confidence 555555555555433
No 250
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.46 E-value=2.2e-06 Score=76.64 Aligned_cols=103 Identities=10% Similarity=0.073 Sum_probs=87.2
Q ss_pred HHHHHHHHHH-HhcCChHHHHHHHHHHhcccccccH-HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 117 TVMRSIKKLY-KKHDNLDSACSELHTVLSSDLCKDL-ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 117 ~~~~~l~~~y-~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
...+..+..+ ...|+|++|+..|++.+...|+... ..+++.+|.+|+..|+|++|+.+|++.++..++ ++....+++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~-s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK-SPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CcchhHHHH
Confidence 3445555544 6679999999999999988877543 678999999999999999999999999988665 466788999
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875 195 EIGDLYELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A~~~~~~al~~~ 221 (480)
.+|.++..+|+ +++|...|++.++..
T Consensus 222 klg~~~~~~g~-~~~A~~~~~~vi~~y 247 (263)
T PRK10803 222 KVGVIMQDKGD-TAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHHC
Confidence 99999999999 999999999887653
No 251
>KOG4162|consensus
Probab=98.46 E-value=5.2e-05 Score=74.63 Aligned_cols=209 Identities=17% Similarity=0.151 Sum_probs=144.1
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV 118 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~ 118 (480)
.|+.++..|...|.-..|+...++.... .. .+.....+...+.+|....+.+++++.|..+|+.... .........+
T Consensus 359 ~w~~~als~saag~~s~Av~ll~~~~~~-~~-~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~-~~~~~l~~~~ 435 (799)
T KOG4162|consen 359 RWYQLALSYSAAGSDSKAVNLLRESLKK-SE-QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLG-GQRSHLKPRG 435 (799)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhhccc-cc-CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhh-hhhhhhhhhH
Confidence 3444444444444444555544444443 11 1333455566677778888999999999999998662 2233445667
Q ss_pred HHHHHHHHHhcC-----------ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcH
Q psy875 119 MRSIKKLYKKHD-----------NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP 187 (480)
Q Consensus 119 ~~~l~~~y~~~~-----------~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~ 187 (480)
+..+|..|..+- ...++++.++++++..+... .+.+.++.-|..+++.+.|..+..+++++..+
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp--~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~--- 510 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP--LVIFYLALQYAEQRQLTSALDYAREALALNRG--- 510 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC---
Confidence 778888776653 36678888888887776544 66788999999999999999999999998443
Q ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875 188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE 262 (480)
Q Consensus 188 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~ 262 (480)
..+.+|..++.++..+++ +.+|+.....+++..... .........+-...++.++|+........+-+
T Consensus 511 ~~~~~whLLALvlSa~kr-~~~Al~vvd~al~E~~~N------~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we 578 (799)
T KOG4162|consen 511 DSAKAWHLLALVLSAQKR-LKEALDVVDAALEEFGDN------HVLMDGKIHIELTFNDREEALDTCIHKLALWE 578 (799)
T ss_pred ccHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHhhhh------hhhchhhhhhhhhcccHHHHHHHHHHHHHHHH
Confidence 346788999999999999 999999999998764321 11122234445557888888877776666544
No 252
>KOG0506|consensus
Probab=98.45 E-value=2.2e-07 Score=85.17 Aligned_cols=92 Identities=27% Similarity=0.307 Sum_probs=82.5
Q ss_pred CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCC
Q psy875 334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ-GHPVK 412 (480)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-g~~~~ 412 (480)
....-.++.|+..|.+..++.+.-.|.|++..+ -+.+|+||+|+..|+.+++++|++. +.+++
T Consensus 504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~D----------------yD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~ 567 (622)
T KOG0506|consen 504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKD----------------YDDRTALHVAAAEGHVEVVKFLLNACKVDPD 567 (622)
T ss_pred ccchhhhhhhhhcCCHHHHHHHHHhcccccccc----------------cccchhheeecccCceeHHHHHHHHHcCCCC
Confidence 444556788999999999999999999988753 4589999999999999999999987 89999
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHcC
Q psy875 413 VQDSAGWLPLHEAANHGHTDIVQALVSAG 441 (480)
Q Consensus 413 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g 441 (480)
.+|.+|+|||.-|..++|.+++++|-+.-
T Consensus 568 ~kDRw~rtPlDdA~~F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 568 PKDRWGRTPLDDAKHFKHKEVVKLLEEAQ 596 (622)
T ss_pred hhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence 99999999999999999999999998863
No 253
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.45 E-value=9.8e-06 Score=79.96 Aligned_cols=139 Identities=14% Similarity=0.197 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHh
Q psy875 36 LASCYISLAQTYKDN---KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK-------SFEIVQSTHEKALDL 105 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~-------~~~~A~~~~~kAl~~ 105 (480)
.+.-++..|.-|... ++..+|+.+|++|+++ .|+.+.++..++.+|....+ +...+.....+++.+
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l----dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS----EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 455667777776654 5588999999999999 77777777777777544311 223333444443333
Q ss_pred hhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC
Q psy875 106 ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN 185 (480)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~ 185 (480)
.. .+....++..+|..+...|++++|...+++++...+ . +.+|..+|.++...|++++|++.|++|+.+.+..
T Consensus 414 ~~----~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 414 PE----LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--S-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred cc----CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 11 122246788889999999999999999999998875 3 5789999999999999999999999999985543
No 254
>KOG4340|consensus
Probab=98.43 E-value=3.2e-05 Score=67.59 Aligned_cols=194 Identities=11% Similarity=0.053 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC-chHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD-DKLIR 116 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~-~~~~~ 116 (480)
..+..+|.+|+...+|..|-.+|++.-.+ .|....--..-++..|.- +.|..|+.... ...| +....
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql----~P~~~qYrlY~AQSLY~A-~i~ADALrV~~-------~~~D~~~L~~ 112 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQL----HPELEQYRLYQAQSLYKA-CIYADALRVAF-------LLLDNPALHS 112 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ChHHHHHHHHHHHHHHHh-cccHHHHHHHH-------HhcCCHHHHH
Confidence 35667788888888888888888876655 444433222234442233 55555544332 2222 33344
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 196 (480)
.+...-+.+.+..+++.-+....++ .+..+.+...++.|.+.++.|+|+.|++-|+.|++... ..+..-+++
T Consensus 113 ~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG----yqpllAYni 184 (459)
T KOG4340|consen 113 RVLQLQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG----YQPLLAYNL 184 (459)
T ss_pred HHHHHHHHHhcccccCcchHHHHHh----ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC----CCchhHHHH
Confidence 4555556666666666666555543 23335567788999999999999999999999999832 334456789
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHc------------------CC-----cHHHHHHHHHHHHHHHHcCChHHHHH
Q psy875 197 GDLYELQEKPFELVVSTHEKALDLARQN------------------KD-----DKLIRTVMRSMKKLYKKHDKFTELEQ 252 (480)
Q Consensus 197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~------------------~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~ 252 (480)
+.+++..|+ |+.|+++..+.++..-+. ++ ......++...+-++.+.|+++-|.+
T Consensus 185 ALaHy~~~q-yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e 262 (459)
T KOG4340|consen 185 ALAHYSSRQ-YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE 262 (459)
T ss_pred HHHHHhhhh-HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHH
Confidence 999999999 999999988877543221 11 12334555566667777777766553
No 255
>KOG3617|consensus
Probab=98.39 E-value=7.2e-05 Score=74.05 Aligned_cols=220 Identities=15% Similarity=0.195 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHH----h--hccCchHH----------HHHHHHHHHHHHhhccHHHHHHHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRL----H--ARNFPEAV----------KTLGEIGDLYELQEKSFEIVQSTH 99 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~--~~~~~~~~----------~~~~~lg~~y~~~~~~~~~A~~~~ 99 (480)
+-..|++.|.....+++.+.|+++|+|+-.. . ..+.+... ..|...|.. ....|+.+.|+.+|
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqY-lES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQY-LESVGEMDAALSFY 935 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHH-HhcccchHHHHHHH
Confidence 4457888899888999999999999997332 1 11111111 233444665 66669999999999
Q ss_pred HHHHHhhhcCCCc---------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc------ccccHHH-----
Q psy875 100 EKALDLARQNKDD---------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD------LCKDLAS----- 153 (480)
Q Consensus 100 ~kAl~~~~~~~~~---------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~------~~~~~~~----- 153 (480)
.+|-..+....-. ..-..+.+.||..|...|++.+|+.+|.++..-. .....-.
T Consensus 936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred HHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9987654322100 1112356789999999999999999998654221 1111111
Q ss_pred -------HHHHHHHHHHhhc-cHHHHHHHHHHH------Hhh------------hhc--CcHHHHHHHHHHHHHHHHhCC
Q psy875 154 -------CYISLAQTYKDNK-QYNLAVDYFNKE------LRL------------HAR--NFPEAVKTLGEIGDLYELQEK 205 (480)
Q Consensus 154 -------~~~~la~~y~~~~-~~~~A~~~~~~a------l~~------------~~~--~~~~~~~~~~~l~~~~~~~~~ 205 (480)
-....|..|.+.| +++.|...|.+| +++ ..+ ++..-+..+..-++.+....+
T Consensus 1016 al~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred HhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence 1223466666676 788888777653 333 111 222335566677788888788
Q ss_pred chHHHHHHHHHHHHHHHHc-----------------------C--CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 206 PFELVVSTHEKALDLARQN-----------------------K--DDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~-----------------------~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
|++|...+-.+-++.... + +......++..++++..++|.|..|-+-+.++
T Consensus 1096 -yekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1096 -YEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 999988776655322111 1 12345678889999999999999988766655
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.39 E-value=0.00018 Score=63.71 Aligned_cols=207 Identities=20% Similarity=0.231 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
.......+..+...+.+..++..+..+... .........+..+|.. ....+.+..++..+.+++...... .
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~ 129 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLL-LEALGKYEEALELLEKALALDPDP------D 129 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHH-HHHHhhHHHHHHHHHHHHcCCCCc------c
Confidence 456777888888899999999999888762 1145566677788888 455588999999999998765543 1
Q ss_pred HHHHHHHH-HHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 117 TVMRSIKK-LYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 117 ~~~~~l~~-~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
......+. ++...|++++|..+|.+++...+. ......+...+..+...+++++|+..+.+++...... ....+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 206 (291)
T COG0457 130 LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD---DAEALL 206 (291)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc---chHHHH
Confidence 11222333 899999999999999999763331 3456677777888889999999999999999884332 467788
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875 195 EIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE 262 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~ 262 (480)
.++..+...++ +++|...+.+++..... .......++..+...+.++++...+.+......
T Consensus 207 ~~~~~~~~~~~-~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 207 NLGLLYLKLGK-YEEALEYYEKALELDPD------NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HhhHHHHHccc-HHHHHHHHHHHHhhCcc------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 99999999999 99999999999887432 344556666677777778888888887766443
No 257
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.39 E-value=1.9e-06 Score=59.37 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=27.6
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875 158 LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD 219 (480)
Q Consensus 158 la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~ 219 (480)
+|..+...|+|++|+..|+++++. .|....++..+|.++..+|+ +++|+.+|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~----~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ----DPDNPEAWYLLGRILYQQGR-YDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC----STTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 444455555555555555555444 33344445555555555555 5555555554443
No 258
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.39 E-value=1.8e-06 Score=59.55 Aligned_cols=62 Identities=18% Similarity=0.387 Sum_probs=54.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
.+|..+...|+|++|+..|++++... |....++..+|.++..+|++++|+.+|+++++..++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 57899999999999999999999776 556789999999999999999999999999988443
No 259
>KOG0783|consensus
Probab=98.38 E-value=3.8e-07 Score=89.32 Aligned_cols=89 Identities=24% Similarity=0.317 Sum_probs=75.9
Q ss_pred hhhhhHhhhccCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCC
Q psy875 303 KEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEK 382 (480)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 382 (480)
.....+-+++-|++++|.++..+.. +++++|+.+|+|++.++.-
T Consensus 41 c~n~anikD~~GR~alH~~~S~~k~----------------------~~l~wLlqhGidv~vqD~E-------------- 84 (1267)
T KOG0783|consen 41 CQNLANIKDRYGRTALHIAVSENKN----------------------SFLRWLLQHGIDVFVQDEE-------------- 84 (1267)
T ss_pred hhhhhhHHHhhccceeeeeeccchh----------------------HHHHHHHhcCceeeecccc--------------
Confidence 3344566777788888887766555 8999999999999998653
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHc
Q psy875 383 PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANH 428 (480)
Q Consensus 383 ~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~ 428 (480)
+|.||||.|..+|+++++-.|+.+|......|.+|.+||...++-
T Consensus 85 -SG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r~ 129 (1267)
T KOG0783|consen 85 -SGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSRV 129 (1267)
T ss_pred -ccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhhc
Confidence 499999999999999999999999999999999999999987773
No 260
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.36 E-value=0.0002 Score=62.11 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHH
Q psy875 75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLAS 153 (480)
Q Consensus 75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~ 153 (480)
...+++-|.. ..+.|+|++|..+|++.....+ -.+....+...++..+.+.++|++|+.+.++.+...|. ++...
T Consensus 34 ~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p---~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 34 ASELYNEGLT-ELQKGNYEEAIKYFEALDSRHP---FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCC---CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 4456666777 5666999999999988775433 33444677888999999999999999999998887765 66677
Q ss_pred HHHHHHHHHHhh--------ccHHHHHHHHHHHHhhhhcC-------------cHHHHHHHHHHHHHHHHhCCchHHHHH
Q psy875 154 CYISLAQTYKDN--------KQYNLAVDYFNKELRLHARN-------------FPEAVKTLGEIGDLYELQEKPFELVVS 212 (480)
Q Consensus 154 ~~~~la~~y~~~--------~~~~~A~~~~~~al~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~A~~ 212 (480)
+++..|.++... .-..+|+.-|++.+.-+++. ....+..-..+|..|.+.|. |--|..
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~-~~AA~n 188 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA-YVAAIN 188 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHH
Confidence 888888777633 33345666666666554441 11234445678999999999 999998
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy875 213 THEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKT 255 (480)
Q Consensus 213 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 255 (480)
.++..++- ..+.+....++..+...|.++|-.++|....+
T Consensus 189 R~~~v~e~---y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 189 RFEEVLEN---YPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHhc---cccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 88887654 55667788899999999999999999887654
No 261
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=5.5e-05 Score=63.09 Aligned_cols=203 Identities=12% Similarity=0.049 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
.+.-+..++..|..|-..|-..-|.--|.+++.+ .|....+++.+|.. +...|+|+.|.+.|...+++.+.
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai----~P~m~~vfNyLG~Y-l~~a~~fdaa~eaFds~~ELDp~---- 131 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIY-LTQAGNFDAAYEAFDSVLELDPT---- 131 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc----CCCcHHHHHHHHHH-HHhcccchHHHHHhhhHhccCCc----
Confidence 4567888999999999999999999999999999 78888888889877 56669999999999999988443
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHH-HHhhhhcCcHHHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNK-ELRLHARNFPEAVK 191 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~-al~~~~~~~~~~~~ 191 (480)
.-.+..|.|..+..-|+|+-|.+-+.+-.+.++....-..+..+-. ..-++.+|..-+.+ +....+ .......
T Consensus 132 --y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~-e~WG~~i 205 (297)
T COG4785 132 --YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDK-EQWGWNI 205 (297)
T ss_pred --chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccH-hhhhHHH
Confidence 2456788999999999999999999888877766544333333322 22356666655433 332211 1111111
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNK-DDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
+-+..|+ ..+ ...++++..-++... -.....+++..||+.|...|+.++|...++-++.
T Consensus 206 -------V~~yLgk-iS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 206 -------VEFYLGK-ISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred -------HHHHHhh-ccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1122233 211 122333332222111 1234567888899999999999998888887654
No 262
>KOG4555|consensus
Probab=98.34 E-value=4.1e-05 Score=58.33 Aligned_cols=101 Identities=20% Similarity=0.189 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
...+-..|......|+.+.|++.|.+++.+ -|..+.+|++.++.|..+ |+.++|+.-+++|++++... .+...
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l----~P~raSayNNRAQa~RLq-~~~e~ALdDLn~AleLag~~--trtac 115 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCL----APERASAYNNRAQALRLQ-GDDEEALDDLNKALELAGDQ--TRTAC 115 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh----cccchHhhccHHHHHHHc-CChHHHHHHHHHHHHhcCcc--chHHH
Confidence 444555677777888999999999999888 777788888888886666 88899999999998886532 44556
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhc
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLS 144 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~ 144 (480)
.++...|.+|..+|+-+.|..-|..+-.
T Consensus 116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 116 QAFVQRGLLYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHHH
Confidence 6788888888888888888888886653
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.33 E-value=0.00017 Score=62.57 Aligned_cols=171 Identities=13% Similarity=0.086 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
-+.-+++-|....+.|+|++|++.|+..... -...+..-.+...++.+++.. ++|+.|+.+.++-+.+.+.. +..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~-~~y~~A~~~~drFi~lyP~~---~n~ 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKN-GEYDLALAYIDRFIRLYPTH---PNA 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhCCCC---CCh
Confidence 4567889999999999999999999999877 444444556778889996666 99999999999999887654 445
Q ss_pred HHHHHHHHHHHHhcC--------ChHHHHHHHHHHhcccccc---------------cHHHHHHHHHHHHHhhccHHHHH
Q psy875 116 RTVMRSIKKLYKKHD--------NLDSACSELHTVLSSDLCK---------------DLASCYISLAQTYKDNKQYNLAV 172 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~--------~~~~A~~~~~~~l~~~~~~---------------~~~~~~~~la~~y~~~~~~~~A~ 172 (480)
..+++..|..+...= --.+|+.-++..+...|+. .++.--..+|..|.+.|.|.-|+
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 566777777765442 2345666777777766662 12333445799999999999999
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHH
Q psy875 173 DYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVST 213 (480)
Q Consensus 173 ~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 213 (480)
..+++.++..+. .+..-.++..+..+|..+|- .++|...
T Consensus 188 nR~~~v~e~y~~-t~~~~eaL~~l~eaY~~lgl-~~~a~~~ 226 (254)
T COG4105 188 NRFEEVLENYPD-TSAVREALARLEEAYYALGL-TDEAKKT 226 (254)
T ss_pred HHHHHHHhcccc-ccchHHHHHHHHHHHHHhCC-hHHHHHH
Confidence 999999988554 44556788889999999999 8877553
No 264
>KOG2047|consensus
Probab=98.28 E-value=0.00016 Score=69.91 Aligned_cols=216 Identities=14% Similarity=0.150 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC----
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK---- 110 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~---- 110 (480)
.....+..+|..|...|+.+.|...|++|.+.--+...+.+..|...|.. -....+++.|+...++|...-+...
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waem-Elrh~~~~~Al~lm~~A~~vP~~~~~~~y 463 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEM-ELRHENFEAALKLMRRATHVPTNPELEYY 463 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhhhcCCCchhhhhh
Confidence 35667899999999999999999999999987333345678889999988 6666899999999999986543311
Q ss_pred --Cc------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875 111 --DD------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH 182 (480)
Q Consensus 111 --~~------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~ 182 (480)
.. .....++...+.+-...|-++.-...|.+.+...-. ...+-.|.|..+....-+++|.+.|++.+.++
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria--TPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA--TPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 11 222345667788888889999999999988865432 23566788888889899999999999999987
Q ss_pred hc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875 183 AR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK 258 (480)
Q Consensus 183 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 258 (480)
+- +.......|......-+...+ .+.|...|++|++... +.....+|...+.+-...|--..|+..|+++.
T Consensus 542 k~p~v~diW~tYLtkfi~rygg~k-lEraRdLFEqaL~~Cp----p~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 542 KWPNVYDIWNTYLTKFIKRYGGTK-LERARDLFEQALDGCP----PEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 64 223333444444444333446 8999999999998431 34445566677777777888888887777653
No 265
>KOG0521|consensus
Probab=98.27 E-value=9.6e-07 Score=89.99 Aligned_cols=88 Identities=43% Similarity=0.585 Sum_probs=81.3
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHc
Q psy875 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANH 463 (480)
Q Consensus 384 ~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~ 463 (480)
.|.|+||.|+..+...++++|+++|+++|.+|..|+||+|.+...|+...+..|+++|++.+ +.+..|.+|+++|...
T Consensus 655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~--a~~~~~~~~l~~a~~~ 732 (785)
T KOG0521|consen 655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPN--AFDPDGKLPLDIAMEA 732 (785)
T ss_pred cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccccc--ccCccCcchhhHHhhh
Confidence 48999999999999999999999999999999999999999999999999999999999999 5589999999999877
Q ss_pred CCHHHHHHHH
Q psy875 464 GHTDIVQALV 473 (480)
Q Consensus 464 ~~~~~~~~Ll 473 (480)
.+.+++.++.
T Consensus 733 ~~~d~~~l~~ 742 (785)
T KOG0521|consen 733 ANADIVLLLR 742 (785)
T ss_pred ccccHHHHHh
Confidence 7777766553
No 266
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.27 E-value=0.0014 Score=60.10 Aligned_cols=216 Identities=10% Similarity=0.002 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
..+.....-|..-...|+|.+|.+...++-+. .+.-..+|..-+.. -.++|+++.|-.|+.+|-+.... +.
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~----~e~p~l~~l~aA~A-A~qrgd~~~an~yL~eaae~~~~---~~- 152 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEH----GEQPVLAYLLAAEA-AQQRGDEDRANRYLAEAAELAGD---DT- 152 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc----CcchHHHHHHHHHH-HHhcccHHHHHHHHHHHhccCCC---ch-
Confidence 34666777888888899999999999987665 45555556666777 66669999999999988766432 22
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh-------------
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL------------- 181 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~------------- 181 (480)
..++...+.+....|+++.|..-..+.+...+.+. .+......+|...|+|.+...+..+.-+.
T Consensus 153 -l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~--~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~ 229 (400)
T COG3071 153 -LAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP--EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ 229 (400)
T ss_pred -HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh--HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH
Confidence 34566788999999999999999999987775543 56666789999999999888776543211
Q ss_pred ------hhc-----Cc--------------HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH---------H-----
Q psy875 182 ------HAR-----NF--------------PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA---------R----- 222 (480)
Q Consensus 182 ------~~~-----~~--------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~---------~----- 222 (480)
.++ .. ...+..-..++.-+...|. .++|.+..+++++-. .
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~-~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~ 308 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGD-HDEAQEIIEDALKRQWDPRLCRLIPRLRPG 308 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHhccChhHHHHHhhcCCC
Confidence 000 00 0113344556777788899 999999999988411 0
Q ss_pred -----------HcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875 223 -----------QNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 223 -----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
.....+.....+..||..+.+.+.+.+|..+++.+.....+
T Consensus 309 d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 309 DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 00111222266778999999999999999999977765443
No 267
>KOG3785|consensus
Probab=98.25 E-value=6.6e-05 Score=67.24 Aligned_cols=211 Identities=14% Similarity=0.091 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH----------H
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKAL----------D 104 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl----------~ 104 (480)
+....-.++|.+++..|+|++|+..|.-+.+- ..--+..+.++|.+++.. |.|.+|.....+|- .
T Consensus 55 EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~----~~~~~el~vnLAcc~FyL-g~Y~eA~~~~~ka~k~pL~~RLlfh 129 (557)
T KOG3785|consen 55 EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK----DDAPAELGVNLACCKFYL-GQYIEAKSIAEKAPKTPLCIRLLFH 129 (557)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc----CCCCcccchhHHHHHHHH-HHHHHHHHHHhhCCCChHHHHHHHH
Confidence 33567788999999999999999999876553 223345567888885555 99999988766652 2
Q ss_pred hhhcCCCchHHHHHHH----------HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHH
Q psy875 105 LARQNKDDKLIRTVMR----------SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDY 174 (480)
Q Consensus 105 ~~~~~~~~~~~~~~~~----------~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~ 174 (480)
++-+.++.+.+..... .++.+.+..-.|.+|++.|++.+... ++....-.++|.+|.++.=|+-+.+.
T Consensus 130 lahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 130 LAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred HHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 3344445444444333 55666777778999999999998655 55556677899999999999888877
Q ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHHHHh--CC---------------chHHHHHHHHHHHHHHHHc--------CCcHH
Q psy875 175 FNKELRLHARNFPEAVKTLGEIGDLYELQ--EK---------------PFELVVSTHEKALDLARQN--------KDDKL 229 (480)
Q Consensus 175 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~--~~---------------~~~~A~~~~~~al~~~~~~--------~~~~~ 229 (480)
++--++-.++ ...+.+..+...++. |+ .|..+...++.-+-+++.. +-...
T Consensus 208 l~vYL~q~pd----StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~ 283 (557)
T KOG3785|consen 208 LKVYLRQFPD----STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH 283 (557)
T ss_pred HHHHHHhCCC----cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh
Confidence 7666655332 222333333333332 22 0112221111111000000 00122
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875 230 IRTVMRSMKKLYKKHDKFTELEQIKTE 256 (480)
Q Consensus 230 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 256 (480)
+.++..+|.-.|.++++.++|....+.
T Consensus 284 IPEARlNL~iYyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 284 IPEARLNLIIYYLNQNDVQEAISLCKD 310 (557)
T ss_pred ChHhhhhheeeecccccHHHHHHHHhh
Confidence 345667888899999999998876653
No 268
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=2.8e-05 Score=73.41 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=101.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY 200 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 200 (480)
.|-.++...++++.|+..+++.....+ + +...++.++...++..+|+..++++++.. +..+..+...+..+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p--e---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~----p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP--E---VAVLLARVYLLMNEEVEAIRLLNEALKEN----PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC--c---HHHHHHHHHHhcCcHHHHHHHHHHHHHhC----CCCHHHHHHHHHHH
Confidence 344556667899999999999876653 2 34558999999999999999999999763 33377888899999
Q ss_pred HHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 201 ELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
...++ ++.|+...++|..+ .|.....+..|+.+|..+|++++|+..+..+
T Consensus 245 l~k~~-~~lAL~iAk~av~l------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKK-YELALEIAKKAVEL------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCC-HHHHHHHHHHHHHh------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999 99999999999988 6778889999999999999999999877644
No 269
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.22 E-value=3.4e-05 Score=76.16 Aligned_cols=135 Identities=19% Similarity=0.121 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHH--hhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC--------ChHHHHHHHHHHhc
Q psy875 75 VKTLGEIGDLYEL--QEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD--------NLDSACSELHTVLS 144 (480)
Q Consensus 75 ~~~~~~lg~~y~~--~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~--------~~~~A~~~~~~~l~ 144 (480)
+..++..|.-|.. ..+++..|+.+|++|+++.+. .+.++..++.+|.... +..++....++++.
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD------FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3344444554322 235588999999999998543 3555555566554432 23455555666555
Q ss_pred ccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875 145 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 145 ~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~ 221 (480)
....+....+|..+|..+...|++++|..++++|+.+. +. ..+|..+|.++...|+ +++|++.|++|+.+.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~----ps-~~a~~~lG~~~~~~G~-~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE----MS-WLNYVLLGKVYELKGD-NRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC
Confidence 43344446788889999999999999999999999993 33 6789999999999999 999999999998773
No 270
>KOG0782|consensus
Probab=98.20 E-value=1.7e-05 Score=74.63 Aligned_cols=102 Identities=26% Similarity=0.291 Sum_probs=87.3
Q ss_pred CCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHH
Q psy875 325 NDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSL 404 (480)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l 404 (480)
++.+.-..+...-++||.|+..|+.++|++++++|..-.... .+..|+|+||-|+..++..+..+|
T Consensus 888 ~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~--------------~de~get~lhkaa~~~~r~vc~~l 953 (1004)
T KOG0782|consen 888 NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDM--------------ADETGETALHKAACQRNRAVCQLL 953 (1004)
T ss_pred cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHH--------------HhhhhhHHHHHHHHhcchHHHHHH
Confidence 444455666777799999999999999999999997543321 123499999999999999999999
Q ss_pred HhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc
Q psy875 405 LKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440 (480)
Q Consensus 405 l~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 440 (480)
++.|+..-..|..|.||-..|-..|..++..||-.+
T Consensus 954 vdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 954 VDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred HhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence 999999999999999999999999999999998765
No 271
>KOG4234|consensus
Probab=98.19 E-value=3.5e-05 Score=63.41 Aligned_cols=98 Identities=20% Similarity=0.250 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLC---KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
.+..-|.-++..|+|++|..-|..++...+. .....+|.|-|.+..+++.++.|++-..+++++ .|....++.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel----~pty~kAl~ 172 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL----NPTYEKALE 172 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc----CchhHHHHH
Confidence 3445678889999999999999999987765 233678899999999999999999999999999 566677888
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 195 EIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
..|.+|.++.+ |++|++-|++.++.
T Consensus 173 RRAeayek~ek-~eealeDyKki~E~ 197 (271)
T KOG4234|consen 173 RRAEAYEKMEK-YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHhhhh-HHHHHHHHHHHHHh
Confidence 88999999999 99999999998876
No 272
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.17 E-value=1.7e-05 Score=72.43 Aligned_cols=153 Identities=17% Similarity=0.094 Sum_probs=100.9
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHH
Q psy875 80 EIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA 159 (480)
Q Consensus 80 ~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la 159 (480)
..|.+ +...|++++|++.+.+. ++ .........+|..+++++.|.+.++.......+.. ..+++
T Consensus 107 ~~A~i-~~~~~~~~~AL~~l~~~-------~~----lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~----l~qLa 170 (290)
T PF04733_consen 107 LAATI-LFHEGDYEEALKLLHKG-------GS----LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI----LTQLA 170 (290)
T ss_dssp HHHHH-HCCCCHHHHHHCCCTTT-------TC----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH----HHHHH
T ss_pred HHHHH-HHHcCCHHHHHHHHHcc-------Cc----ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH----HHHHH
Confidence 33566 44458888877666442 11 23334566789999999999999988776654422 22333
Q ss_pred H--HHHhh--ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy875 160 Q--TYKDN--KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMR 235 (480)
Q Consensus 160 ~--~y~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 235 (480)
. +.... +++.+|...|++..+. .+..+..++.++.++..+|+ |++|...+++|+.. .+....++.
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~----~~~t~~~lng~A~~~l~~~~-~~eAe~~L~~al~~------~~~~~d~La 239 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDK----FGSTPKLLNGLAVCHLQLGH-YEEAEELLEEALEK------DPNDPDTLA 239 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCC----S--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCCC-------CCHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHh------ccCCHHHHH
Confidence 2 33333 4699999999985543 23345678889999999999 99999999888643 233456788
Q ss_pred HHHHHHHHcCCh-HHHHHHHHHHHH
Q psy875 236 SMKKLYKKHDKF-TELEQIKTELKS 259 (480)
Q Consensus 236 ~l~~~~~~~g~~-~~A~~~~~~~~~ 259 (480)
++..+...+|+. +.+.++..+...
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHH
Confidence 899999999998 556666665443
No 273
>KOG2796|consensus
Probab=98.16 E-value=0.00021 Score=61.49 Aligned_cols=147 Identities=15% Similarity=0.121 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~ 111 (480)
+.+....+.+.+..++.-.|.|.-++..+.+.++. +++........+|.+ .++.||.+.|..|++..-+...+..+
T Consensus 172 W~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~---~~e~~p~L~s~Lgr~-~MQ~GD~k~a~~yf~~vek~~~kL~~ 247 (366)
T KOG2796|consen 172 WRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY---YPEQEPQLLSGLGRI-SMQIGDIKTAEKYFQDVEKVTQKLDG 247 (366)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh---CCcccHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHhhhhc
Confidence 45567778889999999999999999999999986 234444455678999 88889999999999988877666666
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
...-..+..+.+.+|.-.++|..|...|.+.+..+ +..+.+-++.|.+....|+...|++..+.+++..+.
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 66667788999999999999999999999888554 344566788999999999999999999999888555
No 274
>KOG3617|consensus
Probab=98.15 E-value=0.00062 Score=67.74 Aligned_cols=210 Identities=15% Similarity=0.135 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH----HhhhcCCCchHH----------HHHH
Q psy875 55 LAVDYFNKELRLH-ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKAL----DLARQNKDDKLI----------RTVM 119 (480)
Q Consensus 55 ~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl----~~~~~~~~~~~~----------~~~~ 119 (480)
+++..+.+|+++. ..+..-.-.+|++.|.- ....++.+.|++||+|+- ++.+-..+.+.. ...|
T Consensus 837 Qs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~-Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~ 915 (1416)
T KOG3617|consen 837 QSQGMWSEAFEIAETKDRIHLRNTYYNYAKY-LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLY 915 (1416)
T ss_pred HhcccHHHHHHHHhhccceehhhhHHHHHHH-HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHH
Confidence 3333444444443 22222234567777776 455599999999999864 222221111111 1345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhccc-------------------ccccHHHHHHHHHHHHHhhccHHHHHHHHHHH--
Q psy875 120 RSIKKLYKKHDNLDSACSELHTVLSSD-------------------LCKDLASCYISLAQTYKDNKQYNLAVDYFNKE-- 178 (480)
Q Consensus 120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~-------------------~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~a-- 178 (480)
..-|......|+.+-|+.+|..+-... ....--.+.+.||+-|...|++.+|+.+|.+|
T Consensus 916 ~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 916 SWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 567788888999999999998544211 11112235667999999999999999999875
Q ss_pred ----HhhhhcCcHH--H--------HHHHHHHHHHHHHhC-CchHHHHHHHHHH------HHHHHHcCC-----------
Q psy875 179 ----LRLHARNFPE--A--------VKTLGEIGDLYELQE-KPFELVVSTHEKA------LDLARQNKD----------- 226 (480)
Q Consensus 179 ----l~~~~~~~~~--~--------~~~~~~l~~~~~~~~-~~~~~A~~~~~~a------l~~~~~~~~----------- 226 (480)
+++.+.+... . ..-....|..|...| + ...|...|.+| ++++-+...
T Consensus 996 fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~-~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL 1074 (1416)
T KOG3617|consen 996 FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGY-AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL 1074 (1416)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchh-hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc
Confidence 4555442111 0 111233456666676 5 77777766653 333322221
Q ss_pred -cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875 227 -DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 227 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~ 266 (480)
...-...+..-++++....+|++|..++-.+.++...+..
T Consensus 1075 d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~Alql 1115 (1416)
T KOG3617|consen 1075 DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQL 1115 (1416)
T ss_pred CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222345667899999999999999998888887766654
No 275
>KOG2376|consensus
Probab=98.15 E-value=0.00063 Score=65.29 Aligned_cols=149 Identities=10% Similarity=0.035 Sum_probs=79.8
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc--------
Q psy875 41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD-------- 112 (480)
Q Consensus 41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~-------- 112 (480)
+..+.+.++.+..++|++.++-+-. .. -.+...-|++ ...+++|++|...|+...+-.....+.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~~~----~~---~~ll~L~AQv-lYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a 154 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGLDR----LD---DKLLELRAQV-LYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA 154 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcccc----cc---hHHHHHHHHH-HHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 5677778888888888888772111 11 1233345777 444488888888887664322111110
Q ss_pred -----------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc--------cc-----ccHHHHHHHHHHHH
Q psy875 113 -----------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD--------LC-----KDLASCYISLAQTY 162 (480)
Q Consensus 113 -----------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~--------~~-----~~~~~~~~~la~~y 162 (480)
...-..++|.+-++...|+|.+|++.+++++.+. .. .++..+...|+.++
T Consensus 155 ~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 155 VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 0111234466666666666666666666552111 10 23345555666666
Q ss_pred HhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875 163 KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG 197 (480)
Q Consensus 163 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~ 197 (480)
..+|+.++|...|...++....+.+..+.+-+||-
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLv 269 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLV 269 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchh
Confidence 66666666666666555554444444444444443
No 276
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.15 E-value=0.001 Score=67.06 Aligned_cols=220 Identities=10% Similarity=0.007 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
..+..--..|.+...+|++++|+++.+.++... .......+.++..+|.+ ....|++++|..+.+.+.+++++.+...
T Consensus 456 l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a-~~~~G~~~~Al~~~~~a~~~a~~~~~~~ 534 (894)
T COG2909 456 LLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA-AHIRGELTQALALMQQAEQMARQHDVYH 534 (894)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH-HHHhchHHHHHHHHHHHHHHHHHcccHH
Confidence 455566667888889999999999999999985 33344456778889999 5555999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHhcCC--hHHHHHHHHHHhc--ccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---Cc
Q psy875 114 LIRTVMRSIKKLYKKHDN--LDSACSELHTVLS--SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NF 186 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~--~~~A~~~~~~~l~--~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~ 186 (480)
....+....+.+...+|+ +++...-+...-. ....+.-.......+.++...-+++.+..-..++++.... .+
T Consensus 535 l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~ 614 (894)
T COG2909 535 LALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQP 614 (894)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccch
Confidence 888888899999999993 4444444442211 1111211111222233333333367777666666666333 22
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875 187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK-DDKLIRTVMRSMKKLYKKHDKFTELEQIKTE 256 (480)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 256 (480)
......++.++.+++..|+ +++|...+.+......... .......++.....+...+|+..+|.....+
T Consensus 615 ~~~~~~~~~LA~l~~~~Gd-l~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 615 LLSRLALSMLAELEFLRGD-LDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2333344689999999999 9999999999988877664 3344566667777788899999998887765
No 277
>KOG0522|consensus
Probab=98.14 E-value=7.2e-06 Score=76.86 Aligned_cols=60 Identities=33% Similarity=0.681 Sum_probs=54.6
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc
Q psy875 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440 (480)
Q Consensus 381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 440 (480)
.|+.|.||||.|+..|+...++.|+..|+++..+|..||+|||.|+..|...++..++.+
T Consensus 51 ~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 51 RDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred ccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999999998877666554
No 278
>PRK15331 chaperone protein SicA; Provisional
Probab=98.13 E-value=0.00014 Score=58.82 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=82.5
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 191 (480)
+.......+..|.-++..|++++|...|+-.....+ .....+..||.++..+++|++|+..|..+..+..+++ .
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp----~ 106 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY----R 106 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC----C
Confidence 344556667889999999999999999996554332 2345678999999999999999999999988855443 3
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALD 219 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~ 219 (480)
..+..|.+|..+|+ ...|...|..++.
T Consensus 107 p~f~agqC~l~l~~-~~~A~~~f~~a~~ 133 (165)
T PRK15331 107 PVFFTGQCQLLMRK-AAKARQCFELVNE 133 (165)
T ss_pred ccchHHHHHHHhCC-HHHHHHHHHHHHh
Confidence 46789999999999 9999999999876
No 279
>KOG0511|consensus
Probab=98.12 E-value=1.3e-05 Score=71.83 Aligned_cols=61 Identities=30% Similarity=0.316 Sum_probs=57.0
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy875 386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446 (480)
Q Consensus 386 ~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~ 446 (480)
.--|..||+.|+.+.|+.|++-|.++|.+|....+||.+|+..||.++|++|+++|+-...
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r 97 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR 97 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc
Confidence 4458899999999999999999999999999999999999999999999999999997763
No 280
>KOG4234|consensus
Probab=98.12 E-value=3.5e-05 Score=63.41 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHH
Q psy875 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIR 231 (480)
Q Consensus 153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 231 (480)
..+-.-|+-++..|+|++|..-|..|+++++. ........|.+-|.+..++++ ++.|+.-+.+|+++ .+...
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKaiel------~pty~ 168 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAIEL------NPTYE 168 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhHhc------CchhH
Confidence 34455688899999999999999999999887 445667788899999999999 99999999999998 67778
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 232 TVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 232 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
.++...+.+|.++..|++|+.-|++..++
T Consensus 169 kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 169 KALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 88889999999999999999999887764
No 281
>KOG4340|consensus
Probab=98.12 E-value=0.0002 Score=62.78 Aligned_cols=186 Identities=12% Similarity=0.048 Sum_probs=129.7
Q ss_pred hccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q psy875 48 KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYK 127 (480)
Q Consensus 48 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~ 127 (480)
....+|..|++++..-.+. .+..-..+..+|.+||.. .+|..|-.+|.+.-...++. ..--.--+...+
T Consensus 21 I~d~ry~DaI~~l~s~~Er----~p~~rAgLSlLgyCYY~~-Q~f~~AA~CYeQL~ql~P~~------~qYrlY~AQSLY 89 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELER----SPRSRAGLSLLGYCYYRL-QEFALAAECYEQLGQLHPEL------EQYRLYQAQSLY 89 (459)
T ss_pred HHHhhHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhChHH------HHHHHHHHHHHH
Confidence 3456788888887765555 443344567889997777 88999999998877665432 222234466677
Q ss_pred hcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCch
Q psy875 128 KHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPF 207 (480)
Q Consensus 128 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (480)
+.+.|..|+.......... .-...+...-+.+.+..+++.-+....++-- ....+....+.|.+.++.|+ |
T Consensus 90 ~A~i~ADALrV~~~~~D~~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp------~en~Ad~~in~gCllykegq-y 160 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP------SENEADGQINLGCLLYKEGQ-Y 160 (459)
T ss_pred HhcccHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcccccCcchHHHHHhcc------CCCccchhccchheeecccc-H
Confidence 8888999988877655321 1123444445666666677776666554321 12346678889999999999 9
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 208 ELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
+.|.+-|+.|+... +.. .-+-++++.++.+.|++..|+++-.+.++
T Consensus 161 EaAvqkFqaAlqvs---Gyq---pllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 161 EAAVQKFQAALQVS---GYQ---PLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred HHHHHHHHHHHhhc---CCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 99999999998762 222 33456789999999999999999988776
No 282
>KOG2384|consensus
Probab=98.11 E-value=8.7e-06 Score=65.87 Aligned_cols=83 Identities=23% Similarity=0.177 Sum_probs=59.7
Q ss_pred CccccCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCC
Q psy875 376 TTSLLEKPRGETALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGW 454 (480)
Q Consensus 376 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~ 454 (480)
..++.+|--|+|+++.|+..|+.+.+.+|+..| +.+...|..|.+++.+|-..|+..++..|.+.-.+.........+.
T Consensus 3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~nss~~e 82 (223)
T KOG2384|consen 3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSSRDE 82 (223)
T ss_pred CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccCCCCC
Confidence 345566667888888888888888888888888 7788888888888888888888888888887744444322223444
Q ss_pred cHHH
Q psy875 455 LPLH 458 (480)
Q Consensus 455 tpl~ 458 (480)
++..
T Consensus 83 ~lfy 86 (223)
T KOG2384|consen 83 ALFY 86 (223)
T ss_pred ccch
Confidence 4443
No 283
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=3.4e-05 Score=67.39 Aligned_cols=100 Identities=12% Similarity=0.109 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccccccc-HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875 119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG 197 (480)
Q Consensus 119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~ 197 (480)
.++.|.-++..|+|..|..-|...+...|... ...+++.||.+++.+|+|+.|...|..+.+-.++ .+..+..++-+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~-s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK-SPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-CCCChHHHHHHH
Confidence 67888899999999999999999998888744 4789999999999999999999999999887555 456688999999
Q ss_pred HHHHHhCCchHHHHHHHHHHHHH
Q psy875 198 DLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
.+...+|+ .++|...|++.++.
T Consensus 223 ~~~~~l~~-~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGN-TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcC-HHHHHHHHHHHHHH
Confidence 99999999 99999999998764
No 284
>KOG0520|consensus
Probab=98.10 E-value=4e-06 Score=85.05 Aligned_cols=130 Identities=23% Similarity=0.269 Sum_probs=97.4
Q ss_pred CCCCcCCCchHHHHHHhhCcHHHHHHHHhc-CCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhc
Q psy875 329 SNLNLYNIESITISRNRLGAQEVRKLLSLL-NADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ 407 (480)
Q Consensus 329 ~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~ 407 (480)
+....+.+.++++.++..++..+++.+++. |...... +.+|...+|+++..|....+..+.-.
T Consensus 567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~el----------------d~d~qgV~hfca~lg~ewA~ll~~~~ 630 (975)
T KOG0520|consen 567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLEL----------------DRDGQGVIHFCAALGYEWAFLPISAD 630 (975)
T ss_pred cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhh----------------cccCCChhhHhhhcCCceeEEEEeec
Confidence 345677788899999999999999888886 4333322 23477778886666655555555567
Q ss_pred CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC----ccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875 408 GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND----KVQDSAGWLPLHEAANHGHTDIVQALVS 474 (480)
Q Consensus 408 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~----~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 474 (480)
|..++.+|..||||||||+..|+..++..|+..|++... ....-.|.|+-.+|..+|+..+..+|-+
T Consensus 631 ~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse 701 (975)
T KOG0520|consen 631 GVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE 701 (975)
T ss_pred ccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence 889999999999999999999999999999987766653 1122358899999999998887776644
No 285
>PRK15331 chaperone protein SicA; Provisional
Probab=98.10 E-value=6e-05 Score=60.83 Aligned_cols=109 Identities=10% Similarity=-0.013 Sum_probs=79.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q psy875 26 TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDL 105 (480)
Q Consensus 26 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~ 105 (480)
+....+..++.....+..|.-++..|++++|...|+-..-+ .+....-+..+|.++... ++|++|+..|-.|..+
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~----d~~n~~Y~~GLaa~~Q~~-k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY----DFYNPDYTMGLAAVCQLK-KQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 33445556667777888888888889999998888876666 333344567888885444 8899998888888877
Q ss_pred hhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q psy875 106 ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS 145 (480)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~ 145 (480)
....+.+ .+..|.+|+.+|+.++|..+|+.++..
T Consensus 101 ~~~dp~p------~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 101 LKNDYRP------VFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ccCCCCc------cchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 6543332 456788888888888888888877753
No 286
>KOG3609|consensus
Probab=98.10 E-value=1.9e-05 Score=78.53 Aligned_cols=127 Identities=22% Similarity=0.149 Sum_probs=96.5
Q ss_pred CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875 334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV 413 (480)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~ 413 (480)
.....-...|+..|+...|+..++........ .+-.|+-|.++|+.|..+.+.+++++|++.+..+
T Consensus 23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~ln------------inc~d~lGr~al~iai~nenle~~eLLl~~~~~~-- 88 (822)
T KOG3609|consen 23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLN------------INCRDPLGRLALHIAIDNENLELQELLLDTSSEE-- 88 (822)
T ss_pred chhhHHHHHHHHcCChHHHHHHHHhccccccc------------hhccChHhhhceecccccccHHHHHHHhcCcccc--
Confidence 33445667899999999998887765442211 1123455999999999999999999999987555
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC--------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPND--------KVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~--------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
.-+|-.|+..|..++|+.++.+-..... ...-.-+.||+..|+..++.+|+++|+.+|+.+
T Consensus 89 -----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i 157 (822)
T KOG3609|consen 89 -----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI 157 (822)
T ss_pred -----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence 2378899999999999999987332210 011234789999999999999999999999976
No 287
>KOG3616|consensus
Probab=98.10 E-value=0.00043 Score=67.96 Aligned_cols=208 Identities=13% Similarity=0.142 Sum_probs=123.0
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHH------HHHhhccCchH-HHHHHHHHHHHHHhhccHHHHHHHHHHHH--------
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKE------LRLHARNFPEA-VKTLGEIGDLYELQEKSFEIVQSTHEKAL-------- 103 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~a------l~~~~~~~~~~-~~~~~~lg~~y~~~~~~~~~A~~~~~kAl-------- 103 (480)
.|-..|.+|-...++++|++||++. +++..-..|.. ...-...|.- ..+.|+++.|+.+|-+|-
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~h-l~~~~q~daainhfiea~~~~kaiea 741 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDH-LEQIGQLDAAINHFIEANCLIKAIEA 741 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHH-HHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence 4556677777788889999988764 33320011221 1111222433 444477777776654443
Q ss_pred -----------HhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHH
Q psy875 104 -----------DLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAV 172 (480)
Q Consensus 104 -----------~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~ 172 (480)
.+.....+.......|-.++.-|...|+|+.|.+.|.++- ....--..|.+.|+|++|.
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHH
Confidence 2222222222222334577788888888888888887642 1122334567778888887
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHH------HHHHHHHHHcCC------------cHHHHHHH
Q psy875 173 DYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTH------EKALDLARQNKD------------DKLIRTVM 234 (480)
Q Consensus 173 ~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~------~~al~~~~~~~~------------~~~~~~~~ 234 (480)
+...+... +......|...+.-..+.|+ |.+|...| .+|+.+..+.+- .....+..
T Consensus 812 kla~e~~~-----~e~t~~~yiakaedldehgk-f~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 812 KLAEECHG-----PEATISLYIAKAEDLDEHGK-FAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred HHHHHhcC-----chhHHHHHHHhHHhHHhhcc-hhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 76665432 33444556666666777777 76666554 244444444332 23345667
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875 235 RSMKKLYKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
..++.-+...|+...|...+-++...+..
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d~kaa 914 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGDFKAA 914 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhHHHH
Confidence 78899999999999999888877665544
No 288
>KOG3785|consensus
Probab=98.09 E-value=0.00037 Score=62.59 Aligned_cols=84 Identities=14% Similarity=0.012 Sum_probs=55.7
Q ss_pred ccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh
Q psy875 49 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK 128 (480)
Q Consensus 49 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~ 128 (480)
...+|.-|+..++-.+.. . ..+....-..+|.+|+.. |+|++|+..|.-+..- . +.+ +....+++-++..
T Consensus 34 s~rDytGAislLefk~~~-~--~EEE~~~~lWia~C~fhL-gdY~~Al~~Y~~~~~~--~--~~~--~el~vnLAcc~Fy 103 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNL-D--REEEDSLQLWIAHCYFHL-GDYEEALNVYTFLMNK--D--DAP--AELGVNLACCKFY 103 (557)
T ss_pred hcccchhHHHHHHHhhcc-c--hhhhHHHHHHHHHHHHhh-ccHHHHHHHHHHHhcc--C--CCC--cccchhHHHHHHH
Confidence 456888888887776655 2 122234456678885554 8999998888766541 1 111 3345688888888
Q ss_pred cCChHHHHHHHHHH
Q psy875 129 HDNLDSACSELHTV 142 (480)
Q Consensus 129 ~~~~~~A~~~~~~~ 142 (480)
+|.|.+|.....++
T Consensus 104 Lg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 104 LGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHhhC
Confidence 89898888876654
No 289
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=9.4e-05 Score=69.89 Aligned_cols=114 Identities=17% Similarity=0.154 Sum_probs=94.8
Q ss_pred HhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc
Q psy875 87 LQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK 166 (480)
Q Consensus 87 ~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~ 166 (480)
...+.++.|+..+++..+..+ .+...++.++...++-.+|+..+.+++...+. -+..+...|..+...+
T Consensus 180 ~~t~~~~~ai~lle~L~~~~p---------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~--d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDP---------EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ--DSELLNLQAEFLLSKK 248 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCC---------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcC
Confidence 334889999999988664421 13446899999999999999999999965543 3677888899999999
Q ss_pred cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy875 167 QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEK 216 (480)
Q Consensus 167 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 216 (480)
+++.|++..++++++ .|....+|..|+.+|...|+ ++.|+..++.
T Consensus 249 ~~~lAL~iAk~av~l----sP~~f~~W~~La~~Yi~~~d-~e~ALlaLNs 293 (395)
T PF09295_consen 249 KYELALEIAKKAVEL----SPSEFETWYQLAECYIQLGD-FENALLALNS 293 (395)
T ss_pred CHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHhcCC-HHHHHHHHhc
Confidence 999999999999999 67778899999999999999 9999876654
No 290
>KOG4555|consensus
Probab=98.07 E-value=0.00016 Score=55.23 Aligned_cols=101 Identities=23% Similarity=0.193 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 196 (480)
..+-.-|......|+.+.|++.|.+++...| ..+.+|+|-+..+.-+|+.++|++-+++++++..........++..-
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P--~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAP--ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcc--cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 3445667888899999999999999997764 45689999999999999999999999999999877777788899999
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHH
Q psy875 197 GDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 197 ~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
|.+|..+|+ -+.|..-|+.|-.+
T Consensus 122 g~lyRl~g~-dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 122 GLLYRLLGN-DDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHhCc-hHHHHHhHHHHHHh
Confidence 999999999 89999999998765
No 291
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.04 E-value=1.7e-05 Score=74.45 Aligned_cols=69 Identities=16% Similarity=0.071 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHH-HHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA-SCYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
+.....+.++|.+|..+|+|++|+..|++++...++...+ .+|+++|.+|..+|++++|+.++++++++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667899999999999999999999999999988775433 67999999999999999999999999987
No 292
>KOG1070|consensus
Probab=98.04 E-value=0.00082 Score=70.65 Aligned_cols=195 Identities=14% Similarity=0.089 Sum_probs=141.3
Q ss_pred HHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875 45 QTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR 120 (480)
Q Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~ 120 (480)
..+...++.++|.+..++|+.-. .....+.+.+|.|+-..| |.-+.-.+.|++|.+... + ..+|.
T Consensus 1466 af~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y----G~eesl~kVFeRAcqycd----~---~~V~~ 1534 (1710)
T KOG1070|consen 1466 AFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY----GTEESLKKVFERACQYCD----A---YTVHL 1534 (1710)
T ss_pred HHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh----CcHHHHHHHHHHHHHhcc----h---HHHHH
Confidence 34556899999999999999874 222334455666665553 555666677777776643 1 34678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY 200 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 200 (480)
.|..+|...+++++|.++|+..++... +...+|...|..++.+.+-+.|...+.+|++..+. ........-.|.+-
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk--~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK--QEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch--hhhHHHHHHHHHHH
Confidence 899999999999999999998886654 45578889999999999999999999999988665 23455666778888
Q ss_pred HHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 201 ELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
++.|+ .+.+...|+-.+.. .|-..+.+.-..+.-.++|+.+-+...|+++..+.
T Consensus 1611 Fk~GD-aeRGRtlfEgll~a------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1611 FKYGD-AERGRTLFEGLLSA------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhcCC-chhhHHHHHHHHhh------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 88898 88888888777654 23334444445555566666666666666666544
No 293
>KOG2047|consensus
Probab=98.02 E-value=0.0035 Score=60.99 Aligned_cols=204 Identities=13% Similarity=0.127 Sum_probs=135.6
Q ss_pred hhHHHhhccchhhhhhhHHHH--hh---hhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--------hc
Q psy875 3 FKIALSRGIGLSDSLDSACTE--LH---TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--------AR 69 (480)
Q Consensus 3 ~~~~~~~g~~~~~~l~~~~~~--~~---~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~~ 69 (480)
+++|..+|.. |...++...+ ++ .......-++++.+|..-|..-.+..+++.|+++.+.|..+- .+
T Consensus 387 ~~Lw~~fakl-Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 387 GTLWVEFAKL-YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hhHHHHHHHH-HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 3567777777 6666663333 21 222344556889999999999999999999999999997651 11
Q ss_pred cCchHHH------HHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q psy875 70 NFPEAVK------TLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVL 143 (480)
Q Consensus 70 ~~~~~~~------~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l 143 (480)
..+-... .|...+.. ....|-++.....|++.+++---. ..+..|.|..+....-|++|.+.|++.+
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~Dl-eEs~gtfestk~vYdriidLriaT------Pqii~NyAmfLEeh~yfeesFk~YErgI 538 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADL-EESLGTFESTKAVYDRIIDLRIAT------PQIIINYAMFLEEHKYFEESFKAYERGI 538 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence 2222222 33333444 444566777777777777653211 2344677888888888999999999998
Q ss_pred cccccccHHHHHHHHHH---HHHhhccHHHHHHHHHHHHhhhhcCcHHHH-HHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy875 144 SSDLCKDLASCYISLAQ---TYKDNKQYNLAVDYFNKELRLHARNFPEAV-KTLGEIGDLYELQEKPFELVVSTHEKAL 218 (480)
Q Consensus 144 ~~~~~~~~~~~~~~la~---~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~A~~~~~~al 218 (480)
...+-|....+++..-. .-+.-...+.|...|++|++.++ +..+ .+|...|..-.+-|. -..|+..|++|-
T Consensus 539 ~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp---p~~aKtiyLlYA~lEEe~GL-ar~amsiyerat 613 (835)
T KOG2047|consen 539 SLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP---PEHAKTIYLLYAKLEEEHGL-ARHAMSIYERAT 613 (835)
T ss_pred ccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHH
Confidence 88877776655554322 22333578899999999998654 3333 345556777777777 778888888765
No 294
>PRK11906 transcriptional regulator; Provisional
Probab=98.02 E-value=0.00035 Score=65.94 Aligned_cols=164 Identities=10% Similarity=-0.035 Sum_probs=116.8
Q ss_pred HHHHHHHHHhc---cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHhhh
Q psy875 39 CYISLAQTYKD---NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ--------EKSFEIVQSTHEKALDLAR 107 (480)
Q Consensus 39 ~~~~lg~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~--------~~~~~~A~~~~~kAl~~~~ 107 (480)
.++..|..... ....+.|+.+|.+|+.. ..-.|..+.+|..++.+|... ..+-.+|....++|+++..
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNK-SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC
Confidence 44666666644 34667899999999933 223777888888888885443 1234566777777777644
Q ss_pred cCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcH
Q psy875 108 QNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP 187 (480)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~ 187 (480)
. -+.++..+|.+....++++.|...|++++... |+.+.+++..|.+..-.|+.++|++++++++++. |.
T Consensus 336 ~------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs---P~ 404 (458)
T PRK11906 336 V------DGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE---PR 404 (458)
T ss_pred C------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---ch
Confidence 3 26788899999999999999999999999666 6677889999999999999999999999999983 22
Q ss_pred HHHHHHHHHHH-HHHHhCCchHHHHHHHHH
Q psy875 188 EAVKTLGEIGD-LYELQEKPFELVVSTHEK 216 (480)
Q Consensus 188 ~~~~~~~~l~~-~~~~~~~~~~~A~~~~~~ 216 (480)
........+.. .|+. .. .+.|+..|-+
T Consensus 405 ~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 432 (458)
T PRK11906 405 RRKAVVIKECVDMYVP-NP-LKNNIKLYYK 432 (458)
T ss_pred hhHHHHHHHHHHHHcC-Cc-hhhhHHHHhh
Confidence 22222222222 4443 33 5777776644
No 295
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.02 E-value=0.00012 Score=66.85 Aligned_cols=157 Identities=12% Similarity=0.069 Sum_probs=105.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV 118 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~ 118 (480)
.....|.++...|++++|++.+.+.- ...+....-.+| ...++++.|.+.++++.++ .++..+ +
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~~---------~lE~~al~Vqi~-L~~~R~dlA~k~l~~~~~~----~eD~~l--~ 167 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKGG---------SLELLALAVQIL-LKMNRPDLAEKELKNMQQI----DEDSIL--T 167 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTTT---------CHHHHHHHHHHH-HHTT-HHHHHHHHHHHHCC----SCCHHH--H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHccC---------cccHHHHHHHHH-HHcCCHHHHHHHHHHHHhc----CCcHHH--H
Confidence 45667888889999999998876531 122333445674 4459999998888776543 333222 2
Q ss_pred HHHHHHHHHhcC--ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875 119 MRSIKKLYKKHD--NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196 (480)
Q Consensus 119 ~~~l~~~y~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 196 (480)
....+++....| ++.+|...|++..... +....+++.+|.++..+|+|++|.+.++++++. .+..+.++.|+
T Consensus 168 qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~----~~~~~d~LaNl 241 (290)
T PF04733_consen 168 QLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK----DPNDPDTLANL 241 (290)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-----CCHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----ccCCHHHHHHH
Confidence 223333444444 7999999999865443 234577889999999999999999999999865 34456788999
Q ss_pred HHHHHHhCCchHHHHHHHHHH
Q psy875 197 GDLYELQEKPFELVVSTHEKA 217 (480)
Q Consensus 197 ~~~~~~~~~~~~~A~~~~~~a 217 (480)
..+...+|++.+.+.+++.+.
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHhCCChhHHHHHHHHH
Confidence 999999999335555566553
No 296
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.99 E-value=0.004 Score=63.74 Aligned_cols=214 Identities=13% Similarity=0.088 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCCh
Q psy875 53 YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNL 132 (480)
Q Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~ 132 (480)
...|+++++-+++-..-.+...+.++..+|.+++....+++.|+.++.|++.+.++.+-......+...++.+|.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 44556666655532122344577889999999998889999999999999999887433344455666789999999888
Q ss_pred HHHHHHHHHHhccccc---ccHHHHHHHH-HHHHHhhccHHHHHHHHHHHHhhhh--cCcHHHHHHHHHHHHHHHHhCCc
Q psy875 133 DSACSELHTVLSSDLC---KDLASCYISL-AQTYKDNKQYNLAVDYFNKELRLHA--RNFPEAVKTLGEIGDLYELQEKP 206 (480)
Q Consensus 133 ~~A~~~~~~~l~~~~~---~~~~~~~~~l-a~~y~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 206 (480)
. |+..+++.+..... ..+..++.-+ ...+...+++..|++.++....... +++.....+....+.++...+.
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~- 194 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS- 194 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC-
Confidence 8 99999988865544 2223333333 3333334899999999999888865 3555555666666778888888
Q ss_pred hHHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHHHHHhhccCC
Q psy875 207 FELVVSTHEKALDLARQN----KDDKLIRTVMRSMKKL--YKKHDKFTELEQIKTELKSLEEKLDLNS 268 (480)
Q Consensus 207 ~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~l~~~~~~~~ 268 (480)
.+++++.++++...++.. ........++..+-++ +...|+++.+...+++....-+......
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~ 262 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSP 262 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCc
Confidence 899999999998777654 1133444555554444 5677888899999888888777766544
No 297
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.99 E-value=7.3e-05 Score=65.34 Aligned_cols=100 Identities=8% Similarity=0.006 Sum_probs=88.1
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy875 155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVM 234 (480)
Q Consensus 155 ~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 234 (480)
.++.|.-++..|+|.+|..-|..-++-+++ ....+.+++.||.+++.+|+ |++|...|..+.+ ..+..+...+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~-y~~Aa~~f~~~~k---~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGD-YEDAAYIFARVVK---DYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhccc-chHHHHHHHHHHH---hCCCCCCChHHH
Confidence 788899999999999999999999888766 35567899999999999999 9999999988755 556666677899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 235 RSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
..||.+...+|+.++|...++++.+
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999998765
No 298
>KOG0511|consensus
Probab=97.97 E-value=1.5e-05 Score=71.46 Aligned_cols=58 Identities=36% Similarity=0.437 Sum_probs=54.2
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875 419 WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478 (480)
Q Consensus 419 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 478 (480)
..-|..||+.|..+.|++|++.|.++| ..|....+||.+|+-.||.+++++|+++||-
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN--~vD~fD~spL~lAsLcGHe~vvklLLenGAi 94 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVN--AVDRFDSSPLYLASLCGHEDVVKLLLENGAI 94 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcc--hhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence 446889999999999999999999999 6799999999999999999999999999984
No 299
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.97 E-value=0.0055 Score=53.95 Aligned_cols=198 Identities=22% Similarity=0.229 Sum_probs=145.9
Q ss_pred cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc
Q psy875 50 NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH 129 (480)
Q Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~ 129 (480)
.+.+..+...+..+... .... .........+.. +...+.+..+...+..++.. .........+..++..+...
T Consensus 36 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 108 (291)
T COG0457 36 LGELAEALELLEEALEL-LPNS-DLAGLLLLLALA-LLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEAL 108 (291)
T ss_pred HhhHHHHHHHHHHHHhc-Cccc-cchHHHHHHHHH-HHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHH
Confidence 56777777777777666 1111 124455666777 44558899999999888864 12344567788999999999
Q ss_pred CChHHHHHHHHHHhcccccccHHHHHHHHHH-HHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchH
Q psy875 130 DNLDSACSELHTVLSSDLCKDLASCYISLAQ-TYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE 208 (480)
Q Consensus 130 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~-~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (480)
+++.+|+..+.+++...+...... ...+. ++...|++++|..++.+++..... .......+...+..+...++ ++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~ 184 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAE--ALLALGALYELGDYEEALELYEKALELDPE-LNELAEALLALGALLEALGR-YE 184 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ccchHHHHHHhhhHHHHhcC-HH
Confidence 999999999999987665553333 33334 899999999999999999664211 12455666667777888899 99
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875 209 LVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 209 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
.|+..+.+++...... ....+..++..+...+++.+|...+..+......
T Consensus 185 ~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 185 EALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 9999999998874322 5677888999999999999999999888775544
No 300
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.95 E-value=3e-05 Score=72.78 Aligned_cols=70 Identities=16% Similarity=0.051 Sum_probs=61.5
Q ss_pred ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 149 ~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
|.....++++|.+|..+|+|++|+..|++++++.+++ .....+|+++|.+|..+|+ +++|+.++++|+++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~-aeA~~A~yNLAcaya~LGr-~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP-DEAQAAYYNKACCHAYREE-GKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence 6678999999999999999999999999999994332 2223569999999999999 99999999999986
No 301
>KOG4648|consensus
Probab=97.91 E-value=0.00012 Score=65.41 Aligned_cols=97 Identities=16% Similarity=0.068 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875 119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD 198 (480)
Q Consensus 119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~ 198 (480)
....|.-|+++|+|++|+.||.+++...+. ....+.|.|..|+++++|..|..-+..|+.+ ......+|...|.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~--NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH--NPVYHINRALAYLKQKSFAQAEEDCEAAIAL----DKLYVKAYSRRMQ 173 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCC--CccchhhHHHHHHHHHHHHHHHHhHHHHHHh----hHHHHHHHHHHHH
Confidence 457899999999999999999999977753 3367889999999999999999999999998 6778899999999
Q ss_pred HHHHhCCchHHHHHHHHHHHHHHH
Q psy875 199 LYELQEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~ 222 (480)
+-+.+|+ ..+|.+-++.++++..
T Consensus 174 AR~~Lg~-~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 174 ARESLGN-NMEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHhh-HHHHHHhHHHHHhhCc
Confidence 9999999 9999999999998743
No 302
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.91 E-value=3.5e-05 Score=53.57 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=30.7
Q ss_pred HhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 127 KKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 127 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
...|+|++|+..|++++...|. ...+...+|.+|...|++++|...+++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456666666666666654433 2345556666666666666666666665555
No 303
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.90 E-value=0.0005 Score=57.75 Aligned_cols=123 Identities=13% Similarity=0.028 Sum_probs=95.2
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy875 22 TELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEK 101 (480)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~k 101 (480)
.++.-.+.......+..++..+|..|.+.|+++.|++.|.++.+. ..........+..+-.+ ....+++..+..+..+
T Consensus 21 ~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv-~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 21 AELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRV-AIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHH
Confidence 335555566667788899999999999999999999999999887 44445556666666666 3334999999999999
Q ss_pred HHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc
Q psy875 102 ALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD 146 (480)
Q Consensus 102 Al~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~ 146 (480)
|-.+....++..........-|..+...++|.+|...|-.+....
T Consensus 99 a~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 99 AESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 999888877665555555566777777889999999888776544
No 304
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.001 Score=59.09 Aligned_cols=119 Identities=16% Similarity=0.070 Sum_probs=75.5
Q ss_pred CchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhcccc
Q psy875 71 FPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD---NLDSACSELHTVLSSDL 147 (480)
Q Consensus 71 ~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~---~~~~A~~~~~~~l~~~~ 147 (480)
+|+.+..|..+|.+ +...|++..|...|.+|+++..+. ..++..+|.++..+. .-.++...+++++..++
T Consensus 152 nP~d~egW~~Lg~~-ym~~~~~~~A~~AY~~A~rL~g~n------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 152 NPGDAEGWDLLGRA-YMALGRASDALLAYRNALRLAGDN------PEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred CCCCchhHHHHHHH-HHHhcchhHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 55556667777888 444478888888888887775543 233445555544432 45677777777775553
Q ss_pred cccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875 148 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD 198 (480)
Q Consensus 148 ~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~ 198 (480)
.-..+.+.||..+++.|+|.+|...++..++....+.+....+-..++.
T Consensus 225 --~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~ 273 (287)
T COG4235 225 --ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR 273 (287)
T ss_pred --ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 3346667777778888888888888777777766555544444444433
No 305
>KOG4648|consensus
Probab=97.89 E-value=4e-05 Score=68.33 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=80.6
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy875 156 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMR 235 (480)
Q Consensus 156 ~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 235 (480)
-.-|+.|+++|.|++|+.+|.+++.. .+..+..+.+.|.+|+++++ |..|..-+..|+.+ ......+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~----~P~NpV~~~NRA~AYlk~K~-FA~AE~DC~~AiaL------d~~Y~KAYS 169 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV----YPHNPVYHINRALAYLKQKS-FAQAEEDCEAAIAL------DKLYVKAYS 169 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc----CCCCccchhhHHHHHHHHHH-HHHHHHhHHHHHHh------hHHHHHHHH
Confidence 45699999999999999999999998 44445678899999999999 99999999999988 556777888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 236 SMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 236 ~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
..+..-..+|+..+|.+-++.+++|.
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 88888888888888888777776654
No 306
>KOG2384|consensus
Probab=97.88 E-value=7.4e-05 Score=60.65 Aligned_cols=67 Identities=25% Similarity=0.340 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy875 408 GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG-ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG 476 (480)
Q Consensus 408 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g 476 (480)
+.++|.+|..||||++.|+..|..+.+.+|+.+| +.+- +.|..|.+++.+|-+.|+.+++..|.+.-
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vg--v~d~ssldaaqlaek~g~~~fvh~lfe~~ 69 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVG--VTDESSLDAAQLAEKGGAQAFVHSLFEND 69 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccccc--ccccccchHHHHHHhcChHHHHHHHHHHh
Confidence 4689999999999999999999999999999999 7887 67999999999999999999999997753
No 307
>KOG1070|consensus
Probab=97.87 E-value=0.0083 Score=63.55 Aligned_cols=208 Identities=14% Similarity=0.119 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
.++.+|.++-..| |.-+.-.+.|++|.++ -+....|..+..+| ...+.+++|.++++..++-+.+
T Consensus 1498 NiWiA~lNlEn~y---G~eesl~kVFeRAcqy-----cd~~~V~~~L~~iy-~k~ek~~~A~ell~~m~KKF~q------ 1562 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAY---GTEESLKKVFERACQY-----CDAYTVHLKLLGIY-EKSEKNDEADELLRLMLKKFGQ------ 1562 (1710)
T ss_pred HHHHHHHhHHHhh---CcHHHHHHHHHHHHHh-----cchHHHHHHHHHHH-HHhhcchhHHHHHHHHHHHhcc------
Confidence 4566677777666 4556667788888887 23345677788884 4459999999999999887652
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
...+|...|...+.+.+-+.|...+.+|+.--|..+........|.+-++.|+.+.+...|+..+.. .|.....|.
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a----yPKRtDlW~ 1638 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA----YPKRTDLWS 1638 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh----CccchhHHH
Confidence 2567888999999999999999999999988888777777888899999999999999999988877 556667888
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875 195 EIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRT-VMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~ 266 (480)
-+.+.-.+.|. .+.+...|++++.+. -.+..+. .+...-.+-...|+-...+..-.+|.+.-.++..
T Consensus 1639 VYid~eik~~~-~~~vR~lfeRvi~l~----l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~~s 1706 (1710)
T KOG1070|consen 1639 VYIDMEIKHGD-IKYVRDLFERVIELK----LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESIKS 1706 (1710)
T ss_pred HHHHHHHccCC-HHHHHHHHHHHHhcC----CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHhhh
Confidence 88888889999 899999999998762 2333333 3444444445568877777777777777666543
No 308
>KOG1464|consensus
Probab=97.83 E-value=0.0016 Score=56.43 Aligned_cols=207 Identities=13% Similarity=0.079 Sum_probs=134.9
Q ss_pred cccHHHHHHHHHHHHHHhhccCchH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh
Q psy875 50 NKQYNLAVDYFNKELRLHARNFPEA-VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK 128 (480)
Q Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~ 128 (480)
..+.++|+..|++++++ .+..... ..++-.+-.+++.. ++|++....|++.+...+..-.....-.+.+.+-..-..
T Consensus 40 e~~p~~Al~sF~kVlel-EgEKgeWGFKALKQmiKI~f~l-~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLEL-EGEKGEWGFKALKQMIKINFRL-GNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccCHHHHHHHHHHHHhc-ccccchhHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 45899999999999999 5444333 45667777885555 999999999999886554332221111222222222223
Q ss_pred cCChHHHHHHHH---HHhccccc-ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC--------cHHHHHHHHHH
Q psy875 129 HDNLDSACSELH---TVLSSDLC-KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN--------FPEAVKTLGEI 196 (480)
Q Consensus 129 ~~~~~~A~~~~~---~~l~~~~~-~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~l 196 (480)
..+.+--.++|+ .++....+ .-+...-..||.+|++.++|.+-.+.+++.-..++.+ ......+|..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 344444455555 33332222 2224455679999999999998887777655554431 12344556556
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
-.+|..+++ ..+-...|++++.+-...+.+.....+..-=|..+.+.|++++|-.-+-++..
T Consensus 198 IQmYT~qKn-NKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 198 IQMYTEQKN-NKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhhhhcc-cHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 678888888 77777889999998777777776666666667888889999888765555443
No 309
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.83 E-value=7.8e-05 Score=52.62 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=31.6
Q ss_pred HHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 159 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 159 a~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
..+|...++|++|++++++++.+ .|..+..+...|.++..+|+ +++|...++++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~g~-~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL----DPDDPELWLQRARCLFQLGR-YEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh----CcccchhhHHHHHHHHHhcc-HHHHHHHHHHHHHH
Confidence 34555555555555555555555 33344555555555555555 55555555555543
No 310
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.81 E-value=5.5e-05 Score=52.54 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=45.9
Q ss_pred HhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 163 KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 163 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
...|+|++|+.+|++++.. .|....++..+|.+|...|+ +++|...+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~-~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR----NPDNPEARLLLAQCYLKQGQ-YDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH----TTTSHHHHHHHHHHHHHTT--HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence 5789999999999999998 45557788899999999999 99999999988755
No 311
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.80 E-value=0.00055 Score=54.07 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhcc---------------HHHHHHHHHHHHhh
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQ---------------YNLAVDYFNKELRL 181 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~---------------~~~A~~~~~~al~~ 181 (480)
+...|+.+|...++|++|+..+++.+...|. +.+..+++..|.+++.+.. ..+|...|++.++.
T Consensus 49 AqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 49 AQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433 2233444444444444433 55666677666666
Q ss_pred hhc
Q psy875 182 HAR 184 (480)
Q Consensus 182 ~~~ 184 (480)
.++
T Consensus 129 yP~ 131 (142)
T PF13512_consen 129 YPN 131 (142)
T ss_pred CcC
Confidence 544
No 312
>KOG1915|consensus
Probab=97.78 E-value=0.012 Score=55.38 Aligned_cols=210 Identities=11% Similarity=0.085 Sum_probs=153.4
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccC---ch--HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNF---PE--AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~---~~--~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
+++..-.+-...|+.+.-.+.|++|+.-..+-. .. ....|.+.+..=-....+.+.+.+.|+.++++.+- ...
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH--kkF 401 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH--KKF 401 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc--ccc
Confidence 344444444456899999999999987631101 11 12233333333234558899999999999997653 245
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL 193 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 193 (480)
..+.++...|..-..+.+...|.+.+-.++-..|.+.+...|..+ -.++++++.....|++-++. .|..+.+|
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel---ElqL~efDRcRkLYEkfle~----~Pe~c~~W 474 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL---ELQLREFDRCRKLYEKFLEF----SPENCYAW 474 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH---HHHHhhHHHHHHHHHHHHhc----ChHhhHHH
Confidence 667788888899999999999999999999888877665555443 45678999999999999988 78889999
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875 194 GEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE 262 (480)
Q Consensus 194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~ 262 (480)
...|.+-..+|+ .+.|...|+-|+.... ...+.. .+....++-...|.+++|...|++++....
T Consensus 475 ~kyaElE~~Lgd-tdRaRaifelAi~qp~-ldmpel---lwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 475 SKYAELETSLGD-TDRARAIFELAISQPA-LDMPEL---LWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHHHhhh-HHHHHHHHHHHhcCcc-cccHHH---HHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 999999999999 9999999998876421 112222 233344566788999999999999887543
No 313
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.78 E-value=0.00012 Score=51.65 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=52.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 122 IKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 122 l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
|..+|...++|++|++++++++...|. ....+...|.+|..+|++++|+..++++++..++
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPD--DPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 357899999999999999999977654 4577888999999999999999999999988543
No 314
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00062 Score=60.44 Aligned_cols=101 Identities=15% Similarity=0.071 Sum_probs=81.0
Q ss_pred ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHcCC
Q psy875 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE--KPFELVVSTHEKALDLARQNKD 226 (480)
Q Consensus 149 ~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~ 226 (480)
|+-+.-+..||.+|..+|++..|...|.+|+++.. ..+..+..+|.+++.+. +...++...+++++..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g----~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~------ 222 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG----DNPEILLGLAEALYYQAGQQMTAKARALLRQALAL------ 222 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc------
Confidence 45557788899999999999999999999999943 44566777787776654 3357888899998877
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 227 DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
++....+...|+..+..+|+|.+|....+....
T Consensus 223 D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 223 DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 666778888999999999999999999887755
No 315
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.75 E-value=0.0034 Score=61.76 Aligned_cols=168 Identities=11% Similarity=-0.041 Sum_probs=120.2
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCc--hHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Q psy875 90 KSFEIVQSTHEKALDLARQNKDD--KLIRTVMRSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYK 163 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~--~~~~~~~~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~ 163 (480)
||-+.++..+.++.+ ......+ ......|+.....+.. ....+.|.+.+.......|+ -+..+...|+++.
T Consensus 202 gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~--s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 202 GDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN--SALFLFFEGRLER 278 (468)
T ss_pred CcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHH
Confidence 888999998888765 2211111 1111223333322332 34667788888887766654 3456778899999
Q ss_pred hhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy875 164 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK 243 (480)
Q Consensus 164 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (480)
..|+.++|++.|++++.....-+.....++..+|.++.-+.+ |++|..++.+..+. +........+..|-++..
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~-w~~A~~~f~~L~~~-----s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD-WEEAAEYFLRLLKE-----SKWSKAFYAYLAAACLLM 352 (468)
T ss_pred HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch-HHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHh
Confidence 999999999999999865444455567788999999999999 99999999887654 344566666788999999
Q ss_pred cCCh-------HHHHHHHHHHHHHHHhhcc
Q psy875 244 HDKF-------TELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 244 ~g~~-------~~A~~~~~~~~~l~~~~~~ 266 (480)
.|+. ++|..+++++-.+...+..
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g 382 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPKLKQKKAG 382 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 9999 7777777777776665544
No 316
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.74 E-value=0.019 Score=58.85 Aligned_cols=221 Identities=12% Similarity=0.033 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCc------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-----
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP------EAVKTLGEIGDLYELQEKSFEIVQSTHEKALD----- 104 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~----- 104 (480)
...+.+.++......+++.+|........+.. ...+ -....++..|..+... |+.+.|+.+|.+..-
T Consensus 360 ~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~yL~gl~~q~~-g~l~~A~~~y~~~~~~~~~~ 437 (608)
T PF10345_consen 360 QCYLLFYQIWCNFIRGDWSKATQELEFMRQLC-QRSPSKLYESLYPLLHYLLGLYYQST-GDLEAALYQYQKPRFLLCEA 437 (608)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH-hcCccchhhhhhHHHHHHHHHHHHHc-CCHHHHHHHHhhhHHhhhhh
Confidence 34567778888889999999999999888873 2111 2345566667775555 999999999985551
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHhcCChHH----HHHHHHHHh---cccccccHHHHHHHH--HHHHHhhccHHHHHHHH
Q psy875 105 LARQNKDDKLIRTVMRSIKKLYKKHDNLDS----ACSELHTVL---SSDLCKDLASCYISL--AQTYKDNKQYNLAVDYF 175 (480)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~----A~~~~~~~l---~~~~~~~~~~~~~~l--a~~y~~~~~~~~A~~~~ 175 (480)
..+..........+..|+..++...+.-.. +-..+...- ...+.......+..+ +.-....-.+.++..++
T Consensus 438 ~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l 517 (608)
T PF10345_consen 438 ANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHL 517 (608)
T ss_pred hccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHH
Confidence 222233334445566788888887765333 444444222 222222222222222 22222334556899999
Q ss_pred HHHHhhh-hc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHH---HHHHHHHHHHHcCChHH
Q psy875 176 NKELRLH-AR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRT---VMRSMKKLYKKHDKFTE 249 (480)
Q Consensus 176 ~~al~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~ 249 (480)
.++++.. .. +....+.++..++..++ .|. ..+.......+...+++..+...... +-..+.+.+...|+.++
T Consensus 518 ~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~-~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~k 595 (608)
T PF10345_consen 518 QEALKMANNKLGNSQLLAILLNLMGHRLF-EGD-VGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDK 595 (608)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHH
Confidence 9999887 33 45556667788888888 788 88888888889999888844443333 55678888999999999
Q ss_pred HHHHHHHHHHH
Q psy875 250 LEQIKTELKSL 260 (480)
Q Consensus 250 A~~~~~~~~~l 260 (480)
|.....++..+
T Consensus 596 a~~~~~~~~~~ 606 (608)
T PF10345_consen 596 AEEARQQLDRV 606 (608)
T ss_pred HHHHHHHHHHh
Confidence 99998887654
No 317
>PRK11906 transcriptional regulator; Provisional
Probab=97.72 E-value=0.0018 Score=61.25 Aligned_cols=150 Identities=10% Similarity=-0.025 Sum_probs=108.1
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc---------CChHHHHHHHHHHhcccccccHHHHHHHHHH
Q psy875 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH---------DNLDSACSELHTVLSSDLCKDLASCYISLAQ 160 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~---------~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~ 160 (480)
...+.|+..|.+|+.... -++..+.+|..++.++... ..-.+|...-+++++..+. -+.++..+|.
T Consensus 272 ~~~~~Al~lf~ra~~~~~---ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~--Da~a~~~~g~ 346 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSD---IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV--DGKILAIMGL 346 (458)
T ss_pred HHHHHHHHHHHHHhhccc---CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Confidence 556788888988883322 1344566777777776654 1345677777788877644 4578889999
Q ss_pred HHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy875 161 TYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKL 240 (480)
Q Consensus 161 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 240 (480)
+....++++.|...|++|+.+ .|..+.+++..|.+..-.|+ .++|.+.+++|+++.. ......+.....+.
T Consensus 347 ~~~~~~~~~~a~~~f~rA~~L----~Pn~A~~~~~~~~~~~~~G~-~~~a~~~i~~alrLsP----~~~~~~~~~~~~~~ 417 (458)
T PRK11906 347 ITGLSGQAKVSHILFEQAKIH----STDIASLYYYRALVHFHNEK-IEEARICIDKSLQLEP----RRRKAVVIKECVDM 417 (458)
T ss_pred HHHhhcchhhHHHHHHHHhhc----CCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCc----hhhHHHHHHHHHHH
Confidence 999999999999999999999 67788999999999999999 9999999999998721 11222233333334
Q ss_pred HHHcCChHHHHHHH
Q psy875 241 YKKHDKFTELEQIK 254 (480)
Q Consensus 241 ~~~~g~~~~A~~~~ 254 (480)
|.. ...++|..+|
T Consensus 418 ~~~-~~~~~~~~~~ 430 (458)
T PRK11906 418 YVP-NPLKNNIKLY 430 (458)
T ss_pred HcC-CchhhhHHHH
Confidence 444 4455666555
No 318
>KOG4642|consensus
Probab=97.72 E-value=0.00044 Score=58.78 Aligned_cols=126 Identities=15% Similarity=0.144 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875 119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD 198 (480)
Q Consensus 119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~ 198 (480)
+..-|.-+..-.+|..|+.+|.+++.+.| ..+..|.+-+.+|+++++++.+..-..+++++ .+..+..++.+|.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP--~~~~Y~tnralchlk~~~~~~v~~dcrralql----~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINP--TVASYYTNRALCHLKLKHWEPVEEDCRRALQL----DPNLVKAHYFLGQ 86 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCC--CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc----ChHHHHHHHHHHH
Confidence 34556677777899999999999997764 45577889999999999999999999999999 7888999999999
Q ss_pred HHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q psy875 199 LYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQ 252 (480)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 252 (480)
....... |++|+..+.+|..+.+...... ...+-..|..+-.+.=+..++.+
T Consensus 87 ~~l~s~~-~~eaI~~Lqra~sl~r~~~~~~-~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 87 WLLQSKG-YDEAIKVLQRAYSLLREQPFTF-GDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred HHHhhcc-ccHHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhCccchhHHHH
Confidence 9999999 9999999999999888765442 22333344444444334444444
No 319
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.71 E-value=0.0016 Score=54.77 Aligned_cols=124 Identities=14% Similarity=0.092 Sum_probs=96.4
Q ss_pred HHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhccHHHHHHH
Q psy875 96 QSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQYNLAVDY 174 (480)
Q Consensus 96 ~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~~~~A~~~ 174 (480)
++-++.-++-++.......+..++..+|..|.+.|++++|++.|.++...... ......+.++-.+....+++.....+
T Consensus 16 ~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~ 95 (177)
T PF10602_consen 16 LEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKY 95 (177)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44455555555666667788899999999999999999999999998866544 34477888999999999999999999
Q ss_pred HHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 175 FNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 175 ~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
+.++-.+... +..........-|..+...++ |.+|...|-.+..-
T Consensus 96 i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~-f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 96 IEKAESLIEKGGDWERRNRLKVYEGLANLAQRD-FKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhch-HHHHHHHHHccCcC
Confidence 9999888665 222333444556667777888 99999999887644
No 320
>KOG0520|consensus
Probab=97.71 E-value=2.7e-05 Score=79.27 Aligned_cols=95 Identities=25% Similarity=0.300 Sum_probs=78.0
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCCcHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQ-GHPVKVQDSAGWLPLHEAANHGHTDIVQALVS-AGADPNDKVQDSAGWLPLHE 459 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~g~tpl~~ 459 (480)
...|.+.+|+++..+...++..+++- |-.....|..|...+|+ |..++.++.-+++. .|..++ ++|..|+||||+
T Consensus 571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~--i~D~~G~tpL~w 647 (975)
T KOG0520|consen 571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAID--IRDRNGWTPLHW 647 (975)
T ss_pred CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccc--cccCCCCcccch
Confidence 34589999999999999999999986 65566677778888888 55566666555553 577777 679999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCC
Q psy875 460 AANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 460 A~~~~~~~~~~~Ll~~ga~~ 479 (480)
|+..|+..++..|++.|++.
T Consensus 648 Aa~~G~e~l~a~l~~lga~~ 667 (975)
T KOG0520|consen 648 AAFRGREKLVASLIELGADP 667 (975)
T ss_pred HhhcCHHHHHHHHHHhcccc
Confidence 99999999999999988864
No 321
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.71 E-value=0.0099 Score=48.80 Aligned_cols=133 Identities=10% Similarity=0.052 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHH
Q psy875 78 LGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYIS 157 (480)
Q Consensus 78 ~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 157 (480)
...+|.. ...+|++.+|..+|++++.-.- .++ ...+..++......+++..|...+++..+..+..........
T Consensus 92 r~rLa~a-l~elGr~~EA~~hy~qalsG~f-A~d----~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 92 RYRLANA-LAELGRYHEAVPHYQQALSGIF-AHD----AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred HHHHHHH-HHHhhhhhhhHHHHHHHhcccc-CCC----HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3567888 7777999999999999985321 112 334567889999999999999999988877766555566778
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875 158 LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 158 la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~ 222 (480)
+|.+|..+|++.+|...|+.++...++ +..-...+..+.++|+ ..+|...+....+-..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg-----~~ar~~Y~e~La~qgr-~~ea~aq~~~v~d~~~ 224 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPG-----PQARIYYAEMLAKQGR-LREANAQYVAVVDTAK 224 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCC-----HHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHH
Confidence 999999999999999999999988554 2234446788889998 8888887776665443
No 322
>KOG1464|consensus
Probab=97.71 E-value=0.0027 Score=55.17 Aligned_cols=188 Identities=15% Similarity=0.168 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
..++-.+-.++++.++|++-++.|.+.+.+. ..+.... +.+.+-.. -....+.+--..+|+..+...+...+.
T Consensus 65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlDy-iStS~~m~LLQ~FYeTTL~ALkdAKNe 141 (440)
T KOG1464|consen 65 FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILDY-ISTSKNMDLLQEFYETTLDALKDAKNE 141 (440)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 4567778889999999999999999998875 2222211 12222111 122244555556777777666666666
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHH---hccccc-------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTV---LSSDLC-------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH 182 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~---l~~~~~-------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~ 182 (480)
+.+...-..+|.+|+..+.|.+-.+.+++. .+.... ..+..+|..--..|..+++-.+-...|++++.+.
T Consensus 142 RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 142 RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 666666678999999999888877776643 322211 3445667666788999999888888999999885
Q ss_pred hc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH
Q psy875 183 AR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK 228 (480)
Q Consensus 183 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 228 (480)
.. .+.....+.-.=|..+.+.|+ +++|-.-|-+|.+-..+.+++.
T Consensus 222 SAIPHPlImGvIRECGGKMHlreg~-fe~AhTDFFEAFKNYDEsGspR 268 (440)
T KOG1464|consen 222 SAIPHPLIMGVIRECGGKMHLREGE-FEKAHTDFFEAFKNYDESGSPR 268 (440)
T ss_pred ccCCchHHHhHHHHcCCccccccch-HHHHHhHHHHHHhcccccCCcc
Confidence 44 333444555566888999999 9999988888877666655544
No 323
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.69 E-value=0.0016 Score=51.45 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH-HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL-ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
...++.-|.-.+..|+|++|++.|+......|.... ..+...||.+|++.++|++|+..+++-+++.+. ++....+++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~-hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT-HPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CCCccHHHH
Confidence 345678889999999999999999988877766444 578899999999999999999999999999665 456778888
Q ss_pred HHHHHHHHhC
Q psy875 195 EIGDLYELQE 204 (480)
Q Consensus 195 ~l~~~~~~~~ 204 (480)
..|.+++.+.
T Consensus 89 ~~gL~~~~~~ 98 (142)
T PF13512_consen 89 MRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHh
Confidence 8888887764
No 324
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.63 E-value=0.0062 Score=45.80 Aligned_cols=117 Identities=10% Similarity=0.054 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHHH--HhhccHHHHHHHHHHHHhhhhcCc--------HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875 150 DLASCYISLAQTY--KDNKQYNLAVDYFNKELRLHARNF--------PEAVKTLGEIGDLYELQEKPFELVVSTHEKALD 219 (480)
Q Consensus 150 ~~~~~~~~la~~y--~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~ 219 (480)
.++.+|..|+..- +.-|-|++|..-+.+++++...-+ -.-+.++..|+.++..+|+ |++++....+++.
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr-y~e~L~sA~~aL~ 83 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR-YDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHH
Confidence 4456677665444 455889999999999998865522 2346778889999999999 9999999999999
Q ss_pred HHHHcCC-----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccC
Q psy875 220 LARQNKD-----DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLN 267 (480)
Q Consensus 220 ~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~~ 267 (480)
.+.+.+. -...+.+....+..+...|+.++|+..++.+-+.-..-..+
T Consensus 84 YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 84 YFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred HHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 8876542 23456667788999999999999999999998876655443
No 325
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.63 E-value=0.00097 Score=49.58 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=67.0
Q ss_pred HHhhccHHHHHHHHHHHHhhhhcC--cH---HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q psy875 162 YKDNKQYNLAVDYFNKELRLHARN--FP---EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRS 236 (480)
Q Consensus 162 y~~~~~~~~A~~~~~~al~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 236 (480)
....|+|.+|++.+.+..+..... .. ....+..++|.++...|+ +++|+..+++|++++++.++......++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~-~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGH-YEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 356789999999999988875552 22 456778899999999999 999999999999999999999999888888
Q ss_pred HHHHHH
Q psy875 237 MKKLYK 242 (480)
Q Consensus 237 l~~~~~ 242 (480)
+..+..
T Consensus 87 ~~~l~~ 92 (94)
T PF12862_consen 87 LANLLK 92 (94)
T ss_pred HHHHhh
Confidence 776654
No 326
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.59 E-value=0.005 Score=46.27 Aligned_cols=109 Identities=13% Similarity=0.086 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHhhhcCCCc------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc-
Q psy875 74 AVKTLGEIGDLY-ELQEKSFEIVQSTHEKALDLARQNKDD------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS- 145 (480)
Q Consensus 74 ~~~~~~~lg~~y-~~~~~~~~~A~~~~~kAl~~~~~~~~~------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~- 145 (480)
.+.+|..++..- ..+.|.|++|-..+++|+++.+..+.. ---+.++..|+..+..+|+|++++..-.++|..
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 344555553330 334488999999999999998877643 223567778888888888888777655555421
Q ss_pred ------c--ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875 146 ------D--LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH 182 (480)
Q Consensus 146 ------~--~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~ 182 (480)
. ....+..+-++.|..+..+|+.++|+..|+.+-++.
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 1 113344555666777777777777777777776653
No 327
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.57 E-value=0.003 Score=59.85 Aligned_cols=126 Identities=10% Similarity=0.068 Sum_probs=97.9
Q ss_pred HHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc-------------
Q psy875 46 TYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD------------- 112 (480)
Q Consensus 46 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~------------- 112 (480)
-.++..+.++-++.-.+|+++ .++-+.+|..+|.- .. ....+|+.+|++|++..+..-..
T Consensus 177 ~AWRERnp~aRIkaA~eALei----~pdCAdAYILLAEE-eA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEI----NPDCADAYILLAEE-EA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHh----hhhhhHHHhhcccc-cc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 345778999999999999999 77777887777653 12 34678888888888654322110
Q ss_pred ------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy875 113 ------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKE 178 (480)
Q Consensus 113 ------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~a 178 (480)
.-...+-..+|.+..++|+.++|++.++..++..+..+...++.+|..++..++.|.++...+.+-
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 112345568999999999999999999999877776666789999999999999999999888774
No 328
>KOG0521|consensus
Probab=97.54 E-value=8.8e-05 Score=76.02 Aligned_cols=90 Identities=31% Similarity=0.295 Sum_probs=79.5
Q ss_pred CcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC
Q psy875 332 NLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPV 411 (480)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~ 411 (480)
....+.+++|.|+..|..-++++|++.|+++|..+. .|.+|+|.+...|+...+..+++.|++.
T Consensus 652 ~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~----------------~g~~plh~~~~~g~~~~~~~ll~~~a~~ 715 (785)
T KOG0521|consen 652 VLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDS----------------KGRTPLHHATASGHTSIACLLLKRGADP 715 (785)
T ss_pred hhhcccchhhhhhccchHHHHHHHHhcCCcchhhhc----------------cCCCcchhhhhhcccchhhhhccccccc
Confidence 345567999999999999999999999999998765 3999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHH
Q psy875 412 KVQDSAGWLPLHEAANHGHTDIVQAL 437 (480)
Q Consensus 412 ~~~~~~g~t~l~~a~~~~~~~~~~~L 437 (480)
+..+..|.+|+++|....+.+.+-++
T Consensus 716 ~a~~~~~~~~l~~a~~~~~~d~~~l~ 741 (785)
T KOG0521|consen 716 NAFDPDGKLPLDIAMEAANADIVLLL 741 (785)
T ss_pred cccCccCcchhhHHhhhccccHHHHH
Confidence 99999999999999877766655443
No 329
>KOG0551|consensus
Probab=97.52 E-value=0.0039 Score=55.86 Aligned_cols=109 Identities=18% Similarity=0.139 Sum_probs=93.3
Q ss_pred cCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc-ccccH-HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC
Q psy875 108 QNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD-LCKDL-ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN 185 (480)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~-~~~~~-~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~ 185 (480)
.-+++..++.-|..-|+-|++.++|..|..+|.+.+... .++.+ +..|.|.|.+....|+|..|+.-..+++.+
T Consensus 73 ~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~---- 148 (390)
T KOG0551|consen 73 EEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL---- 148 (390)
T ss_pred ccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 344566678888999999999999999999999988654 33444 788999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875 186 FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 186 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~ 221 (480)
.|....++..=|.+++.+.+ +++|..++++.+.+.
T Consensus 149 ~P~h~Ka~~R~Akc~~eLe~-~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 KPTHLKAYIRGAKCLLELER-FAEAVNWCEEGLQID 183 (390)
T ss_pred CcchhhhhhhhhHHHHHHHH-HHHHHHHHhhhhhhh
Confidence 67778899999999999999 999999999887653
No 330
>KOG1839|consensus
Probab=97.51 E-value=0.0027 Score=66.92 Aligned_cols=184 Identities=15% Similarity=0.139 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc--CC
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ--NK 110 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~--~~ 110 (480)
+.-....|......|.+.+|.+ .-+++.++ ....+..+.+|..++.+|+.. +++++|+.+-.+|.-+... ..
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~-~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRL-GDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh-cchHHHHHhcccceeeechhccC
Confidence 3344556667777888888888 67777664 334677889999999995554 9999999999999866544 33
Q ss_pred CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc------ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD------LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
+.+.....|.+++......++...|+..+.+++... ..|..+.+..+++.++...++++.|+.+.+.|+.....
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 667888899999999999999999999888665432 23677888899999999999999999999999987544
Q ss_pred ----CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875 185 ----NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ 223 (480)
Q Consensus 185 ----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 223 (480)
.....+.++..++..+...+. +..|....+....+.+.
T Consensus 1090 v~g~~~l~~~~~~~~~a~l~~s~~d-fr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKD-FRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred hcCccchhhhhHHHHHHHHHhhhHH-HHHHHHHHhhHHHHHHH
Confidence 345667888899999999999 99999999998887765
No 331
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.50 E-value=0.027 Score=57.32 Aligned_cols=221 Identities=10% Similarity=0.002 Sum_probs=140.6
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHh-hcc-C---chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 40 YISLAQTYKDNKQYNLAVDYFNKELRLH-ARN-F---PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~-~---~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
...-++......++.+|-.+..++.... ... . ...+...-.-|.+ ....|++++|+.+.+.++........ ..
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~v-al~~~~~e~a~~lar~al~~L~~~~~-~~ 495 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQV-ALNRGDPEEAEDLARLALVQLPEAAY-RS 495 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhcccccc-hh
Confidence 3445667777899999999999887774 111 1 1122222233666 44559999999999999977654433 33
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc----HHHHHHHHHHHHHhhccH--HHHHHHHHHHHhhhhcCcHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD----LASCYISLAQTYKDNKQY--NLAVDYFNKELRLHARNFPE 188 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~~~la~~y~~~~~~--~~A~~~~~~al~~~~~~~~~ 188 (480)
-..++..+|.+..-.|++++|..+.+.+.+.....+ ...+....+.+...+|+- .+.+.-+...-...-...+.
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 356788999999999999999999998876644322 245556668899999933 33333333222111111122
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875 189 AVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK-LIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
........+.++...-+ ++.+..-..+.+++.......+ ...-++..|+.++...|++++|.....+...+..+
T Consensus 576 ~~f~~~~r~~ll~~~~r-~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 576 HEFLVRIRAQLLRAWLR-LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred chhHHHHHHHHHHHHHH-HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 11222223333333334 6777777777777655444333 33344469999999999999999999988776544
No 332
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.50 E-value=0.021 Score=56.20 Aligned_cols=164 Identities=13% Similarity=0.049 Sum_probs=116.2
Q ss_pred hccccHHHHHHHHHHHHHHhhccCchHH----HHHHHHHHHHHH----hhccHHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875 48 KDNKQYNLAVDYFNKELRLHARNFPEAV----KTLGEIGDLYEL----QEKSFEIVQSTHEKALDLARQNKDDKLIRTVM 119 (480)
Q Consensus 48 ~~~~~~~~A~~~~~~al~~~~~~~~~~~----~~~~~lg~~y~~----~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~ 119 (480)
--.|+-+.+++.+.++.+. .+-....+ ..|+.+ ...+. ...+.+.|.+.+......+++. ...+
T Consensus 199 GF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~-~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s------~lfl 270 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLV-VPSFLGIDGEDVPLEEAEELLEEMLKRYPNS------ALFL 270 (468)
T ss_pred CcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHH-HHHHcCCcccCCCHHHHHHHHHHHHHhCCCc------HHHH
Confidence 3468999999999988764 22121121 122222 11111 1345677777777777665532 4557
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhccccc-ccH-HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875 120 RSIKKLYKKHDNLDSACSELHTVLSSDLC-KDL-ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG 197 (480)
Q Consensus 120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~-~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~ 197 (480)
...|.++...|+.++|++.|++++..... +++ ..++..+|.++.-+.+|++|.+++.+..+. +....+...+..|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~---s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE---SKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc---cccHHHHHHHHHH
Confidence 78999999999999999999988853332 222 567899999999999999999999988775 3455667777889
Q ss_pred HHHHHhCCch-------HHHHHHHHHHHHHHHH
Q psy875 198 DLYELQEKPF-------ELVVSTHEKALDLARQ 223 (480)
Q Consensus 198 ~~~~~~~~~~-------~~A~~~~~~al~~~~~ 223 (480)
.++...++ . ++|.+++.++-.+..+
T Consensus 348 ~c~~~l~~-~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 348 ACLLMLGR-EEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHhhcc-chhhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999 8 7788888877766554
No 333
>KOG1915|consensus
Probab=97.48 E-value=0.051 Score=51.33 Aligned_cols=129 Identities=8% Similarity=-0.014 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 195 (480)
..++...|.+-..+|+.+.|...|.-++......--...+-..-..-...|.+++|...|++.++..+........+.+.
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe 550 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFE 550 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHh
Confidence 44555566666666666666666665553322111011111112222344666666666666666533322222222222
Q ss_pred HHHHHHHhC-----------CchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Q psy875 196 IGDLYELQE-----------KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD 245 (480)
Q Consensus 196 l~~~~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (480)
.+......+ . ...|...|++|....+..+........+...-.+-...|
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~-~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G 610 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDEN-IKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFG 610 (677)
T ss_pred ccccccccccchhhhhcchhH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC
Confidence 222222333 3 456666666666666655554444444433333333344
No 334
>KOG2471|consensus
Probab=97.44 E-value=0.00066 Score=63.64 Aligned_cols=124 Identities=8% Similarity=-0.033 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC-ch--HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc-----
Q psy875 75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD-DK--LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD----- 146 (480)
Q Consensus 75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~-~~--~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~----- 146 (480)
......-++.+|.. |+|.+|.+.+...-......+. .+ .....++|||-+++.+|.|.-+..+|.+++...
T Consensus 240 ~~~l~LKsq~eY~~-gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 240 SMALLLKSQLEYAH-GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred cHHHHHHHHHHHHh-cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 34445568887777 9999998777554322111111 11 234456899999999999999999999998411
Q ss_pred ----cc-------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh
Q psy875 147 ----LC-------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ 203 (480)
Q Consensus 147 ----~~-------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~ 203 (480)
+. .....+.+|.|..|...|++-.|.++|.+++..+..+ +..|..+|.++...
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n----PrlWLRlAEcCima 382 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN----PRLWLRLAECCIMA 382 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHH
Confidence 11 1225678999999999999999999999999986555 46788888887654
No 335
>KOG3081|consensus
Probab=97.42 E-value=0.026 Score=49.28 Aligned_cols=144 Identities=18% Similarity=0.114 Sum_probs=97.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc---HHHHHHHH
Q psy875 82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD---LASCYISL 158 (480)
Q Consensus 82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~~l 158 (480)
|.+ +...+++++|++...+...+ .+...--.++.++.+++-|....++..++..+.. ++.+|..+
T Consensus 115 a~i-~~~~~~~deAl~~~~~~~~l-----------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~l 182 (299)
T KOG3081|consen 115 AII-YMHDGDFDEALKALHLGENL-----------EAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKL 182 (299)
T ss_pred hHH-hhcCCChHHHHHHHhccchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 555 66669999998777653222 1222334677888889999999998887776522 34444444
Q ss_pred HHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy875 159 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMK 238 (480)
Q Consensus 159 a~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 238 (480)
+. .-+++.+|..+|++--+- .+..+..+...+.++..+++ |++|...++.|+.- .....+++.++.
T Consensus 183 a~---ggek~qdAfyifeE~s~k----~~~T~~llnG~Av~~l~~~~-~eeAe~lL~eaL~k------d~~dpetL~Nli 248 (299)
T KOG3081|consen 183 AT---GGEKIQDAFYIFEELSEK----TPPTPLLLNGQAVCHLQLGR-YEEAESLLEEALDK------DAKDPETLANLI 248 (299)
T ss_pred hc---cchhhhhHHHHHHHHhcc----cCCChHHHccHHHHHHHhcC-HHHHHHHHHHHHhc------cCCCHHHHHHHH
Confidence 32 235688888888775442 22335677888999999999 99999999998864 222356677777
Q ss_pred HHHHHcCChHHHH
Q psy875 239 KLYKKHDKFTELE 251 (480)
Q Consensus 239 ~~~~~~g~~~~A~ 251 (480)
.+-..+|...++.
T Consensus 249 v~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 249 VLALHLGKDAEVT 261 (299)
T ss_pred HHHHHhCCChHHH
Confidence 7778888876654
No 336
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.40 E-value=0.0093 Score=48.95 Aligned_cols=151 Identities=13% Similarity=0.071 Sum_probs=109.0
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH
Q psy875 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN 169 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~ 169 (480)
=+.+....-..+.+.+++.. .-...||.....+|++.+|...|++++...-..+ ...+..+++..+..+++.
T Consensus 70 ldP~R~~Rea~~~~~~ApTv-------qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d-~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 70 LDPERHLREATEELAIAPTV-------QNRYRLANALAELGRYHEAVPHYQQALSGIFAHD-AAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred cChhHHHHHHHHHHhhchhH-------HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC-HHHHHHHHHHHHhhccHH
Confidence 34555544445555544322 1234788999999999999999999986543332 356778999999999999
Q ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH
Q psy875 170 LAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE 249 (480)
Q Consensus 170 ~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (480)
.|...+++..+.... ...+.....+|.++..+|+ +.+|...|+.++... +.....+ ..+....++|+..+
T Consensus 142 ~a~~tLe~l~e~~pa--~r~pd~~Ll~aR~laa~g~-~a~Aesafe~a~~~y-----pg~~ar~--~Y~e~La~qgr~~e 211 (251)
T COG4700 142 AAQQTLEDLMEYNPA--FRSPDGHLLFARTLAAQGK-YADAESAFEVAISYY-----PGPQARI--YYAEMLAKQGRLRE 211 (251)
T ss_pred HHHHHHHHHhhcCCc--cCCCCchHHHHHHHHhcCC-chhHHHHHHHHHHhC-----CCHHHHH--HHHHHHHHhcchhH
Confidence 999999998887432 1223456778999999999 999999999998763 2222333 44677889999988
Q ss_pred HHHHHHHHH
Q psy875 250 LEQIKTELK 258 (480)
Q Consensus 250 A~~~~~~~~ 258 (480)
|...+....
T Consensus 212 a~aq~~~v~ 220 (251)
T COG4700 212 ANAQYVAVV 220 (251)
T ss_pred HHHHHHHHH
Confidence 877665543
No 337
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.38 E-value=0.00041 Score=40.34 Aligned_cols=29 Identities=28% Similarity=0.623 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 153 SCYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
.+++++|.+|..+|++++|+.+|++++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45666666666666666666666666665
No 338
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.37 E-value=0.0043 Score=53.76 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=69.7
Q ss_pred HHhccccHHHHHHHHHHHHHHh---hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC-------CCchHH
Q psy875 46 TYKDNKQYNLAVDYFNKELRLH---ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN-------KDDKLI 115 (480)
Q Consensus 46 ~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~-------~~~~~~ 115 (480)
-+.....+++|++.|.-|+-.. .......+..+..+|.+| ...++.+....++++|+..+.+. ......
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWly-R~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLY-RDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence 3444668999999999988775 334446788899999995 44488777777777777554321 112333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcccc
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDL 147 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~ 147 (480)
..+.+.+|.++++.|++++|..+|.+.+....
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 45667788888888888888888887775443
No 339
>KOG3081|consensus
Probab=97.36 E-value=0.016 Score=50.47 Aligned_cols=153 Identities=13% Similarity=0.127 Sum_probs=104.8
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875 40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVM 119 (480)
Q Consensus 40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~ 119 (480)
...-|.+|...+++++|++...+...+ .+.+++ -.+ +..+..++-|.+..++..++.. + .++
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~l-------E~~Al~--VqI-~lk~~r~d~A~~~lk~mq~ide----d----~tL 172 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENL-------EAAALN--VQI-LLKMHRFDLAEKELKKMQQIDE----D----ATL 172 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchH-------HHHHHH--HHH-HHHHHHHHHHHHHHHHHHccch----H----HHH
Confidence 445677888899999999998875444 222222 233 4444778888888877776643 1 123
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875 120 RSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195 (480)
Q Consensus 120 ~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 195 (480)
..||..+.. .+++..|..+|++.-... +......+..+.+...+++|++|...++.++.-. +..+.++.|
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd----~~dpetL~N 246 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD----AKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc----CCCHHHHHH
Confidence 344444443 347999999999765433 2334677889999999999999999999999873 334677888
Q ss_pred HHHHHHHhCCchHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKA 217 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~a 217 (480)
+-.+-...|+ ..++..-+..-
T Consensus 247 liv~a~~~Gk-d~~~~~r~l~Q 267 (299)
T KOG3081|consen 247 LIVLALHLGK-DAEVTERNLSQ 267 (299)
T ss_pred HHHHHHHhCC-ChHHHHHHHHH
Confidence 8888888999 56655544333
No 340
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.35 E-value=0.0048 Score=53.51 Aligned_cols=95 Identities=14% Similarity=0.129 Sum_probs=70.0
Q ss_pred ccHHHHHHHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHhcCChHH-------HHHHHHHHhccccc----ccHHHHHHH
Q psy875 90 KSFEIVQSTHEKALDLARQNK-DDKLIRTVMRSIKKLYKKHDNLDS-------ACSELHTVLSSDLC----KDLASCYIS 157 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~-~~~~~~~~~~~l~~~y~~~~~~~~-------A~~~~~~~l~~~~~----~~~~~~~~~ 157 (480)
..+++|+..|.-|+-.+...+ ++...+.++..+|++|..+|+-+. |++.|.+++..... .+...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 678999999999996665443 455778999999999999998554 44444455433322 123567778
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 158 LAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 158 la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
+|.++.+.|++++|..+|.+.+.....
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 899999999999999999988876443
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.039 Score=45.89 Aligned_cols=99 Identities=20% Similarity=0.146 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH-HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL-ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 195 (480)
.+-..++..+...+++++|+..++.++....+..+ ..+-.+||.+...+|++++|+..+.... ++...+.....
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-----~~~w~~~~~el 164 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-----EESWAAIVAEL 164 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-----cccHHHHHHHH
Confidence 34557888899999999999999988866555444 5677889999999999999988775432 23344555667
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~al~~~ 221 (480)
.|+++...|+ -++|...|++|+...
T Consensus 165 rGDill~kg~-k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 165 RGDILLAKGD-KQEARAAYEKALESD 189 (207)
T ss_pred hhhHHHHcCc-hHHHHHHHHHHHHcc
Confidence 8999999999 999999999998763
No 342
>KOG0551|consensus
Probab=97.34 E-value=0.0024 Score=57.13 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=93.0
Q ss_pred ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH
Q psy875 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK 228 (480)
Q Consensus 149 ~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 228 (480)
...+.-|-.-|+-|++-++|..|+..|.+++.....++...+..|.|.|.+.+..|+ |..|+.-+.+|+.+ .+
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N-yRs~l~Dcs~al~~------~P 150 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN-YRSALNDCSAALKL------KP 150 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHhc------Cc
Confidence 345677778899999999999999999999998777888889999999999999999 99999999999887 67
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 229 LIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
....++..-+.++..+..+.+|..+.++...+
T Consensus 151 ~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 151 THLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 77888888899999999999999998876443
No 343
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.32 E-value=0.0004 Score=40.98 Aligned_cols=27 Identities=26% Similarity=0.653 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 155 YISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 155 ~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
+.+||.+|..+|+|++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666666666666666665544
No 344
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.29 E-value=0.00047 Score=40.10 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccccc
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC 148 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~ 148 (480)
+.++.++|.+|..+|++++|+.+|+++++..|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 357899999999999999999999999987753
No 345
>KOG2796|consensus
Probab=97.28 E-value=0.044 Score=47.72 Aligned_cols=134 Identities=9% Similarity=0.091 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHH
Q psy875 77 TLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLA 152 (480)
Q Consensus 77 ~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~ 152 (480)
..+.+..+ ..-.|.|.-....+.+.++... +.. ......+|.+..+.|+.+-|..|++..-+.... ....
T Consensus 179 Vmy~~~~~-llG~kEy~iS~d~~~~vi~~~~--e~~---p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~ 252 (366)
T KOG2796|consen 179 VMYSMANC-LLGMKEYVLSVDAYHSVIKYYP--EQE---PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI 252 (366)
T ss_pred HHHHHHHH-HhcchhhhhhHHHHHHHHHhCC--ccc---HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH
Confidence 44455566 4445889999999999887332 222 334568899999999999999999954432221 3335
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~ 221 (480)
.+..+.+.+|.-.++|.+|...+.+.+.. .+..+.+-++.|.+....|+ ..+|++.++.++...
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~----D~~~~~a~NnKALcllYlg~-l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRM----DPRNAVANNNKALCLLYLGK-LKDALKQLEAMVQQD 316 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhcccc----CCCchhhhchHHHHHHHHHH-HHHHHHHHHHHhccC
Confidence 67888999999999999999999998887 34445667788889999999 999999998887653
No 346
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.27 E-value=0.0049 Score=45.77 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=62.7
Q ss_pred HhccccHHHHHHHHHHHHHHh-h-ccCc---hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHH
Q psy875 47 YKDNKQYNLAVDYFNKELRLH-A-RNFP---EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRS 121 (480)
Q Consensus 47 ~~~~~~~~~A~~~~~~al~~~-~-~~~~---~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~ 121 (480)
..+.|+|..|++.+.+..... . .... ....+..++|.+ +...|++++|+..+++|+.++++.+|...+..++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~-~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAEL-HRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 456799999999999998886 2 2222 345677888999 555599999999999999999999999888887777
Q ss_pred HHHHH
Q psy875 122 IKKLY 126 (480)
Q Consensus 122 l~~~y 126 (480)
+..+.
T Consensus 87 ~~~l~ 91 (94)
T PF12862_consen 87 LANLL 91 (94)
T ss_pred HHHHh
Confidence 66554
No 347
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.25 E-value=0.00073 Score=39.22 Aligned_cols=29 Identities=34% Similarity=0.628 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 153 SCYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
.++..+|.+|..+|+|++|+++|++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34556666666666666666666666655
No 348
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.24 E-value=0.0009 Score=39.47 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNK 225 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 225 (480)
++.+||.+|..+|+ |++|+++|++++.+.+...
T Consensus 1 al~~Lg~~~~~~g~-~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGD-YEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccc
Confidence 47899999999999 9999999999998766543
No 349
>KOG3616|consensus
Probab=97.18 E-value=0.037 Score=55.01 Aligned_cols=112 Identities=18% Similarity=0.237 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHH------HHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH------
Q psy875 153 SCYISLAQTYKDNKQYNLAVDYFNK------ELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD------ 219 (480)
Q Consensus 153 ~~~~~la~~y~~~~~~~~A~~~~~~------al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~------ 219 (480)
..|-.-|.+|.+..++++|++||++ ++++..- .+......-...|.-+...|+ ++-|+.+|-+|-.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q-~daainhfiea~~~~kaie 740 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQ-LDAAINHFIEANCLIKAIE 740 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHh-HHHHHHHHHHhhhHHHHHH
Confidence 3455567788888888888888876 4444332 344555556667777777788 8777776655432
Q ss_pred -------------HHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875 220 -------------LARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLD 265 (480)
Q Consensus 220 -------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~ 265 (480)
+.....+.......|-.+++-|...|+|+-|.+.+.++-..++.|+
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~ 799 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAID 799 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHH
Confidence 2222233333334455677778888888888888887766666553
No 350
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.17 E-value=0.00075 Score=37.14 Aligned_cols=27 Identities=41% Similarity=0.767 Sum_probs=16.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 453 GWLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 453 g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
|.||+|+|+..++.++++.|++.|.++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 456666666666666666666666554
No 351
>KOG1839|consensus
Probab=97.16 E-value=0.012 Score=62.38 Aligned_cols=183 Identities=15% Similarity=0.109 Sum_probs=143.4
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhhhcC--CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc------ccccHH
Q psy875 81 IGDLYELQEKSFEIVQSTHEKALDLARQN--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD------LCKDLA 152 (480)
Q Consensus 81 lg~~y~~~~~~~~~A~~~~~kAl~~~~~~--~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~------~~~~~~ 152 (480)
.|.. ....+.+.+|.+ .-+++.+.... .-++..+..|..++.++..++++++|+.+-.++.-+. ..++..
T Consensus 938 ~gq~-~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 938 QGQE-ALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhh-hhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 3444 333377777777 66666554422 1247778999999999999999999999988776333 225667
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhh----hhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC--
Q psy875 153 SCYISLAQTYKDNKQYNLAVDYFNKELRL----HARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD-- 226 (480)
Q Consensus 153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-- 226 (480)
..|.+++...+..++...|...+.++..+ ...++|..+.+..+++.++...++ ++.|+.+.+.|+++.++..-
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e-~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE-ADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH-HHHHHHHHHHHHHHHhhhcCcc
Confidence 88999999999999999999999998876 223678888888999999999999 99999999999997776543
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875 227 DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~ 266 (480)
.......+..+++.+..++++..|....+....+....-.
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg 1134 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLG 1134 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhC
Confidence 3345667788999999999999999998888876655544
No 352
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.05 Score=45.27 Aligned_cols=100 Identities=10% Similarity=0.018 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHH
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIR 231 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 231 (480)
......+|..+.+.+++++|+..++.++....+ ......+-.+||.+...+|+ +++|+..+... .+.....
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D-e~lk~l~~lRLArvq~q~~k-~D~AL~~L~t~-------~~~~w~~ 159 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKD-ENLKALAALRLARVQLQQKK-ADAALKTLDTI-------KEESWAA 159 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchh-HHHHHHHHHHHHHHHHHhhh-HHHHHHHHhcc-------ccccHHH
Confidence 345667899999999999999999999876333 44556677899999999999 88887766443 3444555
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 232 TVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 232 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
......|+++..+|+-++|...|+++.+.
T Consensus 160 ~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 160 IVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 66678899999999999999999998764
No 353
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.10 E-value=0.0013 Score=38.16 Aligned_cols=29 Identities=34% Similarity=0.628 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRL 66 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 66 (480)
.+++.+|.+++..|++++|+++|++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46777777777777777777777777776
No 354
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.09 E-value=0.0013 Score=38.09 Aligned_cols=30 Identities=33% Similarity=0.690 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLH 182 (480)
Q Consensus 153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~ 182 (480)
.++..+|.+|..+|++++|+++|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 355666666666666666666666666653
No 355
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.07 E-value=0.023 Score=46.24 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHhhcc
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL-EEKLDL 266 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l-~~~~~~ 266 (480)
..+...++..+...|+ +++|+..+++++.. .|....++..+..+|..+|+..+|.+.|+++... .+.++.
T Consensus 62 ~~~~~~l~~~~~~~~~-~~~a~~~~~~~l~~------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 62 LDALERLAEALLEAGD-YEEALRLLQRALAL------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHhccC-HHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 4566778888899999 99999999999988 6777788899999999999999999999999764 445555
No 356
>KOG1463|consensus
Probab=97.06 E-value=0.17 Score=45.79 Aligned_cols=220 Identities=12% Similarity=0.063 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
+..-.....+|.++...|++.+--.......... .-..+..+.....+-......-+....-+......++.++..+..
T Consensus 45 ~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRt 124 (411)
T KOG1463|consen 45 KEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRT 124 (411)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHH
Confidence 3445677899999999999988777776666653 111222233333332222222255666677777788777655433
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHh----cccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--Cc
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVL----SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NF 186 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l----~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~ 186 (480)
......-..+..+|...++|.+|+......+ .......+..++..=..+|....+..+|..-+.-|-..... -+
T Consensus 125 FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp 204 (411)
T KOG1463|consen 125 FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP 204 (411)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC
Confidence 3333445588899999999999999887443 23344555667777788899999999998888776555333 23
Q ss_pred H-HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy875 187 P-EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIK 254 (480)
Q Consensus 187 ~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 254 (480)
| ..+..-..=|-++...++ |.-|..||-+|.+-+...+++.....++..|-.+-...+..++--...
T Consensus 205 PqlQa~lDLqSGIlha~ekD-ykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~ll 272 (411)
T KOG1463|consen 205 PQLQATLDLQSGILHAAEKD-YKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALL 272 (411)
T ss_pred HHHHHHHHHhccceeecccc-cchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3 334444444666666656 999999999999988777777767777777777777777777654443
No 357
>KOG0545|consensus
Probab=97.03 E-value=0.016 Score=49.72 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccc--------cc--------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSD--------LC--------KDLASCYISLAQTYKDNKQYNLAVDYFNKELR 180 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~--------~~--------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~ 180 (480)
.++..-|+-++..|+|.+|...|+.++..- |. ......+.|.++++...|+|-+++++....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999776321 11 12245788999999999999999999999988
Q ss_pred hhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 181 LHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
. .+....+|+.-|.++...=+ .++|..-|.+++++
T Consensus 259 ~----~~~nvKA~frRakAhaa~Wn-~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 259 H----HPGNVKAYFRRAKAHAAVWN-EAEAKADLQKVLEL 293 (329)
T ss_pred c----CCchHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhc
Confidence 7 66778899999999999989 99999999999987
No 358
>KOG4642|consensus
Probab=96.99 E-value=0.0033 Score=53.61 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy875 155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVM 234 (480)
Q Consensus 155 ~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 234 (480)
+..-|+.|+.-++|..|+.+|-+++.+ .|..+..|.+-+.+|++.++ ++.+..-.++|+.+ .+......
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~----nP~~~~Y~tnralchlk~~~-~~~v~~dcrralql------~~N~vk~h 81 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI----NPTVASYYTNRALCHLKLKH-WEPVEEDCRRALQL------DPNLVKAH 81 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc----CCCcchhhhhHHHHHHHhhh-hhhhhhhHHHHHhc------ChHHHHHH
Confidence 444577788889999999999999998 67777889999999999999 99999999999988 67778888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q psy875 235 RSMKKLYKKHDKFTELEQIKTELKSLEEKL 264 (480)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~ 264 (480)
..++........|.+|...++++..+...-
T Consensus 82 ~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 82 YFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998876553
No 359
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.18 Score=44.50 Aligned_cols=204 Identities=14% Similarity=0.072 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~ 111 (480)
..+.-.+...++.+|...|++..--+......+.. .-..+........+-.-+-.....++.-+......++.+.+.+.
T Consensus 41 ~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr 120 (421)
T COG5159 41 LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKR 120 (421)
T ss_pred hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999887666666555553 11223333333333222123336677778888888877665433
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHh----cccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--C
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVL----SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--N 185 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l----~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~ 185 (480)
.......-..+..++++.|+|.+|+....-.+ ....++.+...+..-..+|....+..++..-+..|-..... .
T Consensus 121 ~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC 200 (421)
T COG5159 121 KFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC 200 (421)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC
Confidence 33333344578889999999999999887433 33445666777887889999999998888877666555333 3
Q ss_pred cHHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy875 186 FPEA-VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSM 237 (480)
Q Consensus 186 ~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 237 (480)
||.. +..-..-|..+....+ |.-|..||-+|++-+............+..+
T Consensus 201 Ppqlqa~lDL~sGIlhcdd~d-yktA~SYF~Ea~Egft~l~~d~kAc~sLkYm 252 (421)
T COG5159 201 PPQLQAQLDLLSGILHCDDRD-YKTASSYFIEALEGFTLLKMDVKACVSLKYM 252 (421)
T ss_pred CHHHHHHHHHhccceeecccc-chhHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 3433 3333333445555556 9999999999998666555554433444433
No 360
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.96 E-value=0.011 Score=48.42 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHh
Q psy875 131 NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ----YNLAVDYFNKELR 180 (480)
Q Consensus 131 ~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~----~~~A~~~~~~al~ 180 (480)
-+++|+.-|++++.+.| ....++.++|.+|..++. ..+|.++|++|.+
T Consensus 50 miedAisK~eeAL~I~P--~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 50 MIEDAISKFEEALKINP--NKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATE 101 (186)
T ss_dssp HHHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 34556666666766654 445677777777776643 2344444444433
No 361
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.88 E-value=0.0021 Score=39.95 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875 154 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG 197 (480)
Q Consensus 154 ~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~ 197 (480)
++..+|.+|..+|++++|+..|+++++.. |....++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~----P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD----PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC----cCCHHHHHHhh
Confidence 45667777777777777777777777763 33344454444
No 362
>KOG2610|consensus
Probab=96.86 E-value=0.074 Score=48.03 Aligned_cols=165 Identities=12% Similarity=-0.020 Sum_probs=115.1
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHH
Q psy875 44 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIK 123 (480)
Q Consensus 44 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~ 123 (480)
+.+.+-+|++.+|-..+.+.++- .|....++..--.+|+.. |+.......++|.+..- ..+.+....+...++
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d----~PtDlla~kfsh~a~fy~-G~~~~~k~ai~kIip~w--n~dlp~~sYv~Gmya 182 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDD----YPTDLLAVKFSHDAHFYN-GNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYA 182 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHh----CchhhhhhhhhhhHHHhc-cchhhhhhHHHHhcccc--CCCCcHHHHHHHHHH
Confidence 44556677777777777776654 333333333333443444 66666666666655321 345566677777888
Q ss_pred HHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh
Q psy875 124 KLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ 203 (480)
Q Consensus 124 ~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~ 203 (480)
......|-|++|.+.-++++++.+.. ..+...++.++...+++.++.++..+.-..-........-.|-..|..+.+.
T Consensus 183 FgL~E~g~y~dAEk~A~ralqiN~~D--~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQINRFD--CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG 260 (491)
T ss_pred hhHHHhccchhHHHHHHhhccCCCcc--hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc
Confidence 99999999999999999999887654 3567778999999999999999988765443332223334456678888888
Q ss_pred CCchHHHHHHHHHHH
Q psy875 204 EKPFELVVSTHEKAL 218 (480)
Q Consensus 204 ~~~~~~A~~~~~~al 218 (480)
+. |+.|++.|..-+
T Consensus 261 ae-ye~aleIyD~ei 274 (491)
T KOG2610|consen 261 AE-YEKALEIYDREI 274 (491)
T ss_pred cc-hhHHHHHHHHHH
Confidence 99 999999998754
No 363
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.16 Score=44.95 Aligned_cols=179 Identities=10% Similarity=0.064 Sum_probs=126.3
Q ss_pred HhhccHHHHHHHHHHHHHhhhcCC--CchHHHHHHHHHHHHHHhcCChHHHHHHHH---HHhcccccccHHHHHHHHHHH
Q psy875 87 LQEKSFEIVQSTHEKALDLARQNK--DDKLIRTVMRSIKKLYKKHDNLDSACSELH---TVLSSDLCKDLASCYISLAQT 161 (480)
Q Consensus 87 ~~~~~~~~A~~~~~kAl~~~~~~~--~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~---~~l~~~~~~~~~~~~~~la~~ 161 (480)
...+++++|+..|.+.+.-....+ .....-.+..+++.+|...|++..--+... .+......+....+...|-.-
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiek 93 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEK 93 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHh
Confidence 334789999999888875321111 123344567899999999998876555444 334444444444444443322
Q ss_pred H-HhhccHHHHHHHHHHHHhhhhcCcH--HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy875 162 Y-KDNKQYNLAVDYFNKELRLHARNFP--EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMK 238 (480)
Q Consensus 162 y-~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 238 (480)
+ .....++.-++.+...++....... .....-..+..++++.|+ |.+|+....-.+...++..+.+....++..=+
T Consensus 94 f~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~-YsdalalIn~ll~ElKk~DDK~~Li~vhllES 172 (421)
T COG5159 94 FPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK-YSDALALINPLLHELKKYDDKINLITVHLLES 172 (421)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHhhcCccceeehhhhhH
Confidence 2 3446677777777777776544222 223344567888999999 99999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875 239 KLYKKHDKFTELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~~~~l~~~~~~ 266 (480)
++|.+..+..++..-+..+..++.++.-
T Consensus 173 Kvyh~irnv~KskaSLTaArt~Ans~YC 200 (421)
T COG5159 173 KVYHEIRNVSKSKASLTAARTLANSAYC 200 (421)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHhhccCC
Confidence 9999999999999998888877766543
No 364
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.84 E-value=0.0024 Score=37.04 Aligned_cols=29 Identities=34% Similarity=0.700 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRL 66 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 66 (480)
.+++.+|.+|...|++++|+++|++++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45666666666666666666666666665
No 365
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.83 E-value=0.0023 Score=35.05 Aligned_cols=28 Identities=46% Similarity=0.741 Sum_probs=18.9
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 418 GWLPLHEAANHGHTDIVQALVSAGADPN 445 (480)
Q Consensus 418 g~t~l~~a~~~~~~~~~~~Ll~~g~~~~ 445 (480)
|.||+|+++..++.++++.|++.|.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 5667777777777777777777665543
No 366
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.80 E-value=0.016 Score=47.62 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc----------HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHH
Q psy875 132 LDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ----------YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE 201 (480)
Q Consensus 132 ~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~ 201 (480)
|+.|.+.++......| .-+..+++.|.++.++.+ +++|+.-|++|+.+ .|....++.++|.+|.
T Consensus 7 FE~ark~aea~y~~nP--~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I----~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP--LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI----NPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc--HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc----CCchHHHHHHHHHHHH
Confidence 5566666665554443 334555555555555533 45566666667777 6777889999999998
Q ss_pred HhCC---chHHHHHHHHHHHHHHHH
Q psy875 202 LQEK---PFELVVSTHEKALDLARQ 223 (480)
Q Consensus 202 ~~~~---~~~~A~~~~~~al~~~~~ 223 (480)
.++. +..+|..+|++|...+++
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHH
Confidence 8663 145777788887776653
No 367
>KOG3609|consensus
Probab=96.76 E-value=0.0037 Score=62.83 Aligned_cols=114 Identities=18% Similarity=0.027 Sum_probs=84.0
Q ss_pred hccCCccchhhhccCC----CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCc
Q psy875 311 NRKRAPRSHFLIKRND----KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGE 386 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 386 (480)
..+|+-|..-.+.... .++|-.+.-+...++.|..+-+.+++++|++++... .
T Consensus 33 ~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-----------------------g 89 (822)
T KOG3609|consen 33 HENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-----------------------G 89 (822)
T ss_pred HHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-----------------------c
Confidence 4456655544333322 345556666778889999999999999999987554 2
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCC---------C-CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCc
Q psy875 387 TALHVAAARGNLTLVQSLLKQGHPV---------K-VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDK 447 (480)
Q Consensus 387 ~~l~~a~~~~~~~~~~~ll~~g~~~---------~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~ 447 (480)
.+|.+|+..|...+|+.++.+-.+. + ..=..+.|||.+||..++.+|++.|+++|+.+-.+
T Consensus 90 dALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P 160 (822)
T KOG3609|consen 90 DALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP 160 (822)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence 4578899999999999999763222 1 11235789999999999999999999999888743
No 368
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.76 E-value=0.091 Score=48.04 Aligned_cols=136 Identities=8% Similarity=0.014 Sum_probs=86.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV 118 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~ 118 (480)
+|..+.....+.+..+.|...|.+|++- .......|...|.+-+...++.+.|...|+.+++.+... ...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~----~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------~~~ 72 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD----KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------PDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------HHH
Confidence 4455556666667788888888888643 333344556667773443477777888888888776532 222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccccccc-HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-LASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
+..........++.+.|...|++++...+... ...+|......-...|+.+...+..+++.+....
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 33444566778888888888888886654433 3456666666667778888888887777776544
No 369
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.74 E-value=0.0037 Score=38.80 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD 83 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~ 83 (480)
.+++.+|..|...|++++|++.|+++++. .|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~----~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL----DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcCCHHHHHHhhh
Confidence 46788899999999999999999999988 5555555555553
No 370
>KOG2505|consensus
Probab=96.72 E-value=0.0022 Score=60.11 Aligned_cols=62 Identities=26% Similarity=0.302 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCCCCCC------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875 398 LTLVQSLLKQGHPVKVQ------DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461 (480)
Q Consensus 398 ~~~~~~ll~~g~~~~~~------~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~ 461 (480)
...++.|.+++.+.|.. +..-.|+||+|+..|..++|.+|++.|+|+. +.|..|.||..++.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~--~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPS--TKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCch--hcccCCCCcccccc
Confidence 56778888887766532 3345788888888888888888888888888 44888888888765
No 371
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.70 E-value=0.56 Score=44.52 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=84.6
Q ss_pred ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH-HHHHc---
Q psy875 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD-LARQN--- 224 (480)
Q Consensus 149 ~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~-~~~~~--- 224 (480)
...+..+..++.+..+.|+++.|..++.++...........+.+....+.+....|+ ..+|+..++..+. .....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~-~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE-QEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhhcccc
Confidence 456788899999999999999999999998876433222245667778999999999 9999999988877 22211
Q ss_pred ------------------------CCcHHHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHh
Q psy875 225 ------------------------KDDKLIRTVMRSMKKLYKKH------DKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 225 ------------------------~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~l~~~ 263 (480)
........++..+|...... +..+++...|+++.++..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 12345567777777777777 7778888888887776543
No 372
>KOG2471|consensus
Probab=96.69 E-value=0.011 Score=55.87 Aligned_cols=120 Identities=17% Similarity=0.083 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHh-ccccc----ccH--HHHHHHHHHHHHhhccHHHHHHHHHHHHhh-hh----
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVL-SSDLC----KDL--ASCYISLAQTYKDNKQYNLAVDYFNKELRL-HA---- 183 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l-~~~~~----~~~--~~~~~~la~~y~~~~~~~~A~~~~~~al~~-~~---- 183 (480)
.......+..++-.|+|.+|.+.+...- ...+. ++. ...++|||.++++++.|.-+..+|.+|++. ..
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3455677889999999999999987432 11111 233 344689999999999999999999999962 11
Q ss_pred c---------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy875 184 R---------NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYK 242 (480)
Q Consensus 184 ~---------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 242 (480)
+ .......++++.|..|...|+ +-.|.++|.++...+...+ +.+..|+++..
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~gr-Pl~AfqCf~~av~vfh~nP------rlWLRlAEcCi 380 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGR-PLLAFQCFQKAVHVFHRNP------RLWLRLAECCI 380 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCC-cHHHHHHHHHHHHHHhcCc------HHHHHHHHHHH
Confidence 1 122456789999999999999 9999999999998875432 34445565554
No 373
>KOG2505|consensus
Probab=96.65 E-value=0.004 Score=58.52 Aligned_cols=77 Identities=22% Similarity=0.220 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHc
Q psy875 349 QEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANH 428 (480)
Q Consensus 349 ~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~ 428 (480)
...|+.|.+++.+.|..... ... +.-.-|+||+|+..|...+|..||+.|+|+...|..|+||..++.
T Consensus 404 p~~ie~lken~lsgnf~~~p-------e~~---~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~-- 471 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTP-------EAN---DYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA-- 471 (591)
T ss_pred hhHHHHHHhcCCcccccccc-------ccc---ccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc--
Confidence 46788888888887765321 000 111679999999999999999999999999999999999988876
Q ss_pred CCHHHHHHHH
Q psy875 429 GHTDIVQALV 438 (480)
Q Consensus 429 ~~~~~~~~Ll 438 (480)
..+|-..++
T Consensus 472 -nkdVk~~F~ 480 (591)
T KOG2505|consen 472 -NKDVKSIFI 480 (591)
T ss_pred -cHHHHHHHH
Confidence 334444444
No 374
>KOG1550|consensus
Probab=96.64 E-value=0.17 Score=51.26 Aligned_cols=186 Identities=15% Similarity=0.191 Sum_probs=121.2
Q ss_pred cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q psy875 52 QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ----EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYK 127 (480)
Q Consensus 52 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~----~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~ 127 (480)
....|..+++.+-+. ....+...+|.+|+.- ..+.+.|+.+++.|..-.++.. ......+...+|.+|.
T Consensus 227 ~~~~a~~~~~~~a~~------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a-~~~~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA-TKGLPPAQYGLGRLYL 299 (552)
T ss_pred hhhHHHHHHHHHHhh------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH-hhcCCccccHHHHHHh
Confidence 356788888887766 3344556677774432 3689999999999987211110 0112335678899998
Q ss_pred hcC-----ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q psy875 128 KHD-----NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK---QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL 199 (480)
Q Consensus 128 ~~~-----~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 199 (480)
+.. +++.|+.+|.++-.... ..+.+.+|.+|..-. ++..|.+||..|... ....+.+.+|.+
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g~----~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------G~~~A~~~la~~ 369 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELGN----PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------GHILAIYRLALC 369 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcCC----chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------CChHHHHHHHHH
Confidence 854 67889999998764432 356778888887655 678999999998764 335667778887
Q ss_pred HHHh---CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHH
Q psy875 200 YELQ---EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH-DKFTELEQIKTELKSLEE 262 (480)
Q Consensus 200 ~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~l~~ 262 (480)
|..- ..+...|..+++++.+.- . ..+...++.++.-- +.+..+.-.+....++.-
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA~~g-----~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAAEKG-----N---PSAAYLLGAFYEYGVGRYDTALALYLYLAELGY 428 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHHHcc-----C---hhhHHHHHHHHHHccccccHHHHHHHHHHHhhh
Confidence 7652 233789999999986551 1 11222333333222 777777777766655443
No 375
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.64 E-value=0.28 Score=45.25 Aligned_cols=145 Identities=15% Similarity=0.127 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhc----cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHhhhcCC
Q psy875 38 SCYISLAQTYKD----NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ---EKSFEIVQSTHEKALDLARQNK 110 (480)
Q Consensus 38 ~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~~A~~~~~kAl~~~~~~~ 110 (480)
.....++..|.. ..+..+|+.+|..+.+. ......+.+|.+|..- ..++.+|..+|.+|.+......
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a 147 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA 147 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH
Confidence 467777777776 45688899999865543 3445667788885552 2489999999999987633211
Q ss_pred CchHHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHH
Q psy875 111 DDKLIRTVMRSIKKLYKKHD-------NLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKEL 179 (480)
Q Consensus 111 ~~~~~~~~~~~l~~~y~~~~-------~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al 179 (480)
..+...+|.+|..-. +..+|..+|.++-... ...+...+|.+|.. ..++.+|..+|.++-
T Consensus 148 -----~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa 218 (292)
T COG0790 148 -----ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAA 218 (292)
T ss_pred -----HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 344667788777642 3347888888765433 34677888888855 458999999999987
Q ss_pred hhhhcCcHHHHHHHHHHHHHHHHhC
Q psy875 180 RLHARNFPEAVKTLGEIGDLYELQE 204 (480)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (480)
+. .. ....+.++ +++..|
T Consensus 219 ~~----g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 219 EQ----GD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HC----CC--HHHHHHHH-HHHhcC
Confidence 75 12 56677777 666555
No 376
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.61 E-value=0.19 Score=40.80 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HcCCc
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR-QNKDD 227 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~ 227 (480)
..+...++..+...|++++|+..+++++.. .|..-.++..+-.+|...|+ +.+|+..|++...... +.+..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~----dP~~E~~~~~lm~~~~~~g~-~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALAL----DPYDEEAYRLLMRALAAQGR-RAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHHHhCcC
Confidence 356667888899999999999999999998 56666788889999999999 9999999999987655 34433
No 377
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.58 E-value=0.0049 Score=37.62 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHA 183 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~ 183 (480)
+.++.+||.+|..+|++++|+.++++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 35566777777777777777777777776643
No 378
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.56 E-value=0.065 Score=49.00 Aligned_cols=134 Identities=12% Similarity=0.141 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh-hccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD-NKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 196 (480)
+|..+.....+.+..+.|...|.+++... .....+|...|.+-.. .++.+.|...|+.+++.+..+ ...|...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~----~~~~~~Y 76 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD----PDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-----HHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC----HHHHHHH
Confidence 45556666677777999999999998433 2334678888888666 567777999999999985543 4556666
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
...+...++ .+.|...|++++.. .........++.....+-.+.|+.+......+++.++-
T Consensus 77 ~~~l~~~~d-~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 77 LDFLIKLND-INNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHTT--HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHhCc-HHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 778888898 99999999999764 12222245677788888899999999999888887764
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.52 E-value=0.048 Score=37.94 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
.+.-...-|.-.+...+.++|+..+.++++- ..+.++...++..+..+ +...|+|.+++.+..+-+.++....++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k-~~~~~~rf~~lG~l~qA-~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEK-ITDREDRFRVLGYLIQA-HMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4555666777788999999999999999998 66677788888888899 566699999999998888888766543
No 380
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.50 E-value=0.0021 Score=37.24 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=15.3
Q ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHH
Q psy875 175 FNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELV 210 (480)
Q Consensus 175 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 210 (480)
|++++++ .|..+.+|+++|.+|...|+ +++|
T Consensus 2 y~kAie~----~P~n~~a~~nla~~~~~~g~-~~~A 32 (34)
T PF13431_consen 2 YKKAIEL----NPNNAEAYNNLANLYLNQGD-YEEA 32 (34)
T ss_pred hHHHHHH----CCCCHHHHHHHHHHHHHCcC-HHhh
Confidence 3444444 33344455555555555555 5544
No 381
>KOG2053|consensus
Probab=96.46 E-value=0.37 Score=49.38 Aligned_cols=145 Identities=16% Similarity=0.079 Sum_probs=88.9
Q ss_pred ccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh
Q psy875 49 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK 128 (480)
Q Consensus 49 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~ 128 (480)
..+++.+|+.-..+.++- .|....+...-|.+ ..++|..++|..+++ ++...+.. | -..+..+-.+|..
T Consensus 21 d~~qfkkal~~~~kllkk----~Pn~~~a~vLkaLs-l~r~gk~~ea~~~Le-~~~~~~~~-D----~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK----HPNALYAKVLKALS-LFRLGKGDEALKLLE-ALYGLKGT-D----DLTLQFLQNVYRD 89 (932)
T ss_pred hhHHHHHHHHHHHHHHHH----CCCcHHHHHHHHHH-HHHhcCchhHHHHHh-hhccCCCC-c----hHHHHHHHHHHHH
Confidence 458999999999998887 55555544455667 666699999985543 44332222 2 2345678889999
Q ss_pred cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchH
Q psy875 129 HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE 208 (480)
Q Consensus 129 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (480)
++++++|..+|+++....|.. .....+-.+|.+-+.|.+-.+. ++++++..+......|..+..+...... .+
T Consensus 90 ~~~~d~~~~~Ye~~~~~~P~e---ell~~lFmayvR~~~yk~qQka---a~~LyK~~pk~~yyfWsV~Slilqs~~~-~~ 162 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQKYPSE---ELLYHLFMAYVREKSYKKQQKA---ALQLYKNFPKRAYYFWSVISLILQSIFS-EN 162 (932)
T ss_pred HhhhhHHHHHHHHHHhhCCcH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCCcccchHHHHHHHHHHhccC-Cc
Confidence 999999999999999888762 3334444555555555543222 3333333233333444445544444444 44
Q ss_pred HHH
Q psy875 209 LVV 211 (480)
Q Consensus 209 ~A~ 211 (480)
+..
T Consensus 163 ~~~ 165 (932)
T KOG2053|consen 163 ELL 165 (932)
T ss_pred ccc
Confidence 433
No 382
>KOG2041|consensus
Probab=96.43 E-value=0.16 Score=50.41 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=20.9
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTV 142 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~ 142 (480)
+.....++.++|..+..+-.+++|.+||.+.
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566677777777777777777777643
No 383
>KOG1463|consensus
Probab=96.40 E-value=0.5 Score=42.96 Aligned_cols=222 Identities=16% Similarity=0.073 Sum_probs=140.4
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHh-h-ccCc----hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 42 SLAQTYKDNKQYNLAVDYFNKELRLH-A-RNFP----EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 42 ~lg~~~~~~~~~~~A~~~~~~al~~~-~-~~~~----~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
..+.-.....++++++..+...+.-. + ...+ ..-.+...+|.+ +.+.|+.++-.......-....... ....
T Consensus 9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~l-l~~~~~~~~lr~li~~~Rpf~~~v~-Kaka 86 (411)
T KOG1463|consen 9 ERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDL-LAKEGDAEELRDLITSLRPFLSSVS-KAKA 86 (411)
T ss_pred HHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHH-HHhccchhHHHHHHHHHHHHHHHhh-hHHH
Confidence 34444555677889999988888743 1 1111 122456788999 5555888776555544443333222 2233
Q ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHHhcccccc--cH--HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHH
Q psy875 116 RTVMRSIKKLYKKH-DNLDSACSELHTVLSSDLCK--DL--ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPE 188 (480)
Q Consensus 116 ~~~~~~l~~~y~~~-~~~~~A~~~~~~~l~~~~~~--~~--~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~ 188 (480)
+.+...+-..+... +.++.-+..+...++-.... .. ...-..+..+|.+.++|.+|+......++-.++ +...
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l 166 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL 166 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 44444555555443 34555555555544322221 11 233456899999999999999999887766555 5556
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875 189 AVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK-LIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~ 266 (480)
....+..-..+|+...+ ..+|...+..|-..+...--+| .++..-..-|-++..-.+|.-|..|+-++.+-.++++.
T Consensus 167 Lvev~llESK~y~~l~N-l~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~ 244 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRN-LPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDD 244 (411)
T ss_pred eeeehhhhhHHHHHHhc-chhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCC
Confidence 67777788899999999 9999998888776554433333 44444445566667779999999999998876555544
No 384
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.39 E-value=0.0035 Score=36.30 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=27.3
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHH
Q psy875 59 YFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ 96 (480)
Q Consensus 59 ~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~ 96 (480)
+|++|+++ .|....+|+++|.+|... |++++|+
T Consensus 1 ~y~kAie~----~P~n~~a~~nla~~~~~~-g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL----NPNNAEAYNNLANLYLNQ-GDYEEAI 33 (34)
T ss_pred ChHHHHHH----CCCCHHHHHHHHHHHHHC-cCHHhhc
Confidence 47888888 788888999999995555 9999886
No 385
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.32 E-value=0.87 Score=41.97 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=123.1
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875 41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE---KSFEIVQSTHEKALDLARQNKDDKLIRT 117 (480)
Q Consensus 41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~---~~~~~A~~~~~kAl~~~~~~~~~~~~~~ 117 (480)
...+......+++..|+..+.++-.. ........++..|.... .+..+|..+|+++... ....
T Consensus 45 ~~~~~~~~~~~~~~~a~~~~~~a~~~------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--------g~~~ 110 (292)
T COG0790 45 LLNGAGSAYPPDYAKALKSYEKAAEL------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--------GLAE 110 (292)
T ss_pred ccccccccccccHHHHHHHHHHhhhc------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--------ccHH
Confidence 33344445678999999999988764 11145566777743322 4577888888855432 2245
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHhhhhcCc
Q psy875 118 VMRSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK-------QYNLAVDYFNKELRLHARNF 186 (480)
Q Consensus 118 ~~~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~-------~~~~A~~~~~~al~~~~~~~ 186 (480)
+..+||.+|.. ..++.+|..+|+++......+. ..+...+|..|..-. +...|..+|.++-...
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---- 185 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---- 185 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----
Confidence 66789999987 4599999999998875443221 344677887777642 3347888888876552
Q ss_pred HHHHHHHHHHHHHHHHh-C--CchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC---------------ChH
Q psy875 187 PEAVKTLGEIGDLYELQ-E--KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD---------------KFT 248 (480)
Q Consensus 187 ~~~~~~~~~l~~~~~~~-~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~ 248 (480)
...+...+|.+|..- | +++.+|..+|.+|-+. ++ ......++ ++...| +..
T Consensus 186 --~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~----g~----~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~ 254 (292)
T COG0790 186 --NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ----GD----GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKK 254 (292)
T ss_pred --CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CC----HHHHHHHH-HHHhcCCCchhhhhcccccCCCHH
Confidence 456778888888663 2 3389999999998654 22 45556666 555555 555
Q ss_pred HHHHHHHHHHH
Q psy875 249 ELEQIKTELKS 259 (480)
Q Consensus 249 ~A~~~~~~~~~ 259 (480)
.|..++.....
T Consensus 255 ~a~~~~~~~~~ 265 (292)
T COG0790 255 QALEWLQKACE 265 (292)
T ss_pred HHHHHHHHHHH
Confidence 56666555433
No 386
>KOG2581|consensus
Probab=96.23 E-value=0.4 Score=44.65 Aligned_cols=173 Identities=18% Similarity=0.152 Sum_probs=114.5
Q ss_pred HHHHHH-HHHHHHHhhccHHHHHHHHHHHHH-hhhcCCC--chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc----
Q psy875 75 VKTLGE-IGDLYELQEKSFEIVQSTHEKALD-LARQNKD--DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD---- 146 (480)
Q Consensus 75 ~~~~~~-lg~~y~~~~~~~~~A~~~~~kAl~-~~~~~~~--~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~---- 146 (480)
..+|.. ++.++....+++++|...-...+. +...... +...+.+|+-+..+|...|+...-..++...+...
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 344444 466656666889999888777663 2221111 12335678888888999998766666665444322
Q ss_pred ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC
Q psy875 147 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD 226 (480)
Q Consensus 147 ~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 226 (480)
.....+...+.|-..|...+.|++|.....++.---.......+..++.+|.+..-+++ |..|.+++-+|+..+.....
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqld-YssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLD-YSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcc-hhHHHHHHHHHHHhCcchhh
Confidence 22345667777889999999999999888775422112344778889999999999999 99999999999887654333
Q ss_pred cHHHHHHHHHHHHHHHHcCChH
Q psy875 227 DKLIRTVMRSMKKLYKKHDKFT 248 (480)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~g~~~ 248 (480)
--....+...+.-+-.-+|++.
T Consensus 283 lGf~q~v~k~~ivv~ll~geiP 304 (493)
T KOG2581|consen 283 LGFRQQVNKLMIVVELLLGEIP 304 (493)
T ss_pred hhHHHHHHHHHHHHHHHcCCCc
Confidence 3333444445555555566655
No 387
>KOG0545|consensus
Probab=96.18 E-value=0.059 Score=46.43 Aligned_cols=108 Identities=9% Similarity=-0.067 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--------Cc------HHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--------NF------PEAVKTLGEIGDLYELQEKPFELVVSTHEKA 217 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--------~~------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 217 (480)
..++..-|+-++..|+|.+|...|..|+-...+ ++ ......+.|.+.++...|+ |-++++.....
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e-~yevleh~sei 256 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEE-YYEVLEHCSEI 256 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHH-HHHHHHHHHHH
Confidence 456777899999999999999999998865332 11 2234568899999999999 99999999888
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875 218 LDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~ 266 (480)
+.. .+....+|+..|+.+..-=+..+|..-++.+.++..++..
T Consensus 257 L~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 257 LRH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred Hhc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 876 5667788999999999999999999999998887666543
No 388
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.17 E-value=1.2 Score=42.03 Aligned_cols=175 Identities=13% Similarity=0.072 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh---cCChHHHHHHHHHHhcccccccHHH
Q psy875 77 TLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK---HDNLDSACSELHTVLSSDLCKDLAS 153 (480)
Q Consensus 77 ~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~---~~~~~~A~~~~~~~l~~~~~~~~~~ 153 (480)
...++=.. |....+|+..++..+..-.+-. . +......+-...|.++.+ .|+.++|+..+..++.... .....
T Consensus 143 iv~~lllS-yRdiqdydamI~Lve~l~~~p~-~-~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~-~~~~d 218 (374)
T PF13281_consen 143 IVINLLLS-YRDIQDYDAMIKLVETLEALPT-C-DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDE-NPDPD 218 (374)
T ss_pred HHHHHHHH-hhhhhhHHHHHHHHHHhhccCc-c-chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC-CCChH
Confidence 33455555 4555888888777665443311 1 012223345567777777 8999999999998764433 23346
Q ss_pred HHHHHHHHHHhh---------ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH---
Q psy875 154 CYISLAQTYKDN---------KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA--- 221 (480)
Q Consensus 154 ~~~~la~~y~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~--- 221 (480)
++..+|.+|.++ ...++|+..|.++.++.+. ...-.|++.++...|.+++...+.-+-...+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-----~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ll 293 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-----YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLL 293 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-----ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence 777788887543 3577899999999888422 12234566667777763443333332222222
Q ss_pred -HH-cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 222 -RQ-NKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 222 -~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
++ ..........+..++.+..-.|++++|.+.++++..+
T Consensus 294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 294 GRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 11 1223334455667888899999999999999988764
No 389
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.15 E-value=0.015 Score=35.36 Aligned_cols=38 Identities=13% Similarity=0.293 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccCC
Q psy875 231 RTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNS 268 (480)
Q Consensus 231 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~~~ 268 (480)
..++.+||.+|..+|++++|..+++++..+...+...+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~ 39 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPD 39 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccc
Confidence 45788999999999999999999999999998886643
No 390
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.12 E-value=1.1 Score=41.04 Aligned_cols=224 Identities=15% Similarity=0.179 Sum_probs=123.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh-h-----ccCc----hHHHHHHHHHHHHHHhhccHHHH
Q psy875 27 VLSSDLCKDLASCYISLAQTYKDNK-QYNLAVDYFNKELRLH-A-----RNFP----EAVKTLGEIGDLYELQEKSFEIV 95 (480)
Q Consensus 27 ~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~-~-----~~~~----~~~~~~~~lg~~y~~~~~~~~~A 95 (480)
....+....++..+++.|.-....+ +++.|..++++|.++. . ...+ ....++..++.+| ...+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~-l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAY-LEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHH-HcCCChHHH
Confidence 4455667789999999999999999 9999999999999995 1 1111 2456778889994 554666544
Q ss_pred HHHHHHHHHhh-hcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHhhccHHHHH
Q psy875 96 QSTHEKALDLA-RQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC--KDLASCYISLAQTYKDNKQYNLAV 172 (480)
Q Consensus 96 ~~~~~kAl~~~-~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~la~~y~~~~~~~~A~ 172 (480)
.+ -.++++.. ...++++.+.. ..+ .+..+.++.+.+.+.+.+.+..... .....+...+ .-... .....|.
T Consensus 104 ~k-a~~~l~~l~~e~~~~~~~~~--L~l-~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i-~~l~~-~~~~~a~ 177 (278)
T PF08631_consen 104 EK-ALNALRLLESEYGNKPEVFL--LKL-EILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI-KQLAE-KSPELAA 177 (278)
T ss_pred HH-HHHHHHHHHHhCCCCcHHHH--HHH-HHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH-HHHHh-hCcHHHH
Confidence 33 22222222 23333333221 122 2223378899999999988765432 2222111111 11122 3345677
Q ss_pred HHHHHHHhhhhcCcHH-HHHHHHHHHHHHHHhC-CchHHH--HHHHHHHHHHHHHc----CCcH---HHHHHHHHHHHHH
Q psy875 173 DYFNKELRLHARNFPE-AVKTLGEIGDLYELQE-KPFELV--VSTHEKALDLARQN----KDDK---LIRTVMRSMKKLY 241 (480)
Q Consensus 173 ~~~~~al~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~~A--~~~~~~al~~~~~~----~~~~---~~~~~~~~l~~~~ 241 (480)
..+.+.+...-...+. ..... -+-.++...+ ++.... ++.....+....+. -..+ .....+.+.|.-.
T Consensus 178 ~~ld~~l~~r~~~~~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~ 256 (278)
T PF08631_consen 178 FCLDYLLLNRFKSSEDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKH 256 (278)
T ss_pred HHHHHHHHHHhCCChhHHHHHH-HHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 7777766542222222 11111 1222222222 111222 33333333322221 1111 2234555788999
Q ss_pred HHcCChHHHHHHHHHHH
Q psy875 242 KKHDKFTELEQIKTELK 258 (480)
Q Consensus 242 ~~~g~~~~A~~~~~~~~ 258 (480)
.+.++|.+|..+|+-+.
T Consensus 257 ~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 257 YKAKNYDEAIEWYELAL 273 (278)
T ss_pred HhhcCHHHHHHHHHHHH
Confidence 99999999999998665
No 391
>KOG4322|consensus
Probab=96.02 E-value=1.4 Score=41.63 Aligned_cols=187 Identities=9% Similarity=-0.014 Sum_probs=132.3
Q ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc---
Q psy875 72 PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC--- 148 (480)
Q Consensus 72 ~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--- 148 (480)
.......+.-+.++..+ +++..|-..+++.+-...+.........+...++.++.+-+.--.+..+.-.++.....
T Consensus 270 ~~svE~l~R~A~il~A~-~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~l 348 (482)
T KOG4322|consen 270 QQSVENLCRFAHILHAD-EQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSL 348 (482)
T ss_pred HhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhcc
Confidence 34455556678887777 88999999999998777777777788888889999998888766666665544422211
Q ss_pred -ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCc--HHHH-----HHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 149 -KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF--PEAV-----KTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 149 -~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~-----~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
-..+..-..++....-+|-.+.|+..+..++.....+. ...+ .+.+.++........+.+.+..++++|-.+
T Consensus 349 dyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~ 428 (482)
T KOG4322|consen 349 DYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSCANESLDGFPRYLDLAQSI 428 (482)
T ss_pred chhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHH
Confidence 22244556678888888999999999999987643210 0001 111222222222333388999999999999
Q ss_pred HHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 221 ARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
..+.+-.....++++.++..|-..|+.++=..+.-...+
T Consensus 429 f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk 467 (482)
T KOG4322|consen 429 FYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRK 467 (482)
T ss_pred HHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHH
Confidence 999999999999999999999999998775555444444
No 392
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.98 E-value=0.99 Score=42.83 Aligned_cols=167 Identities=18% Similarity=0.131 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHHHHh--------hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc------------CC-
Q psy875 52 QYNLAVDYFNKELRLH--------ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ------------NK- 110 (480)
Q Consensus 52 ~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~------------~~- 110 (480)
.|.++...|..+.... ....|....++..++.++..+ |++..|-+..++|+-.... ..
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~-gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~ 87 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQ-GDHAQANDLLERALFAFERAFHPSFSPFRSNLTS 87 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 4455555555554431 234666777788888884444 8888888888888743321 00
Q ss_pred ----------CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875 111 ----------DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR 180 (480)
Q Consensus 111 ----------~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~ 180 (480)
+.+..-.+.........+.|-+..|+++.+-.+..++..+-.-+...+=....+.++|+--++.++....
T Consensus 88 g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 88 GNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 1133444566777788899999999999998888877744334455566666677888877777776544
Q ss_pred hhhcC-cHHHHHHHHHHHHHHHHhCCch---------------HHHHHHHHHHHHH
Q psy875 181 LHARN-FPEAVKTLGEIGDLYELQEKPF---------------ELVVSTHEKALDL 220 (480)
Q Consensus 181 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~---------------~~A~~~~~~al~~ 220 (480)
....+ -...+..-+.++.+++..++ - ++|...+.+|+..
T Consensus 168 ~~~~~~~~~lPn~a~S~aLA~~~l~~-~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 168 KCYRNWLSLLPNFAFSIALAYFRLEK-EESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred hhhhhhhhhCccHHHHHHHHHHHhcC-ccccccccccccccchhHHHHHHHHHHHH
Confidence 21111 11234566677888888888 6 7888888888765
No 393
>KOG1550|consensus
Probab=95.97 E-value=0.15 Score=51.60 Aligned_cols=148 Identities=16% Similarity=0.119 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc-----CChHHHHHHHHHHhcc---cccccHHHHHHHHHHHHH
Q psy875 92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH-----DNLDSACSELHTVLSS---DLCKDLASCYISLAQTYK 163 (480)
Q Consensus 92 ~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~-----~~~~~A~~~~~~~l~~---~~~~~~~~~~~~la~~y~ 163 (480)
...|.++++.+-... ...+...+|.+|..- .+.++|+.+|+.+... ........+.+.+|.+|.
T Consensus 228 ~~~a~~~~~~~a~~g--------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYL 299 (552)
T ss_pred hhHHHHHHHHHHhhc--------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHh
Confidence 456777776665432 144556777777755 4899999999987651 111123346778999998
Q ss_pred hh----c-cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q psy875 164 DN----K-QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE--KPFELVVSTHEKALDLARQNKDDKLIRTVMRS 236 (480)
Q Consensus 164 ~~----~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 236 (480)
+. . +++.|+.+|.++-+. ....+.+.+|.++.... +++..|.++|..|... ....+...
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--------G~~~A~~~ 365 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAEL------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--------GHILAIYR 365 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhc------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--------CChHHHHH
Confidence 85 3 788999999998776 23456778888888876 5588999999998643 23455667
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHHH
Q psy875 237 MKKLYKK----HDKFTELEQIKTELKSLE 261 (480)
Q Consensus 237 l~~~~~~----~g~~~~A~~~~~~~~~l~ 261 (480)
++.+|.. .-+...|..+++++.+..
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 7777764 357888999999887744
No 394
>KOG2610|consensus
Probab=95.92 E-value=1.2 Score=40.66 Aligned_cols=159 Identities=9% Similarity=-0.081 Sum_probs=109.4
Q ss_pred HHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc-ccc-ccHHHHHHHHHHHHH
Q psy875 86 ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS-DLC-KDLASCYISLAQTYK 163 (480)
Q Consensus 86 ~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~-~~~-~~~~~~~~~la~~y~ 163 (480)
+.. |.+.+|-....|.++-++. -..+..---..+..+|+.......+++.+.. .++ |-...+.-.++..+.
T Consensus 114 ~~~-g~~h~a~~~wdklL~d~Pt------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 114 WGR-GKHHEAAIEWDKLLDDYPT------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hcc-ccccHHHHHHHHHHHhCch------hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 455 6777776666776654332 1223333446677888888888888887743 222 333555566788889
Q ss_pred hhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy875 164 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK 243 (480)
Q Consensus 164 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (480)
+.|-|++|.+..++++++ .+.-+-+...++-++.-.++ ..++.++..+.-..-+ .........|..-+.++..
T Consensus 187 E~g~y~dAEk~A~ralqi----N~~D~Wa~Ha~aHVlem~~r-~Keg~eFM~~ted~Wr--~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQI----NRFDCWASHAKAHVLEMNGR-HKEGKEFMYKTEDDWR--QSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HhccchhHHHHHHhhccC----CCcchHHHHHHHHHHHhcch-hhhHHHHHHhcccchh--hhhHHHhhhhHHHHHhhhc
Confidence 999999999999999999 33445566677888888899 8888888777654433 1122233455567888888
Q ss_pred cCChHHHHHHHHHHH
Q psy875 244 HDKFTELEQIKTELK 258 (480)
Q Consensus 244 ~g~~~~A~~~~~~~~ 258 (480)
-+.|+.|+..|..-+
T Consensus 260 ~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 260 GAEYEKALEIYDREI 274 (491)
T ss_pred ccchhHHHHHHHHHH
Confidence 899999999987643
No 395
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.88 E-value=1.5 Score=40.84 Aligned_cols=123 Identities=13% Similarity=0.107 Sum_probs=75.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY 200 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 200 (480)
.-+..+...|+..++-..++.+-+..+.|.++ .+|....--+.++.-++++-.+. .-.++........+..-
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia-------~lY~~ar~gdta~dRlkRa~~L~-slk~nnaes~~~va~aA 339 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPHPDIA-------LLYVRARSGDTALDRLKRAKKLE-SLKPNNAESSLAVAEAA 339 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCChHHH-------HHHHHhcCCCcHHHHHHHHHHHH-hcCccchHHHHHHHHHH
Confidence 34555666666666666666666555555533 33333333344555555544431 12344455666677777
Q ss_pred HHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q psy875 201 ELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH-DKFTELEQIKTELKS 259 (480)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 259 (480)
+.-|+ |..|..-.+.+.... ....++..|+++-... |+-.++.++..++..
T Consensus 340 lda~e-~~~ARa~Aeaa~r~~-------pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 340 LDAGE-FSAARAKAEAAAREA-------PRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred Hhccc-hHHHHHHHHHHhhhC-------chhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 77777 777777666665542 2446677888888777 999998888877654
No 396
>KOG2581|consensus
Probab=95.86 E-value=1.6 Score=40.88 Aligned_cols=213 Identities=15% Similarity=0.061 Sum_probs=137.6
Q ss_pred HHhccccHHHHHHHHHHHHHHh-hcc--Cc--hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875 46 TYKDNKQYNLAVDYFNKELRLH-ARN--FP--EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR 120 (480)
Q Consensus 46 ~~~~~~~~~~A~~~~~~al~~~-~~~--~~--~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~ 120 (480)
..+.+.++.+|.++-...+.-. ..+ .- -.+.+|+.+..+ +...++...-...+..-+..+.--.+....+...+
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~-~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN 213 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLS-YELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN 213 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence 3345789999999888766543 111 11 235678888888 44448877776777777777776667778888888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHh--cccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcH--HHHHHHHHH
Q psy875 121 SIKKLYKKHDNLDSACSELHTVL--SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP--EAVKTLGEI 196 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l--~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~l 196 (480)
.|-..|...+.|++|.+...+.. ....+..++...+.+|.+..-+.+|..|.+++-+|+...+.... ..-.+...+
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ 293 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLM 293 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHH
Confidence 89999999999999999988765 22233466888889999999999999999999999988654110 111122222
Q ss_pred HHHHHHhCCchH-----------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 197 GDLYELQEKPFE-----------LVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 197 ~~~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
..+-..+|. +. +++..|-+- ..+-+.++-.....++.....-+...|-|.-+.+.....++..
T Consensus 294 ivv~ll~ge-iPers~F~Qp~~~ksL~~Yf~L-t~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRLR~NVIkTg 367 (493)
T KOG2581|consen 294 IVVELLLGE-IPERSVFRQPGMRKSLRPYFKL-TQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRLRHNVIKTG 367 (493)
T ss_pred HHHHHHcCC-CcchhhhcCccHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHh
Confidence 223333444 43 333322111 1122334444455556666666777777777776666665543
No 397
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.71 E-value=0.025 Score=32.23 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 154 CYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 154 ~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
+++.+|.+|...|++++|+.+|++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4566677777777777777777666654
No 398
>KOG0376|consensus
Probab=95.70 E-value=0.023 Score=53.78 Aligned_cols=97 Identities=18% Similarity=0.138 Sum_probs=65.1
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHH
Q psy875 43 LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSI 122 (480)
Q Consensus 43 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l 122 (480)
-+.-...-+.|+.|+..|.+|+++ .+.-+..+.+.+.. +...++|..|+.-..+|++.. +....+|...
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l----dpnca~~~anRa~a-~lK~e~~~~Al~Da~kaie~d------P~~~K~Y~rr 78 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL----DPNCAIYFANRALA-HLKVESFGGALHDALKAIELD------PTYIKAYVRR 78 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc----CCcceeeechhhhh-heeechhhhHHHHHHhhhhcC------chhhheeeec
Confidence 344555667788888888888877 44444444455555 444477777777777777663 4446677777
Q ss_pred HHHHHhcCChHHHHHHHHHHhccccccc
Q psy875 123 KKLYKKHDNLDSACSELHTVLSSDLCKD 150 (480)
Q Consensus 123 ~~~y~~~~~~~~A~~~~~~~l~~~~~~~ 150 (480)
|.....++++.+|+.-|++.....|+..
T Consensus 79 g~a~m~l~~~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 79 GTAVMALGEFKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred cHHHHhHHHHHHHHHHHHHhhhcCcCcH
Confidence 7777777888888877777666665543
No 399
>KOG1308|consensus
Probab=95.67 E-value=0.0055 Score=55.23 Aligned_cols=92 Identities=17% Similarity=0.141 Sum_probs=77.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHH
Q psy875 122 IKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE 201 (480)
Q Consensus 122 l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~ 201 (480)
.+.-.+..|.+++|++.|..++... +..+.+|...+.++.++++...|+.-+..++++ ++..+.-|-.-|.+..
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei----n~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI----NPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhcc----CcccccccchhhHHHH
Confidence 3445567788999999999988665 566788999999999999999999999999999 5555666777788888
Q ss_pred HhCCchHHHHHHHHHHHHH
Q psy875 202 LQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 202 ~~~~~~~~A~~~~~~al~~ 220 (480)
.+|+ +++|...+..+.++
T Consensus 194 llg~-~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 194 LLGN-WEEAAHDLALACKL 211 (377)
T ss_pred Hhhc-hHHHHHHHHHHHhc
Confidence 8999 99999999998876
No 400
>KOG0686|consensus
Probab=95.61 E-value=0.21 Score=46.47 Aligned_cols=122 Identities=14% Similarity=0.067 Sum_probs=89.7
Q ss_pred HHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhccHHHHHHH
Q psy875 96 QSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQYNLAVDY 174 (480)
Q Consensus 96 ~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~~~~A~~~ 174 (480)
.+-++.-++-++.......+..++..+|.-|..-|+++.|+++|-++-..... ...+..+.++-.+-..+|+|-.-..|
T Consensus 130 le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy 209 (466)
T KOG0686|consen 130 LEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSY 209 (466)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhH
Confidence 34444455555555556777889999999999999999999999986654443 45577888888899999999999999
Q ss_pred HHHHHhhhhc----CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy875 175 FNKELRLHAR----NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKAL 218 (480)
Q Consensus 175 ~~~al~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al 218 (480)
..+|.+.... .....+...+.-|.+.+.+++ |..|..++-.+.
T Consensus 210 ~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkk-yk~aa~~fL~~~ 256 (466)
T KOG0686|consen 210 ISKAESTPDANENLAQEVPAKLKCAAGLANLLLKK-YKSAAKYFLLAE 256 (466)
T ss_pred HHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHH-HHHHHHHHHhCC
Confidence 9998877311 111123345556667777778 999999887653
No 401
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.60 E-value=0.26 Score=34.36 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=43.2
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC
Q psy875 157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD 226 (480)
Q Consensus 157 ~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 226 (480)
.-|.=++...+.++|+..+.++++...+ ++....++-.+..+|...|+ |.+++.+...-++++++.++
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gk-yr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGK-YREMLAFALQQLEIAEELED 78 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccC
Confidence 3344444666677777777777766444 44556666667777777777 77777776666666665544
No 402
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=95.56 E-value=0.84 Score=44.40 Aligned_cols=173 Identities=13% Similarity=0.014 Sum_probs=107.1
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhcc--CchHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHhhhcC-
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARN--FPEAVKTLGEIGDLYELQEKSF------EIVQSTHEKALDLARQN- 109 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~lg~~y~~~~~~~------~~A~~~~~kAl~~~~~~- 109 (480)
....||..++..++|+.|...|+.+.+-+..+ ....+.++-.+|.+.+...... +....+++.|+..+...
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 45668999999999999999999988875222 2334445555566644442221 36777888888766652
Q ss_pred ----CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc--ccccc---HHHHHHHHHHHH--HhhccHHHHHHHHHHH
Q psy875 110 ----KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS--DLCKD---LASCYISLAQTY--KDNKQYNLAVDYFNKE 178 (480)
Q Consensus 110 ----~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~--~~~~~---~~~~~~~la~~y--~~~~~~~~A~~~~~~a 178 (480)
.....-..+....+.++...+.+.+|...+-+.... ..... .+..+-.+|.+| ...........
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~----- 364 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLT----- 364 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccch-----
Confidence 222344556777888888999998888877755533 22222 344555566666 11100000000
Q ss_pred HhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875 179 LRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ 223 (480)
Q Consensus 179 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 223 (480)
.....+..+..-|.-|.+.|+ ...|..+|.+|+.+...
T Consensus 365 ------r~RK~af~~vLAg~~~~~~~~-~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 365 ------RFRKYAFHMVLAGHRYSKAGQ-KKHALRCYKQALQVYEG 402 (414)
T ss_pred ------hhHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHhCC
Confidence 012223333445778888899 99999999999987653
No 403
>KOG0686|consensus
Probab=95.46 E-value=0.24 Score=46.11 Aligned_cols=116 Identities=10% Similarity=0.022 Sum_probs=80.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy875 24 LHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKAL 103 (480)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl 103 (480)
+.-.+.....+.+-.++..+|..|..-|+++.|+++|.++..+ .......+..+.++-.+ ....|+|.....+-.+|.
T Consensus 137 Lk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~V-SI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 137 LKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILV-SIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHH-HHhhcchhhhhhHHHHHH
Confidence 4444444455667889999999999999999999999999888 54455556666666566 555688998888888887
Q ss_pred Hhhh----cCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q psy875 104 DLAR----QNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVL 143 (480)
Q Consensus 104 ~~~~----~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l 143 (480)
.... ....-+ ..+...-|...+.+++|..|.++|-.+.
T Consensus 215 st~~~~~~~~q~v~--~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 215 STPDANENLAQEVP--AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hCchhhhhHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6521 111111 1233344555566669999999888654
No 404
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.45 E-value=0.58 Score=39.58 Aligned_cols=80 Identities=13% Similarity=0.122 Sum_probs=60.9
Q ss_pred cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchH
Q psy875 129 HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE 208 (480)
Q Consensus 129 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (480)
.-.-++|..-|.++- ..+.-+.+.....||..|. ..+.++|+..+.+++++...+....+.++..|+.+|..+|+ ++
T Consensus 119 r~~d~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~-~e 195 (203)
T PF11207_consen 119 RFGDQEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN-YE 195 (203)
T ss_pred ccCcHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc-hh
Confidence 334566776665543 2233344677888898888 56789999999999999887656668899999999999999 98
Q ss_pred HHH
Q psy875 209 LVV 211 (480)
Q Consensus 209 ~A~ 211 (480)
+|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 875
No 405
>KOG2041|consensus
Probab=95.33 E-value=2.3 Score=42.75 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy875 73 EAVKTLGEIGDLYELQEKSFEIVQSTHEKALD 104 (480)
Q Consensus 73 ~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~ 104 (480)
....++.++|.. +..+..|++|.+||.+.-.
T Consensus 794 ~~e~A~r~ig~~-fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 794 GKEDAFRNIGET-FAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhccc
Confidence 356788999999 5555889999999876543
No 406
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.31 E-value=0.36 Score=43.18 Aligned_cols=90 Identities=14% Similarity=0.109 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy875 167 QYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH 244 (480)
Q Consensus 167 ~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (480)
.-...++.+.+|++.+.. ...........+|..|+..|+ |++|..+|+.+....++.+-......++..+..++...
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~-~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGD-YDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 344567777788777655 345556677799999999999 99999999999989898888889999999999999999
Q ss_pred CChHHHHHHHHHH
Q psy875 245 DKFTELEQIKTEL 257 (480)
Q Consensus 245 g~~~~A~~~~~~~ 257 (480)
|+.+....+.-+.
T Consensus 232 ~~~~~~l~~~leL 244 (247)
T PF11817_consen 232 GDVEDYLTTSLEL 244 (247)
T ss_pred CCHHHHHHHHHHH
Confidence 9999887765443
No 407
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.31 E-value=2.3 Score=38.93 Aligned_cols=133 Identities=16% Similarity=0.143 Sum_probs=88.8
Q ss_pred HhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhhhc-C---C---Cc-h
Q psy875 47 YKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEK-SFEIVQSTHEKALDLARQ-N---K---DD-K 113 (480)
Q Consensus 47 ~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~-~~~~A~~~~~kAl~~~~~-~---~---~~-~ 113 (480)
.+.+|+++.|..++.|+-.+. .......+..++++|...+.. + +++.|..++++|+++... . . +. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~-~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSK-KDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 357899999999999998874 122234567889999984444 8 999999999999998543 1 1 11 3
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHH---HHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACS---ELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH 182 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~---~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~ 182 (480)
....++..++.+|...+.++...+ +.+......++ ....+..-=.+..+.++.+++.+.+.+.+...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN--KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 456788999999999987664444 33333222322 12222222223333788888888888877653
No 408
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.03 E-value=0.045 Score=31.09 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=17.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRL 66 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 66 (480)
+++.+|.++...|++++|++.|++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4566666666666666666666666554
No 409
>KOG4814|consensus
Probab=94.92 E-value=4.5 Score=40.33 Aligned_cols=103 Identities=14% Similarity=0.059 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA 189 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 189 (480)
.+..++.+-|.-..+..+|..|+++|..++...+. ...+....+++.+|..+.+.+.|.+++++|-+. .+..
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~----d~~~ 427 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV----DRQS 427 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh----cccc
Confidence 44556778888899999999999999988765443 334778889999999999999999999999887 4444
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~ 221 (480)
+.....+-.+....++ -++|+....+.....
T Consensus 428 ~l~q~~~~~~~~~E~~-Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 428 PLCQLLMLQSFLAEDK-SEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHHHHhcc-hHHHHHHHHHHHhhh
Confidence 5566667777778888 889998888776544
No 410
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.82 E-value=1 Score=43.50 Aligned_cols=126 Identities=9% Similarity=0.066 Sum_probs=89.1
Q ss_pred HHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-------------------
Q psy875 124 KLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR------------------- 184 (480)
Q Consensus 124 ~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~------------------- 184 (480)
.-..+..+.++-++.-++|+++. ++.+.+|..||.-. ..-..+|+.+|+++++..+.
T Consensus 176 q~AWRERnp~aRIkaA~eALei~--pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEIN--PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhh--hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence 33445567777888888888776 44556666665422 23356788888887766322
Q ss_pred --CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875 185 --NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK 258 (480)
Q Consensus 185 --~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 258 (480)
+......+-..+|.+..++|+ .++|++.++..++... ......+..+|..++..++.|.++...+.++.
T Consensus 252 ~Rdt~~~~y~KrRLAmCarklGr-~~EAIk~~rdLlke~p----~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARKLGR-LREAIKMFRDLLKEFP----NLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred ccccchhhhhHHHHHHHHHHhCC-hHHHHHHHHHHHhhCC----ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 011124556789999999999 9999999988876531 22355688899999999999999999998874
No 411
>KOG0985|consensus
Probab=94.80 E-value=2.9 Score=44.03 Aligned_cols=191 Identities=18% Similarity=0.121 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
...|..+|....+.|...+|++.|-+|- .| ..|...-.+ ..+.|.|++-++|+.-|-+-.+...-...+.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad------Dp---s~y~eVi~~-a~~~~~~edLv~yL~MaRkk~~E~~id~eLi 1173 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD------DP---SNYLEVIDV-ASRTGKYEDLVKYLLMARKKVREPYIDSELI 1173 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC------Cc---HHHHHHHHH-HHhcCcHHHHHHHHHHHHHhhcCccchHHHH
Confidence 3467788888888889999988887652 12 223333344 3445889999888888876665554444444
Q ss_pred HHHH---------------------HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHH
Q psy875 117 TVMR---------------------SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYF 175 (480)
Q Consensus 117 ~~~~---------------------~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~ 175 (480)
.+|. ..|.-.+..|.|+.|.-+|.. ..-+..||.++..+|+|+-|....
T Consensus 1174 ~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN----------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3333 233333333444444333322 123455788888889999999888
Q ss_pred HHHHhhh--hc------Cc-------------HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy875 176 NKELRLH--AR------NF-------------PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVM 234 (480)
Q Consensus 176 ~~al~~~--~~------~~-------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 234 (480)
+||-.+. +. +. ...+.-+-.+-..|...|- +++-+..++.++-+ .......+
T Consensus 1244 RKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGy-FeElIsl~Ea~LGL------ERAHMgmf 1316 (1666)
T KOG0985|consen 1244 RKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGY-FEELISLLEAGLGL------ERAHMGMF 1316 (1666)
T ss_pred hhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCc-HHHHHHHHHhhhch------hHHHHHHH
Confidence 8764430 00 00 0112334456666777777 77777777777655 34555566
Q ss_pred HHHHHHHHHcCChHHHHHHHH
Q psy875 235 RSMKKLYKKHDKFTELEQIKT 255 (480)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~ 255 (480)
..||-+|.+- ++++-.+.++
T Consensus 1317 TELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1317 TELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred HHHHHHHHhc-CHHHHHHHHH
Confidence 6777666554 3444444443
No 412
>KOG4507|consensus
Probab=94.73 E-value=0.077 Score=51.49 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=62.0
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHH
Q psy875 80 EIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA 159 (480)
Q Consensus 80 ~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la 159 (480)
++|.+|+...|+...|+.++..|+...+...+ ....+|+.+....|-...|-.++.+++.+..... ..++.+|
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep--l~~~~~g 683 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLHLDATKLLLQALAINSSEP--LTFLSLG 683 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc--hHHHhcc
Confidence 34555566667777777777777755443222 2234677777777777777777777766553322 4456677
Q ss_pred HHHHhhccHHHHHHHHHHHHhhhh
Q psy875 160 QTYKDNKQYNLAVDYFNKELRLHA 183 (480)
Q Consensus 160 ~~y~~~~~~~~A~~~~~~al~~~~ 183 (480)
+.|..+.+.+.|++.|+.|++...
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCC
Confidence 777777777777777777777633
No 413
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.70 E-value=0.38 Score=43.05 Aligned_cols=85 Identities=14% Similarity=0.069 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc----cHHHHHHHHHHHHHhhc
Q psy875 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK----DLASCYISLAQTYKDNK 166 (480)
Q Consensus 91 ~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~~~la~~y~~~~ 166 (480)
.-...+..+.+|+..++..+.......+...+|..|...|+|++|+++|+.+....... -...++..+..++...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 34455666777776666666666666666677777777777777777777664333221 12445555666666666
Q ss_pred cHHHHHHHH
Q psy875 167 QYNLAVDYF 175 (480)
Q Consensus 167 ~~~~A~~~~ 175 (480)
+.+..+.+.
T Consensus 233 ~~~~~l~~~ 241 (247)
T PF11817_consen 233 DVEDYLTTS 241 (247)
T ss_pred CHHHHHHHH
Confidence 666555544
No 414
>KOG0376|consensus
Probab=94.54 E-value=0.057 Score=51.28 Aligned_cols=93 Identities=17% Similarity=0.104 Sum_probs=58.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY 200 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 200 (480)
+-+.-++.-++|+.|+..|.+++... ++.+..+.+-+..+.+.++|..|+.-+.++++. .|....+|..-|.++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~----dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIEL----DPTYIKAYVRRGTAV 82 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhc----CchhhheeeeccHHH
Confidence 34455556666777777777766544 333445555666666777777777766666666 456666666666666
Q ss_pred HHhCCchHHHHHHHHHHHHH
Q psy875 201 ELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~ 220 (480)
...++ +.+|..-|++...+
T Consensus 83 m~l~~-~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 83 MALGE-FKKALLDLEKVKKL 101 (476)
T ss_pred HhHHH-HHHHHHHHHHhhhc
Confidence 66666 66666666665544
No 415
>KOG1308|consensus
Probab=94.49 E-value=0.042 Score=49.78 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=77.6
Q ss_pred HHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh
Q psy875 86 ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN 165 (480)
Q Consensus 86 ~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~ 165 (480)
+.. |.++.|+..+..|+.+.. ..+.+|...+.+++++++...|+.-+..++.+.++. +.-|-.-|.....+
T Consensus 125 ln~-G~~~~ai~~~t~ai~lnp------~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds--a~~ykfrg~A~rll 195 (377)
T KOG1308|consen 125 LND-GEFDTAIELFTSAIELNP------PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS--AKGYKFRGYAERLL 195 (377)
T ss_pred hcC-cchhhhhcccccccccCC------chhhhcccccceeeeccCCchhhhhhhhhhccCccc--ccccchhhHHHHHh
Confidence 344 677777777777776633 335667777777777777777777777777666442 34455566666677
Q ss_pred ccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy875 166 KQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEK 216 (480)
Q Consensus 166 ~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 216 (480)
|+|++|-.++..+.++--+ .....-...-+.+.+-...++ ++.+.+.-..
T Consensus 196 g~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k-~er~~~e~~~ 247 (377)
T KOG1308|consen 196 GNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRK-YERAREEREI 247 (377)
T ss_pred hchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhH-HHHHHHHhcc
Confidence 7777777777777666222 233334445556666666677 7777766643
No 416
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.38 E-value=4 Score=39.03 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHH--HHHHH---Hhh
Q psy875 33 CKDLASCYISLAQTYKDNKQ-YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQST--HEKAL---DLA 106 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~--~~kAl---~~~ 106 (480)
...++..++..|.-+++.|+ -++|++.++.+++. .+ ....+-+.+ .. +.. ..|.+|+.. +.+.+ ...
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f-t~---yD~ec~n~v-~~-fvK-q~Y~qaLs~~~~~rLlkLe~fi 447 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF-TN---YDIECENIV-FL-FVK-QAYKQALSMHAIPRLLKLEDFI 447 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-cc---ccHHHHHHH-HH-HHH-HHHHHHHhhhhHHHHHHHHHHH
Confidence 34567777888999999888 89999999999988 22 222221111 11 111 234444321 11111 111
Q ss_pred hcCCCc------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy875 107 RQNKDD------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNK 177 (480)
Q Consensus 107 ~~~~~~------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~ 177 (480)
...+-+ ..++. ...=|...+..|+|.++.-|-.-...+.|.+ .+|..+|.+....++|++|..++..
T Consensus 448 ~e~gl~~i~i~e~eian-~LaDAEyLysqgey~kc~~ys~WL~~iaPS~---~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 448 TEVGLTPITISEEEIAN-FLADAEYLYSQGEYHKCYLYSSWLTKIAPSP---QAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HhcCCCcccccHHHHHH-HHHHHHHHHhcccHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 111111 12221 2233456678899999998888666666633 5788899999999999999999865
No 417
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.33 E-value=4.8 Score=38.08 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc--cHHHHHHHHHHHHHhhccHHHHHHHHHHHHh-hhhc------
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK--DLASCYISLAQTYKDNKQYNLAVDYFNKELR-LHAR------ 184 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~~la~~y~~~~~~~~A~~~~~~al~-~~~~------ 184 (480)
..+..+..++.+.++.|+++.|..++.++....+.. ....+...-+.+.-..|+..+|+..++..+. ....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 445677789999999999999999999887654321 1346677788999999999999999988777 2111
Q ss_pred -----------------------CcHHHHHHHHHHHHHHHHh------CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy875 185 -----------------------NFPEAVKTLGEIGDLYELQ------EKPFELVVSTHEKALDLARQNKDDKLIRTVMR 235 (480)
Q Consensus 185 -----------------------~~~~~~~~~~~l~~~~~~~------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 235 (480)
.....+.++..+|...... +. .+++...|.++..+ .+....++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~-~~~~~~~~~~a~~~------~~~~~k~~~ 296 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSES-SDEILKYYKEATKL------DPSWEKAWH 296 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcccccccc-HHHHHHHHHHHHHh------ChhHHHHHH
Confidence 2344567788888887777 77 88899999999877 444445666
Q ss_pred HHHHHHHHc
Q psy875 236 SMKKLYKKH 244 (480)
Q Consensus 236 ~l~~~~~~~ 244 (480)
.+|..+.+.
T Consensus 297 ~~a~~~~~~ 305 (352)
T PF02259_consen 297 SWALFNDKL 305 (352)
T ss_pred HHHHHHHHH
Confidence 666665544
No 418
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.31 E-value=4.9 Score=38.02 Aligned_cols=173 Identities=14% Similarity=0.097 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ---EKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
.+..++=..|..-.+|+.-++.++..-.+-..+.......-...|.+ ... .|+.++|+..+..++.-.... +
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafA-LnRrn~~gdre~Al~il~~~l~~~~~~-~--- 216 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFA-LNRRNKPGDREKALQILLPVLESDENP-D--- 216 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHH-HhhcccCCCHHHHHHHHHHHHhccCCC-C---
Confidence 34455666677888888888887776555111112222333445666 444 699999999998876443221 1
Q ss_pred HHHHHHHHHHHHHh---------cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHH-HHhhh--
Q psy875 115 IRTVMRSIKKLYKK---------HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNK-ELRLH-- 182 (480)
Q Consensus 115 ~~~~~~~l~~~y~~---------~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~-al~~~-- 182 (480)
..++..+|.+|-. ....++|+..|.++....++. ..-.|++.++.-.|.-.+...-.++ ++.+.
T Consensus 217 -~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~l 292 (374)
T PF13281_consen 217 -PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY---YSGINAATLLMLAGHDFETSEELRKIGVKLSSL 292 (374)
T ss_pred -hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 2234444444432 335889999999998777432 3345666666666653333322333 22221
Q ss_pred ---hc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 183 ---AR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 183 ---~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
++ ........+-.++.+..-.|+ +++|...++++.+.
T Consensus 293 lg~kg~~~~~~dYWd~ATl~Ea~vL~~d-~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 293 LGRKGSLEKMQDYWDVATLLEASVLAGD-YEKAIQAAEKAFKL 334 (374)
T ss_pred HHhhccccccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhc
Confidence 11 122223334567778888899 99999999999866
No 419
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.31 E-value=0.082 Score=29.29 Aligned_cols=28 Identities=29% Similarity=0.584 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 154 CYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 154 ~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
++..+|.++..++++++|+.++++++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4556666777777777777776666654
No 420
>KOG4814|consensus
Probab=94.28 E-value=6.5 Score=39.32 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=72.0
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
++-+-|.-.++..+|..|+++|...+... .......+.....++.+ |..+.+.+.|.+++++|-+..++. .
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~C-YL~L~QLD~A~E~~~EAE~~d~~~------~ 428 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVC-YLKLEQLDNAVEVYQEAEEVDRQS------P 428 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhhcccc------H
Confidence 44455666778899999999999999886 33334456777888888 555599999999999998775433 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhc
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLS 144 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~ 144 (480)
.....+-.+...-+.-++|+.+..+...
T Consensus 429 l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 429 LCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 2333455666777888999998886554
No 421
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=94.22 E-value=0.23 Score=40.90 Aligned_cols=111 Identities=17% Similarity=0.177 Sum_probs=70.8
Q ss_pred CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHH---H-HHHhcCCC
Q psy875 335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLV---Q-SLLKQGHP 410 (480)
Q Consensus 335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~---~-~ll~~g~~ 410 (480)
..+.++-.||+..+.++|+|+-. +.... +-.+.+-.|....+.++. - .++++..+
T Consensus 75 ~~q~LFElAC~~qkydiV~WI~q---nL~i~------------------~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~ 133 (192)
T PF03158_consen 75 LNQELFELACEEQKYDIVKWIGQ---NLHIY------------------NPEDIFDIAFAKKDLSLYSLGYKLLFNRMMS 133 (192)
T ss_pred HHHHHHHHHHHHccccHHHHHhh---ccCCC------------------CchhhhhhhhhccchhHHHHHHHHHHhhccc
Confidence 44567778888889999998822 11111 133445666666665431 1 12222221
Q ss_pred CCCCCCC--CChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875 411 VKVQDSA--GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474 (480)
Q Consensus 411 ~~~~~~~--g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 474 (480)
....|.. -..-|.+|+..|..+.+.-.+++|.+++ .++|..|+..+|..++.+++.
T Consensus 134 ~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~--------~~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 134 EHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD--------IIVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred ccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc--------HHHHHHHHHhhHHHHHHHhhc
Confidence 1111100 0112568999999999999999998877 289999999999999988864
No 422
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.16 E-value=2.7 Score=34.55 Aligned_cols=100 Identities=11% Similarity=0.057 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHH--HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA--SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL 193 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~--~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 193 (480)
..+....+.+....|+-..|+.+|.+.-...+.|... .+...-+.++.+.|-|++-..-.+ .+..+..+....+.
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srve---pLa~d~n~mR~sAr 170 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVE---PLAGDGNPMRHSAR 170 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhh---hccCCCChhHHHHH
Confidence 3456788999999999999999999887766666553 344556778888899987655432 23333466777888
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875 194 GEIGDLYELQEKPFELVVSTHEKALD 219 (480)
Q Consensus 194 ~~l~~~~~~~~~~~~~A~~~~~~al~ 219 (480)
..||..-++.|+ +.+|...|.+...
T Consensus 171 EALglAa~kagd-~a~A~~~F~qia~ 195 (221)
T COG4649 171 EALGLAAYKAGD-FAKAKSWFVQIAN 195 (221)
T ss_pred HHHhHHHHhccc-hHHHHHHHHHHHc
Confidence 899999999999 9999999988754
No 423
>KOG0687|consensus
Probab=94.03 E-value=3 Score=37.95 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~ 111 (480)
.....++..+|..|.+-|+-+.|++.+.+..+-. .+...+...+...+|.+| ++.+-..+..++|-.+..+.+|
T Consensus 101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy----~D~~lV~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFY----LDHDLVTESIEKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHhCCC
Confidence 3567899999999999999999999999887764 344555666677788884 4566667778888888888887
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC 148 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~ 148 (480)
.......-.--|.......+|.+|...|-.++.....
T Consensus 177 WeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 177 WERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 7544433344556666778999999999988765554
No 424
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.65 E-value=0.12 Score=28.59 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccc
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDL 147 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~ 147 (480)
.++..+|.++..++++++|+.++++++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3578899999999999999999999886543
No 425
>KOG4014|consensus
Probab=93.54 E-value=1.8 Score=35.86 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=94.8
Q ss_pred ccHHHHH-HHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh-----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Q psy875 90 KSFEIVQ-STHEKALDLARQNKDDKLIRTVMRSIKKLYKK-----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYK 163 (480)
Q Consensus 90 ~~~~~A~-~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~-----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~ 163 (480)
|+|-+++ +-|++|..+++..-+........+.+|..+.. .++...|+++|..+... +...+..++|.+.-
T Consensus 41 gdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----n~~~aC~~~gLl~~ 116 (248)
T KOG4014|consen 41 GDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----NIPQACRYLGLLHW 116 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----CCHHHHhhhhhhhc
Confidence 4554544 44666666666666665555566666655442 34789999999988752 23344555665554
Q ss_pred hh-----cc--HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHH------------------------hCCchHHHHH
Q psy875 164 DN-----KQ--YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL------------------------QEKPFELVVS 212 (480)
Q Consensus 164 ~~-----~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~------------------------~~~~~~~A~~ 212 (480)
.- ++ ..+|++|+.++-++-. ..+.++|+..|.. .++ .++|.+
T Consensus 117 ~g~~~r~~dpd~~Ka~~y~traCdl~~------~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kD-Mdka~q 189 (248)
T KOG4014|consen 117 NGEKDRKADPDSEKAERYMTRACDLED------GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKD-MDKALQ 189 (248)
T ss_pred cCcCCccCCCCcHHHHHHHHHhccCCC------chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHh-HHHHHH
Confidence 22 23 6789999988766521 2223333333332 233 566666
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHhhcc
Q psy875 213 THEKALDLARQNKDDKLIRTVMRSMKKLYKKH----DKFTELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 213 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~l~~~~~~ 266 (480)
+.-+|-++ ....+..++++.|..- ++.++|..|-.++.++.+.+..
T Consensus 190 fa~kACel--------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k 239 (248)
T KOG4014|consen 190 FAIKACEL--------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRK 239 (248)
T ss_pred HHHHHHhc--------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHc
Confidence 66666554 1234445666666532 4678899999999998877654
No 426
>KOG2053|consensus
Probab=93.50 E-value=1.2 Score=45.97 Aligned_cols=87 Identities=13% Similarity=0.015 Sum_probs=63.1
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH
Q psy875 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN 169 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~ 169 (480)
++|.+|+.-..+.++-.+ + ...+...-|.+..++|+.++|..+++..-..... --..+.-+-.+|.++++++
T Consensus 23 ~qfkkal~~~~kllkk~P---n---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHP---N---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HHHHHHHHHHHHHHHHCC---C---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhhh
Confidence 678888777776665433 2 2334445677889999999999777743322222 2356777889999999999
Q ss_pred HHHHHHHHHHhhhhc
Q psy875 170 LAVDYFNKELRLHAR 184 (480)
Q Consensus 170 ~A~~~~~~al~~~~~ 184 (480)
+|..+|++++...++
T Consensus 95 ~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 95 EAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHHHhhCCc
Confidence 999999999987554
No 427
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=93.32 E-value=5.5 Score=35.29 Aligned_cols=179 Identities=13% Similarity=0.121 Sum_probs=90.6
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875 40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVM 119 (480)
Q Consensus 40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~ 119 (480)
+..+|.+....++|++++.++.+++.. ...... .-.+.++.+|....|....+...+.....-....+.......+-
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~-~~eLt~--eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEM-NPELTE--EERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHT-SS---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc-CCCCCH--HHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence 567888999999999999999999988 322222 22244555654554555555555544333222222221111111
Q ss_pred HHHHHHHHhcC-ChHHHHHHHHHHhcccc-ccc-HHHHHHHHHHHHHhh-----c-----cHHHHHHHHHHHHhhhhc--
Q psy875 120 RSIKKLYKKHD-NLDSACSELHTVLSSDL-CKD-LASCYISLAQTYKDN-----K-----QYNLAVDYFNKELRLHAR-- 184 (480)
Q Consensus 120 ~~l~~~y~~~~-~~~~A~~~~~~~l~~~~-~~~-~~~~~~~la~~y~~~-----~-----~~~~A~~~~~~al~~~~~-- 184 (480)
...-.+-..+. --.+.+......+-... .+. .+..+-..|..|... | -.++|...|++|+++...
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 160 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL 160 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc
Confidence 11111111100 11122222222221110 111 111122223333211 1 236888899998888555
Q ss_pred --CcHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHH
Q psy875 185 --NFPEAVKTLGEIGDLYEL-QEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 185 --~~~~~~~~~~~l~~~~~~-~~~~~~~A~~~~~~al~~~~ 222 (480)
.+|.......|.+..|+. .|+ .++|....++|+..+.
T Consensus 161 ~~~~p~rLgl~LN~svF~yei~~~-~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 161 PPTHPLRLGLALNYSVFYYEILND-PEKAIEIAKQAFDEAI 200 (236)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHH
Confidence 456666666677776655 566 9999999998887654
No 428
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.28 E-value=0.15 Score=30.14 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875 154 CYISLAQTYKDNKQYNLAVDYFNKELRLH 182 (480)
Q Consensus 154 ~~~~la~~y~~~~~~~~A~~~~~~al~~~ 182 (480)
+|..||.+-...++|++|+.-|++++++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666653
No 429
>KOG3783|consensus
Probab=93.05 E-value=9.7 Score=37.37 Aligned_cols=79 Identities=8% Similarity=0.036 Sum_probs=65.5
Q ss_pred CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHH
Q psy875 185 NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD-LARQNKDDKLIRTVMRSMKKLYKKHDK-FTELEQIKTELKSLEE 262 (480)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~l~~ 262 (480)
+......-+..+|.++..+|+ -..|..+|..+++ ...+..+......+++.||-+|..+|. ..++..++.+|.+...
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~-~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGD-SEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 445556677889999999999 8999999998875 444566778888999999999999999 9999999999988654
Q ss_pred hh
Q psy875 263 KL 264 (480)
Q Consensus 263 ~~ 264 (480)
..
T Consensus 523 dY 524 (546)
T KOG3783|consen 523 DY 524 (546)
T ss_pred cc
Confidence 33
No 430
>KOG2114|consensus
Probab=92.90 E-value=5.4 Score=41.14 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q psy875 97 STHEKALDLARQNK-DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS 145 (480)
Q Consensus 97 ~~~~kAl~~~~~~~-~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~ 145 (480)
..|.-|+.+++... +...+..+....|...+..|+|++|...|-+.+..
T Consensus 348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34555666666554 34667788899999999999999999999987743
No 431
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=92.88 E-value=1.6 Score=48.60 Aligned_cols=186 Identities=10% Similarity=0.019 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHH---HHHHHHhcc-----
Q psy875 74 AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSAC---SELHTVLSS----- 145 (480)
Q Consensus 74 ~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~---~~~~~~l~~----- 145 (480)
.++..-.+|.. +...|.+..|+++|..|+...+..+|.-+++.++-.++.+..-.+-..--. .........
T Consensus 241 ~gR~~k~~gd~-~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 241 KGRLQKVLGDL-YLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhhH-HHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 34555667999 555599999999999999999999999999999888776655443211000 000000000
Q ss_pred -----------cccccH-------HHHHHHHHHHHH-hhccHHHHHHHHHHHHhhhhcC--cHHHHHHHHHHHHHHHHhC
Q psy875 146 -----------DLCKDL-------ASCYISLAQTYK-DNKQYNLAVDYFNKELRLHARN--FPEAVKTLGEIGDLYELQE 204 (480)
Q Consensus 146 -----------~~~~~~-------~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~l~~~~~~~~ 204 (480)
...|.. .....++..... -...+++|+.+|.++.....+. ..-...+...++.++....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 000000 000011111111 1235789999999987554442 2234566677777777777
Q ss_pred --------------------CchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 205 --------------------KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 205 --------------------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
. -.++..++.+++......-....+..++..+|.+|...|-..++--+.+++....
T Consensus 400 ~~~~l~~iV~~~~~~~~~~~~-~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 400 LSDNLDHIVKRPLTPTPNISS-RSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred cccchhhhhccccccccCCCC-HHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 6 7889999999988765445667888999999999999999999888888877654
No 432
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.75 E-value=6.4 Score=37.41 Aligned_cols=145 Identities=12% Similarity=0.093 Sum_probs=93.6
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccc------------c---------------ccHHHHHHHHHHHHHh
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL------------C---------------KDLASCYISLAQTYKD 164 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~------------~---------------~~~~~~~~~la~~y~~ 164 (480)
.+....++..++.++..+|+++.|.++.++++-... + .....+.........+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 355667888999999999999999999887762211 0 2234566667788889
Q ss_pred hccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHH
Q psy875 165 NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD-DKLIRTVMRSMKKLYKK 243 (480)
Q Consensus 165 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~ 243 (480)
.|-+..|+++.+-.+.+-...+|. .+.+.|=....+.++ |+--++.++...... ..+ ...........+-++..
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~--g~ll~ID~~ALrs~~-y~~Li~~~~~~~~~~--~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPL--GVLLFIDYYALRSRQ-YQWLIDFSESPLAKC--YRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcc--hhHHHHHHHHHhcCC-HHHHHHHHHhHhhhh--hhhhhhhCccHHHHHHHHHHH
Confidence 999999999999998885553332 233444444555666 776666666544320 000 00112344455666666
Q ss_pred cCCh---------------HHHHHHHHHHHHHH
Q psy875 244 HDKF---------------TELEQIKTELKSLE 261 (480)
Q Consensus 244 ~g~~---------------~~A~~~~~~~~~l~ 261 (480)
.++. ++|...++++....
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 7666 78888888776543
No 433
>KOG4322|consensus
Probab=92.73 E-value=9.3 Score=36.34 Aligned_cols=171 Identities=12% Similarity=0.003 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
.-....+..+.++....++..|-....+..-.. ..+..........++.+ +...+..-.+..+.-.++....+...+
T Consensus 271 ~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~-~~~g~~a~l~lplaL~~~~~~sey~ld 349 (482)
T KOG4322|consen 271 QSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEA-RESGDTACLNLPLALMFEFKRSEYSLD 349 (482)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HhcCCCchhhHHHHHHHHHHHHHhccc
Confidence 344556668888888888888888888765442 23334456677777888 555477777888887777776666666
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc--------c---cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC--------K---DLASCYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--------~---~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
...+.+-.+++..+.-+|..++|+..+..+...... . -.+.++..-+..+ ...+.+.+..++++|-.+
T Consensus 350 yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~~~ 428 (482)
T KOG4322|consen 350 YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQSI 428 (482)
T ss_pred hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHHHH
Confidence 667777789999999999999999999866532111 0 0122232233333 556788888888888777
Q ss_pred hhc--CcHHHHHHHHHHHHHHHHhCCchH
Q psy875 182 HAR--NFPEAVKTLGEIGDLYELQEKPFE 208 (480)
Q Consensus 182 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 208 (480)
... -+.....+.+-.+..|-..|+ -+
T Consensus 429 f~kL~~he~ildv~yf~A~~yn~lGd-~~ 456 (482)
T KOG4322|consen 429 FYKLGCHEKILDVTYFSAYQYNHLGD-SP 456 (482)
T ss_pred HHHccchHHHHHHHHHHHHHHHhhcC-ch
Confidence 665 455677888888999999988 54
No 434
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.62 E-value=0.55 Score=30.28 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRL 66 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 66 (480)
.+++.+|..+++.|+|++|.++.+.++++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 46788899999999999999999999998
No 435
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.59 E-value=0.47 Score=30.59 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 154 CYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 154 ~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
+++.+|..+.++|+|++|..+.+..+++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3455566666666666666666666665
No 436
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.57 E-value=2 Score=32.42 Aligned_cols=41 Identities=10% Similarity=-0.028 Sum_probs=29.0
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHH
Q psy875 43 LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL 84 (480)
Q Consensus 43 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~ 84 (480)
++.-++.+|++-+|++..+..+.. .++....+..+..-|.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~-h~~~~~~~~lh~~QG~i 42 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR-HGEDESSWLLHRLQGTI 42 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH-ccCCCchHHHHHHHhHH
Confidence 456788999999999999999888 44443333444445666
No 437
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.20 E-value=0.25 Score=29.28 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=14.5
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRL 66 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 66 (480)
+|..||.+....++|++|++-|.+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4444555555555555555555555544
No 438
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.11 E-value=1.2 Score=37.65 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccc-cH-HHHHHHHHHHHHhhccHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-DL-ASCYISLAQTYKDNKQYNLAV 172 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~-~~-~~~~~~la~~y~~~~~~~~A~ 172 (480)
.....+|..|. ..+.++|+..+.+++...... .+ ..++..|+.+|..+|++++|-
T Consensus 142 elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 142 ELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34455666555 556777777777777655443 22 566777777777777777764
No 439
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.97 E-value=9.6 Score=37.36 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=25.1
Q ss_pred HHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy875 125 LYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKE 178 (480)
Q Consensus 125 ~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~a 178 (480)
+..+.|+++.|.+..++. .....|..||.....+|+++-|.++|+++
T Consensus 327 LAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHCT-HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 344556666555444321 11235666666666666666666666654
No 440
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=91.63 E-value=2.8 Score=32.16 Aligned_cols=70 Identities=6% Similarity=-0.043 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCc---------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875 193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDD---------KLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
+..+|+..++.++ +-.++-.|++|+.+.++.... ........+||.++..+|+.+-.++|++-+.+.--.
T Consensus 4 htllAd~a~~~~~-~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 4 HTLLADQAFKEAD-PLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHHHhhccc-HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 4456777777777 777888888888777665210 112234569999999999999999999988764433
No 441
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=91.59 E-value=12 Score=42.13 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHH
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIG 82 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg 82 (480)
+..++..-.+|..|...|.+.+|++.|.+|++.+ .++.-+.+.++-.++
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~ 289 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIA 289 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHH
Confidence 4567888899999999999999999999999986 444445555554443
No 442
>KOG4507|consensus
Probab=91.56 E-value=3.4 Score=40.73 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHH
Q psy875 76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY 155 (480)
Q Consensus 76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (480)
..+.+++..|+...|+.-+|..++..|+........ -.+...+|.+..+.|...+|--.+..|+...+ ....-+
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k----di~lLSlaTiL~RaG~sadA~iILhAA~~dA~--~~t~n~ 286 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK----DIALLSLATVLHRAGFSADAAVILHAALDDAD--FFTSNY 286 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc----cchhhhHHHHHHHcccccchhheeehhccCCc--cccccc
Confidence 345677888888889999999999999988765322 23566899999999999999888877775443 333448
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 156 ISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 156 ~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
+.+|.+|..+++|...+.+|..+.+..+.
T Consensus 287 y~l~~i~aml~~~N~S~~~ydha~k~~p~ 315 (886)
T KOG4507|consen 287 YTLGNIYAMLGEYNHSVLCYDHALQARPG 315 (886)
T ss_pred eeHHHHHHHHhhhhhhhhhhhhhhccCcc
Confidence 88999999999999999999988877433
No 443
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=91.34 E-value=2.2 Score=36.54 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=61.9
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCCCCCCC----CCCChHHHHHHH--cCCHHHHHHHHHcC-CCCCCccC-CCCCCcH
Q psy875 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQD----SAGWLPLHEAAN--HGHTDIVQALVSAG-ADPNDKVQ-DSAGWLP 456 (480)
Q Consensus 385 g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~----~~g~t~l~~a~~--~~~~~~~~~Ll~~g-~~~~~~~~-~~~g~tp 456 (480)
-.+++-++...+..+++-+|+.+- .....| ..+.--+-++.. .....++++++.+| +++|.+.+ -..|.|-
T Consensus 179 A~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM 257 (284)
T PF06128_consen 179 AHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM 257 (284)
T ss_pred HHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence 456777777777888888888751 111111 112222333333 23467889999987 45564332 2469999
Q ss_pred HHHHHHcCCHHHHHHHHHcCC
Q psy875 457 LHEAANHGHTDIVQALVSAGA 477 (480)
Q Consensus 457 l~~A~~~~~~~~~~~Ll~~ga 477 (480)
|.-|...++.+|+.+|+++||
T Consensus 258 LDNA~Ky~~~emi~~Llk~GA 278 (284)
T PF06128_consen 258 LDNAMKYKNSEMIAFLLKYGA 278 (284)
T ss_pred HHhHHhcCcHHHHHHHHHcCc
Confidence 999999999999999999998
No 444
>KOG0985|consensus
Probab=91.29 E-value=11 Score=39.92 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=12.7
Q ss_pred HHHHHhccccHHHHHHHHHH
Q psy875 43 LAQTYKDNKQYNLAVDYFNK 62 (480)
Q Consensus 43 lg~~~~~~~~~~~A~~~~~~ 62 (480)
+|.+....+-|++|...|.+
T Consensus 1054 ia~iai~~~LyEEAF~ifkk 1073 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKK 1073 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHH
Confidence 45556666667777766654
No 445
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.97 E-value=12 Score=33.90 Aligned_cols=154 Identities=13% Similarity=0.119 Sum_probs=89.4
Q ss_pred HhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc
Q psy875 87 LQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK 166 (480)
Q Consensus 87 ~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~ 166 (480)
...|++.+|...+..++...... ..+...++.+|...|+.+.|...+...-.......... ...--..+.+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~qaa 217 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPEN------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQAA 217 (304)
T ss_pred hhccchhhHHHHHHHHHHhCccc------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHHHh
Confidence 44488899999999888876654 44566788999999999998888875332222111111 000011111222
Q ss_pred cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Q psy875 167 QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK 246 (480)
Q Consensus 167 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (480)
...+.... ++.+.. .|.....-+.+|..+...|+ ++.|.+.+-..++.-+...+. .+-..|-.++...|.
T Consensus 218 ~~~~~~~l-~~~~aa----dPdd~~aa~~lA~~~~~~g~-~e~Ale~Ll~~l~~d~~~~d~----~~Rk~lle~f~~~g~ 287 (304)
T COG3118 218 ATPEIQDL-QRRLAA----DPDDVEAALALADQLHLVGR-NEAALEHLLALLRRDRGFEDG----EARKTLLELFEAFGP 287 (304)
T ss_pred cCCCHHHH-HHHHHh----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcccccCc----HHHHHHHHHHHhcCC
Confidence 22211111 111111 34445677889999999999 999999887766553333333 344556677777774
Q ss_pred hH-HHHHHHHHH
Q psy875 247 FT-ELEQIKTEL 257 (480)
Q Consensus 247 ~~-~A~~~~~~~ 257 (480)
-+ .+..+.++.
T Consensus 288 ~Dp~~~~~RRkL 299 (304)
T COG3118 288 ADPLVLAYRRKL 299 (304)
T ss_pred CCHHHHHHHHHH
Confidence 43 445554443
No 446
>KOG1538|consensus
Probab=90.90 E-value=19 Score=36.34 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=44.3
Q ss_pred HHHHHHHhccccHHHHHHHHHHH------HHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 41 ISLAQTYKDNKQYNLAVDYFNKE------LRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 41 ~~lg~~~~~~~~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
..+|.++...|.|.+|-+.|.+. ++++ .-.-++..++- +...|.-++-....+|--+.+...+.++
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmy------TDlRMFD~aQE-~~~~g~~~eKKmL~RKRA~WAr~~kePk- 707 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMY------TDLRMFDYAQE-FLGSGDPKEKKMLIRKRADWARNIKEPK- 707 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHH------HHHHHHHHHHH-HhhcCChHHHHHHHHHHHHHhhhcCCcH-
Confidence 45677777788888888877653 2220 01112333444 2222544444444444444444443332
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSEL 139 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~ 139 (480)
.-+.+....|+..+|+...
T Consensus 708 ------aAAEmLiSaGe~~KAi~i~ 726 (1081)
T KOG1538|consen 708 ------AAAEMLISAGEHVKAIEIC 726 (1081)
T ss_pred ------HHHHHhhcccchhhhhhhh
Confidence 2345666777777777654
No 447
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.82 E-value=5.3 Score=30.24 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=54.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcccccccH-HHHHHHHHHHHHhh----ccHHH-------HHHHHHHHHhhhhcCcHHH
Q psy875 122 IKKLYKKHDNLDSACSELHTVLSSDLCKDL-ASCYISLAQTYKDN----KQYNL-------AVDYFNKELRLHARNFPEA 189 (480)
Q Consensus 122 l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~la~~y~~~----~~~~~-------A~~~~~~al~~~~~~~~~~ 189 (480)
++.-++..|++-+|++..+..+....+... ...+..-|.++.++ .+.+- |++.|.++..+ .|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L----sp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL----SPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc----ChhH
Confidence 356678889999999999887765544332 24444556666544 33333 44444454444 4555
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
+..++.+|.-+-...- |+++....++++.+
T Consensus 78 A~~L~~la~~l~s~~~-Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 78 AHSLFELASQLGSVKY-YKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHhhhHHH-HHHHHHHHHHHhcc
Confidence 6666666665444444 56666655555543
No 448
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=13 Score=33.45 Aligned_cols=108 Identities=6% Similarity=-0.065 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH-
Q psy875 73 EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL- 151 (480)
Q Consensus 73 ~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~- 151 (480)
....++.++|.. |.+.++.+.+.++..+.++-+...+-.-.+..+-..+|.+|..+.=.++.++.....++..-+.+.
T Consensus 113 e~~ea~~n~aey-Y~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 113 EGSEADRNIAEY-YCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred HHHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 345666777776 344477777777776666555444444444444556666666655555555544444332222111
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
...-...|.......+|.+|-..+-..+..
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 111222344445555666666666555544
No 449
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.25 E-value=0.34 Score=25.84 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhccHHHHHHHH
Q psy875 155 YISLAQTYKDNKQYNLAVDYF 175 (480)
Q Consensus 155 ~~~la~~y~~~~~~~~A~~~~ 175 (480)
...+|.++..+|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344444555555555544443
No 450
>KOG3807|consensus
Probab=90.13 E-value=9.8 Score=34.83 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=41.7
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Q psy875 40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLA 106 (480)
Q Consensus 40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~ 106 (480)
-+.+-...++..+...-++.-..|+++ ++.-+.+|..++.- .. .-..+|.+.+++|++..
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeI----N~eCA~AyvLLAEE-Ea--~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEI----NNECATAYVLLAEE-EA--TTIVDAERLFKQALKAG 246 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhc----CchhhhHHHhhhhh-hh--hhHHHHHHHHHHHHHHH
Confidence 344445566777888888888888888 67777777777654 22 24667788888888654
No 451
>KOG2114|consensus
Probab=89.91 E-value=20 Score=37.20 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=34.7
Q ss_pred hhhhhhhh-HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q psy875 24 LHTVLSSD-LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL 66 (480)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 66 (480)
+.++.+.. ....++.++..-|...+.+|++++|+..|-+++..
T Consensus 354 i~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 354 INLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 55665544 44567788888999999999999999999999876
No 452
>KOG1497|consensus
Probab=89.01 E-value=18 Score=33.06 Aligned_cols=106 Identities=17% Similarity=0.170 Sum_probs=71.3
Q ss_pred ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc----CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc
Q psy875 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR----NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQN 224 (480)
Q Consensus 149 ~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~ 224 (480)
...+.+...||.+|.+.++|..|-..+. ++..-.+ +.......+..+|++|.+.++ ..+|..+..++--+.-..
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d-~veae~~inRaSil~a~~ 177 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDD-KVEAEAYINRASILQAES 177 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHhhhcc
Confidence 4557778889999999999988876652 2222111 234456677889999999998 888888888775443334
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875 225 KDDKLIRTVMRSMKKLYKKHDKFTELEQIKTE 256 (480)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 256 (480)
.+.......-.--+++.-..++|-+|-+-|-+
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYye 209 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYE 209 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555567777778887666544443
No 453
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.99 E-value=21 Score=33.74 Aligned_cols=199 Identities=10% Similarity=-0.012 Sum_probs=107.8
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHH
Q psy875 42 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRS 121 (480)
Q Consensus 42 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~ 121 (480)
.-|.+-.-.|+-..|.+.-.++-++...+.+ ..++..-++.-... |+++.|.+-|+..+. ++..-..-+..
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqe--pLIhlLeAQaal~e-G~~~~Ar~kfeAMl~------dPEtRllGLRg 159 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQE--PLIHLLEAQAALLE-GDYEDARKKFEAMLD------DPETRLLGLRG 159 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccch--HHHHHHHHHHHHhc-CchHHHHHHHHHHhc------ChHHHHHhHHH
Confidence 3455555677888888887777765322222 22223335553344 888888877766553 22221222333
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh--hhcCcHHHHHHHHHHHHH
Q psy875 122 IKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL--HARNFPEAVKTLGEIGDL 199 (480)
Q Consensus 122 l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~ 199 (480)
|-.--..+|..+-|..|-+.+....+ .+..+....-...+..|+|+.|++..+..... ...+.-+...+-..-+..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap--~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAP--QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhcc--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 33344567888888888887765553 33344444445556778888888888765543 222222222233333333
Q ss_pred HHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 200 YELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 200 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
.....-|...|.....+++++ .+...-.-..-+..+.+.|+..++-..++.+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~KL------~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 238 MSLLDADPASARDDALEANKL------APDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHhcCChHHHHHHHHHHhhc------CCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 333333356666666666655 2222223333455566666666665555444
No 454
>KOG4521|consensus
Probab=88.91 E-value=25 Score=37.99 Aligned_cols=189 Identities=9% Similarity=-0.003 Sum_probs=102.5
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHH-HHHHH--HHHHHHhhcc----HHHHHHHHHHHHHhhhcCCC
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK-TLGEI--GDLYELQEKS----FEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~l--g~~y~~~~~~----~~~A~~~~~kAl~~~~~~~~ 111 (480)
..+.+|..|...|...+|+.+|.+|..-..... -.-. .+... +.. -.+ |+ -..|..||.+++++....+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~s-v~d-G~t~s~e~t~lhYYlkv~rlle~hn~ 998 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFS-VAD-GKTPSEELTALHYYLKVVRLLEEHNH 998 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCc-hhc-CCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 457889999999999999999999987621111 1101 11100 000 011 21 23367788888877665433
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC--KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA 189 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 189 (480)
.+.++..-.+|+..-+. +..+.++..+-+-..++|.+-+|.+.+-+ . .+....
T Consensus 999 --------------------~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---n--pdserr 1053 (1480)
T KOG4521|consen 999 --------------------AEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---N--PDSERR 1053 (1480)
T ss_pred --------------------HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc---C--CcHHHH
Confidence 23333333344433222 55566677777777788888777655422 1 112233
Q ss_pred HHHHHHHHHHHHHhCCchHHHHH-----HHHHHHH---HHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875 190 VKTLGEIGDLYELQEKPFELVVS-----THEKALD---LARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTE 256 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~-----~~~~al~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 256 (480)
-.++..+-.+.++.|+ .+.-.+ .-++... -......+.+....|..|--++...+|+.+|-.+.-+
T Consensus 1054 rdcLRqlvivLfecg~-l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1054 RDCLRQLVIVLFECGE-LEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHHHHHHHHHhccc-hHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 4455566666666666 432111 0011111 1111234455566777788888889999887655433
No 455
>KOG3364|consensus
Probab=88.73 E-value=4.6 Score=31.73 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcC---ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875 116 RTVMRSIKKLYKKHD---NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH 182 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~ 182 (480)
....+++++...... +..+.+..++..+........-.+.+.||.-+++.++|++|+.|.+..++.-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 345678888887765 5667888888888622223335677889999999999999999999988873
No 456
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.67 E-value=13 Score=30.86 Aligned_cols=143 Identities=11% Similarity=0.019 Sum_probs=94.7
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH
Q psy875 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN 169 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~ 169 (480)
+.-.++-..|..||+++. .++.++|+.-|...-...-...-..+....|.+..+.|+..
T Consensus 53 s~as~sgd~flaAL~lA~---------------------~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta 111 (221)
T COG4649 53 SRASKSGDAFLAALKLAQ---------------------ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTA 111 (221)
T ss_pred cccccchHHHHHHHHHHH---------------------cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHH
Confidence 555555666666666654 35566777777655433333333566788899999999999
Q ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH
Q psy875 170 LAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE 249 (480)
Q Consensus 170 ~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (480)
.|+.+|.++-.-..-.....-.+...-+.++...|- |++.....+-- .....+....+...|+..-.+.|++..
T Consensus 112 ~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs-y~dV~srvepL-----a~d~n~mR~sArEALglAa~kagd~a~ 185 (221)
T COG4649 112 AAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS-YDDVSSRVEPL-----AGDGNPMRHSAREALGLAAYKAGDFAK 185 (221)
T ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc-HHHHHHHhhhc-----cCCCChhHHHHHHHHhHHHHhccchHH
Confidence 999999986544222222223444556677777888 77755433221 123455666777789999999999999
Q ss_pred HHHHHHHHHH
Q psy875 250 LEQIKTELKS 259 (480)
Q Consensus 250 A~~~~~~~~~ 259 (480)
|..+++....
T Consensus 186 A~~~F~qia~ 195 (221)
T COG4649 186 AKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHc
Confidence 9999987654
No 457
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.56 E-value=1.5 Score=26.98 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=18.1
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHh
Q psy875 156 ISLAQTYKDNKQYNLAVDYFNKELR 180 (480)
Q Consensus 156 ~~la~~y~~~~~~~~A~~~~~~al~ 180 (480)
..||.+|.++|+++.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4577777777777777777777663
No 458
>KOG4014|consensus
Probab=88.47 E-value=13 Score=30.93 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHhcccccccHHHHHHHH----
Q psy875 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD-------NLDSACSELHTVLSSDLCKDLASCYISL---- 158 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~-------~~~~A~~~~~~~l~~~~~~~~~~~~~~l---- 158 (480)
++...|++++..|-.. ....+..++|.+...-. +.++|.+|+.++...... .+.++|
T Consensus 87 ~~l~~a~r~~~~aC~~--------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~----~aCf~LS~m~ 154 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACDA--------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDG----EACFLLSTMY 154 (248)
T ss_pred cCHHHHHHHHHHHhcc--------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCc----hHHHHHHHHH
Confidence 6788888888888763 12445566777665432 478999999988754432 222222
Q ss_pred --------------------HHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC---CchHHHHHHHH
Q psy875 159 --------------------AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE---KPFELVVSTHE 215 (480)
Q Consensus 159 --------------------a~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~A~~~~~ 215 (480)
+..+.-.++.++|.++.-+|-++ ..+.+..|+++.|..-. ++-++|..+-.
T Consensus 155 ~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~ 228 (248)
T KOG4014|consen 155 MGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL------DIPQACANVSRMYKLGDGVPKDEDQAEKYKD 228 (248)
T ss_pred hccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc------CChHHHhhHHHHHHccCCCCccHHHHHHHHH
Confidence 23334446778888887777665 23455667777775421 22678888888
Q ss_pred HHHHHHHH
Q psy875 216 KALDLARQ 223 (480)
Q Consensus 216 ~al~~~~~ 223 (480)
+|.++.++
T Consensus 229 rA~e~~~e 236 (248)
T KOG4014|consen 229 RAKEIMEE 236 (248)
T ss_pred HHHHHHHH
Confidence 88876543
No 459
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.14 E-value=19 Score=32.38 Aligned_cols=130 Identities=12% Similarity=0.139 Sum_probs=87.3
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhh
Q psy875 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDN 165 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~ 165 (480)
+.-++-++-+.++++-.+..+.....+.+..++|..|.+.++.+.+.+.+.+.+..... -++..+-..||.+|..+
T Consensus 89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH
Confidence 44566677788888776666666778899999999999999999999998866643322 34456677889999888
Q ss_pred ccHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875 166 KQYNLAVDYFNKELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 166 ~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~ 222 (480)
.=.++.++..+-.++--.+ +......+|. |.......+ +.+|...+-..+..+.
T Consensus 169 ~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~--Gi~~m~~Rn-FkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 169 KVVEESLEVADDIIEKGGDWERRNRYKVYK--GIFKMMRRN-FKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHHHhCCCHHhhhhHHHHH--HHHHHHHHh-hHHHHHHHHHHhcccc
Confidence 7666666655555443222 2333344443 333344455 7888777777665543
No 460
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=87.75 E-value=5.6 Score=30.58 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc---------hHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy875 79 GEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD---------KLIRTVMRSIKKLYKKHDNLDSACSELH 140 (480)
Q Consensus 79 ~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~---------~~~~~~~~~l~~~y~~~~~~~~A~~~~~ 140 (480)
..+|.. ..+.+++-.++-+|++|+.+..+.... ........|||..++.+|+.+=.++|++
T Consensus 5 tllAd~-a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLq 74 (140)
T PF10952_consen 5 TLLADQ-AFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQ 74 (140)
T ss_pred HHHHHH-HhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHH
Confidence 455666 444478888888888888766554211 1112234577777777777777777777
No 461
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.68 E-value=0.6 Score=24.87 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=15.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFN 61 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~ 61 (480)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777777777777776654
No 462
>PRK10941 hypothetical protein; Provisional
Probab=87.59 E-value=7.3 Score=35.22 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875 30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN 109 (480)
Q Consensus 30 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~ 109 (480)
.+...-+.+...++-.+|...++++.|+.+.+..+.+ .|+...-+...|.+ +.++|.+..|..-++.-++..+..
T Consensus 174 a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l----~P~dp~e~RDRGll-~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 174 ADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQF----DPEDPYEIRDRGLI-YAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh----CCCCHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHhCCCc
Confidence 3344567888999999999999999999999999999 55555556678999 667799999999999988887755
Q ss_pred CCc
Q psy875 110 KDD 112 (480)
Q Consensus 110 ~~~ 112 (480)
++.
T Consensus 249 p~a 251 (269)
T PRK10941 249 PIS 251 (269)
T ss_pred hhH
Confidence 443
No 463
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=87.37 E-value=12 Score=29.30 Aligned_cols=82 Identities=10% Similarity=0.119 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhhhcCC---CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccH
Q psy875 92 FEIVQSTHEKALDLARQNK---DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQY 168 (480)
Q Consensus 92 ~~~A~~~~~kAl~~~~~~~---~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~ 168 (480)
-..-...+++++..+.... ++.....++...+. .-. .+.+.|+......-....+..|...|..+...|++
T Consensus 42 ~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~----~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~ 115 (126)
T PF08311_consen 42 QSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD----LSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNF 115 (126)
T ss_dssp CHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----TBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-H
T ss_pred hhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----Hcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCH
Confidence 3444567777776664432 23333333333333 222 77777776655455566778888899999999999
Q ss_pred HHHHHHHHHHH
Q psy875 169 NLAVDYFNKEL 179 (480)
Q Consensus 169 ~~A~~~~~~al 179 (480)
++|.+.|++++
T Consensus 116 ~~A~~I~~~Gi 126 (126)
T PF08311_consen 116 KKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhC
Confidence 99999888765
No 464
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=87.30 E-value=1.4 Score=31.02 Aligned_cols=48 Identities=15% Similarity=0.035 Sum_probs=38.9
Q ss_pred chHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhc
Q psy875 337 ESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ 407 (480)
Q Consensus 337 ~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~ 407 (480)
...+..|..+|+.++++.+++.+ .+ ...++..|+...+.+++++|++.
T Consensus 7 ~~tl~~Ai~GGN~eII~~c~~~~-~~----------------------~~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 7 KKTLEYAIIGGNFEIINICLKKN-KP----------------------DNDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh-cc----------------------HHHHHHHHHHHhhHHHHHHHHHh
Confidence 45677899999999999998765 22 23458999999999999999987
No 465
>KOG1914|consensus
Probab=87.29 E-value=32 Score=33.99 Aligned_cols=202 Identities=10% Similarity=0.087 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhcccc-------HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHhhh
Q psy875 38 SCYISLAQTYKDNKQ-------YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE---KSFEIVQSTHEKALDLAR 107 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~---~~~~~A~~~~~kAl~~~~ 107 (480)
......+.++...|+ -+++.++|+++++...+. ....|+.++.. .... ..++....++++++.+..
T Consensus 287 ~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~---~~~Ly~~~a~~-eE~~~~~n~~~~~~~~~~~ll~~~~ 362 (656)
T KOG1914|consen 287 MYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE---NKLLYFALADY-EESRYDDNKEKKVHEIYNKLLKIED 362 (656)
T ss_pred HHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh-HHHhcccchhhhhHHHHHHHHhhhc
Confidence 333444445555554 456666666666552111 12222333222 2111 236677778888886654
Q ss_pred cCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHH-HHHHhhccHHHHHHHHHHHHhhhhcCc
Q psy875 108 QNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA-QTYKDNKQYNLAVDYFNKELRLHARNF 186 (480)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la-~~y~~~~~~~~A~~~~~~al~~~~~~~ 186 (480)
... ..++.++-..-.+..-...|...|.++-+....+. .++..-| .-|...+++.-|...|+-.++...+.+
T Consensus 363 ~~~-----tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h--hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p 435 (656)
T KOG1914|consen 363 IDL-----TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH--HVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSP 435 (656)
T ss_pred cCC-----ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCh
Confidence 322 22344445555566667788888888875544332 3333333 235567999999999999998876654
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875 187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK 258 (480)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 258 (480)
... .. ....+...++ -..|...|++++.. .-.......++..+-.+-..-|+...+.+.-++-.
T Consensus 436 ~yv-~~---YldfL~~lNd-d~N~R~LFEr~l~s---~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 436 EYV-LK---YLDFLSHLND-DNNARALFERVLTS---VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHH-HH---HHHHHHHhCc-chhHHHHHHHHHhc---cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 322 22 2344556777 67888899888764 22334445677777777788888877776665543
No 466
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=86.73 E-value=9.2 Score=37.73 Aligned_cols=71 Identities=11% Similarity=0.192 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy875 168 YNLAVDYFNKELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKK 239 (480)
Q Consensus 168 ~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 239 (480)
-..+++.|.+|+...+. -......-|..+|..|++.++ |.+|+.++-+|-...+..+....-.++|..+-+
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~-~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfle 366 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKR-YREALRSWAEAADVIRKYNYSREDEEIYKEFLE 366 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHH-HHHHHHHHHHHHHHHHHcccCccHHHHHHHHHH
Confidence 34567778887776554 223345567778888888888 999999888888777776655555555554443
No 467
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.61 E-value=18 Score=32.78 Aligned_cols=125 Identities=12% Similarity=0.011 Sum_probs=76.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHH-HhhhhcCcHHHHHHHHHHHHH
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKE-LRLHARNFPEAVKTLGEIGDL 199 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~l~~~ 199 (480)
..+.-....|++.+|...|..++...+.. ..+...++.+|...|+.+.|...+... .+. ..........--..
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~--~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~----~~~~~~~l~a~i~l 212 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPEN--SEAKLLLAECLLAAGDVEAAQAILAALPLQA----QDKAAHGLQAQIEL 212 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCccc--chHHHHHHHHHHHcCChHHHHHHHHhCcccc----hhhHHHHHHHHHHH
Confidence 44566778899999999999998776554 467788999999999999998877552 111 11111111111112
Q ss_pred HHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 200 YELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 200 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
+.+... ..+... ++ ++....+.-..+-..++..+...|+.+.|.+.+-...+
T Consensus 213 l~qaa~-~~~~~~-l~------~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 213 LEQAAA-TPEIQD-LQ------RRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHhc-CCCHHH-HH------HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222222 111111 11 11122344455667899999999999999988765544
No 468
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.19 E-value=4.8 Score=38.54 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccc------cccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDL------CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH 182 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~ 182 (480)
+...|..++.-+|+|..|++.++-.--... .+-....++.+|-+|+.+++|.+|+..|...+-..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi 194 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYI 194 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777889999999999999873211111 12225678889999999999999999999887653
No 469
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.93 E-value=19 Score=33.18 Aligned_cols=50 Identities=8% Similarity=0.015 Sum_probs=26.6
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC
Q psy875 59 YFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK 110 (480)
Q Consensus 59 ~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~ 110 (480)
.|+++.+. .+........-.+-|.+|+.. ++|.+....+..|-...++..
T Consensus 43 ~y~Q~~q~-~kk~~~~il~~L~~Gl~a~~~-~dya~S~~~ldAae~~~Kqqq 92 (449)
T COG3014 43 AYEQSKQF-TKKKKNALLWDLQNGLSALYA-RDYATSLGVLDAAEQRFKQQQ 92 (449)
T ss_pred HHHHHHHh-hhhhhHHHHHhhhhhHHHHHh-hhHHHhhhHHHHHHHHHhhhh
Confidence 44555554 222233222223347775555 788888777766665554433
No 470
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=85.77 E-value=12 Score=35.60 Aligned_cols=96 Identities=13% Similarity=0.111 Sum_probs=66.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhccccc------------ccH----HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCc
Q psy875 123 KKLYKKHDNLDSACSELHTVLSSDLC------------KDL----ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF 186 (480)
Q Consensus 123 ~~~y~~~~~~~~A~~~~~~~l~~~~~------------~~~----~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~ 186 (480)
|..++++++|..|.--|..+|+...+ .++ ..+-..|..+|..+++.+-|+.+..+++-+ .
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l----n 258 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL----N 258 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc----C
Confidence 44455556666665555544432211 111 334556899999999999999999999988 5
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875 187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ 223 (480)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 223 (480)
|.....+..-|.++..+.+ |.+|...+.-|.-++--
T Consensus 259 P~~frnHLrqAavfR~LeR-y~eAarSamia~ymywl 294 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFRRLER-YSEAARSAMIADYMYWL 294 (569)
T ss_pred cchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 6666677788888988999 99988877666554433
No 471
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.59 E-value=27 Score=31.48 Aligned_cols=149 Identities=11% Similarity=-0.023 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN 109 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~ 109 (480)
-+.+....++.=+....+.|++..|-+...-.++.+ ........ ...++..+....-..-.+-....++|++..+..
T Consensus 5 ky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~ 83 (260)
T PF04190_consen 5 KYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPEEPERKKFIKAAIKWSKFG 83 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHccC
Confidence 455667778888888888999998888777777765 22222221 224555552222112223457778888877545
Q ss_pred CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHH-----hcc---------cccccHHHHHH-HHHHHHHhhccHHHHHHH
Q psy875 110 KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTV-----LSS---------DLCKDLASCYI-SLAQTYKDNKQYNLAVDY 174 (480)
Q Consensus 110 ~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~-----l~~---------~~~~~~~~~~~-~la~~y~~~~~~~~A~~~ 174 (480)
..+..-...+..+|..|.+.|++.+|..+|-.. ... ...+.-...+. ..-.-|...++...|...
T Consensus 84 ~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~ 163 (260)
T PF04190_consen 84 SYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANEL 163 (260)
T ss_dssp S-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHH
Confidence 555666778899999999999999999998611 100 00011122232 334556777888888887
Q ss_pred HHHHHhh
Q psy875 175 FNKELRL 181 (480)
Q Consensus 175 ~~~al~~ 181 (480)
+..-.+.
T Consensus 164 ~~~f~~~ 170 (260)
T PF04190_consen 164 FDTFTSK 170 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665443
No 472
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.05 E-value=5.4 Score=38.19 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhh-----hhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC
Q psy875 153 SCYISLAQTYKDNKQYNLAVDYFNKELRL-----HARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK 225 (480)
Q Consensus 153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 225 (480)
.+...|.+++.-+|+|..|++.++- +++ ....+.-...+++.+|-+|.-+++ |.+|+..|...+-...+..
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrR-Y~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRR-YADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 3556678999999999999988754 222 223456667889999999999999 9999999999987655443
No 473
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.00 E-value=11 Score=26.38 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=31.6
Q ss_pred HhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875 202 LQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLD 265 (480)
Q Consensus 202 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~ 265 (480)
..|+ |++|+..|..|++.+....++.....+...+. .-|.+++.++..+...+.
T Consensus 18 ~~gn-y~eA~~lY~~ale~~~~ekn~~~k~~i~~K~~---------~~a~~yl~RAE~Lk~~l~ 71 (75)
T cd02680 18 EKGN-AEEAIELYTEAVELCINTSNETMDQALQTKLK---------QLARQALDRAEALKESMS 71 (75)
T ss_pred Hhhh-HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH---------HHHHHHHHHHHHHHHHhc
Confidence 4567 88999999888887665433322222222211 124567777777776654
No 474
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=84.98 E-value=37 Score=32.47 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHh---------CCchHHHHHHHHHHHHHHHHcCC
Q psy875 188 EAVKTLGEIGDLYELQ---------EKPFELVVSTHEKALDLARQNKD 226 (480)
Q Consensus 188 ~~~~~~~~l~~~~~~~---------~~~~~~A~~~~~~al~~~~~~~~ 226 (480)
....+++.+|.+|.+. +. ...++.+|+..++...+.+.
T Consensus 298 ~~l~a~f~~arl~~K~~~~~~~~~~~~-l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 298 PYLYAYFHIARLYSKLITSDPKEQLEN-LEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHHHHHHHHHHHccccCCChHHHHHH-HHHHHHHHHHHHHHHHhChh
Confidence 4556666666666544 45 66677777776666665554
No 475
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=84.90 E-value=27 Score=30.92 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHH
Q psy875 208 ELVVSTHEKALDLARQ--NKDDKLIRTVMRSMKKLY-KKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 208 ~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~l~ 261 (480)
++|...|++|+.++.. .+..|.......+.+.+| .-+|+.++|.+..+++..-.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 7899999999999988 344555555555555555 67999999999999887644
No 476
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=84.62 E-value=8.8 Score=33.03 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=61.1
Q ss_pred HHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHc--CCHHHHHHHHhcC-CCCCCC-
Q psy875 339 ITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAAR--GNLTLVQSLLKQG-HPVKVQ- 414 (480)
Q Consensus 339 ~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~--~~~~~~~~ll~~g-~~~~~~- 414 (480)
.+..+...+..+++-+|+.+- ++..++-. .-+.+.--+.++... .+..++++++.+| +++|.+
T Consensus 182 Am~~si~~~K~dva~~lls~f-~ft~~dv~------------~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F 248 (284)
T PF06128_consen 182 AMWLSIGNAKEDVALYLLSKF-NFTKQDVA------------SMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKF 248 (284)
T ss_pred HHHHHhcccHHHHHHHHHhhc-ceecchhh------------hcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhh
Confidence 444455556667888887652 22211110 011133345555543 4578999999998 467643
Q ss_pred --CCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 415 --DSAGWLPLHEAANHGHTDIVQALVSAGADP 444 (480)
Q Consensus 415 --~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~ 444 (480)
-..|.|-|.-|...+..+++..|+++|+-.
T Consensus 249 ~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 249 QKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred hccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence 457999999999999999999999999843
No 477
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.14 E-value=2.5 Score=26.00 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcccc
Q psy875 120 RSIKKLYKKHDNLDSACSELHTVLSSDL 147 (480)
Q Consensus 120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~ 147 (480)
..++..|..+|+++.|.+.+++.+...+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4789999999999999999999885443
No 478
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.91 E-value=9.1 Score=34.46 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHhhccCC
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS-LEEKLDLNS 268 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-l~~~~~~~~ 268 (480)
...+...+..|...|. +.+|+.+.++++.+ .+.....+..|..++..+|+--+|...|+++.+ +...++..-
T Consensus 279 ~kllgkva~~yle~g~-~neAi~l~qr~ltl------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 279 MKLLGKVARAYLEAGK-PNEAIQLHQRALTL------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHHcCC-hHHHHHHHHHHhhc------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 4455667888999999 99999999999988 677788889999999999999999988888764 555555543
Q ss_pred C
Q psy875 269 S 269 (480)
Q Consensus 269 ~ 269 (480)
+
T Consensus 352 d 352 (361)
T COG3947 352 D 352 (361)
T ss_pred c
Confidence 3
No 479
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.84 E-value=43 Score=32.39 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=42.4
Q ss_pred HHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy875 159 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEK 216 (480)
Q Consensus 159 a~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 216 (480)
|...+.+|+|.++.-|-.-..++ .| .+.++..+|.+....+. |++|..++.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~i----aP-S~~~~RLlGl~l~e~k~-Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKI----AP-SPQAYRLLGLCLMENKR-YQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh----CC-cHHHHHHHHHHHHHHhh-HHHHHHHHHh
Confidence 55667889999998888777777 33 56788999999999999 9999988865
No 480
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=83.61 E-value=31 Score=33.87 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q psy875 120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL 199 (480)
Q Consensus 120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 199 (480)
..++..+.++|-++.|+.+-+. + ...+. +..+.|+.+.|.+..++. + ....|..||..
T Consensus 299 ~~i~~fL~~~G~~e~AL~~~~D-------~---~~rFe---LAl~lg~L~~A~~~a~~~------~---~~~~W~~Lg~~ 356 (443)
T PF04053_consen 299 QSIARFLEKKGYPELALQFVTD-------P---DHRFE---LALQLGNLDIALEIAKEL------D---DPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHHSS--------H---HHHHH---HHHHCT-HHHHHHHCCCC------S---THHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHhhcCC-------h---HHHhH---HHHhcCCHHHHHHHHHhc------C---cHHHHHHHHHH
Confidence 3455555666666666554432 1 11111 223556655555443211 1 12356677777
Q ss_pred HHHhCCchHHHHHHHHHHHH
Q psy875 200 YELQEKPFELVVSTHEKALD 219 (480)
Q Consensus 200 ~~~~~~~~~~A~~~~~~al~ 219 (480)
...+|+ ++-|.++|+++-+
T Consensus 357 AL~~g~-~~lAe~c~~k~~d 375 (443)
T PF04053_consen 357 ALRQGN-IELAEECYQKAKD 375 (443)
T ss_dssp HHHTTB-HHHHHHHHHHCT-
T ss_pred HHHcCC-HHHHHHHHHhhcC
Confidence 777777 7777777766543
No 481
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=83.60 E-value=46 Score=32.48 Aligned_cols=171 Identities=13% Similarity=0.019 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCCh-------HHHHHHHHHHhccccc-
Q psy875 77 TLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNL-------DSACSELHTVLSSDLC- 148 (480)
Q Consensus 77 ~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~-------~~A~~~~~~~l~~~~~- 148 (480)
.+..+|..+++. ++|+.|...|+.+.+-+...+-....+.++-..|......+.. +....+++.+......
T Consensus 210 q~R~LAD~aFml-~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 210 QMRRLADLAFML-RDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHH-ccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 456689995555 9999999999999987765555667777777777777766633 2444455544322111
Q ss_pred --------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHH---HHHHHHHHHHHH--HHhCCchHHHHHHHH
Q psy875 149 --------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE---AVKTLGEIGDLY--ELQEKPFELVVSTHE 215 (480)
Q Consensus 149 --------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~l~~~~--~~~~~~~~~A~~~~~ 215 (480)
.....+....+.++...+.|.+|...+-+.....-..... .+..+..+|.+| ..... ...-...++
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~-~~~~~~r~R 367 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNR-PSPGLTRFR 367 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCC-CCccchhhH
Confidence 1224566667788888898888877766655431111111 344444555555 22211 000000011
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875 216 KALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE 262 (480)
Q Consensus 216 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~ 262 (480)
....-+..-|.-|.+.|+...|...|..+...-+
T Consensus 368 -------------K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 368 -------------KYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred -------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 1122223456788999999999999999988765
No 482
>KOG0890|consensus
Probab=83.30 E-value=72 Score=37.72 Aligned_cols=163 Identities=13% Similarity=0.091 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC
Q psy875 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK 110 (480)
Q Consensus 31 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~ 110 (480)
+....++.+|...|.+....|+++.|..+.-+|.+. . ...++...|.. ..+.|+-..|+..+++.+.......
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----r--~~~i~~E~AK~-lW~~gd~~~Al~~Lq~~l~~~~~~~ 1736 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES----R--LPEIVLERAKL-LWQTGDELNALSVLQEILSKNFPDL 1736 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----c--cchHHHHHHHH-HHhhccHHHHHHHHHHHHHhhcccc
Confidence 556788999999999999999999999999998877 2 45566778888 4444999999999999996654331
Q ss_pred -Cc----------hHHHHHHHHHHHHHHhcCChH--HHHHHHHHHhcccccccHHHHHHHHH------------HHHHhh
Q psy875 111 -DD----------KLIRTVMRSIKKLYKKHDNLD--SACSELHTVLSSDLCKDLASCYISLA------------QTYKDN 165 (480)
Q Consensus 111 -~~----------~~~~~~~~~l~~~y~~~~~~~--~A~~~~~~~l~~~~~~~~~~~~~~la------------~~y~~~ 165 (480)
.+ .....+...++......++++ .-+++|+.+.++.+... ..|+.+| ..+.+.
T Consensus 1737 ~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe--~~hy~l~~yy~kll~~~~~~~~E~~ 1814 (2382)
T KOG0890|consen 1737 HTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE--DKHYHLGKYYDKLLEDYKSNKMEKS 1814 (2382)
T ss_pred cCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc--CceeeHHHHHHHHhhhhhccccccc
Confidence 11 111234445555555566533 45667777777665322 2233333 223344
Q ss_pred ccHHH---HHHHHHHHHhhhhc----CcHHHHHHHHHHHHHHHH
Q psy875 166 KQYNL---AVDYFNKELRLHAR----NFPEAVKTLGEIGDLYEL 202 (480)
Q Consensus 166 ~~~~~---A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~ 202 (480)
|++.. |+.+|.+++..-.. .-|.....|..+|.....
T Consensus 1815 g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~ 1858 (2382)
T KOG0890|consen 1815 GRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISS 1858 (2382)
T ss_pred ccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcc
Confidence 56665 66666777765222 244555666666665554
No 483
>PRK10941 hypothetical protein; Provisional
Probab=83.29 E-value=8.6 Score=34.78 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
.....++-.+|.+.++++.|+.+.+..+.+.+++ +.-+...|.+|.++|. +..|..-++..++.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d----p~e~RDRGll~~qL~c-~~~A~~DL~~fl~~ 244 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPED----PYEIRDRGLIYAQLDC-EHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCC-cHHHHHHHHHHHHh
Confidence 6678889999999999999999999999985443 4456678999999999 99999888777654
No 484
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.24 E-value=13 Score=25.96 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLH 67 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 67 (480)
..+..+...|.-+-..|++++|+.+|+++++++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L 36 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVL 36 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 346667778888888999999999999999986
No 485
>KOG2908|consensus
Probab=82.48 E-value=41 Score=31.14 Aligned_cols=150 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHhcccccccHHHHHHHH-----------------HHHHHhhccHHHHH
Q psy875 112 DKLIRTVMRSIKKLYKKHD--NLDSACSELHTVLSSDLCKDLASCYISL-----------------AQTYKDNKQYNLAV 172 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~~l-----------------a~~y~~~~~~~~A~ 172 (480)
++.++..+.++..+|.+.- ++..|+.-|-+...-...+.....|.|. -.+..+.++.++|+
T Consensus 16 ~~~l~~ew~~leeLy~eKLW~QLt~~l~~fvd~~~f~~~~~~l~lY~NFvsefe~kINplslvei~l~~~~~~~D~~~al 95 (380)
T KOG2908|consen 16 NPSLAAEWDRLEELYEEKLWHQLTLALVDFVDDPPFQAGDLLLQLYLNFVSEFETKINPLSLVEILLVVSEQISDKDEAL 95 (380)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhccHHHHH
Q ss_pred HHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHHHHHcCChH
Q psy875 173 DYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL--IRTVMRSMKKLYKKHDKFT 248 (480)
Q Consensus 173 ~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 248 (480)
+++++..+-... .+.....+...+|.++...|+ .+++.+.+.+.-+........+. ....|..-+++|...|++.
T Consensus 96 ~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~D-Lk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 96 EFLEKIIEKLKEYKEPDAVIYILTEIARLKLEIND-LKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHH
Q ss_pred HHHHHHHHHHHHHH
Q psy875 249 ELEQIKTELKSLEE 262 (480)
Q Consensus 249 ~A~~~~~~~~~l~~ 262 (480)
.+....-.+....+
T Consensus 175 ~yYr~~L~YL~~~d 188 (380)
T KOG2908|consen 175 SYYRHALLYLGCSD 188 (380)
T ss_pred HHHHHHHHHhcccc
No 486
>KOG3364|consensus
Probab=81.93 E-value=9.7 Score=30.01 Aligned_cols=66 Identities=6% Similarity=-0.046 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 190 VKTLGEIGDLYELQEK--PFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
..+.+++++++....+ +.++.+..++..++ ...+.......+.|+--+.+.|+|+++.+|.+...+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 4556677777776654 23445555555443 345566677888999999999999999999987765
No 487
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=81.28 E-value=53 Score=31.58 Aligned_cols=72 Identities=14% Similarity=0.064 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHh
Q psy875 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY-ELQEKSFEIVQSTHEKALDL 105 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y-~~~~~~~~~A~~~~~kAl~~ 105 (480)
.+...+.-....+...++.++|..|.+.+.....- ...... ...+..+...| ....-++.+|.+++++.+..
T Consensus 126 p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 126 PYEVFGDREWRRAKELFNRYDYGAAARILEELLRR-LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34444556667778888999999999999998774 121111 34455554443 33447899999999887765
No 488
>KOG2561|consensus
Probab=81.22 E-value=20 Score=34.27 Aligned_cols=117 Identities=9% Similarity=-0.091 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC-------cHHHHHHHHHHHHHHHHhCCch---HHHHHHHHHHHHHH
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN-------FPEAVKTLGEIGDLYELQEKPF---ELVVSTHEKALDLA 221 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~---~~A~~~~~~al~~~ 221 (480)
+..+...|.+....+.|++|+..+..|-+.+..- ....+.....+-++|+.+++ . .+|..-+..+-+-+
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLkn-itcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKN-ITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcc-cccCChHHHHHHHHHHhh
Confidence 4456677889999999999999888877664431 22334455567788888765 3 34544444443222
Q ss_pred H-------------HcCCcH---HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccCCC
Q psy875 222 R-------------QNKDDK---LIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSS 269 (480)
Q Consensus 222 ~-------------~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~ 269 (480)
. +.+..| ...+.+..-|.+.+.+|+-++|+++++.+...-.++...+.
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~ 305 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDE 305 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccch
Confidence 1 112223 34455567788999999999999999999887766655443
No 489
>KOG2561|consensus
Probab=81.11 E-value=48 Score=31.88 Aligned_cols=109 Identities=11% Similarity=-0.043 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hc------cCchHHHHHHHHHHHHHHh--hcc-------HHHHHHH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-AR------NFPEAVKTLGEIGDLYELQ--EKS-------FEIVQST 98 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~------~~~~~~~~~~~lg~~y~~~--~~~-------~~~A~~~ 98 (480)
.++..++..|.+......|++|+.++..|-+.| .. ...+.+..-..|-.+|+.. ... ...|.+.
T Consensus 161 mmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kg 240 (568)
T KOG2561|consen 161 MMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG 240 (568)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence 456678889999999999999999999998887 11 1112222222334443321 112 2333344
Q ss_pred HHHHHH-----hh-hcCCCc---hHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q psy875 99 HEKALD-----LA-RQNKDD---KLIRTVMRSIKKLYKKHDNLDSACSELHTVL 143 (480)
Q Consensus 99 ~~kAl~-----~~-~~~~~~---~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l 143 (480)
|.++.- +. -+.+.. ..+...+..-|.+.+.+|+-++|.++++.+.
T Consensus 241 f~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~ 294 (568)
T KOG2561|consen 241 FERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAH 294 (568)
T ss_pred hhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 444331 00 011122 3344556678899999999999999998554
No 490
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=81.01 E-value=25 Score=31.87 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh
Q psy875 95 VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD 164 (480)
Q Consensus 95 A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~ 164 (480)
|+.||.+|..+.+.. +..|+.||.++...|+.-.|+.+|-+++.... | ...+..||..++.+
T Consensus 1 A~~~Y~~A~~l~P~~------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~-P-f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN------GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRI-P-FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC------CCcccchhhhhccccchHHHHHHHHHHHhcCC-C-cHHHHHHHHHHHHH
Confidence 678999999997765 56788999999999999999999999995542 2 35667788777776
No 491
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=80.89 E-value=24 Score=30.99 Aligned_cols=102 Identities=11% Similarity=0.020 Sum_probs=65.2
Q ss_pred HhhccHHHHHHHHHHHHhhhhc--------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC-CcHHHHHH
Q psy875 163 KDNKQYNLAVDYFNKELRLHAR--------NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK-DDKLIRTV 233 (480)
Q Consensus 163 ~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~ 233 (480)
++.|+|+.|++...-+++.... .+...+.-....+......|++++-+ +......+...-. ........
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~--~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY--FLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH--HHHHHHHHHhcCCCChHHHHHH
Confidence 5678899999988888876222 13334455555666666777743332 2333333433222 33455677
Q ss_pred HHHHHHHHH---------HcCChHHHHHHHHHHHHHHHhhcc
Q psy875 234 MRSMKKLYK---------KHDKFTELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 234 ~~~l~~~~~---------~~g~~~~A~~~~~~~~~l~~~~~~ 266 (480)
+..+|..+. ..++...|+.+++++..+..+++-
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 778888773 556888999999999998876654
No 492
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=80.76 E-value=6.2 Score=42.30 Aligned_cols=107 Identities=11% Similarity=-0.022 Sum_probs=71.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcccccccH-HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHH
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDL-ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIG 197 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~ 197 (480)
...+.+..-+.|++|+..|++.-...|.... ..+...+|.+..++-.-..--+-|.+|+..+.. ..+..+.=|...|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKA 559 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHH
Confidence 4456777788999999999988877766332 456677777776542221112344444444333 3344555677888
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHcCCcH
Q psy875 198 DLYELQEKPFELVVSTHEKALDLARQNKDDK 228 (480)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 228 (480)
.+|..+|. |++-++.|.-|++.....+.-+
T Consensus 560 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 560 LVYQRLGE-YNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHHhhh-HHHHHHHHHHHHHhcCCCCccH
Confidence 89999999 9999999999987665554433
No 493
>KOG4521|consensus
Probab=80.76 E-value=54 Score=35.74 Aligned_cols=123 Identities=10% Similarity=0.040 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccc-------------------------cH--HHHHHHHHHHHHhhccHHH
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-------------------------DL--ASCYISLAQTYKDNKQYNL 170 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~-------------------------~~--~~~~~~la~~y~~~~~~~~ 170 (480)
.-..+|..|...|+..+|+.+|.++....... .. ...|...-+++.+-+-.+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 34578899999999999999999776433221 11 1112222344444455566
Q ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChH
Q psy875 171 AVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFT 248 (480)
Q Consensus 171 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 248 (480)
+.....+|++..+.+.+..+.++.++=.-+..+|. +-+|... .-+..+.......++.+..+....|..+
T Consensus 1002 vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh-~~qAy~a-------i~~npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1002 VCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGH-WFQAYKA-------ILRNPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhh-HHHHHHH-------HHcCCcHHHHHHHHHHHHHHHHhccchH
Confidence 66666666666666667777777777777777777 6555443 3344555666777777777777777654
No 494
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.52 E-value=17 Score=25.41 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875 195 EIGDLYELQEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~ 222 (480)
..|.-+...|+ +++|+.+|+++++...
T Consensus 11 ~~AVe~D~~gr-~~eAi~~Y~~aIe~L~ 37 (75)
T cd02682 11 INAVKAEKEGN-AEDAITNYKKAIEVLS 37 (75)
T ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHHHH
Confidence 33444456677 7777777777776543
No 495
>KOG0890|consensus
Probab=80.49 E-value=70 Score=37.82 Aligned_cols=127 Identities=11% Similarity=0.019 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhhhcC-CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHH
Q psy875 92 FEIVQSTHEKALDLARQN-KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNL 170 (480)
Q Consensus 92 ~~~A~~~~~kAl~~~~~~-~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~ 170 (480)
..+-+-.+++++-..... +-...++.+|.+.|.+-+..|+++.|-.+.-++.+.. ...++...|...-..|+-..
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----~~~i~~E~AK~lW~~gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----LPEIVLERAKLLWQTGDELN 1720 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----cchHHHHHHHHHHhhccHHH
Confidence 455555677776443333 4457789999999999999999999999998887554 44778899999999999999
Q ss_pred HHHHHHHHHhhhhcC-------------cHHHHHHHHHHHHHHHHhCCch--HHHHHHHHHHHHHHHH
Q psy875 171 AVDYFNKELRLHARN-------------FPEAVKTLGEIGDLYELQEKPF--ELVVSTHEKALDLARQ 223 (480)
Q Consensus 171 A~~~~~~al~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~--~~A~~~~~~al~~~~~ 223 (480)
|+.++++.++....+ ......+.+.++......++ + ..-+.+|.++.++..+
T Consensus 1721 Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1721 ALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN-FESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred HHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHccc
Confidence 999999999764331 11112344455555555555 4 3456778888777553
No 496
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=80.26 E-value=6.4 Score=34.73 Aligned_cols=81 Identities=15% Similarity=0.005 Sum_probs=59.4
Q ss_pred ccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy875 166 KQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK 243 (480)
Q Consensus 166 ~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (480)
-..+.|.+++.+|+-..++ +......+....+..|+..++ |+.|..||.+|+.......-+....+.-..|-....+
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~-Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~kk 131 (368)
T COG5091 53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKD-YELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNKK 131 (368)
T ss_pred cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHH-HHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhhHh
Confidence 4567889999999887665 555566677777888888899 9999999999998866555555555555566666666
Q ss_pred cCCh
Q psy875 244 HDKF 247 (480)
Q Consensus 244 ~g~~ 247 (480)
+++-
T Consensus 132 Q~~~ 135 (368)
T COG5091 132 QKDS 135 (368)
T ss_pred hccc
Confidence 6554
No 497
>KOG0687|consensus
Probab=80.09 E-value=49 Score=30.50 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc----ccccHHHHHHHHHHHHHhhccH
Q psy875 93 EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD----LCKDLASCYISLAQTYKDNKQY 168 (480)
Q Consensus 93 ~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~~~la~~y~~~~~~ 168 (480)
++-++-+.++++-+.+.........+..++|..|.+.|+-+.|++.+.+..... ..-++..+...+|..|.+..=.
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV 160 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLV 160 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHH
Confidence 344555666666555555567778899999999999999999999988655332 2244566677788888877544
Q ss_pred HHHHHHHHHHHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875 169 NLAVDYFNKELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ 223 (480)
Q Consensus 169 ~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 223 (480)
.+.++-.+..++--.+ +......+|. |.......+ +.+|...|-.++..+..
T Consensus 161 ~~~iekak~liE~GgDWeRrNRlKvY~--Gly~msvR~-Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 161 TESIEKAKSLIEEGGDWERRNRLKVYQ--GLYCMSVRN-FKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHhCCChhhhhhHHHHH--HHHHHHHHh-HHHHHHHHHHHcccccc
Confidence 4443333333322111 2333344443 333344455 88888888777765443
No 498
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=79.71 E-value=4.7 Score=28.32 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=40.7
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc
Q psy875 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440 (480)
Q Consensus 385 g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 440 (480)
....+..|+..|+.++++.+++.+ .++ ...+..|+..-+.+++++|++.
T Consensus 6 t~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 6 TKKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 456789999999999999999765 222 3468999999999999999987
No 499
>KOG1920|consensus
Probab=79.70 E-value=1e+02 Score=33.87 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=35.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHh------cccc--c---ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875 121 SIKKLYKKHDNLDSACSELHTVL------SSDL--C---KDLASCYISLAQTYKDNKQYNLAVDYFNKELR 180 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l------~~~~--~---~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~ 180 (480)
.-|.+|...|+.++|++.|+.+. .... . ..+...-..|+.-+..++++-+|-+...+.+.
T Consensus 957 ~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 66777888888888888887332 1111 1 11222224566666677777777666555443
No 500
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=79.43 E-value=39 Score=36.58 Aligned_cols=104 Identities=11% Similarity=0.025 Sum_probs=69.2
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHH
Q psy875 43 LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSI 122 (480)
Q Consensus 43 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l 122 (480)
...++.....|+.|+..|++.-.-+.+. ..-..+.+.+|.....+ -.-..--+-+.+|+..+....+.+.-.--|...
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGR-KEGYEAQFRLGITLLEK-ASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGK 558 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCc-ccchHHHHHhhHHHHHH-HHhcCChHHHHHHHHHHHHhcCCCCCchHHHhH
Confidence 3456666788999999999877664221 22234556666663322 111111256777777666665555555567788
Q ss_pred HHHHHhcCChHHHHHHHHHHhccccc
Q psy875 123 KKLYKKHDNLDSACSELHTVLSSDLC 148 (480)
Q Consensus 123 ~~~y~~~~~~~~A~~~~~~~l~~~~~ 148 (480)
|.+|..+|+|++-+++|..++...+.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999876655
Done!