Query psy875
Match_columns 480
No_of_seqs 615 out of 4637
Neff 10.7
Searched_HMMs 29240
Date Fri Aug 16 18:18:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 100.0 1.9E-29 6.3E-34 211.5 16.5 153 309-479 10-162 (169)
2 4gpm_A Engineered protein OR26 99.9 1E-26 3.6E-31 194.8 16.3 125 338-480 6-130 (169)
3 1d9s_A Cyclin-dependent kinase 99.9 6.1E-27 2.1E-31 189.8 11.7 135 325-478 1-136 (136)
4 4b93_B Ankyrin repeat domain-c 99.9 3.9E-26 1.4E-30 207.1 15.2 140 323-480 73-212 (269)
5 3ulq_A Response regulator aspa 99.9 7.4E-24 2.5E-28 203.4 31.4 256 5-267 112-375 (383)
6 1oy3_D Transcription factor in 99.9 9E-26 3.1E-30 207.2 17.0 101 378-480 151-252 (282)
7 1yyh_A HN1;, notch 1, ankyrin 99.9 1.5E-25 5.2E-30 202.1 16.2 146 333-480 54-217 (253)
8 3v30_A DNA-binding protein rfx 99.9 9.5E-26 3.2E-30 190.8 12.9 140 322-479 22-161 (172)
9 3v31_A Ankyrin repeat family A 99.9 1.3E-25 4.4E-30 189.0 13.6 148 313-478 2-160 (167)
10 2rfm_A Putative ankyrin repeat 99.9 2.1E-25 7.1E-30 192.4 15.1 150 309-476 30-190 (192)
11 1k1a_A B-cell lymphoma 3-encod 99.9 7.8E-25 2.7E-29 196.0 18.9 170 309-480 4-210 (241)
12 1ihb_A P18-INK4C(INK6), cyclin 99.9 3.4E-25 1.2E-29 185.4 15.0 147 313-478 15-162 (162)
13 1ikn_D Protein (I-kappa-B-alph 99.9 2.3E-25 7.8E-30 198.8 14.4 157 311-479 42-210 (236)
14 3sf4_A G-protein-signaling mod 99.9 6E-23 2.1E-27 198.1 31.0 260 3-265 47-341 (406)
15 3aji_A 26S proteasome non-ATPa 99.9 1E-24 3.4E-29 194.0 16.9 151 312-480 38-199 (231)
16 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.3E-24 4.4E-29 183.2 16.2 149 310-476 21-169 (169)
17 4a1s_A PINS, partner of inscut 99.9 4.6E-23 1.6E-27 199.7 29.5 261 3-266 86-378 (411)
18 3f6q_A Integrin-linked protein 99.9 5.2E-25 1.8E-29 187.5 13.4 145 318-480 21-165 (179)
19 3ro2_A PINS homolog, G-protein 99.9 7.6E-23 2.6E-27 191.8 29.2 260 3-265 43-337 (338)
20 2jab_A H10-2-G3; HER2, darpin, 99.9 1.4E-24 4.7E-29 175.9 14.8 125 334-476 12-136 (136)
21 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.1E-24 7.1E-29 172.4 15.4 126 335-478 1-126 (126)
22 4b93_B Ankyrin repeat domain-c 99.9 1.3E-25 4.5E-30 203.7 9.2 151 311-479 83-245 (269)
23 3q15_A PSP28, response regulat 99.9 9.9E-23 3.4E-27 195.2 29.5 241 20-266 124-371 (378)
24 2xai_A ASB-9, ankyrin repeat a 99.9 1.4E-24 4.9E-29 196.6 15.8 148 313-480 35-193 (261)
25 2rfa_A Transient receptor pote 99.9 2.7E-24 9.2E-29 191.3 17.2 153 314-479 3-184 (232)
26 3b7b_A Euchromatic histone-lys 99.9 3E-24 1E-28 191.7 17.2 151 328-480 36-204 (237)
27 2dzn_A Probable 26S proteasome 99.9 2.5E-24 8.4E-29 191.0 16.5 151 312-480 34-202 (228)
28 2f8y_A Notch homolog 1, transl 99.9 3.2E-24 1.1E-28 189.6 17.1 150 312-479 56-217 (223)
29 1bi7_B P16INK4A, MTS1, multipl 99.9 3.5E-25 1.2E-29 184.0 10.1 130 332-480 8-138 (156)
30 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.7E-24 5.8E-29 179.9 13.3 135 321-475 21-155 (156)
31 3twr_A Tankyrase-2; ankyrin re 99.9 1.6E-24 5.6E-29 181.8 13.3 136 323-477 29-164 (165)
32 2f8y_A Notch homolog 1, transl 99.9 5.9E-24 2E-28 187.9 17.6 151 312-480 23-185 (223)
33 2xai_A ASB-9, ankyrin repeat a 99.9 4.4E-24 1.5E-28 193.4 16.7 149 313-480 2-161 (261)
34 1awc_B Protein (GA binding pro 99.9 3.7E-24 1.3E-28 177.2 14.7 141 313-472 12-152 (153)
35 2rfm_A Putative ankyrin repeat 99.9 2.3E-24 8E-29 185.7 13.9 134 329-480 28-161 (192)
36 2pnn_A Transient receptor pote 99.9 1.1E-24 3.7E-29 198.9 12.3 167 311-479 51-260 (273)
37 2y1l_E Darpin-8.4; hydrolase-i 99.9 5.8E-24 2E-28 179.1 15.7 129 334-480 12-140 (169)
38 3v31_A Ankyrin repeat family A 99.9 6E-24 2E-28 178.8 15.7 128 335-480 2-129 (167)
39 1ikn_D Protein (I-kappa-B-alph 99.9 1.8E-24 6.1E-29 193.0 13.1 153 310-480 4-178 (236)
40 2rfa_A Transient receptor pote 99.9 2.8E-24 9.4E-29 191.3 13.9 165 312-479 35-223 (232)
41 1awc_B Protein (GA binding pro 99.9 8.8E-24 3E-28 174.9 15.0 126 336-480 2-127 (153)
42 3d9h_A CDNA FLJ77766, highly s 99.9 1E-23 3.6E-28 193.4 16.7 148 313-480 91-249 (285)
43 3jxi_A Vanilloid receptor-rela 99.9 1.6E-24 5.6E-29 196.3 11.0 165 312-478 44-250 (260)
44 3sf4_A G-protein-signaling mod 99.9 6.4E-22 2.2E-26 190.9 29.7 232 31-264 41-300 (406)
45 2etb_A Transient receptor pote 99.9 3.2E-24 1.1E-28 193.8 12.5 163 311-478 40-246 (256)
46 3d9h_A CDNA FLJ77766, highly s 99.9 1.4E-23 4.7E-28 192.6 16.3 152 310-480 55-217 (285)
47 3aji_A 26S proteasome non-ATPa 99.9 1.7E-23 5.9E-28 186.0 16.4 149 314-480 6-166 (231)
48 4a1s_A PINS, partner of inscut 99.9 7E-22 2.4E-26 191.3 28.9 231 32-264 81-336 (411)
49 2dzn_A Probable 26S proteasome 99.9 1.7E-23 5.8E-28 185.6 16.0 152 314-480 2-168 (228)
50 3hra_A Ankyrin repeat family p 99.9 2.6E-23 8.9E-28 180.6 16.8 93 382-476 103-201 (201)
51 1s70_B 130 kDa myosin-binding 99.9 3E-23 1E-27 192.1 18.1 151 312-480 49-259 (299)
52 3ro2_A PINS homolog, G-protein 99.9 1.6E-21 5.3E-26 182.8 30.0 257 3-264 12-296 (338)
53 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.5E-24 5.2E-29 193.6 8.8 149 313-480 4-166 (239)
54 3hra_A Ankyrin repeat family p 99.9 1.9E-23 6.6E-28 181.4 15.4 146 317-480 20-172 (201)
55 2etb_A Transient receptor pote 99.9 3E-24 1E-28 194.1 10.0 147 326-479 29-207 (256)
56 2fo1_E LIN-12 protein; beta-ba 99.9 1.9E-23 6.5E-28 199.4 15.4 165 313-479 124-339 (373)
57 4hbd_A KN motif and ankyrin re 99.9 1.2E-23 4.2E-28 191.9 13.4 148 311-476 108-273 (276)
58 3nf1_A KLC 1, kinesin light ch 99.9 1.8E-21 6.1E-26 180.6 28.2 228 33-262 23-309 (311)
59 3v30_A DNA-binding protein rfx 99.9 3.7E-23 1.3E-27 174.8 15.1 127 336-480 2-129 (172)
60 3kea_A K1L; tropism, ANK repea 99.9 7.7E-24 2.6E-28 194.2 11.8 148 314-480 62-222 (285)
61 3f6q_A Integrin-linked protein 99.9 5E-23 1.7E-27 175.2 15.7 128 335-480 4-132 (179)
62 1yyh_A HN1;, notch 1, ankyrin 99.9 2.6E-23 8.8E-28 187.5 14.5 147 313-477 89-247 (253)
63 3ljn_A Hypothetical protein; a 99.9 8.2E-24 2.8E-28 201.6 11.6 130 332-479 134-270 (364)
64 2vge_A RELA-associated inhibit 99.9 6E-24 2E-28 188.0 9.7 132 331-480 16-150 (229)
65 3utm_A Tankyrase-1; tankyrase, 99.9 7.4E-23 2.5E-27 193.9 17.9 167 312-480 89-307 (351)
66 2pnn_A Transient receptor pote 99.9 1E-23 3.5E-28 192.4 11.4 163 310-479 9-219 (273)
67 1n11_A Ankyrin; clathrin, BAND 99.9 4.1E-23 1.4E-27 201.8 16.3 150 313-480 211-371 (437)
68 3ulq_A Response regulator aspa 99.9 2.5E-21 8.7E-26 185.7 28.5 216 38-256 104-331 (383)
69 3twr_A Tankyrase-2; ankyrin re 99.9 4.8E-23 1.6E-27 172.9 14.3 130 333-480 5-135 (165)
70 1ihb_A P18-INK4C(INK6), cyclin 99.9 3.1E-23 1.1E-27 173.5 12.7 126 335-479 4-129 (162)
71 3ljn_A Hypothetical protein; a 99.9 2.5E-23 8.6E-28 198.2 13.6 166 313-480 52-238 (364)
72 1wdy_A 2-5A-dependent ribonucl 99.9 1.2E-22 4.1E-27 186.5 17.1 150 313-480 104-280 (285)
73 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.4E-23 8.3E-28 185.8 11.6 128 334-480 3-130 (239)
74 3c5r_A BARD-1, BRCA1-associate 99.9 8.3E-24 2.8E-28 171.5 7.7 130 331-478 5-134 (137)
75 4g8k_A 2-5A-dependent ribonucl 99.9 1.2E-22 4E-27 191.4 16.2 147 311-480 165-328 (337)
76 3jxi_A Vanilloid receptor-rela 99.9 1.8E-23 6.2E-28 189.4 8.8 139 334-479 44-211 (260)
77 2fo1_E LIN-12 protein; beta-ba 99.9 1.5E-22 5.1E-27 193.2 15.3 157 313-479 198-372 (373)
78 3kea_A K1L; tropism, ANK repea 99.9 8.1E-23 2.8E-27 187.4 12.7 153 309-480 26-188 (285)
79 1k1a_A B-cell lymphoma 3-encod 99.9 3.1E-23 1.1E-27 185.6 9.4 148 313-477 78-240 (241)
80 3q15_A PSP28, response regulat 99.9 7.3E-21 2.5E-25 182.2 26.5 218 36-256 100-328 (378)
81 1n0q_A 3ANK, 3 ankyrin repeats 99.9 2.2E-22 7.7E-27 151.0 12.6 92 385-478 2-93 (93)
82 3t8k_A Uncharacterized protein 99.9 1.5E-23 5.1E-28 178.6 6.5 125 334-476 36-177 (186)
83 1n11_A Ankyrin; clathrin, BAND 99.9 3.1E-22 1.1E-26 195.6 16.5 149 313-479 13-172 (437)
84 3uq3_A Heat shock protein STI1 99.9 1.9E-20 6.4E-25 168.7 26.4 214 35-265 3-241 (258)
85 3b7b_A Euchromatic histone-lys 99.9 7.7E-22 2.6E-26 176.0 17.0 151 328-480 3-171 (237)
86 3utm_A Tankyrase-1; tankyrase, 99.9 4.7E-22 1.6E-26 188.3 16.6 150 313-480 57-274 (351)
87 1oy3_D Transcription factor in 99.9 2.9E-22 9.9E-27 183.7 14.0 153 310-480 5-219 (282)
88 1sw6_A Regulatory protein SWI6 99.9 8.3E-23 2.8E-27 191.2 10.4 142 321-480 115-310 (327)
89 3aaa_C Myotrophin, protein V-1 99.9 1.4E-22 4.6E-27 161.0 10.1 112 334-463 5-116 (123)
90 2pl2_A Hypothetical conserved 99.9 2.2E-21 7.4E-26 170.5 18.8 198 37-259 5-213 (217)
91 4g8k_A 2-5A-dependent ribonucl 99.9 2.9E-22 1E-26 188.7 14.1 151 312-480 123-300 (337)
92 4hbd_A KN motif and ankyrin re 99.9 2.9E-22 9.8E-27 182.8 12.7 134 329-480 104-244 (276)
93 1bd8_A P19INK4D CDK4/6 inhibit 99.9 6.1E-22 2.1E-26 164.4 13.2 124 337-480 3-127 (156)
94 3eu9_A Huntingtin-interacting 99.9 5.9E-22 2E-26 177.0 13.9 132 330-479 103-236 (240)
95 3edt_B KLC 2, kinesin light ch 99.9 1.2E-20 4.2E-25 172.2 22.8 212 47-260 11-281 (283)
96 1wdy_A 2-5A-dependent ribonucl 99.9 3E-21 1E-25 177.2 17.6 141 324-480 26-176 (285)
97 3ehr_A Osteoclast-stimulating 99.9 1.8E-22 6.1E-27 178.2 8.5 129 333-479 70-199 (222)
98 4eqf_A PEX5-related protein; a 99.9 6.6E-21 2.3E-25 181.5 19.9 216 34-265 96-315 (365)
99 1qqe_A Vesicular transport pro 99.9 2.3E-20 8E-25 171.8 22.6 223 32-257 32-266 (292)
100 1s70_B 130 kDa myosin-binding 99.9 1.9E-21 6.6E-26 179.9 14.8 132 333-480 37-226 (299)
101 3lvq_E ARF-GAP with SH3 domain 99.9 1.8E-21 6.3E-26 192.4 14.3 132 337-480 133-267 (497)
102 3ui2_A Signal recognition part 99.9 5.4E-22 1.8E-26 177.5 8.7 125 334-477 43-184 (244)
103 1dcq_A PYK2-associated protein 99.9 3.9E-21 1.3E-25 174.9 14.1 133 335-479 129-264 (278)
104 3deo_A Signal recognition part 99.9 3.3E-21 1.1E-25 164.5 12.0 123 334-475 42-181 (183)
105 2ifu_A Gamma-SNAP; membrane fu 99.8 2.4E-19 8.1E-24 166.3 25.0 207 49-258 3-222 (307)
106 3eu9_A Huntingtin-interacting 99.8 1.5E-20 5.3E-25 167.7 16.0 152 311-480 39-204 (240)
107 3jue_A Arfgap with coiled-coil 99.8 6.9E-21 2.4E-25 179.1 13.5 130 332-477 195-325 (368)
108 3t8k_A Uncharacterized protein 99.8 2.4E-21 8.2E-26 165.0 9.1 124 338-480 8-148 (186)
109 1fch_A Peroxisomal targeting s 99.8 1.4E-19 4.7E-24 172.3 22.1 218 35-264 96-363 (368)
110 2b0o_E UPLC1; arfgap, structur 99.8 7.6E-21 2.6E-25 175.0 12.2 131 336-478 151-284 (301)
111 3vtx_A MAMA; tetratricopeptide 99.8 2.3E-19 7.8E-24 153.1 20.1 168 35-220 3-170 (184)
112 3c5r_A BARD-1, BRCA1-associate 99.8 2E-20 7E-25 151.4 12.1 98 381-480 6-103 (137)
113 2ho1_A Type 4 fimbrial biogene 99.8 6.9E-19 2.4E-23 158.1 23.0 207 32-260 32-238 (252)
114 3u4t_A TPR repeat-containing p 99.8 1.8E-19 6.3E-24 163.8 19.4 210 37-261 37-251 (272)
115 1w3b_A UDP-N-acetylglucosamine 99.8 3.1E-19 1.1E-23 171.4 21.2 209 34-260 64-300 (388)
116 2l6b_A NR1C; ankyrin, consensu 99.8 6.5E-21 2.2E-25 149.3 7.7 99 380-480 4-102 (115)
117 3aaa_C Myotrophin, protein V-1 99.8 4.2E-20 1.4E-24 146.5 12.5 95 384-480 6-100 (123)
118 1w3b_A UDP-N-acetylglucosamine 99.8 2.5E-19 8.5E-24 172.1 20.4 197 39-259 171-367 (388)
119 3nf1_A KLC 1, kinesin light ch 99.8 2.3E-18 7.9E-23 159.5 25.0 188 33-222 65-309 (311)
120 2ifu_A Gamma-SNAP; membrane fu 99.8 1.5E-18 5E-23 161.0 23.4 216 31-252 30-253 (307)
121 2vq2_A PILW, putative fimbrial 99.8 3.8E-18 1.3E-22 150.1 24.9 205 35-260 6-211 (225)
122 1bi7_B P16INK4A, MTS1, multipl 99.8 6.8E-21 2.3E-25 158.0 6.7 130 312-460 10-151 (156)
123 2q7f_A YRRB protein; TPR, prot 99.8 4.2E-19 1.4E-23 158.4 18.7 204 33-260 19-222 (243)
124 1d9s_A Cyclin-dependent kinase 99.8 3.5E-20 1.2E-24 149.8 10.3 98 380-480 7-105 (136)
125 2vge_A RELA-associated inhibit 99.8 4.4E-20 1.5E-24 163.1 11.5 114 352-480 1-114 (229)
126 4gyw_A UDP-N-acetylglucosamine 99.8 5.1E-19 1.8E-23 180.9 20.1 172 34-223 6-177 (723)
127 2h6f_A Protein farnesyltransfe 99.8 8.3E-19 2.8E-23 166.6 19.5 202 32-256 92-301 (382)
128 4eqf_A PEX5-related protein; a 99.8 1.7E-18 5.7E-23 164.8 21.6 204 37-260 65-276 (365)
129 1fch_A Peroxisomal targeting s 99.8 4.7E-18 1.6E-22 161.7 24.7 205 37-263 64-317 (368)
130 1qqe_A Vesicular transport pro 99.8 2.2E-18 7.4E-23 158.7 21.4 213 6-220 47-269 (292)
131 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.7E-19 5.7E-24 135.2 11.3 92 336-443 2-93 (93)
132 2jab_A H10-2-G3; HER2, darpin, 99.8 1.3E-19 4.5E-24 146.4 11.4 96 383-480 12-107 (136)
133 3edt_B KLC 2, kinesin light ch 99.8 5.2E-18 1.8E-22 154.7 23.3 186 33-220 39-281 (283)
134 3hym_B Cell division cycle pro 99.8 1E-18 3.4E-23 163.5 18.7 203 37-259 90-298 (330)
135 3hym_B Cell division cycle pro 99.8 1.8E-18 6E-23 161.8 20.4 206 37-260 56-265 (330)
136 3uq3_A Heat shock protein STI1 99.8 2.8E-18 9.6E-23 154.4 20.7 197 36-240 37-256 (258)
137 2pl2_A Hypothetical conserved 99.8 6.5E-19 2.2E-23 154.6 15.8 195 4-218 6-212 (217)
138 3vtx_A MAMA; tetratricopeptide 99.8 3.7E-18 1.3E-22 145.5 20.1 169 74-262 4-172 (184)
139 1sw6_A Regulatory protein SWI6 99.8 2.9E-20 9.8E-25 173.9 7.4 135 312-464 129-327 (327)
140 4i17_A Hypothetical protein; T 99.8 3.1E-18 1.1E-22 151.5 20.1 195 38-261 8-210 (228)
141 4abn_A Tetratricopeptide repea 99.8 9.2E-19 3.2E-23 172.3 18.3 200 36-257 101-318 (474)
142 3cv0_A Peroxisome targeting si 99.8 7.1E-18 2.4E-22 157.4 23.6 217 35-263 53-318 (327)
143 2qfc_A PLCR protein; TPR, HTH, 99.8 1.2E-17 4.1E-22 153.8 24.4 192 35-229 73-275 (293)
144 1hz4_A MALT regulatory protein 99.8 5.8E-17 2E-21 154.7 29.9 238 24-264 80-326 (373)
145 3ieg_A DNAJ homolog subfamily 99.8 1.2E-17 4E-22 158.0 24.8 198 44-259 127-334 (359)
146 3u4t_A TPR repeat-containing p 99.8 1.5E-18 5.1E-23 157.8 17.1 205 38-263 4-211 (272)
147 4gyw_A UDP-N-acetylglucosamine 99.8 2.3E-18 7.7E-23 176.2 20.3 174 70-263 4-177 (723)
148 1ouv_A Conserved hypothetical 99.8 2.3E-17 7.8E-22 150.2 23.5 223 4-261 7-252 (273)
149 3gw4_A Uncharacterized protein 99.8 2.2E-17 7.4E-22 143.0 21.6 190 48-243 3-199 (203)
150 1n0r_A 4ANK, 4 ankyrin repeats 99.8 1.3E-18 4.4E-23 138.4 12.7 94 385-480 2-95 (126)
151 3u3w_A Transcriptional activat 99.8 1.1E-17 3.8E-22 154.0 20.8 191 37-229 75-275 (293)
152 4g1t_A Interferon-induced prot 99.8 3.4E-18 1.2E-22 168.6 18.2 214 33-260 47-276 (472)
153 2qfc_A PLCR protein; TPR, HTH, 99.8 3.2E-17 1.1E-21 150.9 23.5 190 75-266 75-272 (293)
154 3u3w_A Transcriptional activat 99.8 3.4E-17 1.2E-21 150.7 23.6 189 76-266 76-272 (293)
155 2h6f_A Protein farnesyltransfe 99.8 1.7E-18 5.7E-23 164.5 15.1 228 4-257 98-344 (382)
156 2y4t_A DNAJ homolog subfamily 99.8 4.5E-17 1.5E-21 159.4 25.6 203 40-260 146-358 (450)
157 1hz4_A MALT regulatory protein 99.8 1.1E-16 3.6E-21 152.8 27.1 224 31-257 8-241 (373)
158 3ieg_A DNAJ homolog subfamily 99.8 3.9E-17 1.3E-21 154.4 23.9 202 37-260 3-217 (359)
159 3qky_A Outer membrane assembly 99.8 2.1E-17 7E-22 149.5 20.9 206 36-251 14-252 (261)
160 3ui2_A Signal recognition part 99.8 3.6E-20 1.2E-24 165.6 2.0 93 385-480 45-138 (244)
161 2zgd_A 3 repeat synthetic anky 99.8 1.7E-18 5.8E-23 134.0 11.2 90 381-472 20-109 (110)
162 2xpi_A Anaphase-promoting comp 99.8 3.8E-17 1.3E-21 166.0 24.1 205 36-260 372-579 (597)
163 3fp2_A TPR repeat-containing p 99.8 2.1E-17 7.2E-22 165.6 21.7 206 37-262 276-493 (537)
164 2l6b_A NR1C; ankyrin, consensu 99.8 2.5E-19 8.4E-24 140.2 5.9 108 332-457 5-112 (115)
165 2aja_A Ankyrin repeat family p 99.8 3.7E-21 1.3E-25 181.7 -5.7 143 314-479 92-251 (376)
166 3deo_A Signal recognition part 99.8 1.8E-18 6.1E-23 147.4 11.0 93 385-480 44-137 (183)
167 2y4t_A DNAJ homolog subfamily 99.8 6.6E-17 2.3E-21 158.2 23.6 206 33-260 22-240 (450)
168 3cv0_A Peroxisome targeting si 99.8 1.6E-16 5.5E-21 148.2 25.2 203 37-261 21-270 (327)
169 2b0o_E UPLC1; arfgap, structur 99.8 7.8E-19 2.7E-23 161.5 8.7 132 311-466 159-299 (301)
170 2aja_A Ankyrin repeat family p 99.8 7.2E-20 2.5E-24 172.9 1.7 128 336-477 92-223 (376)
171 3ehr_A Osteoclast-stimulating 99.8 1.8E-18 6.3E-23 152.3 10.0 95 384-480 72-167 (222)
172 1ouv_A Conserved hypothetical 99.8 2.1E-16 7.1E-21 143.8 23.6 191 36-259 5-214 (273)
173 2xpi_A Anaphase-promoting comp 99.8 1.3E-16 4.4E-21 162.1 24.1 211 36-260 304-545 (597)
174 2q7f_A YRRB protein; TPR, prot 99.7 4E-17 1.4E-21 145.5 17.6 199 3-220 23-222 (243)
175 3fp2_A TPR repeat-containing p 99.7 1.2E-16 4.2E-21 160.0 23.1 209 33-260 239-457 (537)
176 2gw1_A Mitochondrial precursor 99.7 9.2E-17 3.2E-21 159.8 21.1 209 33-260 233-444 (514)
177 4abn_A Tetratricopeptide repea 99.7 1.6E-16 5.5E-21 156.3 21.8 174 70-261 97-288 (474)
178 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.5E-16 1.9E-20 140.8 22.0 206 33-260 39-244 (275)
179 4b4t_Q 26S proteasome regulato 99.7 1.8E-15 6.2E-20 147.3 26.6 224 40-266 7-251 (434)
180 4i17_A Hypothetical protein; T 99.7 5.5E-16 1.9E-20 137.0 20.8 157 76-247 8-169 (228)
181 2gw1_A Mitochondrial precursor 99.7 1.1E-16 3.6E-21 159.4 18.1 204 37-260 270-478 (514)
182 4g1t_A Interferon-induced prot 99.7 4.4E-16 1.5E-20 153.4 21.2 243 3-259 51-362 (472)
183 2ho1_A Type 4 fimbrial biogene 99.7 6.5E-16 2.2E-20 138.6 19.5 170 35-220 69-238 (252)
184 3ro3_A PINS homolog, G-protein 99.7 1.6E-15 5.5E-20 125.7 19.5 154 110-264 3-162 (164)
185 3lvq_E ARF-GAP with SH3 domain 99.7 4E-17 1.4E-21 161.3 11.1 129 310-462 139-276 (497)
186 3mkr_A Coatomer subunit epsilo 99.7 2E-15 6.7E-20 138.5 21.5 201 36-261 64-265 (291)
187 3ro3_A PINS homolog, G-protein 99.7 9.2E-16 3.1E-20 127.1 17.5 151 72-224 6-162 (164)
188 3as5_A MAMA; tetratricopeptide 99.7 6.7E-16 2.3E-20 131.0 16.8 170 35-222 6-175 (186)
189 4ga2_A E3 SUMO-protein ligase 99.7 1.1E-16 3.7E-21 131.4 10.9 147 42-205 2-149 (150)
190 3gw4_A Uncharacterized protein 99.7 4.7E-15 1.6E-19 128.1 21.7 171 89-266 5-182 (203)
191 2yhc_A BAMD, UPF0169 lipoprote 99.7 7.2E-15 2.5E-19 129.5 22.6 176 37-219 4-212 (225)
192 3jue_A Arfgap with coiled-coil 99.7 1.4E-16 4.9E-21 149.7 11.2 151 314-480 211-366 (368)
193 1dcq_A PYK2-associated protein 99.7 3E-16 1E-20 142.6 12.9 99 331-445 164-265 (278)
194 3as5_A MAMA; tetratricopeptide 99.7 3.5E-15 1.2E-19 126.6 18.7 172 71-262 4-175 (186)
195 2vq2_A PILW, putative fimbrial 99.7 9.9E-15 3.4E-19 128.1 21.9 173 70-260 3-176 (225)
196 3urz_A Uncharacterized protein 99.7 9.7E-15 3.3E-19 126.9 21.2 165 37-220 4-186 (208)
197 3qky_A Outer membrane assembly 99.7 8.1E-15 2.8E-19 132.3 21.1 181 71-260 11-224 (261)
198 2zgd_A 3 repeat synthetic anky 99.7 4.5E-16 1.5E-20 120.3 10.1 90 332-437 20-109 (110)
199 4ga2_A E3 SUMO-protein ligase 99.7 5.6E-16 1.9E-20 127.2 11.1 147 80-246 2-149 (150)
200 2pzi_A Probable serine/threoni 99.6 1.4E-15 4.8E-20 156.3 15.8 196 48-264 402-602 (681)
201 2yhc_A BAMD, UPF0169 lipoprote 99.6 1E-13 3.5E-18 122.1 24.0 177 75-259 4-212 (225)
202 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.2E-15 2.1E-19 133.8 15.0 226 3-254 43-269 (275)
203 3urz_A Uncharacterized protein 99.6 3.9E-14 1.3E-18 123.1 17.8 165 76-260 5-186 (208)
204 4b4t_Q 26S proteasome regulato 99.6 1.4E-13 4.9E-18 133.8 22.3 193 33-227 51-252 (434)
205 4gcn_A Protein STI-1; structur 99.6 4.8E-14 1.7E-18 111.9 15.5 115 32-151 3-118 (127)
206 2ond_A Cleavage stimulation fa 99.6 7.7E-14 2.6E-18 129.2 19.1 210 33-261 46-271 (308)
207 3rjv_A Putative SEL1 repeat pr 99.6 9.2E-14 3.1E-18 121.1 18.2 163 36-220 17-197 (212)
208 3rjv_A Putative SEL1 repeat pr 99.6 1.7E-13 5.9E-18 119.3 19.3 178 54-261 3-198 (212)
209 3mkr_A Coatomer subunit epsilo 99.5 4.1E-13 1.4E-17 123.0 20.4 198 35-260 32-229 (291)
210 2xm6_A Protein corresponding t 99.5 6.2E-13 2.1E-17 131.6 23.1 189 37-258 75-286 (490)
211 4gco_A Protein STI-1; structur 99.5 9.7E-14 3.3E-18 109.9 13.7 116 112-240 9-124 (126)
212 4gco_A Protein STI-1; structur 99.5 8.8E-14 3E-18 110.1 13.1 102 34-146 10-111 (126)
213 2xm6_A Protein corresponding t 99.5 1.3E-12 4.6E-17 129.2 23.0 191 36-259 38-251 (490)
214 2ond_A Cleavage stimulation fa 99.5 1.2E-12 4.2E-17 121.1 20.3 184 54-259 33-231 (308)
215 1p5q_A FKBP52, FK506-binding p 99.5 5.5E-14 1.9E-18 131.7 10.7 159 49-219 125-293 (336)
216 4gcn_A Protein STI-1; structur 99.5 3.9E-13 1.3E-17 106.6 14.1 105 113-220 5-112 (127)
217 2vsy_A XCC0866; transferase, g 99.5 3.1E-13 1E-17 136.4 16.4 155 50-222 2-159 (568)
218 2pzi_A Probable serine/threoni 99.5 9.5E-14 3.3E-18 142.6 12.7 171 35-224 431-602 (681)
219 1p5q_A FKBP52, FK506-binding p 99.5 5.6E-14 1.9E-18 131.6 9.7 190 47-259 75-293 (336)
220 2r5s_A Uncharacterized protein 99.5 3.5E-13 1.2E-17 113.6 12.7 166 38-220 7-173 (176)
221 1a17_A Serine/threonine protei 99.5 2.7E-12 9.2E-17 106.6 18.0 138 34-182 10-147 (166)
222 3n71_A Histone lysine methyltr 99.5 1.9E-12 6.5E-17 126.1 19.4 141 120-261 313-465 (490)
223 3qou_A Protein YBBN; thioredox 99.5 1E-12 3.5E-17 120.2 16.1 169 36-220 116-284 (287)
224 2vsy_A XCC0866; transferase, g 99.5 8.1E-13 2.8E-17 133.3 16.5 154 90-262 3-159 (568)
225 3qou_A Protein YBBN; thioredox 99.5 3.2E-12 1.1E-16 116.9 18.8 170 72-259 114-283 (287)
226 3n71_A Histone lysine methyltr 99.5 2.5E-12 8.7E-17 125.2 18.8 146 38-184 310-467 (490)
227 3gyz_A Chaperone protein IPGC; 99.5 4.3E-13 1.5E-17 109.4 11.0 103 112-221 32-134 (151)
228 4f3v_A ESX-1 secretion system 99.5 2.6E-12 9E-17 114.4 16.8 208 37-260 7-237 (282)
229 2fo7_A Synthetic consensus TPR 99.4 4.1E-12 1.4E-16 101.2 16.4 131 38-181 2-132 (136)
230 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.1E-12 3.9E-17 114.0 14.1 135 116-260 6-150 (213)
231 3gyz_A Chaperone protein IPGC; 99.4 3.1E-13 1.1E-17 110.2 9.5 104 71-183 32-135 (151)
232 2r5s_A Uncharacterized protein 99.4 1.4E-12 4.7E-17 110.0 13.5 164 77-259 8-172 (176)
233 3upv_A Heat shock protein STI1 99.4 3.5E-12 1.2E-16 100.8 14.7 122 115-243 3-124 (126)
234 1a17_A Serine/threonine protei 99.4 7.7E-12 2.6E-16 103.8 16.8 143 113-266 10-152 (166)
235 3e4b_A ALGK; tetratricopeptide 99.4 1.1E-11 3.8E-16 120.9 20.3 186 39-259 178-386 (452)
236 1hh8_A P67PHOX, NCF-2, neutrop 99.4 5.8E-12 2E-16 109.5 15.9 135 77-224 8-154 (213)
237 2fbn_A 70 kDa peptidylprolyl i 99.4 5.6E-13 1.9E-17 114.8 9.0 158 42-211 9-176 (198)
238 2fo7_A Synthetic consensus TPR 99.4 1.1E-11 3.7E-16 98.6 15.1 131 117-260 2-132 (136)
239 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 1E-12 3.5E-17 128.4 9.5 152 49-212 246-406 (457)
240 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 9.5E-13 3.2E-17 128.6 8.4 149 88-253 246-407 (457)
241 2fbn_A 70 kDa peptidylprolyl i 99.4 2.1E-12 7.1E-17 111.1 9.7 149 86-251 14-176 (198)
242 2vgx_A Chaperone SYCD; alterna 99.4 5E-12 1.7E-16 103.1 11.4 114 97-223 8-121 (148)
243 2hr2_A Hypothetical protein; a 99.3 1.8E-11 6.2E-16 98.6 14.0 108 74-184 10-134 (159)
244 3e4b_A ALGK; tetratricopeptide 99.3 4.3E-11 1.5E-15 116.8 19.2 191 37-259 141-350 (452)
245 2hr2_A Hypothetical protein; a 99.3 3E-11 1E-15 97.3 14.8 109 115-224 10-135 (159)
246 2ooe_A Cleavage stimulation fa 99.3 3.5E-11 1.2E-15 120.2 18.8 209 35-262 270-494 (530)
247 1xi4_A Clathrin heavy chain; a 99.3 8.8E-11 3E-15 123.4 22.1 186 37-260 1105-1309(1630)
248 2c2l_A CHIP, carboxy terminus 99.3 6.9E-12 2.4E-16 114.2 12.2 195 37-259 4-198 (281)
249 2vgx_A Chaperone SYCD; alterna 99.3 9.5E-12 3.3E-16 101.4 11.3 115 58-185 8-122 (148)
250 3upv_A Heat shock protein STI1 99.3 4E-11 1.4E-15 94.7 14.6 97 76-181 5-101 (126)
251 2lni_A Stress-induced-phosphop 99.3 2.9E-11 9.8E-16 96.1 13.8 122 112-246 12-133 (133)
252 3sz7_A HSC70 cochaperone (SGT) 99.3 4.8E-11 1.6E-15 99.1 15.6 104 36-150 10-113 (164)
253 3rkv_A Putative peptidylprolyl 99.3 2.3E-11 8E-16 100.8 13.0 103 113-220 8-126 (162)
254 3rkv_A Putative peptidylprolyl 99.3 2.5E-11 8.4E-16 100.7 12.7 126 73-204 9-146 (162)
255 2lni_A Stress-induced-phosphop 99.3 6.2E-11 2.1E-15 94.1 14.2 122 71-205 12-133 (133)
256 2vyi_A SGTA protein; chaperone 99.3 6E-11 2.1E-15 93.7 13.9 123 112-247 8-130 (131)
257 3dra_A Protein farnesyltransfe 99.3 1.3E-10 4.3E-15 106.0 17.4 209 32-259 62-286 (306)
258 3sz7_A HSC70 cochaperone (SGT) 99.3 7.9E-11 2.7E-15 97.8 14.8 106 111-223 6-111 (164)
259 2vyi_A SGTA protein; chaperone 99.3 1.3E-10 4.4E-15 91.8 14.8 117 76-205 13-129 (131)
260 2e2e_A Formate-dependent nitri 99.3 4.5E-11 1.6E-15 100.6 12.7 126 47-185 20-148 (177)
261 2c2l_A CHIP, carboxy terminus 99.3 2.1E-11 7.3E-16 111.0 10.9 102 74-184 3-104 (281)
262 2xcb_A PCRH, regulatory protei 99.3 2E-10 6.7E-15 92.8 15.2 106 112-224 14-119 (142)
263 1elr_A TPR2A-domain of HOP; HO 99.2 2.9E-10 9.8E-15 89.8 15.6 123 36-166 3-126 (131)
264 1wao_1 Serine/threonine protei 99.2 8.2E-12 2.8E-16 122.5 7.8 176 36-225 5-202 (477)
265 2ooe_A Cleavage stimulation fa 99.2 2.7E-10 9.1E-15 113.8 18.7 184 54-259 255-453 (530)
266 1ihg_A Cyclophilin 40; ppiase 99.2 1.2E-10 4E-15 110.3 14.6 143 34-212 220-362 (370)
267 2e2e_A Formate-dependent nitri 99.2 7.6E-11 2.6E-15 99.2 11.8 121 89-222 23-146 (177)
268 3q49_B STIP1 homology and U bo 99.2 1.7E-10 6E-15 92.3 13.2 101 116-223 9-109 (137)
269 2xcb_A PCRH, regulatory protei 99.2 2E-10 6.7E-15 92.8 13.4 99 37-146 18-116 (142)
270 1ihg_A Cyclophilin 40; ppiase 99.2 1.5E-10 5E-15 109.5 13.7 128 114-252 221-362 (370)
271 1na0_A Designed protein CTPR3; 99.2 3.4E-10 1.2E-14 88.5 13.5 118 115-245 8-125 (125)
272 1xi4_A Clathrin heavy chain; a 99.2 9.6E-10 3.3E-14 115.7 20.0 172 43-260 1055-1250(1630)
273 1elr_A TPR2A-domain of HOP; HO 99.2 4.1E-10 1.4E-14 88.9 13.5 103 115-220 3-108 (131)
274 1na0_A Designed protein CTPR3; 99.2 9E-10 3.1E-14 86.0 14.9 116 75-203 9-124 (125)
275 3q49_B STIP1 homology and U bo 99.2 6.3E-10 2.2E-14 88.9 14.2 98 75-181 9-106 (137)
276 3qwp_A SET and MYND domain-con 99.2 8.3E-10 2.8E-14 106.0 17.3 123 121-244 292-426 (429)
277 2if4_A ATFKBP42; FKBP-like, al 99.2 2.1E-10 7.1E-15 107.3 12.5 158 33-224 175-332 (338)
278 3qww_A SET and MYND domain-con 99.2 7.3E-10 2.5E-14 106.1 16.4 113 125-238 307-431 (433)
279 4f3v_A ESX-1 secretion system 99.2 8E-11 2.8E-15 104.8 8.9 206 4-220 8-237 (282)
280 1b89_A Protein (clathrin heavy 99.1 3.3E-11 1.1E-15 113.6 6.3 181 38-259 33-235 (449)
281 1wao_1 Serine/threonine protei 99.1 8.6E-12 2.9E-16 122.3 2.1 135 115-262 5-141 (477)
282 1elw_A TPR1-domain of HOP; HOP 99.1 2.2E-09 7.4E-14 82.9 15.1 99 37-146 4-102 (118)
283 3qww_A SET and MYND domain-con 99.1 4.5E-10 1.6E-14 107.6 13.4 110 88-197 310-431 (433)
284 1elw_A TPR1-domain of HOP; HOP 99.1 7.2E-10 2.5E-14 85.6 12.3 98 116-220 4-101 (118)
285 1hxi_A PEX5, peroxisome target 99.1 2.9E-10 1E-14 88.9 9.7 97 118-221 19-115 (121)
286 3qwp_A SET and MYND domain-con 99.1 8.2E-10 2.8E-14 106.1 14.5 121 81-203 294-426 (429)
287 2dba_A Smooth muscle cell asso 99.1 8.2E-10 2.8E-14 89.4 12.3 102 114-220 26-128 (148)
288 1hxi_A PEX5, peroxisome target 99.1 6E-10 2.1E-14 87.1 11.0 93 41-144 21-113 (121)
289 2xev_A YBGF; tetratricopeptide 99.1 1.1E-09 3.8E-14 86.4 12.7 116 118-238 4-120 (129)
290 2xev_A YBGF; tetratricopeptide 99.1 2.1E-09 7.3E-14 84.8 14.2 105 39-148 4-108 (129)
291 2if4_A ATFKBP42; FKBP-like, al 99.1 1.8E-10 6.2E-15 107.7 8.2 136 113-259 176-327 (338)
292 2dba_A Smooth muscle cell asso 99.1 2.8E-09 9.6E-14 86.2 13.3 87 90-181 42-128 (148)
293 2kck_A TPR repeat; tetratricop 99.0 1.6E-09 5.5E-14 82.8 10.2 101 38-147 7-108 (112)
294 3q7a_A Farnesyltransferase alp 99.0 6.9E-08 2.4E-12 88.8 22.0 206 37-259 54-330 (349)
295 2kck_A TPR repeat; tetratricop 99.0 1.4E-09 4.7E-14 83.2 9.0 102 75-183 6-108 (112)
296 3k9i_A BH0479 protein; putativ 99.0 1E-09 3.5E-14 85.2 8.1 92 89-185 3-94 (117)
297 3k9i_A BH0479 protein; putativ 99.0 9.6E-10 3.3E-14 85.4 7.7 89 128-221 2-91 (117)
298 1b89_A Protein (clathrin heavy 99.0 3.2E-10 1.1E-14 106.9 5.6 190 38-254 62-305 (449)
299 1zu2_A Mitochondrial import re 99.0 2.1E-09 7.3E-14 86.3 9.5 88 49-147 14-122 (158)
300 3dss_A Geranylgeranyl transfer 99.0 1.3E-07 4.4E-12 86.7 22.3 201 36-260 63-304 (331)
301 1dce_A Protein (RAB geranylger 99.0 9E-09 3.1E-13 102.7 15.9 176 50-249 42-244 (567)
302 1zu2_A Mitochondrial import re 99.0 3.9E-09 1.3E-13 84.8 10.5 90 87-184 13-123 (158)
303 2l6j_A TPR repeat-containing p 98.9 8.6E-10 2.9E-14 84.5 6.0 100 37-141 4-103 (111)
304 3dra_A Protein farnesyltransfe 98.9 8.3E-08 2.8E-12 87.4 19.7 189 45-256 41-246 (306)
305 3dss_A Geranylgeranyl transfer 98.9 1E-07 3.6E-12 87.3 19.5 154 49-220 41-222 (331)
306 2kat_A Uncharacterized protein 98.9 1.7E-08 5.8E-13 77.9 11.5 88 133-227 2-89 (115)
307 3mv2_B Coatomer subunit epsilo 98.9 1.2E-07 4E-12 85.6 18.1 173 75-260 100-282 (310)
308 2l6j_A TPR repeat-containing p 98.8 4.8E-09 1.6E-13 80.2 6.8 93 153-250 5-97 (111)
309 1klx_A Cysteine rich protein B 98.8 6E-08 2E-12 77.6 12.9 110 51-181 9-126 (138)
310 1na3_A Designed protein CTPR2; 98.8 3.3E-08 1.1E-12 72.3 10.1 86 113-204 6-91 (91)
311 3ma5_A Tetratricopeptide repea 98.8 3.8E-08 1.3E-12 73.8 10.6 76 149-229 4-79 (100)
312 1klx_A Cysteine rich protein B 98.8 4.8E-08 1.6E-12 78.1 11.6 110 90-220 9-126 (138)
313 3mv2_B Coatomer subunit epsilo 98.8 3.8E-07 1.3E-11 82.3 18.2 174 38-220 101-282 (310)
314 1dce_A Protein (RAB geranylger 98.7 7.2E-08 2.5E-12 96.2 13.2 158 34-209 60-244 (567)
315 2kat_A Uncharacterized protein 98.7 1E-07 3.4E-12 73.4 11.0 80 95-182 4-83 (115)
316 1na3_A Designed protein CTPR2; 98.7 8.8E-08 3E-12 70.0 9.9 85 150-245 7-91 (91)
317 3ma5_A Tetratricopeptide repea 98.6 2.9E-07 9.9E-12 68.9 10.3 72 36-112 6-77 (100)
318 4e6h_A MRNA 3'-END-processing 98.5 1.3E-05 4.4E-10 81.2 22.0 211 37-261 343-571 (679)
319 3q7a_A Farnesyltransferase alp 98.5 5.7E-06 1.9E-10 76.1 16.8 166 75-260 54-237 (349)
320 2kc7_A BFR218_protein; tetratr 98.4 4.5E-07 1.5E-11 67.5 6.0 87 120-221 4-91 (99)
321 3txn_A 26S proteasome regulato 98.4 0.00013 4.4E-09 68.2 23.6 210 35-246 17-235 (394)
322 2kc7_A BFR218_protein; tetratr 98.3 1.3E-06 4.4E-11 64.9 7.1 60 156-220 4-64 (99)
323 3ly7_A Transcriptional activat 98.3 1.8E-05 6.3E-10 72.7 15.9 137 38-181 197-339 (372)
324 2v5f_A Prolyl 4-hydroxylase su 98.2 7.3E-06 2.5E-10 61.6 9.8 66 118-183 7-77 (104)
325 3txn_A 26S proteasome regulato 98.2 0.00041 1.4E-08 64.8 22.5 181 76-259 20-209 (394)
326 2v5f_A Prolyl 4-hydroxylase su 98.2 1.2E-05 4.2E-10 60.3 10.1 67 153-220 6-75 (104)
327 4e6h_A MRNA 3'-END-processing 98.1 0.0001 3.5E-09 74.7 18.2 187 53-259 325-532 (679)
328 3u64_A Protein TP_0956; tetrat 98.0 0.00043 1.5E-08 61.0 17.0 90 131-224 178-273 (301)
329 3ly7_A Transcriptional activat 98.0 0.00014 4.7E-09 66.9 14.4 120 89-220 212-339 (372)
330 3ffl_A Anaphase-promoting comp 97.8 0.00041 1.4E-08 55.3 12.1 105 34-140 17-146 (167)
331 4b4t_P 26S proteasome regulato 97.8 0.021 7.2E-07 54.8 26.4 209 50-263 29-250 (445)
332 4g26_A Pentatricopeptide repea 97.8 0.0018 6.1E-08 63.4 19.2 165 40-218 29-202 (501)
333 4g26_A Pentatricopeptide repea 97.7 0.0028 9.6E-08 62.0 20.2 129 86-220 36-169 (501)
334 3ffl_A Anaphase-promoting comp 97.7 0.00084 2.9E-08 53.5 12.9 101 155-256 23-147 (167)
335 1pc2_A Mitochondria fission pr 97.7 0.00034 1.1E-08 55.5 10.5 86 92-183 14-102 (152)
336 3bee_A Putative YFRE protein; 97.6 0.00047 1.6E-08 50.2 9.5 66 117-184 7-75 (93)
337 1pc2_A Mitochondria fission pr 97.6 0.0011 3.6E-08 52.6 11.7 94 51-153 12-108 (152)
338 4b4t_P 26S proteasome regulato 97.6 0.023 7.9E-07 54.5 23.5 197 33-233 52-260 (445)
339 3bee_A Putative YFRE protein; 97.5 0.00031 1E-08 51.2 7.4 68 150-222 4-74 (93)
340 2uy1_A Cleavage stimulation fa 97.4 0.026 8.8E-07 55.1 21.7 182 53-259 195-412 (493)
341 3u64_A Protein TP_0956; tetrat 97.3 0.0014 4.6E-08 57.9 10.0 89 91-184 178-272 (301)
342 4b4t_R RPN7, 26S proteasome re 96.9 0.0085 2.9E-07 57.3 12.2 109 36-146 130-238 (429)
343 4b4t_S RPN3, 26S proteasome re 96.8 0.096 3.3E-06 50.3 18.2 213 45-259 144-389 (523)
344 4b4t_R RPN7, 26S proteasome re 96.6 0.0088 3E-07 57.2 9.9 106 114-220 129-237 (429)
345 1nzn_A CGI-135 protein, fissio 96.5 0.055 1.9E-06 41.1 11.8 88 91-184 16-106 (126)
346 4h7y_A Dual specificity protei 96.2 0.098 3.4E-06 40.8 11.8 89 93-184 36-126 (161)
347 2uy1_A Cleavage stimulation fa 95.9 0.24 8.1E-06 48.2 15.9 147 93-257 196-380 (493)
348 1nzn_A CGI-135 protein, fissio 95.8 0.18 6.1E-06 38.3 11.3 95 52-155 16-113 (126)
349 3mkq_A Coatomer beta'-subunit; 95.5 0.45 1.5E-05 49.4 17.6 25 118-142 683-707 (814)
350 4h7y_A Dual specificity protei 95.5 0.24 8.2E-06 38.7 11.2 82 133-220 36-123 (161)
351 4b4t_S RPN3, 26S proteasome re 95.0 0.039 1.3E-06 52.9 6.6 166 81-247 141-327 (523)
352 4gns_B Protein CSD3, chitin bi 94.7 0.56 1.9E-05 47.7 14.4 123 128-257 260-397 (754)
353 4gns_B Protein CSD3, chitin bi 93.7 1.3 4.5E-05 45.0 14.8 119 52-177 264-396 (754)
354 3o48_A Mitochondria fission 1 93.7 0.36 1.2E-05 36.8 8.1 67 117-184 41-110 (134)
355 1y8m_A FIS1; mitochondria, unk 93.2 0.48 1.6E-05 36.7 8.2 68 116-184 39-109 (144)
356 3kae_A CDC27, possible protein 92.8 2.2 7.4E-05 34.0 11.4 92 121-220 38-143 (242)
357 2ff4_A Probable regulatory pro 92.2 2.7 9.1E-05 39.3 13.9 72 191-269 172-244 (388)
358 1ya0_A SMG-7 transcript varian 92.2 0.51 1.7E-05 45.6 9.0 80 117-202 153-232 (497)
359 3o48_A Mitochondria fission 1 92.1 1.6 5.3E-05 33.3 9.6 60 91-155 58-117 (134)
360 3mkq_A Coatomer beta'-subunit; 91.8 2.5 8.4E-05 43.7 14.5 48 124-178 660-707 (814)
361 3mkq_B Coatomer subunit alpha; 91.6 2.2 7.5E-05 34.5 10.7 99 88-217 17-115 (177)
362 3mkq_B Coatomer subunit alpha; 91.5 4.7 0.00016 32.6 13.6 50 124-180 13-62 (177)
363 1ya0_A SMG-7 transcript varian 91.4 0.51 1.7E-05 45.6 8.0 81 36-127 151-231 (497)
364 4fhn_B Nucleoporin NUP120; pro 90.9 1.3 4.5E-05 48.0 11.4 94 120-214 846-961 (1139)
365 4fhn_B Nucleoporin NUP120; pro 89.8 1.8 6.2E-05 46.9 11.5 100 154-255 844-962 (1139)
366 1y8m_A FIS1; mitochondria, unk 88.8 6.9 0.00023 30.2 11.5 65 152-220 39-106 (144)
367 2ff4_A Probable regulatory pro 88.4 5.6 0.00019 37.1 12.4 68 153-225 172-240 (388)
368 3spa_A Mtrpol, DNA-directed RN 88.0 5.9 0.0002 41.6 12.9 100 75-178 127-227 (1134)
369 3spa_A Mtrpol, DNA-directed RN 87.9 2.3 7.9E-05 44.6 9.9 103 113-219 124-229 (1134)
370 2wpv_A GET4, UPF0363 protein Y 87.0 16 0.00056 32.6 22.5 130 30-176 26-158 (312)
371 3re2_A Predicted protein; meni 84.1 6.3 0.00022 35.4 9.3 67 171-238 276-343 (472)
372 2o8p_A 14-3-3 domain containin 83.5 6.9 0.00024 32.9 9.0 70 35-106 125-198 (227)
373 3u84_A Menin; MLL, JUND, ledgf 83.3 7.4 0.00025 35.7 9.5 111 112-240 253-367 (550)
374 4b4t_O 26S proteasome regulato 81.4 27 0.00091 32.5 13.4 101 159-260 83-198 (393)
375 4gq2_M Nucleoporin NUP120; bet 80.4 11 0.00036 40.0 11.4 89 155-245 843-950 (950)
376 4b4t_O 26S proteasome regulato 80.3 37 0.0013 31.5 16.5 99 123-222 83-200 (393)
377 3kae_A CDC27, possible protein 78.9 23 0.00079 28.3 18.5 96 40-145 36-143 (242)
378 4gq4_A Menin; tumor suppressor 76.2 11 0.00038 34.7 8.4 108 112-237 238-349 (489)
379 2wvi_A Mitotic checkpoint seri 76.2 27 0.00093 27.7 10.0 81 96-182 43-126 (164)
380 2cpt_A SKD1 protein, vacuolar 75.8 22 0.00075 26.4 9.9 52 201-265 29-84 (117)
381 3esl_A Checkpoint serine/threo 74.9 34 0.0012 28.2 15.6 86 97-183 58-146 (202)
382 4a1g_A Mitotic checkpoint seri 74.6 17 0.00058 28.4 8.2 81 96-182 48-131 (152)
383 4ady_A RPN2, 26S proteasome re 74.1 69 0.0023 33.5 14.7 207 37-258 376-587 (963)
384 4gq2_M Nucleoporin NUP120; bet 72.5 33 0.0011 36.2 12.4 82 120-201 844-947 (950)
385 3t5v_B Nuclear mRNA export pro 70.7 25 0.00085 33.3 10.0 68 154-223 178-253 (455)
386 3ubw_A 14-3-3E, 14-3-3 protein 69.5 54 0.0018 28.2 20.5 52 169-221 173-229 (261)
387 3iqu_A 14-3-3 protein sigma; s 69.3 52 0.0018 27.9 18.5 172 40-221 11-206 (236)
388 2crb_A Nuclear receptor bindin 68.6 15 0.0005 25.7 5.7 29 190-219 15-43 (97)
389 1o9d_A 14-3-3-like protein C; 66.8 62 0.0021 27.9 20.5 51 169-220 152-207 (260)
390 2w2u_A Hypothetical P60 katani 66.2 13 0.00046 25.6 5.3 32 36-67 18-49 (83)
391 2crb_A Nuclear receptor bindin 65.9 11 0.00037 26.3 4.6 33 35-67 13-45 (97)
392 3re2_A Predicted protein; meni 64.1 56 0.0019 29.5 9.9 69 116-184 255-328 (472)
393 1qsa_A Protein (soluble lytic 64.1 87 0.003 31.1 12.8 119 90-218 228-346 (618)
394 3uzd_A 14-3-3 protein gamma; s 62.6 73 0.0025 27.2 20.0 52 169-221 148-204 (248)
395 2rpa_A Katanin P60 ATPase-cont 62.5 19 0.00064 24.5 5.3 28 155-182 15-42 (78)
396 2o8p_A 14-3-3 domain containin 60.0 77 0.0026 26.6 21.7 168 42-221 11-198 (227)
397 2v6y_A AAA family ATPase, P60 59.7 18 0.00063 24.8 5.1 31 37-67 11-41 (83)
398 2w2u_A Hypothetical P60 katani 59.5 15 0.00051 25.3 4.6 17 203-220 32-48 (83)
399 2ijq_A Hypothetical protein; s 58.9 56 0.0019 25.8 8.3 69 156-225 36-109 (161)
400 3t5x_A PCI domain-containing p 57.5 31 0.0011 28.5 7.1 31 152-182 14-44 (203)
401 3t5v_B Nuclear mRNA export pro 57.5 1.3E+02 0.0044 28.4 18.2 155 90-246 140-330 (455)
402 2v6y_A AAA family ATPase, P60 56.0 18 0.00062 24.9 4.6 20 202-222 23-42 (83)
403 2br9_A 14-3-3E, 14-3-3 protein 55.9 93 0.0032 26.3 19.1 52 169-221 147-203 (234)
404 2npm_A 14-3-3 domain containin 55.4 1E+02 0.0034 26.5 21.1 52 169-221 173-228 (260)
405 3rau_A Tyrosine-protein phosph 54.6 1.3E+02 0.0044 27.5 14.5 146 28-184 108-284 (363)
406 4aez_C MAD3, mitotic spindle c 53.0 1E+02 0.0034 25.8 11.4 81 96-182 97-180 (223)
407 3ax2_A Mitochondrial import re 53.0 38 0.0013 22.6 5.5 34 39-73 19-52 (73)
408 2cwy_A Hypothetical protein TT 51.1 47 0.0016 23.4 6.1 65 158-225 7-73 (94)
409 2wm9_A Dedicator of cytokinesi 50.6 1E+02 0.0035 28.9 10.3 48 197-244 94-141 (428)
410 3u84_A Menin; MLL, JUND, ledgf 50.4 59 0.002 30.0 7.9 57 55-112 297-354 (550)
411 3ax2_A Mitochondrial import re 48.0 21 0.00072 23.8 3.6 30 155-184 20-49 (73)
412 3lpz_A GET4 (YOR164C homolog); 47.5 1.6E+02 0.0054 26.5 22.3 147 34-180 32-215 (336)
413 1o9d_A 14-3-3-like protein C; 47.1 1.4E+02 0.0047 25.7 19.8 53 207-259 151-206 (260)
414 3efz_A 14-3-3 protein; 14-3-3, 47.0 1.4E+02 0.0048 25.7 10.8 53 53-105 168-226 (268)
415 3t5x_A PCI domain-containing p 45.9 60 0.002 26.8 7.0 59 187-247 11-69 (203)
416 4a5x_A MITD1, MIT domain-conta 45.4 73 0.0025 22.0 10.1 20 201-221 27-46 (86)
417 2wm9_A Dedicator of cytokinesi 44.7 1.1E+02 0.0039 28.5 9.6 32 34-65 8-39 (428)
418 2wb7_A PT26-6P; extra chromoso 44.4 95 0.0032 29.4 8.5 35 168-205 455-489 (526)
419 2wpv_A GET4, UPF0363 protein Y 44.3 1.7E+02 0.0058 26.0 23.5 131 7-140 24-158 (312)
420 1om2_A Protein (mitochondrial 44.3 48 0.0016 23.4 5.2 29 38-66 21-49 (95)
421 3lpz_A GET4 (YOR164C homolog); 43.2 1.9E+02 0.0063 26.0 22.6 89 172-261 115-217 (336)
422 1zb1_A BRO1 protein; AIP1, BRO 43.0 2E+02 0.0069 26.4 12.3 33 190-223 257-289 (392)
423 1om2_A Protein (mitochondrial 42.7 30 0.001 24.5 3.9 29 155-183 23-51 (95)
424 4a5x_A MITD1, MIT domain-conta 41.4 85 0.0029 21.6 8.5 32 36-67 15-46 (86)
425 2cpt_A SKD1 protein, vacuolar 41.0 1.1E+02 0.0036 22.6 8.4 32 36-67 17-48 (117)
426 1wfd_A Hypothetical protein 15 40.9 91 0.0031 21.8 8.5 32 36-67 14-45 (93)
427 2yin_A DOCK2, dedicator of cyt 40.0 2.4E+02 0.0082 26.4 11.8 104 24-128 22-145 (436)
428 4aez_C MAD3, mitotic spindle c 39.5 1.7E+02 0.0057 24.5 12.1 63 149-220 117-179 (223)
429 4gq4_A Menin; tumor suppressor 39.4 85 0.0029 29.0 7.2 54 55-109 282-336 (489)
430 3ubw_A 14-3-3E, 14-3-3 protein 38.7 1.9E+02 0.0064 24.8 20.5 52 208-259 173-227 (261)
431 2wvi_A Mitotic checkpoint seri 38.7 1.4E+02 0.0049 23.5 9.4 30 189-219 95-124 (164)
432 2npm_A 14-3-3 domain containin 37.3 2E+02 0.0068 24.7 19.4 53 207-259 172-226 (260)
433 2br9_A 14-3-3E, 14-3-3 protein 36.9 1.9E+02 0.0065 24.4 21.1 53 207-259 146-201 (234)
434 1qsa_A Protein (soluble lytic 34.0 3.6E+02 0.012 26.7 13.9 130 41-180 218-347 (618)
435 3mv2_A Coatomer subunit alpha; 33.9 2.6E+02 0.0087 24.9 13.0 28 40-67 117-144 (325)
436 2v6x_A Vacuolar protein sortin 33.8 1.1E+02 0.0038 20.8 8.5 32 36-67 12-43 (85)
437 4a1g_A Mitotic checkpoint seri 33.2 73 0.0025 24.8 5.2 47 171-220 84-130 (152)
438 2v6x_A Vacuolar protein sortin 33.2 1.1E+02 0.0039 20.7 10.0 20 201-221 24-43 (85)
439 2ijq_A Hypothetical protein; s 31.5 1.9E+02 0.0065 22.7 7.9 64 121-184 37-107 (161)
440 2ynq_A ESSB; membrane protein, 30.1 2E+02 0.0068 22.5 7.3 78 86-176 19-97 (161)
441 2oo2_A Hypothetical protein AF 29.9 76 0.0026 21.9 4.2 43 98-140 17-59 (86)
442 1wfd_A Hypothetical protein 15 29.4 1.5E+02 0.005 20.7 10.2 21 201-222 26-46 (93)
443 3esl_A Checkpoint serine/threo 29.2 2.4E+02 0.0081 23.1 14.0 69 148-220 76-144 (202)
444 3iqu_A 14-3-3 protein sigma; s 28.4 2.7E+02 0.0092 23.5 19.2 52 208-259 150-204 (236)
445 2a9u_A Ubiquitin carboxyl-term 28.2 2E+02 0.007 22.0 9.4 27 155-181 45-71 (144)
446 2cwy_A Hypothetical protein TT 27.2 1.6E+02 0.0056 20.6 6.2 64 43-110 7-73 (94)
447 2dl1_A Spartin; SPG20, MIT, st 26.8 90 0.0031 22.9 4.3 15 167-181 18-32 (116)
448 2dl1_A Spartin; SPG20, MIT, st 26.5 1.1E+02 0.0036 22.6 4.7 18 164-181 34-51 (116)
449 2rpa_A Katanin P60 ATPase-cont 25.9 1.6E+02 0.0053 19.9 7.9 29 193-222 15-43 (78)
450 3efz_A 14-3-3 protein; 14-3-3, 25.4 3.3E+02 0.011 23.5 15.9 52 168-220 168-226 (268)
451 3r9m_A BRO1 domain-containing 24.8 4E+02 0.014 24.3 15.0 38 30-67 107-156 (376)
452 1wy6_A Hypothetical protein ST 24.2 2.5E+02 0.0084 21.7 6.6 29 190-219 125-153 (172)
453 3myv_A SUSD superfamily protei 23.8 1.4E+02 0.0048 28.1 6.5 32 150-181 188-219 (454)
454 1zbp_A Hypothetical protein VP 23.3 3.6E+02 0.012 23.3 11.9 120 46-183 6-131 (273)
455 1wy6_A Hypothetical protein ST 22.6 2.7E+02 0.0091 21.5 6.7 54 126-181 101-154 (172)
456 3snx_A SUSD homolog, putative 22.6 1.6E+02 0.0055 27.8 6.7 31 151-181 190-220 (460)
457 4ady_A RPN2, 26S proteasome re 22.6 6.9E+02 0.024 26.2 19.3 35 72-107 67-101 (963)
458 1zb1_A BRO1 protein; AIP1, BRO 22.5 4.5E+02 0.015 24.1 11.5 36 32-67 118-159 (392)
459 3myv_A SUSD superfamily protei 21.7 1.7E+02 0.0059 27.5 6.7 33 187-220 187-219 (454)
460 3eab_A Spastin; spastin, MIT, 21.3 70 0.0024 22.2 2.7 13 168-180 13-25 (89)
461 3mcx_A SUSD superfamily protei 21.1 1.8E+02 0.0063 27.5 6.8 33 187-220 199-231 (477)
462 3lew_A SUSD-like carbohydrate 21.1 1.7E+02 0.0057 28.0 6.5 33 149-181 200-232 (495)
463 3uzd_A 14-3-3 protein gamma; s 20.7 3.9E+02 0.013 22.7 20.6 53 207-259 147-202 (248)
464 3kez_A Putative sugar binding 20.7 1.6E+02 0.0055 27.8 6.3 30 151-180 195-224 (461)
465 3kez_A Putative sugar binding 20.1 2E+02 0.0067 27.2 6.7 34 186-220 192-225 (461)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=1.9e-29 Score=211.53 Aligned_cols=153 Identities=33% Similarity=0.422 Sum_probs=139.0
Q ss_pred hhhccCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchH
Q psy875 309 RTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETA 388 (480)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 388 (480)
.....|+......+...+.++|..+..+.++++.|+..++.+++++|++.|++++..+ ..|.||
T Consensus 10 ~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d----------------~~g~Tp 73 (169)
T 4gpm_A 10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD----------------SDGRTP 73 (169)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTSCCH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhc----------------cCCCCH
Confidence 4566777777777777889999999999999999999999999999999999998754 359999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHH
Q psy875 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDI 468 (480)
Q Consensus 389 l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~ 468 (480)
||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.++
T Consensus 74 Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~~A~~~g~~~i 151 (169)
T 4gpm_A 74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN--TSDSDGRTPLDLAREHGNEEV 151 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999 669999999999999999999
Q ss_pred HHHHHHcCCCC
Q psy875 469 VQALVSAGAEV 479 (480)
Q Consensus 469 ~~~Ll~~ga~~ 479 (480)
+++|+++||++
T Consensus 152 v~~Ll~~GA~i 162 (169)
T 4gpm_A 152 VKLLEKQGGWL 162 (169)
T ss_dssp HHHHHTC----
T ss_pred HHHHHHCCCCc
Confidence 99999999997
No 2
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=1e-26 Score=194.77 Aligned_cols=125 Identities=40% Similarity=0.587 Sum_probs=118.9
Q ss_pred hHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC
Q psy875 338 SITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSA 417 (480)
Q Consensus 338 ~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~ 417 (480)
..|+.|++.|+.++|+.|+++|+|++..+ ..|.||||+|+..++.++++.|++.|++++.+|..
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d----------------~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~ 69 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASD----------------SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcC----------------CCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccC
Confidence 46889999999999999999999998764 35999999999999999999999999999999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 418 GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 418 g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 70 g~TpLh~A~~~g~~~~v~~Ll~~gadvn--~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~ 130 (169)
T 4gpm_A 70 GRTPLHHAAENGHKEVVKLLISKGADVN--AKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130 (169)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCcCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence 9999999999999999999999999999 669999999999999999999999999999985
No 3
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=6.1e-27 Score=189.79 Aligned_cols=135 Identities=26% Similarity=0.275 Sum_probs=127.0
Q ss_pred CCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHH
Q psy875 325 NDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSL 404 (480)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l 404 (480)
|+.+++..+..+.++++.|+..|+.+++++|+++|++++..+ ..|.||||+|+. |+.+++++|
T Consensus 1 G~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~-~~~~~v~~L 63 (136)
T 1d9s_A 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN----------------RFGRRPIQVMMM-GSAQVAELL 63 (136)
T ss_dssp CCCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTCCTTTTTSTT-SCHHHHHHH
T ss_pred CCCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcC----------------CCCCCHHHHHHc-CCHHHHHHH
Confidence 456788888899999999999999999999999999988653 349999999999 999999999
Q ss_pred HhcCCCCCCCCCC-CChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875 405 LKQGHPVKVQDSA-GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478 (480)
Q Consensus 405 l~~g~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 478 (480)
+++|++++.+|.. |+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..++.+++++|+++|+|
T Consensus 64 l~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--VCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC--CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999 9999999999999999999999999999 6699999999999999999999999999986
No 4
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.94 E-value=3.9e-26 Score=207.12 Aligned_cols=140 Identities=26% Similarity=0.296 Sum_probs=120.4
Q ss_pred ccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHH
Q psy875 323 KRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQ 402 (480)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~ 402 (480)
...+.++|..+..+.|||++|+..|+.++|++|++.|++++... ..|.||+|+|+..++.++++
T Consensus 73 l~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~----------------~~g~t~l~~a~~~~~~~~~~ 136 (269)
T 4b93_B 73 PASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARN----------------ADQAVPLHLACQQGHFQVVK 136 (269)
T ss_dssp --CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCC----------------TTCCCHHHHHHHHTCHHHHH
T ss_pred HHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccC----------------CCCCCccccccccChHHHHH
Confidence 34556778888888899999999999999999999998887653 34889999999999999999
Q ss_pred HHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 403 SLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 403 ~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++ .++..|.||||+|+..|+.+++++|+++|+|++
T Consensus 137 ~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~ 212 (269)
T 4b93_B 137 CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN--ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ 212 (269)
T ss_dssp HHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT--CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 9999999999988899999999999999999999999999988 558889999999999999999999999998875
No 5
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.94 E-value=7.4e-24 Score=203.44 Aligned_cols=256 Identities=11% Similarity=0.103 Sum_probs=215.3
Q ss_pred HHHhhccchhhhhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hcc-CchHHHHHHHH
Q psy875 5 IALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARN-FPEAVKTLGEI 81 (480)
Q Consensus 5 ~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~-~~~~~~~~~~l 81 (480)
+++..|.. ..++......+.+.+........+.+++.+|.+|...|++++|+.++++|++++ .++ .+..+.++.++
T Consensus 112 ~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 112 YELDQREY-LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHTTCH-HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHhcCH-HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 33333433 333333444455555556677789999999999999999999999999999997 222 45577899999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccc---c-ccHHHHHHH
Q psy875 82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL---C-KDLASCYIS 157 (480)
Q Consensus 82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~---~-~~~~~~~~~ 157 (480)
|.+|.. .|++++|+.++++|+.+.+..++....+.++.++|.+|..+|++++|+.+|++++.... . +..+.++.+
T Consensus 191 g~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 191 ATNFLD-LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHH-hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 999554 59999999999999999999988999999999999999999999999999999987421 2 566889999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q psy875 158 LAQTYKDNKQYNLAVDYFNKELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRS 236 (480)
Q Consensus 158 la~~y~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 236 (480)
+|.+|..+|++++|+.++++++++... ..+.....+..+|.++...|+ + ..+++|+...++.+..+....++..
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~-~----~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD-E----EAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC-H----HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc-H----HHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 999999999999999999999998665 334444447789999999999 7 7888999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhhccC
Q psy875 237 MKKLYKKHDKFTELEQIKTELKSLEEKLDLN 267 (480)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~~ 267 (480)
+|.+|..+|++++|..+++++.++.+++...
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~~~i~~~ 375 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVRQLIQGG 375 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTSCSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999998763
No 6
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.94 E-value=9e-26 Score=207.20 Aligned_cols=101 Identities=28% Similarity=0.370 Sum_probs=94.6
Q ss_pred cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-CChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcH
Q psy875 378 SLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSA-GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLP 456 (480)
Q Consensus 378 ~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tp 456 (480)
....+..|.||||+|+..|+.+++++|+++|++++.++.. |+||||+|+..|+.+++++|+++|++++ .+|..|.||
T Consensus 151 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tp 228 (282)
T 1oy3_D 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT--ARMYGGRTP 228 (282)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCH
T ss_pred CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc--ccccCCCCH
Confidence 3445678999999999999999999999999999999854 9999999999999999999999999999 669999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 457 LHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 457 l~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
||+|+..|+.+++++|+++|++++
T Consensus 229 L~~A~~~~~~~~v~~Ll~~ga~~~ 252 (282)
T 1oy3_D 229 LGSALLRPNPILARLLRAHGAPEP 252 (282)
T ss_dssp HHHHHTSSCHHHHHHHHHTTCCCC
T ss_pred HHHHHHcCCcHHHHHHHHcCCCcC
Confidence 999999999999999999999985
No 7
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.93 E-value=1.5e-25 Score=202.10 Aligned_cols=146 Identities=23% Similarity=0.192 Sum_probs=108.3
Q ss_pred cCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc------------------cCCCccccCCCCCchHHHHHHH
Q psy875 333 LYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL------------------ETPTTSLLEKPRGETALHVAAA 394 (480)
Q Consensus 333 ~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~------------------~~~~~~~~~~~~g~~~l~~a~~ 394 (480)
+..+.++++.|+..|+.++|++|+++|++++..+..+.+. .........+..|.||||+|+.
T Consensus 54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 133 (253)
T 1yyh_A 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133 (253)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence 3445555555555555555555555555554432211110 1111333445568999999999
Q ss_pred cCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875 395 RGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474 (480)
Q Consensus 395 ~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 474 (480)
.|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++
T Consensus 134 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 211 (253)
T 1yyh_A 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLFLAAREGSYETAKVLLD 211 (253)
T ss_dssp HTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred cChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999899999999999999999999999999998 558889999999999999999999999
Q ss_pred cCCCCC
Q psy875 475 AGAEVS 480 (480)
Q Consensus 475 ~ga~~~ 480 (480)
+|++++
T Consensus 212 ~ga~~~ 217 (253)
T 1yyh_A 212 HFANRD 217 (253)
T ss_dssp TTCCTT
T ss_pred cCCCcc
Confidence 998874
No 8
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.93 E-value=9.5e-26 Score=190.82 Aligned_cols=140 Identities=24% Similarity=0.272 Sum_probs=127.7
Q ss_pred hccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHH
Q psy875 322 IKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLV 401 (480)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~ 401 (480)
+..+...++..+..+.++++.|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.+++
T Consensus 22 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~v 85 (172)
T 3v30_A 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA----------------KERESALSLASTGGYTDIV 85 (172)
T ss_dssp HTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC----------------TTCCCHHHHHHHTTCHHHH
T ss_pred HHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhc----------------ccCCCHHHHHHHCCCHHHH
Confidence 333444467778889999999999999999999999999988654 3499999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 402 QSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 402 ~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|+++
T Consensus 86 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (172)
T 3v30_A 86 GLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT--TEADSGYTPMDLAVALGYRKVQQVIENHILKL 161 (172)
T ss_dssp HHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 56999999999999999999999999998754
No 9
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.93 E-value=1.3e-25 Score=189.00 Aligned_cols=148 Identities=24% Similarity=0.232 Sum_probs=133.4
Q ss_pred cCCccchhhhccCC-----------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875 313 KRAPRSHFLIKRND-----------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE 381 (480)
Q Consensus 313 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (480)
.|.||+|.++..+. .+++..+..+.++++.|+..|+.+++++|+++|++++..+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------------- 66 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG--------------- 66 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC---------------
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC---------------
Confidence 36677777766544 4567778889999999999999999999999999988653
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~ 461 (480)
..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+
T Consensus 67 -~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~~A~ 143 (167)
T 3v31_A 67 -KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETDSGYNSMDLAV 143 (167)
T ss_dssp -TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHH
T ss_pred -CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHH
Confidence 349999999999999999999999999999999999999999999999999999999999999 56999999999999
Q ss_pred HcCCHHHHHHHHHcCCC
Q psy875 462 NHGHTDIVQALVSAGAE 478 (480)
Q Consensus 462 ~~~~~~~~~~Ll~~ga~ 478 (480)
..|+.+++++|++++++
T Consensus 144 ~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 144 ALGYRSVQQVIESHLLK 160 (167)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHH
Confidence 99999999999998764
No 10
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.93 E-value=2.1e-25 Score=192.36 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=137.0
Q ss_pred hhhccCCccchhhhccCCC-----------cCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCc
Q psy875 309 RTNRKRAPRSHFLIKRNDK-----------DSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTT 377 (480)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~ 377 (480)
..+..|.||||+++..+.. +++..+..+.+++++|+..|+.+++++|+++|++++..+
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------- 98 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD----------- 98 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC-----------
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCC-----------
Confidence 3466799999999887654 456677789999999999999999999999999987653
Q ss_pred cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHH
Q psy875 378 SLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPL 457 (480)
Q Consensus 378 ~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl 457 (480)
..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||
T Consensus 99 -----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l 171 (192)
T 2rfm_A 99 -----FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS--ARDLTGLTAE 171 (192)
T ss_dssp -----TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHH
T ss_pred -----CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHH
Confidence 349999999999999999999999999999999999999999999999999999999999999 5699999999
Q ss_pred HHHHHcCCHHHHHHHHHcC
Q psy875 458 HEAANHGHTDIVQALVSAG 476 (480)
Q Consensus 458 ~~A~~~~~~~~~~~Ll~~g 476 (480)
|+|+..|+.+++++|+++|
T Consensus 172 ~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 172 ASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHhcc
Confidence 9999999999999999876
No 11
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.93 E-value=7.8e-25 Score=196.01 Aligned_cols=170 Identities=25% Similarity=0.269 Sum_probs=137.6
Q ss_pred hhhccCCccchhhhccCC---------------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc-
Q psy875 309 RTNRKRAPRSHFLIKRND---------------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL- 372 (480)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~- 372 (480)
..+..|.||||+|+..+. .+++..+..+.++++.|+..|+.+++++|++.|++++..+....+.
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l 83 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA 83 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence 345668888888776653 3556666777888888888888888888888888877543221110
Q ss_pred ----------------cC----CCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCChHHHHHHHcCCH
Q psy875 373 ----------------ET----PTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD-SAGWLPLHEAANHGHT 431 (480)
Q Consensus 373 ----------------~~----~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~~~~ 431 (480)
.. .......+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence 11 11344556679999999999999999999999999999988 7899999999999999
Q ss_pred HHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 432 DIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 432 ~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|++++
T Consensus 164 ~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 164 SMVQLLLQHGANVN--AQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 210 (241)
T ss_dssp HHHHHHHHTTCCTT--CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence 99999999999999 569999999999999999999999999999975
No 12
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=3.4e-25 Score=185.41 Aligned_cols=147 Identities=25% Similarity=0.256 Sum_probs=130.1
Q ss_pred cCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHH
Q psy875 313 KRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVA 392 (480)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a 392 (480)
.|+......+...+.+++..+..+.++++.|+. |+.+++++|+++|++++..+ ..|.||||+|
T Consensus 15 ~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A 77 (162)
T 1ihb_A 15 RGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKD----------------RTGFAVIHDA 77 (162)
T ss_dssp HTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHH
T ss_pred cCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCC----------------CCCCCHHHHH
Confidence 344444444455667788888899999999999 99999999999999988653 3499999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCCcHHHHHHHcCCHHHHHH
Q psy875 393 AARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD-PNDKVQDSAGWLPLHEAANHGHTDIVQA 471 (480)
Q Consensus 393 ~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~~~~~~~~~g~tpl~~A~~~~~~~~~~~ 471 (480)
+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++ ++ ..+..|.||||+|+..|+.+++++
T Consensus 78 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~l~~A~~~~~~~~~~~ 155 (162)
T 1ihb_A 78 ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACDLARLYGRNEVVSL 155 (162)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC--CcCCCCCcHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 47 568999999999999999999999
Q ss_pred HHHcCCC
Q psy875 472 LVSAGAE 478 (480)
Q Consensus 472 Ll~~ga~ 478 (480)
|+++|||
T Consensus 156 Ll~~GAd 162 (162)
T 1ihb_A 156 MQANGAG 162 (162)
T ss_dssp HHHTC--
T ss_pred HHHhCCC
Confidence 9999986
No 13
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.93 E-value=2.3e-25 Score=198.82 Aligned_cols=157 Identities=24% Similarity=0.264 Sum_probs=118.7
Q ss_pred hccCCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875 311 NRKRAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSL 379 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~ 379 (480)
+..|.||||+++..+ +.+++..+..+.+++++|+..|+.+++++|++.|+++... ....
T Consensus 42 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----------~~~~ 111 (236)
T 1ikn_D 42 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH----------SILK 111 (236)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS----------CGGG
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHH----------HHhh
Confidence 334666666665443 3344555556666666666666666666666666654321 1123
Q ss_pred cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHH
Q psy875 380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLH 458 (480)
Q Consensus 380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~ 458 (480)
..+..|.||||+|+..|+.+++++|++.|++++.++. .|+||||+|+..|+.+++++|+++|++++ ..|..|.||||
T Consensus 112 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~ 189 (236)
T 1ikn_D 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ 189 (236)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cccCCCCCHHH
Confidence 3455689999999999999999999999999998887 89999999999999999999999999988 55888999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCC
Q psy875 459 EAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 459 ~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
+|+..|+.+++++|+++|+++
T Consensus 190 ~A~~~~~~~~~~~Ll~~ga~~ 210 (236)
T 1ikn_D 190 LTWGRPSTRIQQQLGQLTLEN 210 (236)
T ss_dssp GCTTSSCHHHHHHHHTTSCGG
T ss_pred HHHccCchHHHHHHHHcchhh
Confidence 999999999999999999864
No 14
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=6e-23 Score=198.15 Aligned_cols=260 Identities=15% Similarity=0.141 Sum_probs=222.5
Q ss_pred hhHHHhhccchhhhhhh-------HHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCch
Q psy875 3 FKIALSRGIGLSDSLDS-------ACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPE 73 (480)
Q Consensus 3 ~~~~~~~g~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~ 73 (480)
+.+++.+|.. +...++ ....+.+.......+..+.++..+|.++...|++++|+.++++++++. .++...
T Consensus 47 ~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 125 (406)
T 3sf4_A 47 SAIYSQLGNA-YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 125 (406)
T ss_dssp HHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc
Confidence 3456666666 333333 222244555555567789999999999999999999999999999996 344455
Q ss_pred HHHHHHHHHHHHHHhhcc--------------------HHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChH
Q psy875 74 AVKTLGEIGDLYELQEKS--------------------FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLD 133 (480)
Q Consensus 74 ~~~~~~~lg~~y~~~~~~--------------------~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~ 133 (480)
.+.++..+|.+|... |+ +++|+.++++++.+....++.+....++.++|.+|..+|+++
T Consensus 126 ~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 204 (406)
T 3sf4_A 126 EARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR 204 (406)
T ss_dssp HHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHH
T ss_pred hHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHH
Confidence 677899999995555 99 999999999999999988888899999999999999999999
Q ss_pred HHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCch
Q psy875 134 SACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPF 207 (480)
Q Consensus 134 ~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 207 (480)
+|+.++++++...+. ...+.++.++|.+|..+|++++|+.++++++++... ++.....++..+|.++...|+ +
T Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~ 283 (406)
T 3sf4_A 205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-Y 283 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc-H
Confidence 999999999876543 334668999999999999999999999999998665 455668899999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875 208 ELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLD 265 (480)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~ 265 (480)
++|+.++++++.+....++......++..+|.+|..+|++++|..+++++.++..++.
T Consensus 284 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 341 (406)
T 3sf4_A 284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 341 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999887764
No 15
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.92 E-value=1e-24 Score=194.01 Aligned_cols=151 Identities=25% Similarity=0.248 Sum_probs=129.4
Q ss_pred ccCCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcccc
Q psy875 312 RKRAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLL 380 (480)
Q Consensus 312 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 380 (480)
..|.||||+++..+ +.+++..+..+.++++.|+..|+.+++++|+++|++++..+
T Consensus 38 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-------------- 103 (231)
T 3aji_A 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN-------------- 103 (231)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC--------------
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCC--------------
Confidence 34777777776554 44567777788899999999999999999999999887643
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460 (480)
Q Consensus 381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A 460 (480)
..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 104 --~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A 179 (231)
T 3aji_A 104 --QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN--IQDTEGNTPLHLA 179 (231)
T ss_dssp --TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHH
T ss_pred --CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--ccCCCCCCHHHHH
Confidence 348899999999999999999999999999999999999999999999999999999999998 5588899999999
Q ss_pred HHcCCHHHHHHHHHcCCCCC
Q psy875 461 ANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 461 ~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+..|+.+++++|+++|++++
T Consensus 180 ~~~~~~~~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 180 CDEERVEEAKFLVTQGASIY 199 (231)
T ss_dssp HHTTCHHHHHHHHHTTCCSC
T ss_pred HHCCCHHHHHHHHHCCCCCC
Confidence 99999999999999999874
No 16
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.92 E-value=1.3e-24 Score=183.19 Aligned_cols=149 Identities=30% Similarity=0.324 Sum_probs=132.2
Q ss_pred hhccCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHH
Q psy875 310 TNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETAL 389 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l 389 (480)
....|+..+...+...+.+++..+..+.++++.|+..|+.+++++|+++|++++..+ ..|.|||
T Consensus 21 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L 84 (169)
T 2y1l_E 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD----------------HAGMTPL 84 (169)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTSCCHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC----------------CCCCCHH
Confidence 344455555444555677788888899999999999999999999999999987653 3499999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q psy875 390 HVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIV 469 (480)
Q Consensus 390 ~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~ 469 (480)
|+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++
T Consensus 85 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~~~~~~ 162 (169)
T 2y1l_E 85 RLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN--AQDKFGKTAFDISIDNGNEDLA 162 (169)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 5699999999999999999999
Q ss_pred HHHHHcC
Q psy875 470 QALVSAG 476 (480)
Q Consensus 470 ~~Ll~~g 476 (480)
++|++.|
T Consensus 163 ~~L~~~G 169 (169)
T 2y1l_E 163 EILQKLN 169 (169)
T ss_dssp HHHHTC-
T ss_pred HHHHHcC
Confidence 9999887
No 17
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=4.6e-23 Score=199.68 Aligned_cols=261 Identities=14% Similarity=0.087 Sum_probs=223.8
Q ss_pred hhHHHhhccchhhhhhhHH-------HHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCch
Q psy875 3 FKIALSRGIGLSDSLDSAC-------TELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPE 73 (480)
Q Consensus 3 ~~~~~~~g~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~ 73 (480)
+.+++.+|.. +...++.. ..+.+.+........+.++..+|.+|...|++++|+.+|++++++. .++.+.
T Consensus 86 ~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 164 (411)
T 4a1s_A 86 SAIYSQLGNA-YFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS 164 (411)
T ss_dssp HHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH
Confidence 3566677776 44444422 2244444445567889999999999999999999999999999996 444566
Q ss_pred HHHHHHHHHHHHHHhhcc-----------------HHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHH
Q psy875 74 AVKTLGEIGDLYELQEKS-----------------FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSAC 136 (480)
Q Consensus 74 ~~~~~~~lg~~y~~~~~~-----------------~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~ 136 (480)
...++..+|.+|... |+ +++|+.++++++.+....++......++.++|.+|...|++++|+
T Consensus 165 ~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 243 (411)
T 4a1s_A 165 EGRALYNLGNVYHAK-GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAI 243 (411)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHc-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 788999999995555 99 999999999999998888888888999999999999999999999
Q ss_pred HHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHH
Q psy875 137 SELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELV 210 (480)
Q Consensus 137 ~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A 210 (480)
.+|++++...+. .....++.++|.+|..+|++++|+.++++++++... +......++..+|.++..+|+ +++|
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A 322 (411)
T 4a1s_A 244 EHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE-FNTA 322 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHH
Confidence 999999876543 233568999999999999999999999999998664 455668899999999999999 9999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875 211 VSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 211 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~ 266 (480)
+.++++++.+....++......++..++.+|..+|++++|..+++++.++.++++.
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999988999999999999999999999999999999999877765
No 18
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=5.2e-25 Score=187.50 Aligned_cols=145 Identities=23% Similarity=0.268 Sum_probs=133.5
Q ss_pred chhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCC
Q psy875 318 SHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGN 397 (480)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~ 397 (480)
+.+++..++.+++..+..+.++++.|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+
T Consensus 21 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN----------------RGDDTPLHLAASHGH 84 (179)
T ss_dssp HHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTCCCHHHHHHHTTC
T ss_pred HHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC----------------CCCCCHHHHHHHcCC
Confidence 3344555577788888999999999999999999999999999998654 349999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy875 398 LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477 (480)
Q Consensus 398 ~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga 477 (480)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.|||++|+..++.+++++|+++|+
T Consensus 85 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~ 162 (179)
T 3f6q_A 85 RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS--ICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162 (179)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS--BCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--hhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999 669999999999999999999999999999
Q ss_pred CCC
Q psy875 478 EVS 480 (480)
Q Consensus 478 ~~~ 480 (480)
+++
T Consensus 163 ~~~ 165 (179)
T 3f6q_A 163 NLN 165 (179)
T ss_dssp CCS
T ss_pred Ccc
Confidence 985
No 19
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=7.6e-23 Score=191.76 Aligned_cols=260 Identities=15% Similarity=0.145 Sum_probs=217.0
Q ss_pred hhHHHhhccchhhhhhh-------HHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCch
Q psy875 3 FKIALSRGIGLSDSLDS-------ACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPE 73 (480)
Q Consensus 3 ~~~~~~~g~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~ 73 (480)
..++..+|.. +...++ ....+.+..........+.++..+|.++...|++++|+.++++++++. .++...
T Consensus 43 ~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 121 (338)
T 3ro2_A 43 SAIYSQLGNA-YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 121 (338)
T ss_dssp HHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH
Confidence 3455566665 333333 222244445555567788999999999999999999999999999986 334455
Q ss_pred HHHHHHHHHHHHHHhhcc--------------------HHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChH
Q psy875 74 AVKTLGEIGDLYELQEKS--------------------FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLD 133 (480)
Q Consensus 74 ~~~~~~~lg~~y~~~~~~--------------------~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~ 133 (480)
.+.++..+|.+|... |+ +++|+.++++++.+.+..++.+....++.++|.+|...|+++
T Consensus 122 ~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (338)
T 3ro2_A 122 EARALYNLGNVYHAK-GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR 200 (338)
T ss_dssp HHHHHHHHHHHHHHH-HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHc-CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 677899999995555 99 999999999999998888888888999999999999999999
Q ss_pred HHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCch
Q psy875 134 SACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPF 207 (480)
Q Consensus 134 ~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 207 (480)
+|+.++++++...+. ...+.++..+|.+|...|++++|+.++++++++... ++.....++..+|.++...|+ +
T Consensus 201 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~ 279 (338)
T 3ro2_A 201 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-Y 279 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC-H
Confidence 999999998866543 334668999999999999999999999999998655 456668899999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875 208 ELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLD 265 (480)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~ 265 (480)
++|..++++++.+.+..++......++..++.+|..+|++++|..+++++.++.++++
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999899999999999999999999999999999998876653
No 20
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=1.4e-24 Score=175.87 Aligned_cols=125 Identities=31% Similarity=0.443 Sum_probs=116.4
Q ss_pred CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875 334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV 413 (480)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~ 413 (480)
..+.++++.|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|++++.
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 75 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKD----------------EYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcC----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence 456688999999999999999999999988653 3499999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy875 414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG 476 (480)
Q Consensus 414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g 476 (480)
+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|
T Consensus 76 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN--AQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999 56999999999999999999999999987
No 21
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=2.1e-24 Score=172.38 Aligned_cols=126 Identities=42% Similarity=0.566 Sum_probs=118.4
Q ss_pred CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875 335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ 414 (480)
Q Consensus 335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~ 414 (480)
++.++++.|+..|+.+++++|+++|++++..+ ..|.||||+|+..++.+++++|++.|++++.+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~ 64 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD----------------KNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC----------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcC----------------CCCCcHHHHHHHcCcHHHHHHHHHcCCCCccc
Confidence 36789999999999999999999999987653 34999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875 415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478 (480)
Q Consensus 415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 478 (480)
|..|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|+|
T Consensus 65 ~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVN--AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred CCCCCcHHHHHHHcChHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999 5699999999999999999999999999996
No 22
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.3e-25 Score=203.68 Aligned_cols=151 Identities=21% Similarity=0.195 Sum_probs=128.2
Q ss_pred hccCCccchhhhccCCC-----------cCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875 311 NRKRAPRSHFLIKRNDK-----------DSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSL 379 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~ 379 (480)
+..|.||||+|+..+.. +++.....+.++++.|+..++.+++++|++.|++++..+
T Consensus 83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d------------- 149 (269)
T 4b93_B 83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD------------- 149 (269)
T ss_dssp CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-------------
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCC-------------
Confidence 34588999998777644 556778889999999999999999999999999998654
Q ss_pred cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875 380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHE 459 (480)
Q Consensus 380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~ 459 (480)
..|.||||+|+..|+.+++++|++.|+++|.++..|+||||+|+..|+.++|++|+++|++++ .+|..|+||||+
T Consensus 150 ---~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~--~~d~~G~TpL~~ 224 (269)
T 4b93_B 150 ---LSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ--VLNKRQRTAVDC 224 (269)
T ss_dssp ---TTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCSGGG
T ss_pred ---CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHH
Confidence 359999999999999999999999999999999999999999999999999999999999999 669999999999
Q ss_pred HHHcCC-HHHHHHHHHcCCCC
Q psy875 460 AANHGH-TDIVQALVSAGAEV 479 (480)
Q Consensus 460 A~~~~~-~~~~~~Ll~~ga~~ 479 (480)
|+.+++ .+++++|...|+.+
T Consensus 225 A~~~~~i~~lL~~l~~~~~~~ 245 (269)
T 4b93_B 225 AEQNSKIMELLQVVPSCVASL 245 (269)
T ss_dssp SCTTCHHHHHTTC--------
T ss_pred HHhCCcHHHHHHHHHHhchhh
Confidence 998876 45666666666543
No 23
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.92 E-value=9.9e-23 Score=195.17 Aligned_cols=241 Identities=14% Similarity=0.102 Sum_probs=202.8
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh--cc-CchHHHHHHHHHHHHHHhhccHHHHH
Q psy875 20 ACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA--RN-FPEAVKTLGEIGDLYELQEKSFEIVQ 96 (480)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~-~~~~~~~~~~lg~~y~~~~~~~~~A~ 96 (480)
....+.+..........+.+++.+|.+|...|++++|+.++++|++++. .+ .+..+.++.++|.+|.. .|++++|+
T Consensus 124 ~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~-~~~~~~A~ 202 (378)
T 3q15_A 124 YREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD-FKHYDKAL 202 (378)
T ss_dssp HHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH-hCCHHHHH
Confidence 3334555555556678899999999999999999999999999999962 22 33568889999999544 49999999
Q ss_pred HHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccc---cccHHHHHHHHHHHHHhhccHHHHHH
Q psy875 97 STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL---CKDLASCYISLAQTYKDNKQYNLAVD 173 (480)
Q Consensus 97 ~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~~~la~~y~~~~~~~~A~~ 173 (480)
.++++|+.+.+..++....+.++.++|.+|..+|++++|+.+|++++.... .+....++.++|.+|..+|++++|+.
T Consensus 203 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 282 (378)
T 3q15_A 203 PHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ 282 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999988888888899999999999999999999999999987332 24457889999999999999999999
Q ss_pred HHHHHHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q psy875 174 YFNKELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQ 252 (480)
Q Consensus 174 ~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 252 (480)
++++++++... ..+.....+..++.++...++ . ..+.+++...++.+..+....++..+|.+|..+|++++|..
T Consensus 283 ~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~-~----~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~ 357 (378)
T 3q15_A 283 FIEEGLDHITARSHKFYKELFLFLQAVYKETVD-E----RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAA 357 (378)
T ss_dssp HHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC-H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc-H----HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999998665 233334456788888887777 4 67888888888888888889999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q psy875 253 IKTELKSLEEKLDL 266 (480)
Q Consensus 253 ~~~~~~~l~~~~~~ 266 (480)
+++++.++.+++..
T Consensus 358 ~~~~al~~~~~~~~ 371 (378)
T 3q15_A 358 FYRKVLKAQEDILK 371 (378)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988865
No 24
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=196.64 Aligned_cols=148 Identities=22% Similarity=0.196 Sum_probs=133.7
Q ss_pred cCCccchhhhcc-----------CCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875 313 KRAPRSHFLIKR-----------NDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE 381 (480)
Q Consensus 313 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (480)
.|.||||+++.. .+.+++..+..+.++++.|+..|+.+++++|+++|++++...
T Consensus 35 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------------- 99 (261)
T 2xai_A 35 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES--------------- 99 (261)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC---------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC---------------
Confidence 467777777554 345677788889999999999999999999999999987532
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~ 461 (480)
+|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++ . +..|.||||+|+
T Consensus 100 --~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~-~~~g~t~Lh~A~ 174 (261)
T 2xai_A 100 --DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--Q-GKGQDSPLHAVA 174 (261)
T ss_dssp --TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT--C-CBTTBCHHHHHH
T ss_pred --CCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--C-CCCCCChHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999 3 788999999999
Q ss_pred HcCCHHHHHHHHHcCCCCC
Q psy875 462 NHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 462 ~~~~~~~~~~Ll~~ga~~~ 480 (480)
..|+.+++++|+++|++++
T Consensus 175 ~~~~~~~v~~Ll~~gad~~ 193 (261)
T 2xai_A 175 RTASEELACLLMDFGADTQ 193 (261)
T ss_dssp HHTCHHHHHHHHHTTCCTT
T ss_pred HcCCHHHHHHHHHcCCCCC
Confidence 9999999999999999985
No 25
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.92 E-value=2.7e-24 Score=191.35 Aligned_cols=153 Identities=25% Similarity=0.224 Sum_probs=134.0
Q ss_pred CCccchhhhcc------------CCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875 314 RAPRSHFLIKR------------NDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE 381 (480)
Q Consensus 314 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (480)
|.||||+|+.. .+.+++..+..+.++++.|+..|+.+++++|++.|+++.... ....
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-----------~~~~ 71 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEP-----------MTSE 71 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCC-----------CCST
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcccc-----------cccc
Confidence 66677766544 366778888899999999999999999999999999874321 1123
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-------------CCChHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDS-------------AGWLPLHEAANHGHTDIVQALVSAGADPNDKV 448 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~-------------~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~ 448 (480)
+..|.||||+|+..|+.+++++|++.|++++.++. .|+||||+|+..|+.+++++|+++|++++ .
T Consensus 72 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~ 149 (232)
T 2rfa_A 72 LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR--A 149 (232)
T ss_dssp TTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT--C
T ss_pred CCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--C
Confidence 45699999999999999999999999999998865 79999999999999999999999999999 6
Q ss_pred CCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCC
Q psy875 449 QDSAGWLPLHEAANHGHTDIV----QALVSAGAEV 479 (480)
Q Consensus 449 ~~~~g~tpl~~A~~~~~~~~~----~~Ll~~ga~~ 479 (480)
+|..|.||||+|+..|+.+++ ++|+++|+++
T Consensus 150 ~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 150 QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp CCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 699999999999999999988 9999999975
No 26
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.92 E-value=3e-24 Score=191.68 Aligned_cols=151 Identities=23% Similarity=0.191 Sum_probs=118.6
Q ss_pred cCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc-----------------c-CCCccccCCCCCchHH
Q psy875 328 DSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL-----------------E-TPTTSLLEKPRGETAL 389 (480)
Q Consensus 328 ~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~-----------------~-~~~~~~~~~~~g~~~l 389 (480)
+++..+..+.++++.|+..|+.+++++|+++|++++..+....+. . .+......+..|.|||
T Consensus 36 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L 115 (237)
T 3b7b_A 36 NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115 (237)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHH
T ss_pred CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHH
Confidence 444455556666666666666666666666666655432211110 1 1133344456699999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q psy875 390 HVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIV 469 (480)
Q Consensus 390 ~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~ 469 (480)
|+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++
T Consensus 116 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v 193 (237)
T 3b7b_A 116 IWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH--AVNIHGDSPLHIAARENRYDCV 193 (237)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT--CCCTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHhCCHhHH
Confidence 99999999999999999999999999999999999999999999999999999999 5689999999999999999999
Q ss_pred HHHHHcCCCCC
Q psy875 470 QALVSAGAEVS 480 (480)
Q Consensus 470 ~~Ll~~ga~~~ 480 (480)
++|+++|++++
T Consensus 194 ~~Ll~~gad~~ 204 (237)
T 3b7b_A 194 VLFLSRDSDVT 204 (237)
T ss_dssp HHHHTTTCCTT
T ss_pred HHHHHcCCCCC
Confidence 99999999875
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.92 E-value=2.5e-24 Score=191.04 Aligned_cols=151 Identities=28% Similarity=0.337 Sum_probs=133.7
Q ss_pred ccCCccchhhhccCCC-------------cCCC-CcCCCchHHHHHHhhCcHHHHHHHHhcC--CchhhhhhhhccccCC
Q psy875 312 RKRAPRSHFLIKRNDK-------------DSNL-NLYNIESITISRNRLGAQEVRKLLSLLN--ADLLVHLNLSATLETP 375 (480)
Q Consensus 312 ~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~~~~a~~~~~~~~v~~L~~~g--~~~~~~~~~~~~~~~~ 375 (480)
..|.||||+++..+.. +++. .+..+.++++.|+..|+.+++++|+++| ++++..
T Consensus 34 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~---------- 103 (228)
T 2dzn_A 34 QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI---------- 103 (228)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCC----------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccC----------
Confidence 3578888888765543 3333 5678889999999999999999999999 666543
Q ss_pred CccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCC
Q psy875 376 TTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG-ADPNDKVQDSAGW 454 (480)
Q Consensus 376 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~g~ 454 (480)
+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++| ++++ ..|..|+
T Consensus 104 ------~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~ 175 (228)
T 2dzn_A 104 ------TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGW 175 (228)
T ss_dssp ------CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC--CCCTTSC
T ss_pred ------CcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc--CcCCCCC
Confidence 345999999999999999999999999999999999999999999999999999999999 9999 5699999
Q ss_pred cHHHHHHHcCCHHHHHHHH-HcCCCCC
Q psy875 455 LPLHEAANHGHTDIVQALV-SAGAEVS 480 (480)
Q Consensus 455 tpl~~A~~~~~~~~~~~Ll-~~ga~~~ 480 (480)
||||+|+..|+.+++++|+ ++|++++
T Consensus 176 t~L~~A~~~~~~~~v~~Ll~~~ga~~~ 202 (228)
T 2dzn_A 176 TPLFHALAEGHGDAAVLLVEKYGAEYD 202 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHCCCSC
T ss_pred CHHHHHHHcCCHHHHHHHHHhcCCCCC
Confidence 9999999999999999999 8999975
No 28
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.92 E-value=3.2e-24 Score=189.59 Aligned_cols=150 Identities=25% Similarity=0.236 Sum_probs=110.8
Q ss_pred ccCCccchhhhccCC------------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875 312 RKRAPRSHFLIKRND------------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSL 379 (480)
Q Consensus 312 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~ 379 (480)
..|.||+|+++..+. .+++..+..+.++++.|+..|+.+++++|+++|++++..
T Consensus 56 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-------------- 121 (223)
T 2f8y_A 56 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-------------- 121 (223)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB--------------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCc--------------
Confidence 345566666554432 233444555566666666666666666666666665543
Q ss_pred cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875 380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHE 459 (480)
Q Consensus 380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~ 459 (480)
+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ ..|..|.||+|+
T Consensus 122 --~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~ 197 (223)
T 2f8y_A 122 --DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPRDI 197 (223)
T ss_dssp --CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHH
T ss_pred --CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc--cccccCCCHHHH
Confidence 3448888888888888888888888888888888888888888888888888888888888888 558888888888
Q ss_pred HHHcCCHHHHHHHHHcCCCC
Q psy875 460 AANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 460 A~~~~~~~~~~~Ll~~ga~~ 479 (480)
|+..++.+++++|+++|+..
T Consensus 198 A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 198 AQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp HHHTTCHHHHHHHHHTTCSS
T ss_pred HHHhcchHHHHHHHHcCCCc
Confidence 88888888888888888764
No 29
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=3.5e-25 Score=183.98 Aligned_cols=130 Identities=25% Similarity=0.312 Sum_probs=116.3
Q ss_pred CcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC
Q psy875 332 NLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPV 411 (480)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~ 411 (480)
....+.++++.|+..|+.++|++|+++|++++..+ ..|.||||+|+ .|+.+++++|+++|+++
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~ 70 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPN----------------SYGRRPIQVMM-MGSARVAELLLLHGAEP 70 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCC----------------SSSCCTTTSSC-TTCHHHHHHHHTTTCCC
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------------CCCCCHHHHHH-cCCHHHHHHHHHcCCCC
Confidence 34566789999999999999999999999988753 34999999986 89999999999999999
Q ss_pred CCCCCCCCh-HHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 412 KVQDSAGWL-PLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 412 ~~~~~~g~t-~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+.+|..|+| |||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 71 ~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~ 138 (156)
T 1bi7_B 71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR 138 (156)
T ss_dssp CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTCCCHHHHHHHHTCHHHHHHHSSCC----
T ss_pred CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC
Confidence 999999999 9999999999999999999999999 569999999999999999999999999999874
No 30
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.92 E-value=1.7e-24 Score=179.95 Aligned_cols=135 Identities=27% Similarity=0.339 Sum_probs=123.0
Q ss_pred hhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHH
Q psy875 321 LIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTL 400 (480)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~ 400 (480)
++...+.+++..+..+.++++. +..|+.+++++|+++|++++..+ ..|.||||+|+..|+.++
T Consensus 21 ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~ 83 (156)
T 1bd8_A 21 LLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQD----------------TSGTSPVHDAARTGFLDT 83 (156)
T ss_dssp HHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHHHHTTCHHH
T ss_pred HHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcC----------------CCCCCHHHHHHHcCcHHH
Confidence 3444345777888889999999 99999999999999999988654 349999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy875 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475 (480)
Q Consensus 401 ~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 475 (480)
+++|++.|++++.+|..|+||||+|+..|+.+++++|+++ ++++ ..|..|.||||+|+..|+.+++++|+++
T Consensus 84 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~--~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 84 LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH--RRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT--CCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC--CcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999 8898 6699999999999999999999999874
No 31
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=1.6e-24 Score=181.83 Aligned_cols=136 Identities=27% Similarity=0.306 Sum_probs=122.2
Q ss_pred ccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHH
Q psy875 323 KRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQ 402 (480)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~ 402 (480)
..++.+++..+..+.++++.|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.++++
T Consensus 29 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~ 92 (165)
T 3twr_A 29 TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD----------------KGGLVPLHNACSYGHYEVAE 92 (165)
T ss_dssp CTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHHHHTTCHHHHH
T ss_pred HcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccC----------------CCCCCHHHHHHHcCcHHHHH
Confidence 33455556666777899999999999999999999999988654 35999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy875 403 SLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477 (480)
Q Consensus 403 ~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga 477 (480)
+|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+. ++.+++++|+++|+
T Consensus 93 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 93 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT--KKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred HHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999 569999999999877 89999999999987
No 32
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.92 E-value=5.9e-24 Score=187.89 Aligned_cols=151 Identities=24% Similarity=0.229 Sum_probs=136.8
Q ss_pred ccCCccchhh-----------hccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCC-chhhhhhhhccccCCCccc
Q psy875 312 RKRAPRSHFL-----------IKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNA-DLLVHLNLSATLETPTTSL 379 (480)
Q Consensus 312 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~-~~~~~~~~~~~~~~~~~~~ 379 (480)
..|.||||+| +...+.+++..+..+.++++.|+..|+.+++++|++.|+ +++..+
T Consensus 23 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~------------- 89 (223)
T 2f8y_A 23 RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM------------- 89 (223)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCC-------------
T ss_pred CCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-------------
Confidence 3466666665 345778889888999999999999999999999999997 666543
Q ss_pred cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875 380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHE 459 (480)
Q Consensus 380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~ 459 (480)
..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+
T Consensus 90 ---~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~ 164 (223)
T 2f8y_A 90 ---HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLFL 164 (223)
T ss_dssp ---TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHH
T ss_pred ---CCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCcCHHHH
Confidence 349999999999999999999999999999999999999999999999999999999999999 569999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCC
Q psy875 460 AANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 460 A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
|+..|+.+++++|+++|++++
T Consensus 165 A~~~~~~~~v~~Ll~~ga~~~ 185 (223)
T 2f8y_A 165 AAREGSYETAKVLLDHFANRD 185 (223)
T ss_dssp HHHHTCHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHcCCCCc
Confidence 999999999999999999875
No 33
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.91 E-value=4.4e-24 Score=193.45 Aligned_cols=149 Identities=24% Similarity=0.195 Sum_probs=133.3
Q ss_pred cCCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875 313 KRAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE 381 (480)
Q Consensus 313 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (480)
.|.||||+|+..+ +.+++..+..+.++++.|+..|+.++|++|+++|++++..+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------- 66 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT--------------- 66 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC---------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC---------------
Confidence 3677777776554 45778888899999999999999999999999999988654
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~ 461 (480)
..|.||||+|+..|+.+++++|++.|++++.. ..|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+
T Consensus 67 -~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~ 142 (261)
T 2xai_A 67 -ADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLYLAC 142 (261)
T ss_dssp -TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTTBCHHHHHH
T ss_pred -CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCC--cCCCCCCCHHHHHH
Confidence 34999999999999999999999999999864 569999999999999999999999999999 56999999999999
Q ss_pred HcCCHHHHHHHHHcCCCCC
Q psy875 462 NHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 462 ~~~~~~~~~~Ll~~ga~~~ 480 (480)
..|+.+++++|+++|++++
T Consensus 143 ~~~~~~~v~~Ll~~g~~~~ 161 (261)
T 2xai_A 143 ENQQRACVKKLLESGADVN 161 (261)
T ss_dssp HTTCHHHHHHHHHHTCCTT
T ss_pred HhCCHHHHHHHHHcCCCCC
Confidence 9999999999999999985
No 34
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.91 E-value=3.7e-24 Score=177.16 Aligned_cols=141 Identities=22% Similarity=0.252 Sum_probs=116.8
Q ss_pred cCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHH
Q psy875 313 KRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVA 392 (480)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a 392 (480)
.|+......+...+.+++ .+..+.++++.|+..|+.+++++|++.|++++..+ ..|.||||+|
T Consensus 12 ~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A 74 (153)
T 1awc_B 12 AGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART----------------KVDRTPLHMA 74 (153)
T ss_dssp HTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC----------------TTCCCHHHHH
T ss_pred cCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------------CCCCCHHHHH
Confidence 344333333333444554 35678899999999999999999999998887653 3489999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy875 393 AARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQAL 472 (480)
Q Consensus 393 ~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~L 472 (480)
+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|
T Consensus 75 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 75 ASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998 5588999999999999999999886
No 35
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.91 E-value=2.3e-24 Score=185.72 Aligned_cols=134 Identities=26% Similarity=0.278 Sum_probs=125.4
Q ss_pred CCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcC
Q psy875 329 SNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQG 408 (480)
Q Consensus 329 ~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g 408 (480)
+|..+..+.++++.|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g 91 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD----------------IEGSTALIWAVKNNRLGIAEKLLSKG 91 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccc----------------ccCccHHHHHHHcCCHHHHHHHHHCC
Confidence 45667788999999999999999999999999987653 34999999999999999999999999
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 409 HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 409 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 92 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 161 (192)
T 2rfm_A 92 SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPLIVASKYGRSEIVKKLLELGADIS 161 (192)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS--CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 9999999999999999999999999999999999999 569999999999999999999999999999875
No 36
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.91 E-value=1.1e-24 Score=198.93 Aligned_cols=167 Identities=20% Similarity=0.189 Sum_probs=136.6
Q ss_pred hccCCccchhhhcc---CCCcC------------------CC----CcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhh
Q psy875 311 NRKRAPRSHFLIKR---NDKDS------------------NL----NLYNIESITISRNRLGAQEVRKLLSLLNADLLVH 365 (480)
Q Consensus 311 ~~~~~~~~~~~~~~---~~~~~------------------~~----~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~ 365 (480)
+..|.||||+++.. +..++ +. .+..+.++|++|+..|+.++|++|+++|++++..
T Consensus 51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~ 130 (273)
T 2pnn_A 51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA 130 (273)
T ss_dssp TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc
Confidence 44689999999864 44322 11 3457889999999999999999999999999876
Q ss_pred hhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHh---cCCCCCCCCCCCChHHHHHHHcCC---------HHH
Q psy875 366 LNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLK---QGHPVKVQDSAGWLPLHEAANHGH---------TDI 433 (480)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~---~g~~~~~~~~~g~t~l~~a~~~~~---------~~~ 433 (480)
..... .........+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+ .++
T Consensus 131 ~~~~~--~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~ 208 (273)
T 2pnn_A 131 ANGDF--FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208 (273)
T ss_dssp BCSGG--GSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred ccccc--cccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHH
Confidence 53110 0011112223459999999999999999999999 999999999999999999999998 899
Q ss_pred HHHHHHcCCCCCC-----ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CC
Q psy875 434 VQALVSAGADPND-----KVQDSAGWLPLHEAANHGHTDIVQALVSAGA-EV 479 (480)
Q Consensus 434 ~~~Ll~~g~~~~~-----~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga-~~ 479 (480)
+++|+++|++++. .++|..|.||||+|+..|+.+++++|+++|+ |+
T Consensus 209 v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp 260 (273)
T 2pnn_A 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260 (273)
T ss_dssp HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--
T ss_pred HHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCc
Confidence 9999999999973 2368999999999999999999999999999 54
No 37
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.91 E-value=5.8e-24 Score=179.14 Aligned_cols=129 Identities=39% Similarity=0.550 Sum_probs=120.3
Q ss_pred CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875 334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV 413 (480)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~ 413 (480)
....++++.|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++.
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 75 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAED----------------ASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCC----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence 445688999999999999999999999988653 3499999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|++++
T Consensus 76 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 140 (169)
T 2y1l_E 76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADVN--ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140 (169)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999 569999999999999999999999999999874
No 38
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.91 E-value=6e-24 Score=178.76 Aligned_cols=128 Identities=26% Similarity=0.226 Sum_probs=120.6
Q ss_pred CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875 335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ 414 (480)
Q Consensus 335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~ 414 (480)
.+.++++.|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 65 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTD----------------EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCC----------------CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc
Confidence 46789999999999999999999999887653 35999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 66 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 129 (167)
T 3v31_A 66 GKGRESALSLACSKGYTDIVKMLLDCGVDVN--EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129 (167)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC--cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999 569999999999999999999999999999874
No 39
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.91 E-value=1.8e-24 Score=193.01 Aligned_cols=153 Identities=27% Similarity=0.263 Sum_probs=136.1
Q ss_pred hhccCCccchhhhccC---------------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccC
Q psy875 310 TNRKRAPRSHFLIKRN---------------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLET 374 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~ 374 (480)
.+..|.||||+|+..+ +.+++..+..+.++++.|+..|+.++|++|+++|++++..+..
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~------ 77 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR------ 77 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTT------
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC------
Confidence 4557888888886432 2368888889999999999999999999999999999987663
Q ss_pred CCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Q psy875 375 PTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP------VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKV 448 (480)
Q Consensus 375 ~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~ 448 (480)
|.||||+|+..|+.+++++|++.|++ ++..+..|+||||+|+..|+.+++++|+++|++++ .
T Consensus 78 ----------g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~ 145 (236)
T 1ikn_D 78 ----------GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN--A 145 (236)
T ss_dssp ----------CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT--C
T ss_pred ----------CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--C
Confidence 99999999999999999999999976 46778899999999999999999999999999999 5
Q ss_pred CCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 449 QDS-AGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 449 ~~~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
++. .|.||||+|+..|+.+++++|+++|++++
T Consensus 146 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 178 (236)
T 1ikn_D 146 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178 (236)
T ss_dssp CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 576 89999999999999999999999999975
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.91 E-value=2.8e-24 Score=191.27 Aligned_cols=165 Identities=18% Similarity=0.150 Sum_probs=137.5
Q ss_pred ccCCccchhhhccCCCcC----------------CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCC
Q psy875 312 RKRAPRSHFLIKRNDKDS----------------NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETP 375 (480)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~ 375 (480)
..|.||||+++..+..++ +..+..+.++++.|+..|+.+++++|+++|++++........ .
T Consensus 35 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~---~ 111 (232)
T 2rfa_A 35 AMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVF---H 111 (232)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG---S
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcce---e
Confidence 358889998887765432 334557889999999999999999999999999876432111 1
Q ss_pred CccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHH----HHHHHcCCCCCC----c
Q psy875 376 TTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIV----QALVSAGADPND----K 447 (480)
Q Consensus 376 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~----~~Ll~~g~~~~~----~ 447 (480)
......+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++ ++|+++|++++. .
T Consensus 112 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~ 191 (232)
T 2rfa_A 112 YRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLEL 191 (232)
T ss_dssp CCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGG
T ss_pred ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhc
Confidence 11222345699999999999999999999999999999999999999999999999988 999999998831 1
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 448 VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 448 ~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
..|..|.||||+|+..|+.+++++|+++|+.+
T Consensus 192 ~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 192 VPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 45889999999999999999999999998754
No 41
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.91 E-value=8.8e-24 Score=174.91 Aligned_cols=126 Identities=30% Similarity=0.467 Sum_probs=117.9
Q ss_pred CchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q psy875 336 IESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD 415 (480)
Q Consensus 336 ~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~ 415 (480)
..++++.|+..|+.++|++|++.|++++. +..|.||||+|+..|+.+++++|++.|++++.++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-----------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 64 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFTT-----------------DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCCC-----------------CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCCc-----------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 35789999999999999999999998753 2349999999999999999999999999999999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 416 SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 416 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 65 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 127 (153)
T 1awc_B 65 KVDRTPLHMAASEGHANIVEVLLKHGADVN--AKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127 (153)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CCCCCHHHHHHHcChHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence 999999999999999999999999999999 569999999999999999999999999999875
No 42
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.91 E-value=1e-23 Score=193.40 Aligned_cols=148 Identities=21% Similarity=0.195 Sum_probs=120.8
Q ss_pred cCCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875 313 KRAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE 381 (480)
Q Consensus 313 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (480)
.|.||||+++..+ +.+++..+..+.++++.|+..|+.+++++|++.|++++..
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~---------------- 154 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE---------------- 154 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCS----------------
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCC----------------
Confidence 4566666665443 3344555666667777777777777777777777666532
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~ 461 (480)
..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++ . +..|.||||+|+
T Consensus 155 -~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~-~~~g~t~L~~A~ 230 (285)
T 3d9h_A 155 -SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--Q-GKGQDSPLHAVV 230 (285)
T ss_dssp -CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--C-CBTTBCHHHHHH
T ss_pred -CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--C-CCCCCCHHHHHH
Confidence 238999999999999999999999999999999999999999999999999999999999998 2 778999999999
Q ss_pred HcCCHHHHHHHHHcCCCCC
Q psy875 462 NHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 462 ~~~~~~~~~~Ll~~ga~~~ 480 (480)
..|+.+++++|+++|++++
T Consensus 231 ~~~~~~~v~~Ll~~gad~~ 249 (285)
T 3d9h_A 231 RTASEELACLLMDFGADTQ 249 (285)
T ss_dssp HTTCHHHHHHHHHTTCCTT
T ss_pred HcCCHHHHHHHHHCCCCCC
Confidence 9999999999999999875
No 43
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.91 E-value=1.6e-24 Score=196.32 Aligned_cols=165 Identities=19% Similarity=0.127 Sum_probs=134.4
Q ss_pred ccCCccchhhh---ccCCCcC----------------------CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhh
Q psy875 312 RKRAPRSHFLI---KRNDKDS----------------------NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHL 366 (480)
Q Consensus 312 ~~~~~~~~~~~---~~~~~~~----------------------~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~ 366 (480)
..|.||||+|+ ..+..++ +..+..+.++|++|+..|+.++|++|+++|++++..+
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~ 123 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccc
Confidence 35888999887 3344332 2223378899999999999999999999999998765
Q ss_pred hhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHh---cCCCCCCCCCCCChHHHHHHHcCC---------HHHH
Q psy875 367 NLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLK---QGHPVKVQDSAGWLPLHEAANHGH---------TDIV 434 (480)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~---~g~~~~~~~~~g~t~l~~a~~~~~---------~~~~ 434 (480)
.-. ...+......+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++ .+++
T Consensus 124 ~~~--~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v 201 (260)
T 3jxi_A 124 RGR--FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY 201 (260)
T ss_dssp EEC--CCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred ccc--ccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHH
Confidence 310 01111111222459999999999999999999999 999999999999999999999888 7999
Q ss_pred HHHHHcCCCCCC-----ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875 435 QALVSAGADPND-----KVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478 (480)
Q Consensus 435 ~~Ll~~g~~~~~-----~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 478 (480)
++|+++|++++. ...|..|.||||+|+..|+.+++++|+++|++
T Consensus 202 ~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 202 DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 999999999942 25699999999999999999999999999874
No 44
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.91 E-value=6.4e-22 Score=190.94 Aligned_cols=232 Identities=19% Similarity=0.239 Sum_probs=207.6
Q ss_pred hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ 108 (480)
Q Consensus 31 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~ 108 (480)
......+.++..+|.++...|++++|+.++++++.+. .++.+..+.++..+|.+|... |++++|+.++++++.+.+.
T Consensus 41 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~ 119 (406)
T 3sf4_A 41 EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRE 119 (406)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh
Confidence 3455668899999999999999999999999999986 445566788999999995555 9999999999999999998
Q ss_pred CCCchHHHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHh
Q psy875 109 NKDDKLIRTVMRSIKKLYKKHDN--------------------LDSACSELHTVLSSDLC----KDLASCYISLAQTYKD 164 (480)
Q Consensus 109 ~~~~~~~~~~~~~l~~~y~~~~~--------------------~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~ 164 (480)
.++......++.++|.+|...|+ +++|+.++++++..... +..+.++.++|.+|..
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 199 (406)
T 3sf4_A 120 LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL 199 (406)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999 99999999988765332 4457789999999999
Q ss_pred hccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy875 165 NKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYK 242 (480)
Q Consensus 165 ~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 242 (480)
+|++++|+.++++++++... ++...+.++.++|.++...|+ +++|+.++++++.+....++......++..+|.+|.
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 278 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 278 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH
Confidence 99999999999999998665 456677899999999999999 999999999999999999988888999999999999
Q ss_pred HcCChHHHHHHHHHHHHHHHhh
Q psy875 243 KHDKFTELEQIKTELKSLEEKL 264 (480)
Q Consensus 243 ~~g~~~~A~~~~~~~~~l~~~~ 264 (480)
.+|++++|..+++++.++..+.
T Consensus 279 ~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 279 LLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999887764
No 45
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.91 E-value=3.2e-24 Score=193.85 Aligned_cols=163 Identities=19% Similarity=0.150 Sum_probs=135.9
Q ss_pred hccCCccchhhhcc---CCCcC-----------CC-----------CcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhh
Q psy875 311 NRKRAPRSHFLIKR---NDKDS-----------NL-----------NLYNIESITISRNRLGAQEVRKLLSLLNADLLVH 365 (480)
Q Consensus 311 ~~~~~~~~~~~~~~---~~~~~-----------~~-----------~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~ 365 (480)
+..|.||||+|+.. +..++ +. .+..+.++++.|+..|+.++|++|+++|++++..
T Consensus 40 d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~ 119 (256)
T 2etb_A 40 GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR 119 (256)
T ss_dssp TTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Confidence 34688999999887 65543 11 1256889999999999999999999999999876
Q ss_pred hhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHh---cCCCCCCCCCCCChHHHHHHH--cCCHH-------H
Q psy875 366 LNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLK---QGHPVKVQDSAGWLPLHEAAN--HGHTD-------I 433 (480)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~---~g~~~~~~~~~g~t~l~~a~~--~~~~~-------~ 433 (480)
+..... +......+..|.||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+. .++.+ +
T Consensus 120 ~~~~~~---~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~i 196 (256)
T 2etb_A 120 ACGRFF---QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM 196 (256)
T ss_dssp CCSGGG---SCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred cccccc---cccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHH
Confidence 432110 11111222339999999999999999999999 999999999999999999999 78888 9
Q ss_pred HHHHHHcCCCC-------CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875 434 VQALVSAGADP-------NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478 (480)
Q Consensus 434 ~~~Ll~~g~~~-------~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 478 (480)
+++|+++|+++ + .+|..|.||||+|+..|+.+++++|+++|++
T Consensus 197 v~~Ll~~ga~~~~~~~~~~--~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 197 YDGLLQMGARLCPTVQLEE--ISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246 (256)
T ss_dssp HHHHHHHHHHHSTTCCGGG--CCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccccccccc--ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence 99999999999 6 5699999999999999999999999999864
No 46
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=192.60 Aligned_cols=152 Identities=23% Similarity=0.183 Sum_probs=136.7
Q ss_pred hhccCCccchhhhccCC-----------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcc
Q psy875 310 TNRKRAPRSHFLIKRND-----------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTS 378 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~ 378 (480)
.+..|.||||+++..+. .+++..+..+.++|+.|+..|+.++|++|+++|++++..+
T Consensus 55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~------------ 122 (285)
T 3d9h_A 55 DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT------------ 122 (285)
T ss_dssp SSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCC------------
T ss_pred CCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC------------
Confidence 34568888888876654 5667778889999999999999999999999999988653
Q ss_pred ccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHH
Q psy875 379 LLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLH 458 (480)
Q Consensus 379 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~ 458 (480)
..|.||||+|+..|+.+++++|++.|++++..+ .|.||||+|+..|+.+++++|+++|++++ ..|..|.||||
T Consensus 123 ----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~ 195 (285)
T 3d9h_A 123 ----ADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLY 195 (285)
T ss_dssp ----TTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTT--CCBTTTBCHHH
T ss_pred ----CCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH
Confidence 349999999999999999999999999998654 59999999999999999999999999999 56999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCC
Q psy875 459 EAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 459 ~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+|+..|+.+++++|+++|++++
T Consensus 196 ~A~~~~~~~~v~~Ll~~ga~~~ 217 (285)
T 3d9h_A 196 LACENQQRACVKKLLESGADVN 217 (285)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHcCcHHHHHHHHHCCCCCC
Confidence 9999999999999999999975
No 47
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.91 E-value=1.7e-23 Score=185.99 Aligned_cols=149 Identities=23% Similarity=0.271 Sum_probs=133.8
Q ss_pred CCccchhhhccCC------------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875 314 RAPRSHFLIKRND------------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE 381 (480)
Q Consensus 314 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (480)
+++|+|.++..+. ..++..+..+.++++.|+..|+.++|++|+++|++++..+
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------- 70 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD--------------- 70 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC---------------
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcC---------------
Confidence 4556666655543 3456667889999999999999999999999999987653
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~ 461 (480)
..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+
T Consensus 71 -~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~ 147 (231)
T 3aji_A 71 -DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMHRAA 147 (231)
T ss_dssp -TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHH
T ss_pred -CCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCcHHHHHH
Confidence 349999999999999999999999999999999999999999999999999999999999999 56899999999999
Q ss_pred HcCCHHHHHHHHHcCCCCC
Q psy875 462 NHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 462 ~~~~~~~~~~Ll~~ga~~~ 480 (480)
..|+.+++++|+++|++++
T Consensus 148 ~~~~~~~v~~Ll~~g~~~~ 166 (231)
T 3aji_A 148 AKGNLKMVHILLFYKASTN 166 (231)
T ss_dssp HHTCHHHHHHHHHTTCCSC
T ss_pred HcCCHHHHHHHHhcCCCcc
Confidence 9999999999999999875
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=7e-22 Score=191.33 Aligned_cols=231 Identities=18% Similarity=0.225 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN 109 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~ 109 (480)
.....+.+++.+|.+|...|++++|+.++++++++. .++.+....++..+|.+|... |++++|+.++++++.+....
T Consensus 81 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~ 159 (411)
T 4a1s_A 81 DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM-GRFDEAAICCERHLTLARQL 159 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHh
Confidence 445567899999999999999999999999999986 444567788999999995555 99999999999999999888
Q ss_pred CCchHHHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccH
Q psy875 110 KDDKLIRTVMRSIKKLYKKHDN-----------------LDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQY 168 (480)
Q Consensus 110 ~~~~~~~~~~~~l~~~y~~~~~-----------------~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~ 168 (480)
++.+....++.++|.+|...|+ +++|+.++++++..... +..+.++.++|.+|..+|++
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 239 (411)
T 4a1s_A 160 GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF 239 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 8888889999999999999999 99999999988765432 44577899999999999999
Q ss_pred HHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Q psy875 169 NLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK 246 (480)
Q Consensus 169 ~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (480)
++|+.++++++++... +......++.++|.++..+|+ +++|+.++++++.+....++......++..++.+|..+|+
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (411)
T 4a1s_A 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ-FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE 318 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999998665 556667799999999999999 9999999999999999988888889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhh
Q psy875 247 FTELEQIKTELKSLEEKL 264 (480)
Q Consensus 247 ~~~A~~~~~~~~~l~~~~ 264 (480)
+++|..+++++..+....
T Consensus 319 ~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 319 FNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 999999999999987765
No 49
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.91 E-value=1.7e-23 Score=185.62 Aligned_cols=152 Identities=22% Similarity=0.218 Sum_probs=131.7
Q ss_pred CCccchhhhccCCCc------------CCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875 314 RAPRSHFLIKRNDKD------------SNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE 381 (480)
Q Consensus 314 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (480)
|+||||+++..+..+ ++..+..+.+++++|+..|+.+++++|++.|++++... ..
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-------------~~ 68 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD-------------YP 68 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG-------------CC
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc-------------cC
Confidence 567777776665442 34467888999999999999999999999995554332 02
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQG--HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHE 459 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~ 459 (480)
+..|.||||+|+..|+.+++++|++.| ++++.++..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+
T Consensus 69 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~ 146 (228)
T 2dzn_A 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLHR 146 (228)
T ss_dssp CTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc--ccCCCCCCHHHH
Confidence 345999999999999999999999998 8899999999999999999999999999999999999 569999999999
Q ss_pred HHHcCCHHHHHHHHHcC-CCCC
Q psy875 460 AANHGHTDIVQALVSAG-AEVS 480 (480)
Q Consensus 460 A~~~~~~~~~~~Ll~~g-a~~~ 480 (480)
|+..|+.+++++|+++| ++++
T Consensus 147 A~~~~~~~~v~~Ll~~g~~~~~ 168 (228)
T 2dzn_A 147 AASVGSLKLIELLCGLGKSAVN 168 (228)
T ss_dssp HHHTTCHHHHHHHHTTTCCCSC
T ss_pred HHHcCCHHHHHHHHhcCccccc
Confidence 99999999999999999 7764
No 50
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.91 E-value=2.6e-23 Score=180.57 Aligned_cols=93 Identities=31% Similarity=0.469 Sum_probs=67.6
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCChHHHHHHHcCC-----HHHHHHHHHcCCCCCCccCCCCCCc
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGH-----TDIVQALVSAGADPNDKVQDSAGWL 455 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g-~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~Ll~~g~~~~~~~~~~~g~t 455 (480)
+..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..+. .+++++|+++|++++ .+|..|.|
T Consensus 103 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t 180 (201)
T 3hra_A 103 NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS--IKDNSGRT 180 (201)
T ss_dssp CTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT--CCCTTSCC
T ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC--ccCCCCCC
Confidence 334777777777777777777777776 6777777777777777777766 777777777777777 44777777
Q ss_pred HHHHHHHcCCHHHHHHHHHcC
Q psy875 456 PLHEAANHGHTDIVQALVSAG 476 (480)
Q Consensus 456 pl~~A~~~~~~~~~~~Ll~~g 476 (480)
|||+|+..|+.+++++|+++|
T Consensus 181 ~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 181 AMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHHcCCHhHHHHHHhcC
Confidence 777777777777777777765
No 51
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.91 E-value=3e-23 Score=192.05 Aligned_cols=151 Identities=26% Similarity=0.317 Sum_probs=130.1
Q ss_pred ccCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHH
Q psy875 312 RKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHV 391 (480)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 391 (480)
..|+......+...+.+++..+..+.++++.|+..|+.++|++|+++|++++..+ ..|.||||+
T Consensus 49 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~----------------~~g~tpL~~ 112 (299)
T 1s70_B 49 SSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD----------------NEGWIPLHA 112 (299)
T ss_dssp HHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHH
T ss_pred HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC----------------CCCCcHHHH
Confidence 3444444444445567788888889999999999999999999999999987653 349999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCCCCC-------------------------------------------------------
Q psy875 392 AAARGNLTLVQSLLKQGHPVKVQDS------------------------------------------------------- 416 (480)
Q Consensus 392 a~~~~~~~~~~~ll~~g~~~~~~~~------------------------------------------------------- 416 (480)
|+..|+.+++++|+++|++++.++.
T Consensus 113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (299)
T 1s70_B 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192 (299)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence 9999999999999999998876653
Q ss_pred -----CCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 417 -----AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 417 -----~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
.|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~--~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~ 259 (299)
T 1s70_B 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN--IKDYDGWTPLHAAAHWGKEEACRILVENLCDME 259 (299)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC--CcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence 46788999999999999999999999999 569999999999999999999999999999975
No 52
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.90 E-value=1.6e-21 Score=182.76 Aligned_cols=257 Identities=17% Similarity=0.202 Sum_probs=216.2
Q ss_pred hhHHHhhccchhhhhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHH
Q psy875 3 FKIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGE 80 (480)
Q Consensus 3 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~ 80 (480)
+..++..|.. .+++......+.+ ........+.++..+|.++...|++++|++++++++++. .++.+....++..
T Consensus 12 g~~~~~~g~~-~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 12 GERLCKSGDC-RAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhccH-HHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3444444444 3333333222332 233445567899999999999999999999999999986 4455667888999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCC--------------------hHHHHHHHH
Q psy875 81 IGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDN--------------------LDSACSELH 140 (480)
Q Consensus 81 lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~--------------------~~~A~~~~~ 140 (480)
+|.+|... |++++|+.++++++.+.+..++......++..+|.+|...|+ +++|+.+++
T Consensus 89 l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 89 LGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99995555 999999999999999999888888889999999999999999 999999999
Q ss_pred HHhcccc----cccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHH
Q psy875 141 TVLSSDL----CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTH 214 (480)
Q Consensus 141 ~~l~~~~----~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 214 (480)
+++.... .+....++.++|.+|...|++++|+.++++++++... ++.....++..+|.++...|+ +++|+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~ 246 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FETASEYY 246 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 8875432 2445778999999999999999999999999998655 456677899999999999999 99999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q psy875 215 EKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKL 264 (480)
Q Consensus 215 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~ 264 (480)
++++.+....++......++..++.++..+|++++|..+++++.++....
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 99999999998888889999999999999999999999999999887665
No 53
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.90 E-value=1.5e-24 Score=193.63 Aligned_cols=149 Identities=21% Similarity=0.222 Sum_probs=117.3
Q ss_pred cCCccchhhhccCCCc-----------CCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875 313 KRAPRSHFLIKRNDKD-----------SNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE 381 (480)
Q Consensus 313 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (480)
.|.||||.++..+..+ ++.. ..+.++++.|+..|+.++|++|++.|++++..+
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d--------------- 67 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN--------------- 67 (239)
T ss_dssp ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCC---------------
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcC---------------
Confidence 4777777776665443 3332 445799999999999999999999999988754
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCC-cHHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGW-LPLHEA 460 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~-tpl~~A 460 (480)
..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++ ..+..|. ||||+|
T Consensus 68 -~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~t~l~~a 144 (239)
T 1ycs_B 68 -DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF--AMTYSDMQTAADKC 144 (239)
T ss_dssp -TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCSSSCCCHHHHC
T ss_pred -CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--eecCCCCcchHHHH
Confidence 349999999999999999999999999999999999999999999999999999999999999 4576666 999999
Q ss_pred --HHcCCHHHHHHHHHcCCCCC
Q psy875 461 --ANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 461 --~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+..|+.+++++|+++|++++
T Consensus 145 ~~~~~g~~~~~~~Ll~~~a~~~ 166 (239)
T 1ycs_B 145 EEMEEGYTQCSQFLYGVQEKMG 166 (239)
T ss_dssp CSSSTTCCCHHHHHHHHHHHTT
T ss_pred HHhhhccHHHHHHHHHhhhccc
Confidence 78899999999999998763
No 54
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.90 E-value=1.9e-23 Score=181.39 Aligned_cols=146 Identities=22% Similarity=0.234 Sum_probs=132.7
Q ss_pred cchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcC
Q psy875 317 RSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARG 396 (480)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~ 396 (480)
.+..++..++.+++..+..+.++++.|+..|+.++|++|+++|++++..+. .|.||||+|+..|
T Consensus 20 ~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------------~g~t~l~~A~~~~ 83 (201)
T 3hra_A 20 KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS----------------ISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------------TSCCHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----------------CCCCHHHHHHHcC
Confidence 344456667778998889999999999999999999999999999987543 4999999999999
Q ss_pred CHHHHHHHH-hcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCCcHHHHHHHcCC-----HHHH
Q psy875 397 NLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG-ADPNDKVQDSAGWLPLHEAANHGH-----TDIV 469 (480)
Q Consensus 397 ~~~~~~~ll-~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~g~tpl~~A~~~~~-----~~~~ 469 (480)
+.+++++|+ ..+++++.++..|.||||+|+..|+.+++++|+++| ++++ .+|..|.||||+|+..++ .+++
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID--FQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT--CCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC--CCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 999999999 557899999999999999999999999999999999 8999 569999999999999998 9999
Q ss_pred HHHHHcCCCCC
Q psy875 470 QALVSAGAEVS 480 (480)
Q Consensus 470 ~~Ll~~ga~~~ 480 (480)
++|+++|++++
T Consensus 162 ~~Ll~~ga~~~ 172 (201)
T 3hra_A 162 KLLMENGADQS 172 (201)
T ss_dssp HHHHHTTCCTT
T ss_pred HHHHHCCCCCC
Confidence 99999999985
No 55
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.90 E-value=3e-24 Score=194.09 Aligned_cols=147 Identities=23% Similarity=0.214 Sum_probs=125.4
Q ss_pred CCcCCC----CcCCCchHHHHHHhh---CcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCH
Q psy875 326 DKDSNL----NLYNIESITISRNRL---GAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNL 398 (480)
Q Consensus 326 ~~~~~~----~~~~~~~~~~~a~~~---~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~ 398 (480)
+.+++. .+..+.+++++|+.. |+.++|++|++.|++++....... ......+..|.||||+|+..|+.
T Consensus 29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~-----~~~~~~d~~g~t~L~~A~~~g~~ 103 (256)
T 2etb_A 29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN-----AQCTDEFYQGHSALHIAIEKRSL 103 (256)
T ss_dssp TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG-----CCCCSTTTTTCCHHHHHHHTTCH
T ss_pred CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc-----cccccccccCCCHHHHHHHcCCH
Confidence 344555 677899999999999 999999999999998874321100 01112234599999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCC-------------CChHHHHHHHcCCHHHHHHHHH---cCCCCCCccCCCCCCcHHHHHHH
Q psy875 399 TLVQSLLKQGHPVKVQDSA-------------GWLPLHEAANHGHTDIVQALVS---AGADPNDKVQDSAGWLPLHEAAN 462 (480)
Q Consensus 399 ~~~~~ll~~g~~~~~~~~~-------------g~t~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~~~g~tpl~~A~~ 462 (480)
+++++|+++|++++.++.. |+||||+|+..|+.+++++|++ +|++++ .+|..|+||||+|+.
T Consensus 104 ~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n--~~d~~g~TpLh~A~~ 181 (256)
T 2etb_A 104 QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLE--ATDSLGNTVLHALVM 181 (256)
T ss_dssp HHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT--CCCTTSCCHHHHHHH
T ss_pred HHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcC--ccCCCCCCHHHHHHH
Confidence 9999999999999999876 9999999999999999999999 999999 669999999999999
Q ss_pred --cCCHH-------HHHHHHHcCCCC
Q psy875 463 --HGHTD-------IVQALVSAGAEV 479 (480)
Q Consensus 463 --~~~~~-------~~~~Ll~~ga~~ 479 (480)
.++.+ ++++|+++|+++
T Consensus 182 ~~~~~~~~~~~~~~iv~~Ll~~ga~~ 207 (256)
T 2etb_A 182 IADNSPENSALVIHMYDGLLQMGARL 207 (256)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCchhhHHHHHHHHHHHHcCCCc
Confidence 88988 999999999876
No 56
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.90 E-value=1.9e-23 Score=199.37 Aligned_cols=165 Identities=21% Similarity=0.225 Sum_probs=98.8
Q ss_pred cCCccchhhhccCC-------------------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc-
Q psy875 313 KRAPRSHFLIKRND-------------------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL- 372 (480)
Q Consensus 313 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~- 372 (480)
.|.||||+|+..+. .++|..+..+.++|+.|+..|+.++|++|+++|++++..+..+.+.
T Consensus 124 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L 203 (373)
T 2fo1_E 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL 203 (373)
T ss_dssp SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHH
Confidence 56777777765443 3455566677777777777777777777777777776543221110
Q ss_pred ----------------cCC---CccccCCCCCchHHHHHHHcC---CHHHHHHHHhcCCCCCC--------CCCCCChHH
Q psy875 373 ----------------ETP---TTSLLEKPRGETALHVAAARG---NLTLVQSLLKQGHPVKV--------QDSAGWLPL 422 (480)
Q Consensus 373 ----------------~~~---~~~~~~~~~g~~~l~~a~~~~---~~~~~~~ll~~g~~~~~--------~~~~g~t~l 422 (480)
... ......+..|.||||+|+..+ +.+++++|++.|++++. .|..|+|||
T Consensus 204 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~L 283 (373)
T 2fo1_E 204 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283 (373)
T ss_dssp HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred HHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHH
Confidence 111 223334455666666666655 55666666666666554 344566666
Q ss_pred HHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 423 HEAANHGHTDIVQALVSAG-ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 423 ~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
|+|+..|+.+++++|+++| ++++ .+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 284 h~A~~~g~~~~v~~Ll~~~~~~~n--~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~ 339 (373)
T 2fo1_E 284 HYAAQVSNMPIVKYLVGEKGSNKD--KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 339 (373)
T ss_dssp HHHHSSCCHHHHHHHHHHSCCCTT--CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred HHHHHhCCHHHHHHHHHhcCCCcc--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 6666666666666666553 5665 34566666666666666666666666666655
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=191.87 Aligned_cols=148 Identities=24% Similarity=0.241 Sum_probs=131.8
Q ss_pred hccCCccchhhhccCC------------CcCCCCcCCCchHHHHHH-----hhCcHHHHHHHHhcCCchhhhhhhhcccc
Q psy875 311 NRKRAPRSHFLIKRND------------KDSNLNLYNIESITISRN-----RLGAQEVRKLLSLLNADLLVHLNLSATLE 373 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~a~-----~~~~~~~v~~L~~~g~~~~~~~~~~~~~~ 373 (480)
+..|.||||+|+..+. .+++..+..+.++++.|+ ..++.+++++|++.|.+++..+
T Consensus 108 d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~------- 180 (276)
T 4hbd_A 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKAS------- 180 (276)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCT-------
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccC-------
Confidence 3458888888765543 377788888899999998 7799999999999997776543
Q ss_pred CCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCC
Q psy875 374 TPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS-AGADPNDKVQDSA 452 (480)
Q Consensus 374 ~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~ 452 (480)
..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|++ .|++++ ..|..
T Consensus 181 ---------~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~ 249 (276)
T 4hbd_A 181 ---------QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS--LTDRD 249 (276)
T ss_dssp ---------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT--CCCTT
T ss_pred ---------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc--CcCCC
Confidence 349999999999999999999999999999999999999999999999999999999 899999 56999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcC
Q psy875 453 GWLPLHEAANHGHTDIVQALVSAG 476 (480)
Q Consensus 453 g~tpl~~A~~~~~~~~~~~Ll~~g 476 (480)
|.||||+|+..|+.+++++|++++
T Consensus 250 g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 250 GSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999999999999999999999876
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.8e-21 Score=180.64 Aligned_cols=228 Identities=18% Similarity=0.286 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--h--ccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--A--RNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ 108 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~--~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~ 108 (480)
.+..+.++..+|.++...|++++|+.++++++++. . .+.+....++..+|.+|... |++++|+.++++++.+...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKDAANLLNDALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999986 2 25677888999999995555 9999999999999998766
Q ss_pred C--CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc------ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875 109 N--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD------LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR 180 (480)
Q Consensus 109 ~--~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~ 180 (480)
. ++.+....++.++|.+|...|++++|+.+|++++... ..+....++.++|.+|...|++++|+.+++++++
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 5667788999999999999999999999999998763 2355678899999999999999999999999999
Q ss_pred hhhc----CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC-------------------------------
Q psy875 181 LHAR----NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK------------------------------- 225 (480)
Q Consensus 181 ~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~------------------------------- 225 (480)
+... +.+....++..+|.++...|+ +++|+.++++++.+.....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGK-FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 8554 377888999999999999999 9999999999998765421
Q ss_pred ------------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875 226 ------------DDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE 262 (480)
Q Consensus 226 ------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~ 262 (480)
..+....++..+|.+|..+|++++|..+++++.++..
T Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 4577788999999999999999999999999998754
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.90 E-value=3.7e-23 Score=174.78 Aligned_cols=127 Identities=27% Similarity=0.228 Sum_probs=116.5
Q ss_pred CchHHHHHHhhCcHHHHHHHHhcCCc-hhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875 336 IESITISRNRLGAQEVRKLLSLLNAD-LLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ 414 (480)
Q Consensus 336 ~~~~~~~a~~~~~~~~v~~L~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~ 414 (480)
..++++.|+..|+.++++.|++.|.+ ++.. +..|.||||+|+..|+.+++++|+++|++++.+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~----------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 65 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP----------------DERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC----------------CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCC----------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh
Confidence 35788999999999999999999977 4433 345999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 66 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 129 (172)
T 3v30_A 66 AKERESALSLASTGGYTDIVGLLLERDVDIN--IYDWNGGTPLLYAVRGNHVKCVEALLARGADLT 129 (172)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred cccCCCHHHHHHHCCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence 9999999999999999999999999999999 569999999999999999999999999999975
No 60
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.90 E-value=7.7e-24 Score=194.21 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=130.7
Q ss_pred CCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCC
Q psy875 314 RAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEK 382 (480)
Q Consensus 314 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 382 (480)
|.||||+|+..+ +.+++..+..+.+++++|+..|+.+++++|+++|++++..+.
T Consensus 62 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~--------------- 126 (285)
T 3kea_A 62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK--------------- 126 (285)
T ss_dssp TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSS---------------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCC---------------
Confidence 667777766554 556777788899999999999999999999999999987643
Q ss_pred CCC-chHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcH-HHHH
Q psy875 383 PRG-ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLP-LHEA 460 (480)
Q Consensus 383 ~~g-~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tp-l~~A 460 (480)
.| .||||+|+..|+.+++++|+++|+++... ..|+||||+|+..|+.+++++|+++|++++ ..|..|.|| ||+|
T Consensus 127 -~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~~L~~A 202 (285)
T 3kea_A 127 -TGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIKLA 202 (285)
T ss_dssp -SGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTC--TTCCCBCCTTHHHH
T ss_pred -CCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCC--cccCCCCChHHHHH
Confidence 37 79999999999999999999999887332 289999999999999999999999999999 569999998 9999
Q ss_pred HHcCCHHHHHHHHHcCCCCC
Q psy875 461 ANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 461 ~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+..|+.+++++|+++|++++
T Consensus 203 ~~~~~~~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 203 IDNKDIEMLQALFKYDINIY 222 (285)
T ss_dssp HHHTCHHHHHHHTTSCBCST
T ss_pred HHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999985
No 61
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.90 E-value=5e-23 Score=175.21 Aligned_cols=128 Identities=33% Similarity=0.416 Sum_probs=116.2
Q ss_pred CCchHHHHHHhhCcHHHHHHHHhc-CCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875 335 NIESITISRNRLGAQEVRKLLSLL-NADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV 413 (480)
Q Consensus 335 ~~~~~~~~a~~~~~~~~v~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~ 413 (480)
...++++.|+..|+.++|++|++. +.+++.. +..|.||||+|+..|+.+++++|++.|++++.
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~----------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 67 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQG----------------DDHGFSPLHWACREGRSAVVEMLIMRGARINV 67 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCC----------------CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCccccccc----------------CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC
Confidence 456788999999999999999998 4555543 34599999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 132 (179)
T 3f6q_A 68 MNRGDDTPLHLAASHGHRDIVQKLLQYKADIN--AVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132 (179)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence 99999999999999999999999999999999 569999999999999999999999999999875
No 62
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.90 E-value=2.6e-23 Score=187.50 Aligned_cols=147 Identities=25% Similarity=0.231 Sum_probs=129.9
Q ss_pred cCCccchhhhcc------------CCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcccc
Q psy875 313 KRAPRSHFLIKR------------NDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLL 380 (480)
Q Consensus 313 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 380 (480)
.|.||||+++.. +..+++..+..+.++++.|+..|+.+++++|++.|++++..+
T Consensus 89 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d-------------- 154 (253)
T 1yyh_A 89 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-------------- 154 (253)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBC--------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcC--------------
Confidence 467777777654 334667777888999999999999999999999999988654
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460 (480)
Q Consensus 381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A 460 (480)
..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.||+++|
T Consensus 155 --~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~~A 230 (253)
T 1yyh_A 155 --DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPRDIA 230 (253)
T ss_dssp --TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHH
T ss_pred --CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc--ccccCCCCHHHHH
Confidence 349999999999999999999999999999999999999999999999999999999999999 6699999999999
Q ss_pred HHcCCHHHHHHHHHcCC
Q psy875 461 ANHGHTDIVQALVSAGA 477 (480)
Q Consensus 461 ~~~~~~~~~~~Ll~~ga 477 (480)
+..|+.+|+++|.....
T Consensus 231 ~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 231 QERMHHDIVRLLDLEHH 247 (253)
T ss_dssp HHTTCHHHHHHHHC---
T ss_pred HHcCCHHHHHHHHHHhh
Confidence 99999999999987543
No 63
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.90 E-value=8.2e-24 Score=201.60 Aligned_cols=130 Identities=19% Similarity=0.135 Sum_probs=121.9
Q ss_pred CcCCCchHHHHHHhhC--cHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCC
Q psy875 332 NLYNIESITISRNRLG--AQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGH 409 (480)
Q Consensus 332 ~~~~~~~~~~~a~~~~--~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~ 409 (480)
.+..+.+++++|+..| +.++|++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|+
T Consensus 134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d----------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 197 (364)
T 3ljn_A 134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD----------------KADETPLMRAMEFRNREALDLMMDTVP 197 (364)
T ss_dssp EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC----------------CCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 5667889999999999 9999999999999998754 349999999999999999999999999
Q ss_pred C-----CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 410 P-----VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 410 ~-----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
+ ++..|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 198 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~--~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 198 SKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN--MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF 270 (364)
T ss_dssp CSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTT--CCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred ccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHhChHHHHHHHHHcCCch
Confidence 8 99999999999999999999999999999999999 66999999999999999999999999998753
No 64
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.90 E-value=6e-24 Score=187.98 Aligned_cols=132 Identities=28% Similarity=0.277 Sum_probs=122.1
Q ss_pred CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q psy875 331 LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP 410 (480)
Q Consensus 331 ~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~ 410 (480)
..+.++.++++.|+..|+.++|++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d----------------~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPN----------------EEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCC----------------CCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 456677889999999999999999999999988753 3599999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCC-CCCCcHHHHH--HHcCCHHHHHHHHHcCCCCC
Q psy875 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQD-SAGWLPLHEA--ANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 411 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-~~g~tpl~~A--~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+|.+|..|+||||+|+..|+.+++++|+++|++++. .+ ..|.||||+| +..|+.+++++|+++|++++
T Consensus 80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~--~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~ 150 (229)
T 2vge_A 80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA--TTLSDGATAFEKCDPYREGYADCATYLADVEQSMG 150 (229)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC--CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc--ccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc
Confidence 999999999999999999999999999999999994 45 6999999999 99999999999999998874
No 65
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.90 E-value=7.4e-23 Score=193.89 Aligned_cols=167 Identities=26% Similarity=0.222 Sum_probs=140.3
Q ss_pred ccCCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhcc---------
Q psy875 312 RKRAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSAT--------- 371 (480)
Q Consensus 312 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~--------- 371 (480)
..|.||||+++..+ +.+++..+..+.++++.|+..|+.+++++|+++|++++........
T Consensus 89 ~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~ 168 (351)
T 3utm_A 89 KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE 168 (351)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHH
T ss_pred CCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhh
Confidence 34778888877654 4566777788899999999999999999999999998764322111
Q ss_pred -----------------------------ccCCCccccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCC
Q psy875 372 -----------------------------LETPTTSLLEKPRGETALHVAAAR---GNLTLVQSLLKQGHPVKVQDSAGW 419 (480)
Q Consensus 372 -----------------------------~~~~~~~~~~~~~g~~~l~~a~~~---~~~~~~~~ll~~g~~~~~~~~~g~ 419 (480)
+.........+..|.||||+|+.. +..+++++|++.|++++.+|..|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 248 (351)
T 3utm_A 169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM 248 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCC
T ss_pred hHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCC
Confidence 011122223456699999999999 558999999999999999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 420 LPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 420 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 249 t~L~~A~~~g~~~~v~~Ll~~ga~~n--~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~ 307 (351)
T 3utm_A 249 TPLHVAAERAHNDVMEVLHKHGAKMN--ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999 669999999999999999999999999999975
No 66
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.90 E-value=1e-23 Score=192.45 Aligned_cols=163 Identities=22% Similarity=0.211 Sum_probs=135.1
Q ss_pred hhccCCccchhhhccCCCcCC-------------------CCcCCCchHHHHHHhh---CcHHHHHHHHhcCCchhhhhh
Q psy875 310 TNRKRAPRSHFLIKRNDKDSN-------------------LNLYNIESITISRNRL---GAQEVRKLLSLLNADLLVHLN 367 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~a~~~---~~~~~v~~L~~~g~~~~~~~~ 367 (480)
.+..|.||||.|+..+..+.- ..+..+.++|++|+.. |+.++|++|++.|++++....
T Consensus 9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 455688899999888877642 2256889999999986 999999999999987543211
Q ss_pred hhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC--------------CCChHHHHHHHcCCHHH
Q psy875 368 LSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDS--------------AGWLPLHEAANHGHTDI 433 (480)
Q Consensus 368 ~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~--------------~g~t~l~~a~~~~~~~~ 433 (480)
.. . ......+..|.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.++
T Consensus 89 ~i---~--~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 163 (273)
T 2pnn_A 89 FV---N--ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163 (273)
T ss_dssp HH---T--CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred Hh---h--cccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 00 0 00111244699999999999999999999999999999987 79999999999999999
Q ss_pred HHHHHH---cCCCCCCccCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCC
Q psy875 434 VQALVS---AGADPNDKVQDSAGWLPLHEAANHGH---------TDIVQALVSAGAEV 479 (480)
Q Consensus 434 ~~~Ll~---~g~~~~~~~~~~~g~tpl~~A~~~~~---------~~~~~~Ll~~ga~~ 479 (480)
+++|++ +|++++ .+|..|+||||+|+..|+ .+++++|+++|+++
T Consensus 164 v~~Ll~~~~~gad~~--~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 219 (273)
T 2pnn_A 164 VKFLLQNSWQPADIS--ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL 219 (273)
T ss_dssp HHHHHHCSSCCCCTT--CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCce--eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhc
Confidence 999999 999999 669999999999999998 89999999999876
No 67
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.90 E-value=4.1e-23 Score=201.81 Aligned_cols=150 Identities=30% Similarity=0.395 Sum_probs=116.8
Q ss_pred cCCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875 313 KRAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE 381 (480)
Q Consensus 313 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (480)
.|.||+|+++..+ +.+++..+..+.++++.|+..|+.++|++|+++|++++..+
T Consensus 211 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--------------- 275 (437)
T 1n11_A 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN--------------- 275 (437)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC---------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCC---------------
Confidence 3566666665543 34556666777788888888888888888888888776543
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~ 461 (480)
..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+
T Consensus 276 -~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~L~~A~ 352 (437)
T 1n11_A 276 -KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN--AKTKLGYSPLHQAA 352 (437)
T ss_dssp -TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT--CCCTTSCCHHHHHH
T ss_pred -CCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCC--CCCCCCCCHHHHHH
Confidence 347888888888888888888888888888888888888888888888888888888888888 55778888888888
Q ss_pred HcCCHHHHHHHHHcCCCCC
Q psy875 462 NHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 462 ~~~~~~~~~~Ll~~ga~~~ 480 (480)
..|+.+++++|+++|++++
T Consensus 353 ~~g~~~iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 353 QQGHTDIVTLLLKNGASPN 371 (437)
T ss_dssp HTTCHHHHHHHHHTTCCSC
T ss_pred HCChHHHHHHHHHCcCCCC
Confidence 8888888888888888764
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.90 E-value=2.5e-21 Score=185.71 Aligned_cols=216 Identities=13% Similarity=0.157 Sum_probs=187.7
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC-chH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD-DKL 114 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~-~~~ 114 (480)
..++.+|.++...|++++|+.+|++|+++. .++.+..+.++..+|.+|+.. |++++|+.++++|+.+.+..++ .+.
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCccchHH
Confidence 356679999999999999999999999985 344555788999999996555 9999999999999999998887 788
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-Cc-HH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NF-PE 188 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~-~~ 188 (480)
.+.++.++|.+|..+|++++|+.+|++++...+. +..+.++.++|.+|..+|++++|+.++++++++... .. +.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 8899999999999999999999999999876543 345778999999999999999999999999998665 23 77
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHH
Q psy875 189 AVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK---FTELEQIKTE 256 (480)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 256 (480)
.+.++.++|.++..+|+ +++|..++++++.+.+..+++..... +..++.+|...|+ +++|+.++++
T Consensus 263 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGK-IDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 79999999999999999 99999999999999998888776655 6779999999999 5555555543
No 69
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.90 E-value=4.8e-23 Score=172.85 Aligned_cols=130 Identities=32% Similarity=0.459 Sum_probs=116.8
Q ss_pred cCCCchHHHHHHhhCcHHHHHHHHhcCC-chhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC
Q psy875 333 LYNIESITISRNRLGAQEVRKLLSLLNA-DLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPV 411 (480)
Q Consensus 333 ~~~~~~~~~~a~~~~~~~~v~~L~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~ 411 (480)
+..+.++++.|+..|+.++++.|++.+. +++. .+..|.||||+|+..|+.+++++|+++|+++
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 68 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD----------------IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCC----------------TTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccc----------------cccCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence 3456789999999999999999998543 3332 2345899999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 412 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 135 (165)
T 3twr_A 69 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN--VADLWKFTPLHEAAAKGKYEICKLLLQHGADPT 135 (165)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence 9999999999999999999999999999999999 569999999999999999999999999999875
No 70
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.90 E-value=3.1e-23 Score=173.46 Aligned_cols=126 Identities=33% Similarity=0.397 Sum_probs=117.6
Q ss_pred CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875 335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ 414 (480)
Q Consensus 335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~ 414 (480)
...++++.|+..|+.+++++|+++|++++..+ ..|.||||+|+. |+.+++++|++.|++++.+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~----------------~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~ 66 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQN----------------GFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCC----------------TTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCC
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccC----------------ccCccHHHHHHc-CcHHHHHHHHHcCCCCCCC
Confidence 45689999999999999999999999987653 349999999999 9999999999999999999
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 67 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 129 (162)
T 1ihb_A 67 DRTGFAVIHDAARAGFLDTLQTLLEFQADVN--IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129 (162)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999 56999999999999999999999999999973
No 71
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.89 E-value=2.5e-23 Score=198.23 Aligned_cols=166 Identities=18% Similarity=0.146 Sum_probs=136.2
Q ss_pred cCCccchhhhccCCCcC---------CCCcCCCchHHHHHHhhCcHHHHHHHHhc----CCchhhhhhhhccc-cCCCcc
Q psy875 313 KRAPRSHFLIKRNDKDS---------NLNLYNIESITISRNRLGAQEVRKLLSLL----NADLLVHLNLSATL-ETPTTS 378 (480)
Q Consensus 313 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~~~~~~v~~L~~~----g~~~~~~~~~~~~~-~~~~~~ 378 (480)
.|.||||+|+..+..++ +.....+.++++.|+..|+.++|++|++. |++++......... ......
T Consensus 52 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (364)
T 3ljn_A 52 FGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGS 131 (364)
T ss_dssp TCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhcc
Confidence 47888888887765543 33445778999999999999999999999 77776522111000 001111
Q ss_pred ccCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC-----CCCccCCC
Q psy875 379 LLEKPRGETALHVAAARG--NLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD-----PNDKVQDS 451 (480)
Q Consensus 379 ~~~~~~g~~~l~~a~~~~--~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~~ 451 (480)
...+..|.||||+|+..| +.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++ ++ ..|.
T Consensus 132 ~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~~~~ 209 (364)
T 3ljn_A 132 HVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD--YANK 209 (364)
T ss_dssp EEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT--CCCT
T ss_pred ccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc--ccCC
Confidence 223456999999999999 99999999999999999999999999999999999999999999999 88 5699
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 452 AGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 452 ~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
.|.||||+|+..|+.+++++|+++|++++
T Consensus 210 ~g~t~L~~A~~~g~~~~v~~Ll~~gad~~ 238 (364)
T 3ljn_A 210 QGNSHLHWAILINWEDVAMRFVEMGIDVN 238 (364)
T ss_dssp TCCCTTHHHHTTTCHHHHHHHHTTTCCTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999985
No 72
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.89 E-value=1.2e-22 Score=186.46 Aligned_cols=150 Identities=24% Similarity=0.180 Sum_probs=131.4
Q ss_pred cCCccchhhhccCC-----------CcCCCC----------cCCCchHHHHHHhhCcHHHHHHHHhc-CCchhhhhhhhc
Q psy875 313 KRAPRSHFLIKRND-----------KDSNLN----------LYNIESITISRNRLGAQEVRKLLSLL-NADLLVHLNLSA 370 (480)
Q Consensus 313 ~~~~~~~~~~~~~~-----------~~~~~~----------~~~~~~~~~~a~~~~~~~~v~~L~~~-g~~~~~~~~~~~ 370 (480)
.|.||+|+++..+. .+++.. ...+.++++.|+..|+.+++++|++. |++++..+
T Consensus 104 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~---- 179 (285)
T 1wdy_A 104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD---- 179 (285)
T ss_dssp TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCC----
T ss_pred ccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccC----
Confidence 46677777665543 334433 55677899999999999999999987 88887653
Q ss_pred cccCCCccccCCCCCchHHHHHHHcCC----HHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCC
Q psy875 371 TLETPTTSLLEKPRGETALHVAAARGN----LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS-AGADPN 445 (480)
Q Consensus 371 ~~~~~~~~~~~~~~g~~~l~~a~~~~~----~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~ 445 (480)
..|.||||+|+..++ .+++++|++.|++++.+|..|.||||+|+..|+.+++++|++ .|++++
T Consensus 180 ------------~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~ 247 (285)
T 1wdy_A 180 ------------NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 247 (285)
T ss_dssp ------------TTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT
T ss_pred ------------CCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcc
Confidence 349999999999999 899999999999999999999999999999999999999999 899999
Q ss_pred CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 446 ~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 248 --~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 248 --DTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280 (285)
T ss_dssp --CCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred --ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 569999999999999999999999999999985
No 73
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.89 E-value=2.4e-23 Score=185.81 Aligned_cols=128 Identities=27% Similarity=0.349 Sum_probs=91.5
Q ss_pred CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875 334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV 413 (480)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~ 413 (480)
..+.++|+.|++.|+.++++.|+++|++++.. +.|.||||.|+..|+.++++.|++.|+++|.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-----------------~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 65 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-----------------PLPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65 (239)
T ss_dssp ---------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCC
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-----------------chhhHHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 45789999999999999999999999999864 2389999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 66 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 130 (239)
T 1ycs_B 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVN--AADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130 (239)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999 669999999999999999999999999999985
No 74
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=8.3e-24 Score=171.54 Aligned_cols=130 Identities=25% Similarity=0.267 Sum_probs=115.5
Q ss_pred CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q psy875 331 LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP 410 (480)
Q Consensus 331 ~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~ 410 (480)
..+..+.++++.|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+++|++
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 68 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD----------------HAGWTPLHEACNHGHLKVVELLLQHKAL 68 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCc
Confidence 456678899999999999999999999999987653 3499999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478 (480)
Q Consensus 411 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 478 (480)
++.+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..+..+++.+|.+.+..
T Consensus 69 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN--AVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence 99999999999999999999999999999999999 6699999999999999999999888877654
No 75
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.89 E-value=1.2e-22 Score=191.43 Aligned_cols=147 Identities=24% Similarity=0.185 Sum_probs=125.6
Q ss_pred hccCCccchhhhcc------------CCCcCCCCcCCCchHHHHHHhhC----cHHHHHHHHhcCCchhhhhhhhccccC
Q psy875 311 NRKRAPRSHFLIKR------------NDKDSNLNLYNIESITISRNRLG----AQEVRKLLSLLNADLLVHLNLSATLET 374 (480)
Q Consensus 311 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~----~~~~v~~L~~~g~~~~~~~~~~~~~~~ 374 (480)
...|.||||+|+.. .+.+++..+..+.++++.++..+ ...++++|+++|++++..+.
T Consensus 165 ~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~------- 237 (337)
T 4g8k_A 165 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE------- 237 (337)
T ss_dssp TTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCG-------
T ss_pred cCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCC-------
Confidence 34578888887654 46677777777777777665433 35688999999999987643
Q ss_pred CCccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCC
Q psy875 375 PTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ-GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAG 453 (480)
Q Consensus 375 ~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g 453 (480)
.|.||||+|+..|+.++++.|+.. |+++|.+|..|+||||+|+..|+.++|++|+++|++++ .
T Consensus 238 ---------~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n--~----- 301 (337)
T 4g8k_A 238 ---------RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD--C----- 301 (337)
T ss_dssp ---------GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST--T-----
T ss_pred ---------CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--C-----
Confidence 499999999999999999999986 89999999999999999999999999999999999988 2
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 454 WLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 454 ~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
.||||+|+..|+.+++++|+++||+||
T Consensus 302 ~~~L~~A~~~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 302 GDLVMTARRNYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred CCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence 369999999999999999999999985
No 76
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.89 E-value=1.8e-23 Score=189.39 Aligned_cols=139 Identities=25% Similarity=0.198 Sum_probs=119.4
Q ss_pred CCCchHHHHHH---hhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q psy875 334 YNIESITISRN---RLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP 410 (480)
Q Consensus 334 ~~~~~~~~~a~---~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~ 410 (480)
..+.++|+.|+ ..|+.++|++|++.|+++....... .......+..|.||||+|+..|+.+++++|++.|++
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~-----~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI-----NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH-----TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh-----cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 55889999999 7899999999999998865432211 011122233599999999999999999999999999
Q ss_pred CCCCC--------------CCCChHHHHHHHcCCHHHHHHHHH---cCCCCCCccCCCCCCcHHHHHHHcCC--------
Q psy875 411 VKVQD--------------SAGWLPLHEAANHGHTDIVQALVS---AGADPNDKVQDSAGWLPLHEAANHGH-------- 465 (480)
Q Consensus 411 ~~~~~--------------~~g~t~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~~~g~tpl~~A~~~~~-------- 465 (480)
++.++ ..|+||||+|+..|+.+++++|++ +|++++ .+|..|+||||+|+..++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~--~~d~~g~TpLh~A~~~~~~~~~~~~~ 196 (260)
T 3jxi_A 119 VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR--RQDSRGNTVLHALVAIADNTRENTKF 196 (260)
T ss_dssp TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT--CCCTTSCCHHHHHHHHCCSSHHHHHH
T ss_pred cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCc--ccCCCCCcHHHHHHHhccCchhHHHH
Confidence 99998 689999999999999999999999 999999 669999999999998887
Q ss_pred -HHHHHHHHHcCCCC
Q psy875 466 -TDIVQALVSAGAEV 479 (480)
Q Consensus 466 -~~~~~~Ll~~ga~~ 479 (480)
.+++++|+++|+++
T Consensus 197 ~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 197 VTKMYDLLLIKCAKL 211 (260)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccc
Confidence 79999999999875
No 77
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.89 E-value=1.5e-22 Score=193.18 Aligned_cols=157 Identities=24% Similarity=0.192 Sum_probs=133.7
Q ss_pred cCCccchhhhccCC--------------CcCCCCcCCCchHHHHHHhhC---cHHHHHHHHhcCCchhhhhhhhccccCC
Q psy875 313 KRAPRSHFLIKRND--------------KDSNLNLYNIESITISRNRLG---AQEVRKLLSLLNADLLVHLNLSATLETP 375 (480)
Q Consensus 313 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~a~~~~---~~~~v~~L~~~g~~~~~~~~~~~~~~~~ 375 (480)
.|.||||+++..+. .+++..+..+.+++++|+..+ +.+++++|+++|++++.....
T Consensus 198 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~------- 270 (373)
T 2fo1_E 198 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA------- 270 (373)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG-------
T ss_pred CCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccc-------
Confidence 47788888876654 456667788889999999887 899999999999998763221
Q ss_pred CccccCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCC
Q psy875 376 TTSLLEKPRGETALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGW 454 (480)
Q Consensus 376 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~ 454 (480)
.....+..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.
T Consensus 271 -~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~--~~d~~g~ 347 (373)
T 2fo1_E 271 -RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE--AVDATDH 347 (373)
T ss_dssp -GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CCCSSSC
T ss_pred -ccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--CCCCCCC
Confidence 11223556999999999999999999999885 9999999999999999999999999999999999999 5699999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 455 LPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 455 tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
||||+|+..|+.+++++|+++|++.
T Consensus 348 t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 348 TARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTC---
T ss_pred CHHHHHHHcCCHHHHHHHHhcCccc
Confidence 9999999999999999999999874
No 78
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.88 E-value=8.1e-23 Score=187.40 Aligned_cols=153 Identities=20% Similarity=0.167 Sum_probs=130.1
Q ss_pred hhhccCCccchhhhccCCCcC---------CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875 309 RTNRKRAPRSHFLIKRNDKDS---------NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSL 379 (480)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~ 379 (480)
..+..|.||||+|+..+..++ +.+..++.+++++|+..|+.++|++|+++|++++..+
T Consensus 26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d------------- 92 (285)
T 3kea_A 26 KADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFD------------- 92 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCC-------------
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC-------------
Confidence 445678999999887765432 2233357899999999999999999999999988653
Q ss_pred cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC-ChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHH
Q psy875 380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAG-WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLH 458 (480)
Q Consensus 380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~ 458 (480)
..|.||||+|+..|+.+++++|+++|++++.++..| .||||+|+..|+.+++++|+++|+++.. ...|.||||
T Consensus 93 ---~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~~g~t~L~ 166 (285)
T 3kea_A 93 ---DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD---LAILLSCIH 166 (285)
T ss_dssp ---TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC---CSTHHHHHH
T ss_pred ---CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc---ccCCccHHH
Confidence 349999999999999999999999999999999988 7999999999999999999999987752 127999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCC
Q psy875 459 EAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 459 ~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+|+..|+.+++++|+++|++++
T Consensus 167 ~A~~~g~~~~v~~Ll~~gad~n 188 (285)
T 3kea_A 167 ITIKNGHVDMMILLLDYMTSTN 188 (285)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHcChHHHHHHHHHcCCCCC
Confidence 9999999999999999998875
No 79
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.88 E-value=3.1e-23 Score=185.58 Aligned_cols=148 Identities=25% Similarity=0.269 Sum_probs=127.8
Q ss_pred cCCccchhhhccCCC---------------cCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCc
Q psy875 313 KRAPRSHFLIKRNDK---------------DSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTT 377 (480)
Q Consensus 313 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~ 377 (480)
.|.||+|+++..+.. +++..+..+.++++.|+..|+.+++++|++.|++++....
T Consensus 78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~---------- 147 (241)
T 1k1a_A 78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI---------- 147 (241)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc----------
Confidence 467777777655432 5666778889999999999999999999999999886531
Q ss_pred cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHH
Q psy875 378 SLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPL 457 (480)
Q Consensus 378 ~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl 457 (480)
..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||
T Consensus 148 -----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl 220 (241)
T 1k1a_A 148 -----KSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS--LKNCHNDTPL 220 (241)
T ss_dssp -----TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCTT
T ss_pred -----cCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC--CcCCCCCCHH
Confidence 349999999999999999999999999999999999999999999999999999999999999 5699999999
Q ss_pred HHHHHcCCHHHHHHHHHcCC
Q psy875 458 HEAANHGHTDIVQALVSAGA 477 (480)
Q Consensus 458 ~~A~~~~~~~~~~~Ll~~ga 477 (480)
|+|+..|+.++++.|+++++
T Consensus 221 ~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 221 MVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp TTCSSHHHHHHHTC------
T ss_pred HHHHhcCcHHHHhhhccCCC
Confidence 99999999999999999876
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.88 E-value=7.3e-21 Score=182.19 Aligned_cols=218 Identities=15% Similarity=0.107 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC-c
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD-D 112 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~-~ 112 (480)
....++.+|..+...|++++|+.+|++|+++. .++.+..+.++..+|.+|+.. |++++|+.++++|+.+.+..++ .
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM-KQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhCCCch
Confidence 34467889999999999999999999999985 344566788999999996555 9999999999999999988776 5
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-CcH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NFP 187 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~~ 187 (480)
...+.++.++|.+|..+|++++|+.+|++++...+. ...+.++.++|.+|..+|++++|+.++++++++... ..+
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 678899999999999999999999999999876432 345788999999999999999999999999998664 445
Q ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHH
Q psy875 188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK---FTELEQIKTE 256 (480)
Q Consensus 188 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 256 (480)
..+.++.++|.++..+|+ +++|..++++++++.++.+++.... .+..++.+|...++ +.+|+.++++
T Consensus 259 ~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~-~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQ-TQKAFQFIEEGLDHITARSHKFYKE-LFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp GHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCTTCCSCHHH-HHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 558999999999999999 9999999999999988777765544 46788999999999 6666666654
No 81
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.88 E-value=2.2e-22 Score=150.99 Aligned_cols=92 Identities=47% Similarity=0.735 Sum_probs=88.9
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC
Q psy875 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG 464 (480)
Q Consensus 385 g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~ 464 (480)
|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN--AKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHHHHHHcC
Confidence 8999999999999999999999999999999999999999999999999999999999999 56999999999999999
Q ss_pred CHHHHHHHHHcCCC
Q psy875 465 HTDIVQALVSAGAE 478 (480)
Q Consensus 465 ~~~~~~~Ll~~ga~ 478 (480)
+.+++++|+++|++
T Consensus 80 ~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 80 HLEVVKLLLEAGAY 93 (93)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999986
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=1.5e-23 Score=178.63 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=111.7
Q ss_pred CCCchHHHHHHhhCcH----HHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCC------HHHHHH
Q psy875 334 YNIESITISRNRLGAQ----EVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGN------LTLVQS 403 (480)
Q Consensus 334 ~~~~~~~~~a~~~~~~----~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~------~~~~~~ 403 (480)
..+.+|||+|+..|+. +++++|+++|+|++..+ ..|.||||+|+..++ .+++++
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d----------------~~g~TpLh~a~~~~~~~~~~~~~iv~~ 99 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRT----------------KEGTTLFFPLFQGGGNDITGTTELCKI 99 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC----------------TTCCCTHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCC----------------CCCCcHHHHHHHcCCcchhhHHHHHHH
Confidence 5678899999988875 59999999999999764 359999999999886 578999
Q ss_pred HHhcCCCCCCCCCCCC-hHHHHHHHcCC-----HHHHHHHHH-cCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy875 404 LLKQGHPVKVQDSAGW-LPLHEAANHGH-----TDIVQALVS-AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG 476 (480)
Q Consensus 404 ll~~g~~~~~~~~~g~-t~l~~a~~~~~-----~~~~~~Ll~-~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g 476 (480)
|+++|+++|.+|..|+ ||||+|+..+. .+++++|++ +|++++ ..|..|.||||+|+..|+.+++++|.+..
T Consensus 100 Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~--~~d~~G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 100 FLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL--IKDKWGLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp HHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT--CCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc--ccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999 99999999553 569999999 999999 66999999999999999999999998753
No 83
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.88 E-value=3.1e-22 Score=195.60 Aligned_cols=149 Identities=28% Similarity=0.344 Sum_probs=76.8
Q ss_pred cCCccchhhhccCC-----------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875 313 KRAPRSHFLIKRND-----------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE 381 (480)
Q Consensus 313 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (480)
.|.||||+|+..|. .+++..+..+.++++.|+..|+.++|++|+++|++++..+.
T Consensus 13 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-------------- 78 (437)
T 1n11_A 13 SGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK-------------- 78 (437)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT--------------
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC--------------
Confidence 45566666554432 34455555566666666666666666666666666654322
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~ 461 (480)
.|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++++++ ..+..|.||||+|+
T Consensus 79 --~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~~A~ 154 (437)
T 1n11_A 79 --DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--CMTKKGFTPLHVAA 154 (437)
T ss_dssp --TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHHH
T ss_pred --CCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--CCCCCCCCHHHHHH
Confidence 24455555555555555555555555555444445555555555555544444444444444 22444444444444
Q ss_pred HcCCHHHHHHHHHcCCCC
Q psy875 462 NHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 462 ~~~~~~~~~~Ll~~ga~~ 479 (480)
..|+.+++++|+++|+++
T Consensus 155 ~~g~~~~v~~Ll~~g~~~ 172 (437)
T 1n11_A 155 KYGKVRVAELLLERDAHP 172 (437)
T ss_dssp HTTCHHHHHHHHHTTCCT
T ss_pred HcCCHHHHHHHHhCCCCC
Confidence 444444444444444443
No 84
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.9e-20 Score=168.70 Aligned_cols=214 Identities=14% Similarity=0.176 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC-Cch
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK-DDK 113 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~-~~~ 113 (480)
..+.+++.+|.++...|++++|+.+|+++++. . ....++..+|.+|... |++++|+.++++++.+.+... +.+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~----~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL-H----KDITYLNNRAAAEYEK-GEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S----CCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-h----ccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccccchH
Confidence 45789999999999999999999999999999 3 3456788999995554 999999999999999887654 445
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccc------------------------cccHHHHHHHHHHHHHhhccHH
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL------------------------CKDLASCYISLAQTYKDNKQYN 169 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~------------------------~~~~~~~~~~la~~y~~~~~~~ 169 (480)
....++..+|.+|...|++++|+.+|++++...+ .+....++..+|.++...|+++
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 5578999999999999999999999999987432 2455778999999999999999
Q ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH
Q psy875 170 LAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE 249 (480)
Q Consensus 170 ~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (480)
+|+.+|+++++.. +....++..+|.++...|+ +++|+.+++++++. .+....++..+|.++..+|++++
T Consensus 157 ~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 157 NAVKAYTEMIKRA----PEDARGYSNRAAALAKLMS-FPEAIADCNKAIEK------DPNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcC----cccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999984 3346789999999999999 99999999999887 23346788899999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q psy875 250 LEQIKTELKSLEEKLD 265 (480)
Q Consensus 250 A~~~~~~~~~l~~~~~ 265 (480)
|..+++++.++..+..
T Consensus 226 A~~~~~~a~~~~~~~~ 241 (258)
T 3uq3_A 226 ALETLDAARTKDAEVN 241 (258)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhc
Confidence 9999999999887654
No 85
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.88 E-value=7.7e-22 Score=176.01 Aligned_cols=151 Identities=28% Similarity=0.394 Sum_probs=107.1
Q ss_pred cCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhcc-----------------ccCCCccccCCCCCchHHH
Q psy875 328 DSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSAT-----------------LETPTTSLLEKPRGETALH 390 (480)
Q Consensus 328 ~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~l~ 390 (480)
+++..+.++.++++.|+..|+.+++++|+++|++++..+..+.+ +..+......+..|.||||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 55677788899999999999999999999999998875432111 1233333444556677777
Q ss_pred HHHHcCCHHHHHHHHhcC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q psy875 391 VAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIV 469 (480)
Q Consensus 391 ~a~~~~~~~~~~~ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~ 469 (480)
+|+..|+.+++++|++.| .+++..+..|+||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~~ 160 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLHWAAFSGCVDIA 160 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHCCHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCCHHHHHHHCCCHHHH
Confidence 777777777777777766 6666666677777777777777777777777777776 4466677777777777777777
Q ss_pred HHHHHcCCCCC
Q psy875 470 QALVSAGAEVS 480 (480)
Q Consensus 470 ~~Ll~~ga~~~ 480 (480)
++|+++|++++
T Consensus 161 ~~Ll~~g~~~~ 171 (237)
T 3b7b_A 161 EILLAAKCDLH 171 (237)
T ss_dssp HHHHTTTCCTT
T ss_pred HHHHHcCCCCC
Confidence 77777777653
No 86
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.88 E-value=4.7e-22 Score=188.34 Aligned_cols=150 Identities=23% Similarity=0.230 Sum_probs=132.6
Q ss_pred cCCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875 313 KRAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE 381 (480)
Q Consensus 313 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (480)
.|.||||+|+..+ +.+++..+..+.++++.|+..|+.+++++|+++|++++..+
T Consensus 57 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~--------------- 121 (351)
T 3utm_A 57 RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD--------------- 121 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC---------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCC---------------
Confidence 4777777776554 45677788899999999999999999999999999988653
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC----------------------------------------------
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD---------------------------------------------- 415 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~---------------------------------------------- 415 (480)
..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 122 -~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 200 (351)
T 3utm_A 122 -LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200 (351)
T ss_dssp -TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTT
T ss_pred -CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHh
Confidence 349999999999999999999999999987654
Q ss_pred --------CCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 416 --------SAGWLPLHEAANH---GHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 416 --------~~g~t~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
..|.||||+|+.. +..+++++|++.|++++ .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 201 ~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n 274 (351)
T 3utm_A 201 EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN--EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN 274 (351)
T ss_dssp CCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred hcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC--CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 4567999999999 45899999999999999 569999999999999999999999999999985
No 87
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.88 E-value=2.9e-22 Score=183.73 Aligned_cols=153 Identities=25% Similarity=0.307 Sum_probs=136.6
Q ss_pred hhccCCccchhhhccCCC-----------c---CCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCC
Q psy875 310 TNRKRAPRSHFLIKRNDK-----------D---SNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETP 375 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~ 375 (480)
.+..|.||||+|+..+.. + ++..+..+.++|++|+..|+.++|++|+++|++++..+
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~--------- 75 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE--------- 75 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC---------
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC---------
Confidence 345799999999887654 2 56677889999999999999999999999999998654
Q ss_pred CccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC---------------------------------------------
Q psy875 376 TTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP--------------------------------------------- 410 (480)
Q Consensus 376 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~--------------------------------------------- 410 (480)
..|.||||+|+..|+.+++++|++.|++
T Consensus 76 -------~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (282)
T 1oy3_D 76 -------RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWR 148 (282)
T ss_dssp -------TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGG
T ss_pred -------CCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhh
Confidence 3499999999999999999999998765
Q ss_pred --CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 411 --VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS-AGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 411 --~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
++.++..|+||||+|+..|+.+++++|+++|++++ ..+. .|.||||+|+..|+.+++++|+++|++++
T Consensus 149 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~ 219 (282)
T 1oy3_D 149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN--KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219 (282)
T ss_dssp GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred hcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence 67788899999999999999999999999999999 4464 59999999999999999999999999985
No 88
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.88 E-value=8.3e-23 Score=191.18 Aligned_cols=142 Identities=23% Similarity=0.117 Sum_probs=125.0
Q ss_pred hhccCCCcCCC-CcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCC--
Q psy875 321 LIKRNDKDSNL-NLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGN-- 397 (480)
Q Consensus 321 ~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~-- 397 (480)
.+...+.++|. .+..+.++||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+
T Consensus 115 ~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d----------------~~g~TpLh~A~~~g~~~ 178 (327)
T 1sw6_A 115 AFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD----------------NMGESCLVKAVKSVNNY 178 (327)
T ss_dssp HCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCC----------------TTCCCHHHHHHHSSHHH
T ss_pred HHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC----------------CCCCCHHHHHHHhcccc
Confidence 34456788888 78999999999999999999999999999998754 359999999999988
Q ss_pred -HHHHHHHHhcC-CCCCCCCCCCChHHHHHHH----cCCHHHHHHHHHcCC-----------------------------
Q psy875 398 -LTLVQSLLKQG-HPVKVQDSAGWLPLHEAAN----HGHTDIVQALVSAGA----------------------------- 442 (480)
Q Consensus 398 -~~~~~~ll~~g-~~~~~~~~~g~t~l~~a~~----~~~~~~~~~Ll~~g~----------------------------- 442 (480)
.++++.|++.+ ++++.+|..|+||||+|+. .|+.+++++|++.+.
T Consensus 179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g 258 (327)
T 1sw6_A 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258 (327)
T ss_dssp HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence 67788888886 6799999999999999999 899999999988742
Q ss_pred ----------------CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 443 ----------------DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 443 ----------------~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+++ .+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 259 ~t~L~~a~~~~~Ll~~~~n--~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~ 310 (327)
T 1sw6_A 259 KDSILENLDLKWIIANMLN--AQDSNGDTCLNIAARLGNISIVDALLDYGADPF 310 (327)
T ss_dssp -CHHHHHCSHHHHHHHTTT--CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT
T ss_pred CChhHHHHHHHHHHHhCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence 466 568899999999999999999999999999985
No 89
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=1.4e-22 Score=160.98 Aligned_cols=112 Identities=26% Similarity=0.316 Sum_probs=102.3
Q ss_pred CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875 334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV 413 (480)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~ 413 (480)
..+.++++.|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 68 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL----------------EGGRKPLHYAADCGQLEILEFLLLKGADINA 68 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCC----------------TTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccC----------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence 356689999999999999999999999987654 3499999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHc
Q psy875 414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANH 463 (480)
Q Consensus 414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~ 463 (480)
+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.||||+|...
T Consensus 69 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKT--VKGPDGLTAFEATDNQ 116 (123)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHCCCH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHhCCH
Confidence 99999999999999999999999999999999 5699999999999543
No 90
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=2.2e-21 Score=170.47 Aligned_cols=198 Identities=13% Similarity=0.074 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
+.+++.+|.++...|++++|+..|+++++. .|....++..+|.+| ...|++++|+.++++++++.+.. .
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~~~P~~------~ 73 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE----NPQDPEALYWLARTQ-LKLGLVNPALENGKTLVARTPRY------L 73 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----SSSCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTC------H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCc------H
Confidence 457899999999999999999999999998 777788899999995 45599999999999999985432 5
Q ss_pred HHHHHHHHHHHhc-----------CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC
Q psy875 117 TVMRSIKKLYKKH-----------DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN 185 (480)
Q Consensus 117 ~~~~~l~~~y~~~-----------~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~ 185 (480)
.++.++|.++..+ |++++|+..|++++...| ....++.++|.+|..+|++++|+..|++++++.
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 148 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--RYAPLHLQRGLVYALLGERDKAEASLKQALALE--- 148 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---
Confidence 6788999999999 999999999999997765 445789999999999999999999999999994
Q ss_pred cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 186 FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 186 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
..+.++.++|.++..+|+ +++|+..|++++++ .|....++..++.++..+|++++|...++++..
T Consensus 149 --~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 149 --DTPEIRSALAELYLSMGR-LDEALAQYAKALEQ------APKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp --CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH------STTCHHHHHHHHHHHTC----------------
T ss_pred --cchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 346788999999999999 99999999999987 444557888999999999999999999987653
No 91
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.88 E-value=2.9e-22 Score=188.69 Aligned_cols=151 Identities=24% Similarity=0.170 Sum_probs=127.8
Q ss_pred ccCCccchhhhccCCC-----------cCC----------CCcCCCchHHHHHHhhCcHHHHHHHHh-cCCchhhhhhhh
Q psy875 312 RKRAPRSHFLIKRNDK-----------DSN----------LNLYNIESITISRNRLGAQEVRKLLSL-LNADLLVHLNLS 369 (480)
Q Consensus 312 ~~~~~~~~~~~~~~~~-----------~~~----------~~~~~~~~~~~~a~~~~~~~~v~~L~~-~g~~~~~~~~~~ 369 (480)
..|.||+|+++..+.. +++ .....+.++|+.|+..|+.++|++|++ .|++++..+.
T Consensus 123 ~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~-- 200 (337)
T 4g8k_A 123 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN-- 200 (337)
T ss_dssp TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCT--
T ss_pred cCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCC--
Confidence 3477777777655432 333 223457789999999999999999996 5999987543
Q ss_pred ccccCCCccccCCCCCchHHHHHHHcCC----HHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCC
Q psy875 370 ATLETPTTSLLEKPRGETALHVAAARGN----LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA-GADP 444 (480)
Q Consensus 370 ~~~~~~~~~~~~~~~g~~~l~~a~~~~~----~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~ 444 (480)
.|.||+|.++..+. ..++++|+++|+++|.+|..|+||||+|+..|+.++++.|+.. |+++
T Consensus 201 --------------~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v 266 (337)
T 4g8k_A 201 --------------MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 266 (337)
T ss_dssp --------------TSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT
T ss_pred --------------CCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc
Confidence 49999998887654 4688999999999999999999999999999999999999985 8999
Q ss_pred CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 445 ~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+ .+|..|+||||+|+..|+.+++++|+++||++|
T Consensus 267 n--~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n 300 (337)
T 4g8k_A 267 N--DTDSDGKTALLLAVELKLKKIAELLCKRGASTD 300 (337)
T ss_dssp T--CBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred c--CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 9 669999999999999999999999999999985
No 92
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.87 E-value=2.9e-22 Score=182.75 Aligned_cols=134 Identities=25% Similarity=0.289 Sum_probs=124.3
Q ss_pred CCCCcCCCchHHHHHHhhCcHHHHHHHHhcCC-chhhhhhhhccccCCCccccCCCCCchHHHHHH-----HcCCHHHHH
Q psy875 329 SNLNLYNIESITISRNRLGAQEVRKLLSLLNA-DLLVHLNLSATLETPTTSLLEKPRGETALHVAA-----ARGNLTLVQ 402 (480)
Q Consensus 329 ~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~-----~~~~~~~~~ 402 (480)
+|..+..+.+++++|+..|+.++|++|++.|+ +++..+ ..|.||||+|+ ..++.++++
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~----------------~~g~tpL~~a~~~~~~~~~~~~~v~ 167 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQN----------------RAGYSPIMLTALATLKTQDDIETVL 167 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCC----------------TTSCCHHHHGGGCCCCSHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCC----------------CCCCCHHHHHHHHHhhhhhhHHHHH
Confidence 67778889999999999999999999999998 777653 35999999999 567899999
Q ss_pred HHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCC
Q psy875 403 SLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS-AGAEVS 480 (480)
Q Consensus 403 ~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~ 480 (480)
.|++.|.+++..+..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++ .|++++
T Consensus 168 ~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n--~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~ 244 (276)
T 4hbd_A 168 QLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN--VQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS 244 (276)
T ss_dssp HHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT
T ss_pred HHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999999999999999 669999999999999999999999999 899875
No 93
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.87 E-value=6.1e-22 Score=164.41 Aligned_cols=124 Identities=33% Similarity=0.424 Sum_probs=113.6
Q ss_pred chHHHHHHhhCcHHHHHHHHhc-CCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q psy875 337 ESITISRNRLGAQEVRKLLSLL-NADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD 415 (480)
Q Consensus 337 ~~~~~~a~~~~~~~~v~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~ 415 (480)
.++++.|+..|+.++++.|++. +.+++.. +..|.||||+ +..|+.+++++|++.|++++.+|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~----------------~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~ 65 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDAL----------------NRFGKTALQV-MMFGSTAIALELLKQGASPNVQD 65 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCC----------------CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCC
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCcccc----------------CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcC
Confidence 5789999999999999999998 3366554 3459999999 99999999999999999999999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 416 SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 416 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++ ++++
T Consensus 66 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~ 127 (156)
T 1bd8_A 66 TSGTSPVHDAARTGFLDTLKVLVEHGADVN--VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH 127 (156)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHcCCCCC--CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC
Confidence 999999999999999999999999999999 5699999999999999999999999998 7764
No 94
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.87 E-value=5.9e-22 Score=176.98 Aligned_cols=132 Identities=23% Similarity=0.173 Sum_probs=89.2
Q ss_pred CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCC-HHHHHHHHhcC
Q psy875 330 NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGN-LTLVQSLLKQG 408 (480)
Q Consensus 330 ~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~-~~~~~~ll~~g 408 (480)
+..+..+.++++.|+..|+.+++++|+++|++++.. +..|.||||+|+..++ .+++++|++.|
T Consensus 103 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~----------------~~~g~t~l~~a~~~~~~~~~~~~L~~~~ 166 (240)
T 3eu9_A 103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM----------------DQNGMTPLMWAAYRTHSVDPTRLLLTFN 166 (240)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------------CTTSCCHHHHHHHHCCSSTTHHHHHHTT
T ss_pred cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcccc----------------CCCCCcHHHHHHHhCChHHHHHHHHhcC
Confidence 334444455555555555555555555555554432 3347777777776554 67777777777
Q ss_pred CCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 409 HPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 409 ~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
++++..+. .|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|++.
T Consensus 167 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD--AQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT--CBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 77777775 77788888888888888888888888877 45777888888888888888888888777653
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.87 E-value=1.2e-20 Score=172.25 Aligned_cols=212 Identities=18% Similarity=0.248 Sum_probs=184.1
Q ss_pred HhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC--CCchHHHHHHH
Q psy875 47 YKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN--KDDKLIRTVMR 120 (480)
Q Consensus 47 ~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~--~~~~~~~~~~~ 120 (480)
....|++++|+.+|++|++++ ..+.+....++..+|.+|... |++++|+.++++++.+.... ++.+....++.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 456799999999999999986 235577889999999996555 99999999999999988665 66778889999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhccc------ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc----CcHHHH
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSD------LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR----NFPEAV 190 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~ 190 (480)
++|.+|...|++++|+.+|++++... ..+....++.++|.+|..+|++++|+.++++++++... +.+...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999998763 23566889999999999999999999999999998443 467788
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC-------------------------------------------Cc
Q psy875 191 KTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK-------------------------------------------DD 227 (480)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------------------------------~~ 227 (480)
.++.++|.++..+|+ +++|+.++++++++..... ..
T Consensus 170 ~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 170 KTKNNLASCYLKQGK-YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp HHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999 9999999999999865421 45
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 228 KLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 228 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
+....++..+|.+|..+|++++|..+++++.++
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778889999999999999999999999998764
No 96
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.87 E-value=3e-21 Score=177.16 Aligned_cols=141 Identities=24% Similarity=0.337 Sum_probs=107.5
Q ss_pred cCCCcCCCC-cCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHH
Q psy875 324 RNDKDSNLN-LYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQ 402 (480)
Q Consensus 324 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~ 402 (480)
..+.+++.. ...+.++++.|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.++++
T Consensus 26 ~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~ 89 (285)
T 1wdy_A 26 EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK----------------KNGATPFLLAAIAGSVKLLK 89 (285)
T ss_dssp HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTCCCHHHHHHHHTCHHHHH
T ss_pred HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC----------------CCCCCHHHHHHHcCCHHHHH
Confidence 334455544 5667788888888888888888888888876543 34788888888888888888
Q ss_pred HHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccC--------CCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875 403 SLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQ--------DSAGWLPLHEAANHGHTDIVQALVS 474 (480)
Q Consensus 403 ~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~--------~~~g~tpl~~A~~~~~~~~~~~Ll~ 474 (480)
+|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.... +..|.||||+|+..|+.+++++|++
T Consensus 90 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 169 (285)
T 1wdy_A 90 LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169 (285)
T ss_dssp HHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888773210 5667888888888888888888887
Q ss_pred c-CCCCC
Q psy875 475 A-GAEVS 480 (480)
Q Consensus 475 ~-ga~~~ 480 (480)
. |++++
T Consensus 170 ~~~~~~~ 176 (285)
T 1wdy_A 170 EMGADVN 176 (285)
T ss_dssp TSCCCTT
T ss_pred hcCCCCC
Confidence 6 77664
No 97
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=1.8e-22 Score=178.20 Aligned_cols=129 Identities=22% Similarity=0.189 Sum_probs=112.2
Q ss_pred cCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCC
Q psy875 333 LYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ-GHPV 411 (480)
Q Consensus 333 ~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-g~~~ 411 (480)
+..+.++|+.|+..|+.++|++|++.|++++..+ ..|.||||+|+..|+.+++++|++. |+++
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~ 133 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD----------------KAGSTALYWACHGGHKDIVEMLFTQPNIEL 133 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHTTSTTCCC
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccC----------------CCCCCHHHHHHHcCCHHHHHHHHcCCCCCc
Confidence 3456789999999999999999999999988653 3499999999999999999999999 9999
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 412 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
+.+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..++.++++.|+..|++.
T Consensus 134 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD--LRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC--CCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--cccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 9999999999999999999999999999999999 66999999999999999999999999999865
No 98
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=6.6e-21 Score=181.46 Aligned_cols=216 Identities=15% Similarity=0.081 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
+....+++.+|.+|...|++++|+.+|++++++ .+....++..+|.+|.. .|++++|+.++++++.+.+......
T Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~ 170 (365)
T 4eqf_A 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLEL----QPNNLKALMALAVSYTN-TSHQQDACEALKNWIKQNPKYKYLV 170 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCHHHHCC-
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHc-cccHHHHHHHHHHHHHhCccchHHH
Confidence 345778999999999999999999999999999 56667889999999555 4999999999999998865443321
Q ss_pred ----HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875 114 ----LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA 189 (480)
Q Consensus 114 ----~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 189 (480)
....++..+|.++...|++++|+.+|++++...+......++.++|.+|...|++++|+.+|++++++. +..
T Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~ 246 (365)
T 4eqf_A 171 KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR----PED 246 (365)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTC
T ss_pred hhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCC
Confidence 124556678999999999999999999999887653356789999999999999999999999999983 444
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLD 265 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~ 265 (480)
..++.++|.++...|+ +++|+.+|++++++ .+....++..+|.+|..+|++++|..+++++.++.....
T Consensus 247 ~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 247 YSLWNRLGATLANGDR-SEEAVEAYTRALEI------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 6789999999999999 99999999999987 333467889999999999999999999999999876543
No 99
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.86 E-value=2.3e-20 Score=171.84 Aligned_cols=223 Identities=15% Similarity=0.065 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN 109 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~ 109 (480)
.+......|...|.+|...|+|++|+++|.+++++. .++....+.++.++|.+| ...|++++|+.+|++|+.+.+..
T Consensus 32 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~-~~~g~~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCF-KSGGNSVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHc
Confidence 467777888999999999999999999999999996 344455688999999995 55599999999999999999988
Q ss_pred CCchHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhcccccc----cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 110 KDDKLIRTVMRSIKKLYKKH-DNLDSACSELHTVLSSDLCK----DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 110 ~~~~~~~~~~~~l~~~y~~~-~~~~~A~~~~~~~l~~~~~~----~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
++....+.++.++|.+|... |++++|+.+|++++...+.. ....++.++|.+|..+|+|++|+.+|++++++...
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 88888889999999999996 99999999999999876542 23578999999999999999999999999998665
Q ss_pred Cc---HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--HcCChHHHHHHHHHH
Q psy875 185 NF---PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYK--KHDKFTELEQIKTEL 257 (480)
Q Consensus 185 ~~---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~ 257 (480)
.. .....++.++|.++..+|+ +++|+.+|++++.+........ ....+..++..+. ..+++++|+..++++
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~-~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQSEDPNFADSR-ESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred CCcccHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCcH-HHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 32 2445688999999999999 9999999999998755443322 2345566677665 456788888777544
No 100
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.86 E-value=1.9e-21 Score=179.89 Aligned_cols=132 Identities=30% Similarity=0.420 Sum_probs=118.1
Q ss_pred cCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy875 333 LYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVK 412 (480)
Q Consensus 333 ~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~ 412 (480)
...+.++++.|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~ 100 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYAN----------------VDGLTALHQACIDDNVDMVKFLVENGANIN 100 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBC----------------TTCCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccC----------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 3456789999999999999999999999988653 359999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcc--------------------------------------------
Q psy875 413 VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKV-------------------------------------------- 448 (480)
Q Consensus 413 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-------------------------------------------- 448 (480)
.+|..|+||||+|+..|+.+++++|+++|++++..-
T Consensus 101 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 180 (299)
T 1s70_B 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRD 180 (299)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHH
Confidence 999999999999999999999999999999987320
Q ss_pred --------------CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 449 --------------QDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 449 --------------~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
.+..|.||||+|+..|+.+++++|+++|++++
T Consensus 181 ~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~ 226 (299)
T 1s70_B 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN 226 (299)
T ss_dssp HHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred HHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence 12357788999999999999999999999875
No 101
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=1.8e-21 Score=192.42 Aligned_cols=132 Identities=20% Similarity=0.111 Sum_probs=118.0
Q ss_pred chHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHH---cCCHHHHHHHHhcCCCCCC
Q psy875 337 ESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAA---RGNLTLVQSLLKQGHPVKV 413 (480)
Q Consensus 337 ~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~---~~~~~~~~~ll~~g~~~~~ 413 (480)
...|+.|+..|+.++|+.|++.|++++.... ....+..|.||||+||. .|+.+++++|+++|+++|.
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~----------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~ 202 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLP----------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA 202 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBC----------CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTC
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCC----------CcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCc
Confidence 3679999999999999999999999886522 11224569999999977 8999999999999999999
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 203 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 203 KAADGNTALHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALDIARKKHHKECEELLEQAQAGTF 267 (497)
T ss_dssp CCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCS--CCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999 669999999999999999999999999999874
No 102
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=5.4e-22 Score=177.47 Aligned_cols=125 Identities=26% Similarity=0.271 Sum_probs=113.3
Q ss_pred CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875 334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV 413 (480)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~ 413 (480)
..+.++++.|+..|+.++|++|++ |++++..+ ..|.||||+|+..|+.+++++|+++|++++.
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d----------------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~ 105 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVD----------------ENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBC----------------TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcC----------------CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCc
Confidence 356789999999999999999999 99988654 3599999999999999999999999999999
Q ss_pred CC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH----------------HcCCHHHHHHHHHcC
Q psy875 414 QD-SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA----------------NHGHTDIVQALVSAG 476 (480)
Q Consensus 414 ~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~----------------~~~~~~~~~~Ll~~g 476 (480)
++ ..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+ ..|+.+++++|++++
T Consensus 106 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp CCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence 98 789999999999999999999999999999 56999999999887 668899999998864
Q ss_pred C
Q psy875 477 A 477 (480)
Q Consensus 477 a 477 (480)
.
T Consensus 184 ~ 184 (244)
T 3ui2_A 184 F 184 (244)
T ss_dssp E
T ss_pred c
Confidence 3
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=3.9e-21 Score=174.88 Aligned_cols=133 Identities=18% Similarity=0.112 Sum_probs=119.5
Q ss_pred CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCC
Q psy875 335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAAR---GNLTLVQSLLKQGHPV 411 (480)
Q Consensus 335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~---~~~~~~~~ll~~g~~~ 411 (480)
.....++.|+..|+.+.++.+++.|++++.... ....+..|.||||+|+.. |+.+++++|+++|+++
T Consensus 129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~----------l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i 198 (278)
T 1dcq_A 129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIP----------LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL 198 (278)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCC----------CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT
T ss_pred hhhhhhhhHhhhcccHHHHHHHHhhcchhhhcc----------ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc
Confidence 345688999999999999999999999765421 122345699999999999 8999999999999999
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875 412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 412 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
|.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 199 n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 199 DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE--IANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999 66999999999999999999999999999864
No 104
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=3.3e-21 Score=164.47 Aligned_cols=123 Identities=27% Similarity=0.292 Sum_probs=109.5
Q ss_pred CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875 334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV 413 (480)
Q Consensus 334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~ 413 (480)
..+.++++.|+..|+.++++.|++ |++++..+ ..|.||||+|+..|+.+++++|+++|++++.
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d----------------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 104 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVD----------------ENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCC----------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcC----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence 355788999999999999999999 99888653 3599999999999999999999999999999
Q ss_pred CC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHc----------------CCHHHHHHHHHc
Q psy875 414 QD-SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANH----------------GHTDIVQALVSA 475 (480)
Q Consensus 414 ~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~----------------~~~~~~~~Ll~~ 475 (480)
++ ..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+.. |+.+++++|.++
T Consensus 105 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp CCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc--CCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence 98 889999999999999999999999999999 6699999999999876 456677776654
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.85 E-value=2.4e-19 Score=166.34 Aligned_cols=207 Identities=9% Similarity=0.089 Sum_probs=175.2
Q ss_pred ccccHHHHHHHHHHHHHHhh-------ccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHH
Q psy875 49 DNKQYNLAVDYFNKELRLHA-------RNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRS 121 (480)
Q Consensus 49 ~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~ 121 (480)
..|++++|.++++++.+... ++.......+...|.+|. ..|++++|+.+|.+|+.+....++....+.++.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~ 81 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFK-NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ 81 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46888999999999888641 122233456666788844 4499999999999999999988888888999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHH
Q psy875 122 IKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGE 195 (480)
Q Consensus 122 l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~ 195 (480)
+|.+|..+|++++|+.+|++++..... ...+.++.++|.+|.. |++++|+.+|++++++.+. +......++.+
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 160 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 999999999999999999999876543 2346789999999999 9999999999999998665 34456789999
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK 258 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 258 (480)
+|.+|..+|+ |++|+.+|++++.+....+........+..++.++..+|++++|..+++++.
T Consensus 161 lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 161 ASRLLVRQQK-FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999 9999999999999998887777777788999999999999999999998876
No 106
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=167.74 Aligned_cols=152 Identities=26% Similarity=0.262 Sum_probs=125.5
Q ss_pred hccCCccchhhhccCCCcC-----------C-CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcc
Q psy875 311 NRKRAPRSHFLIKRNDKDS-----------N-LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTS 378 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~ 378 (480)
+..|.||+|+++..+..++ + .....+.++++.|+..|+.+++++|++.|++++..+
T Consensus 39 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------------ 106 (240)
T 3eu9_A 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLID------------ 106 (240)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCC------------
T ss_pred CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccC------------
Confidence 3457788888776655432 2 233346788888888888888888888888876543
Q ss_pred ccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCC-HHHHHHHHHcCCCCCCccCCC-CCCcH
Q psy875 379 LLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGH-TDIVQALVSAGADPNDKVQDS-AGWLP 456 (480)
Q Consensus 379 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~g~~~~~~~~~~-~g~tp 456 (480)
..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++ .+++++|++.|++++. .+. .|.||
T Consensus 107 ----~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~--~~~~~g~t~ 180 (240)
T 3eu9_A 107 ----GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL--GDKYHKNTA 180 (240)
T ss_dssp ----TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTC--CCTTTCCCH
T ss_pred ----CCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcch--hhccCCCcH
Confidence 348999999999999999999999999999999999999999997666 7899999999999994 465 89999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 457 LHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 457 l~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
||+|+..|+.+++++|+++|++++
T Consensus 181 L~~A~~~~~~~~v~~Ll~~g~~~~ 204 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEAGANVD 204 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC
Confidence 999999999999999999999875
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=6.9e-21 Score=179.09 Aligned_cols=130 Identities=28% Similarity=0.250 Sum_probs=118.1
Q ss_pred CcCCCchHHHHHHhh-CcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q psy875 332 NLYNIESITISRNRL-GAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP 410 (480)
Q Consensus 332 ~~~~~~~~~~~a~~~-~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~ 410 (480)
....+.++|+.|+.. |+.++++.|+++|++++..+. +..|.||||+|+..|+.+++++|+++|++
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~--------------~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad 260 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNG--------------GQDNATPLIQATAANSLLACEFLLQNGAN 260 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCT--------------TTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcccc--------------ccCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 344567899999999 999999999999999987541 13499999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy875 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477 (480)
Q Consensus 411 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga 477 (480)
+|.+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+..|.
T Consensus 261 vn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~--~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLG--ARDSEGRDPLTIAMETANADIVTLLRLAKM 325 (368)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCC--CcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999 669999999999999999999999998764
No 108
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.84 E-value=2.4e-21 Score=164.96 Aligned_cols=124 Identities=15% Similarity=0.072 Sum_probs=108.7
Q ss_pred hHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCH----HHHHHHHhcCCCCCC
Q psy875 338 SITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNL----TLVQSLLKQGHPVKV 413 (480)
Q Consensus 338 ~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~----~~~~~ll~~g~~~~~ 413 (480)
+.++.|++.|+.+.++.++..|.+..... .|.||||+|+..++. +++++|+++|+++|.
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~-----------------~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGYEDKESV-----------------LKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSSSCHHHH-----------------HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred cHHHHHHHcCCHHHHHHHHhcCccccccc-----------------CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 56888999999999999998876543211 299999999999975 599999999999999
Q ss_pred CCCCCChHHHHHHHcCC------HHHHHHHHHcCCCCCCccCCCCCC-cHHHHHHHcC-----CHHHHHHHHH-cCCCCC
Q psy875 414 QDSAGWLPLHEAANHGH------TDIVQALVSAGADPNDKVQDSAGW-LPLHEAANHG-----HTDIVQALVS-AGAEVS 480 (480)
Q Consensus 414 ~~~~g~t~l~~a~~~~~------~~~~~~Ll~~g~~~~~~~~~~~g~-tpl~~A~~~~-----~~~~~~~Ll~-~ga~~~ 480 (480)
+|..|+||||+|+..++ .+++++|+++|+++| .+|..|. ||||+|+..+ +.+++++|++ +|++++
T Consensus 71 ~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin--~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 71 RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT--ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp CCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS--SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred CCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC--ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 99999999999999987 688999999999999 6699999 9999999854 4569999999 999985
No 109
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=1.4e-19 Score=172.31 Aligned_cols=218 Identities=15% Similarity=0.105 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch-
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK- 113 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~- 113 (480)
....+++.+|.++...|++++|+.+|++++++ .+....++..+|.+|.. .|++++|+.++++++...+......
T Consensus 96 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~ 170 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENEQELLAISALRRCLEL----KPDNQTALMALAVSFTN-ESLQRQACEILRDWLRYTPAYAHLVT 170 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSTTTGGGCC
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 34678899999999999999999999999998 55566788889999544 4999999999998887654332211
Q ss_pred ------------------------------------------H--HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc
Q psy875 114 ------------------------------------------L--IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK 149 (480)
Q Consensus 114 ------------------------------------------~--~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~ 149 (480)
. ...++..+|.+|...|++++|+.+|++++...+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-- 248 (368)
T 1fch_A 171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-- 248 (368)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--
T ss_pred HHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--
Confidence 1 356788999999999999999999999997764
Q ss_pred cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCc--
Q psy875 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDD-- 227 (480)
Q Consensus 150 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-- 227 (480)
....++.++|.+|...|++++|+.+|++++++ .+....++..+|.++...|+ +++|+.+|++++.+......+
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALEL----QPGYIRSRYNLGISCINLGA-HREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTC-----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCccc
Confidence 34578999999999999999999999999998 34456789999999999999 999999999999987655322
Q ss_pred ---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q psy875 228 ---KLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKL 264 (480)
Q Consensus 228 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~ 264 (480)
+....++..++.++..+|++++|...++++.+.....
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence 2236789999999999999999999999887665443
No 110
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.84 E-value=7.6e-21 Score=174.98 Aligned_cols=131 Identities=20% Similarity=0.091 Sum_probs=117.8
Q ss_pred CchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCC
Q psy875 336 IESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAAR---GNLTLVQSLLKQGHPVK 412 (480)
Q Consensus 336 ~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~---~~~~~~~~ll~~g~~~~ 412 (480)
..++++.|+..|+.+.|+.|++.|++++..... ...+..|.||||+|+.. ++.+++++|+++|+++|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~----------~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn 220 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPG----------PDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD 220 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEEC----------SSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCC----------cccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC
Confidence 456799999999999999999999998763110 01244599999999997 89999999999999999
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875 413 VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478 (480)
Q Consensus 413 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 478 (480)
.+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|++
T Consensus 221 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 221 AKAADGNTALHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALDIARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS--CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999 6699999999999999999999999998875
No 111
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.84 E-value=2.3e-19 Score=153.14 Aligned_cols=168 Identities=18% Similarity=0.239 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
+.+.+|+++|.+|..+|+|++|+++|++++++ .|....++..+|.+|.. .|++++|+..+.+++...+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~-~~~~~~a~~~~~~~~~~~~~~----- 72 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA----DPNNVETLLKLGKTYMD-IGLPNDAIESLKKFVVLDTTS----- 72 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCC-----
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCchh-----
Confidence 34678999999999999999999999999999 67778889999999555 499999999999999875432
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
..++..+|.++...+++++|...+.+++...+. ...++..+|.+|..+|++++|+++|++++++ .|..+.++.
T Consensus 73 -~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~ 145 (184)
T 3vtx_A 73 -AEAYYILGSANFMIDEKQAAIDALQRAIALNTV--YADAYYKLGLVYDSMGEHDKAIEAYEKTISI----KPGFIRAYQ 145 (184)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHhCCchhHHHHHHHHHHh----cchhhhHHH
Confidence 567789999999999999999999999877654 4578899999999999999999999999998 455578899
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 195 EIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
++|.+|..+|+ +++|+.+|++|+++
T Consensus 146 ~lg~~~~~~g~-~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 146 SIGLAYEGKGL-RDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHhC
Confidence 99999999999 99999999999987
No 112
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.83 E-value=2e-20 Score=151.42 Aligned_cols=98 Identities=45% Similarity=0.706 Sum_probs=93.5
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460 (480)
Q Consensus 381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A 460 (480)
.+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A 83 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN--TTGYQNDSPLHDA 83 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCGGGCCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc--CcCCCCCCHHHHH
Confidence 35569999999999999999999999999999999999999999999999999999999999999 5699999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCC
Q psy875 461 ANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 461 ~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+..|+.+++++|+++|++++
T Consensus 84 ~~~~~~~~v~~Ll~~ga~~~ 103 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGASRN 103 (137)
T ss_dssp HHTTCHHHHHHHHHTTCCTT
T ss_pred HHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999975
No 113
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.83 E-value=6.9e-19 Score=158.12 Aligned_cols=207 Identities=15% Similarity=0.143 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~ 111 (480)
.+...+.+++.+|.++...|++++|+.+|+++++. .+....++..+|.+|... |++++|+.++++++...+.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~--- 103 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSSADAHAALAVVFQTE-MEPKLADEEYRKALASDSR--- 103 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT---
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcC---
Confidence 34455889999999999999999999999999998 555677889999995554 9999999999999987543
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 191 (480)
...++..+|.+|...|++++|+.+|++++.....+....++..+|.+|...|++++|+.+++++++..+ ....
T Consensus 104 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~ 176 (252)
T 2ho1_A 104 ---NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR----NQPS 176 (252)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CCHH
T ss_pred ---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc----ccHH
Confidence 256788999999999999999999999987223456678899999999999999999999999999843 3367
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
++..+|.++...|+ +++|..+++++++. .+....++..++.++...|++++|..+++++.++
T Consensus 177 ~~~~la~~~~~~g~-~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 177 VALEMADLLYKERE-YVPARQYYDLFAQG------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHTT------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 78999999999999 99999999998764 2223456788999999999999999999998764
No 114
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.83 E-value=1.8e-19 Score=163.82 Aligned_cols=210 Identities=13% Similarity=0.105 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
..+++.+|.+|...|++++|+++++++++. ..+......++..+|.+|.. .|++++|+.+++++++..+.. .
T Consensus 37 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~a~~~~~~~------~ 108 (272)
T 3u4t_A 37 PYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMK-KGQDSLAIQQYQAAVDRDTTR------L 108 (272)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTC------T
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcCccc------H
Confidence 458899999999999999999999999985 54444457788999999554 599999999999999975533 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHH-HHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA-QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la-~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 195 (480)
.++..+|.+|..+|++++|+.+|++++... +....++.++| .+|.. +++++|+.+|++++++.+ ....++..
T Consensus 109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p----~~~~~~~~ 181 (272)
T 3u4t_A 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYN-KEYVKADSSFVKVLELKP----NIYIGYLW 181 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST----TCHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCc----cchHHHHH
Confidence 578899999999999999999999999775 44568899999 55554 599999999999999843 33678888
Q ss_pred HHHHHHHhCCc--hHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 196 IGDLYELQEKP--FELVVSTHEKALDLARQNKD--DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 196 l~~~~~~~~~~--~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
+|.++...++. +++|+.++++++++....++ ......++..+|.+|...|++++|..+++++.++.
T Consensus 182 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999988752 56799999999998866555 34566899999999999999999999999998753
No 115
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.83 E-value=3.1e-19 Score=171.37 Aligned_cols=209 Identities=18% Similarity=0.254 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC--
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD-- 111 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~-- 111 (480)
+..+.+++.+|.++...|++++|+.+|++++++ .|....++..+|.+|. ..|++++|+..|++++...+....
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~ 138 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL----KPDFIDGYINLAAALV-AAGDMEGAVQAYVSALQYNPDLYCVR 138 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH-HHSCSSHHHHHHHHHHHHCTTCTHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 344566777777777777777777777777766 4444555566666633 336666666666666654322100
Q ss_pred --------------------------chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh
Q psy875 112 --------------------------DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN 165 (480)
Q Consensus 112 --------------------------~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~ 165 (480)
.+....++.++|.+|...|++++|+.+|++++...+ ....++.++|.++...
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~ 216 (388)
T 1w3b_A 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--NFLDAYINLGNVLKEA 216 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHc
Confidence 011123444555555555555555555555544332 2334455555555555
Q ss_pred ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Q psy875 166 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD 245 (480)
Q Consensus 166 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (480)
|++++|+..|++++++ .|....++.++|.++...|+ +++|+..|++++++ .+....++..++.++...|
T Consensus 217 ~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 217 RIFDRAVAAYLRALSL----SPNHAVVHGNLACVYYEQGL-IDLAIDTYRRAIEL------QPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp TCTTHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT------CSSCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhh----CcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcC
Confidence 5555555555555555 23334566677777777777 77777777776654 2223345667777777777
Q ss_pred ChHHHHHHHHHHHHH
Q psy875 246 KFTELEQIKTELKSL 260 (480)
Q Consensus 246 ~~~~A~~~~~~~~~l 260 (480)
++++|..+++++.++
T Consensus 286 ~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 286 SVAEAEDCYNTALRL 300 (388)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 777777777777653
No 116
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.83 E-value=6.5e-21 Score=149.25 Aligned_cols=99 Identities=39% Similarity=0.591 Sum_probs=94.4
Q ss_pred cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875 380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHE 459 (480)
Q Consensus 380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~ 459 (480)
+.|.+|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++.+++++|+++|++++ ..|..|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN--ARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT--CCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc--ccCCCCCCHHHH
Confidence 456779999999999999999999999999999999999999999999999999999999999999 569999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCC
Q psy875 460 AANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 460 A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
|+..|+.+++++|+++|+++|
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n 102 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVN 102 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHH
T ss_pred HHHCCCHHHHHHHHHcCCCCC
Confidence 999999999999999999874
No 117
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.83 E-value=4.2e-20 Score=146.47 Aligned_cols=95 Identities=32% Similarity=0.434 Sum_probs=91.3
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHc
Q psy875 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANH 463 (480)
Q Consensus 384 ~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~ 463 (480)
.|.||||+|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN--APDKHHITPLLSAVYE 83 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT--CCCTTSCCHHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCCHHHHHHHc
Confidence 48999999999999999999999999999999999999999999999999999999999999 5699999999999999
Q ss_pred CCHHHHHHHHHcCCCCC
Q psy875 464 GHTDIVQALVSAGAEVS 480 (480)
Q Consensus 464 ~~~~~~~~Ll~~ga~~~ 480 (480)
|+.+++++|+++|++++
T Consensus 84 ~~~~~v~~Ll~~ga~~~ 100 (123)
T 3aaa_C 84 GHVSCVKLLLSKGADKT 100 (123)
T ss_dssp TCHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHcCCCCC
Confidence 99999999999999875
No 118
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.83 E-value=2.5e-19 Score=172.06 Aligned_cols=197 Identities=19% Similarity=0.269 Sum_probs=99.0
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV 118 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~ 118 (480)
++..+|.++...|++++|+.+|++++++ .+....++..+|.+ +...|++++|+..+++++.+.+. ...+
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~------~~~~ 239 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNV-LKEARIFDRAVAAYLRALSLSPN------HAVV 239 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHTTTCTTHHHHHHHHHHHHCTT------CHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCcC------CHHH
Confidence 3444444444444444444444444444 23333344444444 22224444444444444443221 1234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875 119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD 198 (480)
Q Consensus 119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~ 198 (480)
+.++|.+|...|++++|+.+|++++...+ ....++.++|.+|...|++++|+.+|+++++.. |....++..+|.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~ 313 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQP--HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC----PTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCS--SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cccHHHHHHHHH
Confidence 45555555555555555555555554432 223445555555555555555555555555552 222344555555
Q ss_pred HHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 199 LYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
++...|+ +++|+..++++++. .+....++..++.++.++|++++|...++++.+
T Consensus 314 ~~~~~g~-~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 314 IKREQGN-IEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHTTTC-HHHHHHHHHHHTTS------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHcCC-HHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555 56665555555543 222344555666666666666666666666554
No 119
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=2.3e-18 Score=159.52 Aligned_cols=188 Identities=21% Similarity=0.324 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ 108 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~ 108 (480)
....+.++..+|.+|...|++++|+.++++++++. ..+.+....++..+|.+| ...|++++|+.++++++.+...
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY-GKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-HHcCcHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999985 155677888999999995 5559999999999999998766
Q ss_pred C--CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc------cccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875 109 N--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS------DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR 180 (480)
Q Consensus 109 ~--~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~ 180 (480)
. ++.+....++.++|.+|...|++++|+.+|++++.. ...+....++..+|.+|..+|++++|+.+++++++
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 566778889999999999999999999999999876 22355678899999999999999999999999998
Q ss_pred hhhc---------------------------------------------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy875 181 LHAR---------------------------------------------NFPEAVKTLGEIGDLYELQEKPFELVVSTHE 215 (480)
Q Consensus 181 ~~~~---------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 215 (480)
+... ..+..+.++..+|.+|..+|+ +++|+.+|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~ 302 (311)
T 3nf1_A 224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK-FEAAETLEE 302 (311)
T ss_dssp HHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC-HHHHHHHHH
T ss_pred HHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 6432 357788899999999999999 999999999
Q ss_pred HHHHHHH
Q psy875 216 KALDLAR 222 (480)
Q Consensus 216 ~al~~~~ 222 (480)
+++++.+
T Consensus 303 ~al~l~~ 309 (311)
T 3nf1_A 303 AAMRSRK 309 (311)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9998753
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.82 E-value=1.5e-18 Score=160.99 Aligned_cols=216 Identities=14% Similarity=0.087 Sum_probs=179.0
Q ss_pred hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ 108 (480)
Q Consensus 31 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~ 108 (480)
..+......|...|.+|...|++++|+.+|.+++++. .++....+.++.++|.+| ...|++++|+.+|++|+.+...
T Consensus 30 ~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~-~~~g~~~~A~~~~~~Al~l~~~ 108 (307)
T 2ifu_A 30 PDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMML-KDLQRMPEAVQYIEKASVMYVE 108 (307)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCGGGGHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHH
Confidence 4466777888899999999999999999999999996 344456678999999995 5559999999999999999998
Q ss_pred CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc----cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 109 NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK----DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 109 ~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
.++....+.++.++|.+|.. |++++|+.+|++++...+.. ..+.++.++|.+|..+|+|++|+.+|++++++...
T Consensus 109 ~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 109 NGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999 99999999999999776542 34678999999999999999999999999998665
Q ss_pred C--cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q psy875 185 N--FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQ 252 (480)
Q Consensus 185 ~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 252 (480)
. .+....++.++|.++..+|+ +++|+.+|++++ +....... .....+..++..+ ..|+.+.+..
T Consensus 188 ~~~~~~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al-~~p~~~~~-~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 188 MENYPTCYKKCIAQVLVQLHRAD-YVAAQKCVRESY-SIPGFSGS-EDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHT-TSTTSTTS-HHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred cCChhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHh-CCCCCCCC-HHHHHHHHHHHHH-HhcCHHHHHH
Confidence 3 34456688999999999999 999999999999 64433332 3445566677666 5677655544
No 121
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.82 E-value=3.8e-18 Score=150.10 Aligned_cols=205 Identities=13% Similarity=0.108 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
....+++.+|.++...|++++|+++++++++. .+....++..+|.+|.. .|++++|+.++++++...+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~----- 75 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKS----DPKNELAWLVRAEIYQY-LKVNDKAQESFRQALSIKPDS----- 75 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC-----
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----CccchHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCC-----
Confidence 45678999999999999999999999999998 55557788899999554 599999999999999875432
Q ss_pred HHHHHHHHHHHHHhc-CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875 115 IRTVMRSIKKLYKKH-DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL 193 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 193 (480)
..++..+|.+|... |++++|+.++++++.....+....++..+|.+|...|++++|+.+++++++.. +....++
T Consensus 76 -~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~ 150 (225)
T 2vq2_A 76 -AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ----PQFPPAF 150 (225)
T ss_dssp -HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHH
T ss_pred -hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCchHH
Confidence 45788999999999 99999999999999832345667889999999999999999999999999983 3346788
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 194 GEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
..+|.++...|+ +++|..++++++.... . .....+..++.++...|++++|..+++.+.+.
T Consensus 151 ~~la~~~~~~~~-~~~A~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 151 KELARTKMLAGQ-LGDADYYFKKYQSRVE--V---LQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHTC-HHHHHHHHHHHHHHHC--S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHhCC--C---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999 9999999999988632 0 22344678889999999999999999887653
No 122
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.82 E-value=6.8e-21 Score=157.95 Aligned_cols=130 Identities=22% Similarity=0.174 Sum_probs=100.0
Q ss_pred ccCCccchhhhcc-----------CCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcccc
Q psy875 312 RKRAPRSHFLIKR-----------NDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLL 380 (480)
Q Consensus 312 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 380 (480)
..|.||||+++.. .+.+++..+..+.+++++|+ .|+.+++++|+++|++++..+.
T Consensus 10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~------------- 75 (156)
T 1bi7_B 10 EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP------------- 75 (156)
T ss_dssp CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT-------------
T ss_pred ccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCC-------------
Confidence 3467777766544 45567777888899999985 9999999999999999987643
Q ss_pred CCCCCch-HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875 381 EKPRGET-ALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHE 459 (480)
Q Consensus 381 ~~~~g~~-~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~ 459 (480)
.|.| |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ ..+..|.||.+.
T Consensus 76 ---~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~~~~ 150 (156)
T 1bi7_B 76 ---ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR--GSNHARIDAAEG 150 (156)
T ss_dssp ---TTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred ---CCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC--ccCcCcCccccc
Confidence 4888 9999999999999999999999999999999999999999999999999999999999 568999999874
Q ss_pred H
Q psy875 460 A 460 (480)
Q Consensus 460 A 460 (480)
+
T Consensus 151 ~ 151 (156)
T 1bi7_B 151 P 151 (156)
T ss_dssp -
T ss_pred C
Confidence 3
No 123
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=4.2e-19 Score=158.44 Aligned_cols=204 Identities=12% Similarity=0.090 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
....+..++.+|..+...|++++|+.+|+++++. .+....++..+|.+|.. .|++++|+.++++++...+.
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~---- 89 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE----NKEDAIPYINFANLLSS-VNELERALAFYDKALELDSS---- 89 (243)
T ss_dssp -----------------------CCTTHHHHHTT----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTT----
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCc----
Confidence 3446778999999999999999999999999987 55567788999999555 49999999999999987542
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT 192 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 192 (480)
...++..+|.+|...|++++|+.+|++++...+. ...++..+|.+|...|++++|+.+++++++..+ ....+
T Consensus 90 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~ 161 (243)
T 2q7f_A 90 --AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME--NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE----NDTEA 161 (243)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC--SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT----TCHHH
T ss_pred --chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----ccHHH
Confidence 2567889999999999999999999999977654 356789999999999999999999999999843 34568
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
+..+|.++...|+ +++|+.++++++... +....++..++.+|..+|++++|..+++++.++
T Consensus 162 ~~~l~~~~~~~~~-~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 162 RFQFGMCLANEGM-LDEALSQFAAVTEQD------PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHTC-CHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8999999999999 999999999998762 233567889999999999999999999999875
No 124
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.82 E-value=3.5e-20 Score=149.78 Aligned_cols=98 Identities=31% Similarity=0.455 Sum_probs=93.0
Q ss_pred cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCC-CCcHHH
Q psy875 380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSA-GWLPLH 458 (480)
Q Consensus 380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~-g~tpl~ 458 (480)
..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++ .+|.. |.||||
T Consensus 7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~--~~~~~~g~t~L~ 83 (136)
T 1d9s_A 7 MLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN--CADPATLTRPVH 83 (136)
T ss_dssp CCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS--CCBTTTTBCHHH
T ss_pred CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC--CcCCCCCCCHHH
Confidence 445679999999999999999999999999999999999999999999 99999999999999999 56888 999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCC
Q psy875 459 EAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 459 ~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+|+..|+.+++++|+++|++++
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~~ 105 (136)
T 1d9s_A 84 DAAREGFLDTLVVLHRAGARLD 105 (136)
T ss_dssp HHHHHTCHHHHHHHHHTCCCCC
T ss_pred HHHHcCCHHHHHHHHHcCCCCC
Confidence 9999999999999999999975
No 125
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=163.11 Aligned_cols=114 Identities=31% Similarity=0.334 Sum_probs=96.8
Q ss_pred HHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCH
Q psy875 352 RKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHT 431 (480)
Q Consensus 352 v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~ 431 (480)
|+.|++.|++++.... .+.+|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus 1 v~~ll~~~~~~~~~~~-------------~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~ 67 (229)
T 2vge_A 1 MRSVLRKAGSPRKARR-------------ARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANY 67 (229)
T ss_dssp ---------CCCCCCC-------------TTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CeehhccCCCCccccc-------------cccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 4678888888875432 234588999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 432 DIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 432 ~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 480 (480)
+++++|+++|++++ .+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 68 ~~v~~Ll~~ga~~n--~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~ 114 (229)
T 2vge_A 68 SIVDFLITAGANVN--SPDSHGWTPLHCAASCNDTVICMALVQHGAAIF 114 (229)
T ss_dssp HHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred HHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence 99999999999999 569999999999999999999999999999975
No 126
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.81 E-value=5.1e-19 Score=180.91 Aligned_cols=172 Identities=14% Similarity=0.208 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
+..+.++++||.+|..+|++++|+++|++|+++ .+....++.++|.+|. ..|++++|+.+|++|+++.+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~----- 75 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPT----- 75 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-----
Confidence 456889999999999999999999999999999 7777889999999954 459999999999999998543
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL 193 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 193 (480)
...++.++|.+|..+|++++|+++|+++++..+ ..+.++.++|.+|..+|++++|+.+|++++++ .+....++
T Consensus 76 -~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P--~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l----~P~~~~a~ 148 (723)
T 4gyw_A 76 -FADAYSNMGNTLKEMQDVQGALQCYTRAIQINP--AFADAHSNLASIHKDSGNIPEAIASYRTALKL----KPDFPDAY 148 (723)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHH
Confidence 367899999999999999999999999997764 55688999999999999999999999999999 45557889
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875 194 GEIGDLYELQEKPFELVVSTHEKALDLARQ 223 (480)
Q Consensus 194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 223 (480)
.++|.++..+|+ +++|.+.+++++++...
T Consensus 149 ~~L~~~l~~~g~-~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 149 CNLAHCLQIVCD-WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHTTC-CTTHHHHHHHHHHHHHH
T ss_pred hhhhhHHHhccc-HHHHHHHHHHHHHhChh
Confidence 999999999999 99999999999987653
No 127
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.81 E-value=8.3e-19 Score=166.55 Aligned_cols=202 Identities=8% Similarity=0.024 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhhhcCC
Q psy875 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS-FEIVQSTHEKALDLARQNK 110 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~-~~~A~~~~~kAl~~~~~~~ 110 (480)
..+....++..+|.++...|++++|+..|++++++ .+....+|+++|.+|.. +|+ +++|+.+|++|+.+.+..
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l----~P~~~~a~~~~g~~l~~-~g~d~~eAl~~~~~al~l~P~~- 165 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL----NAANYTVWHFRRVLLKS-LQKDLHEEMNYITAIIEEQPKN- 165 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCTTC-
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CccCHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHCCCC-
Confidence 34566889999999999999999999999999999 78888899999999544 486 999999999999986543
Q ss_pred CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHH
Q psy875 111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAV 190 (480)
Q Consensus 111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 190 (480)
..++.++|.++..+|++++|+.+|++++...+ ....++.++|.++..+|++++|+.+|++++++ .+...
T Consensus 166 -----~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP--~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l----~P~~~ 234 (382)
T 2h6f_A 166 -----YQVWHHRRVLVEWLRDPSQELEFIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE----DVRNN 234 (382)
T ss_dssp -----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH----CTTCH
T ss_pred -----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCH
Confidence 67899999999999999999999999997765 44588999999999999999999999999999 55667
Q ss_pred HHHHHHHHHHHHhCCchHHH-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC--ChHHHHHHHHH
Q psy875 191 KTLGEIGDLYELQEKPFELV-----VSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD--KFTELEQIKTE 256 (480)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~ 256 (480)
.+|+++|.++..++..+++| +.+|++++.+ .+....++..++.++...| ++++|+..+.+
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l------~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL------VPHNESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH------STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 89999999999944415888 5889999887 4445678889999999988 68888877654
No 128
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.7e-18 Score=164.78 Aligned_cols=204 Identities=9% Similarity=0.100 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
+..++.+|..+...|++++|+.+|+++++. .+....++..+|.+|... |++++|+.+|++++.+.+.. .
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~ 133 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAWQFLGITQAEN-ENEQAAIVALQRCLELQPNN------L 133 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------H
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCC------H
Confidence 445899999999999999999999999999 566678899999995555 99999999999999885432 5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccccccc--------HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD--------LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE 188 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~--------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 188 (480)
.++..+|.+|..+|++++|+.+|++++...+... ....+..+|.+|...|++++|+.+|++++++.+...
T Consensus 134 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-- 211 (365)
T 4eqf_A 134 KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI-- 211 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC--
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc--
Confidence 6789999999999999999999999997765421 234456679999999999999999999999844310
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 189 AVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
.+.++..+|.++...|+ +++|+.+|++++++ .+....++..+|.+|..+|++++|..+++++.++
T Consensus 212 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGE-FNRAIDAFNAALTV------RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp CHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 35688999999999999 99999999999987 2334568899999999999999999999999875
No 129
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=4.7e-18 Score=161.67 Aligned_cols=205 Identities=15% Similarity=0.120 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
+..++.+|.++...|++++|+.+|+++++. .+....++..+|.+|... |++++|+.++++++.+.+. ..
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~------~~ 132 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAEN-EQELLAISALRRCLELKPD------NQ 132 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT------CH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHHhcCCC------CH
Confidence 456789999999999999999999999998 566677889999995554 9999999999999988543 25
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccccc-----------------------------------------------c
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-----------------------------------------------K 149 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-----------------------------------------------~ 149 (480)
.++..+|.+|...|++++|+.+|++++...+. +
T Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 212 (368)
T 1fch_A 133 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP 212 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCc
Confidence 67889999999999999999999987755432 1
Q ss_pred c--HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCc
Q psy875 150 D--LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDD 227 (480)
Q Consensus 150 ~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 227 (480)
. ...++..+|.+|...|++++|+.+|++++++ .+....++..+|.++...|+ +++|+.+|++++.+ .
T Consensus 213 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~------~ 281 (368)
T 1fch_A 213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQ-SEEAVAAYRRALEL------Q 281 (368)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------C
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh------C
Confidence 1 4577889999999999999999999999998 34446789999999999999 99999999999887 3
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875 228 KLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 228 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
+....++..+|.+|..+|++++|..+++++.++...
T Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 344578889999999999999999999999887654
No 130
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.81 E-value=2.2e-18 Score=158.66 Aligned_cols=213 Identities=12% Similarity=0.057 Sum_probs=161.2
Q ss_pred HHhhccchhhhhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHH
Q psy875 6 ALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGD 83 (480)
Q Consensus 6 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~ 83 (480)
|...|.. ..++......+.+....+.....+.++.++|.+|...|++++|+.+|++|+++. .++....+.++.++|.
T Consensus 47 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 47 YRLRKEL-NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHTTCT-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333 333333333445545555566778999999999999999999999999999996 3344456788999999
Q ss_pred HHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc-----HHHHHHHH
Q psy875 84 LYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-----LASCYISL 158 (480)
Q Consensus 84 ~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~~~l 158 (480)
+|...+|++++|+.+|++|+.+.+..++......++.++|.+|..+|+|++|+.+|++++...+... ...++.++
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 9444249999999999999999987777667778899999999999999999999999998766532 24478999
Q ss_pred HHHHHhhccHHHHHHHHHHHHhhhhcCc-HHHHHHHHHHHHHHH--HhCCchHHHHHHHHHHHHH
Q psy875 159 AQTYKDNKQYNLAVDYFNKELRLHARNF-PEAVKTLGEIGDLYE--LQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 159 a~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~l~~~~~--~~~~~~~~A~~~~~~al~~ 220 (480)
|.+|..+|++++|+.+|++++++.+... ......+..++..+. ..++ +++|+..|++++.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~-~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ-LSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT-HHHHHHHHTTSSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH-HHHHHHHhccCCcc
Confidence 9999999999999999999999855421 222345666777665 3566 88888887776543
No 131
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=1.7e-19 Score=135.17 Aligned_cols=92 Identities=39% Similarity=0.486 Sum_probs=85.7
Q ss_pred CchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q psy875 336 IESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD 415 (480)
Q Consensus 336 ~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~ 415 (480)
+.++++.|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.+|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d----------------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d 65 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD----------------KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccC----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 5688999999999999999999999998754 349999999999999999999999999999999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCC
Q psy875 416 SAGWLPLHEAANHGHTDIVQALVSAGAD 443 (480)
Q Consensus 416 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~ 443 (480)
..|+||||+|+..|+.+++++|+++|++
T Consensus 66 ~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 66 KNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999975
No 132
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.81 E-value=1.3e-19 Score=146.38 Aligned_cols=96 Identities=39% Similarity=0.539 Sum_probs=92.0
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHH
Q psy875 383 PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAAN 462 (480)
Q Consensus 383 ~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~ 462 (480)
+.+.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+.
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN--AVDAIGFTPLHLAAF 89 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCCHHHHHHH
Confidence 348999999999999999999999999999999999999999999999999999999999999 569999999999999
Q ss_pred cCCHHHHHHHHHcCCCCC
Q psy875 463 HGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 463 ~~~~~~~~~Ll~~ga~~~ 480 (480)
.|+.+++++|+++|++++
T Consensus 90 ~~~~~~v~~Ll~~g~~~~ 107 (136)
T 2jab_A 90 IGHLEIAEVLLKHGADVN 107 (136)
T ss_dssp HTCHHHHHHHHHTTCCTT
T ss_pred cCCHHHHHHHHHcCCCCc
Confidence 999999999999999874
No 133
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.81 E-value=5.2e-18 Score=154.66 Aligned_cols=186 Identities=20% Similarity=0.280 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ 108 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~ 108 (480)
.+..+.++..+|.+|...|++++|+.++++++++. ..+.+....++..+|.+|. ..|++++|+.++++++.+...
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999985 1556788899999999954 559999999999999998765
Q ss_pred C--CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc------cccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875 109 N--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS------DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR 180 (480)
Q Consensus 109 ~--~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~ 180 (480)
. ++.+....++.++|.+|..+|++++|+.+|++++.. ...+....++.++|.+|..+|++++|+.+++++++
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 334777889999999999999999999999999876 22355678999999999999999999999999998
Q ss_pred hhhc---------------------------------------------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy875 181 LHAR---------------------------------------------NFPEAVKTLGEIGDLYELQEKPFELVVSTHE 215 (480)
Q Consensus 181 ~~~~---------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 215 (480)
+... ..+....++..+|.+|..+|+ +++|..+++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~ 276 (283)
T 3edt_B 198 RAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK-LEAAHTLED 276 (283)
T ss_dssp HHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 7332 347778899999999999999 999999999
Q ss_pred HHHHH
Q psy875 216 KALDL 220 (480)
Q Consensus 216 ~al~~ 220 (480)
+++++
T Consensus 277 ~al~~ 281 (283)
T 3edt_B 277 CASRN 281 (283)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 99864
No 134
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=1e-18 Score=163.46 Aligned_cols=203 Identities=14% Similarity=0.067 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 37 ASCYISLAQTYKDNK-QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
..+++.+|.++...| ++++|+.+|+++++. .+....++..+|.+|.. .|++++|+.++++++...+..
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~------ 158 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTL----EKTYGPAWIAYGHSFAV-ESEHDQAMAAYFTAAQLMKGC------ 158 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTT----CTTCTHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTC------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcccc------
Confidence 457788888888888 888888888888877 44455667788888444 488888888888888775432
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC-----cHHHH
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN-----FPEAV 190 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~-----~~~~~ 190 (480)
..++..+|.+|...|++++|+.+|++++...+. ...++..+|.+|...|++++|+.+++++++..+.. .+...
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE--DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 234566888888888888888888888876643 34678888888888888888888888888875431 13445
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 191 KTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
.++..+|.++...|+ +++|+.++++++++. +....++..+|.++..+|++++|..+++++.+
T Consensus 237 ~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 237 PLLNNLGHVCRKLKK-YAEALDYHRQALVLI------PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHHHHhhC------ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 678888888888888 888888888888762 22355677888888888888888888876654
No 135
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.8e-18 Score=161.79 Aligned_cols=206 Identities=16% Similarity=0.151 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK-SFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
..++..++.++...|++++|+.+++++++. .+....++..+|.+|... | ++++|+.++++++...+..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~a~~~~~~~------ 124 (330)
T 3hym_B 56 ASCLPVHIGTLVELNKANELFYLSHKLVDL----YPSNPVSWFAVGCYYLMV-GHKNEHARRYLSKATTLEKTY------ 124 (330)
T ss_dssp TTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTSTHHHHHHHHHHHHS-CSCHHHHHHHHHHHHTTCTTC------
T ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHhCCcc------
Confidence 456777889999999999999999999998 555667888999995555 8 9999999999999875432
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 195 (480)
..++..+|.+|...|++++|+.+|++++...+... .++..+|.+|...|++++|+.+++++++.. +....++..
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~ 198 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH--LPMLYIGLEYGLTNNSKLAERFFSQALSIA----PEDPFVMHE 198 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC----CCChHHHHH
Confidence 45688999999999999999999999998776543 567779999999999999999999999984 344678999
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKALDLARQNKDD---KLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
+|.++...|+ +++|+.++++++...+..++. +....++..+|.++..+|++++|..+++++.++
T Consensus 199 l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 199 VGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999999999 999999999999987665443 334578889999999999999999999999875
No 136
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.8e-18 Score=154.38 Aligned_cols=197 Identities=14% Similarity=0.112 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc---cCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC--
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK-- 110 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~-- 110 (480)
...+++.+|.++...|++++|++++.+++++... +.+....++..+|.+|. ..|++++|+.++++++.+.+...
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~ 115 (258)
T 3uq3_A 37 DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTADIL 115 (258)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCchhHHH
Confidence 3678999999999999999999999999998411 22223788999999954 55999999999999998543211
Q ss_pred ------------------CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHH
Q psy875 111 ------------------DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAV 172 (480)
Q Consensus 111 ------------------~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~ 172 (480)
..+....++..+|.++...|++++|+.+|++++...+. ...++..+|.+|...|++++|+
T Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~ 193 (258)
T 3uq3_A 116 TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFPEAI 193 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhCCHHHHH
Confidence 24556778999999999999999999999999977654 4578999999999999999999
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy875 173 DYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKL 240 (480)
Q Consensus 173 ~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 240 (480)
.+++++++.. +....++..+|.++...|+ +++|..++++++++....+..+....+...++.+
T Consensus 194 ~~~~~al~~~----~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 194 ADCNKAIEKD----PNFVRAYIRKATAQIAVKE-YASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHhC----HHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999983 4446789999999999999 9999999999999987666555555565555543
No 137
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=6.5e-19 Score=154.63 Aligned_cols=195 Identities=15% Similarity=0.045 Sum_probs=147.5
Q ss_pred hHHHhhccchhhhhhhHHHHh-hhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHH
Q psy875 4 KIALSRGIGLSDSLDSACTEL-HTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG 82 (480)
Q Consensus 4 ~~~~~~g~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg 82 (480)
..++.+|.. +...++....+ .+.+.....+....+++.+|.++...|++++|+.+|++++++ .|....++..+|
T Consensus 6 ~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg 80 (217)
T 2pl2_A 6 QNPLRLGVQ-LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR----TPRYLGGYMVLS 80 (217)
T ss_dssp HHHHHHHHH-HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred HHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHH
Confidence 456777777 44444422221 122222333455778999999999999999999999999999 677778899999
Q ss_pred HHHHHhh-----------ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH
Q psy875 83 DLYELQE-----------KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151 (480)
Q Consensus 83 ~~y~~~~-----------~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~ 151 (480)
.+ +... |++++|+..+++++++.+. ...++.++|.+|..+|++++|+..|++++... ..
T Consensus 81 ~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~ 150 (217)
T 2pl2_A 81 EA-YVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------YAPLHLQRGLVYALLGERDKAEASLKQALALE---DT 150 (217)
T ss_dssp HH-HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CC
T ss_pred HH-HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cc
Confidence 99 6777 9999999999999998543 25678899999999999999999999999877 34
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKAL 218 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al 218 (480)
..++.++|.+|..+|++++|+.+|++++++ .|....++.++|.++...|+ +++|+..|+++-
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQ----APKDLDLRVRYASALLLKGK-AEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHTC----------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHccC-HHHHHHHHHHHh
Confidence 578899999999999999999999999998 45556789999999999999 999999998763
No 138
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.80 E-value=3.7e-18 Score=145.54 Aligned_cols=169 Identities=16% Similarity=0.156 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHH
Q psy875 74 AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLAS 153 (480)
Q Consensus 74 ~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~ 153 (480)
.+.+|+++|.+|... |+|++|+.+|++|+++.+.. ..++..+|.+|..+|++++|+..+.+++...+. ...
T Consensus 4 ~~~iy~~lG~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--~~~ 74 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTK-GDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--SAE 74 (184)
T ss_dssp CHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--hHH
Confidence 456889999996555 99999999999999985432 568899999999999999999999999866644 457
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy875 154 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTV 233 (480)
Q Consensus 154 ~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 233 (480)
++..+|.++...+++++|...+.+++++ .+....++..+|.++..+|+ +++|+..|++++++ .|....+
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~----~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~l~~------~p~~~~~ 143 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIAL----NTVYADAYYKLGLVYDSMGE-HDKAIEAYEKTISI------KPGFIRA 143 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHhCC-chhHHHHHHHHHHh------cchhhhH
Confidence 8889999999999999999999999998 44456788999999999999 99999999999987 4445678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875 234 MRSMKKLYKKHDKFTELEQIKTELKSLEE 262 (480)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~~~~l~~ 262 (480)
+..+|.+|..+|++++|..+++++.++..
T Consensus 144 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 144 YQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999987643
No 139
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.80 E-value=2.9e-20 Score=173.90 Aligned_cols=135 Identities=22% Similarity=0.174 Sum_probs=115.2
Q ss_pred ccCCccchhhhcc-----------CCCcCCCCcCCCchHHHHHHhhCc---HHHHHHHHhcC-CchhhhhhhhccccCCC
Q psy875 312 RKRAPRSHFLIKR-----------NDKDSNLNLYNIESITISRNRLGA---QEVRKLLSLLN-ADLLVHLNLSATLETPT 376 (480)
Q Consensus 312 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~a~~~~~---~~~v~~L~~~g-~~~~~~~~~~~~~~~~~ 376 (480)
..|.||||+|+.. .+.+++..+..+.+||++|+..|+ .++++.|++.+ ++++..
T Consensus 129 ~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~----------- 197 (327)
T 1sw6_A 129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE----------- 197 (327)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE-----------
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCC-----------
Confidence 3588888888665 456778888899999999999999 78888888887 566654
Q ss_pred ccccCCCCCchHHHHHHH----cCCHHHHHHHHhcCC-------------------------------------------
Q psy875 377 TSLLEKPRGETALHVAAA----RGNLTLVQSLLKQGH------------------------------------------- 409 (480)
Q Consensus 377 ~~~~~~~~g~~~l~~a~~----~~~~~~~~~ll~~g~------------------------------------------- 409 (480)
+..|.||||+|+. .|+.+++++|++.+.
T Consensus 198 -----d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll 272 (327)
T 1sw6_A 198 -----DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 272 (327)
T ss_dssp -----CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH
T ss_pred -----CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHH
Confidence 3459999999999 899999999998743
Q ss_pred --CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC
Q psy875 410 --PVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG 464 (480)
Q Consensus 410 --~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~ 464 (480)
++|.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|
T Consensus 273 ~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~--~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF--IANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT--CCCTTSCCGGGGTCC--
T ss_pred HhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHhcC
Confidence 578888999999999999999999999999999999 66999999999998654
No 140
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.80 E-value=3.1e-18 Score=151.52 Aligned_cols=195 Identities=14% Similarity=0.121 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCc-hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP-EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
.+++.+|.++...|+|++|+.+|++++++ .+ ....++..+|.+|... |++++|+.++++++...+ ...
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p------~~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL----TNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIKKNY------NLA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTC------SHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc----cCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhCc------chH
Confidence 68899999999999999999999999998 32 3345677799995554 999999999999997743 246
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccccccc-----HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHH--H
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-----LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE--A 189 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~ 189 (480)
.++..+|.+|..+|++++|+.+|++++...+... .+.++.++|.++..+|++++|+.+|++++++ .|. .
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~ 152 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----TSKKWK 152 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----SCHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----CCCccc
Confidence 7899999999999999999999999998877643 3478999999999999999999999999998 556 6
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
..++.++|.+|..+|+ . .++++..+.. .. .....+......+.+++|..+++++.++.
T Consensus 153 ~~~~~~l~~~~~~~~~-~-----~~~~a~~~~~---~~-----~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 153 TDALYSLGVLFYNNGA-D-----VLRKATPLAS---SN-----KEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHHHHH-H-----HHHHHGGGTT---TC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH-H-----HHHHHHhccc---CC-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8899999999988777 4 2333322210 00 01112333445566777777777776664
No 141
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.80 E-value=9.2e-19 Score=172.30 Aligned_cols=200 Identities=13% Similarity=0.182 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHhccccH-HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 36 LASCYISLAQTYKDNKQY-NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
.+.+++.+|.++...|+| ++|+++|++++++ .+....++..+|.+|... |++++|+.+|++|+++.+ +
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~p---~--- 169 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL----EPELVEAWNQLGEVYWKK-GDVTSAHTCFSGALTHCK---N--- 169 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTCC---C---
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC---C---
Confidence 467899999999999999 9999999999999 667778999999995555 999999999999998743 2
Q ss_pred HHHHHHHHHHHHHhc---------CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh--------ccHHHHHHHHHH
Q psy875 115 IRTVMRSIKKLYKKH---------DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN--------KQYNLAVDYFNK 177 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~---------~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~--------~~~~~A~~~~~~ 177 (480)
..++.++|.+|..+ |++++|+.+|++++...+. ...++.++|.+|..+ |++++|+.+|++
T Consensus 170 -~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~ 246 (474)
T 4abn_A 170 -KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL--DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ 246 (474)
T ss_dssp -HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 37889999999999 9999999999999987654 457899999999999 999999999999
Q ss_pred HHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 178 ELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 178 al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
++++.+. .+..+.++.++|.+|..+|+ +++|+.+|++++++ .+....++..++.++..+|++++|...+.+.
T Consensus 247 al~~~p~-~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 247 AEKVDRK-ASSNPDLHLNRATLHKYEES-YGEALEGFSQAAAL------DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHCGG-GGGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhCCC-cccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9998321 11667899999999999999 99999999999987 3444578889999999999999999877654
No 142
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=7.1e-18 Score=157.41 Aligned_cols=217 Identities=17% Similarity=0.159 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc--
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD-- 112 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~-- 112 (480)
....++..+|.++...|++++|+.+++++++. .+....++..+|.+|.. .|++++|+.++++++...+.....
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~ 127 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVHAALAVSHTN-EHNANAALASLRAWLLSQPQYEQLGS 127 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSTTTTTC--
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccHHHHH
Confidence 35678889999999999999999999999998 55567788889999544 499999999999988654332111
Q ss_pred -----------------------------------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH
Q psy875 113 -----------------------------------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151 (480)
Q Consensus 113 -----------------------------------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~ 151 (480)
+....++..+|.+|...|++++|+.++++++...+ ..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~ 205 (327)
T 3cv0_A 128 VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP--DD 205 (327)
T ss_dssp ------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC
T ss_pred HHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--Cc
Confidence 11235677999999999999999999999987664 34
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH--
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL-- 229 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-- 229 (480)
..++..+|.+|...|++++|+.+++++++.. +....++..+|.++...|+ +++|+.++++++.+.........
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~ 280 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDIN----PGYVRVMYNMAVSYSNMSQ-YDLAAKQLVRAIYMQVGGTTPTGEA 280 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCccccccccc
Confidence 5789999999999999999999999999983 3446688999999999999 99999999999988654332222
Q ss_pred ----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875 230 ----IRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 230 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
...++..++.++..+|++++|...++++.+....
T Consensus 281 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 281 SREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred hhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 6778899999999999999999999887765443
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.80 E-value=1.2e-17 Score=153.79 Aligned_cols=192 Identities=13% Similarity=0.067 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCc---hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP---EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~ 111 (480)
.....+...+..+...|+|++|++++.++++.. ...+ .....+..+|.+ +...|++++|+.++++|+.+.....+
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAY-VLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHH-HHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 445566788899999999999999999999873 2222 234456678888 45559999999999999998877777
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc---cc-cc-HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD---LC-KD-LASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-- 184 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~---~~-~~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-- 184 (480)
......++.++|.+|..+|++++|+.+|++++... +. +. ...++.++|.+|..+|+|++|+.++++++++...
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 77778899999999999999999999999998542 22 12 2378999999999999999999999999998543
Q ss_pred CcHHHHHHHHHHHHHHHHhCCchHHH-HHHHHHHHHHHHHcCCcHH
Q psy875 185 NFPEAVKTLGEIGDLYELQEKPFELV-VSTHEKALDLARQNKDDKL 229 (480)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~A-~~~~~~al~~~~~~~~~~~ 229 (480)
+....+.++.++|.+|..+|+ +++| ..++++|+.+.+..++...
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~-~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEY-EEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHhCcHhh
Confidence 344568899999999999999 9999 8889999999988877665
No 144
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.80 E-value=5.8e-17 Score=154.65 Aligned_cols=238 Identities=10% Similarity=0.015 Sum_probs=190.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hcc--CchHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy875 24 LHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARN--FPEAVKTLGEIGDLYELQEKSFEIVQSTH 99 (480)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~--~~~~~~~~~~lg~~y~~~~~~~~~A~~~~ 99 (480)
+.+..........+.++..+|.++...|++++|+.++++++++. .+. .+....++.++|.+|+.. |++++|+.++
T Consensus 80 l~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~ 158 (373)
T 1hz4_A 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASA 158 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh-cCHHHHHHHH
Confidence 44444444455667888999999999999999999999999985 122 255677888999995555 9999999999
Q ss_pred HHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc---HHH--HHHHHHHHHHhhccHHHHHHH
Q psy875 100 EKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD---LAS--CYISLAQTYKDNKQYNLAVDY 174 (480)
Q Consensus 100 ~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~---~~~--~~~~la~~y~~~~~~~~A~~~ 174 (480)
++++.+.+..++.. ...++.++|.++...|++++|..++++++....... ... ....++.++...|++++|..+
T Consensus 159 ~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 237 (373)
T 1hz4_A 159 RSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 237 (373)
T ss_dssp HHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999887765444 557888999999999999999999998886543321 111 122455668899999999999
Q ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy875 175 FNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIK 254 (480)
Q Consensus 175 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 254 (480)
+++++.............+..+|.++...|+ +++|...+++++......+.......++..++.++...|++++|...+
T Consensus 238 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 238 LRHTAKPEFANNHFLQGQWRNIARAQILLGE-FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCCCCCCcchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9998876433222233457889999999999 999999999999998888777777789999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy875 255 TELKSLEEKL 264 (480)
Q Consensus 255 ~~~~~l~~~~ 264 (480)
+++..+....
T Consensus 317 ~~al~~~~~~ 326 (373)
T 1hz4_A 317 LDALKLANRT 326 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhccc
Confidence 9999987653
No 145
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=1.2e-17 Score=157.99 Aligned_cols=198 Identities=15% Similarity=0.146 Sum_probs=112.7
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHH
Q psy875 44 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIK 123 (480)
Q Consensus 44 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~ 123 (480)
|.++...|++++|+++++++++. .+....++..+|.+| ...|++++|+.++++++...+.. ..++..+|
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la 195 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEV----CVWDAELRELRAECF-IKEGEPRKAISDLKAASKLKSDN------TEAFYKIS 195 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCSCC------HHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh----CCCchHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence 45555555555555555555554 333334455555553 23355555555555555442211 23455666
Q ss_pred HHHHhcCChHHHHHHHHHHhcccccccHHH----------HHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875 124 KLYKKHDNLDSACSELHTVLSSDLCKDLAS----------CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL 193 (480)
Q Consensus 124 ~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~----------~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 193 (480)
.+|...|++++|+.+|++++...+...... ....+|.++...|++++|+.+++++++..+.++......+
T Consensus 196 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 275 (359)
T 3ieg_A 196 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSK 275 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 666666666666666666655444322211 1223466666666666666666666666544444444556
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 194 GEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
..+|.++...|+ +++|+.+++++++. .+....++..+|.++...|++++|..+++++.+
T Consensus 276 ~~la~~~~~~~~-~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 276 ERICHCFSKDEK-PVEAIRICSEVLQM------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccC-HHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667777777777 77777777777665 222345666777777777777777777776655
No 146
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.80 E-value=1.5e-18 Score=157.76 Aligned_cols=205 Identities=16% Similarity=0.138 Sum_probs=172.3
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT 117 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~ 117 (480)
.+++..|.+++..|++++|+.+|+++++. .+....++..+|.+|... |++++|+.++++++.. . .++.....
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~-~--~~~~~~~~ 75 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYNRRAVCYYEL-AKYDLAQKDIETYFSK-V--NATKAKSA 75 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT----TCCCSTTHHHHHHHHHHT-TCHHHHHHHHHHHHTT-S--CTTTCCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhc-c--CchhHHHH
Confidence 45788999999999999999999999998 444445778899995555 9999999999999983 2 33444577
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG 197 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~ 197 (480)
++..+|.+|...|++++|+.+|++++...+. ...++..+|.+|..+|++++|+.+|+++++. .+....++.++|
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~l~ 149 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTT--RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----TTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS----SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc----CCCcHHHHHHHH
Confidence 8999999999999999999999999987654 3478999999999999999999999999988 444567899999
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHh
Q psy875 198 DLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK---FTELEQIKTELKSLEEK 263 (480)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~l~~~ 263 (480)
...+..++ +++|+.+|++++++. +....++..++.++..+|+ +++|..+++++.++...
T Consensus 150 ~~~~~~~~-~~~A~~~~~~a~~~~------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 211 (272)
T 3u4t_A 150 QAYYYNKE-YVKADSSFVKVLELK------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211 (272)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhC------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc
Confidence 55555668 999999999999873 3335778889999999999 99999999999987654
No 147
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.80 E-value=2.3e-18 Score=176.17 Aligned_cols=174 Identities=12% Similarity=0.207 Sum_probs=154.8
Q ss_pred cCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc
Q psy875 70 NFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK 149 (480)
Q Consensus 70 ~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~ 149 (480)
..|..+.+++++|.+|..+ |++++|+.+|++|+++.+.. ..++.++|.+|..+|++++|+.+|+++++.. +
T Consensus 4 s~P~~a~al~nLG~~~~~~-G~~~eAi~~~~kAl~l~P~~------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P 74 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQ-GNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRIS--P 74 (723)
T ss_dssp --CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred CCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 3577889999999995555 99999999999999985432 6789999999999999999999999999776 4
Q ss_pred cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH
Q psy875 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL 229 (480)
Q Consensus 150 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 229 (480)
..+.++.++|.+|..+|++++|+++|++++++ .+..+.++.++|.+|..+|+ +++|+.+|++|+++ .+.
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l----~P~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~l------~P~ 143 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQI----NPAFADAHSNLASIHKDSGN-IPEAIASYRTALKL------KPD 143 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CSC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh------CCC
Confidence 55689999999999999999999999999999 55567899999999999999 99999999999988 445
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875 230 IRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 230 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
...++.+|+.++..+|++++|.+.++++.++...
T Consensus 144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 5678999999999999999999999999987644
No 148
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.79 E-value=2.3e-17 Score=150.22 Aligned_cols=223 Identities=15% Similarity=0.106 Sum_probs=177.4
Q ss_pred hHHHhhccchhhhhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHhhccCchHHHHHH
Q psy875 4 KIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELRLHARNFPEAVKTLG 79 (480)
Q Consensus 4 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 79 (480)
+.++.+|.. +...++....+...++.-. .....+++.+|.+|.. .+++++|+.+|+++++. . ...++.
T Consensus 7 ~a~~~lg~~-~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~--~~~a~~ 78 (273)
T 1ouv_A 7 KELVGLGAK-SYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N--YSNGCH 78 (273)
T ss_dssp HHHHHHHHH-HHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T--CHHHHH
T ss_pred HHHHHHHHH-HHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C--CHHHHH
Confidence 456677776 4333442222111111100 2334689999999999 99999999999999987 2 466788
Q ss_pred HHHHHHHH---hhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhcccccccHH
Q psy875 80 EIGDLYEL---QEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLA 152 (480)
Q Consensus 80 ~lg~~y~~---~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~ 152 (480)
.+|.+|.. ..+++++|+.+|++|+... ...++.++|.+|.. .+++++|+.+|++++... ..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~ 146 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK--------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DG 146 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC--------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cH
Confidence 99999555 0499999999999999762 25678999999999 999999999999998654 24
Q ss_pred HHHHHHHHHHHh----hccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHHHHHc
Q psy875 153 SCYISLAQTYKD----NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDLARQN 224 (480)
Q Consensus 153 ~~~~~la~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~~~~~ 224 (480)
.++.++|.+|.. .+++++|+.+|+++++.. ...++.++|.+|.. .++ +++|+.+|+++++.
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~-~~~A~~~~~~a~~~---- 215 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK------DSPGCFNAGNMYHHGEGATKN-FKEALARYSKACEL---- 215 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTCSSCCC-HHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCcc-HHHHHHHHHHHHhC----
Confidence 678899999998 999999999999998761 24678899999999 999 99999999999875
Q ss_pred CCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHH
Q psy875 225 KDDKLIRTVMRSMKKLYKK----HDKFTELEQIKTELKSLE 261 (480)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~l~ 261 (480)
+ + ..++..++.+|.. .+++++|..+++++.++.
T Consensus 216 ~-~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 216 E-N---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp T-C---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred C-C---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 1 1 5678899999999 999999999999998864
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.78 E-value=2.2e-17 Score=142.99 Aligned_cols=190 Identities=13% Similarity=0.104 Sum_probs=160.0
Q ss_pred hccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q psy875 48 KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYK 127 (480)
Q Consensus 48 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~ 127 (480)
...|++++|.+.++... .+......++..+|.+|... |++++|+.++++++.+....++.+....++.++|.+|.
T Consensus 3 ~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 77 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL----AHPATASGARFMLGYVYAFM-DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER 77 (203)
T ss_dssp ----CHHHHHHHHHHHH----TSTTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 46789999999554432 23556788999999995555 99999999999999999999888999999999999999
Q ss_pred hcCChHHHHHHHHHHhcccc----cc-cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHH
Q psy875 128 KHDNLDSACSELHTVLSSDL----CK-DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLY 200 (480)
Q Consensus 128 ~~~~~~~A~~~~~~~l~~~~----~~-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~ 200 (480)
..|++++|+.++++++.... .+ ..+.++.++|.++..+|++++|+.++++++++... ++...+.++.++|.++
T Consensus 78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 99999999999999887632 12 45788999999999999999999999999988654 4556677889999999
Q ss_pred HHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy875 201 ELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK 243 (480)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (480)
...|+ +++|..++++++++.++.++......+...++.+...
T Consensus 158 ~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
T 3gw4_A 158 QQEKN-LLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHH 199 (203)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-
T ss_pred HHCcC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchhhc
Confidence 99999 9999999999999999999999888888888766443
No 150
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.78 E-value=1.3e-18 Score=138.43 Aligned_cols=94 Identities=47% Similarity=0.754 Sum_probs=91.0
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC
Q psy875 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG 464 (480)
Q Consensus 385 g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~ 464 (480)
|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++ .+|..|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN--AKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTT
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc--ccCCCCCcHHHHHHHcC
Confidence 8999999999999999999999999999999999999999999999999999999999999 56899999999999999
Q ss_pred CHHHHHHHHHcCCCCC
Q psy875 465 HTDIVQALVSAGAEVS 480 (480)
Q Consensus 465 ~~~~~~~Ll~~ga~~~ 480 (480)
+.+++++|+++|++++
T Consensus 80 ~~~~~~~Ll~~g~~~~ 95 (126)
T 1n0r_A 80 HLEVVKLLLEAGADVN 95 (126)
T ss_dssp CHHHHHHHHHTTCCTT
T ss_pred hHHHHHHHHHcCCCCc
Confidence 9999999999999874
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.78 E-value=1.1e-17 Score=154.05 Aligned_cols=191 Identities=13% Similarity=0.055 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCch---HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE---AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
...+...+..+...|+|++|+++++++++. ....+. ....+..+|.+| ...+++++|+.++++|+.+.....+..
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKK-EEYHPEFQQFLQWQYYVAAYV-LKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHhcccccHH
Confidence 344556678888999999999999999886 332232 234455689984 455899999999999999877777777
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc-----ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--Cc
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD-----LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NF 186 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~-----~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~ 186 (480)
..+.++.++|.+|..+|++++|+.+|++++... ..+..+.++.++|.+|..+|+|++|++++++++++... +.
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 778899999999999999999999999998532 22455779999999999999999999999999998655 45
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH
Q psy875 187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL 229 (480)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 229 (480)
...+.++.++|.+|..+|+++++|+.+|++|+.+++..++...
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~ 275 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGG
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHH
Confidence 6678999999999999995269999999999999998877653
No 152
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=3.4e-18 Score=168.57 Aligned_cols=214 Identities=16% Similarity=0.018 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhh
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLAR 107 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~ 107 (480)
.+..+.+|+.||.++..+|++++|+++|++|+++. ....+..+.+|.++|.+|+.. |++++|+.++++++.+.+
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~-g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM-GRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhH
Confidence 34457789999999999999999999999999986 223456678899999996655 999999999999999877
Q ss_pred cCCCc--hHHHHHHHHHHHHHHhc--CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh---hccHHHHHHHHHHHHh
Q psy875 108 QNKDD--KLIRTVMRSIKKLYKKH--DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD---NKQYNLAVDYFNKELR 180 (480)
Q Consensus 108 ~~~~~--~~~~~~~~~l~~~y~~~--~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~---~~~~~~A~~~~~~al~ 180 (480)
..... ...+.++.++|..+... ++|++|+.+|++++...|. ...++..+|.++.. .+++++|++.++++++
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~--~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK--NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 65432 34567788888877665 5799999999999987754 34667777777554 4677899999999999
Q ss_pred hhhcCcHHHHHHHHHHHHH----HHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875 181 LHARNFPEAVKTLGEIGDL----YELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTE 256 (480)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 256 (480)
+.+.+ ..++..+|.. +...++ +++|..++++++.. .+....++..+|.+|...|++++|..++++
T Consensus 204 l~p~~----~~~~~~l~~~~~~~~~~~~~-~~~a~~~~~~al~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 204 LNPDN----QYLKVLLALKLHKMREEGEE-EGEGEKLVEEALEK------APGVTDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp HCSSC----HHHHHHHHHHHHHCC-------CHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCcc----hHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHh------CccHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 84443 3445555544 445567 88999999999876 344566788999999999999999999999
Q ss_pred HHHH
Q psy875 257 LKSL 260 (480)
Q Consensus 257 ~~~l 260 (480)
+.++
T Consensus 273 al~~ 276 (472)
T 4g1t_A 273 ALEY 276 (472)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.78 E-value=3.2e-17 Score=150.91 Aligned_cols=190 Identities=14% Similarity=0.094 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----cc
Q psy875 75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KD 150 (480)
Q Consensus 75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~ 150 (480)
...+...+..|... |+|++|+.++.+++...+...........+..+|.+|...|++++|+.+|++++..... ..
T Consensus 75 ~~~l~~~~~~~~~~-~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQ-KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHh-hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 34455667774555 99999999999999887654444555666788999999999999999999999865433 23
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCc
Q psy875 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDD 227 (480)
Q Consensus 151 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 227 (480)
.+.++.++|.+|..+|+|++|+.+|++++++... +......++.++|.+|..+|+ |++|+.++++++++....++.
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-HHHHHHHHHHHHHHHHhcCcH
Confidence 4678999999999999999999999999977544 222334799999999999999 999999999999998877777
Q ss_pred HHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHhhcc
Q psy875 228 KLIRTVMRSMKKLYKKHDKFTEL-EQIKTELKSLEEKLDL 266 (480)
Q Consensus 228 ~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~l~~~~~~ 266 (480)
.....++..+|.+|..+|++++| ..+++++..+.+.++.
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 77889999999999999999999 8899999998877654
No 154
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.78 E-value=3.4e-17 Score=150.75 Aligned_cols=189 Identities=15% Similarity=0.115 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccH
Q psy875 76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDL 151 (480)
Q Consensus 76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~ 151 (480)
..+...+..+... |+|++|+..+++++......++.......+..+|.+|...+++++|+.+|++++..... ...
T Consensus 76 ~~l~~~i~~~~~~-~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 76 KQFKDQVIMLCKQ-KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHHHH-hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 3344446663455 99999999999999865544333444556777999999999999999999999975332 223
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK 228 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 228 (480)
+.++.++|.+|..+|+|++|+.+|+++++.... +.+..+.++.++|.+|..+|+ |++|+.++++++++.+..++..
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHcCcHH
Confidence 668999999999999999999999999987553 567778899999999999999 9999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhhcc
Q psy875 229 LIRTVMRSMKKLYKKHDK-FTELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~l~~~~~~ 266 (480)
....++..+|.+|.++|+ +++|..+++++..+.+.++.
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 899999999999999995 69999999999999987765
No 155
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.78 E-value=1.7e-18 Score=164.49 Aligned_cols=228 Identities=9% Similarity=0.026 Sum_probs=178.7
Q ss_pred hHHHhhccchhhhhhhHHHHhh-hhhhhhHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccCchHHHHHHHH
Q psy875 4 KIALSRGIGLSDSLDSACTELH-TVLSSDLCKDLASCYISLAQTYKDNKQ-YNLAVDYFNKELRLHARNFPEAVKTLGEI 81 (480)
Q Consensus 4 ~~~~~~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~l 81 (480)
.+|..+|.+ +...+....++. +.+.....+....+++++|.++...|+ +++|+.+|++++++ .+....+|+++
T Consensus 98 ~a~~~lg~~-~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----~P~~~~a~~~~ 172 (382)
T 2h6f_A 98 DVYDYFRAV-LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHH-HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred HHHHHHHHH-HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----CCCCHHHHHHH
Confidence 456666666 333333222211 122223444567899999999999997 99999999999999 77788899999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH
Q psy875 82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT 161 (480)
Q Consensus 82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~ 161 (480)
|.+| ..+|++++|+.+|++|+.+.+.. ..++.++|.++..+|++++|+.+|++++...+ ....+++++|.+
T Consensus 173 g~~~-~~~g~~~eAl~~~~kal~ldP~~------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P--~~~~a~~~lg~~ 243 (382)
T 2h6f_A 173 RVLV-EWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV--RNNSVWNQRYFV 243 (382)
T ss_dssp HHHH-HHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHH-HHccCHHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence 9994 55599999999999999985533 57889999999999999999999999997765 455889999999
Q ss_pred HHh-hccHHHH-----HHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy875 162 YKD-NKQYNLA-----VDYFNKELRLHARNFPEAVKTLGEIGDLYELQE--KPFELVVSTHEKALDLARQNKDDKLIRTV 233 (480)
Q Consensus 162 y~~-~~~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 233 (480)
+.. .|.+++| +.+|++++++ .|....+|.++|.++...| + +++|++.++++ + ..+....+
T Consensus 244 l~~l~~~~~eA~~~~el~~~~~Al~l----~P~~~~a~~~l~~ll~~~g~~~-~~~a~~~~~~~-~------~~p~~~~a 311 (382)
T 2h6f_A 244 ISNTTGYNDRAVLEREVQYTLEMIKL----VPHNESAWNYLKGILQDRGLSK-YPNLLNQLLDL-Q------PSHSSPYL 311 (382)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHTTTCGGG-CHHHHHHHHHH-T------TTCCCHHH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHccCccc-hHHHHHHHHHh-c------cCCCCHHH
Confidence 999 5655888 5999999998 4555679999999999988 6 89998888664 1 13334567
Q ss_pred HHHHHHHHHHcC--------C-hHHHHHHHHHH
Q psy875 234 MRSMKKLYKKHD--------K-FTELEQIKTEL 257 (480)
Q Consensus 234 ~~~l~~~~~~~g--------~-~~~A~~~~~~~ 257 (480)
+..|+.+|.++| + +++|..+++++
T Consensus 312 l~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 312 IAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 888999999985 2 47888888876
No 156
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.78 E-value=4.5e-17 Score=159.39 Aligned_cols=203 Identities=15% Similarity=0.121 Sum_probs=170.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875 40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVM 119 (480)
Q Consensus 40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~ 119 (480)
++.+|.++...|++++|+.+|+++++. .+....++..+|.+|.. .|++++|+.++++++...+.. ..++
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~------~~~~ 214 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEV----CVWDAELRELRAECFIK-EGEPRKAISDLKAASKLKNDN------TEAF 214 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCGGGGHHHHHHHHHHHCSC------HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCC------HHHH
Confidence 566788899999999999999999988 55666788899999544 599999999999999875432 4678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcccccccHH-H---------HHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875 120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA-S---------CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA 189 (480)
Q Consensus 120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~-~---------~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 189 (480)
..+|.+|...|++++|+.+|++++...+..... . ....+|.++...|++++|+.+|++++++.+.++...
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 294 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHH
Confidence 899999999999999999999998776553321 1 123449999999999999999999999866655556
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
...+..+|.++...|+ +++|+.++++++.+ .+....++..++.++...|++++|..+++++.++
T Consensus 295 ~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 295 VRSKERICHCFSKDEK-PVEAIRVCSEVLQM------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHTTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 7789999999999999 99999999999887 3334578889999999999999999999998763
No 157
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.78 E-value=1.1e-16 Score=152.80 Aligned_cols=224 Identities=8% Similarity=-0.071 Sum_probs=184.9
Q ss_pred hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccC--chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF--PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ 108 (480)
Q Consensus 31 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~ 108 (480)
+.....+.++..+|.++...|++++|+.++++++... ... .....++..+|.+|... |++++|+.++++++.+.+.
T Consensus 8 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~ 85 (373)
T 1hz4_A 8 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCK-GELTRSLALMQQTEQMARQ 85 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHh
Confidence 3455667888999999999999999999999999983 222 22456788899995555 9999999999999999998
Q ss_pred CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875 109 NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH 182 (480)
Q Consensus 109 ~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~ 182 (480)
.++......++.++|.++...|++++|+.++++++...+. +....++.++|.+|..+|++++|..++++++++.
T Consensus 86 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 86 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 8888778888999999999999999999999998876532 3456788999999999999999999999999986
Q ss_pred hc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 183 AR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK-LIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 183 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
.. .++....++..+|.++...|+ +++|..++++++.+....+.+. ........++.++...|++++|..+++++
T Consensus 166 ~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 166 SSYQPQQQLQCLAMLIQCSLARGD-LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 65 233356788999999999999 9999999999998876655432 22222335667789999999999998765
No 158
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=3.9e-17 Score=154.35 Aligned_cols=202 Identities=14% Similarity=0.078 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
+..++.+|..+...|++++|+.+|+++++. .+....++..+|.+|.. .|++++|+.++++++...+.. .
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~------~ 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLA-MGKSKAALPDLTKVIALKMDF------T 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTC------H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCc------c
Confidence 467899999999999999999999999998 55667788999999555 499999999999999884322 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccc-cHHHHHH------------HHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-DLASCYI------------SLAQTYKDNKQYNLAVDYFNKELRLHA 183 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~------------~la~~y~~~~~~~~A~~~~~~al~~~~ 183 (480)
.++..+|.+|...|++++|+.+|++++...+.. ....++. .+|.++...|++++|+.+++++++..
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 150 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC- 150 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 678999999999999999999999999877610 2223333 34899999999999999999999983
Q ss_pred cCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 184 RNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
+....++..+|.++...|+ +++|+..+++++.. .+....++..++.++...|++++|..+++++.++
T Consensus 151 ---~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 151 ---VWDAELRELRAECFIKEGE-PRKAISDLKAASKL------KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp ---TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTT------CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---CCchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3446789999999999999 99999999999875 2333468889999999999999999999998764
No 159
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.78 E-value=2.1e-17 Score=149.50 Aligned_cols=206 Identities=15% Similarity=0.173 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
.+..++.+|..++..|+|++|+..|+++++. .+..+....+++.+|.+|+.. |++++|+.+|++++...+.. +..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~p~~---~~~ 88 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-GRTHEWAADAQFYLARAYYQN-KEYLLAASEYERFIQIYQID---PRV 88 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-CSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC---TTH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCCcchHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHCCCC---chh
Confidence 3578999999999999999999999999988 555555588999999996555 99999999999999986543 345
Q ss_pred HHHHHHHHHHHHh--------cCChHHHHHHHHHHhcccccccH-HHHH--------------HHHHHHHHhhccHHHHH
Q psy875 116 RTVMRSIKKLYKK--------HDNLDSACSELHTVLSSDLCKDL-ASCY--------------ISLAQTYKDNKQYNLAV 172 (480)
Q Consensus 116 ~~~~~~l~~~y~~--------~~~~~~A~~~~~~~l~~~~~~~~-~~~~--------------~~la~~y~~~~~~~~A~ 172 (480)
..++..+|.+|.. +|++++|+.+|++++...|.... ..+. +.+|.+|..+|+|++|+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 6789999999999 99999999999999988776432 3333 88999999999999999
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh----------CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy875 173 DYFNKELRLHARNFPEAVKTLGEIGDLYELQ----------EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYK 242 (480)
Q Consensus 173 ~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 242 (480)
.+|+++++..+. .+....++..+|.+|..+ |+ +++|+..|+++++. .++.+....+...++.++.
T Consensus 169 ~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~-~~~A~~~~~~~~~~---~p~~~~~~~a~~~l~~~~~ 243 (261)
T 3qky_A 169 VTYEAVFDAYPD-TPWADDALVGAMRAYIAYAEQSVRARQPER-YRRAVELYERLLQI---FPDSPLLRTAEELYTRARQ 243 (261)
T ss_dssp HHHHHHHHHCTT-STTHHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CchHHHHHHHHHHHHHHhcccchhhcccch-HHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHH
Confidence 999999988544 234678899999999977 88 99999999998765 3556667788888888888
Q ss_pred HcCChHHHH
Q psy875 243 KHDKFTELE 251 (480)
Q Consensus 243 ~~g~~~~A~ 251 (480)
.+++++++.
T Consensus 244 ~~~~~~~~~ 252 (261)
T 3qky_A 244 RLTELEGDA 252 (261)
T ss_dssp HHHHHHTCT
T ss_pred HHHHhhhhh
Confidence 888876543
No 160
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.77 E-value=3.6e-20 Score=165.60 Aligned_cols=93 Identities=32% Similarity=0.397 Sum_probs=89.5
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCC-CCCCcHHHHHHHc
Q psy875 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQD-SAGWLPLHEAANH 463 (480)
Q Consensus 385 g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-~~g~tpl~~A~~~ 463 (480)
|.||||+|+..|+.++++.|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++ .++ ..|.||||+|+..
T Consensus 45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 45 YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD--HRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCSSSCCCHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--cCCCCCCCCHHHHHHHc
Confidence 8999999999999999999999 99999999999999999999999999999999999999 446 7899999999999
Q ss_pred CCHHHHHHHHHcCCCCC
Q psy875 464 GHTDIVQALVSAGAEVS 480 (480)
Q Consensus 464 ~~~~~~~~Ll~~ga~~~ 480 (480)
|+.+++++|+++|++++
T Consensus 122 g~~~~v~~Ll~~ga~~~ 138 (244)
T 3ui2_A 122 VRPEVVEALVELGADIE 138 (244)
T ss_dssp TCHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHCCCCCC
Confidence 99999999999999985
No 161
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.77 E-value=1.7e-18 Score=134.04 Aligned_cols=90 Identities=32% Similarity=0.427 Sum_probs=84.9
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460 (480)
Q Consensus 381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A 460 (480)
.+.+|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++ ..|..|.||||+|
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~~A 97 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX--AQDKFGKTAFDIS 97 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccccCCCcHHHHH
Confidence 35569999999999999999999999999999999999999999999999999999999999999 5699999999999
Q ss_pred HHcCCHHHHHHH
Q psy875 461 ANHGHTDIVQAL 472 (480)
Q Consensus 461 ~~~~~~~~~~~L 472 (480)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 999999999987
No 162
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.77 E-value=3.8e-17 Score=166.03 Aligned_cols=205 Identities=14% Similarity=0.075 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
...+++.+|.+|...|++++|+++|++++++ .+....+|..+|.+|.. .|++++|+..|++++...+..
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~------ 440 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTM----DPQFGPAWIGFAHSFAI-EGEHDQAISAYTTAARLFQGT------ 440 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTTTC------
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccc------
Confidence 3567888999999999999999999999998 55666788899999544 499999999999999775432
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---CcHHHHHH
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKT 192 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~ 192 (480)
..++..+|.+|...|++++|+.+|++++...+. ...++..+|.+|...|++++|+++|+++++..+. ++.....+
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQY--DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 456788999999999999999999999876543 4477999999999999999999999999988543 33334788
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
+..+|.++...|+ +++|+..++++++.. +....++..++.+|...|++++|..+++++.++
T Consensus 519 ~~~l~~~~~~~g~-~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 519 WANLGHAYRKLKM-YDAAIDALNQGLLLS------TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999 999999999998772 333578889999999999999999999998875
No 163
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.77 E-value=2.1e-17 Score=165.56 Aligned_cols=206 Identities=18% Similarity=0.188 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
..+++.+|.++...|++++|+++|+++++. .+....++..+|.+|. ..|++++|+.++++++...+.. .
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~------~ 344 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDL----NPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPEN------V 344 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC------S
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCC------H
Confidence 567888999999999999999999999888 5556677888999954 4499999999999999875432 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCc--HHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF--PEAVKTLG 194 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~ 194 (480)
.++..+|.+|...|++++|+.+|++++...+.. ..++..+|.+|...|++++|+.+|+++++..+... ......+.
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTL--PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 567889999999999999999999988766443 46788899999999999999999999998865422 22234467
Q ss_pred HHHHHHHHh----------CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875 195 EIGDLYELQ----------EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE 262 (480)
Q Consensus 195 ~l~~~~~~~----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~ 262 (480)
.+|.++... |+ +++|+.+|+++++. .+....++..++.+|..+|++++|..+++++.++..
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEK-FNAAIKLLTKACEL------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHTC----CCHHH-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhccchhhhHhH-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 788888888 99 99999999999877 233447889999999999999999999999988653
No 164
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=2.5e-19 Score=140.19 Aligned_cols=108 Identities=29% Similarity=0.318 Sum_probs=97.0
Q ss_pred CcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC
Q psy875 332 NLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPV 411 (480)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~ 411 (480)
.+..+.++++.|+..|+.+++++|+++|++++..+ ..|.||||+|+..++.+++++|++.|+++
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 68 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS----------------KDGNTPLHLAAKNGHAEIVKLLLAKGADV 68 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCC----------------SSSCCTTHHHHTTTCHHHHHHHTTTTCCT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC----------------CCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence 45677889999999999999999999999987653 34999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHH
Q psy875 412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPL 457 (480)
Q Consensus 412 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl 457 (480)
+.+|..|+||||+|+..++.+++++|+++|++++ ..+..|.||-
T Consensus 69 ~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n--~~~~~~~~~~ 112 (115)
T 2l6b_A 69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN--ARSWGSSHHH 112 (115)
T ss_dssp TCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHH--HHSCCCC---
T ss_pred cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--cCCccccccc
Confidence 9999999999999999999999999999999999 5588898884
No 165
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.77 E-value=3.7e-21 Score=181.70 Aligned_cols=143 Identities=11% Similarity=0.047 Sum_probs=101.6
Q ss_pred CCccchhhhccCCCcCC--------------CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875 314 RAPRSHFLIKRNDKDSN--------------LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSL 379 (480)
Q Consensus 314 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~ 379 (480)
++||||+|+..|..++- ..+..+.+++++|+..|+.++|++|+++|+++......
T Consensus 92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~----------- 160 (376)
T 2aja_A 92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ----------- 160 (376)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS-----------
T ss_pred cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccC-----------
Confidence 44777777666554331 11223456888888888888888888888763221100
Q ss_pred cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC--CCCCCChHHHHHH-HcCCHHHHHHHHHcCCCCCCccCCCCCCcH
Q psy875 380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV--QDSAGWLPLHEAA-NHGHTDIVQALVSAGADPNDKVQDSAGWLP 456 (480)
Q Consensus 380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~--~~~~g~t~l~~a~-~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tp 456 (480)
+. +.||||+|+..|+.++|++|+++|++++. .|..|+||||+|+ ..|+.++|++|+++|+ .|.||
T Consensus 161 --~~-~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga---------~~~ta 228 (376)
T 2aja_A 161 --AE-NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV---------MLAYA 228 (376)
T ss_dssp --HH-HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH---------HHHHH
T ss_pred --CC-CCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC---------ccchH
Confidence 00 37888888888888888888888888776 6777888888888 8888888888887652 26788
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCC
Q psy875 457 LHEAANHGHTDIVQALVSAGAEV 479 (480)
Q Consensus 457 l~~A~~~~~~~~~~~Ll~~ga~~ 479 (480)
||+|+..|+.+++++|+++|+++
T Consensus 229 L~~Aa~~g~~evv~lL~~~ga~~ 251 (376)
T 2aja_A 229 EIHEFEYGEKYVNPFIARHVNRL 251 (376)
T ss_dssp HHCTTTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhcCccc
Confidence 88888888888888888877653
No 166
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.76 E-value=1.8e-18 Score=147.41 Aligned_cols=93 Identities=32% Similarity=0.397 Sum_probs=89.5
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCC-CCCCcHHHHHHHc
Q psy875 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQD-SAGWLPLHEAANH 463 (480)
Q Consensus 385 g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-~~g~tpl~~A~~~ 463 (480)
|.||||+|+..|+.++++.|++ |++++.+|..|+||||+|+..|+.+++++|+++|++++ .++ ..|+||||+|+..
T Consensus 44 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~~g~tpL~~A~~~ 120 (183)
T 3deo_A 44 YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD--HRDMRGGLTALHMAAGY 120 (183)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCSSSSCCHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCCCHHHHHHhc
Confidence 8999999999999999999999 99999999999999999999999999999999999999 446 8899999999999
Q ss_pred CCHHHHHHHHHcCCCCC
Q psy875 464 GHTDIVQALVSAGAEVS 480 (480)
Q Consensus 464 ~~~~~~~~Ll~~ga~~~ 480 (480)
|+.+++++|+++|++++
T Consensus 121 ~~~~~v~~Ll~~ga~~~ 137 (183)
T 3deo_A 121 VRPEVVEALVELGADIE 137 (183)
T ss_dssp TCHHHHHHHHHHTCCTT
T ss_pred CcHHHHHHHHHcCCCCc
Confidence 99999999999999975
No 167
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.76 E-value=6.6e-17 Score=158.19 Aligned_cols=206 Identities=14% Similarity=0.073 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
.+..+.+++.+|..+...|++++|+.+|+++++. .+....++..+|.+|... |++++|+.+++++++..+.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~---- 92 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAM-GKSKAALPDLTKVIQLKMD---- 92 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT----
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCC----
Confidence 3456788999999999999999999999999998 566688899999995554 9999999999999988543
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc---HH----------HHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD---LA----------SCYISLAQTYKDNKQYNLAVDYFNKEL 179 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~---~~----------~~~~~la~~y~~~~~~~~A~~~~~~al 179 (480)
...++..+|.+|..+|++++|+.+|++++...+... .. ..+..+|.++...|++++|+.+|++++
T Consensus 93 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 93 --FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 256889999999999999999999999998765432 11 124456888999999999999999999
Q ss_pred hhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 180 RLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
+. .+....++..+|.+|...|+ +++|+..|++++... +....++..++.+|...|++++|..+++++..
T Consensus 171 ~~----~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 171 EV----CVWDAELRELRAECFIKEGE-PRKAISDLKAASKLK------NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HH----CTTCHHHHHHHHHHHHHTTC-GGGGHHHHHHHHHHH------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hh----CCCChHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88 34446789999999999999 999999999998873 22356788999999999999999999999875
Q ss_pred H
Q psy875 260 L 260 (480)
Q Consensus 260 l 260 (480)
+
T Consensus 240 ~ 240 (450)
T 2y4t_A 240 L 240 (450)
T ss_dssp H
T ss_pred h
Confidence 4
No 168
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.6e-16 Score=148.18 Aligned_cols=203 Identities=14% Similarity=0.116 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
...++.+|..+...|++++|+.+|+++++. .+....++..+|.+|... |++++|+.++++++...+.. .
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~------~ 89 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQA----APEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKD------I 89 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------H
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcCC------H
Confidence 446789999999999999999999999998 566677888999995555 99999999999999874422 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccccc-----------------------------------------------c
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-----------------------------------------------K 149 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-----------------------------------------------~ 149 (480)
.++..+|.+|...|++++|+.+|++++...+. +
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 67889999999999999999999877643221 2
Q ss_pred cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH
Q psy875 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL 229 (480)
Q Consensus 150 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 229 (480)
....++..+|.+|...|++++|+.+++++++.. +....++..+|.++...|+ +++|+.+++++++.. +.
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~------~~ 238 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR----PDDAQLWNKLGATLANGNR-PQEALDAYNRALDIN------PG 238 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC------TT
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC------CC
Confidence 235678889999999999999999999999883 3445788899999999999 999999999998762 33
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 230 IRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 230 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
...++..++.++..+|++++|..+++++.++.
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 45578889999999999999999999988764
No 169
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.76 E-value=7.8e-19 Score=161.54 Aligned_cols=132 Identities=21% Similarity=0.109 Sum_probs=106.3
Q ss_pred hccCCccchhhhccCCCcCCC------CcCCCchHHHHHHhh---CcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875 311 NRKRAPRSHFLIKRNDKDSNL------NLYNIESITISRNRL---GAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE 381 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~~~---~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (480)
...|+......+...+.+++. .+..+.++|+.|+.. |+.+++++|+++|++++..+
T Consensus 159 ~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d--------------- 223 (301)
T 2b0o_E 159 ICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA--------------- 223 (301)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCC---------------
T ss_pred hhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCC---------------
Confidence 334444444444456667776 577889999999987 89999999999999998754
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461 (480)
Q Consensus 382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~ 461 (480)
..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++ .|.||||+|+
T Consensus 224 -~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh~A~ 294 (301)
T 2b0o_E 224 -ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLHVDY 294 (301)
T ss_dssp -TTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC---
T ss_pred -CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhHHHH
Confidence 3599999999999999999999999999999999999999999999999999999999864 3789999999
Q ss_pred HcCCH
Q psy875 462 NHGHT 466 (480)
Q Consensus 462 ~~~~~ 466 (480)
..|+.
T Consensus 295 ~~g~~ 299 (301)
T 2b0o_E 295 SWVIS 299 (301)
T ss_dssp -----
T ss_pred hcCCc
Confidence 98864
No 170
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.76 E-value=7.2e-20 Score=172.87 Aligned_cols=128 Identities=18% Similarity=0.253 Sum_probs=103.4
Q ss_pred CchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC---C
Q psy875 336 IESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPV---K 412 (480)
Q Consensus 336 ~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~---~ 412 (480)
+.++++.|+..|+.++|++|++.|+....... .+..|.||||+|+..|+.++|++|+++|+++ +
T Consensus 92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~-------------~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~ 158 (376)
T 2aja_A 92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKV-------------IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 158 (376)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---------------CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH
T ss_pred cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHH-------------hccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccc
Confidence 45999999999999999999999983211100 0112789999999999999999999999763 2
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH-HcCCHHHHHHHHHcCC
Q psy875 413 VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA-NHGHTDIVQALVSAGA 477 (480)
Q Consensus 413 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~-~~~~~~~~~~Ll~~ga 477 (480)
..+.. +||||+|+..|+.+++++|+++|++++....|..|.||||+|+ ..|+.+++++|+++|+
T Consensus 159 i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga 223 (376)
T 2aja_A 159 IQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223 (376)
T ss_dssp HSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred cCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC
Confidence 22222 9999999999999999999999999873115778999999999 9999999999998764
No 171
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.76 E-value=1.8e-18 Score=152.34 Aligned_cols=95 Identities=38% Similarity=0.448 Sum_probs=91.6
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCccCCCCCCcHHHHHHH
Q psy875 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA-GADPNDKVQDSAGWLPLHEAAN 462 (480)
Q Consensus 384 ~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~g~tpl~~A~~ 462 (480)
+|.||||+|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|++. |++++ .+|..|.||||+|+.
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~--~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN--QQNKLGDTALHAAAW 149 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC--CCCTTSCCHHHHHHH
T ss_pred ccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc--ccCCCCCCHHHHHHH
Confidence 389999999999999999999999999999999999999999999999999999999 99999 669999999999999
Q ss_pred cCCHHHHHHHHHcCCCCC
Q psy875 463 HGHTDIVQALVSAGAEVS 480 (480)
Q Consensus 463 ~~~~~~~~~Ll~~ga~~~ 480 (480)
.|+.+++++|+++|++++
T Consensus 150 ~~~~~~v~~Ll~~ga~~~ 167 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTD 167 (222)
T ss_dssp HTCHHHHHHHHHHTCCSC
T ss_pred cCCHHHHHHHHHcCCCCc
Confidence 999999999999999875
No 172
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.75 E-value=2.1e-16 Score=143.85 Aligned_cols=191 Identities=23% Similarity=0.273 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL---QEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~---~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
.+.+++.+|.++...|++++|+++|+++++. ....++..+|.+|.. ..+++++|+.+|++|++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------
Confidence 3568899999999999999999999999874 234678899999555 0499999999999999762
Q ss_pred hHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHHhhhhc
Q psy875 113 KLIRTVMRSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~~~~ 184 (480)
...++.++|.+|.. .+++++|+.+|++++... ...++.++|.+|.. .+++++|+.+|+++++..
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-- 144 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-- 144 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--
Confidence 25678899999999 999999999999998653 45789999999999 999999999999999862
Q ss_pred CcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHH
Q psy875 185 NFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK----HDKFTELEQIKTE 256 (480)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 256 (480)
...++.++|.+|.. .++ +++|+.+|+++++. + ...++..++.+|.. .+++++|..++++
T Consensus 145 ----~~~a~~~lg~~~~~~~~~~~~-~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 211 (273)
T 1ouv_A 145 ----DGDGCTILGSLYDAGRGTPKD-LKKALASYDKACDL----K----DSPGCFNAGNMYHHGEGATKNFKEALARYSK 211 (273)
T ss_dssp ----CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 24678899999999 899 99999999999865 2 23678899999999 9999999999999
Q ss_pred HHH
Q psy875 257 LKS 259 (480)
Q Consensus 257 ~~~ 259 (480)
+.+
T Consensus 212 a~~ 214 (273)
T 1ouv_A 212 ACE 214 (273)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 173
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.75 E-value=1.3e-16 Score=162.11 Aligned_cols=211 Identities=14% Similarity=0.112 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh------------------------------ccCchHHHHHHHHHHHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHA------------------------------RNFPEAVKTLGEIGDLY 85 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~------------------------------~~~~~~~~~~~~lg~~y 85 (480)
-..+++.+|.+|...|++++|+++|+++++... ...+....++..+|.+|
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYY 383 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 356677788888888888888888888776510 11233456778889995
Q ss_pred HHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh
Q psy875 86 ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN 165 (480)
Q Consensus 86 ~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~ 165 (480)
... |++++|+.+|++++++.+. ...++..+|.+|...|++++|+++|++++...+. ...++..+|.+|...
T Consensus 384 ~~~-g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 384 LCV-NKISEARRYFSKSSTMDPQ------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG--THLPYLFLGMQHMQL 454 (597)
T ss_dssp HHT-TCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT--CSHHHHHHHHHHHHH
T ss_pred HHh-ccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHc
Confidence 444 9999999999999886432 2457889999999999999999999998876543 346788999999999
Q ss_pred ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHc
Q psy875 166 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL-IRTVMRSMKKLYKKH 244 (480)
Q Consensus 166 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~ 244 (480)
|++++|+++|+++++..+. ...++..+|.++...|+ +++|+.+|+++++.....+..+. ...++..++.++...
T Consensus 455 g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 455 GNILLANEYLQSSYALFQY----DPLLLNELGVVAFNKSD-MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp TCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 9999999999999987433 35679999999999999 99999999999998777554444 478999999999999
Q ss_pred CChHHHHHHHHHHHHH
Q psy875 245 DKFTELEQIKTELKSL 260 (480)
Q Consensus 245 g~~~~A~~~~~~~~~l 260 (480)
|++++|..+++++.++
T Consensus 530 g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLL 545 (597)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999998875
No 174
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.75 E-value=4e-17 Score=145.48 Aligned_cols=199 Identities=15% Similarity=0.163 Sum_probs=149.1
Q ss_pred hhHHHhhccchhhhhhhHHHHhh-hhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHH
Q psy875 3 FKIALSRGIGLSDSLDSACTELH-TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 81 (480)
Q Consensus 3 ~~~~~~~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 81 (480)
...|+.+|.. +...++....+. +.+.....+....++..+|.++...|++++|+.+++++++. .+....++..+
T Consensus 23 ~~~~~~~a~~-~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l 97 (243)
T 2q7f_A 23 SMTGGQQMGR-GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL----DSSAATAYYGA 97 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred HHHHHHHHHH-HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCcchHHHHHH
Confidence 3456666666 334444222211 11111122233678999999999999999999999999998 55667788999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH
Q psy875 82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT 161 (480)
Q Consensus 82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~ 161 (480)
|.+|.. .|++++|+.++++++...+.. ..++..+|.+|...|++++|+.++++++...+. ...++..+|.+
T Consensus 98 a~~~~~-~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 168 (243)
T 2q7f_A 98 GNVYVV-KEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN--DTEARFQFGMC 168 (243)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHH-hccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--cHHHHHHHHHH
Confidence 999554 599999999999999886532 457889999999999999999999999876643 45688999999
Q ss_pred HHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 162 YKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 162 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
|...|++++|+.+++++++.. +....++..+|.++...|+ +++|..++++++++
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQD----PGHADAFYNAGVTYAYKEN-REKALEMLDKAIDI 222 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHccC-HHHHHHHHHHHHcc
Confidence 999999999999999999883 3345689999999999999 99999999999886
No 175
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.75 E-value=1.2e-16 Score=159.97 Aligned_cols=209 Identities=11% Similarity=0.067 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
....+.+++.+|.++...|++++|+.+|+++++. .+. ..++..+|.+ +...|++++|+.++++++...+..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~--- 309 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINL----HPT-PNSYIFLALT-LADKENSQEFFKFFQKAVDLNPEY--- 309 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCC-HHHHHHHHHH-TCCSSCCHHHHHHHHHHHHHCTTC---
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc----CCC-chHHHHHHHH-HHHhcCHHHHHHHHHHHhccCCCC---
Confidence 3445778999999999999999999999999998 455 6788999999 555599999999999999875432
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT 192 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 192 (480)
..++..+|.+|...|++++|+.+|++++...+.. ..++..+|.+|...|++++|+.+++++++..+ ....+
T Consensus 310 ---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~ 380 (537)
T 3fp2_A 310 ---PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN--VYPYIQLACLLYKQGKFTESEAFFNETKLKFP----TLPEV 380 (537)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCTHH
T ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHH
Confidence 5678999999999999999999999999776543 37789999999999999999999999999843 34567
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHH
Q psy875 193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH----------DKFTELEQIKTELKSL 260 (480)
Q Consensus 193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~l 260 (480)
+..+|.++...|+ +++|+.+|+++++..............+..++.++..+ |++++|..+++++.++
T Consensus 381 ~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 381 PTFFAEILTDRGD-FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 8899999999999 99999999999999877666555555667889999999 9999999999999875
No 176
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.74 E-value=9.2e-17 Score=159.82 Aligned_cols=209 Identities=15% Similarity=0.121 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
.+....+++.+|.++...|++++|+.+|+++++. .+. ..++..+|.+| ...|++++|+.++++++...+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~-~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~--- 303 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL----FPR-VNSYIYMALIM-ADRNDSTEYYNYFDKALKLDSNN--- 303 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH----CCC-HHHHHHHHHHH-HTSSCCTTGGGHHHHHHTTCTTC---
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----Ccc-HHHHHHHHHHH-HHCCCHHHHHHHHHHHhhcCcCC---
Confidence 3667889999999999999999999999999998 445 78889999994 55599999999999999875432
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT 192 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 192 (480)
..++..+|.+|...|++++|+.+|++++...+.. ..++..+|.+|...|++++|+.+++++++..+. ...+
T Consensus 304 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~ 374 (514)
T 2gw1_A 304 ---SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN--IFPYIQLACLAYRENKFDDCETLFSEAKRKFPE----APEV 374 (514)
T ss_dssp ---THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC--SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT----CSHH
T ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc----CHHH
Confidence 3478899999999999999999999999776553 468899999999999999999999999988443 3467
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHH
Q psy875 193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK---HDKFTELEQIKTELKSL 260 (480)
Q Consensus 193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~l 260 (480)
+..+|.++...|+ +++|+.++++++..............++..++.++.. .|++++|..+++++..+
T Consensus 375 ~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 375 PNFFAEILTDKND-FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 8999999999999 9999999999999876554433334578899999999 99999999999998875
No 177
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.74 E-value=1.6e-16 Score=156.31 Aligned_cols=174 Identities=12% Similarity=0.070 Sum_probs=151.8
Q ss_pred cCchHHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc
Q psy875 70 NFPEAVKTLGEIGDLYELQEKSF-EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC 148 (480)
Q Consensus 70 ~~~~~~~~~~~lg~~y~~~~~~~-~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~ 148 (480)
..+..+..+..+|.+ +...|+| ++|+.+|++|+++.+. ...++..+|.+|..+|++++|+.+|++++...+.
T Consensus 97 ~~~~~a~~~~~lg~~-~~~~g~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 169 (474)
T 4abn_A 97 SAQVEAQALMLKGKA-LNVTPDYSPEAEVLLSKAVKLEPE------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169 (474)
T ss_dssp TCCCCHHHHHHHHHH-HTSSSSCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred cCchhHHHHHHHHHH-HHhccccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 366678889999999 4555999 9999999999998543 2568899999999999999999999999988765
Q ss_pred ccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh--------CCchHHHH
Q psy875 149 KDLASCYISLAQTYKDN---------KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ--------EKPFELVV 211 (480)
Q Consensus 149 ~~~~~~~~~la~~y~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~A~ 211 (480)
..++.++|.+|..+ |++++|+.+|++++++ .+....++.++|.+|... |+ +++|+
T Consensus 170 ---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~~~~g~-~~~A~ 241 (474)
T 4abn_A 170 ---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----DVLDGRSWYILGNAYLSLYFNTGQNPKI-SQQAL 241 (474)
T ss_dssp ---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHTTCCHHH-HHHHH
T ss_pred ---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHhhccccch-HHHHH
Confidence 48899999999999 9999999999999999 444567899999999999 99 99999
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 212 STHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 212 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
.+|++++++... .+....++..+|.+|..+|++++|..+++++.++.
T Consensus 242 ~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 242 SAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999988210 11567889999999999999999999999998753
No 178
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.73 E-value=5.5e-16 Score=140.84 Aligned_cols=206 Identities=10% Similarity=0.016 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
.+..+.+++.+|.++...|++++|+.+|+++++. .+....++..+|.+|.. .|++++|+.++++++.+.+..
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~--- 110 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTY--- 110 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC---
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCccc---
Confidence 4567889999999999999999999999999999 56667788999999555 599999999999999985432
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT 192 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 192 (480)
..++..+|.+|...|++++|+.+|++++...+..... ...+ .++...|++++|+.++++++...+.+..
T Consensus 111 ---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~----- 179 (275)
T 1xnf_A 111 ---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR--SLWL-YLAEQKLDEKQAKEVLKQHFEKSDKEQW----- 179 (275)
T ss_dssp ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHH-HHHHHHHCHHHHHHHHHHHHHHSCCCST-----
T ss_pred ---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHH--HHHH-HHHHHhcCHHHHHHHHHHHHhcCCcchH-----
Confidence 4678899999999999999999999999877654422 2222 3446779999999999999987554322
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
...++.++...++ +++|+..+++++..... ..+....++..+|.+|..+|++++|..+++++.++
T Consensus 180 ~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 180 GWNIVEFYLGNIS-EQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHTTSSC-HHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHhccccc--ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2347778888888 89999999988765432 12234678899999999999999999999988753
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.8e-15 Score=147.28 Aligned_cols=224 Identities=17% Similarity=0.079 Sum_probs=190.8
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccC--------------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q psy875 40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNF--------------PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDL 105 (480)
Q Consensus 40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~ 105 (480)
....|..+...|+|++|++.|.++++.. ... .....++..+|.+|... |++++|+.++.+++..
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~-~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKD-SSQSSAAAGASVDDKRRNEQETSILELGQLYVTM-GAKDKLREFIPHSTEY 84 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSC-CCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-cccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Confidence 3445677788899999999999999874 111 12335688999996555 9999999999999999
Q ss_pred hhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 106 ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
....++......+...+|.++...|++++|+.++++++..... ...+.++.++|.+|...|+|++|+.++++++..
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 8887777777788899999999999999999999988765433 445789999999999999999999999999988
Q ss_pred hhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875 182 HAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK-LIRTVMRSMKKLYKKHDKFTELEQIKTELK 258 (480)
Q Consensus 182 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 258 (480)
... +.+..+.++..+|.+|...|+ |++|..++++++.+.....+++ .....+..++.++...|++++|..++.++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRN-LAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 655 567888999999999999999 9999999999999988887664 567888899999999999999999999999
Q ss_pred HHHHhhcc
Q psy875 259 SLEEKLDL 266 (480)
Q Consensus 259 ~l~~~~~~ 266 (480)
+.......
T Consensus 244 ~~~~~~~~ 251 (434)
T 4b4t_Q 244 ESYHNLTT 251 (434)
T ss_dssp HHHHHTTT
T ss_pred HHhhhhhh
Confidence 87776554
No 180
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.72 E-value=5.5e-16 Score=136.97 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHH
Q psy875 76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY 155 (480)
Q Consensus 76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (480)
..+..+|.+|+.. |+|++|+.+|++++.+.+.. + ..++.++|.+|..+|++++|+.+|++++... |....++
T Consensus 8 ~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~-~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~ 79 (228)
T 4i17_A 8 NQLKNEGNDALNA-KNYAVAFEKYSEYLKLTNNQ-D----SVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAY 79 (228)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTC-C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHH
T ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHhccCCC-C----cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHH
Confidence 6788999995555 99999999999999986511 1 2567779999999999999999999999766 4566889
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhhhcCc---HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH--H
Q psy875 156 ISLAQTYKDNKQYNLAVDYFNKELRLHARNF---PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL--I 230 (480)
Q Consensus 156 ~~la~~y~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~ 230 (480)
..+|.+|..+|++++|+.++++++++.+.+. ...+.++..+|.++...|+ +++|+.+|++++++ .+. .
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~------~p~~~~ 152 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN-IEKAEENYKHATDV------TSKKWK 152 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTS------SCHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc-HHHHHHHHHHHHhc------CCCccc
Confidence 9999999999999999999999999866543 2245789999999999999 99999999999876 455 6
Q ss_pred HHHHHHHHHHHHHcCCh
Q psy875 231 RTVMRSMKKLYKKHDKF 247 (480)
Q Consensus 231 ~~~~~~l~~~~~~~g~~ 247 (480)
..++..+|.+|..+|+.
T Consensus 153 ~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 153 TDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78899999999998887
No 181
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.1e-16 Score=159.39 Aligned_cols=204 Identities=16% Similarity=0.165 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
..++..+|.++...|++++|+.+++++++. .+....++..+|.+|.. .|++++|+.++++++...+.. .
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~------~ 338 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKL----DSNNSSVYYHRGQMNFI-LQNYDQAGKDFDKAKELDPEN------I 338 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT----CTTCTHHHHHHHHHHHH-TTCTTHHHHHHHHHHHTCSSC------S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc----CcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhChhh------H
Confidence 788999999999999999999999999988 44455678899999555 499999999999999875532 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcH--HHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP--EAVKTLG 194 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~ 194 (480)
.++..+|.+|...|++++|+.+|++++...+.. ..++..+|.+|...|++++|+.+++++++..+.+.. ....++.
T Consensus 339 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPEA--PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 478899999999999999999999998766543 467899999999999999999999999998555321 1134889
Q ss_pred HHHHHHHH---hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 195 EIGDLYEL---QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 195 ~l~~~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
.+|.++.. .|+ +++|+.++++++.. .+....++..++.++...|++++|..+++++.++
T Consensus 417 ~l~~~~~~~~~~~~-~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 417 GKATLLTRNPTVEN-FIEATNLLEKASKL------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHTSCCTTH-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCC-HHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999 999 99999999999987 2334567889999999999999999999999875
No 182
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=4.4e-16 Score=153.42 Aligned_cols=243 Identities=13% Similarity=0.039 Sum_probs=140.5
Q ss_pred hhHHHhhccchhhhhhhHHHH-------hhhhhhh---hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh----h
Q psy875 3 FKIALSRGIGLSDSLDSACTE-------LHTVLSS---DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH----A 68 (480)
Q Consensus 3 ~~~~~~~g~~~~~~l~~~~~~-------~~~~~~~---~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~ 68 (480)
+.+|..+|.+ +...++...+ +.+.... ......+.+|.++|.+|..+|++++|+.++++++++. .
T Consensus 51 a~~yn~Lg~~-~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYL-KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4566667776 5555542222 2222211 1123456789999999999999999999999999985 2
Q ss_pred ccCchHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHH---HHhcCChHHHHHHHHHHhc
Q psy875 69 RNFPEAVKTLGEIGDLYEL-QEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKL---YKKHDNLDSACSELHTVLS 144 (480)
Q Consensus 69 ~~~~~~~~~~~~lg~~y~~-~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~---y~~~~~~~~A~~~~~~~l~ 144 (480)
......+.++.++|.++.. ..++|++|+.+|++|+++.+.. ..++..+|.+ +...+++++|++.|++++.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~------~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN------PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 2234456777888876332 2368999999999999885432 2233334433 2334556666666666665
Q ss_pred ccccccHHHHHHHHHHHH----HhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 145 SDLCKDLASCYISLAQTY----KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 145 ~~~~~~~~~~~~~la~~y----~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
..+.. ..++.++|..+ ...+++++|+.++++++.. .+....++.++|.+|...|+ +++|+..++++++.
T Consensus 204 l~p~~--~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 204 LNPDN--QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----APGVTDVLRSAAKFYRRKDE-PDKAIELLKKALEY 276 (472)
T ss_dssp HCSSC--HHHHHHHHHHHHHCC------CHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred cCCcc--hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHh
Confidence 44332 22333333322 2234444555555555544 22223444455555555555 55555555555432
Q ss_pred HHHcC-----------------------------------------------CcHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy875 221 ARQNK-----------------------------------------------DDKLIRTVMRSMKKLYKKHDKFTELEQI 253 (480)
Q Consensus 221 ~~~~~-----------------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 253 (480)
..... ..+....++..+|.+|..+|++++|..+
T Consensus 277 ~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 356 (472)
T 4g1t_A 277 IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356 (472)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHH
Confidence 11000 0122233456789999999999999999
Q ss_pred HHHHHH
Q psy875 254 KTELKS 259 (480)
Q Consensus 254 ~~~~~~ 259 (480)
++++.+
T Consensus 357 ~~kaL~ 362 (472)
T 4g1t_A 357 FQKEFS 362 (472)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998875
No 183
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=6.5e-16 Score=138.56 Aligned_cols=170 Identities=15% Similarity=0.088 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
....+++.+|.++...|++++|+++++++++. .+....++..+|.+|... |++++|+.++++++. .+..+.
T Consensus 69 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~----~~~~~~ 139 (252)
T 2ho1_A 69 SSADAHAALAVVFQTEMEPKLADEEYRKALAS----DSRNARVLNNYGGFLYEQ-KRYEEAYQRLLEASQ----DTLYPE 139 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTT----CTTCTT
T ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcCcHHHHHHHHHHHHHH-hHHHHHHHHHHHHHh----CccCcc
Confidence 34678999999999999999999999999998 455567889999995554 999999999999987 122344
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
...++..+|.+|...|++++|+.+|++++...+. ...++..+|.+|...|++++|+.+++++++..+ .....+.
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~ 213 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN--QPSVALEMADLLYKEREYVPARQYYDLFAQGGG----QNARSLL 213 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC----CCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CcHHHHH
Confidence 5678899999999999999999999999876643 457889999999999999999999999998733 3356788
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 195 EIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
.++.++...|+ +++|..+++++++.
T Consensus 214 ~~~~~~~~~g~-~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 214 LGIRLAKVFED-RDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC-HHHHHHHHHHHHHH
Confidence 99999999999 99999999999876
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.70 E-value=1.6e-15 Score=125.65 Aligned_cols=154 Identities=15% Similarity=0.162 Sum_probs=137.9
Q ss_pred CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-
Q psy875 110 KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR- 184 (480)
Q Consensus 110 ~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~- 184 (480)
+++...+.++..+|.+|...|++++|+.++++++...+. ...+.++..+|.+|..+|++++|+.++++++++...
T Consensus 3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 456677889999999999999999999999998876543 233578999999999999999999999999998655
Q ss_pred -CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875 185 -NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 185 -~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
+++....++.++|.++...|+ +++|+.++++++.+.+..++......++..++.++..+|++++|..+++++.++..+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 556668899999999999999 999999999999999999998899999999999999999999999999999998766
Q ss_pred h
Q psy875 264 L 264 (480)
Q Consensus 264 ~ 264 (480)
+
T Consensus 162 ~ 162 (164)
T 3ro3_A 162 V 162 (164)
T ss_dssp C
T ss_pred h
Confidence 4
No 185
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.70 E-value=4e-17 Score=161.33 Aligned_cols=129 Identities=22% Similarity=0.127 Sum_probs=102.5
Q ss_pred hhccCCccchhhhccCCCcCCCC------cCCCchHHHHHHh---hCcHHHHHHHHhcCCchhhhhhhhccccCCCcccc
Q psy875 310 TNRKRAPRSHFLIKRNDKDSNLN------LYNIESITISRNR---LGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLL 380 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~---~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 380 (480)
....|+......+...+.++|.. +..+.++||+|+. .|+.++|++|+++|++++..+
T Consensus 139 A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d-------------- 204 (497)
T 3lvq_E 139 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA-------------- 204 (497)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCC--------------
T ss_pred HHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccC--------------
Confidence 34445555555555566777765 7789999999976 999999999999999998764
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460 (480)
Q Consensus 381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A 460 (480)
..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. ||+|.+
T Consensus 205 --~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~--------~~~h~~ 274 (497)
T 3lvq_E 205 --ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA--------FPLHVD 274 (497)
T ss_dssp --SSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred --CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC--------Ccceee
Confidence 3599999999999999999999999999999999999999999999999999999999999883 577765
Q ss_pred HH
Q psy875 461 AN 462 (480)
Q Consensus 461 ~~ 462 (480)
..
T Consensus 275 ~~ 276 (497)
T 3lvq_E 275 YS 276 (497)
T ss_dssp --
T ss_pred cc
Confidence 43
No 186
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=2e-15 Score=138.50 Aligned_cols=201 Identities=15% Similarity=0.087 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
...++..++..+...+++++|++.+++.+.. . ..|.....+..+|.+|.. .|++++|+..+++ ++ .
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~-~-~~P~~~~~~~~la~~~~~-~g~~~~Al~~l~~--------~~---~ 129 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSR-S-VDVTNTTFLLMAASIYFY-DQNPDAALRTLHQ--------GD---S 129 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS-C-CCCSCHHHHHHHHHHHHH-TTCHHHHHHHHTT--------CC---S
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-c-cCCCCHHHHHHHHHHHHH-CCCHHHHHHHHhC--------CC---C
Confidence 4578888999999999999999999988764 1 135556678899999554 4999999999987 11 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 195 (480)
..++..+|.+|..+|++++|+..|++++...+..........+..++...|++++|+..|+++++.. |..+.++.+
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~----p~~~~~~~~ 205 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC----SPTLLLLNG 205 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----CCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC----CCcHHHHHH
Confidence 4578899999999999999999999998876554322222222344456699999999999999883 344678999
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE-LEQIKTELKSLE 261 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~l~ 261 (480)
+|.++..+|+ +++|+..|++++.. .+....++.+++.++..+|++.+ +.++++++.++.
T Consensus 206 la~~~~~~g~-~~eA~~~l~~al~~------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 206 QAACHMAQGR-WEAAEGVLQEALDK------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999 99999999999987 45556678999999999999976 578888887653
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.70 E-value=9.2e-16 Score=127.13 Aligned_cols=151 Identities=20% Similarity=0.243 Sum_probs=103.3
Q ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc---
Q psy875 72 PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC--- 148 (480)
Q Consensus 72 ~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--- 148 (480)
...+.++..+|.+|... |++++|+.++++++.+.+..++....+.++.++|.+|...|++++|+.++++++...+.
T Consensus 6 ~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 34556666777774444 77777777777777776666666666667777777777777777777777766654332
Q ss_pred -ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc
Q psy875 149 -KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQN 224 (480)
Q Consensus 149 -~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~ 224 (480)
+....++.++|.++..+|++++|+.++++++++... +++....++..+|.++...|+ +++|..++++++++.++.
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-HDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHh
Confidence 223556777777777777777777777777776543 345566777777888888887 888888888877766543
No 188
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.69 E-value=6.7e-16 Score=131.05 Aligned_cols=170 Identities=18% Similarity=0.136 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
..+.+++.+|.++...|++++|+.+++++++. .+....++..+|.+|... |++++|+.++++++...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~------ 74 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA----DAFDVDVALHLGIAYVKT-GAVDRGTELLERSLADAPD------ 74 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT----TSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT------
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CccChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC------
Confidence 45678899999999999999999999999877 445567888999995554 9999999999999987432
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
...++..+|.++...|++++|+.++++++...+. ...++..+|.+|...|++++|+.+++++++.. +....++.
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~ 148 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI--NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR----PNEGKVHR 148 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH--hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC----ccchHHHH
Confidence 2467889999999999999999999999876543 45788999999999999999999999999884 33367889
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875 195 EIGDLYELQEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~ 222 (480)
.+|.++...|+ +++|..+++++++...
T Consensus 149 ~la~~~~~~~~-~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 149 AIAFSYEQMGR-HEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHcCC
Confidence 99999999999 9999999999998754
No 189
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.69 E-value=1.1e-16 Score=131.42 Aligned_cols=147 Identities=12% Similarity=0.132 Sum_probs=120.9
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHH
Q psy875 42 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRS 121 (480)
Q Consensus 42 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~ 121 (480)
.||.++..+|++++|+..+++++.. .+.....++.+|.+|+.. |+|++|+.+|++++++.+.. ..++.+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~----~p~~~~~~~~la~~y~~~-~~~~~A~~~~~~al~~~p~~------~~a~~~ 70 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS----PRQKSIKGFYFAKLYYEA-KEYDLAKKYICTYINVQERD------PKAHRF 70 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS----HHHHHTTHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc----CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHH
Confidence 4799999999999999999999777 667777888999996555 99999999999999985432 578899
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHH-HHHHHhhhhcCcHHHHHHHHHHHHHH
Q psy875 122 IKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDY-FNKELRLHARNFPEAVKTLGEIGDLY 200 (480)
Q Consensus 122 l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~-~~~al~~~~~~~~~~~~~~~~l~~~~ 200 (480)
+|.+|..+|++++|+.+|++++...| ....++.++|.+|..+|++++|.++ +++++++ .|..+.++...+.++
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l----~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVELNP--TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL----FPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH----STTCHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh----CcCCHHHHHHHHHHH
Confidence 99999999999999999999997765 4457899999999999999887665 5899999 444456788888888
Q ss_pred HHhCC
Q psy875 201 ELQEK 205 (480)
Q Consensus 201 ~~~~~ 205 (480)
..+|+
T Consensus 145 ~~~G~ 149 (150)
T 4ga2_A 145 DCEGE 149 (150)
T ss_dssp HTCCC
T ss_pred HHhCc
Confidence 88776
No 190
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.69 E-value=4.7e-15 Score=128.12 Aligned_cols=171 Identities=14% Similarity=0.115 Sum_probs=146.9
Q ss_pred hccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccc----cccHHHHHHHHHHHHHh
Q psy875 89 EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL----CKDLASCYISLAQTYKD 164 (480)
Q Consensus 89 ~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~----~~~~~~~~~~la~~y~~ 164 (480)
.|++++|+..++... +++.....++..+|.+|...|++++|+.++++++.... .+..+.++.++|.+|..
T Consensus 5 ~g~~~~A~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 5 AHDYALAERQAQALL------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp --CHHHHHHHHHHHH------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 389999988554332 13445678999999999999999999999999886433 24557889999999999
Q ss_pred hccHHHHHHHHHHHHhhhhc---CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy875 165 NKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLY 241 (480)
Q Consensus 165 ~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 241 (480)
+|++++|+.++++++++... ++...+.++.++|.++..+|+ +++|+.++++++.+.+..++......++..++.++
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 99999999999999998655 233678899999999999999 99999999999999999999888899999999999
Q ss_pred HHcCChHHHHHHHHHHHHHHHhhcc
Q psy875 242 KKHDKFTELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 242 ~~~g~~~~A~~~~~~~~~l~~~~~~ 266 (480)
..+|++++|..+++++.++....+.
T Consensus 158 ~~~g~~~~A~~~~~~al~~~~~~~~ 182 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRARDIFAELED 182 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999998877653
No 191
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.68 E-value=7.2e-15 Score=129.48 Aligned_cols=176 Identities=11% Similarity=0.041 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
+..++.+|..+...|+|++|+..|+++++. .+..+....++..+|.+|+.. |++++|+..|+++++..+... ...
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~P~~~---~~~ 78 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLNPTHP---NID 78 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCT---THH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCcCCC---cHH
Confidence 457899999999999999999999999998 555555667889999996665 999999999999998876543 334
Q ss_pred HHHHHHHHHHHh------------------cCChHHHHHHHHHHhcccccccHH---------------HHHHHHHHHHH
Q psy875 117 TVMRSIKKLYKK------------------HDNLDSACSELHTVLSSDLCKDLA---------------SCYISLAQTYK 163 (480)
Q Consensus 117 ~~~~~l~~~y~~------------------~~~~~~A~~~~~~~l~~~~~~~~~---------------~~~~~la~~y~ 163 (480)
.++..+|.+|.. .|++++|+..|++++...|....+ .....+|.+|.
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~ 158 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT 158 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777765 689999999999999887764322 22357899999
Q ss_pred hhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875 164 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD 219 (480)
Q Consensus 164 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~ 219 (480)
..|++++|+..|+++++..+++ +....++..+|.++..+|+ +++|+..++++..
T Consensus 159 ~~~~~~~A~~~~~~~l~~~p~~-~~~~~a~~~l~~~~~~~g~-~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 159 ERGAWVAVVNRVEGMLRDYPDT-QATRDALPLMENAYRQMQM-NAQAEKVAKIIAA 212 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHCcCC-CccHHHHHHHHHHHHHcCC-cHHHHHHHHHHHh
Confidence 9999999999999999986653 4556889999999999999 9999999987654
No 192
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.67 E-value=1.4e-16 Score=149.70 Aligned_cols=151 Identities=19% Similarity=0.113 Sum_probs=99.4
Q ss_pred CCccchhhhccCCCcCCCCc--CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHH
Q psy875 314 RAPRSHFLIKRNDKDSNLNL--YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHV 391 (480)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 391 (480)
|.......+...+.++|..+ ..+.++||+|+..|+.++|++|+++|++++..+ ..|.||||+
T Consensus 211 g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d----------------~~G~TpLh~ 274 (368)
T 3jue_A 211 PSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD----------------SAGRGPLHH 274 (368)
T ss_dssp CCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHH
T ss_pred CCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCC----------------CCCCCHHHH
Confidence 44444444445667888776 788999999999999999999999999998654 349999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC-ccCCCCCCcHHHHHHHcCC--HHH
Q psy875 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND-KVQDSAGWLPLHEAANHGH--TDI 468 (480)
Q Consensus 392 a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~tpl~~A~~~~~--~~~ 468 (480)
|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+..+..... ...+..+.|+++++..... .+-
T Consensus 275 A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~~~~~ 354 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDD 354 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------------
T ss_pred HHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999999999999999999987633221 1235578899998876543 344
Q ss_pred HHHHHHcCCCCC
Q psy875 469 VQALVSAGAEVS 480 (480)
Q Consensus 469 ~~~Ll~~ga~~~ 480 (480)
.+.|...+.+++
T Consensus 355 ~ekl~r~~~~~~ 366 (368)
T 3jue_A 355 PEKLSRRSHDLH 366 (368)
T ss_dssp ------------
T ss_pred HHHHHhcCCCcC
Confidence 567777776653
No 193
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.67 E-value=3e-16 Score=142.58 Aligned_cols=99 Identities=19% Similarity=0.159 Sum_probs=91.2
Q ss_pred CCcCCCchHHHHHHhh---CcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhc
Q psy875 331 LNLYNIESITISRNRL---GAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ 407 (480)
Q Consensus 331 ~~~~~~~~~~~~a~~~---~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~ 407 (480)
..+..+.++||.|+.. |+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++
T Consensus 164 ~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~----------------~g~TpLh~A~~~g~~~~v~~Ll~~ 227 (278)
T 1dcq_A 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG----------------KGSTALHYCCLTDNAECLKLLLRG 227 (278)
T ss_dssp SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT----------------TCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCC----------------CCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3467789999999999 999999999999999987643 499999999999999999999999
Q ss_pred CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875 408 GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN 445 (480)
Q Consensus 408 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~ 445 (480)
|++++.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus 228 gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 228 KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 265 (278)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999987543
No 194
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.67 E-value=3.5e-15 Score=126.57 Aligned_cols=172 Identities=17% Similarity=0.139 Sum_probs=146.3
Q ss_pred CchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc
Q psy875 71 FPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150 (480)
Q Consensus 71 ~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~ 150 (480)
.......+..+|.+|... |++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+ .
T Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~ 74 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKA-GRYSQAVMLLEQVYDADAFD------VDVALHLGIAYVKTGAVDRGTELLERSLADAP--D 74 (186)
T ss_dssp CCHHHHHHHHHHHHHHHH-TCHHHHHHHHTTTCCTTSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T
T ss_pred cchhhHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCccC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C
Confidence 455677888999995555 99999999999998764322 56788999999999999999999999987654 3
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHH
Q psy875 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLI 230 (480)
Q Consensus 151 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 230 (480)
...++..+|.+|...|++++|+.+++++++.. +....++..+|.++...|+ +++|+.++++++... +..
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~------~~~ 143 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN----PINFNVRFRLGVALDNLGR-FDEAIDSFKIALGLR------PNE 143 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC------TTC
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----cHhHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcC------ccc
Confidence 45788999999999999999999999999983 3345788999999999999 999999999998772 223
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875 231 RTVMRSMKKLYKKHDKFTELEQIKTELKSLEE 262 (480)
Q Consensus 231 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~ 262 (480)
..++..++.++..+|++++|..+++++.++..
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 57888999999999999999999999987653
No 195
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=9.9e-15 Score=128.05 Aligned_cols=173 Identities=13% Similarity=0.099 Sum_probs=147.5
Q ss_pred cCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc
Q psy875 70 NFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK 149 (480)
Q Consensus 70 ~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~ 149 (480)
..+....++..+|.+|... |++++|+.++++++...+.. ..++..+|.+|...|++++|+.+|++++...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~- 74 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRG-QDYRQATASIEDALKSDPKN------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD- 74 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred CCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-
Confidence 3566778899999995555 99999999999999875432 567889999999999999999999999876643
Q ss_pred cHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH
Q psy875 150 DLASCYISLAQTYKDN-KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK 228 (480)
Q Consensus 150 ~~~~~~~~la~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 228 (480)
...++..+|.+|... |++++|+.+++++++ ....+....++..+|.++...|+ +++|+.+++++++.. +
T Consensus 75 -~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~------~ 144 (225)
T 2vq2_A 75 -SAEINNNYGWFLCGRLNRPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQ-FGLAEAYLKRSLAAQ------P 144 (225)
T ss_dssp -CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHS------T
T ss_pred -ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC------C
Confidence 457889999999999 999999999999998 22345567889999999999999 999999999998762 2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 229 LIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
....++..++.++...|++++|..+++++.++
T Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 145 QFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23567889999999999999999999998774
No 196
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.67 E-value=9.7e-15 Score=126.95 Aligned_cols=165 Identities=12% Similarity=0.045 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHH----------------HHHHHHHhhccHHHHHHHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE----------------IGDLYELQEKSFEIVQSTHE 100 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------------lg~~y~~~~~~~~~A~~~~~ 100 (480)
+..++..|..+...|++++|+.+|+++++. .|....++.. +|.+|... |++++|+.+|+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~ 78 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKN-RNYDKAYLFYK 78 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 456788999999999999999999999999 6777777777 99995554 99999999999
Q ss_pred HHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc--HHHHHHHHHHH
Q psy875 101 KALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ--YNLAVDYFNKE 178 (480)
Q Consensus 101 kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~--~~~A~~~~~~a 178 (480)
+++++.+.. ..++.++|.+|..+|++++|+.+|++++...|. ...++.++|.+|..+|+ ...+...++++
T Consensus 79 ~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 79 ELLQKAPNN------VDCLEACAEMQVCRGQEKDALRMYEKILQLEAD--NLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp HHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999985432 567899999999999999999999999987754 45789999999987764 45566777666
Q ss_pred HhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 179 LRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 179 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
+.. . .....++.+|.++...|+ |++|+.+|++++++
T Consensus 151 ~~~----~-~~~~a~~~~g~~~~~~~~-~~~A~~~~~~al~l 186 (208)
T 3urz_A 151 SSP----T-KMQYARYRDGLSKLFTTR-YEKARNSLQKVILR 186 (208)
T ss_dssp -CC----C-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHTTT
T ss_pred hCC----C-chhHHHHHHHHHHHHccC-HHHHHHHHHHHHHh
Confidence 532 2 233467788999999999 99999999999876
No 197
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.66 E-value=8.1e-15 Score=132.33 Aligned_cols=181 Identities=13% Similarity=0.097 Sum_probs=150.6
Q ss_pred CchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-c
Q psy875 71 FPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-K 149 (480)
Q Consensus 71 ~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~ 149 (480)
.+.....++.+|..++.. |+|++|+..|++++...+. .+....++..+|.+|..+|++++|+.+|++++...|. +
T Consensus 11 ~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQ-GKYDRAIEYFKAVFTYGRT---HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp CCSSHHHHHHHHHHHHHT-TCHHHHHHHHHHHGGGCSC---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 345567788999995555 9999999999999987543 3445678999999999999999999999999988774 4
Q ss_pred cHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHhhhhcCcHHHHHH--------------HHHHHHHHHHhCCch
Q psy875 150 DLASCYISLAQTYKD--------NKQYNLAVDYFNKELRLHARNFPEAVKT--------------LGEIGDLYELQEKPF 207 (480)
Q Consensus 150 ~~~~~~~~la~~y~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~ 207 (480)
....+++.+|.+|.. +|++++|+.+|+++++..+++. ....+ ++.+|.+|...|+ |
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-~ 164 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE-LVDDATQKIRELRAKLARKQYEAARLYERREL-Y 164 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-H
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-H
Confidence 567899999999999 9999999999999999866532 22233 3889999999999 9
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHH
Q psy875 208 ELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH----------DKFTELEQIKTELKSL 260 (480)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~l 260 (480)
++|+..|+++++.. ++.+....++..++.+|..+ |++++|...++++.+.
T Consensus 165 ~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 165 EAAAVTYEAVFDAY---PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHC---TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 99999999998763 33444677889999999977 8999999999988764
No 198
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=4.5e-16 Score=120.29 Aligned_cols=90 Identities=27% Similarity=0.381 Sum_probs=81.6
Q ss_pred CcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC
Q psy875 332 NLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPV 411 (480)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~ 411 (480)
.+..+.++++.|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|+++
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d----------------~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~ 83 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKD----------------KNGSTPLHLAARNGHLEVVKLLLEAGADV 83 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------------TTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccC----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 34567788999999999999999999999988654 34999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHH
Q psy875 412 KVQDSAGWLPLHEAANHGHTDIVQAL 437 (480)
Q Consensus 412 ~~~~~~g~t~l~~a~~~~~~~~~~~L 437 (480)
+.+|..|+||||+|+..|+.+++++|
T Consensus 84 ~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 84 XAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred cccccCCCcHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999999986
No 199
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.65 E-value=5.6e-16 Score=127.15 Aligned_cols=147 Identities=14% Similarity=0.095 Sum_probs=119.2
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHH
Q psy875 80 EIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA 159 (480)
Q Consensus 80 ~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la 159 (480)
.||.+ +...|++++|+..+++++.. .+.....+..+|.+|..+|+|++|+.+|++++...| ....++.++|
T Consensus 2 ~LG~~-~~~~~~~e~ai~~~~~a~~~------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg 72 (150)
T 4ga2_A 2 PLGSM-RRSKADVERYIASVQGSTPS------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--RDPKAHRFLG 72 (150)
T ss_dssp ------CCCHHHHHHHHHHHHHHSCS------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HhHHH-HHHcChHHHHHHHHHHhccc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 46888 44559999999999998865 334456778999999999999999999999998775 4458899999
Q ss_pred HHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHH
Q psy875 160 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVST-HEKALDLARQNKDDKLIRTVMRSMK 238 (480)
Q Consensus 160 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~-~~~al~~~~~~~~~~~~~~~~~~l~ 238 (480)
.+|..+|++++|+.+|++++++ .|....++.++|.++...|+ +++|... +++|+++ .|....++..++
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~-~~~aa~~~~~~al~l------~P~~~~~~~l~~ 141 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVEL----NPTQKDLVLKIAELLCKNDV-TDGRAKYWVERAAKL------FPGSPAVYKLKE 141 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHH------STTCHHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHh------CcCCHHHHHHHH
Confidence 9999999999999999999999 45557789999999999999 9877665 6899987 344456777888
Q ss_pred HHHHHcCC
Q psy875 239 KLYKKHDK 246 (480)
Q Consensus 239 ~~~~~~g~ 246 (480)
.++..+|+
T Consensus 142 ~ll~~~G~ 149 (150)
T 4ga2_A 142 QLLDCEGE 149 (150)
T ss_dssp HHHHTCCC
T ss_pred HHHHHhCc
Confidence 88888875
No 200
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.65 E-value=1.4e-15 Score=156.28 Aligned_cols=196 Identities=10% Similarity=-0.050 Sum_probs=157.2
Q ss_pred hccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHH
Q psy875 48 KDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIK 123 (480)
Q Consensus 48 ~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~ 123 (480)
...|++++|++.++++++.. ....+....++..+|.+|.. .|++++|+..|+++++..+.. ..++.++|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~------~~a~~~lg 474 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD-LGDVAKATRKLDDLAERVGWR------WRLVWYRA 474 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHCCC------HHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHhccCcch------HHHHHHHH
Confidence 67899999999999999210 11256667788999999544 599999999999999886533 56889999
Q ss_pred HHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh
Q psy875 124 KLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ 203 (480)
Q Consensus 124 ~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~ 203 (480)
.+|..+|++++|+..|++++...+.. ..++.++|.+|..+|++++ +.+|++++++ .+....+++++|.++..+
T Consensus 475 ~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~lg~~~~~~g~~~~-~~~~~~al~~----~P~~~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 475 VAELLTGDYDSATKHFTEVLDTFPGE--LAPKLALAATAELAGNTDE-HKFYQTVWST----NDGVISAAFGLARARSAE 547 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH----CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCChHH-HHHHHHHHHh----CCchHHHHHHHHHHHHHc
Confidence 99999999999999999999877654 4788999999999999999 9999999998 455567899999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHhh
Q psy875 204 EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTEL-EQIKTELKSLEEKL 264 (480)
Q Consensus 204 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~l~~~~ 264 (480)
|+ +++|+..|++++++ .+....++..++.++...++.+++ ..-++++.+.-..+
T Consensus 548 g~-~~~A~~~~~~al~l------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 548 GD-RVGAVRTLDEVPPT------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp TC-HHHHHHHHHTSCTT------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred CC-HHHHHHHHHhhccc------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 99 99999999999876 556678889999999887776665 55566665544444
No 201
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.63 E-value=1e-13 Score=122.07 Aligned_cols=177 Identities=13% Similarity=0.073 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc-HHH
Q psy875 75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-LAS 153 (480)
Q Consensus 75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-~~~ 153 (480)
...++.+|..++.. |+|++|+..|++++...+. .+....++..+|.+|..+|++++|+..|++++...|... ...
T Consensus 4 ~~~~~~~a~~~~~~-g~~~~A~~~~~~~~~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 4 PNEIYATAQQKLQD-GNWRQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH
Confidence 34577889995555 9999999999999987553 333456889999999999999999999999998877643 456
Q ss_pred HHHHHHHHHHh------------------hccHHHHHHHHHHHHhhhhcCcHH-------------HHHHHHHHHHHHHH
Q psy875 154 CYISLAQTYKD------------------NKQYNLAVDYFNKELRLHARNFPE-------------AVKTLGEIGDLYEL 202 (480)
Q Consensus 154 ~~~~la~~y~~------------------~~~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~l~~~~~~ 202 (480)
+++.+|.+|.. .|++++|+..|+++++..++.... .......+|.+|+.
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888988875 689999999999999986653211 11233678999999
Q ss_pred hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 203 QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 203 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
.|+ +++|+..|+++++.. ++.+....++..++.+|.++|++++|..+++.+..
T Consensus 160 ~~~-~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 160 RGA-WVAVVNRVEGMLRDY---PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HTC-HHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCc-HHHHHHHHHHHHHHC---cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 999 999999999998763 44566678999999999999999999999986654
No 202
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=6.2e-15 Score=133.80 Aligned_cols=226 Identities=10% Similarity=0.001 Sum_probs=161.9
Q ss_pred hhHHHhhccchhhhhhhHHHHhhh-hhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHH
Q psy875 3 FKIALSRGIGLSDSLDSACTELHT-VLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 81 (480)
Q Consensus 3 ~~~~~~~g~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 81 (480)
..+++.+|.. +...++....+.. .+.....+....++..+|.++...|++++|+.+|++++++ .+....++..+
T Consensus 43 ~~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~l 117 (275)
T 1xnf_A 43 AQLLYERGVL-YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAHLNR 117 (275)
T ss_dssp HHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTHHHHHH
T ss_pred HHHHHHHHHH-HHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CccccHHHHHH
Confidence 3456666666 4444442222111 1111222334678999999999999999999999999999 55556788999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH
Q psy875 82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT 161 (480)
Q Consensus 82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~ 161 (480)
|.+|.. .|++++|+.++++++.+.+... .....+ .++...|++++|+.++++++...+.... ...++.+
T Consensus 118 a~~~~~-~g~~~~A~~~~~~a~~~~~~~~------~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~ 186 (275)
T 1xnf_A 118 GIALYY-GGRDKLAQDDLLAFYQDDPNDP------FRSLWL-YLAEQKLDEKQAKEVLKQHFEKSDKEQW---GWNIVEF 186 (275)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHCTTCH------HHHHHH-HHHHHHHCHHHHHHHHHHHHHHSCCCST---HHHHHHH
T ss_pred HHHHHH-hccHHHHHHHHHHHHHhCCCCh------HHHHHH-HHHHHhcCHHHHHHHHHHHHhcCCcchH---HHHHHHH
Confidence 999555 5999999999999998755331 111222 3346679999999999988876654432 2458888
Q ss_pred HHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy875 162 YKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLY 241 (480)
Q Consensus 162 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 241 (480)
+...+++++|+..++++++......+....++..+|.++...|+ +++|+.+|++++.+. ..+. ...+.++
T Consensus 187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~--p~~~-------~~~~~~~ 256 (275)
T 1xnf_A 187 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD-LDSATALFKLAVANN--VHNF-------VEHRYAL 256 (275)
T ss_dssp HTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTC--CTTC-------HHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCC--chhH-------HHHHHHH
Confidence 89999999999999999887554444557899999999999999 999999999998762 1121 2235677
Q ss_pred HHcCChHHHHHHH
Q psy875 242 KKHDKFTELEQIK 254 (480)
Q Consensus 242 ~~~g~~~~A~~~~ 254 (480)
..+|++++|+..+
T Consensus 257 ~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 257 LELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHhhHHHH
Confidence 7888888887766
No 203
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.60 E-value=3.9e-14 Score=123.09 Aligned_cols=165 Identities=12% Similarity=0.027 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHH----------------HHHHHHhcCChHHHHHHH
Q psy875 76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRS----------------IKKLYKKHDNLDSACSEL 139 (480)
Q Consensus 76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~----------------l~~~y~~~~~~~~A~~~~ 139 (480)
..+...|..+. ..|++++|+.+|++++.+.+. ...++.. +|.+|..+|++++|+.+|
T Consensus 5 ~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 77 (208)
T 3urz_A 5 DEMLQKVSAAI-EAGQNGQAVSYFRQTIALNID------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY 77 (208)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCHH------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44567788844 459999999999999987442 2345555 999999999999999999
Q ss_pred HHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHH
Q psy875 140 HTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK-PFELVVSTHEKAL 218 (480)
Q Consensus 140 ~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~A~~~~~~al 218 (480)
++++...|. ...++.++|.+|...|++++|+.+|++++++ .|....++.++|.+|+..|+ ..+.+...+++++
T Consensus 78 ~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 78 KELLQKAPN--NVDCLEACAEMQVCRGQEKDALRMYEKILQL----EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp HHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 999987754 4588999999999999999999999999999 45557889999999987765 0344555555543
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 219 DLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
.+.....++..+|.++...|++++|..++++++++
T Consensus 152 -------~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 152 -------SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred -------CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 22233446677899999999999999999998764
No 204
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.4e-13 Score=133.76 Aligned_cols=193 Identities=9% Similarity=0.034 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh--ccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA--RNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK 110 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~ 110 (480)
.+....++..+|.+|...|++++|++++.+++++.. +.......+...+|.+ +...|++++|+.++++++.+.....
T Consensus 51 ~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (434)
T 4b4t_Q 51 RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKF-EQVPDSLDDQIFVCEKSIEFAKREK 129 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHH-CSCCSCHHHHHHHHHHHHHHHHHSS
T ss_pred hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHhC
Confidence 345567899999999999999999999999999851 1222234566778888 5555999999999999999999888
Q ss_pred CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc----ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--
Q psy875 111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD----LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-- 184 (480)
Q Consensus 111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-- 184 (480)
+....+.++.++|.+|...|+|++|+.++++++... ..+....++..+|.+|..+|+|++|..++++++.+...
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 209 (434)
T 4b4t_Q 130 RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY 209 (434)
T ss_dssp CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence 888888999999999999999999999999876432 23566889999999999999999999999999988654
Q ss_pred -CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCc
Q psy875 185 -NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDD 227 (480)
Q Consensus 185 -~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 227 (480)
.+...+..+..+|.++...++ |++|..+|.++++........
T Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~-y~~A~~~~~~a~~~~~~~~~~ 252 (434)
T 4b4t_Q 210 CPTQTVAELDLMSGILHCEDKD-YKTAFSYFFESFESYHNLTTH 252 (434)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHTTTS
T ss_pred CchHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHhhhhhhh
Confidence 234567888999999999999 999999999999988776543
No 205
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.59 E-value=4.8e-14 Score=111.86 Aligned_cols=115 Identities=24% Similarity=0.292 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC-
Q psy875 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK- 110 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~- 110 (480)
...+.+.++.++|..++.+|+|++|+++|++|+++ .|....+|.++|.+|.. +|+|++|+.++++|+++.+...
T Consensus 3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~----~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----DPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccch
Confidence 34567889999999999999999999999999999 67778899999999555 5999999999999999887654
Q ss_pred CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH
Q psy875 111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151 (480)
Q Consensus 111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~ 151 (480)
.....+.++.++|.+|..+|++++|+++|++++...+++..
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence 34667889999999999999999999999999987665543
No 206
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=7.7e-14 Score=129.19 Aligned_cols=210 Identities=10% Similarity=0.084 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHHHhc-------cccH-------HHHHHHHHHHHH-HhhccCchHHHHHHHHHHHHHHhhccHHHHHH
Q psy875 33 CKDLASCYISLAQTYKD-------NKQY-------NLAVDYFNKELR-LHARNFPEAVKTLGEIGDLYELQEKSFEIVQS 97 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~-------~~~~-------~~A~~~~~~al~-~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~ 97 (480)
.+....+++.+|.++.. .|++ ++|+..|++|++ + .+....+|..+|.+ +...|++++|+.
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~----~p~~~~~~~~~~~~-~~~~~~~~~A~~ 120 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL----LKKNMLLYFAYADY-EESRMKYEKVHS 120 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT----TTTCHHHHHHHHHH-HHHTTCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh----CcccHHHHHHHHHH-HHhcCCHHHHHH
Confidence 34456677888877763 4665 999999999998 6 55666788999999 555599999999
Q ss_pred HHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHH-hhccHHHHHHHHH
Q psy875 98 THEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYK-DNKQYNLAVDYFN 176 (480)
Q Consensus 98 ~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~-~~~~~~~A~~~~~ 176 (480)
.|++++++.+.. .. .++.++|.++...|++++|...|++++...+.. ..++...+.+.. ..|++++|+..|+
T Consensus 121 ~~~~al~~~p~~---~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~~~~~~~A~~~~~ 193 (308)
T 2ond_A 121 IYNRLLAIEDID---PT--LVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFE 193 (308)
T ss_dssp HHHHHHTSSSSC---TH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--THHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHhccccC---cc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999864322 11 278899999999999999999999999876543 345555555543 3799999999999
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875 177 KELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTE 256 (480)
Q Consensus 177 ~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 256 (480)
++++..+ ....++..+|.++...|+ +++|...|++++.... -.+.....++..++.+....|++++|...+++
T Consensus 194 ~al~~~p----~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~~--l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 194 LGLKKYG----DIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHSSS--SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHhCC----CcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999844 346788999999999999 9999999999986410 01112456777888999999999999999998
Q ss_pred HHHHH
Q psy875 257 LKSLE 261 (480)
Q Consensus 257 ~~~l~ 261 (480)
+.++.
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88754
No 207
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.58 E-value=9.2e-14 Score=121.07 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHhhhcCCC
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK----SFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~----~~~~A~~~~~kAl~~~~~~~~ 111 (480)
.+.+++.+|.+|...+++++|+.+|+++.+. ....+++++|.+| .. + ++++|+.+|++|.+..
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g~~~a~~~lg~~y-~~-~g~~~~~~~A~~~~~~A~~~g----- 83 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------GDGDALALLAQLK-IR-NPQQADYPQARQLAEKAVEAG----- 83 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCHHHHHHHHHHT-TS-STTSCCHHHHHHHHHHHHHTT-----
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHH-Hc-CCCCCCHHHHHHHHHHHHHCC-----
Confidence 3578999999999999999999999999876 3456788999994 45 6 8999999999996531
Q ss_pred chHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHHhhhh
Q psy875 112 DKLIRTVMRSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELRLHA 183 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~~~ 183 (480)
...++.++|.+|.. .+++++|+.+|+++....+......++++||.+|.. .+++++|+.+|+++.+. .
T Consensus 84 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~ 159 (212)
T 3rjv_A 84 ---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-S 159 (212)
T ss_dssp ---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-S
T ss_pred ---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C
Confidence 25678899999998 899999999999999766533457889999999999 89999999999999887 2
Q ss_pred cCcHHHHHHHHHHHHHHHHh-C-----CchHHHHHHHHHHHHH
Q psy875 184 RNFPEAVKTLGEIGDLYELQ-E-----KPFELVVSTHEKALDL 220 (480)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~-~-----~~~~~A~~~~~~al~~ 220 (480)
.+ ..++++||.+|... | + +++|+.+|++|.+.
T Consensus 160 ~~----~~a~~~Lg~~y~~g~gg~~~~d-~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 160 RT----GYAEYWAGMMFQQGEKGFIEPN-KQKALHWLNVSCLE 197 (212)
T ss_dssp CT----THHHHHHHHHHHHCBTTTBCCC-HHHHHHHHHHHHHH
T ss_pred CC----HHHHHHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHHc
Confidence 22 23788999999874 2 6 99999999999876
No 208
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.57 E-value=1.7e-13 Score=119.33 Aligned_cols=178 Identities=10% Similarity=0.021 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC---
Q psy875 54 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD--- 130 (480)
Q Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~--- 130 (480)
.+|+++|+++.+. ....+++.+|.+|... +++++|+.+|++|.+.. ...++.++|.+|.. +
T Consensus 3 ~eA~~~~~~aa~~------g~~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~~g--------~~~a~~~lg~~y~~-~g~~ 66 (212)
T 3rjv_A 3 TEPGSQYQQQAEA------GDRRAQYYLADTWVSS-GDYQKAEYWAQKAAAQG--------DGDALALLAQLKIR-NPQQ 66 (212)
T ss_dssp -CTTHHHHHHHHT------TCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--------CHHHHHHHHHHTTS-STTS
T ss_pred chHHHHHHHHHHC------CCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHc-CCCC
Confidence 4578889988875 3466788999996665 99999999999998642 25678899999998 7
Q ss_pred -ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHH---
Q psy875 131 -NLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL--- 202 (480)
Q Consensus 131 -~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~--- 202 (480)
++++|+.+|+++... ....++++||.+|.. .+++++|+.+|+++.+.- +....+.++++||.+|..
T Consensus 67 ~~~~~A~~~~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g 140 (212)
T 3rjv_A 67 ADYPQARQLAEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVH 140 (212)
T ss_dssp CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCC
Confidence 999999999999643 345789999999998 899999999999998761 111457899999999999
Q ss_pred -hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHHH
Q psy875 203 -QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH-D-----KFTELEQIKTELKSLE 261 (480)
Q Consensus 203 -~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~l~ 261 (480)
.++ +++|+.+|+++.+. .++. .++..|+.+|... | ++++|..+++++.+..
T Consensus 141 ~~~d-~~~A~~~~~~A~~~---~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 141 GPED-DVKASEYFKGSSSL---SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSCC-HHHHHHHHHHHHHT---SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCC-HHHHHHHHHHHHHc---CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 888 99999999999765 1222 3678999999864 3 8999999999998764
No 209
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.55 E-value=4.1e-13 Score=123.01 Aligned_cols=198 Identities=12% Similarity=0.088 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
....+...++.+|...|+++.|+..++. ..+....++..++.. +...+++++|+..+++.+..... ++
T Consensus 32 ~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~la~~-~~~~~~~~~A~~~l~~ll~~~~~-P~--- 99 (291)
T 3mkr_A 32 RDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMFAEY-LASHSRRDAIVAELDREMSRSVD-VT--- 99 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHHHHH-HHCSTTHHHHHHHHHHHHHSCCC-CS---
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHHHHH-HcCCCcHHHHHHHHHHHHhcccC-CC---
Confidence 3345677889999999999999986644 133456777888888 55559999999999998754211 11
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
...++..+|.+|...|++++|+..|++ +....++..+|.+|..+|++++|+..++++++..+... ......
T Consensus 100 ~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~--~~~l~~ 170 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT--LTQLAT 170 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH--HHHHHH
Confidence 245678999999999999999999988 34457889999999999999999999999998843321 111111
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 195 EIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
.+..++...|+ +++|+..|+++++. .+....++..+|.++..+|++++|...++++.++
T Consensus 171 a~~~l~~~~~~-~~eA~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 171 AWVSLAAGGEK-LQDAYYIFQEMADK------CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHCTTH-HHHHHHHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchH-HHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11223334588 99999999999876 2234568889999999999999999999999874
No 210
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.55 E-value=6.2e-13 Score=131.58 Aligned_cols=189 Identities=9% Similarity=0.060 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhc----cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHhhhcC
Q psy875 37 ASCYISLAQTYKD----NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ---EKSFEIVQSTHEKALDLARQN 109 (480)
Q Consensus 37 ~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~~A~~~~~kAl~~~~~~ 109 (480)
+.+++.||.+|.. .+++++|+++|+++.+. ....++..+|.+|... .+++++|+.+|++|.+..
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 145 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--- 145 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3456666666666 66666666666666544 1234455566664431 256666666666665431
Q ss_pred CCchHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHHhh
Q psy875 110 KDDKLIRTVMRSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELRL 181 (480)
Q Consensus 110 ~~~~~~~~~~~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~ 181 (480)
...++.++|.+|.. .+++++|+.+|+++.... ...++..+|.+|.. .+++++|+.+|+++.+.
T Consensus 146 -----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 146 -----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp -----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred -----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence 13455666666665 566666666666665431 23556666666666 66666666666666553
Q ss_pred hhcCcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCChHHHHHH
Q psy875 182 HARNFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK----HDKFTELEQI 253 (480)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 253 (480)
....++..+|.+|.. .++ +++|+.+|+++.+. + ...+...++.+|.. .+++++|..+
T Consensus 217 ------~~~~a~~~lg~~y~~g~g~~~~-~~~A~~~~~~a~~~----~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 217 ------GDELGQLHLADMYYFGIGVTQD-YTQSRVLFSQSAEQ----G----NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp ------TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHTT----T----CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHC----C----CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 113456666666665 555 66666666666542 1 12355667777776 6777777777
Q ss_pred HHHHH
Q psy875 254 KTELK 258 (480)
Q Consensus 254 ~~~~~ 258 (480)
++++.
T Consensus 282 ~~~a~ 286 (490)
T 2xm6_A 282 YRKSA 286 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 211
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.54 E-value=9.7e-14 Score=109.87 Aligned_cols=116 Identities=14% Similarity=0.119 Sum_probs=99.7
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 191 (480)
.|..+.++.++|..|...|+|++|+.+|++++...| ....++.++|.+|..+|++++|+..|++++++ .+....
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~ 82 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRL----DSKFIK 82 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----hhhhhH
Confidence 467788999999999999999999999999997764 44688999999999999999999999999999 455578
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKL 240 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 240 (480)
++.++|.++..+|+ +++|+..|++++++ .|....+...|+.+
T Consensus 83 a~~~lg~~~~~~~~-~~~A~~~~~~al~l------~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMRE-WSKAQRAYEDALQV------DPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHH------CcCCHHHHHHHHHh
Confidence 89999999999999 99999999999988 33334455555543
No 212
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.54 E-value=8.8e-14 Score=110.12 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
+..+.++.++|..|+..|+|++|+++|++++++ .|....++.++|.+| ..+|++++|+..+++|+++.+.
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~----- 79 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----DPENAILYSNRAACL-TKLMEFQRALDDCDTCIRLDSK----- 79 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHhhHH-HhhccHHHHHHHHHHHHHhhhh-----
Confidence 344555555555555555555555555555555 344444555555553 2225555555555555554221
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD 146 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~ 146 (480)
...++.++|.+|..+|++++|+.+|++++...
T Consensus 80 -~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 80 -FIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 13344555555555555555555555555444
No 213
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.52 E-value=1.3e-12 Score=129.16 Aligned_cols=191 Identities=13% Similarity=0.163 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHhhhc
Q psy875 36 LASCYISLAQTYKD----NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ---EKSFEIVQSTHEKALDLARQ 108 (480)
Q Consensus 36 ~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~~A~~~~~kAl~~~~~ 108 (480)
-+.+++.+|.+|.. .+++++|+.+|+++.+. ....+++.+|.+|... .+++++|+.+|++|.+..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 36789999999998 89999999999999876 2356788999996650 489999999999998641
Q ss_pred CCCchHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHHh
Q psy875 109 NKDDKLIRTVMRSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELR 180 (480)
Q Consensus 109 ~~~~~~~~~~~~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~ 180 (480)
...++.++|.+|.. .+++++|+.+|+++.... ...++.+||.+|.. .+++++|+++|+++.+
T Consensus 110 ------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 110 ------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp ------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 24677899999999 899999999999987542 35789999999998 8999999999999987
Q ss_pred hhhcCcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCChHHHHH
Q psy875 181 LHARNFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK----HDKFTELEQ 252 (480)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 252 (480)
. ..+.++..+|.+|.. .++ +++|+.+|+++.+. ++ ..+...++.+|.. .+++++|..
T Consensus 180 ~------~~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 180 Q------GNVWSCNQLGYMYSRGLGVERN-DAISAQWYRKSATS----GD----ELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp T------TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred C------CCHHHHHHHHHHHhcCCCCCcC-HHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 5 125788999999998 888 99999999999764 22 3577889999997 899999999
Q ss_pred HHHHHHH
Q psy875 253 IKTELKS 259 (480)
Q Consensus 253 ~~~~~~~ 259 (480)
+++++.+
T Consensus 245 ~~~~a~~ 251 (490)
T 2xm6_A 245 LFSQSAE 251 (490)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9998865
No 214
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=1.2e-12 Score=121.06 Aligned_cols=184 Identities=8% Similarity=0.015 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHH------hhccH-------HHHHHHHHHHHH-hhhcCCCchHHHHHH
Q psy875 54 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL------QEKSF-------EIVQSTHEKALD-LARQNKDDKLIRTVM 119 (480)
Q Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~------~~~~~-------~~A~~~~~kAl~-~~~~~~~~~~~~~~~ 119 (480)
++|+..|++++.. .+....+|..+|.++.. ..|++ ++|+..|++|+. +.+. ...++
T Consensus 33 ~~a~~~~~~al~~----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~------~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK------NMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT------CHHHH
T ss_pred HHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc------cHHHH
Confidence 7899999999998 56667778888888432 24775 999999999998 5332 24578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q psy875 120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL 199 (480)
Q Consensus 120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 199 (480)
..+|.++...|++++|...|++++...+... ..++.++|.++...|++++|+..|+++++..+.. ...+...+.+
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~a~~ 177 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR----HHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC----THHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccccCc-cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHH
Confidence 8999999999999999999999998765432 1378999999999999999999999999874432 3445555555
Q ss_pred HHH-hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 200 YEL-QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 200 ~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
... .|+ +++|...|+++++... ....++..++.++..+|++++|...++++..
T Consensus 178 ~~~~~~~-~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 178 EYYCSKD-KSVAFKIFELGLKKYG------DIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHTSCC-HHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCC-HHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 443 688 9999999999998742 2356778899999999999999999999876
No 215
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.50 E-value=5.5e-14 Score=131.67 Aligned_cols=159 Identities=12% Similarity=0.065 Sum_probs=130.9
Q ss_pred ccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC---------chHHHHHH
Q psy875 49 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD---------DKLIRTVM 119 (480)
Q Consensus 49 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~---------~~~~~~~~ 119 (480)
..+++++|+..|+++++. .+..+.++..+|.+|+.. |+|++|+.+|++|+.+.+.... .+....++
T Consensus 125 ~L~~~~~A~~~~~~a~~~----~p~~a~~~~~~g~~~~~~-g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE----KLEQSTIVKERGTVYFKE-GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp EEEEEECCCCGGGCCHHH----HHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH----HHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence 457778888888887776 667778888999995555 9999999999999988765431 23346789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q psy875 120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL 199 (480)
Q Consensus 120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 199 (480)
.++|.+|..+|++++|+.+|++++...+ ....+++++|.+|..+|++++|+.+|++++++. |....++..+|.+
T Consensus 200 ~nla~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 200 LNLAMCHLKLQAFSAAIESCNKALELDS--NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY----PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
Confidence 9999999999999999999999998764 456889999999999999999999999999994 3445688999999
Q ss_pred HHHhCCchHHH-HHHHHHHHH
Q psy875 200 YELQEKPFELV-VSTHEKALD 219 (480)
Q Consensus 200 ~~~~~~~~~~A-~~~~~~al~ 219 (480)
+..+|+ +++| ...|++.+.
T Consensus 274 ~~~~~~-~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 274 QQRIRR-QLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHH
Confidence 999999 9888 446666554
No 216
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.50 E-value=3.9e-13 Score=106.60 Aligned_cols=105 Identities=14% Similarity=0.258 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---CcHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEA 189 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~~~~ 189 (480)
...+.++.++|..+...|+|++|+.+|++++...| ..+.++.++|.+|..+|+|++|+.++++++++.+. .....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 34567889999999999999999999999998765 44678999999999999999999999999998655 34556
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
+.++.++|.++..+|+ +++|+++|++++..
T Consensus 83 a~~~~~lg~~~~~~~~-~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQND-LSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence 7899999999999999 99999999999875
No 217
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.50 E-value=3.1e-13 Score=136.37 Aligned_cols=155 Identities=10% Similarity=0.042 Sum_probs=118.2
Q ss_pred cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc
Q psy875 50 NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH 129 (480)
Q Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~ 129 (480)
.|++++|+.+|+++++. .+....++..+|.+|... |++++|+.+|++++++.+.. ..++.++|.+|..+
T Consensus 2 ~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH----RPQDFVAWLMLADAELGM-GDTTAGEMAVQRGLALHPGH------PEAVARLGRVRWTQ 70 (568)
T ss_dssp -----------------------CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTSTTC------HHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC
Confidence 47899999999999998 566677899999995555 99999999999999875432 56789999999999
Q ss_pred CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh---CCc
Q psy875 130 DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ---EKP 206 (480)
Q Consensus 130 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 206 (480)
|++++|+.+|++++...+. ...++.++|.+|..+|++++|+++|++++++. +....++.++|.++..+ |+
T Consensus 71 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~g~- 143 (568)
T 2vsy_A 71 QRHAEAAVLLQQASDAAPE--HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----PEEPYITAQLLNWRRRLCDWRA- 143 (568)
T ss_dssp TCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCTT-
T ss_pred CCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhhcccc-
Confidence 9999999999999977644 46789999999999999999999999999983 44467889999999999 99
Q ss_pred hHHHHHHHHHHHHHHH
Q psy875 207 FELVVSTHEKALDLAR 222 (480)
Q Consensus 207 ~~~A~~~~~~al~~~~ 222 (480)
+++|...++++++...
T Consensus 144 ~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999988743
No 218
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.50 E-value=9.5e-14 Score=142.64 Aligned_cols=171 Identities=10% Similarity=-0.080 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL 114 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~ 114 (480)
....+++.+|.++...|++++|+..|+++++. .+....+++++|.+|.. .|++++|+..|++|+++.+..
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~----- 500 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAER----VGWRWRLVWYRAVAELL-TGDYDSATKHFTEVLDTFPGE----- 500 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTC-----
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC-----
Confidence 34578999999999999999999999999999 56667889999999555 599999999999999986543
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
..++.++|.+|..+|++++ +.+|++++...+ ....+++++|.+|..+|++++|+.+|++++++ .+....++.
T Consensus 501 -~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----~P~~~~a~~ 572 (681)
T 2pzi_A 501 -LAPKLALAATAELAGNTDE-HKFYQTVWSTND--GVISAAFGLARARSAEGDRVGAVRTLDEVPPT----SRHFTTARL 572 (681)
T ss_dssp -SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT----STTHHHHHH
T ss_pred -hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC--chHHHHHHHHHHHHHcCCHHHHHHHHHhhccc----CcccHHHHH
Confidence 4678899999999999999 999999997764 44578999999999999999999999999988 667788999
Q ss_pred HHHHHHHHhCCchHHH-HHHHHHHHHHHHHc
Q psy875 195 EIGDLYELQEKPFELV-VSTHEKALDLARQN 224 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A-~~~~~~al~~~~~~ 224 (480)
++|.++...++ .+++ ...+++|+......
T Consensus 573 ~~~~~~~~~~~-~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 573 TSAVTLLSGRS-TSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHTC--------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHccCC-CCCCCHHHHHHHHHHHhhC
Confidence 99999988777 6666 67778887766554
No 219
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.49 E-value=5.6e-14 Score=131.60 Aligned_cols=190 Identities=18% Similarity=0.176 Sum_probs=147.4
Q ss_pred HhccccHHHHHHHHHH----HHHHhhccCchHHHHHHHHHHHH-----------HHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875 47 YKDNKQYNLAVDYFNK----ELRLHARNFPEAVKTLGEIGDLY-----------ELQEKSFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 47 ~~~~~~~~~A~~~~~~----al~~~~~~~~~~~~~~~~lg~~y-----------~~~~~~~~~A~~~~~kAl~~~~~~~~ 111 (480)
+...+.+++|+..+.+ ++.+ .+.. +|...|..+ ...++++++|+..+++++..
T Consensus 75 ~~~~~~~e~al~~~~~Ge~~~l~i----~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~------ 142 (336)
T 1p5q_A 75 LDLPYGLERAIQRMEKGEHSIVYL----KPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEE------ 142 (336)
T ss_dssp GTCCHHHHHHHTTCCTTCEEEEEE----CTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHH------
T ss_pred cccchHHHHHHhcCCCCCeEEEEE----CCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHH------
Confidence 3345577777777776 5444 3332 334444331 12457777887777776654
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc-------------HHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-------------LASCYISLAQTYKDNKQYNLAVDYFNKE 178 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-------------~~~~~~~la~~y~~~~~~~~A~~~~~~a 178 (480)
.+..+.++.++|.+|...|+|++|+.+|++++...+... ...++.++|.+|..+|+|++|+.+|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345578899999999999999999999999998776532 2688999999999999999999999999
Q ss_pred HhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHH-HHHHHHH
Q psy875 179 LRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTEL-EQIKTEL 257 (480)
Q Consensus 179 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 257 (480)
+++ .+....+++++|.+|..+|+ +++|+.+|++++++ .+....++..++.++..+|++++| ...++++
T Consensus 223 l~~----~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 223 LEL----DSNNEKGLSRRGEAHLAVND-FELARADFQKVLQL------YPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh----CCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 44557889999999999999 99999999999988 333456888999999999999999 4456655
Q ss_pred HH
Q psy875 258 KS 259 (480)
Q Consensus 258 ~~ 259 (480)
..
T Consensus 292 ~~ 293 (336)
T 1p5q_A 292 FE 293 (336)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 220
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.48 E-value=3.5e-13 Score=113.62 Aligned_cols=166 Identities=13% Similarity=0.051 Sum_probs=131.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT 117 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~ 117 (480)
..++.+|..+...|++++|+..|+++++. .|....++..+|.+| ...|++++|+..+++++...+ ++ .
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~~-~~~g~~~~A~~~~~~a~~~~p---~~----~ 74 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE----LQSRGDVKLAKADCL-LETKQFELAQELLATIPLEYQ---DN----S 74 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH----HHTSHHHHHHHHHHH-HHTTCHHHHHHHHTTCCGGGC---CH----H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHhhhccC---Ch----H
Confidence 35678899999999999999999999998 666678889999995 455999999999999987654 11 1
Q ss_pred HHHHHHHHH-HhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875 118 VMRSIKKLY-KKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196 (480)
Q Consensus 118 ~~~~l~~~y-~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 196 (480)
....++.+. ...++..+|+..+++++...|. ...++.++|.++...|++++|+.+|+++++..+.. ....++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~a~~~l 150 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAANPD--NFELACELAVQYNQVGRDEEALELLWNILKVNLGA--QDGEVKKTF 150 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT--TTTHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--ChHHHHHHH
Confidence 222333332 2334555689999999976654 45789999999999999999999999999883321 124578899
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHH
Q psy875 197 GDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 197 ~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
|.++..+|+ +++|...|++++..
T Consensus 151 ~~~~~~~g~-~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 151 MDILSALGQ-GNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHCS-SCHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CCcHHHHHHHHHHH
Confidence 999999999 99999999998764
No 221
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.48 E-value=2.7e-12 Score=106.62 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
...+..++.+|..+...|++++|+.+|+++++. .+....++..+|.+| ...|++++|+.++++++.+.+..
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~a~~~~~~~---- 80 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAY-LRTECYGYALGDATRAIELDKKY---- 80 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCccc----
Confidence 345667777888888888888888888888777 444466677777774 44477888888888877764321
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH 182 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~ 182 (480)
..++.++|.+|..+|++++|+.+|++++...+.......+..++..+...|++++|+.++.++..+.
T Consensus 81 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 81 --IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 4466777777777777777777777777666554434444555555777777777777777766553
No 222
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.47 E-value=1.9e-12 Score=126.11 Aligned_cols=141 Identities=8% Similarity=-0.048 Sum_probs=126.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc----CcHHH
Q psy875 120 RSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR----NFPEA 189 (480)
Q Consensus 120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~ 189 (480)
...+..+..+|+|++|+..|++++.+... +.++.++.+||.+|..+|+|++|+.++++++++... ++|..
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 35556688999999999999999876543 567899999999999999999999999999998554 89999
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQN--KDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
+..+.+||.+|..+|+ |++|+.+|++|+++.+.. .+.+........|+.++..++.+++|+..|+++.+-.
T Consensus 393 a~~l~nLa~~~~~~G~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGH-IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999988774 5788999999999999999999999999999987644
No 223
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.47 E-value=1e-12 Score=120.16 Aligned_cols=169 Identities=10% Similarity=-0.007 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
....++.+|..+...|++++|+..|+++++. .|....++..+|.+| ...|++++|+..+++++...+ + .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~~-~~~g~~~~A~~~l~~~~~~~p---~---~ 184 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL----SNQNGEIGLLLAETL-IALNRSEDAEAVLXTIPLQDQ---D---T 184 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTSCHHHHHHHHHHH-HHTTCHHHHHHHHTTSCGGGC---S---H
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCcchhHHHHHHHHH-HHCCCHHHHHHHHHhCchhhc---c---h
Confidence 3567899999999999999999999999999 666678899999995 555999999999999987643 1 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 195 (480)
.......+..+...++.++|+..|++++...| ....+++++|.+|...|++++|+..|.++++..++. ....++.+
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P--~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~--~~~~a~~~ 260 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAENP--EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA--ADGQTRXT 260 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG--GGGHHHHH
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc--ccchHHHH
Confidence 34456777778889999999999999997765 445789999999999999999999999999983321 12678899
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
++.++...|+ .++|...|++++..
T Consensus 261 l~~~~~~~g~-~~~a~~~~r~al~~ 284 (287)
T 3qou_A 261 FQEILAALGT-GDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCcHHHHHHHHHHH
Confidence 9999999999 99999999999864
No 224
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.46 E-value=8.1e-13 Score=133.29 Aligned_cols=154 Identities=8% Similarity=-0.083 Sum_probs=119.5
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH
Q psy875 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN 169 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~ 169 (480)
|++++|+.+++++++..+. ...++.++|.+|...|++++|+.+|++++...+. ...++.++|.+|..+|+++
T Consensus 3 g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG--HPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp ------------------C------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT--CHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHH
Confidence 7899999999999987543 2567899999999999999999999999987654 4678999999999999999
Q ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc---CC
Q psy875 170 LAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH---DK 246 (480)
Q Consensus 170 ~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 246 (480)
+|+.+|++++++ .+....++.++|.++...|+ +++|+.+|++++++ .+....++..++.++..+ |+
T Consensus 75 ~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~g~ 143 (568)
T 2vsy_A 75 EAAVLLQQASDA----APEHPGIALWLGHALEDAGQ-AEAAAAAYTRAHQL------LPEEPYITAQLLNWRRRLCDWRA 143 (568)
T ss_dssp HHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhhcccc
Confidence 999999999998 34446789999999999999 99999999999987 233457888999999999 99
Q ss_pred hHHHHHHHHHHHHHHH
Q psy875 247 FTELEQIKTELKSLEE 262 (480)
Q Consensus 247 ~~~A~~~~~~~~~l~~ 262 (480)
+++|...++++.+...
T Consensus 144 ~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999987653
No 225
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.46 E-value=3.2e-12 Score=116.91 Aligned_cols=170 Identities=10% Similarity=-0.003 Sum_probs=143.5
Q ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH
Q psy875 72 PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151 (480)
Q Consensus 72 ~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~ 151 (480)
+.....+..+|..+. ..|++++|+..|++++...+.. ..++..+|.++...|++++|+..+++++...+ ..
T Consensus 114 p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~ 184 (287)
T 3qou_A 114 PREEELXAQQAMQLM-QESNYTDALPLLXDAWQLSNQN------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DT 184 (287)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SH
T ss_pred CCchhhHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--ch
Confidence 455667788999954 4599999999999999886533 56789999999999999999999999987765 33
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHH
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIR 231 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 231 (480)
.......+..+...++.++|+..+++++.. .|....+++++|.++...|+ +++|+..|+++++.... ....
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~----~P~~~~~~~~la~~l~~~g~-~~~A~~~l~~~l~~~p~----~~~~ 255 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAE----NPEDAALATQLALQLHQVGR-NEEALELLFGHLRXDLT----AADG 255 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT----GGGG
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhc----CCccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhcccc----cccc
Confidence 456667788888999999999999999998 55567889999999999999 99999999999987211 1225
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 232 TVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 232 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
.++..++.++..+|+.++|...++++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 6788999999999999999999998765
No 226
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.46 E-value=2.5e-12 Score=125.23 Aligned_cols=146 Identities=8% Similarity=0.011 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc--CCC
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ--NKD 111 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~--~~~ 111 (480)
......+..+..+|+|++|+..+++++++. ..+++..+.++.++|.+|..+ |+|++|+.++++++.+... ..+
T Consensus 310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL-QAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHcCCC
Confidence 344556667888999999999999999986 677889999999999996555 9999999999999987654 456
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
++..+..+++||.+|..+|++++|+.+|++++.+... |.++.+..+++.++.+++.|++|...|.++.+...+
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888999999999999999999999999988865433 566778888899999999999999999888766433
No 227
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.45 E-value=4.3e-13 Score=109.36 Aligned_cols=103 Identities=12% Similarity=0.057 Sum_probs=92.5
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 191 (480)
.+....++.++|.++...|++++|+.+|++++...| ....++.++|.+|..+|+|++|+.+|++++++.+ ..+.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P----~~~~ 105 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK----NDYT 105 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS----SCCH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC----CCcH
Confidence 456678899999999999999999999999997765 4457899999999999999999999999999944 4456
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~ 221 (480)
+++++|.+|..+|+ +++|+.+|++++++.
T Consensus 106 ~~~~lg~~~~~lg~-~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 106 PVFHTGQCQLRLKA-PLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Confidence 89999999999999 999999999999874
No 228
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.45 E-value=2.6e-12 Score=114.38 Aligned_cols=208 Identities=8% Similarity=-0.049 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHH-------HHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI-------GDLYELQEKSFEIVQSTHEKALDLARQN 109 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l-------g~~y~~~~~~~~~A~~~~~kAl~~~~~~ 109 (480)
....+..|.-+ ..+++..|.+.|.++.++ .|..+.+|..+ +.+ ....+.+.+++..+++++.+....
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~----dP~~~Daw~g~~a~g~~~~~~-L~~~~r~~~a~~~~~~~l~l~p~~ 80 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNY----DESACDAWIGRIRCGDTDRVT-LFRAWYSRRNFGQLSGSVQISMST 80 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHTTCCCHHH-HHHHHHTGGGTTHHHHTTTCCGGG
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHh----ChhhhHHHHhHHHccCCcHHH-HHHHHHHHHHHHHHHHHhcCChhh
Confidence 34455666665 589999999999999999 88889999988 788 566688899999999999754432
Q ss_pred CCc---------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHH
Q psy875 110 KDD---------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDY 174 (480)
Q Consensus 110 ~~~---------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~ 174 (480)
-.. ..-..+...++.++...|+|++|.+.|...+... +... ..+.+|.++.+.++|++|+.+
T Consensus 81 l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 81 LNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp GCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHH
Confidence 111 1113456678999999999999999999887654 3444 789999999999999999999
Q ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy875 175 FNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD-DKLIRTVMRSMKKLYKKHDKFTELEQI 253 (480)
Q Consensus 175 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 253 (480)
|+++.... ++.....+++.+|.++..+|+ +++|+.+|++++. ... +.....+...+|.++.++|+.++|...
T Consensus 158 l~~a~~~~--d~~~~~~a~~~LG~al~~LG~-~~eAl~~l~~a~~----g~~~P~~~~da~~~~glaL~~lGr~deA~~~ 230 (282)
T 4f3v_A 158 VKSAGKWP--DKFLAGAAGVAHGVAAANLAL-FTEAERRLTEAND----SPAGEACARAIAWYLAMARRSQGNESAAVAL 230 (282)
T ss_dssp HTTGGGCS--CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT----STTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhhccC--CcccHHHHHHHHHHHHHHCCC-HHHHHHHHHHHhc----CCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98765542 222235689999999999999 9999999999863 122 333677889999999999999999999
Q ss_pred HHHHHHH
Q psy875 254 KTELKSL 260 (480)
Q Consensus 254 ~~~~~~l 260 (480)
++++...
T Consensus 231 l~~a~a~ 237 (282)
T 4f3v_A 231 LEWLQTT 237 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998874
No 229
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.45 E-value=4.1e-12 Score=101.16 Aligned_cols=131 Identities=24% Similarity=0.438 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT 117 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~ 117 (480)
.+++.+|.++...|++++|+.+++++++. .+....++..+|.+|... |++++|+.++++++...+.. ..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~ 70 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRS------AE 70 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTC------HH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc----CCcchhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCc------hH
Confidence 45677888888888888888888888777 344455667778874444 78888888888887664321 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
++..+|.++...|++++|+.++++++...+. ...++..+|.+|...|++++|+.+++++++.
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 5667788888888888888888877765433 2456777788888888888888888877765
No 230
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.44 E-value=1.1e-12 Score=114.02 Aligned_cols=135 Identities=16% Similarity=0.174 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 195 (480)
...+.++|.++...|++++|+.+|++++.. ...++.++|.+|...|++++|+.+|++++++ .+....++.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~ 76 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQDP-----HSRICFNIGCMYTILKNMTEAEKAFTRSINR----DKHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CccchHHHHH
Confidence 445789999999999999999999998622 3578999999999999999999999999998 3445678999
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHcC----------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKALDLARQNK----------DDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
+|.++...|+ +++|+.+|+++++...... ..+....++..+|.+|..+|++++|..+++++.++
T Consensus 77 lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 77 RGMLYYQTEK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHccc-HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999 9999999999998755443 34456688999999999999999999999998764
No 231
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.44 E-value=3.1e-13 Score=110.20 Aligned_cols=104 Identities=8% Similarity=-0.034 Sum_probs=81.4
Q ss_pred CchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc
Q psy875 71 FPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150 (480)
Q Consensus 71 ~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~ 150 (480)
.|....+++.+|.+|+.. |++++|+.+|++++.+.+.. ..++.++|.+|..+|+|++|+.+|++++...|...
T Consensus 32 ~p~~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNK-GRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp CHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 667777888888885444 88888888888888774432 55778888888888888888888888887775533
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHA 183 (480)
Q Consensus 151 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~ 183 (480)
.+++++|.+|..+|++++|+.+|++++++.+
T Consensus 105 --~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 105 --TPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 6788888888888888888888888888743
No 232
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.44 E-value=1.4e-12 Score=109.99 Aligned_cols=164 Identities=10% Similarity=-0.017 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHH
Q psy875 77 TLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI 156 (480)
Q Consensus 77 ~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (480)
.+...|..+.. .|++++|+..|++++...+.. ..++..+|.+|...|++++|+.+|++++...+ .. ..+.
T Consensus 8 ~~~~~a~~~~~-~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~--~~~~ 77 (176)
T 2r5s_A 8 QLLKQVSELLQ-QGEHAQALNVIQTLSDELQSR------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN--SYKS 77 (176)
T ss_dssp THHHHHHHHHH-TTCHHHHHHHHHTSCHHHHTS------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH--HHHH
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch--HHHH
Confidence 45677888444 499999999999999875533 56889999999999999999999999987776 22 2333
Q ss_pred HHHHHH-HhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy875 157 SLAQTY-KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMR 235 (480)
Q Consensus 157 ~la~~y-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 235 (480)
.++.+. ...++..+|+..++++++. .|....++..+|.++...|+ +++|+..|+++++.... .....++.
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~al~~----~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~----~~~~~a~~ 148 (176)
T 2r5s_A 78 LIAKLELHQQAAESPELKRLEQELAA----NPDNFELACELAVQYNQVGR-DEEALELLWNILKVNLG----AQDGEVKK 148 (176)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTT----TTTTHHHH
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcc----cChHHHHH
Confidence 344443 2334455689999999998 45557889999999999999 99999999999876211 11235778
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q psy875 236 SMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 236 ~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
.++.++..+|+.++|...++++..
T Consensus 149 ~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 149 TFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999999998764
No 233
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=3.5e-12 Score=100.82 Aligned_cols=122 Identities=13% Similarity=0.055 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
.+..+..+|..+...|+|++|+.+|++++...+. ...++.++|.+|..+|++++|+.++++++++ .|....++.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~ 76 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFPEAIADCNKAIEK----DPNFVRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHH
Confidence 3567889999999999999999999999977644 4588999999999999999999999999999 444577899
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy875 195 EIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK 243 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (480)
.+|.++..+|+ +++|+..|++++++.....+.+....+...++.+..+
T Consensus 77 ~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 77 RKATAQIAVKE-YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999 9999999999999976555555556666666666544
No 234
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.42 E-value=7.7e-12 Score=103.82 Aligned_cols=143 Identities=14% Similarity=0.108 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT 192 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 192 (480)
...+..+..+|.++...|++++|+.+|++++...+. ...++.++|.++...|++++|+.+++++++.. +....+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~ 83 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD----KKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cccHHH
Confidence 345677899999999999999999999999976643 46789999999999999999999999999983 444678
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875 193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266 (480)
Q Consensus 193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~ 266 (480)
+..+|.++...|+ +++|+.++++++.+.. ... .......++..+...|++++|..++++...+.+++..
T Consensus 84 ~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p---~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (166)
T 1a17_A 84 YYRRAASNMALGK-FRAALRDYETVVKVKP---HDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 152 (166)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHST---TCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcc-HHHHHHHHHHHHHhCC---CCH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccch
Confidence 9999999999999 9999999999987732 122 2233455666688999999999999999998887665
No 235
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.42 E-value=1.1e-11 Score=120.94 Aligned_cols=186 Identities=14% Similarity=0.144 Sum_probs=151.0
Q ss_pred HHHHHHHHHhccc---cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHhhhcCCC
Q psy875 39 CYISLAQTYKDNK---QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE----KSFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 39 ~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~----~~~~~A~~~~~kAl~~~~~~~~ 111 (480)
+++.||.+|...| ++++|+++|+++.+. .+..+..++++|.+ +... +++++|+.+|++|. + ++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----g~~~a~~~~~Lg~~-y~~g~~~~~d~~~A~~~~~~aa---~--g~ 247 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR----GTVTAQRVDSVARV-LGDATLGTPDEKTAQALLEKIA---P--GY 247 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----TCSCHHHHHHHHHH-HTCGGGSSCCHHHHHHHHHHHG---G--GS
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHH-HhCCCCCCCCHHHHHHHHHHHc---C--CC
Confidence 8899999999999 999999999999988 55556667889999 4553 68999999999987 2 11
Q ss_pred chHHHHHHHHHHHH-H--HhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc-----cHHHHHHHHHHHHhhhh
Q psy875 112 DKLIRTVMRSIKKL-Y--KKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK-----QYNLAVDYFNKELRLHA 183 (480)
Q Consensus 112 ~~~~~~~~~~l~~~-y--~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~-----~~~~A~~~~~~al~~~~ 183 (480)
..++.++|.+ | ...+++++|+.+|+++.... ...++++||.+|. .| ++++|+.+|+++. .
T Consensus 248 ----~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~ 315 (452)
T 3e4b_A 248 ----PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---G 315 (452)
T ss_dssp ----THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---T
T ss_pred ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---C
Confidence 4577899998 5 57899999999999988432 4578899999998 56 9999999999987 2
Q ss_pred cCcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHH
Q psy875 184 RNFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK----HDKFTELEQIKT 255 (480)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 255 (480)
+ .+.+++++|.+|.. ..+ +++|..+|+++.+. ++ ..+...||.+|.. ..++.+|..+++
T Consensus 316 g----~~~A~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 316 R----EVAADYYLGQIYRRGYLGKVY-PQKALDHLLTAARN----GQ----NSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp T----CHHHHHHHHHHHHTTTTSSCC-HHHHHHHHHHHHTT----TC----TTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred C----CHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHhh----Ch----HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 2 25688999998887 336 99999999998753 22 3467789999985 568999999999
Q ss_pred HHHH
Q psy875 256 ELKS 259 (480)
Q Consensus 256 ~~~~ 259 (480)
++.+
T Consensus 383 ~A~~ 386 (452)
T 3e4b_A 383 LAKA 386 (452)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8865
No 236
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.41 E-value=5.8e-12 Score=109.51 Aligned_cols=135 Identities=19% Similarity=0.200 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHH
Q psy875 77 TLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI 156 (480)
Q Consensus 77 ~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (480)
.++.+|.+|+.. |++++|+.+|++++. + ...++.++|.+|...|++++|+.+|++++...+ ....++.
T Consensus 8 ~~~~~g~~~~~~-~~~~~A~~~~~~a~~-----~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~ 75 (213)
T 1hh8_A 8 SLWNEGVLAADK-KDWKGALDAFSAVQD-----P----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYF 75 (213)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHTSSS-----C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHcC-----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHH
Confidence 345555553333 666666666655531 0 123555666666666666666666666654442 3345566
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhhhcC------------cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc
Q psy875 157 SLAQTYKDNKQYNLAVDYFNKELRLHARN------------FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQN 224 (480)
Q Consensus 157 ~la~~y~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~ 224 (480)
++|.+|..+|++++|+.+|+++++..+.+ .+....++.++|.++..+|+ +++|+.++++++++....
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC-HHHHHHHHHHHHHcCccc
Confidence 66666666666666666666666653331 23344566666666666666 666666666666655444
No 237
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.40 E-value=5.6e-13 Score=114.75 Aligned_cols=158 Identities=10% Similarity=0.017 Sum_probs=111.9
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch--------
Q psy875 42 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK-------- 113 (480)
Q Consensus 42 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~-------- 113 (480)
..+......|.+++|.+.+...... ....+..+..+|..|+.. |+|++|+.+|++++.+.+...+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEE----KVQSAFDIKEEGNEFFKK-NEINEAIVKYKEALDFFIHTEEWDDQILLDKK 83 (198)
T ss_dssp -------------CCCSGGGCCHHH----HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHH----HHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 3444455566666666666554433 445566777888885554 888888888888887765543211
Q ss_pred --HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875 114 --LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191 (480)
Q Consensus 114 --~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 191 (480)
....++.++|.+|..+|++++|+.++++++...+ ....+++.+|.+|..+|++++|+.+|++++++. +....
T Consensus 84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~ 157 (198)
T 2fbn_A 84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYKAASLN----PNNLD 157 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTCHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHH
Confidence 1247889999999999999999999999997764 446789999999999999999999999999983 44467
Q ss_pred HHHHHHHHHHHhCCchHHHH
Q psy875 192 TLGEIGDLYELQEKPFELVV 211 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~ 211 (480)
++..++.++...++ +.++.
T Consensus 158 ~~~~l~~~~~~~~~-~~~~~ 176 (198)
T 2fbn_A 158 IRNSYELCVNKLKE-ARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHH-HHC--
T ss_pred HHHHHHHHHHHHHH-HHHHH
Confidence 78889999988888 77766
No 238
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.39 E-value=1.1e-11 Score=98.61 Aligned_cols=131 Identities=21% Similarity=0.342 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 196 (480)
.++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.+++++++.. +.....+..+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l 75 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PRSAEAWYNL 75 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----CCchHHHHHH
Confidence 35778999999999999999999998866543 35678889999999999999999999998873 3335678889
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
|.++...|+ +++|+.++++++... +....++..++.++...|++++|..+++++..+
T Consensus 76 ~~~~~~~~~-~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 76 GNAYYKQGD-YDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHTTTC-HHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-HHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999 999999999998762 222456778999999999999999999988764
No 239
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.37 E-value=1e-12 Score=128.42 Aligned_cols=152 Identities=12% Similarity=0.063 Sum_probs=120.1
Q ss_pred ccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC---------chHHHHHH
Q psy875 49 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD---------DKLIRTVM 119 (480)
Q Consensus 49 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~---------~~~~~~~~ 119 (480)
..+++++|+..|.++++. .+..+..+..+|.+|+.. |+|++|+.+|++|+.+.+.... ......++
T Consensus 246 ~l~~~~~A~~~~~~~~~~----~~~~a~~~~~~G~~~~~~-g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE----KLEQAAIVKEKGTVYFKG-GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320 (457)
T ss_dssp EEEEEECCCCGGGSCHHH----HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH----HHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence 345666777777776666 566677788888885554 8888888888888887665421 23346789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q psy875 120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL 199 (480)
Q Consensus 120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 199 (480)
.++|.+|..+|+|++|+.+|++++...+. ...+++++|.+|..+|+|++|+.+|++++++ .+....++..++.+
T Consensus 321 ~nla~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l----~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 321 LNLAMCYLKLREYTKAVECCDKALGLDSA--NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV----NPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----C----CHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Confidence 99999999999999999999999987654 4688999999999999999999999999998 45556789999999
Q ss_pred HHHhCCchHHHHH
Q psy875 200 YELQEKPFELVVS 212 (480)
Q Consensus 200 ~~~~~~~~~~A~~ 212 (480)
+..+++ +++|..
T Consensus 395 ~~~~~~-~~~a~~ 406 (457)
T 1kt0_A 395 QKKAKE-HNERDR 406 (457)
T ss_dssp HHHHHH-HHHHHH
T ss_pred HHHHHH-HHHHHH
Confidence 999999 877764
No 240
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.36 E-value=9.5e-13 Score=128.63 Aligned_cols=149 Identities=21% Similarity=0.212 Sum_probs=123.8
Q ss_pred hhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc-------------HHHH
Q psy875 88 QEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-------------LASC 154 (480)
Q Consensus 88 ~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-------------~~~~ 154 (480)
.++++++|+..+++++.. .+..+.++.++|..|...|+|++|+.+|++++...+... ...+
T Consensus 246 ~l~~~~~A~~~~~~~~~~------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~ 319 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319 (457)
T ss_dssp EEEEEECCCCGGGSCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHH
Confidence 446677777777666554 345578899999999999999999999999998765532 2688
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy875 155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVM 234 (480)
Q Consensus 155 ~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 234 (480)
+.++|.+|..+|+|++|+.+|++++++ .+....+++++|.+|..+|+ |++|+..|++++++ .+....++
T Consensus 320 ~~nla~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~~g~a~~~~g~-~~~A~~~~~~al~l------~P~~~~a~ 388 (457)
T 1kt0_A 320 FLNLAMCYLKLREYTKAVECCDKALGL----DSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEV------NPQNKAAR 388 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTT------C----CHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHh------CCCCHHHH
Confidence 999999999999999999999999999 44457889999999999999 99999999999987 44556788
Q ss_pred HHHHHHHHHcCChHHHHHH
Q psy875 235 RSMKKLYKKHDKFTELEQI 253 (480)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~ 253 (480)
..++.++..++++++|...
T Consensus 389 ~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 389 LQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888753
No 241
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.36 E-value=2.1e-12 Score=111.13 Aligned_cols=149 Identities=17% Similarity=0.124 Sum_probs=114.1
Q ss_pred HHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc--------------H
Q psy875 86 ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD--------------L 151 (480)
Q Consensus 86 ~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~--------------~ 151 (480)
...+++|++|.+.+..... .....+..+..+|..+...|+|++|+.+|++++...+... .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDE------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp --------CCCSGGGCCHH------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHH------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 3344666666555543322 2344577889999999999999999999999997655422 1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHH
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIR 231 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 231 (480)
..++.++|.+|..+|+|++|+.++++++++ .+....+++.+|.++..+|+ +++|+.+|++++.+ .+...
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~------~p~~~ 156 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKI----DKNNVKALYKLGVANMYFGF-LEEAKENLYKAASL------NPNNL 156 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH------STTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHH------CCCcH
Confidence 378999999999999999999999999998 44456789999999999999 99999999999987 33345
Q ss_pred HHHHHHHHHHHHcCChHHHH
Q psy875 232 TVMRSMKKLYKKHDKFTELE 251 (480)
Q Consensus 232 ~~~~~l~~~~~~~g~~~~A~ 251 (480)
.++..++.++..+++..++.
T Consensus 157 ~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 157 DIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67788899999998888776
No 242
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.36 E-value=5e-12 Score=103.07 Aligned_cols=114 Identities=11% Similarity=0.025 Sum_probs=97.0
Q ss_pred HHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy875 97 STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFN 176 (480)
Q Consensus 97 ~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~ 176 (480)
..|++++.+ .+....++.++|.++...|++++|+.+|++++...+. ...++.++|.+|..+|++++|+.+|+
T Consensus 8 ~~~~~al~~------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 8 GTIAMLNEI------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--DSRFFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp CSHHHHTTC------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHcC------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 445666654 3445678899999999999999999999999977654 45788999999999999999999999
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875 177 KELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ 223 (480)
Q Consensus 177 ~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 223 (480)
+++++. |..+.+++++|.++..+|+ +++|+.+|++++++...
T Consensus 80 ~al~l~----p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 80 YGAVMD----IXEPRFPFHAAECLLQXGE-LAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHS----TTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTT
T ss_pred HHHhcC----CCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcC
Confidence 999994 4445788999999999999 99999999999988643
No 243
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.35 E-value=1.8e-11 Score=98.61 Aligned_cols=108 Identities=10% Similarity=0.061 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC------chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc--
Q psy875 74 AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD------DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS-- 145 (480)
Q Consensus 74 ~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~------~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~-- 145 (480)
.+..+.+.|..+ ...|+|++|+..|++|+++.+..++ .+....+|.++|.++..+|+|++|+.+|.+++..
T Consensus 10 ~a~~~~~~G~~l-~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 10 GAYLALSDAQRQ-LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 345566778874 4448888888888888887765321 1233457888888888888888888888888866
Q ss_pred -----cccccHHHHH----HHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 146 -----DLCKDLASCY----ISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 146 -----~~~~~~~~~~----~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
. |....+| +++|.++..+|++++|+..|++++++.++
T Consensus 89 ~~~e~~--pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 89 RRGELN--QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHCCTT--STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccCC--CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4 3445566 77888888888888888888888777544
No 244
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.34 E-value=4.3e-11 Score=116.78 Aligned_cols=191 Identities=12% Similarity=0.148 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHhhhcCCCch
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK---SFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~---~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
..+++.+|.+|...+.+++++.......+......+. +++.+|.+|.. .| ++++|+.+|++|.+....
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~-~g~~~~~~~A~~~~~~aa~~g~~----- 211 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQK-KQQPEQQAELLKQMEAGVSRGTV----- 211 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCS-----
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHH-cCCcccHHHHHHHHHHHHHCCCH-----
Confidence 4467778888887775555555533333332111222 77899999666 58 999999999999876432
Q ss_pred HHHHHHHHHHHHHHhc----CChHHHHHHHHHHhcccccccHHHHHHHHHHH-H--HhhccHHHHHHHHHHHHhhhhcCc
Q psy875 114 LIRTVMRSIKKLYKKH----DNLDSACSELHTVLSSDLCKDLASCYISLAQT-Y--KDNKQYNLAVDYFNKELRLHARNF 186 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~----~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~-y--~~~~~~~~A~~~~~~al~~~~~~~ 186 (480)
.+..+.++|.+|... +++++|+.+|+++. +....++++||.+ | ...+++++|+.+|+++.+.
T Consensus 212 -~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----- 280 (452)
T 3e4b_A 212 -TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----- 280 (452)
T ss_dssp -CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-----
T ss_pred -HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-----
Confidence 244568899999776 79999999999987 3345788999998 5 5789999999999999865
Q ss_pred HHHHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q psy875 187 PEAVKTLGEIGDLYELQE-----KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK----HDKFTELEQIKTEL 257 (480)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 257 (480)
..+.+++++|.+|. .| + +++|+.+|++|. .+ ...+...||.+|.. ..++++|..+++++
T Consensus 281 -g~~~A~~~Lg~~y~-~G~g~~~d-~~~A~~~~~~Aa-----~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 281 -DQPRAELLLGKLYY-EGKWVPAD-AKAAEAHFEKAV-----GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp -TCHHHHHHHHHHHH-HCSSSCCC-HHHHHHHHHTTT-----TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHH-cCCCCCCC-HHHHHHHHHHHh-----CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 23678899999998 55 7 999999999987 12 34678889999887 45999999999988
Q ss_pred HH
Q psy875 258 KS 259 (480)
Q Consensus 258 ~~ 259 (480)
.+
T Consensus 349 a~ 350 (452)
T 3e4b_A 349 AR 350 (452)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 245
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.34 E-value=3e-11 Score=97.33 Aligned_cols=109 Identities=12% Similarity=0.031 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-------c---cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-------K---DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-------~---~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
.+..+.++|..+...|+|++|+.+|++++...|. . ..+.+|.++|.++..+|+|++|+..|+++++++..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3566789999999999999999999999988876 1 12459999999999999999999999999998222
Q ss_pred ---CcHHHHHHH----HHHHHHHHHhCCchHHHHHHHHHHHHHHHHc
Q psy875 185 ---NFPEAVKTL----GEIGDLYELQEKPFELVVSTHEKALDLARQN 224 (480)
Q Consensus 185 ---~~~~~~~~~----~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~ 224 (480)
-.|..+.+| +++|.++..+|+ +++|+..|++++++....
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr-~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCC-HHHHHHHHHHHHhcCCCc
Confidence 234456677 999999999999 999999999999986653
No 246
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=3.5e-11 Score=120.24 Aligned_cols=209 Identities=12% Similarity=0.111 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHhc-------cccHH-------HHHHHHHHHHH-HhhccCchHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy875 35 DLASCYISLAQTYKD-------NKQYN-------LAVDYFNKELR-LHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTH 99 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~-------~~~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~ 99 (480)
....+++.+|.++.. .|+++ +|+..|++|++ + .|.....|..+|.+ +...|++++|...|
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~----~p~~~~l~~~~~~~-~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL----LKKNMLLYFAYADY-EESRMKYEKVHSIY 344 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT----CSSCHHHHHHHHHH-HHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh----CcccHHHHHHHHHH-HHhcCCHHHHHHHH
Confidence 345678888888875 78877 89999999986 5 45667788899999 55559999999999
Q ss_pred HHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH-HHhhccHHHHHHHHHHH
Q psy875 100 EKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT-YKDNKQYNLAVDYFNKE 178 (480)
Q Consensus 100 ~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~-y~~~~~~~~A~~~~~~a 178 (480)
++++.+.+. . ...++..+|.++...|++++|...|++++...+.. ...+...+.+ +...|++++|..+|+++
T Consensus 345 ~~al~~~p~---~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~--~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 345 NRLLAIEDI---D--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHHHHSSSS---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC--THHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHhCcccc---C--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc--hHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 999986332 1 12478899999999999999999999999775432 3444455544 44689999999999999
Q ss_pred HhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875 179 LRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK 258 (480)
Q Consensus 179 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 258 (480)
++..+ ..+.++..++.++...|+ +++|...|++++.... .++.....++.....+....|+.+.+..+.+++.
T Consensus 418 l~~~p----~~~~~~~~~~~~~~~~g~-~~~Ar~~~~~al~~~~--~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 418 LKKYG----DIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHT----TCHHHHHHHHHHHTTTTC-HHHHHHHHHHHHHSCC--SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHCC----CCHHHHHHHHHHHHhCCC-HhhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99854 345788999999999999 9999999999986521 1222345567677888889999999999999988
Q ss_pred HHHH
Q psy875 259 SLEE 262 (480)
Q Consensus 259 ~l~~ 262 (480)
+...
T Consensus 491 ~~~p 494 (530)
T 2ooe_A 491 TAFR 494 (530)
T ss_dssp HHTH
T ss_pred HHCc
Confidence 7664
No 247
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.34 E-value=8.8e-11 Score=123.41 Aligned_cols=186 Identities=15% Similarity=0.139 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
..+|+.+|.++...|++++|+..|.+| +....|..+|.+ +.+.|+|++|+++|..|.+..+...
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA---------dD~say~eVa~~-~~~lGkyEEAIeyL~mArk~~~e~~------ 1168 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQA-ANTSGNWEELVKYLQMARKKARESY------ 1168 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc---------CChHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhccccc------
Confidence 568899999999999999999999875 234566788999 6666999999999999987653221
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 196 (480)
+...+|..|.+++++++ ++.|.+ .+.. ..+.++|..+...|+|++|..+|.++ ..|..+
T Consensus 1169 -Idt~LafaYAKl~rlee-le~fI~------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rL 1227 (1630)
T 1xi4_A 1169 -VETELIFALAKTNRLAE-LEEFIN------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRL 1227 (1630)
T ss_pred -ccHHHHHHHHhhcCHHH-HHHHHh------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHH
Confidence 11235666666666663 333321 1122 23445666666666666666666653 245566
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHH------------------HcCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 197 GDLYELQEKPFELVVSTHEKALDLAR------------------QNKD-DKLIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 197 ~~~~~~~~~~~~~A~~~~~~al~~~~------------------~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
|.++.++|+ +++|++.+++|..... ..+. .....+.+..++.+|.+.|.+++|+.+++.+
T Consensus 1228 A~tLvkLge-~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1228 ASTLVHLGE-YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHhCC-HHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666 6666666666532210 0000 0012234457788888888888888888877
Q ss_pred HHH
Q psy875 258 KSL 260 (480)
Q Consensus 258 ~~l 260 (480)
..+
T Consensus 1307 L~L 1309 (1630)
T 1xi4_A 1307 LGL 1309 (1630)
T ss_pred hcc
Confidence 543
No 248
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.33 E-value=6.9e-12 Score=114.24 Aligned_cols=195 Identities=12% Similarity=0.079 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
+..++.+|..+...|+|++|+.+|.++++. .+....++.++|.+|. ..|++++|+.++++|+.+.+. ..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~------~~ 72 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQ------SV 72 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTT------CH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCC------CH
Confidence 567899999999999999999999999999 6666788999999955 459999999999999987432 25
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 196 (480)
.++.++|.+|..+|++++|+.+|++++...+..... +........ +..++..+..........+ + .+...+
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~---~i~~~l 143 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSAL---RIAKKKRWNSIEERRIHQE-S---ELHSYL 143 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--CCSHHHHHH---HHHHHHHHHHHHHTCCCCC-C---HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhh--HHHHHHHHH---HHHHHHHHHHHHHHHHhhh-H---HHHHHH
Confidence 678999999999999999999999999877653110 000111111 1111222222222221112 2 223334
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
+.+. .|+ +++|++.++++++... ........+..+..-+... +++|...+.++.+
T Consensus 144 ~~l~--~~~-~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~--~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 144 TRLI--AAE-RERELEECQRNHEGHE---DDGHIRAQQACIEAKHDKY--MADMDELFSQVDE 198 (281)
T ss_dssp HHHH--HHH-HHHHHTTTSGGGTTTS---CHHHHTHHHHHHHHHHHHH--HHHHHHHHHHSSC
T ss_pred HHHH--HHH-HHHHHHHHHhhhcccc---chhhhhhHHHHHHHHHHHH--HHHHHHHHHhhhc
Confidence 4443 577 8999999988887621 1112222222222222111 2356777777766
No 249
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.33 E-value=9.5e-12 Score=101.39 Aligned_cols=115 Identities=9% Similarity=-0.028 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHH
Q psy875 58 DYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACS 137 (480)
Q Consensus 58 ~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~ 137 (480)
..|++++.+ .+.....++.+|.+++.. |++++|+..|++++.+.+.. ..++.++|.+|..+|++++|+.
T Consensus 8 ~~~~~al~~----~p~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~ 76 (148)
T 2vgx_A 8 GTIAMLNEI----SSDTLEQLYSLAFNQYQS-GXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIH 76 (148)
T ss_dssp CSHHHHTTC----CHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHcC----CHhhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHH
Confidence 356666666 677777888888885555 89999999999988774432 4567888999999999999999
Q ss_pred HHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC
Q psy875 138 ELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN 185 (480)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~ 185 (480)
+|++++...|.. ..+++++|.+|..+|++++|+.+|++++++.+.+
T Consensus 77 ~~~~al~l~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 77 SYSYGAVMDIXE--PRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHSTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 999888776543 3678889999999999999999999998886553
No 250
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.32 E-value=4e-11 Score=94.68 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHH
Q psy875 76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY 155 (480)
Q Consensus 76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (480)
..+..+|..|+.. |+|++|+.+|++++.+.+.. ..++.++|.+|..+|++++|+.+|++++...+. ...++
T Consensus 5 ~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~ 75 (126)
T 3upv_A 5 EEARLEGKEYFTK-SDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHH
T ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHH
Confidence 3444555553332 55555555555555543221 244555555555555555555555555544332 23455
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 156 ISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 156 ~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
.++|.+|..+|++++|+.+|++++++
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 55555555555555555555555555
No 251
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.32 E-value=2.9e-11 Score=96.12 Aligned_cols=122 Identities=14% Similarity=0.179 Sum_probs=104.3
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 191 (480)
.+....++..+|.++...|++++|+.+|++++...+. ...++..+|.+|...|++++|+.+++++++.. +....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~ 85 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--DAKLYSNRAACYTKLLEFQLALKDCEECIQLE----PTFIK 85 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC----TTCHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCchH
Confidence 3556778999999999999999999999999977643 36789999999999999999999999999983 34467
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK 246 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (480)
++..+|.++...|+ +++|+.++++++.. .+....++..++.++..+|+
T Consensus 86 ~~~~la~~~~~~~~-~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 86 GYTRKAAALEAMKD-YTKAMDVYQKALDL------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhcC
Confidence 89999999999999 99999999999987 33345677788888887764
No 252
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.32 E-value=4.8e-11 Score=99.10 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
.+..++.+|.++...|+|++|+.+|++++++ .+....++.++|.+|.. .|++++|+.++++++.+.+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~------ 78 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI----APANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKY------ 78 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC------
Confidence 4566777777777777777777777777777 44455666777777433 377777777777777664322
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~ 150 (480)
..++.++|.+|..+|++++|+.+|++++...+...
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 45666777777777777777777777776665543
No 253
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.31 E-value=2.3e-11 Score=100.78 Aligned_cols=103 Identities=12% Similarity=-0.019 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccc----------------cccHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL----------------CKDLASCYISLAQTYKDNKQYNLAVDYFN 176 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~----------------~~~~~~~~~~la~~y~~~~~~~~A~~~~~ 176 (480)
...+..+..+|..+...|+|++|+.+|.+++...+ .+....++.++|.+|..+|+|++|+.+++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34567889999999999999999999999987621 34557899999999999999999999999
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 177 KELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 177 ~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
+++++ .|..+.+++.+|.++..+|+ +++|+..|++++.+
T Consensus 88 ~al~~----~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l 126 (162)
T 3rkv_A 88 EVLKR----EETNEKALFRRAKARIAAWK-LDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHH----STTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHhc----CCcchHHHHHHHHHHHHHhc-HHHHHHHHHHHHhc
Confidence 99999 45567899999999999999 99999999999988
No 254
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.30 E-value=2.5e-11 Score=100.65 Aligned_cols=126 Identities=16% Similarity=0.107 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC------------chHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy875 73 EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD------------DKLIRTVMRSIKKLYKKHDNLDSACSELH 140 (480)
Q Consensus 73 ~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~------------~~~~~~~~~~l~~~y~~~~~~~~A~~~~~ 140 (480)
..+..+...|..|+.. |+|++|+.+|.+|+.+...... .+....++.++|.+|..+|+|++|+.+++
T Consensus 9 ~~a~~~~~~G~~~~~~-~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQ-KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3456677778775544 7888888888888876432110 34456789999999999999999999999
Q ss_pred HHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC
Q psy875 141 TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE 204 (480)
Q Consensus 141 ~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (480)
+++... |....+++.+|.+|..+|+|++|+.+|++++++.+.+. ..+...++.+....+
T Consensus 88 ~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 88 EVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA---SVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHHHHH
T ss_pred HHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHH
Confidence 999776 44568899999999999999999999999999943322 133444555544433
No 255
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.29 E-value=6.2e-11 Score=94.14 Aligned_cols=122 Identities=13% Similarity=0.131 Sum_probs=93.0
Q ss_pred CchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc
Q psy875 71 FPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150 (480)
Q Consensus 71 ~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~ 150 (480)
.+....++..+|.+|... |++++|+.++++++...+.. ..++..+|.+|...|++++|+.++++++...+ .
T Consensus 12 ~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~ 82 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQK-GDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLEP--T 82 (133)
T ss_dssp SSCHHHHHHHHHHHHHHT-TCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--T
T ss_pred CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--C
Confidence 455667788888885444 88888888888888764322 46778888888888888888888888886654 3
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCC
Q psy875 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 205 (480)
Q Consensus 151 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (480)
...++..+|.+|...|++++|+.+++++++. .+....++..++.++..+|+
T Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDL----DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CGGGTHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHhcC
Confidence 4567888888888889999999999888887 33445677788888877664
No 256
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.29 E-value=6e-11 Score=93.75 Aligned_cols=123 Identities=19% Similarity=0.149 Sum_probs=105.1
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 191 (480)
.+....++..+|.++...|++++|+.+|++++...+. ...++..+|.+|...|++++|+.+++++++.. +....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~ 81 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICID----PAYSK 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC----ccCHH
Confidence 4556778899999999999999999999999876643 35789999999999999999999999999983 33467
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKF 247 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (480)
++..+|.++...|+ +++|+.++++++... +....++..++.++..+|++
T Consensus 82 ~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 82 AYGRMGLALSSLNK-HVEAVAYYKKALELD------PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCC-HHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHHhcC
Confidence 88999999999999 999999999998872 22345778899999988876
No 257
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.28 E-value=1.3e-10 Score=106.00 Aligned_cols=209 Identities=15% Similarity=0.088 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH---Hhh---ccHHHHHHHHHHHH
Q psy875 32 LCKDLASCYISLAQTYKDNK--QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE---LQE---KSFEIVQSTHEKAL 103 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~---~~~---~~~~~A~~~~~kAl 103 (480)
..+....+++..+.+....+ .+++++.++.+++.. .|....+|+..+.+.. ..+ +++++++.++.+++
T Consensus 62 ~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l 137 (306)
T 3dra_A 62 ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD----NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAML 137 (306)
T ss_dssp HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHH
T ss_pred HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 33455678999999999998 999999999999999 6777777888888831 444 78999999999999
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHhcCChH--HHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc------HHHHHHHH
Q psy875 104 DLARQNKDDKLIRTVMRSIKKLYKKHDNLD--SACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ------YNLAVDYF 175 (480)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~--~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~------~~~A~~~~ 175 (480)
...++. ..++...+.+...+|.++ ++++++.+++...+.. ..++...+.+....++ ++++++++
T Consensus 138 ~~~pkn------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N--~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 138 SSDPKN------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN--NSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHCTTC------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HhCCCC------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 875543 567888999999999999 9999999999776544 4778888999998887 99999999
Q ss_pred HHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy875 176 NKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKT 255 (480)
Q Consensus 176 ~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 255 (480)
++++.. .|....+|..++.++...|+.++.+..++.+++.+. ...+.-..++..++.+|.+.|+.++|.++++
T Consensus 210 ~~aI~~----~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 210 KDKIVK----CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE---KDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHH----CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG---GTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHh----CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc---CCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 999998 455567899999999999994444556776665432 0122334578899999999999999999999
Q ss_pred HHHH
Q psy875 256 ELKS 259 (480)
Q Consensus 256 ~~~~ 259 (480)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 258
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.28 E-value=7.9e-11 Score=97.78 Aligned_cols=106 Identities=12% Similarity=0.013 Sum_probs=94.5
Q ss_pred CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHH
Q psy875 111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAV 190 (480)
Q Consensus 111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 190 (480)
+....+..+..+|.++...|+|++|+.+|++++...+. ...++.++|.+|..+|+|++|+.+|++++++ .+...
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~ 79 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA--NPIYLSNRAAAYSASGQHEKAAEDAELATVV----DPKYS 79 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCH
Confidence 44566788999999999999999999999999977654 4688999999999999999999999999999 44457
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875 191 KTLGEIGDLYELQEKPFELVVSTHEKALDLARQ 223 (480)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 223 (480)
.++.++|.++..+|+ +++|+.+|++++++...
T Consensus 80 ~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 80 KAWSRLGLARFDMAD-YKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCC
Confidence 889999999999999 99999999999988543
No 259
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.27 E-value=1.3e-10 Score=91.80 Aligned_cols=117 Identities=18% Similarity=0.183 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHH
Q psy875 76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY 155 (480)
Q Consensus 76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (480)
..+..+|.+|... |++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+. ...++
T Consensus 13 ~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~ 83 (131)
T 2vyi_A 13 ERLKTEGNEQMKV-ENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA--YSKAY 83 (131)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHH
T ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--CHHHH
Confidence 3344444442222 44444444444444432211 233444444444444444444444444433221 22344
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCC
Q psy875 156 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 205 (480)
Q Consensus 156 ~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (480)
..+|.+|...|++++|+.+++++++.. +....++..+|.++...|+
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELD----PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHhc
Confidence 445555555555555555555555442 1223344445555554444
No 260
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.27 E-value=4.5e-11 Score=100.58 Aligned_cols=126 Identities=14% Similarity=0.251 Sum_probs=100.1
Q ss_pred HhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHH-
Q psy875 47 YKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKL- 125 (480)
Q Consensus 47 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~- 125 (480)
+...|++++|+..++++++. .+....++..+|.+|... |++++|+.+|++++.+.+.. ..++..+|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l 88 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA----NPQNSEQWALLGEYYLWQ-NDYSNSLLAYRQALQLRGEN------AELYAALATVL 88 (177)
T ss_dssp CC-----CCCCHHHHHHHHH----CCSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHH
Confidence 34678999999999999988 556667888999995554 99999999999999886532 4577889999
Q ss_pred HHhcCCh--HHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC
Q psy875 126 YKKHDNL--DSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN 185 (480)
Q Consensus 126 y~~~~~~--~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~ 185 (480)
|...|++ ++|+.+|++++...+. ...++..+|.+|...|++++|+.+|++++++.+.+
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 89 YYQASQHMTAQTRAMIDKALALDSN--EITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHhcCCcchHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 8899998 9999999999877643 35778899999999999999999999999885543
No 261
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.26 E-value=2.1e-11 Score=110.98 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHH
Q psy875 74 AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLAS 153 (480)
Q Consensus 74 ~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~ 153 (480)
.+..+..+|..|+.. |+|++|+.+|++|+...+. ...++.++|.+|..+|++++|+.+|++++...+ ....
T Consensus 3 ~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~ 73 (281)
T 2c2l_A 3 SAQELKEQGNRLFVG-RKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVK 73 (281)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHH
T ss_pred hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHH
Confidence 356778899995555 9999999999999988543 256789999999999999999999999998764 4457
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 154 CYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 154 ~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
+++++|.+|..+|++++|+.+|++++++.++
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8999999999999999999999999998654
No 262
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.25 E-value=2e-10 Score=92.82 Aligned_cols=106 Identities=10% Similarity=-0.016 Sum_probs=92.5
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 191 (480)
.+.....+..+|..+...|++++|+.+|++++...| ....++..+|.+|..+|+|++|+.+|++++++. |..+.
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~ 87 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMD----INEPR 87 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCcH
Confidence 344567788999999999999999999999997665 445788999999999999999999999999994 44456
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQN 224 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~ 224 (480)
++.++|.++...|+ +++|+.+|++++++....
T Consensus 88 ~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 88 FPFHAAECHLQLGD-LDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Confidence 78999999999999 999999999999986543
No 263
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.24 E-value=2.9e-10 Score=89.83 Aligned_cols=123 Identities=19% Similarity=0.205 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC-CCchH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN-KDDKL 114 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~-~~~~~ 114 (480)
.+.+++.+|.++...|++++|+.+|.++++. .+....++..+|.+|.. .|++++|+.++++++...+.. .+...
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL----DPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHH
Confidence 4678999999999999999999999999998 45556788999999555 499999999999999987754 33344
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK 166 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~ 166 (480)
...++.++|.+|...|++++|+.+|++++...+. ......++.+....+
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT---PDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHH
Confidence 4778899999999999999999999998876653 344556666655444
No 264
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.24 E-value=8.2e-12 Score=122.47 Aligned_cols=176 Identities=12% Similarity=0.161 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
.+.+++.+|..+...|+|++|+++|++|+++ .+....++.++|.+|.. .|++++|+.++++|+++.+. .
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~----~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~------~ 73 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKK------Y 73 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTT------C
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCC------C
Confidence 4566788899999999999999999999999 66678899999999555 49999999999999988432 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH--HHhhccHHHHHHHHH-----------HHHhhh
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT--YKDNKQYNLAVDYFN-----------KELRLH 182 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~--y~~~~~~~~A~~~~~-----------~al~~~ 182 (480)
..++.++|.+|..+|++++|+.+|++++...+... .++.+++.+ +..+|++++|++.++ +++++.
T Consensus 74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~ 151 (477)
T 1wao_1 74 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK--DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIE 151 (477)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT--THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccc
Confidence 56889999999999999999999999998776544 456667766 899999999999999 555553
Q ss_pred hcC----cH---HHHHHHHHHHHHHHHhCCch--HHHHHHHHHHHHHHHHcC
Q psy875 183 ARN----FP---EAVKTLGEIGDLYELQEKPF--ELVVSTHEKALDLARQNK 225 (480)
Q Consensus 183 ~~~----~~---~~~~~~~~l~~~~~~~~~~~--~~A~~~~~~al~~~~~~~ 225 (480)
+.. .+ ........+...+...+. . ..+...+.++.++.....
T Consensus 152 ~~~~~~~~~~~~itl~~l~~lie~l~~~~~-l~e~~v~~L~~~a~eil~~e~ 202 (477)
T 1wao_1 152 DEYSGPKLEDGKVTISFMKELMQWYKDQKK-LHRKCAYQILVQVKEVLSKLS 202 (477)
T ss_dssp TTCCSCCCGGGSCCHHHHHHHHHHHHTCCC-CCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccccccccccccHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHccCC
Confidence 321 11 112223334444444443 3 344446677766665543
No 265
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=2.7e-10 Score=113.80 Aligned_cols=184 Identities=9% Similarity=0.023 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHH------hhccHH-------HHHHHHHHHHH-hhhcCCCchHHHHHH
Q psy875 54 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL------QEKSFE-------IVQSTHEKALD-LARQNKDDKLIRTVM 119 (480)
Q Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~------~~~~~~-------~A~~~~~kAl~-~~~~~~~~~~~~~~~ 119 (480)
.+++..|++++.. .|....+|..+|..+.. ..|+++ +|+..|++|+. +.+. ...++
T Consensus 255 ~~a~~~y~~al~~----~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~------~~~l~ 324 (530)
T 2ooe_A 255 KRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK------NMLLY 324 (530)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS------CHHHH
T ss_pred HHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc------cHHHH
Confidence 4788899999998 45556778888888443 258877 89999999996 4332 25678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q psy875 120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL 199 (480)
Q Consensus 120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 199 (480)
..+|.++...|++++|...|++++...+.. ...++..+|.++...|++++|+..|+++++..+. ....+...+.+
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~----~~~~~~~~a~~ 399 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDART----RHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC----CTHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccccC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC----chHHHHHHHHH
Confidence 899999999999999999999999876542 2358899999999999999999999999987332 22334444444
Q ss_pred -HHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 200 -YELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 200 -~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
+...|+ +++|...|+++++.. +....++..++.++...|++++|...++++..
T Consensus 400 ~~~~~~~-~~~A~~~~e~al~~~------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 400 EYYCSKD-KSVAFKIFELGLKKY------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHTCC-HHHHHHHHHHHHHHH------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCC-hhHHHHHHHHHHHHC------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 335889 999999999999874 22346778889999999999999999999876
No 266
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.23 E-value=1.2e-10 Score=110.25 Aligned_cols=143 Identities=13% Similarity=0.110 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
...+..+..+|..++..|+|++|+.+|++++++ . +... .. ...+ ++. ...+
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~-~---~~~~-----------~~-~~~~-------~~~------~~~~ 270 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY-V---EGSR-----------AA-AEDA-------DGA------KLQP 270 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-H---HHHH-----------HH-SCHH-------HHG------GGHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-h---hcCc-----------cc-cChH-------HHH------HHHH
Confidence 345556666666666666666666666666665 1 1100 00 0111 111 1234
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL 193 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 193 (480)
....++.++|.+|..+|++++|+.++++++...+ ....+++++|.+|..+|++++|+.+|++++++.+ ....++
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P----~~~~~~ 344 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP--SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP----EDKAIQ 344 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CCHHHH
Confidence 5578899999999999999999999999998764 4568899999999999999999999999999943 345678
Q ss_pred HHHHHHHHHhCCchHHHHH
Q psy875 194 GEIGDLYELQEKPFELVVS 212 (480)
Q Consensus 194 ~~l~~~~~~~~~~~~~A~~ 212 (480)
..++.++..+++ ++++..
T Consensus 345 ~~l~~~~~~~~~-~~~a~k 362 (370)
T 1ihg_A 345 AELLKVKQKIKA-QKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHH
Confidence 888999988888 777654
No 267
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.22 E-value=7.6e-11 Score=99.19 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=102.2
Q ss_pred hccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH-HHhhcc
Q psy875 89 EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT-YKDNKQ 167 (480)
Q Consensus 89 ~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~-y~~~~~ 167 (480)
.|++++|+..+++++...+.. ..++..+|.+|...|++++|+.+|++++...+. ...++..+|.+ |...|+
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQN------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--NAELYAALATVLYYQASQ 94 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCC
Confidence 388999999999999875432 467899999999999999999999999977754 35788999999 889999
Q ss_pred H--HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875 168 Y--NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 168 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~ 222 (480)
+ ++|+.+++++++. .+....++..+|.++...|+ +++|+.+|++++++..
T Consensus 95 ~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 95 HMTAQTRAMIDKALAL----DSNEITALMLLASDAFMQAN-YAQAIELWQKVMDLNS 146 (177)
T ss_dssp CCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCC
T ss_pred cchHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHccc-HHHHHHHHHHHHhhCC
Confidence 9 9999999999998 34446789999999999999 9999999999987743
No 268
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.22 E-value=1.7e-10 Score=92.26 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 195 (480)
+..+..+|.++...|+|++|+.+|++++...+. ...++.++|.+|..+|++++|+.++++++++ .+....++..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~ 82 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALEL----DGQSVKAHFF 82 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CchhHHHHHH
Confidence 567889999999999999999999999977644 4578999999999999999999999999998 3445678999
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKALDLARQ 223 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~al~~~~~ 223 (480)
+|.++...|+ +++|+.+|++++.+...
T Consensus 83 l~~~~~~~~~-~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMES-YDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHChh
Confidence 9999999999 99999999999998765
No 269
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.22 E-value=2e-10 Score=92.84 Aligned_cols=99 Identities=10% Similarity=-0.030 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
...++.+|..+...|++++|+.+|++++.. .|.....|..+|.+|.. .|++++|+.+|++++.+.+.. .
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~------~ 86 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML----DHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMDINE------P 86 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC------T
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCC------c
Confidence 344444555555555555555555555544 33334444445555222 255555555555555443211 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccc
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSD 146 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~ 146 (480)
.++.++|.+|..+|++++|+.+|++++...
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 87 RFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 233444555555555555555555444433
No 270
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.20 E-value=1.5e-10 Score=109.55 Aligned_cols=128 Identities=19% Similarity=0.219 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc--------------ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD--------------LCKDLASCYISLAQTYKDNKQYNLAVDYFNKEL 179 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~--------------~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al 179 (480)
..+..+..+|..+...|+|++|+.+|++++... ..+....++.++|.+|..+|+|++|+.++++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 345678899999999999999999999998632 224557899999999999999999999999999
Q ss_pred hhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q psy875 180 RLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQ 252 (480)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 252 (480)
++ .+....+++.+|.+|..+|+ +++|+.+|++|+++. +....+...++.++..+++++++.+
T Consensus 301 ~~----~p~~~~a~~~lg~~~~~~g~-~~eA~~~l~~Al~l~------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 301 EI----DPSNTKALYRRAQGWQGLKE-YDQALADLKKAQEIA------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh----CchhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 44557889999999999999 999999999999872 3345677788999998888887764
No 271
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.19 E-value=3.4e-10 Score=88.49 Aligned_cols=118 Identities=21% Similarity=0.361 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
...++..+|.++...|++++|+.+|++++...+ ....++..+|.++...|++++|+.+++++++.. +....++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~ 81 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWY 81 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CccHHHHH
Confidence 356788999999999999999999999987654 335788999999999999999999999999873 33356788
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Q psy875 195 EIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD 245 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (480)
.+|.++...|+ +++|..++++++.. .+....++..++.++..+|
T Consensus 82 ~la~~~~~~~~-~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 82 NLGNAYYKQGD-YDEAIEYYQKALEL------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC-HHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhcc
Confidence 99999999999 99999999999876 2333456667777776654
No 272
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.19 E-value=9.6e-10 Score=115.73 Aligned_cols=172 Identities=12% Similarity=0.109 Sum_probs=101.5
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHH
Q psy875 43 LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSI 122 (480)
Q Consensus 43 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l 122 (480)
+|.++...|+|++|..+|+++... .. + +... ....+++++|.++++++ . ...+|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~-----~~-A-----~~VL-ie~i~nldrAiE~Aerv-------n----~p~vWsqL 1111 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVN-----TS-A-----VQVL-IEHIGNLDRAYEFAERC-------N----EPAVWSQL 1111 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCH-----HH-H-----HHHH-HHHHhhHHHHHHHHHhc-------C----CHHHHHHH
Confidence 688899999999999999886422 00 0 0111 21224444444444322 0 02344455
Q ss_pred HHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc------------------
Q psy875 123 KKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR------------------ 184 (480)
Q Consensus 123 ~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~------------------ 184 (480)
|..+...|++++|+.+|.++ +....|..+|.++.+.|+|++|+++|..|.+..+.
T Consensus 1112 AKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHH
Confidence 55555555555555555443 11233444555555555555555555443322100
Q ss_pred ------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875 185 ------NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK 258 (480)
Q Consensus 185 ------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 258 (480)
..+. ...+..+|..++..|+ |++|..+|.++ ..+..++.++.++|++++|.+.++++.
T Consensus 1185 ele~fI~~~n-~ad~~~iGd~le~eg~-YeeA~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1185 ELEEFINGPN-NAHIQQVGDRCYDEKM-YDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 0111 1346679999999999 99999999886 366789999999999999999998885
Q ss_pred HH
Q psy875 259 SL 260 (480)
Q Consensus 259 ~l 260 (480)
..
T Consensus 1249 n~ 1250 (1630)
T 1xi4_A 1249 ST 1250 (1630)
T ss_pred CH
Confidence 43
No 273
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.18 E-value=4.1e-10 Score=88.91 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC---cHHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN---FPEAVK 191 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~ 191 (480)
.+.++..+|.++...|++++|+.+|++++...+ ....++.++|.+|...|++++|+.+++++++..+.. .+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 356788999999999999999999999987664 345788999999999999999999999999985542 233378
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
++..+|.++...|+ +++|..+|+++++.
T Consensus 81 ~~~~la~~~~~~~~-~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 81 AYARIGNSYFKEEK-YKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-HHHHHHHHHHHHHh
Confidence 89999999999999 99999999999886
No 274
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.17 E-value=9e-10 Score=86.02 Aligned_cols=116 Identities=22% Similarity=0.374 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHH
Q psy875 75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC 154 (480)
Q Consensus 75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 154 (480)
..++..+|.+|... |++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+. ...+
T Consensus 9 ~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ 79 (125)
T 1na0_A 9 AEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEA 79 (125)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHH
Confidence 44556666663333 66666666666666553211 345566666677777777777777666654432 2355
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh
Q psy875 155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ 203 (480)
Q Consensus 155 ~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~ 203 (480)
+..+|.+|...|++++|+.+++++++.. +....++..+|.++...
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHhc
Confidence 6667777777777777777777776662 23344555666665544
No 275
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.17 E-value=6.3e-10 Score=88.94 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHH
Q psy875 75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC 154 (480)
Q Consensus 75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 154 (480)
+..+..+|.+|+.. |+|++|+.+|++++...+.. ..++.++|.+|..+|++++|+.+|++++...+ ....+
T Consensus 9 ~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~ 79 (137)
T 3q49_B 9 AQELKEQGNRLFVG-RKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKA 79 (137)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred HHHHHHHHHHHHHh-CcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--hhHHH
Confidence 33444455553222 55555555555555443211 23444555555555555555555555544332 22344
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 155 YISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 155 ~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
+.++|.+|..+|++++|+.+|++++++
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 555555555555555555555555554
No 276
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.17 E-value=8.3e-10 Score=106.01 Aligned_cols=123 Identities=13% Similarity=0.079 Sum_probs=106.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc----CcHHHH
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR----NFPEAV 190 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~ 190 (480)
+...-+..+|+|++|+..+++++.+... +..+.++.+||.+|..+|+|++|+.++++++++... ++|..+
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3344566789999999999999976433 567899999999999999999999999999988554 789999
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHc
Q psy875 191 KTLGEIGDLYELQEKPFELVVSTHEKALDLARQN--KDDKLIRTVMRSMKKLYKKH 244 (480)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~ 244 (480)
..+++||.+|..+|+ +++|+.+|++|+++.+.. .+.+....++.+|+.+...+
T Consensus 372 ~~l~nLa~~~~~~g~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGM-FPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999988874 57888889988888877544
No 277
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.16 E-value=2.1e-10 Score=107.32 Aligned_cols=158 Identities=11% Similarity=0.058 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
....+..+..+|..++..|+|++|+.+|++++.+ .+... . +...+++.++...+
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~----~p~~~--------~-~~~~~~~~~~~~~l------------- 228 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAY----MGDDF--------M-FQLYGKYQDMALAV------------- 228 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH----SCHHH--------H-HTCCHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----hccch--------h-hhhcccHHHHHHHH-------------
Confidence 3456788999999999999999999999999998 33322 1 22234555443322
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT 192 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 192 (480)
...++.++|.+|..+|+|++|+.+|++++...+ ....+++++|.+|..+|+|++|+.+|++++++ .+....+
T Consensus 229 --~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l----~p~~~~a 300 (338)
T 2if4_A 229 --KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE--KNPKALFRRGKAKAELGQMDSARDDFRKAQKY----APDDKAI 300 (338)
T ss_dssp --HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHH
Confidence 123678889999999999999999998887654 44578888999999999999999999998887 3445667
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc
Q psy875 193 LGEIGDLYELQEKPFELVVSTHEKALDLARQN 224 (480)
Q Consensus 193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~ 224 (480)
+..++.+........+++...|.+++......
T Consensus 301 ~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 301 RRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 77788875544432788888888888766543
No 278
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.16 E-value=7.3e-10 Score=106.15 Aligned_cols=113 Identities=12% Similarity=0.027 Sum_probs=97.6
Q ss_pred HHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc----CcHHHHHHHH
Q psy875 125 LYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR----NFPEAVKTLG 194 (480)
Q Consensus 125 ~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~ 194 (480)
.....|+|++|+..|++++.+... +.++.++.+||.+|..+|+|++|+.++++++++... ++|..+..+.
T Consensus 307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 334578999999999999876433 667899999999999999999999999999998654 7999999999
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHH
Q psy875 195 EIGDLYELQEKPFELVVSTHEKALDLARQN--KDDKLIRTVMRSMK 238 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~ 238 (480)
+||.+|..+|+ |++|+.+|++|+++.+.. .+.+....+..+|.
T Consensus 387 nLa~~~~~qg~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 387 KLGRLYMGLEN-KAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccC-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 99999999999 999999999999988764 46777777666554
No 279
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.15 E-value=8e-11 Score=104.82 Aligned_cols=206 Identities=6% Similarity=-0.110 Sum_probs=150.2
Q ss_pred hHHHhhccchhhhhhhHHHHhhhhhhhhHHHHHHHHHHHH-------HHHHhccccHHHHHHHHHHHHHHh-------hc
Q psy875 4 KIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISL-------AQTYKDNKQYNLAVDYFNKELRLH-------AR 69 (480)
Q Consensus 4 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-------g~~~~~~~~~~~A~~~~~~al~~~-------~~ 69 (480)
+-.|..|+. +..-......-.+.+.....+....++..+ +.+....+++.+++..+++++.+. ..
T Consensus 8 ~~~~~~~~~-~~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 8 ASLFESAVS-MLPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHHH-HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHHHhc-ccCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 445666666 222111222233444555667788999999 899999999999999999999863 00
Q ss_pred -cC---------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy875 70 -NF---------PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSEL 139 (480)
Q Consensus 70 -~~---------~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~ 139 (480)
.. .........++.+ +...|+|++|...|...+.. .+ ... +.+.+|.++...++|++|+.+|
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~-L~~~g~y~eA~~~l~~~~~~-----~p-~~~-~~~~~a~l~~~~~r~~dA~~~l 158 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAAC-EAAQGNYADAMEALEAAPVA-----GS-EHL-VAWMKAVVYGAAERWTDVIDQV 158 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHH-HHHHTCHHHHHHHHTSSCCT-----TC-HHH-HHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcccccccccCCHhHHHHHHHHH-HHHCCCHHHHHHHHHHHHhc-----CC-chH-HHHHHHHHHHHcCCHHHHHHHH
Confidence 00 0123344556778 55569999999888776542 12 223 7789999999999999999999
Q ss_pred HHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875 140 HTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD 219 (480)
Q Consensus 140 ~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~ 219 (480)
+++...........+++++|.++..+|++++|+.+|++++.-. .++.....+++++|.++..+|+ .++|...|++++.
T Consensus 159 ~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr-~deA~~~l~~a~a 236 (282)
T 4f3v_A 159 KSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGN-ESAAVALLEWLQT 236 (282)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred HHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Confidence 9776543211224689999999999999999999999998431 1122267789999999999999 9999999999987
Q ss_pred H
Q psy875 220 L 220 (480)
Q Consensus 220 ~ 220 (480)
.
T Consensus 237 ~ 237 (282)
T 4f3v_A 237 T 237 (282)
T ss_dssp H
T ss_pred c
Confidence 6
No 280
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.15 E-value=3.3e-11 Score=113.58 Aligned_cols=181 Identities=17% Similarity=0.095 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc-----
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD----- 112 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~----- 112 (480)
.++..+|.++...|++++|++.|.++-. ...|..++.. ....|+|++|+.+++.+.+..+...-.
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~D---------~~~y~~V~~~-ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~ 102 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKADD---------PSSYMEVVQA-ANTSGNWEELVKYLQMARKKARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCC---------HHHHHHHHHH-HHhCCCHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 4788999999999999999999976422 2255666777 445588999998888887532110000
Q ss_pred -----------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHH
Q psy875 113 -----------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYF 175 (480)
Q Consensus 113 -----------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~ 175 (480)
+. ..++.++|..+...|+|++|..+|.++ ..+..+|.++.++|+|++|++.+
T Consensus 103 ~Y~Klg~l~e~e~f~~~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 103 ALAKTNRLAELEEFINGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp ------CHHHHTTTTTCC-----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHcCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHH
Confidence 00 013445555555555555555555543 12444555555555555555555
Q ss_pred HHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy875 176 NKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKT 255 (480)
Q Consensus 176 ~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 255 (480)
.++. .+.+|..++.++...|+ ++.|..+... ....+. -+..+..+|.+.|++++|..+++
T Consensus 172 ~KA~---------~~~~Wk~v~~aCv~~~e-f~lA~~~~l~-------L~~~ad---~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 172 RKAN---------STRTWKEVCFACVDGKE-FRLAQMCGLH-------IVVHAD---ELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHHT---------CHHHHHHHHHHHHHTTC-HHHHHHTTTT-------TTTCHH---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcC---------CchhHHHHHHHHHHcCc-HHHHHHHHHH-------HHhCHh---hHHHHHHHHHHCCCHHHHHHHHH
Confidence 5551 12344555555555555 5555333322 111121 13357789999999999999998
Q ss_pred HHHH
Q psy875 256 ELKS 259 (480)
Q Consensus 256 ~~~~ 259 (480)
.+..
T Consensus 232 ~aL~ 235 (449)
T 1b89_A 232 AALG 235 (449)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 7754
No 281
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.14 E-value=8.6e-12 Score=122.34 Aligned_cols=135 Identities=12% Similarity=0.081 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
.+.++.++|..+...|+|++|+.+|++++...+ ....++.++|.+|..+|+|++|+.++++++++ .+..+.++.
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~~~~~~ 78 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIEL----DKKYIKGYY 78 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHH
Confidence 345567788999999999999999999997764 44688999999999999999999999999998 445577899
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHHHHH
Q psy875 195 EIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKL--YKKHDKFTELEQIKTELKSLEE 262 (480)
Q Consensus 195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~l~~ 262 (480)
++|.+|..+|+ +++|+.+|++++++.. ....++..++.+ +.++|++++|...+++...+..
T Consensus 79 ~lg~~~~~~g~-~~eA~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~ 141 (477)
T 1wao_1 79 RRAASNMALGK-FRAALRDYETVVKVKP------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 141 (477)
T ss_dssp HHHHHHHHHTC-HHHHHHHHHHHHHHST------TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTT
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHh
Confidence 99999999999 9999999999998732 222345566666 8889999999999876444333
No 282
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.13 E-value=2.2e-09 Score=82.89 Aligned_cols=99 Identities=9% Similarity=0.064 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
+..++.+|..+...|++++|+.+|++++.. .+....++..+|.+|.. .|++++|+.++++++...+. ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~------~~ 72 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPD------WG 72 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTT------CH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcc------cH
Confidence 344555666666666666666666666555 33334455555665333 35666666666666554321 12
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccc
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSD 146 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~ 146 (480)
.++.++|.+|...|++++|+.+|++++...
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 344555555555555555555555555444
No 283
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.13 E-value=4.5e-10 Score=107.59 Aligned_cols=110 Identities=12% Similarity=0.089 Sum_probs=94.8
Q ss_pred hhccHHHHHHHHHHHHHhhhc--CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHH
Q psy875 88 QEKSFEIVQSTHEKALDLARQ--NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLA 159 (480)
Q Consensus 88 ~~~~~~~A~~~~~kAl~~~~~--~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la 159 (480)
..|+|++|+..+++++.+..+ .++++..+.++.+||.+|..+|+|++|+.++++++.+... |.++..+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 348899999999999987654 4567899999999999999999999999999999876543 77899999999
Q ss_pred HHHHhhccHHHHHHHHHHHHhhhhc----CcHHHHHHHHHHH
Q psy875 160 QTYKDNKQYNLAVDYFNKELRLHAR----NFPEAVKTLGEIG 197 (480)
Q Consensus 160 ~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~l~ 197 (480)
.+|..+|+|++|+.+|++|+++... ++|.......+|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999998654 6777776666553
No 284
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.12 E-value=7.2e-10 Score=85.65 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 195 (480)
+..+..+|..+...|++++|+.+|++++...+. ...++..+|.+|...|++++|+.+++++++.. +....++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK----PDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC----cccHHHHHH
Confidence 457789999999999999999999999876643 35789999999999999999999999999983 344678899
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 196 IGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 196 l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
+|.++...|+ +++|..+++++++.
T Consensus 78 ~a~~~~~~~~-~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 78 KAAALEFLNR-FEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHTT
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHc
Confidence 9999999999 99999999999865
No 285
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.12 E-value=2.9e-10 Score=88.94 Aligned_cols=97 Identities=15% Similarity=0.068 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG 197 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~ 197 (480)
.+..+|..+...|++++|+..|++++...| ....++..+|.++..+|++++|+.+|++++++ .|....++..+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----~P~~~~~~~~la 92 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVHAALA 92 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHH
Confidence 357899999999999999999999997765 44578999999999999999999999999999 444567899999
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHH
Q psy875 198 DLYELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~al~~~ 221 (480)
.++...|+ +++|+..+++++++.
T Consensus 93 ~~~~~~g~-~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 93 VSHTNEHN-ANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHC--
T ss_pred HHHHHcCC-HHHHHHHHHHHHHhC
Confidence 99999999 999999999998763
No 286
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.11 E-value=8.2e-10 Score=106.05 Aligned_cols=121 Identities=7% Similarity=-0.044 Sum_probs=103.7
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhhhc--CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------ccHH
Q psy875 81 IGDLYELQEKSFEIVQSTHEKALDLARQ--NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLA 152 (480)
Q Consensus 81 lg~~y~~~~~~~~~A~~~~~kAl~~~~~--~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~ 152 (480)
+..+ ..+ |+|++|+..+++++.+..+ .++++..+.++.++|.+|..+|+|++|+.++++++.+... |.++
T Consensus 294 ie~~-~~~-g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 294 IEEL-KAH-WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHH-HHT-TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHH-Hhh-ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3444 555 8999999999999987544 3466889999999999999999999999999999876433 6789
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc----CcHHHHHHHHHHHHHHHHh
Q psy875 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHAR----NFPEAVKTLGEIGDLYELQ 203 (480)
Q Consensus 153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~~ 203 (480)
..+++||.+|..+|++++|+.+|++|+++... ++|....++.+|+.+...+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998654 7888888888888887654
No 287
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=8.2e-10 Score=89.40 Aligned_cols=102 Identities=17% Similarity=0.086 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT 192 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 192 (480)
.....+..+|..+...|++++|+.+|++++...+.. ....++.++|.+|...|++++|+.+++++++..+ ....+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG----GDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS----CCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc----cCHHH
Confidence 346778899999999999999999999999876543 2368899999999999999999999999999833 33678
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 193 LGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
+..+|.++...|+ +++|+.+|++++.+
T Consensus 102 ~~~~a~~~~~~~~-~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGR-LDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHc
Confidence 8999999999999 99999999999876
No 288
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.11 E-value=6e-10 Score=87.14 Aligned_cols=93 Identities=13% Similarity=0.045 Sum_probs=42.2
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875 41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR 120 (480)
Q Consensus 41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~ 120 (480)
+.+|..+...|++++|+..|+++++. .|....++..+|.+| ...|++++|+.+|++|+++.+.. ..++.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~P~~------~~~~~ 89 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK----EPEREEAWRSLGLTQ-AENEKDGLAIIALNHARMLDPKD------IAVHA 89 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence 34444444455555555555555444 333344444445552 22245555555555554442211 22344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhc
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLS 144 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~ 144 (480)
++|.+|...|++++|+.+|++++.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 90 ALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 289
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.10 E-value=1.1e-09 Score=86.44 Aligned_cols=116 Identities=13% Similarity=0.051 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 196 (480)
++..+|..+...|++++|+..|++++...+.. ....++..+|.+|...|+|++|+.+|+++++..+.+ +....++..+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH-DKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC-cccHHHHHHH
Confidence 45788999999999999999999999876653 335788999999999999999999999999985432 3347789999
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy875 197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMK 238 (480)
Q Consensus 197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 238 (480)
|.++..+|+ +++|+.+|++++... ++.+....+...+.
T Consensus 83 a~~~~~~g~-~~~A~~~~~~~~~~~---p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEGK-NTEAQQTLQQVATQY---PGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHS---TTSHHHHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHHC---CCChHHHHHHHHHH
Confidence 999999999 999999999998763 33444334433333
No 290
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.10 E-value=2.1e-09 Score=84.80 Aligned_cols=105 Identities=14% Similarity=0.062 Sum_probs=63.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV 118 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~ 118 (480)
+++.+|..+...|+|++|+..|+++++. .++.+....++..+|.+|+.. |++++|+.+|++++...+. ......+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~p~---~~~~~~~ 78 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-YPNGVYTPNALYWLGESYYAT-RNFQLAEAQFRDLVSRYPT---HDKAAGG 78 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT---STTHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-CCCCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHCCC---CcccHHH
Confidence 4566666777777777777777777666 333444445666667764333 6777777777776665432 2223445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccccc
Q psy875 119 MRSIKKLYKKHDNLDSACSELHTVLSSDLC 148 (480)
Q Consensus 119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~ 148 (480)
+..+|.+|..+|++++|+.+|++++...|.
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 666666666666666666666666655543
No 291
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.08 E-value=1.8e-10 Score=107.73 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH---------------HHHHHHHHHHHHhhccHHHHHHHHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL---------------ASCYISLAQTYKDNKQYNLAVDYFNK 177 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~---------------~~~~~~la~~y~~~~~~~~A~~~~~~ 177 (480)
...+..+..+|..+...|+|++|+.+|++++...+.... ..++.++|.+|..+|+|++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345677889999999999999999999999876654210 13899999999999999999999999
Q ss_pred HHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHcCChHHHHHHHHH
Q psy875 178 ELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLY-KKHDKFTELEQIKTE 256 (480)
Q Consensus 178 al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~ 256 (480)
++++ .+....+++++|.+|..+|+ +++|+.+|++++++. +....++..|+.+. ...+..+++...+++
T Consensus 256 al~~----~p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~l~------p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~ 324 (338)
T 2if4_A 256 VLTE----EEKNPKALFRRGKAKAELGQ-MDSARDDFRKAQKYA------PDDKAIRRELRALAEQEKALYQKQKEMYKG 324 (338)
T ss_dssp HHHH----CTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC--------------------------------------
T ss_pred HHHh----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 44557889999999999999 999999999998873 33455666777774 445566777777766
Q ss_pred HHH
Q psy875 257 LKS 259 (480)
Q Consensus 257 ~~~ 259 (480)
+..
T Consensus 325 ~l~ 327 (338)
T 2if4_A 325 IFK 327 (338)
T ss_dssp ---
T ss_pred hhC
Confidence 654
No 292
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2.8e-09 Score=86.19 Aligned_cols=87 Identities=15% Similarity=0.079 Sum_probs=39.1
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH
Q psy875 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN 169 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~ 169 (480)
|++++|+.+|++++...+ +......++.++|.+|...|++++|+.++++++...+. ...++..+|.+|..+|+++
T Consensus 42 ~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~ 116 (148)
T 2dba_A 42 GDYGGALAAYTQALGLDA---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--DVKALYRRSQALEKLGRLD 116 (148)
T ss_dssp TCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CHHHHHHHHHHHHHHTCHH
T ss_pred CCHHHHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--CHHHHHHHHHHHHHcCCHH
Confidence 444444444444443322 12222334444444444444555555444444433322 2344445555555555555
Q ss_pred HHHHHHHHHHhh
Q psy875 170 LAVDYFNKELRL 181 (480)
Q Consensus 170 ~A~~~~~~al~~ 181 (480)
+|+.+|++++++
T Consensus 117 ~A~~~~~~al~~ 128 (148)
T 2dba_A 117 QAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 555555555544
No 293
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.03 E-value=1.6e-09 Score=82.84 Aligned_cols=101 Identities=14% Similarity=0.069 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT 117 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~ 117 (480)
.+++.+|.++...|++++|+.+|+++++. .+....++..+|.+|... |++++|+.++++++...+. .....
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~----~~~~~ 77 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL----DPEESKYWLMKGKALYNL-ERYEEAVDCYNYVINVIED----EYNKD 77 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSCC----TTCHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCcc----cchHH
Confidence 34566777777777777777777777777 444455667777774443 7777777777777766433 01134
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHhcccc
Q psy875 118 VMRSIKKLYKKH-DNLDSACSELHTVLSSDL 147 (480)
Q Consensus 118 ~~~~l~~~y~~~-~~~~~A~~~~~~~l~~~~ 147 (480)
++.++|.+|..+ |++++|++++++++...+
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 667777777777 777777777777765554
No 294
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.01 E-value=6.9e-08 Score=88.84 Aligned_cols=206 Identities=12% Similarity=0.024 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK-SFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
..++..+..+....+..++|++++.+++.+ .+....+|+..+.+ ...++ .+++++.++.+++...++.
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~----nP~~ytaWn~R~~i-L~~l~~~l~eEL~~~~~~L~~nPKn------ 122 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRM----NPAHYTVWQYRFSL-LTSLNKSLEDELRLMNEFAVQNLKS------ 122 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHTTCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----CchhHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHhCCCc------
Confidence 344444555555555556677777776666 55556666666666 34445 4666766666666554332
Q ss_pred HHHHHHHHHHHHhc-C-ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH--------HHHHHHHHHHhhhhcC
Q psy875 116 RTVMRSIKKLYKKH-D-NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN--------LAVDYFNKELRLHARN 185 (480)
Q Consensus 116 ~~~~~~l~~~y~~~-~-~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~--------~A~~~~~~al~~~~~~ 185 (480)
..++...+.+...+ + ++++++.++.+++...+.. ..++...+.+....+.++ +++++++++++.
T Consensus 123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN--y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---- 196 (349)
T 3q7a_A 123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN--YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---- 196 (349)
T ss_dssp HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh----
Confidence 34555556666655 5 6666666666666554432 245555566666666555 666666666665
Q ss_pred cHHHHHHHHHHHHHHHHhCC------chHHHHHHHHHHHHH--------------HHHcCCc------------------
Q psy875 186 FPEAVKTLGEIGDLYELQEK------PFELVVSTHEKALDL--------------ARQNKDD------------------ 227 (480)
Q Consensus 186 ~~~~~~~~~~l~~~~~~~~~------~~~~A~~~~~~al~~--------------~~~~~~~------------------ 227 (480)
.+....+|.+.+.+....++ .++++++++++++.+ ....+..
T Consensus 197 dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 197 DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNP 276 (349)
T ss_dssp CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----
T ss_pred CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence 33334556666666655553 035566666665521 1111110
Q ss_pred ----------------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 228 ----------------------KLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 228 ----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
..-..++..|+++|..+|+.++|.+.++...+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 12344677899999999999999988887654
No 295
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.00 E-value=1.4e-09 Score=83.21 Aligned_cols=102 Identities=12% Similarity=-0.039 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHH
Q psy875 75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC 154 (480)
Q Consensus 75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 154 (480)
..++..+|.+| ...|++++|+.++++++...+.. ..++.++|.+|...|++++|+.+|++++...+......+
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 6 PEEYYLEGVLQ-YDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp TTGGGGHHHHH-HSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred HHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH
Confidence 34556778884 44488888888888888764322 346778888888888888888888888766544114567
Q ss_pred HHHHHHHHHhh-ccHHHHHHHHHHHHhhhh
Q psy875 155 YISLAQTYKDN-KQYNLAVDYFNKELRLHA 183 (480)
Q Consensus 155 ~~~la~~y~~~-~~~~~A~~~~~~al~~~~ 183 (480)
+..+|.+|... |++++|++++++++...+
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 78888888888 888888888888776643
No 296
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.99 E-value=1e-09 Score=85.21 Aligned_cols=92 Identities=11% Similarity=0.017 Sum_probs=67.8
Q ss_pred hccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccH
Q psy875 89 EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQY 168 (480)
Q Consensus 89 ~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~ 168 (480)
.|++++|+.+|++|+++. .+.+....++.++|.+|..+|++++|+.+|++++...|.. ..++.++|.+|..+|++
T Consensus 3 ~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--QALRVFYAMVLYNLGRY 77 (117)
T ss_dssp ----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCH
T ss_pred CCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCCH
Confidence 377888888888888752 1234556778888888888888888888888888766543 57788888888888888
Q ss_pred HHHHHHHHHHHhhhhcC
Q psy875 169 NLAVDYFNKELRLHARN 185 (480)
Q Consensus 169 ~~A~~~~~~al~~~~~~ 185 (480)
++|+.+++++++..+.+
T Consensus 78 ~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 78 EQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 88888888888875443
No 297
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.99 E-value=9.6e-10 Score=85.41 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=74.2
Q ss_pred hcCChHHHHHHHHHHhcccc-cccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCc
Q psy875 128 KHDNLDSACSELHTVLSSDL-CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKP 206 (480)
Q Consensus 128 ~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (480)
.+|++++|+.+|++++...+ .+....++.++|.+|..+|+|++|+.+|++++++. |....++.++|.++...|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~- 76 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF----PNHQALRVFYAMVLYNLGR- 76 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTC-
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHcCC-
Confidence 46899999999999997631 25567889999999999999999999999999993 4447789999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy875 207 FELVVSTHEKALDLA 221 (480)
Q Consensus 207 ~~~A~~~~~~al~~~ 221 (480)
+++|+.++++++...
T Consensus 77 ~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 77 YEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998763
No 298
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.98 E-value=3.2e-10 Score=106.91 Aligned_cols=190 Identities=14% Similarity=0.193 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh---------------hc---------cCchHHHHHHHHHHHHHHhhccHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLH---------------AR---------NFPEAVKTLGEIGDLYELQEKSFE 93 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------------~~---------~~~~~~~~~~~lg~~y~~~~~~~~ 93 (480)
..|..++..+...|+|++|+++++.+++.. .+ ..+. ..+|..+|..|+.. |.|+
T Consensus 62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn-~~a~~~IGd~~~~~-g~ye 139 (449)
T 1b89_A 62 SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPN-NAHIQQVGDRCYDE-KMYD 139 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTTCC------------------CTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCc-HHHHHHHHHHHHHc-CCHH
Confidence 367788888888999999999888887431 00 0111 13778888885555 9999
Q ss_pred HHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHH-----------------
Q psy875 94 IVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI----------------- 156 (480)
Q Consensus 94 ~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~----------------- 156 (480)
+|+.+|.++ ..+..+|.++.++|+|++|++.|+++.....-.....++.
T Consensus 140 eA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~ 205 (449)
T 1b89_A 140 AAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV 205 (449)
T ss_dssp THHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTT
T ss_pred HHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 999999866 3567899999999999999999999842211011111122
Q ss_pred ------HHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHcCCcH
Q psy875 157 ------SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ--EKPFELVVSTHEKALDLARQNKDDK 228 (480)
Q Consensus 157 ------~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~ 228 (480)
.+...|.+.|++++|+.++++++.+ .+....++..+|.+|.+- ++ ..++++.|.+.+.+ ++
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l----e~ah~~~ftel~il~~ky~p~k-~~ehl~~~~~~ini------~k 274 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGL----ERAHMGMFTELAILYSKFKPQK-MREHLELFWSRVNI------PK 274 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----TTCCHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCH------HH
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhcC------cH
Confidence 2335666666666666666666655 233344455555544332 22 33333333322222 33
Q ss_pred -----HHHHHHHHHHHHHHHcCChHHHHHHH
Q psy875 229 -----LIRTVMRSMKKLYKKHDKFTELEQIK 254 (480)
Q Consensus 229 -----~~~~~~~~l~~~~~~~g~~~~A~~~~ 254 (480)
.....+..+..+|...++++.|....
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 23345567888888899998887655
No 299
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.98 E-value=2.1e-09 Score=86.32 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=64.0
Q ss_pred ccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccH----------HHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875 49 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSF----------EIVQSTHEKALDLARQNKDDKLIRTV 118 (480)
Q Consensus 49 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~----------~~A~~~~~kAl~~~~~~~~~~~~~~~ 118 (480)
+.++|++|++.+++++++ .|..+.+|+++|.+ +..++++ ++|+..|++|+++.+. ...+
T Consensus 14 r~~~feeA~~~~~~Ai~l----~P~~aea~~n~G~~-l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------~~~A 82 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS----NPLDADNLTRWGGV-LLELSQFHSISDAKQMIQEAITKFEEALLIDPK------KDEA 82 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHH
T ss_pred HHhHHHHHHHHHHHHHHH----CCCCHHHHHHHHHH-HHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------cHHH
Confidence 457899999999999999 78888899999999 5555765 4777777777777443 2556
Q ss_pred HHHHHHHHHhcC-----------ChHHHHHHHHHHhcccc
Q psy875 119 MRSIKKLYKKHD-----------NLDSACSELHTVLSSDL 147 (480)
Q Consensus 119 ~~~l~~~y~~~~-----------~~~~A~~~~~~~l~~~~ 147 (480)
++++|.+|..+| ++++|+.+|++++.+.|
T Consensus 83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 777777777664 55555555555555544
No 300
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.97 E-value=1.3e-07 Score=86.66 Aligned_cols=201 Identities=8% Similarity=0.015 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHhcccc----------HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHH
Q psy875 36 LASCYISLAQTYKDNKQ----------YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK--SFEIVQSTHEKAL 103 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~--~~~~A~~~~~kAl 103 (480)
...+++..+.+....+. +++++.++.+++.. .|....+|+..+.+ ...++ .+++++.++.+++
T Consensus 63 ~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~----~PKny~aW~hR~wl-L~~l~~~~~~~EL~~~~k~l 137 (331)
T 3dss_A 63 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWL-LSRLPEPNWARELELCARFL 137 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHHCSSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHH-HhccCcccHHHHHHHHHHHH
Confidence 34567777777766655 78999999999988 77778888999999 55557 4899999999999
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh--------------ccH
Q psy875 104 DLARQNKDDKLIRTVMRSIKKLYKKHDN-LDSACSELHTVLSSDLCKDLASCYISLAQTYKDN--------------KQY 168 (480)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~y~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~--------------~~~ 168 (480)
+..++. ..++...+.+....|. ++++++++.+++...+.. ..++...+.+.... +.+
T Consensus 138 ~~dprN------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N--~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~ 209 (331)
T 3dss_A 138 EADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLPQLHPQPDSGPQGRLPENVL 209 (331)
T ss_dssp HHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHHSCCC------CCCHHHH
T ss_pred HhCCCC------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHhhhccccccccccchHHH
Confidence 875433 4577888899999998 599999999999776544 47788888888776 679
Q ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh-----------CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy875 169 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ-----------EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSM 237 (480)
Q Consensus 169 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 237 (480)
+++++++.+++.+. |....+|+.+..++... +. ++++++++++.+++.. +. ..++..+
T Consensus 210 ~eEle~~~~ai~~~----P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~-l~~el~~~~elle~~p---d~---~w~l~~~ 278 (331)
T 3dss_A 210 LKELELVQNAFFTD----PNDQSAWFYHRWLLGAGSGRCELSVEKSTV-LQSELESCKELQELEP---EN---KWCLLTI 278 (331)
T ss_dssp HHHHHHHHHHHHHS----TTCHHHHHHHHHHHHSSSCGGGCCHHHHHH-HHHHHHHHHHHHHHCT---TC---HHHHHHH
T ss_pred HHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhccCccccchHHHHH-HHHHHHHHHHHHhhCc---cc---chHHHHH
Confidence 99999999999994 44456676555555444 45 7888888888887743 22 3333333
Q ss_pred HHHH---HHcCChHHHHHHHHHHHHH
Q psy875 238 KKLY---KKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 238 ~~~~---~~~g~~~~A~~~~~~~~~l 260 (480)
+.+. ...|..++...++.+..++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3332 2456777888888777664
No 301
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.97 E-value=9e-09 Score=102.69 Aligned_cols=176 Identities=7% Similarity=-0.056 Sum_probs=145.1
Q ss_pred cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhcc----------HHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875 50 NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS----------FEIVQSTHEKALDLARQNKDDKLIRTVM 119 (480)
Q Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~----------~~~A~~~~~kAl~~~~~~~~~~~~~~~~ 119 (480)
....++|++.+.+++.+ .|....+|+..+.+ ...+++ +++++.++.+++...++. ..++
T Consensus 42 ~~~~eeal~~~~~~l~~----nP~~~taW~~R~~~-l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~------y~aW 110 (567)
T 1dce_A 42 GELDESVLELTSQILGA----NPDFATLWNCRREV-LQHLETEKSPEESAALVKAELGFLESCLRVNPKS------YGTW 110 (567)
T ss_dssp TCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHH
T ss_pred CCCCHHHHHHHHHHHHH----CchhHHHHHHHHHH-HHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC------HHHH
Confidence 34456889999999999 88888899999999 555577 999999999999875543 5688
Q ss_pred HHHHHHHHhcC--ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875 120 RSIKKLYKKHD--NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK-QYNLAVDYFNKELRLHARNFPEAVKTLGEI 196 (480)
Q Consensus 120 ~~l~~~y~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 196 (480)
...+.+...++ ++++|++++.++++..+.. ..++...+.+....| .+++++++++++++. .+....+|.+.
T Consensus 111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N--~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~----~p~n~saW~~r 184 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWARELELCARFLEADERN--FHCWDYRRFVAAQAAVAPAEELAFTDSLITR----NFSNYSSWHYR 184 (567)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT----TCCCHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHhhcccc--ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH----CCCCccHHHHH
Confidence 89999999999 6799999999999877544 477888999999999 999999999999988 44556789999
Q ss_pred HHHHHHh--------------CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH
Q psy875 197 GDLYELQ--------------EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE 249 (480)
Q Consensus 197 ~~~~~~~--------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (480)
+.++... +. +++|++++.+|+.+ .|....++..++.++.+.+++++
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~-~~eel~~~~~ai~~------~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENV-LLKELELVQNAFFT------DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHH-HHHHHHHHHHHHHH------CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHhhcccccccccccccHHH-HHHHHHHHHHHHhh------CCCCccHHHHHHHHHhcCCCccc
Confidence 9998885 56 79999999999887 33344567777888888877554
No 302
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.97 E-value=3.9e-09 Score=84.81 Aligned_cols=90 Identities=11% Similarity=0.183 Sum_probs=76.2
Q ss_pred HhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhcccccccHHHHHH
Q psy875 87 LQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNL----------DSACSELHTVLSSDLCKDLASCYI 156 (480)
Q Consensus 87 ~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~----------~~A~~~~~~~l~~~~~~~~~~~~~ 156 (480)
.+.+.|++|++.+++|+++.+.. ..++.++|.++..++++ ++|+..|++++.+.| ....+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~ 84 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHH
Confidence 34578999999999999986543 66888999999999875 599999999998875 4568899
Q ss_pred HHHHHHHhhc-----------cHHHHHHHHHHHHhhhhc
Q psy875 157 SLAQTYKDNK-----------QYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 157 ~la~~y~~~~-----------~~~~A~~~~~~al~~~~~ 184 (480)
++|.+|..+| ++++|+.+|++|+++.++
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 9999999885 899999999999999443
No 303
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.95 E-value=8.6e-10 Score=84.49 Aligned_cols=100 Identities=6% Similarity=0.021 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR 116 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~ 116 (480)
+.+++.+|.++...|+|++|+++|++++++ .+....++.++|.+|. ..|++++|+.++++++.+.+..++.....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 78 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA----QPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 457788888888888888888888888888 5555677788888844 44888888888888888776655555567
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHT 141 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~ 141 (480)
.++..+|.++..+|+++.|+..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 7788888888888887777665554
No 304
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.94 E-value=8.3e-08 Score=87.37 Aligned_cols=189 Identities=8% Similarity=-0.073 Sum_probs=148.1
Q ss_pred HHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHhhhcCCCchHHHHHHHHH
Q psy875 45 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK--SFEIVQSTHEKALDLARQNKDDKLIRTVMRSI 122 (480)
Q Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~--~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l 122 (480)
.+.......++|+..+.+++.+ .|....+|+..+.+ ...++ .+++++.++.+++...++. ..++...
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~----nP~~~taWn~R~~~-L~~l~~~~~~eeL~~~~~~L~~nPk~------y~aW~~R 109 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINE----LASHYTIWIYRFNI-LKNLPNRNLYDELDWCEEIALDNEKN------YQIWNYR 109 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHTCTTSCHHHHHHHHHHHHHHCTTC------CHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHH----CcHHHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHCccc------HHHHHHH
Confidence 3344445557999999999999 88888999999999 66667 9999999999999886544 3455666
Q ss_pred HHHH----Hhc---CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH--HHHHHHHHHHhhhhcCcHHHHHHH
Q psy875 123 KKLY----KKH---DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN--LAVDYFNKELRLHARNFPEAVKTL 193 (480)
Q Consensus 123 ~~~y----~~~---~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~~ 193 (480)
+.+. ... +++++++.++.+++...++. ..++...+.+....|+++ +++++++++++. .+....+|
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn--y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~----d~~N~sAW 183 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN--HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT----DLKNNSAW 183 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----CTTCHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh----CCCCHHHH
Confidence 6666 556 79999999999999776544 477888999999999998 999999999998 45556788
Q ss_pred HHHHHHHHHhCCc-----hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH-HHHHHHH
Q psy875 194 GEIGDLYELQEKP-----FELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE-LEQIKTE 256 (480)
Q Consensus 194 ~~l~~~~~~~~~~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~ 256 (480)
.+.+.+....+.. ++++++++.+++.. .+.-..++..++.++.+.|+..+ ...+..+
T Consensus 184 ~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 184 SHRFFLLFSKKHLATDNTIDEELNYVKDKIVK------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp HHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHh------CCCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 8888888877641 78889999888877 44455677788888888888544 3334433
No 305
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.92 E-value=1e-07 Score=87.27 Aligned_cols=154 Identities=6% Similarity=-0.056 Sum_probs=125.1
Q ss_pred ccccHH-HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhcc----------HHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875 49 DNKQYN-LAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS----------FEIVQSTHEKALDLARQNKDDKLIRT 117 (480)
Q Consensus 49 ~~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~----------~~~A~~~~~kAl~~~~~~~~~~~~~~ 117 (480)
..|+++ +|+.++.+++.+ .|....+|+..+.+ ...++. +++++.++.+++...++. ..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~i-L~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn------y~ 109 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA----NPDFATLWNCRREV-LQHLETEKSPEESAALVKAELGFLESCLRVNPKS------YG 109 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT----CTTCHHHHHHHHHH-HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------HH
T ss_pred HcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHH-HHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC------HH
Confidence 345655 899999999998 78878888888888 444454 688899999998775433 56
Q ss_pred HHHHHHHHHHhcCC--hHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875 118 VMRSIKKLYKKHDN--LDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ-YNLAVDYFNKELRLHARNFPEAVKTLG 194 (480)
Q Consensus 118 ~~~~l~~~y~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~ 194 (480)
++...+.+...+++ +++++.++.+++...+.. ..++...+.+....|. ++++++++.++++. .+....+|.
T Consensus 110 aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN--y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~----~p~N~SAW~ 183 (331)
T 3dss_A 110 TWHHRCWLLSRLPEPNWARELELCARFLEADERN--FHCWDYRRFVAAQAAVAPAEELAFTDSLITR----NFSNYSSWH 183 (331)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CSCCHHHHH
T ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH----CCCCHHHHH
Confidence 78888999999984 899999999999877554 4678888888889998 69999999999998 455567888
Q ss_pred HHHHHHHHh--------------CCchHHHHHHHHHHHHH
Q psy875 195 EIGDLYELQ--------------EKPFELVVSTHEKALDL 220 (480)
Q Consensus 195 ~l~~~~~~~--------------~~~~~~A~~~~~~al~~ 220 (480)
+.+.+.... +. ++++++++.+++.+
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~-~~eEle~~~~ai~~ 222 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENV-LLKELELVQNAFFT 222 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHH-HHHHHHHHHHHHHh
Confidence 899888887 56 88999999999877
No 306
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.89 E-value=1.7e-08 Score=77.89 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHH
Q psy875 133 DSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVS 212 (480)
Q Consensus 133 ~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 212 (480)
++|+.+|++++...+. ...++.++|.+|...|++++|+.+|++++++ .+....++..+|.++...|+ +++|+.
T Consensus 2 ~~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~-~~~A~~ 74 (115)
T 2kat_A 2 QAITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDF----DPTYSVAWKWLGKTLQGQGD-RAGARQ 74 (115)
T ss_dssp CCHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTC-HHHHHH
T ss_pred hHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHcCC-HHHHHH
Confidence 3567777777765543 3467788888888888888888888888877 33445677888888888888 888888
Q ss_pred HHHHHHHHHHHcCCc
Q psy875 213 THEKALDLARQNKDD 227 (480)
Q Consensus 213 ~~~~al~~~~~~~~~ 227 (480)
+|++++.+....++.
T Consensus 75 ~~~~al~~~~~~~~~ 89 (115)
T 2kat_A 75 AWESGLAAAQSRGDQ 89 (115)
T ss_dssp HHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccccccH
Confidence 888888776554443
No 307
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.88 E-value=1.2e-07 Score=85.59 Aligned_cols=173 Identities=10% Similarity=-0.017 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc--ccHH
Q psy875 75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC--KDLA 152 (480)
Q Consensus 75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--~~~~ 152 (480)
..++..+|.+|... |++++|++++.+++...+. .....++..++.+|..+|+.+.|.+.+++.....++ ..--
T Consensus 100 ~~~~~~la~i~~~~-g~~eeAL~~l~~~i~~~~~----~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d 174 (310)
T 3mv2_B 100 PYELYLLATAQAIL-GDLDKSLETCVEGIDNDEA----EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDN 174 (310)
T ss_dssp HHHHHHHHHHHHHH-TCHHHHHHHHHHHHTSSCS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCC----cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccch
Confidence 34456889996665 9999999999998754321 234567788999999999999999999988766552 0011
Q ss_pred HHHHHH--HHHHHhhc--cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC--
Q psy875 153 SCYISL--AQTYKDNK--QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD-- 226 (480)
Q Consensus 153 ~~~~~l--a~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-- 226 (480)
.+...| |.+....| ++.+|..+|++..+..+. ......+.+ ++..+|+ +++|...++..++.....++
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~--~~~~~lLln---~~~~~g~-~~eAe~~L~~l~~~~p~~~~k~ 248 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPT--WKTQLGLLN---LHLQQRN-IAEAQGIVELLLSDYYSVEQKE 248 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS--HHHHHHHHH---HHHHHTC-HHHHHHHHHHHHSHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC--cccHHHHHH---HHHHcCC-HHHHHHHHHHHHHhcccccccc
Confidence 233444 44455556 999999999997665321 112333333 8999999 99999999977766543222
Q ss_pred --cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 227 --DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 227 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
.+.-..++.++..+...+|+ +|.++..++.++
T Consensus 249 ~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 249 NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 13356778788888888897 788887777653
No 308
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.84 E-value=4.8e-09 Score=80.21 Aligned_cols=93 Identities=5% Similarity=0.018 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy875 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRT 232 (480)
Q Consensus 153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 232 (480)
..+..+|.++...|+|++|+.+|++++++. |....++.++|.++..+|+ +++|+..+++++.+.....+......
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ----PQNPVGYSNKAMALIKLGE-YTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 344555555555555555555555555552 2223445555555555555 55555555555544322222223344
Q ss_pred HHHHHHHHHHHcCChHHH
Q psy875 233 VMRSMKKLYKKHDKFTEL 250 (480)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A 250 (480)
++..++.++..+|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHhHhhh
Confidence 455555555555544433
No 309
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.83 E-value=6e-08 Score=77.55 Aligned_cols=110 Identities=18% Similarity=0.141 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh--
Q psy875 51 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK-- 128 (480)
Q Consensus 51 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~-- 128 (480)
+++++|+++|+++.+. . ...+ + +|.+| ...+..++|+.+|++|.+.- ...++.++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g---~~~a--~--lg~~y-~~g~~~~~A~~~~~~Aa~~g--------~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N---EMFG--C--LSLVS-NSQINKQKLFQYLSKACELN--------SGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T---CTTH--H--HHHHT-CTTSCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHCS
T ss_pred cCHHHHHHHHHHHHcC-C---CHhh--h--HHHHH-HcCCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHcCC
Confidence 5677788888777766 2 1111 1 77774 33366777778887777641 14566777777777
Q ss_pred --cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHHhh
Q psy875 129 --HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELRL 181 (480)
Q Consensus 129 --~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~ 181 (480)
.+++++|+.+|+++... ....+.++||.+|.. .+++++|+.+|+++.+.
T Consensus 72 g~~~d~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 67788888888777643 234667777777777 77777888877777665
No 310
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.81 E-value=3.3e-08 Score=72.34 Aligned_cols=86 Identities=21% Similarity=0.326 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT 192 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 192 (480)
+....++..+|.++...|++++|+.+|++++...+. ...++.++|.+|...|++++|+.++++++++ .|....+
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~ 79 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEA 79 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----CCCCHHH
Confidence 345678889999999999999999999999976643 4578899999999999999999999999998 3444677
Q ss_pred HHHHHHHHHHhC
Q psy875 193 LGEIGDLYELQE 204 (480)
Q Consensus 193 ~~~l~~~~~~~~ 204 (480)
+.++|.++...|
T Consensus 80 ~~~l~~~~~~~g 91 (91)
T 1na3_A 80 KQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 888998887654
No 311
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.81 E-value=3.8e-08 Score=73.79 Aligned_cols=76 Identities=21% Similarity=0.282 Sum_probs=58.3
Q ss_pred ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH
Q psy875 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK 228 (480)
Q Consensus 149 ~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 228 (480)
|....+++.+|.+|..+|+|++|+.+|++++++. |....++..+|.+|...|+ +++|+..|++++++....++..
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD----PDYVGTYYHLGKLYERLDR-TDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhhcCCchh
Confidence 3445678888888888888888888888888873 3344578888888888888 8888888888888876665544
Q ss_pred H
Q psy875 229 L 229 (480)
Q Consensus 229 ~ 229 (480)
.
T Consensus 79 ~ 79 (100)
T 3ma5_A 79 D 79 (100)
T ss_dssp H
T ss_pred H
Confidence 3
No 312
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.80 E-value=4.8e-08 Score=78.14 Aligned_cols=110 Identities=18% Similarity=0.103 Sum_probs=93.5
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----h
Q psy875 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----N 165 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~ 165 (480)
+++++|+.+|++|.+.. +.. +. +|.+|...+.+++|+++|+++... ....+.++||.+|.. .
T Consensus 9 ~d~~~A~~~~~~aa~~g----~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN----EMF----GC--LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp HHHHHHHHHHHHHHHTT----CTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSC
T ss_pred cCHHHHHHHHHHHHcCC----CHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCC
Confidence 68999999999998753 221 22 999999999999999999999855 345789999999998 8
Q ss_pred ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHH
Q psy875 166 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDL 220 (480)
Q Consensus 166 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~ 220 (480)
+++++|+++|+++.+. ..+.++.+||.+|.. .++ +++|+.+|++|.+.
T Consensus 75 ~d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 75 KDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKN-EKQAVKTFEKACRL 126 (138)
T ss_dssp CCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHHC
Confidence 9999999999999875 235678999999999 788 99999999999764
No 313
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.79 E-value=3.8e-07 Score=82.32 Aligned_cols=174 Identities=6% Similarity=-0.115 Sum_probs=122.3
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT 117 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~ 117 (480)
.++..+|.++...|++++|++++.+++.. .+ ......++..++.+| ...|+.+.|.+.+++..+..+..........
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~-~~~~lea~~l~vqi~-L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l 177 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDN-DE-AEGTTELLLLAIEVA-LLNNNVSTASTIFDNYTNAIEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SC-STTHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CC-CcCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCccccccchHHH
Confidence 34579999999999999999999998765 21 136677778889995 4459999999999988765320000011122
Q ss_pred HHHHHHHHHHhcC--ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--C----cHHH
Q psy875 118 VMRSIKKLYKKHD--NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--N----FPEA 189 (480)
Q Consensus 118 ~~~~l~~~y~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~----~~~~ 189 (480)
+...-|++....| ++.+|..+|++.....+.......+.+ ++..+|++++|...+++.++.... + .+..
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 3333455566666 999999999998766543112233333 899999999999999977766322 0 2446
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
+.++.++..+...+|+ +|.+++.++...
T Consensus 255 ~~~LaN~i~l~~~lgk---~a~~l~~qL~~~ 282 (310)
T 3mv2_B 255 PTFLANQITLALMQGL---DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHHHTTC---TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCh---HHHHHHHHHHHh
Confidence 7888888888888887 667777776554
No 314
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.74 E-value=7.2e-08 Score=96.17 Aligned_cols=158 Identities=8% Similarity=-0.003 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHhcccc----------HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc--cHHHHHHHHHH
Q psy875 34 KDLASCYISLAQTYKDNKQ----------YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK--SFEIVQSTHEK 101 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~--~~~~A~~~~~k 101 (480)
+....+++..+.+....|+ ++++++++.++++. .+....+|+..+.+ ...++ ++++++.++.+
T Consensus 60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~----~pK~y~aW~hR~w~-l~~l~~~~~~~el~~~~k 134 (567)
T 1dce_A 60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWL-LSRLPEPNWARELELCAR 134 (567)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHTCSSCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHH-HHHcccccHHHHHHHHHH
Confidence 3446788999999998888 99999999999999 78888899999999 66678 77999999999
Q ss_pred HHHhhhcCCCchHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh--------------c
Q psy875 102 ALDLARQNKDDKLIRTVMRSIKKLYKKHD-NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN--------------K 166 (480)
Q Consensus 102 Al~~~~~~~~~~~~~~~~~~l~~~y~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~--------------~ 166 (480)
++++..+. ..++...+.+....| .++++++++.+++...+. -..++...+.++..+ +
T Consensus 135 ~l~~d~~N------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~--n~saW~~r~~ll~~l~~~~~~~~~~~~~~~ 206 (567)
T 1dce_A 135 FLEADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--NYSSWHYRSCLLPQLHPQPDSGPQGRLPEN 206 (567)
T ss_dssp HHHHCTTC------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC--CHHHHHHHHHHHHHHSCCCCSSSCCSSCHH
T ss_pred HHhhcccc------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC--CccHHHHHHHHHHhhcccccccccccccHH
Confidence 99985543 567888999999999 999999999999977654 447788888888775 7
Q ss_pred cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHH
Q psy875 167 QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFEL 209 (480)
Q Consensus 167 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (480)
.+++|++++.+|+.+.++ ...+|+.++.++...++ +++
T Consensus 207 ~~~eel~~~~~ai~~~P~----~~saW~y~~~ll~~~~~-~~~ 244 (567)
T 1dce_A 207 VLLKELELVQNAFFTDPN----DQSAWFYHRWLLGRAEP-HDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHHCSS----CSHHHHHHHHHHSCCCC-CSC
T ss_pred HHHHHHHHHHHHHhhCCC----CccHHHHHHHHHhcCCC-ccc
Confidence 899999999999999443 45688889999988887 655
No 315
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.73 E-value=1e-07 Score=73.44 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHH
Q psy875 95 VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDY 174 (480)
Q Consensus 95 A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~ 174 (480)
|+..|++++...+.. ..++.++|.+|...|++++|+.+|++++...+ ....++.++|.+|..+|++++|+.+
T Consensus 4 a~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 4 ITERLEAMLAQGTDN------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp HHHHHHHHHTTTCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455555555443211 23455566666666666666666665554433 2234555566666666666666666
Q ss_pred HHHHHhhh
Q psy875 175 FNKELRLH 182 (480)
Q Consensus 175 ~~~al~~~ 182 (480)
|++++++.
T Consensus 76 ~~~al~~~ 83 (115)
T 2kat_A 76 WESGLAAA 83 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66665553
No 316
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.72 E-value=8.8e-08 Score=70.00 Aligned_cols=85 Identities=22% Similarity=0.430 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH
Q psy875 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL 229 (480)
Q Consensus 150 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 229 (480)
....++..+|.++...|++++|+.+|+++++.. +....++.++|.++...|+ +++|+.++++++.+ .+.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~------~p~ 75 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALEL------DPN 75 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc------CCC
Confidence 346788999999999999999999999999983 3346789999999999999 99999999999987 233
Q ss_pred HHHHHHHHHHHHHHcC
Q psy875 230 IRTVMRSMKKLYKKHD 245 (480)
Q Consensus 230 ~~~~~~~l~~~~~~~g 245 (480)
...++..++.++..+|
T Consensus 76 ~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 4567778888887654
No 317
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.62 E-value=2.9e-07 Score=68.88 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
-..+++.+|.+|...|++++|+.+|++++++ .+....+|..+|.+|.. .|++++|+.+|++++.+.+..++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET----DPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcCCch
Confidence 3568999999999999999999999999999 56666789999999544 599999999999999997765554
No 318
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.51 E-value=1.3e-05 Score=81.22 Aligned_cols=211 Identities=10% Similarity=0.090 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHhccccHHHHH-HHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc-------
Q psy875 37 ASCYISLAQTYKDNKQYNLAV-DYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ------- 108 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~------- 108 (480)
..+++..+......|+.++|. +.|.+|+.. .|.....+...+.+ ....|++++|...|++++.....
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~----~P~s~~Lwl~~a~~-ee~~~~~e~aR~iyek~l~~l~~~~~~~~~ 417 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC----IPNSAVLAFSLSEQ-YELNTKIPEIETTILSCIDRIHLDLAALME 417 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh----CCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 456777888888889999997 999999987 44445566777888 55559999999999999975321
Q ss_pred -CCC--------chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc-cHHHHHHHHHHH
Q psy875 109 -NKD--------DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK-QYNLAVDYFNKE 178 (480)
Q Consensus 109 -~~~--------~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~-~~~~A~~~~~~a 178 (480)
.+. ......++...+.+..+.|..+.|...|.++++..+.. ...+|...|.+-...+ +++.|...|+++
T Consensus 418 ~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~ 496 (679)
T 4e6h_A 418 DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELG 496 (679)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 111 11344567777888888899999999999998762211 1245666677766665 599999999999
Q ss_pred HhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875 179 LRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK 258 (480)
Q Consensus 179 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 258 (480)
++..+.+ ...+...+......|+ .+.|...|++|+.... +......++.....+-...|+.+.+....+++.
T Consensus 497 Lk~~p~~----~~~w~~y~~fe~~~~~-~~~AR~lferal~~~~---~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 497 LKYFATD----GEYINKYLDFLIYVNE-ESQVKSLFESSIDKIS---DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHTTC----HHHHHHHHHHHHHHTC-HHHHHHHHHHHTTTSS---STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHCCCc----hHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9986544 3345667777888899 9999999999986521 123566778888888999999999999998887
Q ss_pred HHH
Q psy875 259 SLE 261 (480)
Q Consensus 259 ~l~ 261 (480)
+..
T Consensus 569 ~~~ 571 (679)
T 4e6h_A 569 EKF 571 (679)
T ss_dssp HHS
T ss_pred HhC
Confidence 644
No 319
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.48 E-value=5.7e-06 Score=76.15 Aligned_cols=166 Identities=11% Similarity=0.015 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhcccccccHHH
Q psy875 75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD-NLDSACSELHTVLSSDLCKDLAS 153 (480)
Q Consensus 75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~-~~~~A~~~~~~~l~~~~~~~~~~ 153 (480)
..++..+..+ ....+..++|+..+.+++.+.+.. ..+++..+.+...+| .+++++.++.+++...++. ..
T Consensus 54 ~~~~~~~r~~-~~~~e~se~AL~lt~~~L~~nP~~------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn--y~ 124 (349)
T 3q7a_A 54 KDAMDYFRAI-AAKEEKSERALELTEIIVRMNPAH------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS--YQ 124 (349)
T ss_dssp HHHHHHHHHH-HHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC--HH
T ss_pred HHHHHHHHHH-HHhCCCCHHHHHHHHHHHHhCchh------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc--HH
Confidence 3444455555 444467789999999999886543 567888899999999 5999999999999777544 47
Q ss_pred HHHHHHHHHHhh-c-cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchH--------HHHHHHHHHHHHHHH
Q psy875 154 CYISLAQTYKDN-K-QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE--------LVVSTHEKALDLARQ 223 (480)
Q Consensus 154 ~~~~la~~y~~~-~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~A~~~~~~al~~~~~ 223 (480)
+++..+.++... + +++++++++.++++. .+....+|...+.+....|. ++ ++++++.++++.
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~----dpkNy~AW~~R~wvl~~l~~-~~~~~~~~~~eELe~~~k~I~~--- 196 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLP----DPKNYHTWAYLHWLYSHFST-LGRISEAQWGSELDWCNEMLRV--- 196 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSS----CTTCHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHHHHHHh---
Confidence 788888888888 7 899999999999987 45557789999999999888 88 899999998876
Q ss_pred cCCcHHHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHH
Q psy875 224 NKDDKLIRTVMRSMKKLYKKHDK-------FTELEQIKTELKSL 260 (480)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~l 260 (480)
.+.-..++...+.+....+. +++++++.++++.+
T Consensus 197 ---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 197 ---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp ---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 44455677788888888886 57777777776654
No 320
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.39 E-value=4.5e-07 Score=67.50 Aligned_cols=87 Identities=10% Similarity=0.166 Sum_probs=64.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcccccccHHH-HHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875 120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLAS-CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD 198 (480)
Q Consensus 120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~-~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~ 198 (480)
..+|..+...|++++|+.+|++++...+. ... ++.++|.+|..+|++++|+.+|++++++.+.+.. ++.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~--- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV--GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA----LQAR--- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH----HHHH---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH----HHHH---
Confidence 46788889999999999999998876543 346 8889999999999999999999999988544332 2211
Q ss_pred HHHHhCCchHHHHHHHHHHHHHH
Q psy875 199 LYELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~ 221 (480)
+. +.+|+.+|+++....
T Consensus 75 -----~~-~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 75 -----KM-VMDILNFYNKDMYNQ 91 (99)
T ss_dssp -----HH-HHHHHHHHCCTTHHH
T ss_pred -----HH-HHHHHHHHHHHhccC
Confidence 34 677777777666553
No 321
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.38 E-value=0.00013 Score=68.21 Aligned_cols=210 Identities=12% Similarity=0.002 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN-FPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~ 113 (480)
..-.+.+.||.+|...|++++-.+++.....++..- ....+.....+-..+...-+..+.-++...++++.++...-..
T Consensus 17 ~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~f 96 (394)
T 3txn_A 17 IKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999998887774211 2223333444444423333556666677777777766432222
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc----ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---Cc
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD----LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NF 186 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~ 186 (480)
....+-..+|.+|...|+|.+|.+.+.+.+..- ....+..++..-..+|..++++.++..++.+|...... ++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 122345589999999999999999998666432 22455778888899999999999999999999887544 34
Q ss_pred HHHHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Q psy875 187 PEAVKTLGEIGDLYE-LQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK 246 (480)
Q Consensus 187 ~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (480)
...+.....-|.++. ..++ |.+|..+|-++.+-+...+. +....+...++-+-...++
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rd-yk~A~~~F~eaf~~f~~~~~-~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERD-FKTAFSYFYEAFEGFDSVDS-VKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHHHHHhccC-HHHHHHHHHHHHhccccccc-HHHHHHHHHHHHHHHHcCC
Confidence 456777777888888 7999 99999999998765543332 3334444555544444444
No 322
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.32 E-value=1.3e-06 Score=64.92 Aligned_cols=60 Identities=12% Similarity=0.217 Sum_probs=54.0
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH-HHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 156 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK-TLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 156 ~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
+..|.++...|++++|+.+|+++++.. +.... ++..+|.++..+|+ +++|+.+|++++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE----PVGKDEAYYLMGNAYRKLGD-WQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC----SSTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Confidence 568999999999999999999999983 33456 89999999999999 99999999999987
No 323
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.32 E-value=1.8e-05 Score=72.66 Aligned_cols=137 Identities=13% Similarity=0.078 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhc---cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhh--c-cHHHHHHHHHHHHHhhhcCCC
Q psy875 38 SCYISLAQTYKD---NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE--K-SFEIVQSTHEKALDLARQNKD 111 (480)
Q Consensus 38 ~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~--~-~~~~A~~~~~kAl~~~~~~~~ 111 (480)
.-++..|..+.. ..++.+|+.+|++|+++ .|..+.++..++.+|.... + .......-+..++........
T Consensus 197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l----DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQS----SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence 334455555543 46679999999999999 7777777777766643211 1 111222333344433222333
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
.+..+.++..++..+...|++++|+..+++++...+ . ...|..+|.++.-.|++++|++.|.+|+.+
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~--s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM--S-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC--C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344566778888888888999999999999987763 2 456788899999999999999999999988
No 324
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.24 E-value=7.3e-06 Score=61.56 Aligned_cols=66 Identities=14% Similarity=-0.034 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccc-----cccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDL-----CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA 183 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~-----~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~ 183 (480)
-+..||..+...++|.+|+..|++++...+ ......++..||.+|.++|++++|+.++++++++.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 456778888888888888888887775432 134567778888888888888888888888887733
No 325
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.19 E-value=0.00041 Score=64.78 Aligned_cols=181 Identities=11% Similarity=0.011 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhcccccc--cHH
Q psy875 76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH-DNLDSACSELHTVLSSDLCK--DLA 152 (480)
Q Consensus 76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~-~~~~~A~~~~~~~l~~~~~~--~~~ 152 (480)
.+...+|.+|... |++++-..++........... ....+.+..++-..+... +..+.-++.+.++++..... .+.
T Consensus 20 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQE-GKAKELADLIKVTRPFLSSIS-KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHTTTGGGGSC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889995555 999999888887766655443 334455556666666654 34455555555555433322 222
Q ss_pred H--HHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc-CCc
Q psy875 153 S--CYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQN-KDD 227 (480)
Q Consensus 153 ~--~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~ 227 (480)
. +-..+|..|++.|+|.+|.+.+.+..+-... +......++.....+|...++ +.++..++.+|....... .++
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n-~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSN-LPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhhccCCCCH
Confidence 2 3457999999999999999999998887655 567788899999999999999 999999999999988776 566
Q ss_pred HHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHH
Q psy875 228 KLIRTVMRSMKKLYK-KHDKFTELEQIKTELKS 259 (480)
Q Consensus 228 ~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 259 (480)
..++.....-|.++. ..++|..|..++-++.+
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 677777778888888 89999999999988754
No 326
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.19 E-value=1.2e-05 Score=60.30 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC---cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARN---FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
.-.+.||..++..++|..|+.+|++|++..... ......++..+|.+++++|+ +++|+.++++++++
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~-~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhc
Confidence 456789999999999999999999999986542 24567889999999999999 99999999999987
No 327
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.13 E-value=0.0001 Score=74.72 Aligned_cols=187 Identities=9% Similarity=-0.013 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCC
Q psy875 53 YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ-STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDN 131 (480)
Q Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~-~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~ 131 (480)
.+.....|++++.. .+.....|...+.. ....|+.++|. ..|.+|+...+.. ...+...+.+....|+
T Consensus 325 ~~Rv~~~Ye~aL~~----~p~~~~lW~~ya~~-~~~~~~~~~a~r~il~rAi~~~P~s------~~Lwl~~a~~ee~~~~ 393 (679)
T 4e6h_A 325 KARMTYVYMQAAQH----VCFAPEIWFNMANY-QGEKNTDSTVITKYLKLGQQCIPNS------AVLAFSLSEQYELNTK 393 (679)
T ss_dssp HHHHHHHHHHHHHH----TTTCHHHHHHHHHH-HHHHSCCTTHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH----cCCCHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCC
Confidence 34456778888887 45556677777887 45558888997 9999999765432 3456678888999999
Q ss_pred hHHHHHHHHHHhcccc---------cc-----------cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875 132 LDSACSELHTVLSSDL---------CK-----------DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191 (480)
Q Consensus 132 ~~~A~~~~~~~l~~~~---------~~-----------~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 191 (480)
+++|...|++++...+ .| ....++...+....+.|..+.|...|.+|++...... ..
T Consensus 394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~---~~ 470 (679)
T 4e6h_A 394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT---PD 470 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC---TH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC---hH
Confidence 9999999998886421 01 2345677788888888999999999999987622211 23
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 259 (480)
.|...|.+-...+++++.|...|+++++.. ++.+. .....+++....|+.+.|...++++..
T Consensus 471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~---p~~~~---~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 471 IYLENAYIEYHISKDTKTACKVLELGLKYF---ATDGE---YINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHH---TTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---CCchH---HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 455566666665544899999999999864 23332 234556677788999999999998765
No 328
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.99 E-value=0.00043 Score=61.01 Aligned_cols=90 Identities=11% Similarity=0.036 Sum_probs=75.4
Q ss_pred ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh-C
Q psy875 131 NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN-----KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ-E 204 (480)
Q Consensus 131 ~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~-~ 204 (480)
...+|...+++++++.+.-....+|..+|.+|... |+.++|..+|++|+++.++ ....++...|..+... |
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~---~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA---HDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT---TCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHhcC
Confidence 46789999999999887766678999999999995 9999999999999999432 1256778889988885 8
Q ss_pred CchHHHHHHHHHHHHHHHHc
Q psy875 205 KPFELVVSTHEKALDLARQN 224 (480)
Q Consensus 205 ~~~~~A~~~~~~al~~~~~~ 224 (480)
+ +++|..++++++......
T Consensus 255 d-~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 255 N-RAGFDEALDRALAIDPES 273 (301)
T ss_dssp C-HHHHHHHHHHHHHCCGGG
T ss_pred C-HHHHHHHHHHHHcCCCCC
Confidence 8 999999999999875543
No 329
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.98 E-value=0.00014 Score=66.89 Aligned_cols=120 Identities=11% Similarity=0.056 Sum_probs=86.3
Q ss_pred hccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc---C-ChHHHHH----HHHHHhcccccccHHHHHHHHHH
Q psy875 89 EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH---D-NLDSACS----ELHTVLSSDLCKDLASCYISLAQ 160 (480)
Q Consensus 89 ~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~---~-~~~~A~~----~~~~~l~~~~~~~~~~~~~~la~ 160 (480)
..++.+|+.+|++|+++.+.. +.++..++.+|... + .-..... .++.+......+..+.++..+|.
T Consensus 212 ~~~~~~A~~l~e~Al~lDP~~------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal 285 (372)
T 3ly7_A 212 DKSLNRASELLGEIVQSSPEF------TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAV 285 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHH
Confidence 356799999999999985432 44455555555321 1 1111111 22222233444666788989999
Q ss_pred HHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 161 TYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 161 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
.+...|++++|+.++++|+.+. +. ...+..+|.++...|+ +++|++.|.+|+.+
T Consensus 286 ~~l~~gd~d~A~~~l~rAl~Ln----~s-~~a~~llG~~~~~~G~-~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 286 SALVKGKTDESYQAINTGIDLE----MS-WLNYVLLGKVYEMKGM-NREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC----CC-HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhcC----CC-HHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc
Confidence 9998999999999999999993 22 4577889999999999 99999999999987
No 330
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.78 E-value=0.00041 Score=55.30 Aligned_cols=105 Identities=14% Similarity=0.003 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCc------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhh
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP------EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLAR 107 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~ 107 (480)
+.-.++++.-....+..+.|+.|+-....++.+. ++.+ ..+.++..+|.+++.+ ++|..|..+|++|+...+
T Consensus 17 ~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~-~~~~~~~sp~~~~~~l~~ladalf~~-~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 17 RGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLS-NNNPELFSPPQKYQLLVYHADSLFHD-KEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp ----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSTTSSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-cCCcccccHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHH
Confidence 3445566666777888999999999999998884 2222 3567888899997777 999999999999998776
Q ss_pred cCCCchH-------------------HHHHHHHHHHHHHhcCChHHHHHHHH
Q psy875 108 QNKDDKL-------------------IRTVMRSIKKLYKKHDNLDSACSELH 140 (480)
Q Consensus 108 ~~~~~~~-------------------~~~~~~~l~~~y~~~~~~~~A~~~~~ 140 (480)
.....+. ...+-+.++.+|..++++++|+..++
T Consensus 95 ~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 95 ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp CC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 5432221 11333455555555555555555554
No 331
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.021 Score=54.77 Aligned_cols=209 Identities=14% Similarity=0.126 Sum_probs=136.1
Q ss_pred cccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc-hHHHHHHHHHHHHH
Q psy875 50 NKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD-KLIRTVMRSIKKLY 126 (480)
Q Consensus 50 ~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~-~~~~~~~~~l~~~y 126 (480)
.|+++.|++-+....+.. ..+......+...+..+++.. ++|+...+++.- + .+..+.. .........+-...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~-~~~~~l~e~i~~-L--skkr~qlk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASR-NKWDDLNEQLTL-L--SKKHGQLKLSIQYMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHH-SCHHHHHHHHHH-H--HTTTTTSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHh-ccHHHHHHHHHH-H--HHHhhhhHHHHHHHHHHHHHHH
Confidence 478999998775555443 445555566777788884555 999887666532 2 2222222 22222222222222
Q ss_pred HhcCChHHHHHHHH-HHhc-cccc-----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHH
Q psy875 127 KKHDNLDSACSELH-TVLS-SDLC-----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIG 197 (480)
Q Consensus 127 ~~~~~~~~A~~~~~-~~l~-~~~~-----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~ 197 (480)
......+....... ..+. .... ...+.+...|+.+|...|++.+|...+.....-..+ +.......+....
T Consensus 105 ~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 105 KSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 22333332222111 1111 1111 224667788999999999999999999886533222 5567788899999
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875 198 DLYELQEKPFELVVSTHEKALDLARQ-NKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK 263 (480)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~ 263 (480)
.+|...++ +.+|...++++...... ...+......+..++.++...++|.+|..+|.++......
T Consensus 185 rl~l~~~d-~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 185 ELSILKGD-YSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHTC-HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCC-HHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 99999999 99999999998654444 4455567788889999999999999999999888765443
No 332
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.76 E-value=0.0018 Score=63.39 Aligned_cols=165 Identities=7% Similarity=-0.060 Sum_probs=91.3
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhcc---------HHHHHHHHHHHHHhhhcCC
Q psy875 40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS---------FEIVQSTHEKALDLARQNK 110 (480)
Q Consensus 40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~---------~~~A~~~~~kAl~~~~~~~ 110 (480)
+..+=..+.+.|+.++|++.|.+..+. +-.++ ..+|+.+-.+ +...+. .++|...|.+.....-
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~--Gv~pd-~~tyn~Li~~-c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~--- 101 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRN--GVQLS-QYHYNVLLYV-CSLAEAATESSPNPGLSRGFDIFKQMIVDKV--- 101 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHH--TCCCC-HHHHHHHHHH-HTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCC-HhHHHHHHHH-HHhCCchhhhhhcchHHHHHHHHHHHHHhCC---
Confidence 344445666777777777777776654 22222 2334444333 222233 3445555544433211
Q ss_pred CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHH
Q psy875 111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAV 190 (480)
Q Consensus 111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 190 (480)
.+. ..+|..+-..|.+.|++++|...|++.....-.|+ ..+|..+-..|.+.|+.++|.+.|++..+. +-.| ..
T Consensus 102 -~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--G~~P-d~ 175 (501)
T 4g26_A 102 -VPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVES--EVVP-EE 175 (501)
T ss_dssp -CCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCCC-CH
T ss_pred -CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC-CH
Confidence 111 34566677777777777777777776554332233 345666667777777777777777665543 1111 13
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy875 191 KTLGEIGDLYELQEKPFELVVSTHEKAL 218 (480)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al 218 (480)
.+|..+-..+.+.|+ .++|...+++..
T Consensus 176 ~ty~~Li~~~~~~g~-~d~A~~ll~~Mr 202 (501)
T 4g26_A 176 PELAALLKVSMDTKN-ADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-HHHHHHHHHHHH
Confidence 456666667777777 777777666643
No 333
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.74 E-value=0.0028 Score=62.00 Aligned_cols=129 Identities=6% Similarity=-0.002 Sum_probs=84.3
Q ss_pred HHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHH-----HHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHH
Q psy875 86 ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKK-----LYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQ 160 (480)
Q Consensus 86 ~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~-----~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~ 160 (480)
+.+.|+.++|+..|++..+..-.. +...........+. .....+..++|.+.|++.....-.|+ ..+|..+-.
T Consensus 36 c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd-~~tyn~lI~ 113 (501)
T 4g26_A 36 CSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN-EATFTNGAR 113 (501)
T ss_dssp TTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHH
Confidence 345599999999999888764322 22111111111111 01233457888888887665443344 356888888
Q ss_pred HHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 161 TYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 161 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
.|.+.|++++|.+.|++..+. +-.| ...+|..+-..|.+.|+ .++|.+.+++..+.
T Consensus 114 ~~~~~g~~~~A~~l~~~M~~~--g~~P-d~~tyn~lI~~~~~~g~-~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 114 LAVAKDDPEMAFDMVKQMKAF--GIQP-RLRSYGPALFGFCRKGD-ADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHTCHHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHc--CCCC-ccceehHHHHHHHHCCC-HHHHHHHHHHHHhc
Confidence 999999999999999886553 1111 24567777888888999 99999998887653
No 334
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.72 E-value=0.00084 Score=53.53 Aligned_cols=101 Identities=13% Similarity=-0.019 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhhhc-----CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC---
Q psy875 155 YISLAQTYKDNKQYNLAVDYFNKELRLHAR-----NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD--- 226 (480)
Q Consensus 155 ~~~la~~y~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--- 226 (480)
+..-..-..+.|.|+.|+-....++.+.+. .+.....++..+|++++.+++ |..|..+|++|+...+....
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~e-yrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKE-YRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 444455566677777777777776666433 233456677777888888888 88888888887766543211
Q ss_pred ----------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875 227 ----------------DKLIRTVMRSMKKLYKKHDKFTELEQIKTE 256 (480)
Q Consensus 227 ----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 256 (480)
.....++.+.++.||.++|++++|+..++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 112346778899999999999999988753
No 335
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.70 E-value=0.00034 Score=55.45 Aligned_cols=86 Identities=10% Similarity=0.084 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccH
Q psy875 92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD---NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQY 168 (480)
Q Consensus 92 ~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~ 168 (480)
...+.+.|.+++.... ....+.+++|+++.+.+ ++++++..+++.+..........++++||..|+++|+|
T Consensus 14 l~~~~~~y~~e~~~~~------~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS------VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHHHTTC------CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHccCC------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 4445555666554211 12456778888888888 67799999998886541113457888999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q psy875 169 NLAVDYFNKELRLHA 183 (480)
Q Consensus 169 ~~A~~~~~~al~~~~ 183 (480)
++|+.|+++++++.+
T Consensus 88 ~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 88 EKALKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998844
No 336
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.61 E-value=0.00047 Score=50.16 Aligned_cols=66 Identities=12% Similarity=-0.005 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCC---hHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 117 TVMRSIKKLYKKHDN---LDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
.++..+|.++...++ .++|...+++++...+ ....+...+|..+++.|+|++|+.++++.++..+.
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 445666666655544 6788888888876654 33466777788888888888888888887776444
No 337
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.58 E-value=0.0011 Score=52.59 Aligned_cols=94 Identities=12% Similarity=-0.040 Sum_probs=67.2
Q ss_pred ccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q psy875 51 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK---SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYK 127 (480)
Q Consensus 51 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~---~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~ 127 (480)
.....+.+.|.+.++. .+....+.+++|.+ ....+ +.++++..+++.++.. .+.....+++++|..|.
T Consensus 12 ~~l~~~~~~y~~e~~~----~~~~~~~~F~ya~~-Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~ 82 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA----GSVSKSTQFEYAWC-LVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNY 82 (152)
T ss_dssp HHHHHHHHHHHHHHHT----TCCCHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc----CCCcHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHH
Confidence 3455566666666553 22345566777777 55545 7779999998888753 12345678899999999
Q ss_pred hcCChHHHHHHHHHHhcccccccHHH
Q psy875 128 KHDNLDSACSELHTVLSSDLCKDLAS 153 (480)
Q Consensus 128 ~~~~~~~A~~~~~~~l~~~~~~~~~~ 153 (480)
++|+|++|.+|++++++..|....+.
T Consensus 83 kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 83 RLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999998888655443
No 338
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.023 Score=54.51 Aligned_cols=197 Identities=9% Similarity=0.047 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
.....++...+..++...++++...+++.-..+. .+..+.....+.....-|.......+. ....+.+.......+.
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk-r~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~ 128 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK-HGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTEN 128 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT-TTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhcc
Confidence 3334566777888888899998877766432222 222222222222222222222122221 1222333322222211
Q ss_pred -----hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhc----ccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh-h
Q psy875 113 -----KLIRTVMRSIKKLYKKHDNLDSACSELHTVLS----SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL-H 182 (480)
Q Consensus 113 -----~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~----~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-~ 182 (480)
...+.+...|+.+|...|++.+|...+..... ..+.......+....++|...++|.+|..++.++... .
T Consensus 129 kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~ 208 (445)
T 4b4t_P 129 KIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208 (445)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc
Confidence 23466778999999999999999999996542 2222445778888999999999999999999997543 2
Q ss_pred hc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy875 183 AR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTV 233 (480)
Q Consensus 183 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 233 (480)
.. .+......+...|.++...++ |.+|..+|.++.......++......+
T Consensus 209 ~~~~~~~lk~~~~~~~~~~~~~e~~-y~~a~~~y~e~~~~~~~~~d~~~~~~~ 260 (445)
T 4b4t_P 209 KNPKYESLKLEYYNLLVKISLHKRE-YLEVAQYLQEIYQTDAIKSDEAKWKPV 260 (445)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcccccCCHHHHHHH
Confidence 22 344567788889999999999 999999999998876665555443333
No 339
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.52 E-value=0.00031 Score=51.17 Aligned_cols=68 Identities=18% Similarity=0.062 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875 150 DLASCYISLAQTYKDNKQ---YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 150 ~~~~~~~~la~~y~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~ 222 (480)
..+.++..+|.+++..++ .++|..++++++++ .|....++..+|.+++..|+ |++|+.+++++++...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~----dp~~~rA~~~lg~~~~~~g~-y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL----EPYNEAALSLIANDHFISFR-FQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----CcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCC
Confidence 345778889988876555 79999999999999 66778899999999999999 9999999999987643
No 340
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.40 E-value=0.026 Score=55.10 Aligned_cols=182 Identities=9% Similarity=-0.077 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH------------------
Q psy875 53 YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL------------------ 114 (480)
Q Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~------------------ 114 (480)
.+.....|++++.. .+.....|...+.. ....|+.+.|...|++|+.. +... ...
T Consensus 195 ~~Rv~~~ye~al~~----~p~~~~lW~~ya~~-~~~~~~~~~ar~i~erAi~~-P~~~-~l~~~y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDS----FYYAEEVYFFYSEY-LIGIGQKEKAKKVVERGIEM-SDGM-FLSLYYGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHH----TTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHH-CCSS-HHHHHHHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhC-CCcH-HHHHHHHhhcchhHHHHHHHH
Confidence 34566788888877 33335666777777 55568999999999999987 3321 100
Q ss_pred -----------------HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc-cHHHHHHHHH
Q psy875 115 -----------------IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK-QYNLAVDYFN 176 (480)
Q Consensus 115 -----------------~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~-~~~~A~~~~~ 176 (480)
...++...+......+..+.|...|.++ . .+. ....++...|.+-...+ +++.|...|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-VGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-CChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0112223333333445566666666665 2 111 12234444444444444 4666666666
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875 177 KELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTE 256 (480)
Q Consensus 177 ~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 256 (480)
++++...+. + ..+...++.....|+ .+.|...|+++. . ....+.....+-...|+.+.+...+++
T Consensus 345 ~al~~~~~~-~---~~~~~yid~e~~~~~-~~~aR~l~er~~-------k---~~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 345 SGLLKHPDS-T---LLKEEFFLFLLRIGD-EENARALFKRLE-------K---TSRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp HHHHHCTTC-H---HHHHHHHHHHHHHTC-HHHHHHHHHHSC-------C---BHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHCCCC-H---HHHHHHHHHHHHcCC-HHHHHHHHHHHH-------H---HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666654322 1 223334445555666 666666665541 0 123344444455556777777766666
Q ss_pred HHH
Q psy875 257 LKS 259 (480)
Q Consensus 257 ~~~ 259 (480)
...
T Consensus 410 ~~~ 412 (493)
T 2uy1_A 410 KMD 412 (493)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 341
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.30 E-value=0.0014 Score=57.87 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=73.7
Q ss_pred cHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc-----CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh-
Q psy875 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH-----DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD- 164 (480)
Q Consensus 91 ~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~-----~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~- 164 (480)
....|...+++|+++.+ ......+|..+|.+|... |+.++|..+|++++.+.++.. ..+++..|..+..
T Consensus 178 ~l~~A~a~lerAleLDP----~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-id~~v~YA~~l~~~ 252 (301)
T 3u64_A 178 TVHAAVMMLERACDLWP----SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-PDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHHHCT----THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-SHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHhCC----CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHh
Confidence 45788888999998854 234577999999999995 999999999999999887532 3678889999988
Q ss_pred hccHHHHHHHHHHHHhhhhc
Q psy875 165 NKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 165 ~~~~~~A~~~~~~al~~~~~ 184 (480)
+|++++|..++++++.....
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGG
T ss_pred cCCHHHHHHHHHHHHcCCCC
Confidence 49999999999999998444
No 342
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.0085 Score=57.29 Aligned_cols=109 Identities=16% Similarity=0.051 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
+..++..+|..|...|++++|.++|.++... ..........+..+-.++... ++|..+..++.+|..+....+++...
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~-~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFY-NDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 3446778999999999999999999998877 444455666667777774444 89999999999998887777777666
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccc
Q psy875 116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSD 146 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~ 146 (480)
.......|.++...++|.+|..+|..+....
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 6666677788888888888888888766443
No 343
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.096 Score=50.28 Aligned_cols=213 Identities=15% Similarity=0.061 Sum_probs=111.5
Q ss_pred HHHhccccHHHHHHHHHHHHH--Hhh---cc--CchHHHHHHHHHHHHHHhhccHHH----------HHHHHHHHHHhhh
Q psy875 45 QTYKDNKQYNLAVDYFNKELR--LHA---RN--FPEAVKTLGEIGDLYELQEKSFEI----------VQSTHEKALDLAR 107 (480)
Q Consensus 45 ~~~~~~~~~~~A~~~~~~al~--~~~---~~--~~~~~~~~~~lg~~y~~~~~~~~~----------A~~~~~kAl~~~~ 107 (480)
......++|++|.++....+. ... .. ..-.+.+|+..+.+ +...|.... -...+..+++.+.
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~-~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLS-HETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH-HHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 344568899999998876652 211 11 12245566766666 333354433 2445667777777
Q ss_pred cCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc---ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 108 QNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD---LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
.-.|....+.+++.+-..|...+.|++|..+..++.-.. .+...+..++.+|.++.-+++|.+|.+++..|++.++.
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 667777888899999999999999999999999885321 22455777888999999999999999999999987554
Q ss_pred C---cHHHHHHHHHHHHHHHHhCCc----------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHH
Q psy875 185 N---FPEAVKTLGEIGDLYELQEKP----------FELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELE 251 (480)
Q Consensus 185 ~---~~~~~~~~~~l~~~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (480)
+ ......++..+--+-.-+|+- ++.++.-|... ..+-+.++......+...-...+.+-|.+.-..
T Consensus 303 ~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~L-v~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~ 381 (523)
T 4b4t_S 303 NSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHL-TKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCV 381 (523)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHH-HHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHH
T ss_pred chhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHhcceeccCChhHHHH
Confidence 2 122333333333333233441 23333333221 222245677777777777788888889887776
Q ss_pred HHHHHHHH
Q psy875 252 QIKTELKS 259 (480)
Q Consensus 252 ~~~~~~~~ 259 (480)
+....+.+
T Consensus 382 rLr~~vir 389 (523)
T 4b4t_S 382 RLRSNVIK 389 (523)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
No 344
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.0088 Score=57.18 Aligned_cols=106 Identities=9% Similarity=0.017 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHH
Q psy875 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAV 190 (480)
Q Consensus 114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~ 190 (480)
.+..++..+|..|...|++++|.+.|.+....... .....++..+.+++...++|..+..++.++..+... ++....
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 34456778999999999999999999987754433 455778888999999999999999999999877554 444555
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 191 KTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
......|.++...++ |.+|..+|..+...
T Consensus 209 ~lk~~~gl~~l~~r~-f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRN-FKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHGGGGTSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh-HHHHHHHHHHHhcc
Confidence 666677888888999 99999999887654
No 345
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.51 E-value=0.055 Score=41.11 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHH---HHHHHHHHhcccccccHHHHHHHHHHHHHhhcc
Q psy875 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDS---ACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ 167 (480)
Q Consensus 91 ~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~---A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~ 167 (480)
....+...|.+++.... ....+.+++|+.+.+..+... ++..++..+........-.+++.||..+++.|+
T Consensus 16 ~l~~~~~~y~~e~~~~~------~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS------VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHSC------CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccCC------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 34445555666654311 113566789999998886665 999999877654212446788999999999999
Q ss_pred HHHHHHHHHHHHhhhhc
Q psy875 168 YNLAVDYFNKELRLHAR 184 (480)
Q Consensus 168 ~~~A~~~~~~al~~~~~ 184 (480)
|++|..+++..+++-+.
T Consensus 90 Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999999998443
No 346
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.24 E-value=0.098 Score=40.84 Aligned_cols=89 Identities=17% Similarity=0.155 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhhhcCCCc--hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHH
Q psy875 93 EIVQSTHEKALDLARQNKDD--KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNL 170 (480)
Q Consensus 93 ~~A~~~~~kAl~~~~~~~~~--~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~ 170 (480)
++-+..|++|+...+..... ...+.++...+.. ...++.++|.+.|+.++.. ....+.++...|..-.++|+...
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~--hKkFAKiwi~~AqFEiRqgnl~k 112 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN--CKKFAFVHISFAQFELSQGNVKK 112 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH--CTTBHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHcccHHH
Confidence 77778899998765443322 3334455555544 5668999999999988876 34458888888999999999999
Q ss_pred HHHHHHHHHhhhhc
Q psy875 171 AVDYFNKELRLHAR 184 (480)
Q Consensus 171 A~~~~~~al~~~~~ 184 (480)
|.+.+.+|+.+...
T Consensus 113 ARkILg~AiG~~~k 126 (161)
T 4h7y_A 113 SKQLLQKAVERGAV 126 (161)
T ss_dssp HHHHHHHHHHTTCB
T ss_pred HHHHHHHHhccCCC
Confidence 99999999988554
No 347
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.86 E-value=0.24 Score=48.22 Aligned_cols=147 Identities=8% Similarity=-0.085 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHH--------------------
Q psy875 93 EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA-------------------- 152 (480)
Q Consensus 93 ~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~-------------------- 152 (480)
..+...|++|+...+.. ..++...+..+...|+.++|...|++++.. |.....
T Consensus 196 ~Rv~~~ye~al~~~p~~------~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYA------EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHTTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHH
Confidence 44567788888765422 456777888889999999999999999977 553211
Q ss_pred ------------------HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHH
Q psy875 153 ------------------SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTH 214 (480)
Q Consensus 153 ------------------~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 214 (480)
.++...+....+.++.+.|...|++| .. +. .....|...|.+-+..+++++.|...|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~---~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EG---VGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SC---CCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CC---CChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 11222233333456667777777777 32 11 112344445555555553377788888
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 215 EKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 215 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
+.+++.. ++.+.. ....++.....|+.+.|...++++
T Consensus 344 e~al~~~---~~~~~~---~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 344 SSGLLKH---PDSTLL---KEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHC---TTCHHH---HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHC---CCCHHH---HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777643 223322 222355566777777777666654
No 348
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.78 E-value=0.18 Score=38.32 Aligned_cols=95 Identities=11% Similarity=-0.083 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh
Q psy875 52 QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI---VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK 128 (480)
Q Consensus 52 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~---A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~ 128 (480)
....+.+.|.++... ......+-+++|.+ .....+... ++..++..+.. ..+.....+++.||..+++
T Consensus 16 ~l~~~~~~y~~e~~~----~~~s~~~~F~yAw~-Lv~S~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA----GSVSKSTQFEYAWC-LVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHH----SCCCHHHHHHHHHH-HTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc----CCCcHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHH
Confidence 344455555555443 12233445666666 444344433 66666654432 1233567789999999999
Q ss_pred cCChHHHHHHHHHHhcccccccHHHHH
Q psy875 129 HDNLDSACSELHTVLSSDLCKDLASCY 155 (480)
Q Consensus 129 ~~~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (480)
+|+|++|..+++..|...|....+..+
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999888876555444
No 349
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.52 E-value=0.45 Score=49.36 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTV 142 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~ 142 (480)
.+..+|..+...++++.|+.+|.++
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4456666666666666666666644
No 350
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.50 E-value=0.24 Score=38.69 Aligned_cols=82 Identities=12% Similarity=0.036 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCc
Q psy875 133 DSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKP 206 (480)
Q Consensus 133 ~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (480)
++-.+.|++++...|. ...+.++...|.. ...++.++|.+.|+.++++. ...+.+|...|..-.++|+
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h----KkFAKiwi~~AqFEiRqgn- 109 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC----KKFAFVHISFAQFELSQGN- 109 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC----TTBHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHccc-
Confidence 6777788877754433 2335666666744 67799999999999999972 2228999999999999999
Q ss_pred hHHHHHHHHHHHHH
Q psy875 207 FELVVSTHEKALDL 220 (480)
Q Consensus 207 ~~~A~~~~~~al~~ 220 (480)
...|.+.+.+|+.+
T Consensus 110 l~kARkILg~AiG~ 123 (161)
T 4h7y_A 110 VKKSKQLLQKAVER 123 (161)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999875
No 351
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.039 Score=52.95 Aligned_cols=166 Identities=10% Similarity=0.025 Sum_probs=72.8
Q ss_pred HHHHHHHhhccHHHHHHHHHHHH--HhhhcCC---CchHHHHHHHHHHHHHHhcCChHHHHH----------HHHHHh--
Q psy875 81 IGDLYELQEKSFEIVQSTHEKAL--DLARQNK---DDKLIRTVMRSIKKLYKKHDNLDSACS----------ELHTVL-- 143 (480)
Q Consensus 81 lg~~y~~~~~~~~~A~~~~~kAl--~~~~~~~---~~~~~~~~~~~l~~~y~~~~~~~~A~~----------~~~~~l-- 143 (480)
+-.+|....+++++|..+-...+ ......+ -+...+.+|+-.+.+|...|+...... .+..++
T Consensus 141 L~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rt 220 (523)
T 4b4t_S 141 LVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKI 220 (523)
T ss_dssp --------------------------------------------------------------CHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHH
Confidence 35566667789999988776655 2222111 123345667777777777776654321 111222
Q ss_pred --cccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh-cCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 144 --SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA-RNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 144 --~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
-.......+.+++.+-+.|...+.|++|..+..++.--.. ......+..++.+|.++.-+++ |.+|.+++..|+..
T Consensus 221 a~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~-Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 221 ASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLD-YSTANEYIIAAIRK 299 (523)
T ss_dssp CCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTSS
T ss_pred HhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHh
Confidence 1122244577888899999999999999999998842111 1345567888999999999999 99999999999865
Q ss_pred HHHcC-CcHHHHHHHHHHHHHHHHcCCh
Q psy875 221 ARQNK-DDKLIRTVMRSMKKLYKKHDKF 247 (480)
Q Consensus 221 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 247 (480)
+.... .......++..+.-+-.-+|+.
T Consensus 300 ap~~~~a~gfr~~a~K~lI~V~LLlG~i 327 (523)
T 4b4t_S 300 APHNSKSLGFLQQSNKLHCCIQLLMGDI 327 (523)
T ss_dssp CSCSSSCSHHHHHHHHHHHHHHHHHTCC
T ss_pred CCcchhhhhHHHHHHHHHHhHHhhcCCC
Confidence 43222 2234455555555554445653
No 352
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.68 E-value=0.56 Score=47.71 Aligned_cols=123 Identities=9% Similarity=0.018 Sum_probs=78.0
Q ss_pred hcCC-hHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh----c----C------cHHHHHH
Q psy875 128 KHDN-LDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA----R----N------FPEAVKT 192 (480)
Q Consensus 128 ~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~----~----~------~~~~~~~ 192 (480)
..++ ++.|+.++++.....+..........++.......+--+|+..+.++++... . + .+.....
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 3455 5778888887665444322211111122222222334467777777764311 1 1 1122334
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875 193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL 257 (480)
Q Consensus 193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 257 (480)
+..-++.+...|+ |+.|++..++|... .|.....+..|+.+|..+|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~-~elAL~~Ak~AV~~------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGD-YELALGVSNTSTEL------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCc-HHHHHHHHHHHHhc------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 5556777888888 99999999999887 5667788889999999999999998776655
No 353
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.69 E-value=1.3 Score=44.98 Aligned_cols=119 Identities=14% Similarity=0.096 Sum_probs=71.6
Q ss_pred cHHHHHHHHHHHHHHhhccCchHHH--HHHHHHHHHHHhhccHHHHHHHHHHHHHhh----hcCC-Cc-------hHHHH
Q psy875 52 QYNLAVDYFNKELRLHARNFPEAVK--TLGEIGDLYELQEKSFEIVQSTHEKALDLA----RQNK-DD-------KLIRT 117 (480)
Q Consensus 52 ~~~~A~~~~~~al~~~~~~~~~~~~--~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~----~~~~-~~-------~~~~~ 117 (480)
.++.|+.++++..+. .+.... ....++.+ ......--+|+....++++-. .... .. +....
T Consensus 264 ~~~~a~~~le~L~~~----~p~~~~~~~~~~i~~~-~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 264 LVDFTIDYLKGLTKK----DPIHDIYYKTAMITIL-DHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp GHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHH-TTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh----CCchhHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 368888888886665 333221 11122222 122234456777777776421 1111 11 22233
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy875 118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNK 177 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~ 177 (480)
.+...+..+...|+|+-|+++-+++....|. -..++..|+.+|..+|+|+.|+-.+.-
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs--eF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALD--SFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCch--hhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 4556677777888888888888888766643 347788888888888888888866544
No 354
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.69 E-value=0.36 Score=36.83 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCC---hHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 117 TVMRSIKKLYKKHDN---LDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
.+-+++|+...+..+ ..+++..++..+...+ ...-.+++.||..+.++|+|++|..+.+..+++-++
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~-~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 556788888887764 4578888887775443 234678899999999999999999999999988444
No 355
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.22 E-value=0.48 Score=36.66 Aligned_cols=68 Identities=10% Similarity=0.034 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCC---hHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 116 RTVMRSIKKLYKKHDN---LDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
..+.+++|+.+.+..+ ..+++..++..+...+. ..-.+++.||..++++|+|++|..|.+..+++-+.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4566788888888774 45788888887764432 34578899999999999999999999999998444
No 356
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=92.77 E-value=2.2 Score=34.01 Aligned_cols=92 Identities=15% Similarity=0.106 Sum_probs=69.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh--hhc------------Cc
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL--HAR------------NF 186 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~~~------------~~ 186 (480)
.++.+..-.|.|..|+..+.+ .+...+.+.-+.+|...++|.+|+..+++.++- -++ ++
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~-------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~ 110 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHK-------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDP 110 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCT
T ss_pred hhhhhhhhcchHhHHHHHHHh-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeecc
Confidence 467777888999988877753 233455666788999999999999999998832 111 23
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
...-..+..+|.++...|. -++|+.++..+...
T Consensus 111 ~DkEfFy~l~a~lltq~g~-r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 111 GDEEFFESLLGDLCTLSGY-REEGIGHYVRSFGK 143 (242)
T ss_dssp TCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcC-HHHhhhHhhhhcCC
Confidence 3445667889999999999 99999999887653
No 357
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.24 E-value=2.7 Score=39.27 Aligned_cols=72 Identities=10% Similarity=0.051 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHhhccCCC
Q psy875 191 KTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS-LEEKLDLNSS 269 (480)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-l~~~~~~~~~ 269 (480)
.+...++..+...|+ +.+|+..+...+.. .+.....+..+..++...|+..+|++.|+.+.+ +.+.++.+..
T Consensus 172 ~a~~~~~~~~l~~g~-~~~a~~~l~~~~~~------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 172 LAHTAKAEAEIACGR-ASAVIAELEALTFE------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 445567888889999 99999999888766 555566888999999999999999999999986 5666666433
No 358
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.24 E-value=0.51 Score=45.60 Aligned_cols=80 Identities=8% Similarity=0.022 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875 117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196 (480)
Q Consensus 117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 196 (480)
.++..||++.+....+..|..+|.+|....|.. +..|+.||.+....|+.-+|+-||-+++-.... ...+..+|
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~--G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P----f~~a~~nL 226 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN--GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP----FPAASTNL 226 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB--SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC----CHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC--CchHHHHHHHHhcccccHHHHHHHHHHHhcCCC----ChhHHHHH
Confidence 467789999999999999999999999777554 478999999999999999999999999866222 23344455
Q ss_pred HHHHHH
Q psy875 197 GDLYEL 202 (480)
Q Consensus 197 ~~~~~~ 202 (480)
..++..
T Consensus 227 ~~~f~~ 232 (497)
T 1ya0_A 227 QKALSK 232 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 359
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.12 E-value=1.6 Score=33.34 Aligned_cols=60 Identities=8% Similarity=-0.031 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHH
Q psy875 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY 155 (480)
Q Consensus 91 ~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (480)
+..+++..+...++.. +.....+++.+|..+.++|+|++|..+.+..+...|....+..+
T Consensus 58 d~~~GI~LLe~l~~~~-----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 58 DERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3445666665554421 23345667777788888888888888888777777665544433
No 360
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.79 E-value=2.5 Score=43.73 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=36.0
Q ss_pred HHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy875 124 KLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKE 178 (480)
Q Consensus 124 ~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~a 178 (480)
.+....|++++|.+..+.. .....+..+|..+.+.++++.|+.+|.++
T Consensus 660 ~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456778888888776432 11256788999999999999999999875
No 361
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.64 E-value=2.2 Score=34.51 Aligned_cols=99 Identities=12% Similarity=-0.007 Sum_probs=57.9
Q ss_pred hhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc
Q psy875 88 QEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ 167 (480)
Q Consensus 88 ~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~ 167 (480)
+.|+++.|.+..++. ++ ...+..+|......|+++-|..+|+++-. +..+..+|.-.|+
T Consensus 17 ~lg~l~~A~e~a~~l-------~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-------ND----SITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD 75 (177)
T ss_dssp HTTCHHHHHHHHHHH-------CC----HHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHh-------CC----HHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC
Confidence 347777776654432 11 34577899999999999999999987632 2234455555666
Q ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q psy875 168 YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKA 217 (480)
Q Consensus 168 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 217 (480)
-+.-.+..+.+..- ++ +..-..+++.+|+ ++++++.|.+.
T Consensus 76 ~e~L~kla~iA~~~--g~-------~n~af~~~l~lGd-v~~~i~lL~~~ 115 (177)
T 3mkq_B 76 VNKLSKMQNIAQTR--ED-------FGSMLLNTFYNNS-TKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHHT--TC-------HHHHHHHHHHHTC-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC--cc-------HHHHHHHHHHcCC-HHHHHHHHHHC
Confidence 55443333333221 11 1122344567788 77777766554
No 362
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.55 E-value=4.7 Score=32.59 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=40.4
Q ss_pred HHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875 124 KLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR 180 (480)
Q Consensus 124 ~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~ 180 (480)
.+....|+++.|.+..++. +....|..||......|+++-|+.+|+++-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 3456789999999987654 1236789999999999999999999988643
No 363
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.42 E-value=0.51 Score=45.60 Aligned_cols=81 Identities=11% Similarity=0.146 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI 115 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~ 115 (480)
..+++..||.+...+..+..|..+|.+|..+ .|.....|+.+|.++..+ |+.-+|+-+|.+++......
T Consensus 151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~----~P~~G~~~nqLavla~~~-~~~l~a~y~y~rsl~~~~Pf------ 219 (497)
T 1ya0_A 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQL----VPSNGQPYNQLAILASSK-GDHLTTIFYYCRSIAVKFPF------ 219 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTBSHHHHHHHHHHHHT-TCHHHHHHHHHHHHSSSBCC------
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHHh----CCCCCchHHHHHHHHhcc-cccHHHHHHHHHHHhcCCCC------
Confidence 4567888999999999999999999999999 888888999999995554 88899999999998553211
Q ss_pred HHHHHHHHHHHH
Q psy875 116 RTVMRSIKKLYK 127 (480)
Q Consensus 116 ~~~~~~l~~~y~ 127 (480)
..+..|+..++.
T Consensus 220 ~~a~~nL~~~f~ 231 (497)
T 1ya0_A 220 PAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 234455555554
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.87 E-value=1.3 Score=48.01 Aligned_cols=94 Identities=13% Similarity=0.043 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhccccc---------------------ccHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy875 120 RSIKKLYKKHDNLDSACSELHTVLSSDLC---------------------KDLASCYISLAQTYKDNKQYNLAVDYFNKE 178 (480)
Q Consensus 120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~---------------------~~~~~~~~~la~~y~~~~~~~~A~~~~~~a 178 (480)
+.+|.+|...|++++|..+|+++-..... ......|..+..++.+.+.++.++++.+.|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666666666666666666644211100 111233444555555666666666666666
Q ss_pred HhhhhcCcHH-HHHHHHHHHHHHHHhCCchHHHHHHH
Q psy875 179 LRLHARNFPE-AVKTLGEIGDLYELQEKPFELVVSTH 214 (480)
Q Consensus 179 l~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~ 214 (480)
++....+.+. ....|.++=..+...|+ |++|...+
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~-ye~Ay~aL 961 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGK-FDAAHVAL 961 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCC-SGGGGHHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCC-HHHHHHHH
Confidence 6554332222 23345555555666666 66655444
No 365
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.83 E-value=1.8 Score=46.87 Aligned_cols=100 Identities=12% Similarity=-0.044 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-------------------CcHHHHHHHHHHHHHHHHhCCchHHHHHHH
Q psy875 154 CYISLAQTYKDNKQYNLAVDYFNKELRLHAR-------------------NFPEAVKTLGEIGDLYELQEKPFELVVSTH 214 (480)
Q Consensus 154 ~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 214 (480)
..+-+|.+|...|++++|..+|+++-.-... ........|..+..++.+.+. ++.+++..
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~-~~~vi~fa 922 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESA-YIDALEFS 922 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 3477999999999999999999986322111 011123567888899999999 99999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy875 215 EKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKT 255 (480)
Q Consensus 215 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 255 (480)
+.|+.... .++.......+..+-+.+...|+|++|...+-
T Consensus 923 ~lAi~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 923 LLADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 99987632 22333445577888899999999999988774
No 366
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.79 E-value=6.9 Score=30.23 Aligned_cols=65 Identities=6% Similarity=-0.050 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhc---cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 152 ASCYISLAQTYKDNK---QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 152 ~~~~~~la~~y~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
..+.+++|.++.... +..+++..++..++. .+...-.+++.||..++++|+ |.+|..+.+..+++
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~-Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGE-YSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhc
Confidence 466777777776654 455788888776663 333566789999999999999 99999999998876
No 367
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.36 E-value=5.6 Score=37.06 Aligned_cols=68 Identities=6% Similarity=-0.074 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HHcC
Q psy875 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA-RQNK 225 (480)
Q Consensus 153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~-~~~~ 225 (480)
.+...++..+...|++.+|+..+.+.+.. .|..-..+..+-.++...|+ ..+|+..|++.-... ++.+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~----~P~~E~~~~~lm~al~~~Gr-~~~Al~~y~~~r~~L~~eLG 240 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFE----HPYREPLWTQLITAYYLSDR-QSDALGAYRRVKTTLADDLG 240 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhC
Confidence 34556788888999999999999998877 34444577788889999999 999999999988754 3444
No 368
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=88.00 E-value=5.9 Score=41.63 Aligned_cols=100 Identities=11% Similarity=0.033 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHH
Q psy875 75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC 154 (480)
Q Consensus 75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 154 (480)
..+|+.+-.. +...|+.++|...+.+..+.....-. +. ..+|+.|-..|.+.|++++|.+.|++.....-.|+. .+
T Consensus 127 ~~TynaLIdg-lcK~G~leeA~~Lf~eM~~m~~kG~~-Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv-vT 202 (1134)
T 3spa_A 127 QQRLLAFFKC-CLLTDQLPLAHHLLVVHHGQRQKRKL-LT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL-LS 202 (1134)
T ss_dssp HHHHHHHHHH-HHHHTCHHHHHHHHHHHHHSHHHHTT-CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-HH
T ss_pred HHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHhhcCCC-CC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH-HH
Confidence 3455555555 33337777777777654432211100 11 346777777777777777777777766544443443 45
Q ss_pred HHHHHHHHHhhccH-HHHHHHHHHH
Q psy875 155 YISLAQTYKDNKQY-NLAVDYFNKE 178 (480)
Q Consensus 155 ~~~la~~y~~~~~~-~~A~~~~~~a 178 (480)
|+.+-..+.+.|+. ++|.+++++.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM 227 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQM 227 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 66666667776663 5666666654
No 369
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=87.89 E-value=2.3 Score=44.57 Aligned_cols=103 Identities=10% Similarity=-0.042 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc---cccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS---DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA 189 (480)
Q Consensus 113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 189 (480)
......|+.+-..|.+.|+.++|...|.+.... ...++ ..+|+.|-..|.+.|+.++|.+.|++..+. +-.|.
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~--G~~PD- 199 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA--GLTPD- 199 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCCCC-
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCc-
Confidence 445567888999999999999999999765432 22233 467888999999999999999999887654 21222
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALD 219 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~ 219 (480)
..+|..+-..+.+.|+..++|...+++..+
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 345666666777778723677777776543
No 370
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.00 E-value=16 Score=32.57 Aligned_cols=130 Identities=9% Similarity=0.080 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhh
Q psy875 30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLAR 107 (480)
Q Consensus 30 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~ 107 (480)
...+.+..+.|..+..-|..+++|++|++.+......+ .+....-+.....+-.+|... + ..-......+..++..
T Consensus 26 ~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~-~-~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 26 AGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA-E-VKVDDISVARLVRLIA 103 (312)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T-CCCSHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHH
Confidence 33445566777888888888889999998877665543 211111222222223442221 1 1111223333333333
Q ss_pred cCC-CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy875 108 QNK-DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFN 176 (480)
Q Consensus 108 ~~~-~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~ 176 (480)
..+ ..+.... + ..+|+..-.+.-. ....-...+..+|..|.+.+++.+|..||-
T Consensus 104 ~~p~~~~~r~~-f------------i~~ai~WS~~~g~--~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKD-V------------ITGMNNWSIKFSE--YKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHH-H------------HHHHHHHHHHTSS--CTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHH-H------------HHHHHHHHhhcCC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 221 1111100 0 0112222221100 112234678889999999999999988884
No 371
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=84.07 E-value=6.3 Score=35.44 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy875 171 AVDYFNKELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMK 238 (480)
Q Consensus 171 A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 238 (480)
++..|.+|+...+. -......-|..+|..+++.++ +.+|+.++-+|-...+..+....-.++|..+-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~-~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~ 343 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKK-YYEAIASWVDAGYVAGKYNYSKDDEEMYKEFH 343 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcch-HHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 77888888877554 122234567778999999999 99999999999888887776655555555443
No 372
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=83.53 E-value=6.9 Score=32.91 Aligned_cols=70 Identities=3% Similarity=-0.156 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLA 106 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~ 106 (480)
-.++.|..++.+ ..|+.+.|...|++|.++. .+.+|-......+.+..||..+++.++|....++|+.+.
T Consensus 125 MKGDYyRYlAE~--~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 125 VKSDISRYKLEF--GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHH--ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 344455555553 3455899999999999986 344555555567778888999999999999999998753
No 373
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=83.26 E-value=7.4 Score=35.71 Aligned_cols=111 Identities=5% Similarity=-0.023 Sum_probs=70.9
Q ss_pred chHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-CcH
Q psy875 112 DKLIRTVMRSIKKLYKKHD---NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NFP 187 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~~ 187 (480)
...+......|-++++.+| +|.-|+-.+-..-+..+.+ |+ ..++..|.+|+...+. -..
T Consensus 253 s~el~~LQq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~----------------gr-~~~~~L~~~AI~sa~~~Y~n 315 (550)
T 3u84_A 253 SLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTP----------------GR-PDPLTLYHKGIASAKTYYRD 315 (550)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCT----------------TC-CCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHhccchhhCchhhcchhhHhhcCCCC----------------CC-CCHHHHHHHHHHHHHHHhcc
Confidence 3455555566677777766 3444444443332222221 11 1367778888776544 122
Q ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy875 188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKL 240 (480)
Q Consensus 188 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 240 (480)
....-|..+|..+++.++ +.+|+.++-.|-...+..+....-.++|..+-++
T Consensus 316 ~HvYPYtYlgGy~yR~~~-~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 367 (550)
T 3u84_A 316 EHIYPYMYLAGYHCRNRN-VREALQAWADTATVIQDYNYCREDEEIYKEFFEV 367 (550)
T ss_dssp CCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred CCccceeecchhhhhcch-HHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 234567778999999999 9999999999999888888776666676665444
No 374
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.39 E-value=27 Score=32.47 Aligned_cols=101 Identities=11% Similarity=0.130 Sum_probs=73.4
Q ss_pred HHHHHhhccHHHHHHHHHHHHhhhhc-------------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC
Q psy875 159 AQTYKDNKQYNLAVDYFNKELRLHAR-------------NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK 225 (480)
Q Consensus 159 a~~y~~~~~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 225 (480)
..+.....+.++|++++++....... .......+...++..|...++ .++|..+++++-......+
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d-~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKND-LVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhhhccC
Confidence 34555667888999888765332110 123355677788999999999 9999999999988777765
Q ss_pred C--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875 226 D--DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260 (480)
Q Consensus 226 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l 260 (480)
+ +......|...+..|...+++..+....-.+...
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4 3466777778899999999998877666655543
No 375
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.39 E-value=11 Score=39.97 Aligned_cols=89 Identities=11% Similarity=-0.065 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhhh-c------------------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy875 155 YISLAQTYKDNKQYNLAVDYFNKELRLHA-R------------------NFPEAVKTLGEIGDLYELQEKPFELVVSTHE 215 (480)
Q Consensus 155 ~~~la~~y~~~~~~~~A~~~~~~al~~~~-~------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 215 (480)
-+-+|.+|...|++++|..+|++|-.-.. . ........|..+..++...+- ++.++...+
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a-~~~vi~fA~ 921 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESA-YIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCC-HHHHHHHHH
Confidence 46799999999999999999998532110 0 011234577889999999999 999999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Q psy875 216 KALDLARQNKDDKLIRTVMRSMKKLYKKHD 245 (480)
Q Consensus 216 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (480)
.|+..+. ..+.......+..+-+.+...|
T Consensus 922 lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 922 LADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 9998653 2344455566666666655544
No 376
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.26 E-value=37 Score=31.47 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=70.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhccc----c-----------cccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---
Q psy875 123 KKLYKKHDNLDSACSELHTVLSSD----L-----------CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--- 184 (480)
Q Consensus 123 ~~~y~~~~~~~~A~~~~~~~l~~~----~-----------~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--- 184 (480)
..+.....+.++|++++++..... . ......+...++..|...++.++|..+++++-.....
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 345566788999999998543211 0 0223556677899999999999999999998766443
Q ss_pred -CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875 185 -NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 185 -~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~ 222 (480)
++......|...+..|...++ |..+....-.++....
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~-~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKND-FNSFYYTSLLYLSTLE 200 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhcc
Confidence 345566777777888888888 8887777666665443
No 377
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=78.93 E-value=23 Score=28.27 Aligned_cols=96 Identities=10% Similarity=0.016 Sum_probs=66.3
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hhhcC--------
Q psy875 40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALD--LARQN-------- 109 (480)
Q Consensus 40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~--~~~~~-------- 109 (480)
-..++...+..|.|..|+-++.+ -+.+.+.+.-+.+ +..+++|..|+..+++.++ +.+..
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~---------lNT~Ts~YYk~LC-y~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ 105 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK---------LNTCTSKYYESLC-YKKKKDYKKAIKSLESILEGKVERDPDVDARIQE 105 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT---------CCBHHHHHHHHHH-HHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred HhhhhhhhhhcchHhHHHHHHHh---------cchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence 34567777788999888776543 1223333445667 4555999999999999883 22211
Q ss_pred --CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q psy875 110 --KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS 145 (480)
Q Consensus 110 --~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~ 145 (480)
-++...-..+..+|.+....|+-++|+.+|..+...
T Consensus 106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 122334557889999999999999999999966543
No 378
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=76.24 E-value=11 Score=34.67 Aligned_cols=108 Identities=5% Similarity=-0.029 Sum_probs=67.1
Q ss_pred chHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-CcH
Q psy875 112 DKLIRTVMRSIKKLYKKHD---NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NFP 187 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~~ 187 (480)
...+......|-++.+..| +|.-|+-.+-...++.+.+. ...++..|++|+...+. -..
T Consensus 238 s~el~~lQq~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~g-----------------rp~~~~Lf~~AI~~ar~~Y~~ 300 (489)
T 4gq4_A 238 SLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPG-----------------RPDPLTLYHKGIASAKTYYRD 300 (489)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTT-----------------SCCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHhccchhhcchhhhcccCHhhcCCCCC-----------------CCCHHHHHHHHHHHHHHhccc
Confidence 3455555666666666665 45555555443333333221 12456778888876544 122
Q ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy875 188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSM 237 (480)
Q Consensus 188 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 237 (480)
.....|..+|-.+++.++ |.+|+.++-+|-......+....-.++|..+
T Consensus 301 ~hvYPYtYlgG~~~R~~~-~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~ 349 (489)
T 4gq4_A 301 EHIYPYMYLAGYHCRNRN-VREALQAWADTATVIQDYNYCREDEEIYKEF 349 (489)
T ss_dssp CCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTSCCCTTCHHHHHHH
T ss_pred CcccceeecchHHHHhhh-HHHHHHHhhhhhhhhhhcccccchHHHHHHH
Confidence 235667789999999999 9999999999988877766544434454443
No 379
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=76.19 E-value=27 Score=27.68 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhhc---CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHH
Q psy875 96 QSTHEKALDLARQ---NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAV 172 (480)
Q Consensus 96 ~~~~~kAl~~~~~---~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~ 172 (480)
...+++++..+.. ..+++....++...+... +.+...|.-.....-....+..|...|..+...|++.+|.
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~ 116 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKAD 116 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 3456666665533 234455555665555542 3356666655544545677889999999999999999999
Q ss_pred HHHHHHHhhh
Q psy875 173 DYFNKELRLH 182 (480)
Q Consensus 173 ~~~~~al~~~ 182 (480)
+.|+.+++..
T Consensus 117 ~Iy~~Gi~~~ 126 (164)
T 2wvi_A 117 AIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999999874
No 380
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=75.83 E-value=22 Score=26.40 Aligned_cols=52 Identities=12% Similarity=0.179 Sum_probs=31.4
Q ss_pred HHhCCchHHHHHHHHHHHHHHHH---cC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875 201 ELQEKPFELVVSTHEKALDLARQ---NK-DDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLD 265 (480)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~~---~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~ 265 (480)
-..|+ |++|+.+|..|++++.. .. ..+.....+.. ++.+|+.++..|...+.
T Consensus 29 D~ag~-y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~------------K~~eYl~RAE~LK~~l~ 84 (117)
T 2cpt_A 29 DKAGN-YEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA------------KCTEYLDRAEKLKEYLK 84 (117)
T ss_dssp HHHTC-HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHccC-HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH------------HHHHHHHHHHHHHHHHh
Confidence 35577 99999999999886432 12 23333333332 35666777777766554
No 381
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.93 E-value=34 Score=28.16 Aligned_cols=86 Identities=12% Similarity=0.152 Sum_probs=61.7
Q ss_pred HHHHHHHHhhhcC---CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHH
Q psy875 97 STHEKALDLARQN---KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVD 173 (480)
Q Consensus 97 ~~~~kAl~~~~~~---~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~ 173 (480)
..+++++..+... .+++....++...+..+ ..+....+...|.-.....-....+..|...|..+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677777655443 34455556666666554 2344668888888666555556778889999999999999999999
Q ss_pred HHHHHHhhhh
Q psy875 174 YFNKELRLHA 183 (480)
Q Consensus 174 ~~~~al~~~~ 183 (480)
.|+.+++...
T Consensus 137 Vy~~GI~~~A 146 (202)
T 3esl_A 137 LLELGAENNC 146 (202)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999998643
No 382
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.56 E-value=17 Score=28.45 Aligned_cols=81 Identities=7% Similarity=0.036 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhhc---CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHH
Q psy875 96 QSTHEKALDLARQ---NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAV 172 (480)
Q Consensus 96 ~~~~~kAl~~~~~---~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~ 172 (480)
...+++++..+.. ..+++....++...+.. .+.+.+.|.-.....-....+..|...|..+...|++.+|.
T Consensus 48 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 121 (152)
T 4a1g_A 48 ITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHAS 121 (152)
T ss_dssp HHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3556666655533 23344444444444433 23467777766555555667888999999999999999999
Q ss_pred HHHHHHHhhh
Q psy875 173 DYFNKELRLH 182 (480)
Q Consensus 173 ~~~~~al~~~ 182 (480)
+.|+.+++..
T Consensus 122 ~Vy~~Gi~~~ 131 (152)
T 4a1g_A 122 AVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999998863
No 383
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=74.06 E-value=69 Score=33.52 Aligned_cols=207 Identities=11% Similarity=-0.040 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc-CCC---
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLH-ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ-NKD--- 111 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~-~~~--- 111 (480)
.-+...+|.++. |+.++++..+.+-+.-. ..+.....-++..+|.+ +...+ .+++.++...+.-... .++
T Consensus 376 ~sA~aSLGlIh~--g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli-~ag~~--~~~~~lL~~~L~~~~~~~~~~~~ 450 (963)
T 4ady_A 376 FTATASLGVIHK--GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLI-YAGFG--RDTTDYLKNIIVENSGTSGDEDV 450 (963)
T ss_dssp HHHHHHHHHHTS--SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHH-TTTTT--HHHHHHHHHHHHHHSSCCSCHHH
T ss_pred HHHHHHhhhhcc--CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHh-cCCCc--HHHHHHHHHHHcCcccccccccc
Confidence 445567777765 45556666665533210 01112356678888988 33323 4677777776643220 111
Q ss_pred chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875 112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191 (480)
Q Consensus 112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 191 (480)
......+-..||.+|...++ +++.+.+...+..........+-..||.++.-.|+-+-....+..+.+. .+. ...
T Consensus 451 ~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e-~vr 525 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHG-NIT 525 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCH-HHH
T ss_pred HHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcH-HHH
Confidence 22233455688888887765 5677777776643322111345667899999999876555555554432 122 222
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875 192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK 258 (480)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 258 (480)
-...+|......|+ .+.+.... +......++.....+...++-.|...|+...-...+..+.
T Consensus 526 R~aalgLGll~~g~-~e~~~~li----~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 526 RGLAVGLALINYGR-QELADDLI----TKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp HHHHHHHHHHTTTC-GGGGHHHH----HHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCC-hHHHHHHH----HHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 22344444445566 44333332 3333445555555666778888999999765554555443
No 384
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.52 E-value=33 Score=36.25 Aligned_cols=82 Identities=12% Similarity=-0.000 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcccc-c--------------------ccHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy875 120 RSIKKLYKKHDNLDSACSELHTVLSSDL-C--------------------KDLASCYISLAQTYKDNKQYNLAVDYFNKE 178 (480)
Q Consensus 120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~-~--------------------~~~~~~~~~la~~y~~~~~~~~A~~~~~~a 178 (480)
+.+|.+|...|++++|..+|+++-..-. . ......|..+..++.+.+-++-++++.+.|
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lA 923 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 923 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6799999999999999999997652210 0 112346677888888999999999999999
Q ss_pred HhhhhcCcH-HHHHHHHHHHHHHH
Q psy875 179 LRLHARNFP-EAVKTLGEIGDLYE 201 (480)
Q Consensus 179 l~~~~~~~~-~~~~~~~~l~~~~~ 201 (480)
++....+.+ .....+..+=.+..
T Consensus 924 I~~~~~dd~~l~~~l~~r~f~~a~ 947 (950)
T 4gq2_M 924 DASKETDDEDLSIAITHETLKTAC 947 (950)
T ss_dssp HHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred HhhcccCCccchHHHHHHHHHHHh
Confidence 987655333 33444444444433
No 385
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=70.66 E-value=25 Score=33.33 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH-HHH
Q psy875 154 CYISLAQTYKDNKQYNLAVDYFNKELRLHAR-------NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL-ARQ 223 (480)
Q Consensus 154 ~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~-~~~ 223 (480)
..+.+-.+|++.++..-+...++. ++.... .....+..++.+|.++..+++ |.+|.+++..|+.. ...
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~-i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~-y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKN-FQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQ-VHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHT-HHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-hccCCCCcChhhCCccceEeeeHHHHHHHHHHcc-HHHHHHHHHHHHHhcCCc
Confidence 445567888999988888877743 332111 234567778889999999999 99999999999887 543
No 386
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=69.53 E-value=54 Score=28.18 Aligned_cols=52 Identities=10% Similarity=0.028 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhhhc----CcHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHH
Q psy875 169 NLAVDYFNKELRLHAR----NFPEAVKTLGEIGDLYELQ-EKPFELVVSTHEKALDLA 221 (480)
Q Consensus 169 ~~A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~al~~~ 221 (480)
+.|...|++|.++... .+|.......|.+..|+.. ++ .++|....++|.+-+
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~-p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNS-PDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 5677888888877433 4566666666777777764 55 888888888887644
No 387
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=69.32 E-value=52 Score=27.87 Aligned_cols=172 Identities=9% Similarity=0.021 Sum_probs=84.6
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC--chHHHH
Q psy875 40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD--DKLIRT 117 (480)
Q Consensus 40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~--~~~~~~ 117 (480)
+..+|.+.-..++|++..++.++..+. ...... .-.+.++.+|....|....+........+-....++ ......
T Consensus 11 ~v~~AklaeqaeRyddM~~~mk~v~~~-~~eLs~--EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~~~i~ 87 (236)
T 3iqu_A 11 LIQKAKLAEQAERYEDMAAFMKGAVEK-GEELSC--EERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEVR 87 (236)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-CCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCSHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-CCcCCH--HHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 456677778889999999999998876 332222 223445666555545555554444322111110111 111111
Q ss_pred HHH-----HHHHHHHhcCChHHHHHHHHHHhc-cccccc-HHHHHHHHHHHHHhh-----c-----cHHHHHHHHHHHHh
Q psy875 118 VMR-----SIKKLYKKHDNLDSACSELHTVLS-SDLCKD-LASCYISLAQTYKDN-----K-----QYNLAVDYFNKELR 180 (480)
Q Consensus 118 ~~~-----~l~~~y~~~~~~~~A~~~~~~~l~-~~~~~~-~~~~~~~la~~y~~~-----~-----~~~~A~~~~~~al~ 180 (480)
-|. .|..+. .+.+..+.+.+- ....+. ....+-..|..|... | --+.|...|++|.+
T Consensus 88 ~yr~kie~EL~~iC------~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~ 161 (236)
T 3iqu_A 88 EYREKVETELQGVC------DTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMD 161 (236)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 111 111110 111122221110 000011 111112234443321 2 13577888888887
Q ss_pred hhhc----CcHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHH
Q psy875 181 LHAR----NFPEAVKTLGEIGDLYELQ-EKPFELVVSTHEKALDLA 221 (480)
Q Consensus 181 ~~~~----~~~~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~al~~~ 221 (480)
+... .+|.......|.+..|+.. ++ .++|....++|.+-+
T Consensus 162 iA~~~L~pthPirLGLaLNfSVFyyEiln~-~~~Ac~lAk~Afd~A 206 (236)
T 3iqu_A 162 ISKKEMPPTNPIRLGLALNFSVFHYEIANS-PEEAISLAKTTFDEA 206 (236)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTSSC-HHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 7543 4566666666777777765 55 999999888887643
No 388
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=68.61 E-value=15 Score=25.72 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALD 219 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~ 219 (480)
+-.+...+..+...|+ |++|+++.++|..
T Consensus 15 AH~~~RrAe~ll~~gk-ydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGK-YEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCC-HHHHHHHHHHHHH
Confidence 3344445555555555 5555555555554
No 389
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=66.78 E-value=62 Score=27.85 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhhhc----CcHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHH
Q psy875 169 NLAVDYFNKELRLHAR----NFPEAVKTLGEIGDLYEL-QEKPFELVVSTHEKALDL 220 (480)
Q Consensus 169 ~~A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~-~~~~~~~A~~~~~~al~~ 220 (480)
+.|...|++|.++... .+|.......+.+..|+. +++ .++|....++|..-
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~-~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNS-PDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHH
Confidence 4778888888887543 456666666777777776 466 89999888888754
No 390
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=66.24 E-value=13 Score=25.58 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLH 67 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 67 (480)
.+..+...|.-.-..|+|++|+.+|.++++.+
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l 49 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIEVL 49 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34445555666666677777777777777664
No 391
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=65.89 E-value=11 Score=26.33 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Q psy875 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLH 67 (480)
Q Consensus 35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 67 (480)
..+..+-..+..+...|.|++||++.++|..++
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL 45 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYL 45 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 356777788899999999999999999998875
No 392
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=64.15 E-value=56 Score=29.53 Aligned_cols=69 Identities=12% Similarity=0.084 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcC--ChHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 116 RTVMRSIKKLYKKHD--NLDSACSELHTVLSSDLC---KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 116 ~~~~~~l~~~y~~~~--~~~~A~~~~~~~l~~~~~---~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
..++.+||.+-...- ....++..|.+++..... .....-|..+|..+++.+++.+|+.++-+|-.....
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 344455555544322 222266677766644332 233456788999999999999999999888776444
No 393
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.11 E-value=87 Score=31.08 Aligned_cols=119 Identities=7% Similarity=-0.098 Sum_probs=75.7
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH
Q psy875 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN 169 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~ 169 (480)
.+.+.|...+.+.-.... . +..........++.-....+...++...+.+......+.... - ..+..-...|+++
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e-~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-L-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLI--E-RRVRMALGTGDRR 302 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-C-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHH--H-HHHHHHHHHTCHH
T ss_pred cCHHHHHHHHHhhhhccC-C-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHH--H-HHHHHHHHCCCHH
Confidence 677888877766554222 1 233334455556655566665677777777655433322222 2 2333345679999
Q ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy875 170 LAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKAL 218 (480)
Q Consensus 170 ~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al 218 (480)
.|..+|.+.-.- ........+.+|.++...|+ .++|..+|+++.
T Consensus 303 ~a~~~~~~l~~~----~~~~~r~~YW~~ra~~~~g~-~~~a~~~~~~~a 346 (618)
T 1qsa_A 303 GLNTWLARLPME----AKEKDEWRYWQADLLLERGR-EAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHHSCTT----GGGSHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHcccc----ccccHhHHHHHHHHHHHcCC-HHHHHHHHHHHh
Confidence 999998654321 23346677889999999999 999999988875
No 394
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=62.63 E-value=73 Score=27.19 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhhhc----CcHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHH
Q psy875 169 NLAVDYFNKELRLHAR----NFPEAVKTLGEIGDLYEL-QEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 169 ~~A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~-~~~~~~~A~~~~~~al~~~ 221 (480)
+.|...|++|.++... .+|.......|.+..|+. +++ .++|....++|++-+
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~-~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNA-PEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 5778888888877543 456666666777777777 455 999999888887654
No 395
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=62.53 E-value=19 Score=24.46 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875 155 YISLAQTYKDNKQYNLAVDYFNKELRLH 182 (480)
Q Consensus 155 ~~~la~~y~~~~~~~~A~~~~~~al~~~ 182 (480)
...+|+=|.-.|+|+.|+.||+.+++..
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI 42 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQM 42 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 4557888888888888888888877653
No 396
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=60.00 E-value=77 Score=26.60 Aligned_cols=168 Identities=7% Similarity=-0.019 Sum_probs=86.7
Q ss_pred HHHHHHhccccHHHHHHHHHHHHH----HhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875 42 SLAQTYKDNKQYNLAVDYFNKELR----LHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT 117 (480)
Q Consensus 42 ~lg~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~ 117 (480)
.++.+.-..++|++..++..+..+ . ..... ..-.+.++.+|....|....+....... +... .++.....
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~-~~eLt--~EERnLLSvAYKNvig~rR~swRiissi-Eqke-k~~~~~~~- 84 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFE-NSEFD--DEERHLLTLCIKHKISDYRTMTSQVLQE-QTKQ-LNNDELVK- 84 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHS-CSCHHHHH-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhcc-CCCCC--HHHHHHHHHHHHHhhcccHHHHHHHHHH-HHHH-cCCHHHHH-
Confidence 677788889999999999999888 4 32222 2223445566544445444444333221 1111 11111111
Q ss_pred HHHHHHHHHHhcCChHHHHH-HHHHHhcc-----ccc-ccHHHHHHHHHHHHH-----hhccHHHHHHHHHHHHhhhhc-
Q psy875 118 VMRSIKKLYKKHDNLDSACS-ELHTVLSS-----DLC-KDLASCYISLAQTYK-----DNKQYNLAVDYFNKELRLHAR- 184 (480)
Q Consensus 118 ~~~~l~~~y~~~~~~~~A~~-~~~~~l~~-----~~~-~~~~~~~~~la~~y~-----~~~~~~~A~~~~~~al~~~~~- 184 (480)
+..-|.. +.++-+. .+...+.. .|. ......+-..|..|. ..|+-+.|...|++|.++...
T Consensus 85 ----~i~~yr~--kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~ 158 (227)
T 2o8p_A 85 ----ICSEYVF--SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEH 158 (227)
T ss_dssp ----HHHHHHH--HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHH--HHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhh
Confidence 1111111 1111111 11111110 010 011112222344443 345578999999999988653
Q ss_pred ---CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875 185 ---NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 185 ---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~ 221 (480)
.+|.......|.+..|+..-++.++|....++|+.++
T Consensus 159 L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 159 PDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp GGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 3454555666777777765444999999999998764
No 397
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=59.71 E-value=18 Score=24.85 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Q psy875 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLH 67 (480)
Q Consensus 37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 67 (480)
+.-+...|.-.-..|+|++|+.+|.++++.+
T Consensus 11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l 41 (83)
T 2v6y_A 11 ARKYAILAVKADKEGKVEDAITYYKKAIEVL 41 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4444555555556667777777777666664
No 398
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=59.51 E-value=15 Score=25.33 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=8.6
Q ss_pred hCCchHHHHHHHHHHHHH
Q psy875 203 QEKPFELVVSTHEKALDL 220 (480)
Q Consensus 203 ~~~~~~~A~~~~~~al~~ 220 (480)
.|+ |++|+.+|.++++.
T Consensus 32 ~g~-y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 32 EGN-AEEAITNYKKAIEV 48 (83)
T ss_dssp TTC-HHHHHHHHHHHHHH
T ss_pred hcc-HHHHHHHHHHHHHH
Confidence 344 55555555555543
No 399
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=58.87 E-value=56 Score=25.79 Aligned_cols=69 Identities=12% Similarity=-0.084 Sum_probs=47.9
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhhhcC--c--HHHHHHH-HHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC
Q psy875 156 ISLAQTYKDNKQYNLAVDYFNKELRLHARN--F--PEAVKTL-GEIGDLYELQEKPFELVVSTHEKALDLARQNK 225 (480)
Q Consensus 156 ~~la~~y~~~~~~~~A~~~~~~al~~~~~~--~--~~~~~~~-~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 225 (480)
+.-|..++..|+|=+|-+.++..-...... . .....+. ...|..+...|+ ..-|...+.+|+.......
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN-~~GA~~ll~~Al~~L~~~~ 109 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFED-DDGMRSLFRTSLQYFRGVP 109 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhCC
Confidence 345666677799999988888876654332 1 2334445 556667777899 9999999999988765543
No 400
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=57.50 E-value=31 Score=28.54 Aligned_cols=31 Identities=6% Similarity=0.104 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLH 182 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~ 182 (480)
+...+.+|.++...++|.+|.+++.+|++.+
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~ 44 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHC 44 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHC
Confidence 3444445555555555555555555555543
No 401
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=57.49 E-value=1.3e+02 Score=28.44 Aligned_cols=155 Identities=9% Similarity=0.033 Sum_probs=91.6
Q ss_pred ccHHHHHHHHHHHHHhhhcCCC-----c---hH--HHHHHHHHHHHHHhcCChHHHHHHHHHHh--------cccccccH
Q psy875 90 KSFEIVQSTHEKALDLARQNKD-----D---KL--IRTVMRSIKKLYKKHDNLDSACSELHTVL--------SSDLCKDL 151 (480)
Q Consensus 90 ~~~~~A~~~~~kAl~~~~~~~~-----~---~~--~~~~~~~l~~~y~~~~~~~~A~~~~~~~l--------~~~~~~~~ 151 (480)
...+.+-....++........+ . +. .....+++-.+|.+.++..-+...++..- ...+..+.
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 3456666777777765432111 1 12 22334577799999999999999887321 12222455
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhh-hhcC------cHHHHHHHHHHHHHHHHhCCchH-H---------HHHH-
Q psy875 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRL-HARN------FPEAVKTLGEIGDLYELQEKPFE-L---------VVST- 213 (480)
Q Consensus 152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~-~~~~------~~~~~~~~~~l~~~~~~~~~~~~-~---------A~~~- 213 (480)
+..++.+|.++...++|.+|.+++.+|++. +... ....-.++..+--+..-.|+ +. . .+.-
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~-~P~~~ll~k~~~~~L~~~ 298 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGK-MVKWGPLRPFLSQETIDN 298 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTC-CBCHHHHGGGSCHHHHHH
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCC-CCCHHHHcccchHHHHHH
Confidence 777888999999999999999999999998 6643 12223333334334444554 31 1 1111
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Q psy875 214 HEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK 246 (480)
Q Consensus 214 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (480)
|.. +-.+-+.++......++..-...+.+.|-
T Consensus 299 y~~-L~~AVr~Gdl~~F~~~L~~~~~~f~~~gi 330 (455)
T 3t5v_B 299 WSV-LYKHVRYGNIQGVSLWLRQNERHLCARQL 330 (455)
T ss_dssp HHH-HHHHHHHTCHHHHHHHHHHTHHHHHHTTC
T ss_pred HHH-HHHHHHhCCHHHHHHHHHHhHHHHHHcCC
Confidence 222 12223445555555565555566666666
No 402
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=56.04 E-value=18 Score=24.87 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=12.8
Q ss_pred HhCCchHHHHHHHHHHHHHHH
Q psy875 202 LQEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 202 ~~~~~~~~A~~~~~~al~~~~ 222 (480)
..|+ |++|+.+|.++++.+.
T Consensus 23 ~~g~-y~eAl~lY~~aie~l~ 42 (83)
T 2v6y_A 23 KEGK-VEDAITYYKKAIEVLS 42 (83)
T ss_dssp HTTC-HHHHHHHHHHHHHHHH
T ss_pred Hhcc-HHHHHHHHHHHHHHHH
Confidence 4566 7777777777766443
No 403
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=55.92 E-value=93 Score=26.30 Aligned_cols=52 Identities=10% Similarity=0.030 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhhhc----CcHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHH
Q psy875 169 NLAVDYFNKELRLHAR----NFPEAVKTLGEIGDLYEL-QEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 169 ~~A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~-~~~~~~~A~~~~~~al~~~ 221 (480)
+.|...|++|+++... .+|.......+.+..|+. .++ .++|....++|..-+
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~-~~~A~~lAk~afd~A 203 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNS-PDRACRLAKAAFDDA 203 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 4677888888877543 455556666667776666 466 888888888887644
No 404
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=55.42 E-value=1e+02 Score=26.55 Aligned_cols=52 Identities=8% Similarity=0.053 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhhc---CcHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHH
Q psy875 169 NLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYEL-QEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 169 ~~A~~~~~~al~~~~~---~~~~~~~~~~~l~~~~~~-~~~~~~~A~~~~~~al~~~ 221 (480)
+.|...|++|.++... .+|.......|.+..|+. +++ .++|....++|.+-+
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~-~~~Ac~lAk~Afd~A 228 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNE-PRAAIDMAKEAFEMA 228 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 4677888888877621 355555666666766666 456 888888888877644
No 405
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=54.62 E-value=1.3e+02 Score=27.48 Aligned_cols=146 Identities=11% Similarity=0.088 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhccc---------cHHHHHHHHHHHHHHh------------hccCchHHHHHHHHHHHHH
Q psy875 28 LSSDLCKDLASCYISLAQTYKDNK---------QYNLAVDYFNKELRLH------------ARNFPEAVKTLGEIGDLYE 86 (480)
Q Consensus 28 ~~~~~~~~~~~~~~~lg~~~~~~~---------~~~~A~~~~~~al~~~------------~~~~~~~~~~~~~lg~~y~ 86 (480)
...+..-+.+.+++++|.+|...+ ..+.|..+|++|-.++ ..-.+....++..+... .
T Consensus 108 ~~~sl~fE~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~LA-Q 186 (363)
T 3rau_A 108 AHEDIKYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQAYSVDMSRQILTLNVNLMLG-Q 186 (363)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSGGGSHHHHHHHHHHHHH-H
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHHHH-H
Q ss_pred HhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHH----------HHHHHhcccccccHHHHHH
Q psy875 87 LQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACS----------ELHTVLSSDLCKDLASCYI 156 (480)
Q Consensus 87 ~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~----------~~~~~l~~~~~~~~~~~~~ 156 (480)
.+ +-.+.||+. .......++..-...+..|......-.... .+...+......-.+.+++
T Consensus 187 AQ-------E~~~~Kai~---~~~k~~liAkLa~q~~~~Y~~a~~~l~~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y 256 (363)
T 3rau_A 187 AQ-------ECLLEKSML---DNRKSFLVARISAQVVDYYKEACRALENPDTASLLGRIQKDWKKLVQMKIYYFAAVAHL 256 (363)
T ss_dssp HH-------HHHHHHHHH---TTCCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHhcCccccccccccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 157 SLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 157 ~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
..|....+.+++-+|+.+++.|.+....
T Consensus 257 ~~a~~~~e~~k~GeaIa~L~~A~~~l~~ 284 (363)
T 3rau_A 257 HMGKQAEEQQKFGERVAYFQSALDKLNE 284 (363)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhhhHHHHHHHHHHHHHHHHH
No 406
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.00 E-value=1e+02 Score=25.82 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhhcC---CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHH
Q psy875 96 QSTHEKALDLARQN---KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAV 172 (480)
Q Consensus 96 ~~~~~kAl~~~~~~---~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~ 172 (480)
...+++++..+... .+++....++...+.. -+.+...|.-.....-....+..|...|..+...|+|.+|.
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 170 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKAD 170 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 35677777655433 2334444444444442 23555666654444444566788888899999999999999
Q ss_pred HHHHHHHhhh
Q psy875 173 DYFNKELRLH 182 (480)
Q Consensus 173 ~~~~~al~~~ 182 (480)
+.|+.+++..
T Consensus 171 ~Vy~~Gi~~~ 180 (223)
T 4aez_C 171 EVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcC
Confidence 9998888763
No 407
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=52.98 E-value=38 Score=22.57 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=25.4
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCch
Q psy875 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE 73 (480)
Q Consensus 39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 73 (480)
-...+|..+...|++++|..+|-+|+.+ .+.+..
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~V-c~qP~~ 52 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAV-CGQPQQ 52 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-CSSCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-cCCHHH
Confidence 3466788888888888888888888887 444433
No 408
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=51.10 E-value=47 Score=23.44 Aligned_cols=65 Identities=6% Similarity=-0.238 Sum_probs=41.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhhhhcC--cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC
Q psy875 158 LAQTYKDNKQYNLAVDYFNKELRLHARN--FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK 225 (480)
Q Consensus 158 la~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 225 (480)
-|..++..|+|=+|-+.++..-....+. ......+....|..+...|+ . |...+.+++......+
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn-~--a~~ll~~a~~~L~~~~ 73 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGR-P--GLRNLRKAEARLEGLP 73 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTC-C--CHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCc-H--HHHHHHHHHHHHHhCC
Confidence 4555666788888888887766554221 12334445555666666777 6 8888888887665544
No 409
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=50.62 E-value=1e+02 Score=28.86 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=33.1
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy875 197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH 244 (480)
Q Consensus 197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (480)
+.-++..|+.|+.|+..++..+...+...+......++..++.+|.+.
T Consensus 94 ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y~~I 141 (428)
T 2wm9_A 94 CADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKV 141 (428)
T ss_dssp HHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 333344444388888888888887777767677777777777777654
No 410
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=50.36 E-value=59 Score=30.02 Aligned_cols=57 Identities=4% Similarity=-0.052 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875 55 LAVDYFNKELRLH-ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD 112 (480)
Q Consensus 55 ~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~ 112 (480)
.++..|.+|+... .-.......-|..+|..||.. +++.+|+.++-.|-......+-.
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~-~~~reAl~~WA~Aa~Vi~~YNY~ 354 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRN-RNVREALQAWADTATVIQDYNYC 354 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhc-chHHHHHHHHHHHHHHHHHcCCC
Confidence 4678888888774 112222344566778875555 99999999998888776655433
No 411
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=48.03 E-value=21 Score=23.84 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 155 YISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 155 ~~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
-..+|..+...|++++|..+|-+|+..+..
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 346888888899999999999999888554
No 412
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=47.50 E-value=1.6e+02 Score=26.49 Aligned_cols=147 Identities=11% Similarity=0.007 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHh------------------hcc-H
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQ------------------EKS-F 92 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~------------------~~~-~ 92 (480)
.+..+.|..++.-|..+++|++|++.+......+ .+....-+.....+-.+|... ... -
T Consensus 32 YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~ 111 (336)
T 3lpz_A 32 YEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGE 111 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTC
T ss_pred cHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCC
Confidence 4456667777777888888888888776655443 211111122222222332111 010 0
Q ss_pred HHHHHHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc--------------cccccHHHHHHH
Q psy875 93 EIVQSTHEKALDLARQNK-DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS--------------DLCKDLASCYIS 157 (480)
Q Consensus 93 ~~A~~~~~kAl~~~~~~~-~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~--------------~~~~~~~~~~~~ 157 (480)
..=..+.++|+....+.+ .+..-...+..+|..|.+.+++.+|..+|--.-.. ...+.....+..
T Consensus 112 p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfia 191 (336)
T 3lpz_A 112 PVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCA 191 (336)
T ss_dssp HHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 011234445554443321 12222344567899999999999998887411000 000122233333
Q ss_pred -HHHHHHhhccHHHHHHHHHHHHh
Q psy875 158 -LAQTYKDNKQYNLAVDYFNKELR 180 (480)
Q Consensus 158 -la~~y~~~~~~~~A~~~~~~al~ 180 (480)
.-.-|...++...|...+..-.+
T Consensus 192 RaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 192 RAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 23456677888888776665443
No 413
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=47.14 E-value=1.4e+02 Score=25.70 Aligned_cols=53 Identities=9% Similarity=0.069 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHH
Q psy875 207 FELVVSTHEKALDLARQ--NKDDKLIRTVMRSMKKL-YKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 207 ~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~ 259 (480)
-+.|...|++|..+++. .+.+|.......+.+.+ |.-++++++|....+++..
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 35788899999999864 33445444444454544 5568999999988887764
No 414
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=47.03 E-value=1.4e+02 Score=25.74 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHh------hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q psy875 53 YNLAVDYFNKELRLH------ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDL 105 (480)
Q Consensus 53 ~~~A~~~~~~al~~~------~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~ 105 (480)
.+.|.+.|++|.++. .+.+|-......+.+..||..+++.++|....++|+.-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467778888888775 12334444455666777777778888888888888765
No 415
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=45.89 E-value=60 Score=26.77 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q psy875 187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKF 247 (480)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (480)
...+...+.+|.++..+++ |.+|.+.+..|+....+.. ......++..|.-+-.-+|++
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~-y~~A~~~L~~A~~~~~~~~-~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSD-FKQAEEYLSFAFEHCHRSS-QKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHCCHhH-HHHHHHHHHHHHHHHHHcCCC
Confidence 4556778899999999999 9999999999987643221 223444555554444445554
No 416
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=45.39 E-value=73 Score=21.98 Aligned_cols=20 Identities=10% Similarity=0.336 Sum_probs=14.4
Q ss_pred HHhCCchHHHHHHHHHHHHHH
Q psy875 201 ELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~ 221 (480)
-..|+ |++|+.+|.++++.+
T Consensus 27 D~~g~-y~eAl~lY~~Aie~l 46 (86)
T 4a5x_A 27 DSESR-YPQALVCYQEGIDLL 46 (86)
T ss_dssp HHTTC-HHHHHHHHHHHHHHH
T ss_pred HHcCC-HHHHHHHHHHHHHHH
Confidence 45677 888888888887654
No 417
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=44.69 E-value=1.1e+02 Score=28.55 Aligned_cols=32 Identities=13% Similarity=-0.033 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q psy875 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELR 65 (480)
Q Consensus 34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 65 (480)
+....-...|+..+...|+|.+|--++..+..
T Consensus 8 dl~~~wl~~La~~h~~~~n~~EAa~cl~~~aa 39 (428)
T 2wm9_A 8 ELRKTWLDSMARIHVKNGDLSEAAMCYVHVTA 39 (428)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445567899999999999999998875444
No 418
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=44.42 E-value=95 Score=29.41 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCC
Q psy875 168 YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 205 (480)
Q Consensus 168 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (480)
|++|+++++++-. .+.+.....+.+++..|.-.|+
T Consensus 455 Y~~Ai~~L~k~~~---tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 455 YKAAINDLQKAAQ---QDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHTT---CCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc---cCCHHHHHHHHHHhhhhhhccH
Confidence 4444444444321 2456666666666655544444
No 419
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=44.30 E-value=1.7e+02 Score=25.96 Aligned_cols=131 Identities=10% Similarity=-0.068 Sum_probs=81.5
Q ss_pred HhhccchhhhhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHH
Q psy875 7 LSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDL 84 (480)
Q Consensus 7 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~ 84 (480)
+.-|.. |++.+.+-.-.+.-.+.+-+.+.....+.-+..+.+.|++..|-....-.++.+ .+.... ......+..+
T Consensus 24 I~~G~y-YEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~-~~~~~rl~~l 101 (312)
T 2wpv_A 24 IKAGDY-YEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD-DISVARLVRL 101 (312)
T ss_dssp HHHTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS-HHHHHHHHHH
T ss_pred hhccCh-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Confidence 344444 555444332222222233455777888899999999999999999877777765 222222 2233455555
Q ss_pred HHHhhcc-HHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy875 85 YELQEKS-FEIVQSTHEKALDLARQNKD-DKLIRTVMRSIKKLYKKHDNLDSACSELH 140 (480)
Q Consensus 85 y~~~~~~-~~~A~~~~~kAl~~~~~~~~-~~~~~~~~~~l~~~y~~~~~~~~A~~~~~ 140 (480)
...... -..=..+.++|+....+.++ +......+..+|..|...|++.+|..+|-
T Consensus 102 -~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 102 -IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp -HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 222111 11224778888877765543 33345667899999999999999999886
No 420
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=44.27 E-value=48 Score=23.42 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Q psy875 38 SCYISLAQTYKDNKQYNLAVDYFNKELRL 66 (480)
Q Consensus 38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 66 (480)
.-...+|..+...|+++.|+.+|-+|+.+
T Consensus 21 l~eV~lGE~L~~~g~~e~av~Hf~nAl~V 49 (95)
T 1om2_A 21 LEEIQLGEELLAQGDYEKGVDHLTNAIAV 49 (95)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34467888888889999999999999888
No 421
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=43.18 E-value=1.9e+02 Score=26.04 Aligned_cols=89 Identities=9% Similarity=-0.002 Sum_probs=53.9
Q ss_pred HHHHHHHHhhhhc---CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHH-------HH-H---HHHHcCCcHHHHHHHHHH
Q psy875 172 VDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKPFELVVSTHEK-------AL-D---LARQNKDDKLIRTVMRSM 237 (480)
Q Consensus 172 ~~~~~~al~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~-------al-~---~~~~~~~~~~~~~~~~~l 237 (480)
..+.++++....+ .+...+..+..+|..|++.++ |.+|..+|-- .+ + -......+..........
T Consensus 115 ~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~-~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRa 193 (336)
T 3lpz_A 115 KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGE-FEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARA 193 (336)
T ss_dssp HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTC-HHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 3455556555332 233445677788999999998 9999887631 11 1 111122223333333445
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHH
Q psy875 238 KKLYKKHDKFTELEQIKTELKSLE 261 (480)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~~~~l~ 261 (480)
.--|...++...|...+..+.+.-
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHH
Confidence 556788999999999888877643
No 422
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=42.97 E-value=2e+02 Score=26.43 Aligned_cols=33 Identities=6% Similarity=-0.088 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ 223 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 223 (480)
+.+++..|......++ +.+|+.+++.|.+..+.
T Consensus 257 A~A~y~~a~~~~e~~k-~GeaIa~L~~A~~~l~~ 289 (392)
T 1zb1_A 257 SLSAYYHGLHLEEENR-VGEAIAFLDFSMQQLIS 289 (392)
T ss_dssp HHHHHHHHHHHHHTTC-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHH
Confidence 4456667777778888 89999999888876554
No 423
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=42.74 E-value=30 Score=24.45 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875 155 YISLAQTYKDNKQYNLAVDYFNKELRLHA 183 (480)
Q Consensus 155 ~~~la~~y~~~~~~~~A~~~~~~al~~~~ 183 (480)
-..+|..+...|+++.|+.+|-+|+.++.
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 34688888899999999999988888754
No 424
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=41.39 E-value=85 Score=21.63 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLH 67 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 67 (480)
.+..+...|.-.-..|+|++|+.+|.++++++
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~l 46 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLL 46 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34455666666778899999999999999986
No 425
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=40.95 E-value=1.1e+02 Score=22.63 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLH 67 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 67 (480)
.+..+...|.-.-..|+|++|+.+|..|++++
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l 48 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYF 48 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 34455666666677899999999999999986
No 426
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=40.88 E-value=91 Score=21.83 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLH 67 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 67 (480)
.+..+...|.-.-..|+|++|+.+|..+++++
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l 45 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDML 45 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45556677777778899999999999999986
No 427
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=40.03 E-value=2.4e+02 Score=26.43 Aligned_cols=104 Identities=13% Similarity=-0.009 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hccCc------------------hHHHHHHHHHHH
Q psy875 24 LHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-ARNFP------------------EAVKTLGEIGDL 84 (480)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~------------------~~~~~~~~lg~~ 84 (480)
+..-...+..+....-...|+..+...++|-+|--++.....+. -...+ .....+..+...
T Consensus 22 ~~~y~~~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~ 101 (436)
T 2yin_A 22 LNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGY 101 (436)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHH
Q ss_pred HHHhhccHHHHHHHHHHHHHhhhcC-CCchHHHHHHHHHHHHHHh
Q psy875 85 YELQEKSFEIVQSTHEKALDLARQN-KDDKLIRTVMRSIKKLYKK 128 (480)
Q Consensus 85 y~~~~~~~~~A~~~~~kAl~~~~~~-~~~~~~~~~~~~l~~~y~~ 128 (480)
+.+.+.|+.|+..++..+..+... .|-..++.++..++.+|..
T Consensus 102 -f~kg~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~ 145 (436)
T 2yin_A 102 -FDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYES 145 (436)
T ss_dssp -HHHHTCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred -HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 428
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.46 E-value=1.7e+02 Score=24.49 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 149 ~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
+....++...+.. . +++.+.|.-.... +-....+..|...|..+...|+ +.+|...|+.++..
T Consensus 117 ~RyLklWl~Ya~~---~---~~p~~if~~L~~~--~IG~~~AlfYe~wA~~lE~~g~-~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 117 VRYLRIWMQYVNY---I---DEPVELFSFLAHH--HIGQESSIFYEEYANYFESRGL-FQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHHHTT---C---SCHHHHHHHHHHT--TCSTTBHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---c---CCHHHHHHHHHHC--CcchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc
Confidence 4445555555542 1 3444555443322 2234557788899999999999 99999999999864
No 429
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=39.38 E-value=85 Score=29.02 Aligned_cols=54 Identities=4% Similarity=-0.023 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875 55 LAVDYFNKELRLH-ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN 109 (480)
Q Consensus 55 ~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~ 109 (480)
.++..|++|+... .-.......-|..+|..++.. ++|.+|+.++-.|-......
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~-~~~~eAl~~wa~aa~Vi~~Y 336 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRN-RNVREALQAWADTATVIQDY 336 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHh-hhHHHHHHHhhhhhhhhhhc
Confidence 4677888888875 222222345667777775555 88999999988887665543
No 430
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=38.71 E-value=1.9e+02 Score=24.85 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHH
Q psy875 208 ELVVSTHEKALDLARQ--NKDDKLIRTVMRSMKKL-YKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 208 ~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~ 259 (480)
+.|...|++|.+++.. .+..|.......+.+.+ |.-++++++|....+++..
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6778899999998754 23345444444455555 4558999999999888765
No 431
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.70 E-value=1.4e+02 Score=23.50 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875 189 AVKTLGEIGDLYELQEKPFELVVSTHEKALD 219 (480)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~ 219 (480)
.+..|...|..+...|+ +.+|.+.|+.++.
T Consensus 95 ~AlfY~~wA~~lE~~~~-~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 95 LAQFYISWAEEYEAREN-FRKADAIFQEGIQ 124 (164)
T ss_dssp BHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 34455555556666666 6666666655543
No 432
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=37.30 E-value=2e+02 Score=24.71 Aligned_cols=53 Identities=9% Similarity=0.024 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHH
Q psy875 207 FELVVSTHEKALDLARQN-KDDKLIRTVMRSMKKL-YKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 207 ~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~ 259 (480)
-+.|...|++|.+++... +.+|.......+.+.+ |.-++++++|....+++..
T Consensus 172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367888999999998222 2344444444444544 4568999999999888765
No 433
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=36.90 E-value=1.9e+02 Score=24.38 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHH
Q psy875 207 FELVVSTHEKALDLARQ--NKDDKLIRTVMRSMKKL-YKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 207 ~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~ 259 (480)
-+.|...|++|.++++. .+.+|.......+.+.+ |.-++++++|....+++..
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36788999999999864 33455444444454544 4558999999998888765
No 434
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=34.00 E-value=3.6e+02 Score=26.67 Aligned_cols=130 Identities=7% Similarity=-0.059 Sum_probs=77.8
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875 41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR 120 (480)
Q Consensus 41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~ 120 (480)
...+.......+.+.|...+.+...-..-+..........+|.- ....+...++..++.++... ..+.. .. -.
T Consensus 218 ~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~-~~~~~~~~~~~~~~~~~~~~---~~~~~-~~--e~ 290 (618)
T 1qsa_A 218 AAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWR-LMGNDVTDEQAKWRDDAIMR---SQSTS-LI--ER 290 (618)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-SCSTTCCHHHHHHHHHHHHT---CCCHH-HH--HH
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHH-HHHcCCChHHHHHHHhcccc---CCChH-HH--HH
Confidence 33444455566888888888776543111112223333444544 33324255666777765422 22222 22 12
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR 180 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~ 180 (480)
..+. .+..|+++.|...+...-... .......+-+|..+..+|+.++|..+|.++..
T Consensus 291 ~~r~-Alr~~d~~~a~~~~~~l~~~~--~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 291 RVRM-ALGTGDRRGLNTWLARLPMEA--KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHH-HHHHTCHHHHHHHHHHSCTTG--GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHH-HHHCCCHHHHHHHHHHccccc--cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3333 345699999999998654322 23356678899999999999999999998754
No 435
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=33.87 E-value=2.6e+02 Score=24.95 Aligned_cols=28 Identities=7% Similarity=0.088 Sum_probs=24.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHh
Q psy875 40 YISLAQTYKDNKQYNLAVDYFNKELRLH 67 (480)
Q Consensus 40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~ 67 (480)
....|.-+...|++++|+..|+..+...
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i 144 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRI 144 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 4556788888999999999999998875
No 436
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=33.83 E-value=1.1e+02 Score=20.81 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Q psy875 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLH 67 (480)
Q Consensus 36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 67 (480)
.+..+...|.-.-..|+|++|+.+|..+++++
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l 43 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDYL 43 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34445566666667899999999999999985
No 437
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.24 E-value=73 Score=24.82 Aligned_cols=47 Identities=6% Similarity=-0.046 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 171 AVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 171 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
+.+.|.-.... +-....+..|...|..+...|+ +++|.+.|+.+++.
T Consensus 84 p~~if~~L~~~--~IG~~~AlfYe~wA~~lE~~g~-~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 84 LHQFFEFLYNH--GIGTLSSPLYIAWAGHLEAQGE-LQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHTT--TTTTTBHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc
Confidence 55555544322 1234557788899999999999 99999999999863
No 438
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=33.22 E-value=1.1e+02 Score=20.75 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=14.5
Q ss_pred HHhCCchHHHHHHHHHHHHHH
Q psy875 201 ELQEKPFELVVSTHEKALDLA 221 (480)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~ 221 (480)
-..|+ |++|+.+|.++++.+
T Consensus 24 D~~g~-y~eAl~~Y~~aie~l 43 (85)
T 2v6x_A 24 DTATQ-YEEAYTAYYNGLDYL 43 (85)
T ss_dssp HHTTC-HHHHHHHHHHHHHHH
T ss_pred HHcCC-HHHHHHHHHHHHHHH
Confidence 35567 888888888887753
No 439
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.46 E-value=1.9e+02 Score=22.72 Aligned_cols=64 Identities=6% Similarity=-0.109 Sum_probs=45.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcccccc----cH--HHHH-HHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875 121 SIKKLYKKHDNLDSACSELHTVLSSDLCK----DL--ASCY-ISLAQTYKDNKQYNLAVDYFNKELRLHAR 184 (480)
Q Consensus 121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~----~~--~~~~-~~la~~y~~~~~~~~A~~~~~~al~~~~~ 184 (480)
.-|..++..|+|-+|-+.++..-...+.+ .. +.+. ...|....+.|+..-|...+.+++.....
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~ 107 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRG 107 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 45566777799999999999766544332 22 3333 44456667889999999999999987554
No 440
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=30.08 E-value=2e+02 Score=22.53 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=41.4
Q ss_pred HHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHH-HHHHHHHHhcccccccHHHHHHHHHHHHHh
Q psy875 86 ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDS-ACSELHTVLSSDLCKDLASCYISLAQTYKD 164 (480)
Q Consensus 86 ~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~-A~~~~~~~l~~~~~~~~~~~~~~la~~y~~ 164 (480)
|.. .+|...+..+++ ......-...-+.||..|.....+.+ ..+.....+....++.....| +|.-
T Consensus 19 fl~-~dYs~VI~~L~~-------~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~YW-----IyiG 85 (161)
T 2ynq_A 19 FLQ-NKYSDVITTLED-------YAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYMLYW-----IYIG 85 (161)
T ss_dssp HTT-TCHHHHHHHHTT-------SCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHHHH-----HHHH
T ss_pred HHH-hhHHHHHHHHhc-------CChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHHHH-----HHHc
Confidence 555 666666554432 22122223456678888888776653 333333333333334433333 4455
Q ss_pred hccHHHHHHHHH
Q psy875 165 NKQYNLAVDYFN 176 (480)
Q Consensus 165 ~~~~~~A~~~~~ 176 (480)
+|++++|+....
T Consensus 86 Rg~~~eAlDiA~ 97 (161)
T 2ynq_A 86 RSQSEEALELAR 97 (161)
T ss_dssp HTCHHHHHHHHH
T ss_pred CCchHHHHHHHH
Confidence 688888877643
No 441
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=29.93 E-value=76 Score=21.92 Aligned_cols=43 Identities=9% Similarity=-0.034 Sum_probs=22.9
Q ss_pred HHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy875 98 THEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELH 140 (480)
Q Consensus 98 ~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~ 140 (480)
.+++|++..+...+-...+..|..=|..|+..|++..|+.++.
T Consensus 17 ~l~eaL~~i~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~is 59 (86)
T 2oo2_A 17 RIEERVKEIEGDEGFMRNIEAYISDSRYFLEKGDLVRAFECVV 59 (86)
T ss_dssp HHHHHGGGEEECHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444333222234445566666666677777766666554
No 442
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=29.36 E-value=1.5e+02 Score=20.75 Aligned_cols=21 Identities=5% Similarity=0.316 Sum_probs=14.9
Q ss_pred HHhCCchHHHHHHHHHHHHHHH
Q psy875 201 ELQEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~ 222 (480)
...|+ |++|+.+|..+++.+.
T Consensus 26 D~~g~-y~eAl~~Y~~Aie~l~ 46 (93)
T 1wfd_A 26 DAESR-YQQALVCYQEGIDMLL 46 (93)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHH
T ss_pred HHhCC-HHHHHHHHHHHHHHHH
Confidence 35567 8888888888877543
No 443
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=29.18 E-value=2.4e+02 Score=23.14 Aligned_cols=69 Identities=10% Similarity=-0.003 Sum_probs=47.3
Q ss_pred cccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 148 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 148 ~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
++....++...+..+ ..+...++.+.|.-.... +-....+..|...|..+...|+ +++|.+.|+.+++.
T Consensus 76 D~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~--~IG~~~AlfYe~wA~~lE~~g~-~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 76 DPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK--GIGTKLSLFYEEFSKLLENAQF-FLEAKVLLELGAEN 144 (202)
T ss_dssp CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH--TSSTTBHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc
Confidence 345566666666654 223355666766654432 1234557788899999999999 99999999999763
No 444
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=28.40 E-value=2.7e+02 Score=23.50 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHH
Q psy875 208 ELVVSTHEKALDLARQ--NKDDKLIRTVMRSMKKL-YKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 208 ~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~ 259 (480)
+.|...|++|.+++.. .+.+|.......+.+.+ |.-++++++|.+..+++..
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5778899999998864 23345444444444444 5577999999998888764
No 445
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=28.17 E-value=2e+02 Score=22.04 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 155 YISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 155 ~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
+...|.+|...|+.+.|--+|-+-+.+
T Consensus 45 L~r~A~~y~~EGd~E~AYilymRy~~L 71 (144)
T 2a9u_A 45 IFKTAEECRLDRDEERAYVLYMKYVTV 71 (144)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333455555555555555555555544
No 446
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=27.20 E-value=1.6e+02 Score=20.59 Aligned_cols=64 Identities=6% Similarity=-0.196 Sum_probs=39.6
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccC-chHHHHHHHH--HHHHHHhhccHHHHHHHHHHHHHhhhcCC
Q psy875 43 LAQTYKDNKQYNLAVDYFNKELRLHARNF-PEAVKTLGEI--GDLYELQEKSFEIVQSTHEKALDLARQNK 110 (480)
Q Consensus 43 lg~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~l--g~~y~~~~~~~~~A~~~~~kAl~~~~~~~ 110 (480)
-|..++..|+|=+|-+.++..-.- .... ......+..+ |.. +...|+. |...+.+|+......+
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~-~~~~~~~~~qGLIq~Ava~~-h~~~gn~--a~~ll~~a~~~L~~~~ 73 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLK-ATGEERRLLQGVILLAAALH-QRRLGRP--GLRNLRKAEARLEGLP 73 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHH-HHHTTCC--CHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHH-HHHcCcH--HHHHHHHHHHHHHhCC
Confidence 456667779999999888888776 2111 1122233333 333 4455777 8888999987655443
No 447
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.77 E-value=90 Score=22.93 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=7.8
Q ss_pred cHHHHHHHHHHHHhh
Q psy875 167 QYNLAVDYFNKELRL 181 (480)
Q Consensus 167 ~~~~A~~~~~~al~~ 181 (480)
.|++|..|+.++|.+
T Consensus 18 ~h~~AF~~Is~AL~~ 32 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNT 32 (116)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 345555555555554
No 448
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.52 E-value=1.1e+02 Score=22.58 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=10.1
Q ss_pred hhccHHHHHHHHHHHHhh
Q psy875 164 DNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 164 ~~~~~~~A~~~~~~al~~ 181 (480)
+.|+.++|+.+|++++..
T Consensus 34 E~g~k~~Al~lYk~GI~e 51 (116)
T 2dl1_A 34 ELGQKEEAKNYYKQGIGH 51 (116)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 346666666666655543
No 449
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=25.90 E-value=1.6e+02 Score=19.92 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875 193 LGEIGDLYELQEKPFELVVSTHEKALDLAR 222 (480)
Q Consensus 193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~ 222 (480)
...+|+=|...|+ |+.|+.||+.++....
T Consensus 15 ~~k~ARe~Al~Gn-Ydta~~yY~g~~~qI~ 43 (78)
T 2rpa_A 15 NVKLAREYALLGN-YDSAMVYYQGVLDQMN 43 (78)
T ss_dssp HHHHHHHHHHHTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-hHHHHHHHHHHHHHHH
Confidence 4567888888999 9999999999987544
No 450
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=25.39 E-value=3.3e+02 Score=23.47 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhhh------cCcHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHH
Q psy875 168 YNLAVDYFNKELRLHA------RNFPEAVKTLGEIGDLYEL-QEKPFELVVSTHEKALDL 220 (480)
Q Consensus 168 ~~~A~~~~~~al~~~~------~~~~~~~~~~~~l~~~~~~-~~~~~~~A~~~~~~al~~ 220 (480)
-+.|...|++|.++.. ..+|.......|.+..|+. +++ .++|....++|.+-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~-p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGN-PEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence 3567788888877642 2345555556667777665 455 89998888888765
No 451
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=24.80 E-value=4e+02 Score=24.27 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHhccc------------cHHHHHHHHHHHHHHh
Q psy875 30 SDLCKDLASCYISLAQTYKDNK------------QYNLAVDYFNKELRLH 67 (480)
Q Consensus 30 ~~~~~~~~~~~~~lg~~~~~~~------------~~~~A~~~~~~al~~~ 67 (480)
.+..-+.+.+++++|.+|...+ ..+.|..+|++|-.++
T Consensus 107 ~sl~fE~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f 156 (376)
T 3r9m_A 107 QDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIF 156 (376)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 4455566777778777765432 3678888999887765
No 452
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=24.22 E-value=2.5e+02 Score=21.66 Aligned_cols=29 Identities=10% Similarity=-0.078 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875 190 VKTLGEIGDLYELQEKPFELVVSTHEKALD 219 (480)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~ 219 (480)
+..+..+|.+|.+.|. ..+|.+.+.+|-+
T Consensus 125 ~~~l~kia~Ay~Klg~-~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 125 ASILVAIANALRRVGD-ERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 4556667777777777 7777777666654
No 453
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=23.75 E-value=1.4e+02 Score=28.14 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 150 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
....++..+|++|+.+++|++|..+.++++..
T Consensus 188 tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 188 NKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 33456666777777777777777777777653
No 454
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=23.27 E-value=3.6e+02 Score=23.27 Aligned_cols=120 Identities=10% Similarity=0.070 Sum_probs=73.5
Q ss_pred HHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHH
Q psy875 46 TYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKL 125 (480)
Q Consensus 46 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~ 125 (480)
-..+.|..++|++.....++- .|..+..-..+-.++... |+|+.|.+.++-+.++.+.. ...+..|..+-.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~----~P~da~~R~~LfqLLcv~-G~w~RA~~QL~~~a~l~p~~---~~~a~~yr~lI~- 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA----SPKDASLRSSFIELLCID-GDFERADEQLMQSIKLFPEY---LPGASQLRHLVK- 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT----CTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHH-
T ss_pred HHHhCCCHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCchh---hHHHHHHHHHHH-
Confidence 345789999999999998887 555555555566663444 99999999999888875432 222222322211
Q ss_pred HHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875 126 YKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA 183 (480)
Q Consensus 126 y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~ 183 (480)
|...=.+.+..... +.--.....-+......|+.++|...-.++++..+
T Consensus 77 ---------aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 77 ---------AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp ---------HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred ---------HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 11111222322221 11122233346666778999999999999988744
No 455
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=22.61 E-value=2.7e+02 Score=21.47 Aligned_cols=54 Identities=11% Similarity=0.018 Sum_probs=36.7
Q ss_pred HHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 126 YKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 126 y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
...+|+-++=.+.+...+.. .+..+..+..+|.+|.+.|+..+|.+.+.+|-+-
T Consensus 101 lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34555655555555543321 1223577889999999999999999999887653
No 456
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=22.60 E-value=1.6e+02 Score=27.81 Aligned_cols=31 Identities=13% Similarity=-0.026 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 151 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
...++..+|++|+.+++|++|..+.++++..
T Consensus 190 k~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 190 TDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455666677777777777777777666643
No 457
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=22.57 E-value=6.9e+02 Score=26.23 Aligned_cols=35 Identities=11% Similarity=-0.065 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhh
Q psy875 72 PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLAR 107 (480)
Q Consensus 72 ~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~ 107 (480)
+..-.+-.-.+.+||.. |+|++|+.|.-.|=..+.
T Consensus 67 ~~r~laalvaSkvyy~L-g~~~~al~yaL~aG~~fd 101 (963)
T 4ady_A 67 SDREMAALIASKVYYNL-GEYESAVKYALAAKDRFD 101 (963)
T ss_dssp TTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHGGGSC
T ss_pred chHHHHHHHHHHHheec-cchHHHHHHHHhCCCcCC
Confidence 33444444556664444 677777666655544443
No 458
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=22.53 E-value=4.5e+02 Score=24.06 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHHh
Q psy875 32 LCKDLASCYISLAQTYKDNK------QYNLAVDYFNKELRLH 67 (480)
Q Consensus 32 ~~~~~~~~~~~lg~~~~~~~------~~~~A~~~~~~al~~~ 67 (480)
..-+.+.+++++|.+|...+ ..+.|..+|++|-.++
T Consensus 118 l~fE~a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f 159 (392)
T 1zb1_A 118 LAFEKSCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCF 159 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 44456666666666664432 5788999999998775
No 459
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=21.70 E-value=1.7e+02 Score=27.48 Aligned_cols=33 Identities=3% Similarity=0.043 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
.....++..+|++|...++ |++|..+.++++..
T Consensus 187 ~tk~aa~allarvyL~~~~-~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 187 MNKYAARALLARIYLYHDD-NRKAFDLADQLIKD 219 (454)
T ss_dssp CCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHhccc-HHHHHHHHHHHHhC
Confidence 4456678889999999999 99999999998864
No 460
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=21.27 E-value=70 Score=22.24 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHh
Q psy875 168 YNLAVDYFNKELR 180 (480)
Q Consensus 168 ~~~A~~~~~~al~ 180 (480)
|++|..|+.++|.
T Consensus 13 h~~AF~~Is~aL~ 25 (89)
T 3eab_A 13 HKQAFEYISIALR 25 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 461
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=21.08 E-value=1.8e+02 Score=27.52 Aligned_cols=33 Identities=3% Similarity=0.010 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
.....++..+|++|...++ |++|..+.++++..
T Consensus 199 ~tk~aa~allarvyL~~~~-~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 199 INYWAAQALLSRVYLNMGE-YQKAYDAATDVIKN 231 (477)
T ss_dssp CCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhC
Confidence 3445566677788888888 88888888887765
No 462
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=21.06 E-value=1.7e+02 Score=28.02 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRL 181 (480)
Q Consensus 149 ~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~ 181 (480)
.....++..+|++|+.+++|++|..+.++++..
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344567788899999999999999999988865
No 463
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=20.75 E-value=3.9e+02 Score=22.69 Aligned_cols=53 Identities=6% Similarity=0.066 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHH
Q psy875 207 FELVVSTHEKALDLARQ--NKDDKLIRTVMRSMKKL-YKKHDKFTELEQIKTELKS 259 (480)
Q Consensus 207 ~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~ 259 (480)
-+.|...|++|.+++.. .+.+|.......+.+.+ |.-++++++|....+++..
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36788899999998864 23345444444444544 5568999999999888765
No 464
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=20.74 E-value=1.6e+02 Score=27.77 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875 151 LASCYISLAQTYKDNKQYNLAVDYFNKELR 180 (480)
Q Consensus 151 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~ 180 (480)
...++..+|++|+.+|+|++|..+.++++.
T Consensus 195 k~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 195 RWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 345555666666666666666666666665
No 465
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=20.05 E-value=2e+02 Score=27.19 Aligned_cols=34 Identities=9% Similarity=0.141 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875 186 FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL 220 (480)
Q Consensus 186 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 220 (480)
......++..+|++|...|+ |++|..+.++++..
T Consensus 192 r~tk~aa~allArvyL~~~~-~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGE-YNEALTMAENAIKG 225 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhc
Confidence 34456678889999999999 99999999998864
Done!