RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy875
(480 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 96.3 bits (240), Expect = 7e-24
Identities = 43/96 (44%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA+ G+L +V+ LL+ G V +D+ G PLH AA +GH +IV+ L+ GAD
Sbjct: 7 GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV 66
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N +D G PLH AA +G+ D+V+ L+ GA+V+
Sbjct: 67 N--ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN 100
Score = 88.6 bits (220), Expect = 3e-21
Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
G T LH+AA G+L +V+ LL++G V +D G PLH AA +G+ D+V+ L+ GAD
Sbjct: 39 DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD 98
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
N +D G PLH AA +GH ++V+ L+
Sbjct: 99 VN--ARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 66.6 bits (163), Expect = 2e-13
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 413 VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQAL 472
+D G PLH AA++GH ++V+ L+ GAD N +D+ G PLH AA +GH +IV+ L
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVN--AKDNDGRTPLHLAAKNGHLEIVKLL 59
Query: 473 VSAGAEV 479
+ GA+V
Sbjct: 60 LEKGADV 66
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 88.5 bits (220), Expect = 1e-21
Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKV 448
LH+AA GNL LV+ LL++G V + D+ LH AA +G+ +IV+ L+ GAD N K
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAK- 57
Query: 449 QDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
D G LH AA +G+ +IV+ L+ GA+++
Sbjct: 58 -DKDGNTALHLAARNGNLEIVKLLLEHGADIN 88
Score = 68.4 bits (168), Expect = 2e-14
Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
TALH+AA GNL +V+ LL+ G V +D G LH AA +G+ +IV+ L+ GAD N
Sbjct: 30 TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89
Query: 447 K 447
K
Sbjct: 90 K 90
Score = 34.9 bits (81), Expect = 0.012
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQD 415
G TALH+AA GNL +V+ LL+ G + ++D
Sbjct: 61 GNTALHLAARNGNLEIVKLLLEHGADINLKD 91
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 54.9 bits (133), Expect = 5e-10
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 418 GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
G LH+AA G ++V+ L+ G D N D G LH AA +G+ ++++ L+
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINR--TDEDGNTALHIAAENGNLEVLKLLL 54
Score = 52.6 bits (127), Expect = 2e-09
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV 438
TALH AA G L LV+ LL++G + D G LH AA +G+ ++++ L+
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 29.9 bits (68), Expect = 0.27
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 453 GWLPLHEAANHGHTDIVQALVSAGAEV 479
G LH+AA G ++V+ L+ G ++
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDI 27
Score = 26.4 bits (59), Expect = 5.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 385 GETALHVAAARGNLTLVQSLL 405
G TALH+AA GNL +++ LL
Sbjct: 34 GNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 56.0 bits (134), Expect = 7e-09
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 385 GETALHVAAARGNLT-----LVQSLLKQG---HPVKVQDSAGWLPLHEAANHGHTDIVQA 436
G+T LH+AA GN + + LL+ G ++D G PLH AA +G DIV+
Sbjct: 106 GDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVEL 165
Query: 437 LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L+ AGADPN + +S G L AA +G ++V+ L+ G +S
Sbjct: 166 LLEAGADPNSR--NSYGVTALDPAAKNGRIELVKLLLDKGLHLS 207
Score = 40.2 bits (93), Expect = 0.001
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS 439
L G T LH AA G+ +V+ LL+ G ++S G L AA +G ++V+ L+
Sbjct: 142 LRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD 201
Query: 440 AG 441
G
Sbjct: 202 KG 203
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 54.6 bits (131), Expect = 6e-08
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN 445
+T LH A +G+L ++ L + G V ++D G P+H A H DI++ L+ GA N
Sbjct: 125 KTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN 184
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
V+D+ G PLH AA +G ++ L+ G +
Sbjct: 185 --VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIM 217
Score = 40.3 bits (94), Expect = 0.002
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
GE+ LH AA G+ ++ L+ G+ + + G+ PLH A H + I L+ A
Sbjct: 190 GESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAI--ELLINNASI 247
Query: 445 NDKVQDSAGWLPLHEAANHG-HTDIVQALVSAGAEVS 480
ND QD G PLH A N DI+ L+ A++S
Sbjct: 248 ND--QDIDGSTPLHHAINPPCDIDIIDILLYHKADIS 282
Score = 35.7 bits (82), Expect = 0.052
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS 439
+E G +H+A +++ LL++G V+D+ G PLH AA +G ++ L+
Sbjct: 152 IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLID 211
Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDI 468
G +K ++ G+ PLH A H + I
Sbjct: 212 HGNHIMNKCKN--GFTPLHNAIIHNRSAI 238
Score = 29.9 bits (67), Expect = 2.8
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 396 GNLTLVQSLLK-QGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD---PNDKVQDS 451
G++ ++ ++K +G+ + + PL +A G IV+ + GAD N K+
Sbjct: 12 GDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPH- 70
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAEVS 480
PL A G DI++ L+ G + S
Sbjct: 71 ----PLLTAIKIGAHDIIKLLIDNGVDTS 95
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 43.3 bits (103), Expect = 3e-06
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 418 GWLPLHEAANHGHTDIVQALVSAGADPNDK 447
G PLH AA +GH ++V+ L+ AGAD N +
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNAR 31
Score = 38.7 bits (91), Expect = 1e-04
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 453 GWLPLHEAANHGHTDIVQALVSAGAEV 479
G PLH AA +GH ++V+ L+ AGA+V
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADV 28
Score = 37.1 bits (87), Expect = 5e-04
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQD 415
G T LH+AA G+L +V+ LL+ G V +D
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 48.3 bits (115), Expect = 6e-06
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 377 TSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQA 436
++ ++ +G TALH A + L + LL G V + D PLH A H + IV
Sbjct: 160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHI 219
Query: 437 LVSAGADPNDKVQDSAGWLPLHEAANH-GHTDIVQALVSAGAEVS 480
L+ GA + + D G PLH + + DI++ L+ G +V+
Sbjct: 220 LLENGASTDAR--DKCGNTPLHISVGYCKDYDILKLLLEHGVDVN 262
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 41.6 bits (98), Expect = 2e-05
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEA 425
G T LH+AA G L LVQ LLK G + ++DS G L A
Sbjct: 15 NGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 39.3 bits (92), Expect = 1e-04
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 404 LLKQGHP-VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
LL+ G + D G PLH AA +G ++VQ L+ G D N ++DS G L A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLN--LRDSDGLTALDLA 56
Score = 28.1 bits (63), Expect = 1.4
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 437 LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
L+ G + D G PLH AA +G ++VQ L+ G
Sbjct: 1 LLEHGPIDLN-ATDGNGNTPLHLAAKYGALELVQWLLKPGV 40
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 45.8 bits (109), Expect = 3e-05
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
V LL G P+ ++D G+ PLH A + + + V+ L+ GA+PN + G PLH A
Sbjct: 175 VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLV--NKYGDTPLHIA 232
Query: 461 ANHGHTDIVQALVSAGAEVS 480
+ + +I + L++ G +
Sbjct: 233 ILNNNKEIFKLLLNNGPSIK 252
Score = 35.0 bits (81), Expect = 0.077
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHT-----DIVQALVSAGAD 443
L++A N+ +V+ LL G + PLH +N + +IV+ L+ GA+
Sbjct: 39 LYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGAN 98
Query: 444 PNDKVQDSAGWLPLHEAANH--GHTDIVQALVSAGAEV 479
N D+ G PL A + IV+ L+ GA V
Sbjct: 99 VN--APDNNGITPLLYAISKKSNSYSIVEYLLDNGANV 134
Score = 34.3 bits (79), Expect = 0.13
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
G T LH A N V+ LL G + + G PLH A + + +I + L++ G
Sbjct: 191 YGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250
Query: 444 PNDKVQ 449
++
Sbjct: 251 IKTIIE 256
Score = 28.9 bits (65), Expect = 6.1
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 397 NLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLP 456
+ ++ ++ + LPL+ A + D+V+ L+ GAD N ++++ L
Sbjct: 14 KVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLH 73
Query: 457 LHEAANHGHTD---IVQALVSAGAEVS 480
+ TD IV+ L+ GA V+
Sbjct: 74 YLSNIKYNLTDVKEIVKLLLEYGANVN 100
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 46.0 bits (109), Expect = 4e-05
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 383 PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
P + L A+ GN L++ LLK + DS G PLH AA+ G+ D V L+
Sbjct: 523 PNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHAC 582
Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIVQAL 472
+ + ++D+ G L A + H I + L
Sbjct: 583 NVH--IRDANGNTALWNAISAKHHKIFRIL 610
Score = 43.7 bits (103), Expect = 2e-04
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 29/125 (23%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL--VSAG 441
+G T LH+AA++G V LLK V ++D+ G L A + H I + L ++
Sbjct: 557 KGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASI 616
Query: 442 ADP---------------------------NDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
+DP N +D G L A H D+V+ L+
Sbjct: 617 SDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM 676
Query: 475 AGAEV 479
GA+V
Sbjct: 677 NGADV 681
Score = 36.4 bits (84), Expect = 0.036
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 425 AANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
A+ G+ +++ L+ A DP+ + DS G PLH AA+ G+ D V L+ V
Sbjct: 532 VASTGNAALLEELLKAKLDPD--IGDSKGRTPLHIAASKGYEDCVLVLLKHACNV 584
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 418 GWLPLHEAANHGHTDIVQALVSAGADPND 446
G PLH AA +G+ ++V+ L+ GAD N
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 34.5 bits (80), Expect = 0.005
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 453 GWLPLHEAANHGHTDIVQALVSAGAEV 479
G PLH AA +G+ ++V+ L+ GA++
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28
Score = 29.5 bits (67), Expect = 0.25
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQG 408
G T LH+AA GNL +V+ LL +G
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKG 25
>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat.
Length = 78
Score = 39.7 bits (93), Expect = 2e-04
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKP 206
DLA+ +LA + Y+ A++ K L L + PE + L + LY
Sbjct: 3 DLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD- 61
Query: 207 FELVVSTHEKALDLARQ 223
++ + EKAL L
Sbjct: 62 YDEALEYLEKALALREA 78
Score = 38.5 bits (90), Expect = 4e-04
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKS 91
DLA+ +LA + Y+ A++ K L L + PE + L + LY
Sbjct: 3 DLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDY 62
Query: 92 FEIVQSTHEKALDLARQ 108
E ++ EKAL L
Sbjct: 63 DEALE-YLEKALALREA 78
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 43.3 bits (102), Expect = 2e-04
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 393 AARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSA 452
AA G+ + LL G +D G PLH A +GH +V+ L+ GADP + D
Sbjct: 90 AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT--LLDKD 147
Query: 453 GWLPLHEAANHGHTDIVQALVS 474
G PL A +G ++VQ L
Sbjct: 148 GKTPLELAEENGFREVVQLLSR 169
Score = 39.5 bits (92), Expect = 0.003
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS 439
G T LH+A A G++ +V+ LL+ G + D G PL A +G ++VQ L
Sbjct: 115 GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSR 169
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
L + A G + L++ GADPN + D G PLH A +GH +V+ L+ GA+ +
Sbjct: 86 LCQLAASGDAVGARILLTGGADPNCR--DYDGRTPLHIACANGHVQVVRVLLEFGADPT 142
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 36.5 bits (85), Expect = 7e-04
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 418 GWLPLHEAANHGHTDIVQALVSAGADPN 445
G PLH AA +G+ ++V+ L+ GAD N
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADIN 29
Score = 33.4 bits (77), Expect = 0.011
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 453 GWLPLHEAANHGHTDIVQALVSAGAEV 479
G PLH AA +G+ ++V+ L+ GA++
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADI 28
Score = 30.7 bits (70), Expect = 0.082
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 385 GETALHVAAARGNLTLVQSLLKQG 408
G T LH+AA GNL LV+ LL+ G
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHG 25
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 40.4 bits (94), Expect = 0.002
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
+ LH+A G++ ++ L+ + ++D G PL A G I + L+ +GA+ +
Sbjct: 137 SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID- 195
Query: 447 KVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
+ L A + DIV+ + GA+
Sbjct: 196 YFGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227
Score = 40.4 bits (94), Expect = 0.002
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
G T LH+A L +++ L+ +G + ++ + PLH A G ++ L+ A
Sbjct: 101 DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC 160
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ ++D G PL A G I + L+ +GA +
Sbjct: 161 LD--IEDCCGCTPLIIAMAKGDIAICKMLLDSGANI 194
Score = 34.6 bits (79), Expect = 0.11
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 383 PRGETALHVAAARGNLTLVQSLLKQGHPVK-VQDSAGWLPLHEAANHGHTDIVQALVSAG 441
P E+ LH A G++ V+ LL G V G PLH A DI++ L++ G
Sbjct: 66 PDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG 125
Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
ADP+ + ++ + PLH A G ++ L+
Sbjct: 126 ADPD--IPNTDKFSPLHLAVMMGDIKGIELLI 155
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 40.4 bits (95), Expect = 0.002
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 385 GETALHVAAARGNL--TLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
G T LH A + +LV LL G + ++ G PLH AA + + L++ GA
Sbjct: 222 GNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGA 281
Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIVQA 471
D N S G PL + + V+A
Sbjct: 282 DIN--AVSSDGNTPLSLMVRNNNGRAVRA 308
Score = 39.2 bits (92), Expect = 0.004
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 384 RGETALHVAA--ARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTD--IVQALVS 439
R + LH + +V+ L++ G D G PLH A +V L+
Sbjct: 186 RFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLI 245
Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
AG N ++ G PLH AA + + L++ GA+++
Sbjct: 246 AGISIN--ARNRYGQTPLHYAAVFNNPRACRRLIALGADIN 284
Score = 35.8 bits (83), Expect = 0.048
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 366 LNLSATLETPTTSLLEKPRGETALHVAAARGN-LTLVQSLLKQGHPVKVQDSAGWLPLHE 424
L A + P G T LH+ L +++ L+K G V +D G PLH
Sbjct: 70 LEAGADVNAPERC------GFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV 123
Query: 425 -AANHG-HTDIVQALVSAGADPNDKVQDSAGWLPLHEA-ANHGHT-DIVQALVSAGAEVS 480
+ + +++ L+ GAD N D G PL + ++++ L+ AGA+V
Sbjct: 124 YLSGFNINPKVIRLLLRKGADVNAL--DLYGMTPLAVLLKSRNANVELLRLLIDAGADVY 181
Score = 33.1 bits (76), Expect = 0.35
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQA 436
G+T LH AA N + L+ G + S G PL + + V+A
Sbjct: 256 YGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRA 308
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found
in a variety of organisms including bacteria,
cyanobacteria, yeast, fungi, plants, and humans in
various subcellular locations; involved in a variety of
functions including protein-protein interactions, but
common features in the interaction partners have not
been defined; involved in chaperone, cell-cycle,
transciption, and protein transport complexes; the
number of TPR motifs varies among proteins (1,3-11,13
15,16,19); 5-6 tandem repeats generate a right-handed
helical structure with an amphipathic channel that is
thought to accomodate an alpha-helix of a target
protein; it has been proposed that TPR proteins
preferably interact with WD-40 repeat proteins, but in
many instances several TPR-proteins seem to aggregate to
multi-protein complexes; examples of TPR-proteins
include, Cdc16p, Cdc23p and Cdc27p components of the
cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal
targeting signals, the Tom70p co-receptor for
mitochondrial targeting signals, Ser/Thr phosphatase 5C
and the p110 subunit of O-GlcNAc transferase; three
copies of the repeat are present here.
Length = 100
Score = 36.2 bits (84), Expect = 0.005
Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 47/144 (32%)
Query: 39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQST 98
++L Y Y+ A++Y+ K L L P+ + Y K
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALEL----DPDNADAYYNLAAAYYKLGK-------- 49
Query: 99 HEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISL 158
+E+AL+ + + +L D A Y +L
Sbjct: 50 YEEALEDYEK-----------------------------------ALELDPDNAKAYYNL 74
Query: 159 AQTYKDNKQYNLAVDYFNKELRLH 182
Y +Y A++ + K L L
Sbjct: 75 GLAYYKLGKYEEALEAYEKALELD 98
Score = 36.2 bits (84), Expect = 0.005
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 146 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 205
+L D A Y +LA Y +Y A++ + K L L P+ K +G Y K
Sbjct: 28 ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL----DPDNAKAYYNLGLAYYKLGK 83
Query: 206 PFELVVSTHEKALDL 220
+E + +EKAL+L
Sbjct: 84 -YEEALEAYEKALEL 97
Score = 36.2 bits (84), Expect = 0.005
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
+L D A Y +LA Y +Y A++ + K L L P+ K +G Y K
Sbjct: 28 ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL----DPDNAKAYYNLGLAYYKLGK 83
Query: 91 SFEIVQSTHEKALDL 105
+E +EKAL+L
Sbjct: 84 -YEEALEAYEKALEL 97
Score = 28.5 bits (64), Expect = 2.6
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH 67
+L D A Y +L Y +Y A++ + K L L
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 38.1 bits (89), Expect = 0.010
Identities = 32/89 (35%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKV------------QDSA--GWLPLHEAANHG 429
G TALH+AA R N +V+ LL++G V DS G PL+ AA G
Sbjct: 127 PGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLG 186
Query: 430 HTDIVQALVSAGADPNDKVQDSAGWLPLH 458
IV L AD DS G LH
Sbjct: 187 SPSIVALLSEDPADIL--TADSLGNTLLH 213
Score = 32.4 bits (74), Expect = 0.58
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 18/111 (16%)
Query: 383 PRGETALHVAAARG-NLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS-- 439
G +AL VAA NL L + LL V D+ LH + D V+A++
Sbjct: 50 RLGRSALFVAAIENENLELTELLLNLSCRGAVGDTL----LHAISLEYV-DAVEAILLHL 104
Query: 440 ----AGADPNDKVQD------SAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
+ P + D + G LH AA+ + +IV+ L+ GA V
Sbjct: 105 LAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP 155
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 37.7 bits (87), Expect = 0.013
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 398 LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPL 457
L + + LL+ G V +D P+H AA G+ +V L+S GAD N D L
Sbjct: 158 LLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALD--DLSVL 215
Query: 458 HEAANHGHTDIVQALV 473
A + + D ++A++
Sbjct: 216 ECAVDSKNIDTIKAII 231
Score = 32.0 bits (72), Expect = 0.81
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 433 IVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
I + L+ GAD N K D P+H AA G+ +V L+S GA+V+
Sbjct: 160 IAEMLLEGGADVNAK--DIYCITPIHYAAERGNAKMVNLLLSYGADVN 205
Score = 29.3 bits (65), Expect = 6.0
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN 445
T +H AA RGN +V LL G V + L A + + D ++A++ ++ N
Sbjct: 180 TPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNIN 238
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 37.0 bits (86), Expect = 0.025
Identities = 50/247 (20%), Positives = 84/247 (34%), Gaps = 37/247 (14%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFE 93
D AS + L Y A + F K L + FP A L I ++QE + +
Sbjct: 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP-AAANLARI----DIQEGNPD 516
Query: 94 IVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLAS 153
EK L + +N + ++ LY + N + A + L +
Sbjct: 517 DAIQRFEKVLTIDPKNLR------AILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIE 568
Query: 154 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVST 213
++LAQ Y Q A+ N+ + PEA LG +L VS+
Sbjct: 569 PALALAQYYLGKGQLKKALAILNEAADAAPDS-PEAWLMLGRA----QLAAGDLNKAVSS 623
Query: 214 HEKALDL---------------ARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK 258
+K L L A K I ++ R++ + TE + +L
Sbjct: 624 FKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL----ELKPDNTEAQIGLAQLL 679
Query: 259 SLEEKLD 265
++ +
Sbjct: 680 LAAKRTE 686
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 36.2 bits (83), Expect = 0.027
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G +AL+ A A N+ LV +LL G + ++ PLH+AA T IV+ L+ +G D
Sbjct: 30 GHSALYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQAATLEDTKIVKILLFSGMD- 86
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALV 473
D D G L+ A + G+ V+ V
Sbjct: 87 -DSQFDDKGNTALYYAVDSGNMQTVKLFV 114
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat.
Length = 69
Score = 32.7 bits (75), Expect = 0.051
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFEL 209
D A +L Y+ A++ + K L L P+ + + Y K +E
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELD----PDNAEAYYNLALAYLKLGKDYEE 56
Query: 210 VVSTHEKALDLA 221
+ EKAL+L
Sbjct: 57 ALEDLEKALELD 68
Score = 31.1 bits (71), Expect = 0.16
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
D A +L Y+ A++ + K L L P+ + + Y K +E
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELD----PDNAEAYYNLALAYLKLGKDYEE 56
Query: 95 VQSTHEKALDLA 106
EKAL+L
Sbjct: 57 ALEDLEKALELD 68
>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat.
Length = 34
Score = 30.5 bits (70), Expect = 0.12
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRL 66
A Y L Q Y Y A +Y+ K L L
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALEL 30
Score = 30.5 bits (70), Expect = 0.12
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRL 181
A Y L Q Y Y A +Y+ K L L
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALEL 30
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 34.1 bits (79), Expect = 0.17
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 180 RLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKK 239
+L R + L EL E+ +L+ E+ A +N+ K I ++ +
Sbjct: 17 KLKKRGGDALD-----VDKLLELDEERRKLLR-ELEELQ--AERNELSKEIGRALKRGED 68
Query: 240 LYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDD 286
++ E++++K +LK LE LD E DT+L PNI +
Sbjct: 69 DAEE--LIAEVKELKEKLKELEAALDEL--EAELDTLLLTIPNIPHE 111
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 33.9 bits (77), Expect = 0.20
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 400 LVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN 445
V+ LL +G+ D G PLH A+ + IV L++ GADPN
Sbjct: 54 FVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPN 99
>gnl|CDD|224705 COG1792, MreC, Cell shape-determining protein [Cell envelope
biogenesis, outer membrane].
Length = 284
Score = 33.1 bits (76), Expect = 0.26
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 199 LYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK 258
+ + PFE V E L +++ ++ K+L + E+E ++ E K
Sbjct: 47 VQSVVAAPFEFVDGVLEFLKSLKDLALENEELK------KELAELEQLLEEVESLEEENK 100
Query: 259 SLEEKLDLNSSSDEEDTIL 277
L+E LD SS + D I
Sbjct: 101 RLKELLDFKESSSDYDPIA 119
>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats. Repeats present in 4
or more copies in proteins. Contain a minimum of 34
amino acids each and self-associate via a "knobs and
holes" mechanism.
Length = 34
Score = 29.0 bits (66), Expect = 0.40
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNK 62
A +L Y Y+ A++Y+ K
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEK 26
Score = 29.0 bits (66), Expect = 0.40
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNK 177
A +L Y Y+ A++Y+ K
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEK 26
>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat.
Length = 34
Score = 28.5 bits (65), Expect = 0.56
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRL 66
A +L Y +Y+ A++Y+ K L L
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALEL 30
Score = 28.5 bits (65), Expect = 0.56
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRL 181
A +L Y +Y+ A++Y+ K L L
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALEL 30
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 32.0 bits (73), Expect = 0.90
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 223 QNKDDKLIRTVMRSMKKLYKKHDKFTELE-QIKTELKSLEEKLDLNSSSDEEDTILEDSP 281
N +K + +++ +KK +D E E + LE+ ++S S++ + I
Sbjct: 468 NNSQEKAVLKLLQKIKK---NNDFIKEFETDALKLQEILEK---VDSKSEKLEKISAKID 521
Query: 282 NIGDDINLEELSDLNSA 298
NI + + ++S L
Sbjct: 522 NIKELFDESKMSILQEI 538
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 31.7 bits (72), Expect = 0.95
Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 4/119 (3%)
Query: 214 HEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL-KSLEEKLDL---NSS 269
D+ +++ + + K + ++ E+ E K ++L +
Sbjct: 247 ESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDED 306
Query: 270 SDEEDTILEDSPNIGDDINLEELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKD 328
DEE I+ +SP ++ E L +EE +E +R R + K+ KD
Sbjct: 307 EDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRRGRRRVMKKKTFKD 365
>gnl|CDD|218508 pfam05222, AlaDh_PNT_N, Alanine dehydrogenase/PNT, N-terminal
domain. This family now also contains the lysine
2-oxoglutarate reductases.
Length = 135
Score = 30.4 bits (70), Expect = 0.95
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 13/52 (25%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSA 452
V+ L+K GH V V+ AG A G +D +A +AGA ++ D+A
Sbjct: 20 VKKLVKLGHEVLVESGAG-----LGA--GFSD--EAYEAAGA----EIVDTA 58
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 31.4 bits (71), Expect = 1.3
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Query: 397 NLTLVQSLLKQGHPVKVQDSAGWLPLHE--AANHGHTDIVQALVSAGADPNDKVQDSAGW 454
++++V S L+ G + +DSAG LH+ ++ TDI++ L G D N+ D+ G
Sbjct: 296 DISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEP--DNIGN 353
Query: 455 LPLH--------------EAANHGHTDIVQALVSAGAEVS 480
LH E N D++Q L+S GA+++
Sbjct: 354 TVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADIT 393
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 30.8 bits (70), Expect = 1.9
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 242 KKHDKFTELEQIKTELKSLEEKL-DLNSSSDEEDTILED----SPNIGDDINLEELSDLN 296
K K ++E+IK ELK L+E+L +L+++ + L+D PNI + S
Sbjct: 63 AKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHE------SVPV 116
Query: 297 SADEESKEDQDK 308
DEE + +
Sbjct: 117 GKDEEDNLEVKR 128
>gnl|CDD|214967 smart01003, AlaDh_PNT_N, Alanine dehydrogenase/PNT, N-terminal
domain. Alanine dehydrogenase catalyzes the
NAD-dependent reversible reductive amination of pyruvate
into alanine.
Length = 133
Score = 29.3 bits (67), Expect = 1.9
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 13/52 (25%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSA 452
V+ L+K GH V V+ AG E A G +D +A +AGA ++ D+A
Sbjct: 20 VKKLVKLGHEVLVESGAG-----EGA--GFSD--EAYEAAGA----EIVDTA 58
>gnl|CDD|212579 cd11706, DHR2_DOCK2, Dock Homology Region 2, a GEF domain, of Class
A Dedicator of Cytokinesis 2. Dock2 is a hematopoietic
cell-specific, class A DOCK and is an atypical guanine
nucleotide exchange factor (GEF) that lacks the
conventional Dbl homology (DH) domain. As a GEF, it
activates small GTPases by exchanging bound GDP for free
GTP. It plays an important role in lymphocyte migration
and activation, T-cell differentiation, neutrophil
chemotaxis, and type I interferon induction. DOCK
proteins are divided into four classes (A-D) based on
sequence similarity and domain architecture; class A
includes Dock1, 2 and 5. All DOCKs contain two homology
domains: the DHR-1 (Dock homology region-1), also called
CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and
DHR-2 (also called CZH2 or Docker). The DHR-1 domain
binds phosphatidylinositol-3,4,5-triphosphate. This
alignment model represents the DHR-2 domain of Dock2,
which contains the catalytic GEF activity for Rac and/or
Cdc42. Class A DOCKs, like Dock2, are specific GEFs for
Rac and they contain an SH3 domain at the N-terminal
region and a PxxP motif at the C-terminus.
Length = 421
Score = 30.3 bits (68), Expect = 2.1
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 38 SCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQ-EKSFEI 94
SC ++L YKD + + + Y K +L L N+ EA TL L + E+
Sbjct: 3 SCTVNLLNFYKDINREAMYIRYLYKLRDLHLDCENYTEAAYTLLLHTRLLKWSDEQCASQ 62
Query: 95 VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC 154
V T ++ RQ K+ T+ +I + K + A S LCK+LA
Sbjct: 63 VMQTGQQHPQTQRQLKE-----TLYETIIGYFDKGKMWEEAIS---------LCKELAEQ 108
Query: 155 Y 155
Y
Sbjct: 109 Y 109
>gnl|CDD|204405 pfam10146, zf-C4H2, Zinc finger-containing protein. This is a
family of proteins which appears to have a highly
conserved zinc finger domain at the C terminal end,
described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is
predicted to contain a coiled coil. Members are
annotated as being tumour-associated antigen HCA127 in
humans but this could not confirmed.
Length = 215
Score = 29.8 bits (67), Expect = 2.1
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 244 HDKFTELEQIKTELKSLEEKLD-----LNSSSDEEDTILEDSPNIGDDINLEELSDLNSA 298
+K ELE++K E+K+ EE L+ L E + +LE+ +++ +D+N
Sbjct: 7 RNKTDELEKLKDEIKAEEEALESEEKHLKEYDKEMEELLEEKMQHVEELRQIH-ADINDM 65
Query: 299 DEESKEDQDKRTNRKR-APRSHFLIKRNDK--DSNLNLYNIES 338
+ E K+ + + R R H + + L
Sbjct: 66 ETEIKQSKSELERRMGKIARMHGEYNPLKESINEMRKLELGLE 108
>gnl|CDD|164909 PHA02334, PHA02334, hypothetical protein.
Length = 64
Score = 27.5 bits (61), Expect = 2.9
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 195 EIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMK 238
+I D EL EK E+ + KA+ L + + DD+L+ V ++++
Sbjct: 19 KIPDDEELGEKLIEICLLILGKAVKLTKTDMDDELLEVVKKAIR 62
Score = 27.1 bits (60), Expect = 3.7
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 80 EIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIK 123
+I D EL EK EI KA+ L + + DD+L+ V ++I+
Sbjct: 19 KIPDDEELGEKLIEICLLILGKAVKLTKTDMDDELLEVVKKAIR 62
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 30.1 bits (68), Expect = 3.2
Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 17/198 (8%)
Query: 203 QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE 262
E E+ L + ++ + + + ELE++K E++SLEE
Sbjct: 352 LLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE 411
Query: 263 KLDLNSSSDEE-----DTILEDSPNIGDDI--NLEELSDLNSADEESKEDQDKRTNRKRA 315
+L+ S E+ + + + ++ EEL +L EE ++ +
Sbjct: 412 RLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAE 471
Query: 316 PRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETP 375
+ + + L+ + + +Q VR +L L + L A L
Sbjct: 472 LQE----ELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKV 527
Query: 376 TTSLLEKPRGETALHVAA 393
K + ETAL A
Sbjct: 528 ------KEKYETALEAAL 539
Score = 29.7 bits (67), Expect = 4.6
Identities = 32/164 (19%), Positives = 68/164 (41%), Gaps = 9/164 (5%)
Query: 191 KTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDD--KLIRTVMRSMKKLYKKHDKFT 248
K L E E Q + E + + + L ++ + + + R +++L ++
Sbjct: 670 KELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALE 729
Query: 249 -ELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDDIN--LEELSDLNSADEESKED 305
ELEQ+++ L+ LEE+L+ EE + E + +++ E L+ L EE +E
Sbjct: 730 EELEQLQSRLEELEEELEELEEELEE--LQERLEELEEELESLEEALAKLKEEIEELEEK 787
Query: 306 QDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQ 349
+ ++ ++ + +ES+ R RL +
Sbjct: 788 RQALQEELEELEE--ELEEAERRLDALERELESLEQRRERLEQE 829
>gnl|CDD|206350 pfam14182, YgaB, YgaB-like protein. The YgaB-like protein family
includes the B. subtilis YgaB protein, which is
functionally uncharacterized. This family of proteins is
found in bacteria. Proteins in this family are
approximately 90 amino acids in length.
Length = 79
Score = 27.7 bits (62), Expect = 3.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 227 DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDE 272
DKL+ M++M KL + ++I+ EL LE+K +L S E
Sbjct: 3 DKLVSEQMKTMDKLLFLQSELERCQEIEKELLELEKKAELESIQQE 48
>gnl|CDD|215020 smart01091, CorC_HlyC, Transporter associated domain. This small
domain is found in a family of proteins with the DUF21
domain and two CBS domains with this domain found at the
C-terminus of the proteins, the domain is also found at
the C terminus of some Na+/H+ antiporters. This domain
is also found in CorC that is involved in Magnesium and
cobalt efflux. The function of this domain is uncertain
but might be involved in modulating transport of ion
substrates.
Length = 78
Score = 27.4 bits (62), Expect = 4.5
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 254 KTELKSLEEKLDLNSSSDEEDTI-------LEDSPNIGDDINLEEL 292
+T + L E L L+ +E DT+ L P +GD + + L
Sbjct: 13 RTPIDDLNELLGLDLPEEEYDTLGGLVLEELGRIPEVGDSVEIGGL 58
>gnl|CDD|236118 PRK07860, PRK07860, NADH dehydrogenase subunit G; Validated.
Length = 797
Score = 29.5 bits (67), Expect = 5.3
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 19/69 (27%)
Query: 388 ALHVAAARGNLTLVQSLLKQGHPVKVQDSAG---WLPLHEAANHGHTDIVQALVSAGADP 444
A+ V+ RG++TL P+ + D WLPL+ + + GA
Sbjct: 737 AVTVSTERGSITL---------PLAITDMPDRVVWLPLNSPGSTVRRTL-------GATA 780
Query: 445 NDKVQDSAG 453
V+ +AG
Sbjct: 781 GAVVRIAAG 789
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 29.2 bits (66), Expect = 5.5
Identities = 11/67 (16%), Positives = 31/67 (46%)
Query: 249 ELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDDINLEELSDLNSADEESKEDQDK 308
E + E ++++ + + D E+ + + ++ +E SD +EE +E+++K
Sbjct: 319 GEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Query: 309 RTNRKRA 315
+ +
Sbjct: 379 KKKKSAE 385
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 28.6 bits (64), Expect = 5.6
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 240 LYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDTILEDS---PNIGDDINLEELSDLN 296
+ +K D + +++ + E++LD + +EE+ DS N +D + +E+ ++
Sbjct: 94 MTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEIL 153
Query: 297 SADEESKEDQD 307
D+E ED+D
Sbjct: 154 IEDDEVDEDED 164
>gnl|CDD|235734 PRK06193, PRK06193, hypothetical protein; Provisional.
Length = 206
Score = 28.1 bits (63), Expect = 7.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 324 RNDKDSNLNLYNIESITISRNRLGAQEVRKLLS 356
R++K+ LN N E + RN L +R LL+
Sbjct: 117 RHEKEIRLNFLNSEPVPAERNALLKAGLRPLLT 149
>gnl|CDD|219083 pfam06548, Kinesin-related, Kinesin-related. This family
represents a region within kinesin-related proteins from
higher plants. Many family members also contain the
pfam00225 domain. Kinesins are ATP-driven microtubule
motor proteins that produce directed force. Some family
members are associated with the phragmoplast, a
structure composed mainly of microtubules that executes
cytokinesis in higher plants.
Length = 488
Score = 28.7 bits (64), Expect = 7.5
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 61 NKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR 120
NK L++ R+ EAV+ GE+ L L+E + E E+A+ ++N+ K +
Sbjct: 412 NKSLQIQLRDTAEAVQAAGEL--LVRLRE-AEEAATLAQERAMLAEQENEKLK------K 462
Query: 121 SIKKLYKKHDN 131
I+KL +KH
Sbjct: 463 QIEKLKRKHKM 473
Score = 28.7 bits (64), Expect = 8.8
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 176 NKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMR 235
NK L++ R+ EAV+ GE+ L L+E E E+A+ ++N+ K +
Sbjct: 412 NKSLQIQLRDTAEAVQAAGEL--LVRLREAE-EAATLAQERAMLAEQENEKLK------K 462
Query: 236 SMKKLYKKHDKFTELEQIKTELK 258
++KL +KH E+ +K L
Sbjct: 463 QIEKLKRKHK--MEIVTMKQYLA 483
>gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial.
This model represents cystathionine beta-lyase
(alternate name: beta-cystathionase), one of several
pyridoxal-dependent enzymes of cysteine, methionine, and
homocysteine metabolism. This enzyme is involved in the
biosynthesis of Met from Cys [Amino acid biosynthesis,
Aspartate family].
Length = 377
Score = 28.7 bits (64), Expect = 7.5
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 372 LETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANH--G 429
LE P++ E A G + ++ + G K + + + + G
Sbjct: 141 LEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPLEHGVDISIQAGTKYLVG 200
Query: 430 HTDIVQALVSAGADPNDKVQDSA---GW 454
H+DI+ V A A D++++ + G
Sbjct: 201 HSDIMIGTVVANARTWDQLREHSYLMGQ 228
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model
describes peptide chain release factor 1 (PrfA, RF-1),
and excludes the related peptide chain release factor 2
(PrfB, RF-2). RF-1 helps recognize and terminate
translation at UAA and UAG stop codons. The
mitochondrial release factors are prfA-like, although
not included above the trusted cutoff for this model.
RF-1 does not have a translational frameshift [Protein
synthesis, Translation factors].
Length = 360
Score = 28.5 bits (64), Expect = 8.5
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 200 YELQEKPFELVVSTHEKALDLARQNKDDK-LIRTVMRSMKKLYKKHDKFTELEQIKTELK 258
+ E +V + + K+ K ++ M+++ K+ ELE+++ +++
Sbjct: 38 LSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEESDPEMREMAKE-----ELEELEEKIE 92
Query: 259 SLEEKLDL----NSSSDEEDTILEDSPNIGDD 286
LEE+L + +DE++ ILE G D
Sbjct: 93 ELEEQLKVLLLPKDPNDEKNVILEIRAGTGGD 124
>gnl|CDD|110537 pfam01540, Lipoprotein_7, Adhesin lipoprotein. This family
consists of the p50 and variable adherence-associated
antigen (Vaa) adhesins from Mycoplasma hominis. M.
hominis is a mycoplasma associated with human urogenital
diseases, pneumonia, and septic arthritis. An adhesin is
a cell surface molecule that mediates adhesion to other
cells or to the surrounding surface or substrate. The
Vaa antigen is a 50-kDa surface lipoprotein that has
four tandem repetitive DNA sequences encoding a periodic
peptide structure, and is highly immunogenic in the
human host. p50 is also a 50-kDa lipoprotein, having
three repeats A,B and C, that may be a tetramer of
191-kDa in its native environment.
Length = 353
Score = 28.5 bits (63), Expect = 9.2
Identities = 47/244 (19%), Positives = 103/244 (42%), Gaps = 26/244 (10%)
Query: 42 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEK 101
+LA+ K N Y+ ++ NKE+ ++F EA G GD + K V++ +
Sbjct: 50 ALAEELKKNPDYSKILETLNKEIAEATKSFKEA----GSYGDYPAIISKLSAAVENAKNE 105
Query: 102 ALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTV--LSSDLCKDLASCYISLA 159
+ +N + K+L +++ + S EL + + +L K + +
Sbjct: 106 KKAIDDKNA---------QIAKELAERNAKIQSNIEELKKINNEAFELSKTVNKTIAEVE 156
Query: 160 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVK--------TLGEIGDLYELQEKPFELVV 211
+ +K K + ++ F +L +R E TL E+ E+ F +
Sbjct: 157 KKFKIPKDFKEQLENFADDLLDKSRQIDEFTTVTSTQEGFTLAELESFKEITTTWFNGMK 216
Query: 212 STHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELE-QIKTELKSLEEKLDLNSSS 270
S + LD + + I ++++ +++L K + +E +K + LE+K ++ +
Sbjct: 217 SEWARVLDAWKNELTE--INSIIKGVEELKKLSHEISEFSNSVKKTISELEKKFKIDDKT 274
Query: 271 DEED 274
++E+
Sbjct: 275 NKEE 278
>gnl|CDD|218416 pfam05073, Baculo_p24, Baculovirus P24 capsid protein. Baculovirus
P24 is associated with nucleocapsids of budded and
polyhedra-derived virions.
Length = 165
Score = 27.7 bits (62), Expect = 9.7
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 247 FTELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDDIN 288
L IKT+L +L+E L+ N + + + ++ N+ DIN
Sbjct: 106 VDPLCDIKTQLCTLQECLNENIVT--SNILRSENNNLLSDIN 145
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.130 0.358
Gapped
Lambda K H
0.267 0.0870 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,282,955
Number of extensions: 2268883
Number of successful extensions: 2791
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2666
Number of HSP's successfully gapped: 247
Length of query: 480
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 379
Effective length of database: 6,457,848
Effective search space: 2447524392
Effective search space used: 2447524392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.0 bits)