RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy875
(480 letters)
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 124 bits (315), Expect = 2e-34
Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
RGET LH+A+ +G++ V+ LL+ G V+D AGW PLHEA NHGH +V+ L+ A
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N PLH+AA +GH DIV+ L+S GA
Sbjct: 69 VNTT--GYQNDSPLHDAAKNGHVDIVKLLLSYGASR 102
Score = 102 bits (257), Expect = 3e-26
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH A G+L +V+ LL+ V PLH+AA +GH DIV+ L+S GA
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR 102
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
N + G P+ + ++ +
Sbjct: 103 NAV--NIFGLRPVDYTDDESMKSLLLLPEKNES 133
Score = 88.2 bits (220), Expect = 4e-21
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
+ G LH A+ G V+ L+ G+DPN K D AGW PLHEA NHGH +V+ L+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 475 AGAEV 479
A V
Sbjct: 65 HKALV 69
Score = 62.4 bits (153), Expect = 4e-12
Identities = 11/59 (18%), Positives = 23/59 (38%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
++ LH AA G++ +V+ LL G + G P+ + ++ +
Sbjct: 76 NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 47.4 bits (114), Expect = 7e-07
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
G DP + G LH A+ G V+ L+ G++
Sbjct: 1 GIDPF---TNHRGETLLHIASIKGDIPSVEYLLQNGSDP 36
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 114 bits (288), Expect = 1e-30
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+ A G+L V+ + +G V G PLH AA+ G +I++ L+ GAD
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N D PL A GH V+ L+S GA+
Sbjct: 67 N--APDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Score = 97.1 bits (243), Expect = 2e-24
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G LH AA G L +++ LL +G + D PL A GH V+ L+S GAD
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQ 470
K D G N ++Q
Sbjct: 100 TVKGPD--GLTAFEATDNQAIKALLQ 123
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 114 bits (289), Expect = 2e-30
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
++H AA+G + + + ++Q + + D G+ PL AA HG +V+ L+ GAD
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
P + L A + G+TDIV+ L+ G +V
Sbjct: 62 PQ--LLGKGRESALSLACSKGYTDIVKMLLDCGVDV 95
Score = 112 bits (283), Expect = 1e-29
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T L AAA G + +V+ LL+ G ++ L A + G+TDIV+ L+ G D
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 95
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N D G PL A + H V+ L+ +GA+
Sbjct: 96 N--EYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 128
Score = 110 bits (277), Expect = 1e-28
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
E+AL +A ++G +V+ LL G V D G PL A + H V+ L+ +GADP
Sbjct: 69 RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 128
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
++ +G+ + A G+ + Q + S ++
Sbjct: 129 T--IETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161
Score = 75.9 bits (188), Expect = 2e-16
Identities = 13/66 (19%), Positives = 28/66 (42%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T L A ++ V+ LL+ G ++ +G+ + A G+ + Q + S
Sbjct: 102 GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161
Query: 445 NDKVQD 450
+++
Sbjct: 162 LQNIKE 167
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 114 bits (287), Expect = 4e-30
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
RG T L A+A G + V+ LL+ G + L A+ G+TDIV L+ D
Sbjct: 35 RGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVD 94
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N + D G PL A H V+AL++ GA++
Sbjct: 95 IN--IYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128
Score = 112 bits (284), Expect = 2e-29
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
++H AA+G L ++ L++G + V D G+ PL A+ G + V+ L+ GAD
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
P+ + L A+ G+TDIV L+ ++
Sbjct: 62 PH--ILAKERESALSLASTGGYTDIVGLLLERDVDI 95
Score = 112 bits (282), Expect = 3e-29
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
E+AL +A+ G +V LL++ + + D G PL A H V+AL++ GAD
Sbjct: 69 RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ +G+ P+ A G+ + Q + + ++
Sbjct: 129 T--TEADSGYTPMDLAVALGYRKVQQVIENHILKL 161
Score = 75.9 bits (188), Expect = 2e-16
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T L A ++ V++LL +G + + +G+ P+ A G+ + Q + +
Sbjct: 102 GGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL 161
Query: 445 NDKVQDSAGWLP 456
+ P
Sbjct: 162 FQS--NLVPADP 171
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 112 bits (283), Expect = 7e-30
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+ L AAARG + V+ LL+ G + G P+ G + + L+ GA+
Sbjct: 11 SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE 69
Query: 444 PNDKVQDSAGW-LPLHEAANHGHTDIVQALVSAGAEV 479
PN D A P+H+AA G D + L AGA +
Sbjct: 70 PNCA--DPATLTRPVHDAAREGFLDTLVVLHRAGARL 104
Score = 108 bits (273), Expect = 2e-28
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGW-LPLHEAANHGHTDIVQALVSAGAD 443
G + V G+ + + LL G D A P+H+AA G D + L AGA
Sbjct: 45 GRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR 103
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
+ V D+ G LP+ A GH DI + L +A
Sbjct: 104 LD--VCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 87.5 bits (218), Expect = 6e-21
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 408 GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
+ + + L AA G + V+ L+ AGADPN + G P+ G
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL--NRFGRRPIQVMMM-GSAQ 58
Query: 468 IVQALVSAGAEV 479
+ + L+ GAE
Sbjct: 59 VAELLLLHGAEP 70
Score = 70.2 bits (173), Expect = 7e-15
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+H AA G L + L + G + V D+ G LP+ A GH DI + L +A D
Sbjct: 80 RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 110 bits (278), Expect = 1e-29
Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LL+ G V +D G PLH AA +GH ++V+ L+ AGAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
N K D G PLH AA +GH ++V+ L+ AGA
Sbjct: 62 NAK--DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 84.7 bits (211), Expect = 2e-20
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 418 GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
G PLH AA +GH ++V+ L+ AGAD N K D G PLH AA +GH ++V+ L+ AGA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 478 EV 479
+V
Sbjct: 60 DV 61
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 112 bits (282), Expect = 2e-29
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGW-LPLHEAANHGHTDIVQALVSAGAD 443
G + V G+ + + LL G D A P+H+AA G D + L AGA
Sbjct: 45 GRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR 103
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ V+D+ G LP+ A GH D+ + L +A
Sbjct: 104 LD--VRDAWGRLPVDLAEELGHRDVARYLRAAAGGT 137
Score = 111 bits (279), Expect = 4e-29
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
L AAARG + V++LL+ G +S G P+ G + + L+ GA+P
Sbjct: 12 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEP 70
Query: 445 NDKVQDSAGW-LPLHEAANHGHTDIVQALVSAGAEV 479
N D A P+H+AA G D + L AGA +
Sbjct: 71 N--CADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104
Score = 89.1 bits (222), Expect = 3e-21
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
+H AA G L + L + G + V+D+ G LP+ A GH D+ + L +A
Sbjct: 80 RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR- 138
Query: 447 KVQDSAGWLPLHEAANHGHTDIV 469
G A G +DI
Sbjct: 139 ------GSNHARIDAAEGPSDIP 155
Score = 81.4 bits (202), Expect = 1e-18
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 409 HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDI 468
L AA G + V+AL+ AGA+PN +S G P+ G +
Sbjct: 3 PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAP--NSYGRRPIQVMMM-GSARV 59
Query: 469 VQALVSAGAEV 479
+ L+ GAE
Sbjct: 60 AELLLLHGAEP 70
Score = 48.2 bits (116), Expect = 5e-07
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIV 434
G + +A G+ + + L + + A G +DI
Sbjct: 111 GRLPVDLAEELGHRDVARYLRAAAGGTRGSN-----HARIDAAEGPSDIP 155
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 109 bits (275), Expect = 7e-29
Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LL+ G V +D G PLH AA +GH ++V+ L+ AGAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N K D G PLH AA +GH ++V+ L+ AGA+V
Sbjct: 62 NAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADV 94
Score = 108 bits (272), Expect = 2e-28
Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LL+ G V +D G PLH AA +GH ++V+ L+ AGAD
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
N K D G PLH AA +GH ++V+ L+ AGA
Sbjct: 95 NAK--DKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 107 bits (270), Expect = 3e-28
Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH AA G+ V+ LL +G V + G PLH AA +GH +IV+ L++ GAD
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N + G P H A +GH +IV+ L + GA+V
Sbjct: 69 NAR--SKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 82.4 bits (205), Expect = 3e-19
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQA 471
G PLH AA +GH + V+ L+S GAD N + G PLH AA +GH +IV+
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR--SKDGNTPLHLAAKNGHAEIVKL 60
Query: 472 LVSAGAEV 479
L++ GA+V
Sbjct: 61 LLAKGADV 68
Score = 81.3 bits (202), Expect = 7e-19
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+ +V+ LL +G V + G P H A +GH +IV+ L + GAD
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Query: 445 NDKVQDSAGWLPLH 458
N + H
Sbjct: 102 NAR--SWGSSHHHH 113
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 108 bits (273), Expect = 3e-28
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 384 RGETALHVAAARGNLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
R L AAARG++ V+ LL ++ + G L G T I L+ GA
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGA 59
Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
PN + D++G P+H+AA G D ++ LV GA+V
Sbjct: 60 SPNVQ--DTSGTSPVHDAARTGFLDTLKVLVEHGADV 94
Score = 102 bits (258), Expect = 4e-26
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G+TAL G+ + LLKQG VQD++G P+H+AA G D ++ LV GAD
Sbjct: 36 GKTALQ-VMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N D G LP+H A GHT +V L + +++
Sbjct: 95 NVP--DGTGALPIHLAVQEGHTAVVSFLAA-ESDL 126
Score = 96.7 bits (242), Expect = 7e-24
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G + +H AA G L ++ L++ G V V D G LP+H A GHT +V L + +D
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDL 126
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
+ + D+ G PL A G D+V L
Sbjct: 127 HRR--DARGLTPLELALQRGAQDLVDILQG 154
Score = 31.2 bits (72), Expect = 0.31
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 385 GETALHVAAARGNLTLVQSLLKQ 407
G T L +A RG LV L
Sbjct: 133 GLTPLELALQRGAQDLVDILQGH 155
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 110 bits (277), Expect = 4e-28
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS-AGAD 443
+ LH AA RGNL+ ++ L V D AG L+ A + GH DIV+ L + +
Sbjct: 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE 132
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N Q+ G LH AA G+ DIVQ L++ GA
Sbjct: 133 LN--QQNKLGDTALHAAAWKGYADIVQLLLAKGART 166
Score = 105 bits (264), Expect = 3e-26
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQ-GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
G TAL+ A G+ +V+ L Q + Q+ G LH AA G+ DIVQ L++ GA
Sbjct: 106 GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR 165
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ +++ L A N +++ A
Sbjct: 166 TD--LRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199
Score = 95.4 bits (238), Expect = 1e-22
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+T ++G L+ S V Q + PLHEAA G+ ++ +
Sbjct: 44 MSDTNWWKGTSKGRTGLIPSNY-----VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG 98
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVS-AGAEV 479
N D AG L+ A + GH DIV+ L + E+
Sbjct: 99 VNGL--DKAGSTALYWACHGGHKDIVEMLFTQPNIEL 133
Score = 87.7 bits (218), Expect = 5e-20
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G+TALH AA +G +VQ LL +G +++ L A N +++ A
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199
Query: 445 NDKVQDSAGWLPLHEAANHGH 465
++ +L ++ H
Sbjct: 200 TLS--NAEDYLDDEDSDLEHH 218
Score = 83.8 bits (208), Expect = 1e-18
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 7/96 (7%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
G+ + A L + + + + G T ++ +
Sbjct: 11 PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN------ 64
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
Q + PLHEAA G+ ++ + V
Sbjct: 65 -YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV 99
Score = 61.1 bits (149), Expect = 6e-11
Identities = 7/63 (11%), Positives = 14/63 (22%), Gaps = 2/63 (3%)
Query: 410 PVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIV 469
P G + + A L D + + G T ++
Sbjct: 4 PPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYI--TDMSDTNWWKGTSKGRTGLI 61
Query: 470 QAL 472
+
Sbjct: 62 PSN 64
Score = 35.3 bits (82), Expect = 0.024
Identities = 3/31 (9%), Positives = 7/31 (22%)
Query: 449 QDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
G + + A L ++
Sbjct: 8 PVKPGQVKVFRALYTFEPRTPDELYIEEGDI 38
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 108 bits (273), Expect = 6e-28
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G + LH A G +V+ L+ +G + V + PLH AA+HGH DIVQ L+ AD
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N + G +PLH A G + + LV+ GA V
Sbjct: 99 NAV--NEHGNVPLHYACFWGQDQVAEDLVANGALV 131
Score = 105 bits (265), Expect = 6e-27
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+ GN V+ L + + D G+ PLH A G + +V+ L+ GA
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N + PLH AA+HGH DIVQ L+ A++
Sbjct: 65 INVM--NRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Score = 104 bits (262), Expect = 2e-26
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+T LH+AA+ G+ +VQ LL+ + + G +PLH A G + + LV+ GA
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + G +P+ +A + + G +
Sbjct: 132 SIC--NKYGEMPVDKAKAPLRELLRERAEKMGQNL 164
Score = 80.2 bits (199), Expect = 9e-18
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G LH A G + + L+ G V + + G +P+ +A + + G +
Sbjct: 105 GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL 164
Query: 445 NDKVQDSAGWLPLHEAANHGHT 466
N P + G T
Sbjct: 165 NRI--------PYKDTFWKGTT 178
Score = 73.2 bits (181), Expect = 2e-15
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 415 DSAGWLPLHEAANHGHTDIVQALVSAGA-DPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
+ G+ V+ + D N D G+ PLH A G + +V+ L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG--DDHGFSPLHWACREGRSAVVEMLI 59
Query: 474 SAGAEV 479
GA +
Sbjct: 60 MRGARI 65
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 110 bits (279), Expect = 6e-28
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+ +H AA G+ +++L+ QG V + + PLHEA GH V+ L+ GA
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N + PL A G D V L+ GA V
Sbjct: 63 NGV--TADWHTPLFNACVSGSWDCVNLLLQHGASV 95
Score = 105 bits (264), Expect = 7e-26
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+ LH A G+L+ V+ LLK G V + PL A G D V L+ GA
Sbjct: 36 HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 95
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+S P+HEAA GH + V +L++ G +
Sbjct: 96 Q---PESDLASPIHEAARRGHVECVNSLIAYGGNI 127
Score = 104 bits (262), Expect = 1e-25
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+ +H AA RG++ V SL+ G + + S PL+ A + V+ L+ +GAD
Sbjct: 101 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N Q PLH A ++ L+ GA+
Sbjct: 161 N---QGKGQDSPLHAVARTASEELACLLMDFGADT 192
Score = 102 bits (257), Expect = 6e-25
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
T L A G+ V LL+ G V+ +S P+HEAA GH + V +L++ G +
Sbjct: 69 WHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNI 127
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ K S PL+ A + V+ L+ +GA+V
Sbjct: 128 DHK--ISHLGTPLYLACENQQRACVKKLLESGADV 160
Score = 98.3 bits (246), Expect = 2e-23
Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
++ LH A + L L+ G + +++ G P+ + Q + P
Sbjct: 166 QDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFLEREGPP 223
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
+ + H I + ++ +
Sbjct: 224 S--LMQLCRLRIRKCFGIQQHHKITKLVLPEDLK 255
Score = 93.7 bits (234), Expect = 8e-22
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
T L++A V+ LL+ G V Q PLH A ++ L+ GAD
Sbjct: 134 LGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADT 192
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
K ++ G P+ + Q + S
Sbjct: 193 QAK--NAEGKRPVELVPPESP--LAQLFLEREGPPS 224
Score = 84.4 bits (210), Expect = 1e-18
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 417 AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG 476
+ W P+HEAA HGH ++ L+S G N + PLHEA GH V+ L+ G
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKHG 59
Query: 477 AEV 479
A+V
Sbjct: 60 AQV 62
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 110 bits (277), Expect = 7e-28
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
P L ++ G LVQ ++ + + + G LH A GHT+IV+ LV
Sbjct: 33 FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
G + N DS GW PLH AA+ + + + LV +GA V
Sbjct: 93 GVNVNAA--DSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 106 bits (268), Expect = 1e-26
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G TALH A G+ +V+ L++ G V DS GW PLH AA+ + + + LV +GA
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 445 NDK-VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
D E G+T Q L ++
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 165
Score = 105 bits (263), Expect = 5e-26
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G+ +L + G VK + L +++ G D+VQ ++ DP
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP 63
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + G LH A GHT+IV+ LV G V
Sbjct: 64 SLP--NDEGITALHNAVCAGHTEIVKFLVQFGVNV 96
Score = 80.0 bits (198), Expect = 3e-17
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 8/99 (8%)
Query: 385 GETALHVAAARGNLTLVQSLLKQG---HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG 441
G T LH AA+ N+ + + L++ G + D E G+T Q L
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162
Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
+ L + ++ + G ++
Sbjct: 163 EKMGIM--NKGVIYALWDYEPQNDDEL---PMKEGDCMT 196
Score = 75.0 bits (185), Expect = 1e-15
Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
+ G + L ++ G + L +++ G D+VQ ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIY 58
Query: 475 AGAEV 479
+
Sbjct: 59 EVDDP 63
Score = 49.9 bits (120), Expect = 4e-07
Identities = 6/82 (7%), Positives = 18/82 (21%), Gaps = 3/82 (3%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+ G Q L + + + L + ++ + G
Sbjct: 138 QTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDC 194
Query: 444 PNDKVQDSAGWLPLHEAANHGH 465
++ + A +
Sbjct: 195 MTIIHREDEDEIEWWWARLNDK 216
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 109 bits (275), Expect = 4e-27
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+ +H AA G+ +++L+ QG V + + PLHEA GH V+ L+ GA
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 118
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N + PL A G D V L+ GA V
Sbjct: 119 NGV--TADWHTPLFNACVSGSWDCVNLLLQHGASV 151
Score = 105 bits (265), Expect = 9e-26
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+ +H AA RG++ V SL+ G + + S PL+ A + V+ L+ +GAD
Sbjct: 157 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 216
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N Q PLH ++ L+ GA+
Sbjct: 217 N---QGKGQDSPLHAVVRTASEELACLLMDFGADT 248
Score = 104 bits (261), Expect = 3e-25
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+ LH A G+L+ V+ LLK G V + PL A G D V L+ GA
Sbjct: 92 HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+S P+HEAA GH + V +L++ G +
Sbjct: 152 Q---PESDLASPIHEAARRGHVECVNSLIAYGGNI 183
Score = 101 bits (255), Expect = 2e-24
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
T L A G+ V LL+ G V+ + P+HEAA GH + V +L++ G +
Sbjct: 125 WHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNI 183
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ K S PL+ A + V+ L+ +GA+V
Sbjct: 184 DHK--ISHLGTPLYLACENQQRACVKKLLESGADV 216
Score = 94.1 bits (235), Expect = 8e-22
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G G L +P+ + W P+HEAA HGH ++ L+S G
Sbjct: 33 GSKPAGPRDFPGIRLLS-------NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV 85
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N + PLHEA GH V+ L+ GA+V
Sbjct: 86 NII--TADHVSPLHEACLGGHLSCVKILLKHGAQV 118
Score = 91.4 bits (228), Expect = 7e-21
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
T L++A V+ LL+ G V Q PLH ++ L+ GAD
Sbjct: 189 HLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGAD 247
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
K ++ G P+ + L GA +
Sbjct: 248 TQAK--NAEGKRPVELVPPESPLAQL-FLEREGASL 280
Score = 70.2 bits (173), Expect = 1e-13
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 391 VAAARGNLTLVQSLLKQGHPVKVQDSA-----GWLPLHEAANHGHTDIVQALVSAGADPN 445
+ ++ + L+ +G + D G P G + L+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS-- 58
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
W P+HEAA HGH ++ L+S G V
Sbjct: 59 -------DWSPMHEAAIHGHQLSLRNLISQGWAV 85
Score = 63.7 bits (156), Expect = 2e-11
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
++ LH + L L+ G + +++ G P+ + L GA
Sbjct: 222 QDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASL 280
Query: 445 N 445
Sbjct: 281 P 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 107 bits (271), Expect = 5e-27
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+ A G + L++ G+ V+ D LH AA + D+V+ +S GA
Sbjct: 9 STWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV 68
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ D PLH A GH +V L+ GA+
Sbjct: 69 DQLGGDL-NSTPLHWATRQGHLSMVVQLMKYGADP 102
Score = 102 bits (256), Expect = 6e-25
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
T LH A +G+L++V L+K G + D G +H AA GHT IV L++ G D
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 444 PNDKVQDSAGWLPLHEAANHGHT-DIVQALVSAGAEV 479
+ D G PL AA H+ D + L++ V
Sbjct: 135 VDMM--DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169
Score = 100 bits (251), Expect = 3e-24
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHT-DIVQALVSAGAD 443
G + +H+AA G+ ++V L+ +G V + D G PL AA H+ D + L++
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N LH A G+T ++ L+ AGA V
Sbjct: 169 VNLG-DKYHKNTALHWAVLAGNTTVISLLLEAGANV 203
Score = 99.8 bits (250), Expect = 4e-24
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 385 GETALHVAAARGN-LTLVQSLLKQGHPVKVQDSA-GWLPLHEAANHGHTDIVQALVSAGA 442
G T L AA R + + + LL V + D LH A G+T ++ L+ AGA
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201
Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + + + G L A + ++ L A
Sbjct: 202 NVDAQ--NIKGESALDLAKQRKNVWMINHLQEARQAK 236
Score = 82.1 bits (204), Expect = 6e-18
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQ 470
+ D + +A +G + + LV AG D D LH AA + D+V+
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQP--DKENVTLLHWAAINNRIDLVK 59
Query: 471 ALVSAGAEV 479
+S GA V
Sbjct: 60 YYISKGAIV 68
Score = 72.1 bits (178), Expect = 1e-14
Identities = 19/66 (28%), Positives = 26/66 (39%)
Query: 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG 441
K TALH A GN T++ LL+ G V Q+ G L A + ++ L A
Sbjct: 174 KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233
Query: 442 ADPNDK 447
Sbjct: 234 QAKGYD 239
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 107 bits (269), Expect = 7e-27
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
L AA G L +VQ +K+ + + G LH A + IV L++AGA+
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N DS GW PLH AA+ T I ALV GA +
Sbjct: 81 NSP--DSHGWTPLHCAASCNDTVICMALVQHGAAI 113
Score = 96.9 bits (242), Expect = 3e-23
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G TALH A N ++V L+ G V DS GW PLH AA+ T I ALV GA
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
Query: 445 NDKVQDSAGWLPLHEAANH--GHTDIVQALVSAGAEV 479
S G + + G+ D L +
Sbjct: 114 FAT-TLSDGATAFEKCDPYREGYADCATYLADVEQSM 149
Score = 74.2 bits (183), Expect = 2e-15
Identities = 14/87 (16%), Positives = 21/87 (24%), Gaps = 5/87 (5%)
Query: 385 GETALHVAAA--RGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
G TA G L + + +S L + + D +
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGESV 179
Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIV 469
+ D AA HG V
Sbjct: 180 TVLRR--DGPEETDWWWAALHGQEGYV 204
Score = 51.9 bits (125), Expect = 9e-08
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 434 VQALVSAGADPNDKVQDSA-GWLPLHEAANHGHTDIVQALVSAGAEV 479
+++++ P + + L +AA G ++VQ V +
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP 47
Score = 45.3 bits (108), Expect = 1e-05
Identities = 15/74 (20%), Positives = 19/74 (25%), Gaps = 2/74 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
AL + + + V +D AA HG V G P
Sbjct: 156 AVYALW-DYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY-FGLFP 213
Query: 445 NDKVQDSAGWLPLH 458
K Q S H
Sbjct: 214 RVKPQRSKVKHHHH 227
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 105 bits (264), Expect = 8e-27
Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
L AA G V+ L+ G V +D++GW PLH AA +GH +IV+ L+ GAD
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N D AG PL AA GH +IV+ L+ GA+V
Sbjct: 74 NAV--DHAGMTPLRLAALFGHLEIVEVLLKNGADV 106
Score = 104 bits (262), Expect = 2e-26
Identities = 45/95 (47%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+L +V+ LLK G V D AG PL AA GH +IV+ L+ GAD
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N D G PLH AA GH +IV+ L+ GA+V
Sbjct: 107 NAN--DMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Score = 96.3 bits (241), Expect = 1e-23
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T L +AA G+L +V+ LLK G V D G PLH AA GH +IV+ L+ GAD
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
N + D G + ++G+ D+ + L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEILQK 167
Score = 77.8 bits (193), Expect = 4e-17
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 405 LKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG 464
++ H S L EAA G D V+ L++ GAD N + D++GW PLH AA +G
Sbjct: 1 MRGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAE--DASGWTPLHLAAFNG 58
Query: 465 HTDIVQALVSAGAEV 479
H +IV+ L+ GA+V
Sbjct: 59 HLEIVEVLLKNGADV 73
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 104 bits (263), Expect = 9e-27
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
L AAARG+L + SLL+ V Q+ G L G+ +I + L+ GA+
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN 62
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
P+ K D G+ +H+AA G D +Q L+ A+V
Sbjct: 63 PDLK--DRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Score = 103 bits (259), Expect = 3e-26
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G TAL GN + + LL +G ++D G+ +H+AA G D +Q L+ AD
Sbjct: 38 GRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
N + D+ G LPLH AA GH +V+ LV A
Sbjct: 97 NIE--DNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 98.6 bits (247), Expect = 1e-24
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA-D 443
G +H AA G L +Q+LL+ V ++D+ G LPLH AA GH +V+ LV A +
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
+ + G A +G ++V + + GA
Sbjct: 130 VGHR--NHKGDTACDLARLYGRNEVVSLMQANGA 161
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 106 bits (267), Expect = 1e-26
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+ LH AA G++ + L++ G + PL EAA + H + V+ L+ AGA
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
+ K D+ G LH AA GH ++VQ L+S G
Sbjct: 71 DPK--DAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101
Score = 105 bits (266), Expect = 2e-26
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T + A ++ LV+ LL +G + ++D+ + LH AA G DI + L++A D
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + G PLH AA D V +S ++V
Sbjct: 171 HAV--NIHGDSPLHIAARENRYDCVVLFLSRDSDV 203
Score = 105 bits (264), Expect = 4e-26
Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHP-VKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
G T LH+AA +G+ +VQ LL G V QD GW P+ A + H D+V+ L+S G+D
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N + D+ + LH AA G DI + L++A ++
Sbjct: 137 INIR--DNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Score = 101 bits (254), Expect = 1e-24
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
LH AA G + + + LL + + G PLH AA D V +S +D
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
K + G PL A+ + + A
Sbjct: 204 TLK--NKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 82.5 bits (205), Expect = 4e-18
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQ 470
K++ PLH AA GH DI LV AGA+ + PL EAA + H + V+
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC--SEDQRTPLMEAAENNHLEAVK 61
Query: 471 ALVSAGAEV 479
L+ AGA V
Sbjct: 62 YLIKAGALV 70
Score = 66.7 bits (164), Expect = 1e-12
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
G++ LH+AA V L + V +++ G PL A+ + + A D
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 43.2 bits (103), Expect = 7e-05
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + PLH AA GH DI LV AGA +
Sbjct: 2 MNFKME--HQNKRSPLHAAAEAGHVDICHMLVQAGANI 37
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 109 bits (276), Expect = 2e-26
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LHVA+ G+L +V++LL++G V + PLH AA GHT++ + L+ A
Sbjct: 14 GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N K PLH AA GHT++V+ L+ A
Sbjct: 74 NAK--AKDDQTPLHCAARIGHTNMVKLLLENNANP 106
Score = 109 bits (275), Expect = 3e-26
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+ A G++ + L+K G V G+ PLH A+++G+ +V+ L+ AD
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N K G+ PLH+AA GHTDIV L+ GA
Sbjct: 338 NAK--TKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370
Score = 109 bits (274), Expect = 5e-26
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LHVA NL +V+ LL +G G+ PLH AA ++ ++L+ G
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N + G PLH AA GH ++V L+S A
Sbjct: 239 N--AESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Score = 109 bits (274), Expect = 5e-26
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+ ET LH+AA G+ + + LL+ V + PLH AA GHT++V+ L+ A+
Sbjct: 46 KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 105
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
PN + +AG PLH AA GH + V AL+ A
Sbjct: 106 PN--LATTAGHTPLHIAAREGHVETVLALLEKEASQ 139
Score = 108 bits (273), Expect = 6e-26
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA + + + +SLL+ G + G PLH AA GH ++V L+S A+
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N + + +G PLH A GH + L+ G V
Sbjct: 272 N--LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304
Score = 108 bits (272), Expect = 9e-26
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LHVAA G + + + LL++ G PLH A +H + DIV+ L+ G P
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ G+ PLH AA ++ ++L+ G
Sbjct: 206 H--SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Score = 107 bits (271), Expect = 1e-25
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G+ +V LL + + + +G PLH A GH + L+ G
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ G+ PLH A+++G+ +V+ L+ A+V
Sbjct: 305 DAT--TRMGYTPLHVASHYGNIKLVKFLLQHQADV 337
Score = 107 bits (269), Expect = 2e-25
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+T LH AA G+ +V+ LL+ + +AG PLH AA GH + V AL+ A
Sbjct: 80 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
G+ PLH AA +G + + L+ A
Sbjct: 140 ACM--TKKGFTPLHVAAKYGKVRVAELLLERDAHP 172
Score = 106 bits (266), Expect = 6e-25
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+AA G++ V +LL++ G+ PLH AA +G + + L+ A P
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N G PLH A +H + DIV+ L+ G
Sbjct: 173 NAA--GKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Score = 103 bits (259), Expect = 4e-24
Identities = 38/94 (40%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LHVA+ GN+ LV+ LL+ V + G+ PLH+AA GHTDIV L+ GA P
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
N+ S G PL A G+ + L E
Sbjct: 371 NEV--SSDGTTPLAIAKRLGYISVTDVLKVVTDE 402
Score = 82.5 bits (205), Expect = 4e-17
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQ 470
+G PLH A+ GH IV+ L+ GA PN + PLH AA GHT++ +
Sbjct: 7 GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVS--NVKVETPLHMAARAGHTEVAK 64
Query: 471 ALVSAGAEV 479
L+ A+V
Sbjct: 65 YLLQNKAKV 73
Score = 69.4 bits (171), Expect = 7e-13
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 14/97 (14%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL---VSAG 441
G + LH AA +G+ +V LLK G S G PL A G+ + L
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDET 403
Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
+ V D + V ++ +
Sbjct: 404 SFVL--VSDKHRM---------SFPETVDEILDVSED 429
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 103 bits (260), Expect = 2e-26
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
R T LH AA +++V+ LL+ G V +D G +PLH A ++GH ++ + LV GA
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N D + PLHEAA G +I + L+ GA+
Sbjct: 101 VNVA--DLWKFTPLHEAAAKGKYEICKLLLQHGADP 134
Score = 98.6 bits (247), Expect = 2e-24
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+ L AA G++ V+ L Q + + PLH AA + +V+ L+ GAD
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ K D G +PLH A ++GH ++ + LV GA V
Sbjct: 68 VHAK--DKGGLVPLHNACSYGHYEVAELLVKHGAVV 101
Score = 95.9 bits (240), Expect = 2e-23
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G LH A + G+ + + L+K G V V D + PLHEAA G +I + L+ GADP
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 134
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
K + G PL + G TDI L A
Sbjct: 135 TKK--NRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 70.9 bits (175), Expect = 8e-15
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 415 DSAGWLPLHEAANHGHTDIVQALVSA-GADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
+S L EAA G + V+ L + + D + PLH AA + +V+ L+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI--EGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 474 SAGAEV 479
GA+V
Sbjct: 63 QHGADV 68
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 103 bits (260), Expect = 3e-26
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
ET AA + + + LL+ V D G L A G V+ L AGAD
Sbjct: 43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 101
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + G LH AA + ++V+ALV GA++
Sbjct: 102 LDHRDMRG-GLTALHMAAGYVRPEVVEALVELGADI 136
Score = 100 bits (252), Expect = 4e-25
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGAD 443
G TAL A G+ V+ L + G + +D G LH AA + ++V+ALV GAD
Sbjct: 76 GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 135
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ D G L A T + G +
Sbjct: 136 IEVE--DERGLTALELAREILKTTPKGNPMQFGRRI 169
Score = 91.4 bits (228), Expect = 1e-21
Identities = 19/96 (19%), Positives = 27/96 (28%), Gaps = 6/96 (6%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
G + G+ V S P AA + L+ D
Sbjct: 13 EGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRD 68
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ D G L A G V+ L AGA++
Sbjct: 69 VDAV--DENGRTALLFVAGLGSDKCVRLLAEAGADL 102
Score = 67.1 bits (165), Expect = 3e-13
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G TALH+AA +V++L++ G ++V+D G L A T + G
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 169
Query: 445 NDK 447
+
Sbjct: 170 GLE 172
Score = 42.1 bits (100), Expect = 1e-04
Identities = 5/35 (14%), Positives = 8/35 (22%)
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
G + GH+ A+V
Sbjct: 6 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV 40
Score = 35.9 bits (84), Expect = 0.011
Identities = 9/56 (16%), Positives = 13/56 (23%), Gaps = 17/56 (30%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
G TAL +A T P+ G ++ L
Sbjct: 143 GLTALELAREILKTTPKG-----------------NPMQFGRRIGLEKVINVLEGQ 181
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 106 bits (266), Expect = 5e-26
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH A +V+ LL+ G ++ G P AA G +++ +S GAD
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N+ D G+ EAA +G ++ L GA V
Sbjct: 99 NEC--DFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Score = 104 bits (263), Expect = 2e-25
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQD-SAGWLPLHEAANHGHTDIVQALVSAGAD 443
L A ++ LVQ LL+ G V Q+ GW PLH A DIV+ L+ GAD
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
P + G P AA G +++ +S GA+V
Sbjct: 65 PVLR--KKNGATPFLLAAIAGSVKLLKLFLSKGADV 98
Score = 99.5 bits (249), Expect = 1e-23
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T +AA G++ L++ L +G V D G+ EAA +G ++ L GA+
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 445 NDK--------VQDSAGWLPLHEAANHGHTDIVQALVS-AGAEV 479
N + G L +AA GH ++++ L+ GA+V
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 175
Score = 93.7 bits (234), Expect = 1e-21
Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 385 GETALHVAAARGN----LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS- 439
G AL A + + LL G V V+ G PL A H +VQ L+
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241
Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ ND DS G L A I + L GA
Sbjct: 242 EHIEINDT--DSDGKTALLLAVELKLKKIAELLCKRGAST 279
Score = 86.4 bits (215), Expect = 4e-19
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 385 GETALHVAAARGNLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGHTD----IVQALVS 439
G TAL AA +G++ +++ LL + G V D+ G L A I L+
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS-AGAEV 479
GAD N + G PL A H +VQ L+ E+
Sbjct: 208 HGADVNVR--GERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246
Score = 70.6 bits (174), Expect = 9e-14
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 385 GETALHVAAARGNLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
G+T L +A + +L LVQ LL ++ + DS G L A I + L GA
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278
Query: 444 PNDK 447
+
Sbjct: 279 TDCG 282
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 102 bits (258), Expect = 1e-25
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
L A R + + L + V D+ G PL+ A ++ +I +AL+ GAD
Sbjct: 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
N + +S P A G T+I+ ++
Sbjct: 66 NLQ--NSISDSPYLYAGAQGRTEILAYMLKHAT 96
Score = 94.4 bits (236), Expect = 1e-22
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHP-VKVQDSAGWLPLHEAANHGHTDIVQALVSAG-A 442
++ A A+G ++ +LK P + + G L AA GH D V+ L+ G
Sbjct: 72 SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131
Query: 443 DPNDKVQDSAGWLPLHEAA-----NHGHTDIVQALVSAGAEV 479
D + + + G+ L EA N + DIV+ L+ GA+
Sbjct: 132 DIDFQ--NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ 171
Score = 91.7 bits (229), Expect = 1e-21
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHP-VKVQDSAGWLPLHEAA-----NHGHTDIVQALV 438
G AL AA +G++ V+ LL+ G + Q+ G+ L EA N + DIV+ L+
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165
Query: 439 SAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
GAD + K D++G + A G+T+I + L
Sbjct: 166 ENGADQSIK--DNSGRTAMDYANQKGYTEISKILAQ 199
Score = 78.6 bits (195), Expect = 4e-17
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 413 VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQAL 472
++ L A + + L ++ D+ G PL+ A ++ +I +AL
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEV--DTEGNTPLNIAVHNNDIEIAKAL 58
Query: 473 VSAGAEV 479
+ GA++
Sbjct: 59 IDRGADI 65
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 101 bits (254), Expect = 1e-25
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G + LH+AA G+ + + LL+ G + PLH AA+ GH +IV+ L+ GAD
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N K D LH A H H ++V+ L+ GA+V
Sbjct: 94 NAK--DMLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 97.8 bits (245), Expect = 2e-24
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
L AA G V+ L+ G P D G PLH AA +GH + L+ AG
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + PLH AA+ GH +IV+ L+ GA+V
Sbjct: 61 DAR--TKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Score = 92.4 bits (231), Expect = 2e-22
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
T LH+AA+ G+ +V+ LLK G V +D LH A H H ++V+ L+ GAD
Sbjct: 67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
+ + + ++G+ D+ + L
Sbjct: 127 HTQ--SKFCKTAFDISIDNGNEDLAEIL 152
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 106 bits (266), Expect = 2e-25
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
R T LH+AA + +VQ LL+ G V +D G +PLH A ++GH ++ + L+ GA
Sbjct: 57 RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N D + PLHEAA+ ++ L+S GA+
Sbjct: 117 VNAM--DLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
Score = 99.9 bits (250), Expect = 3e-23
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLT-LVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+ L AA GN L+ L D PLH AA + IVQ L+ GAD
Sbjct: 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ K D G +PLH A ++GH ++ + L+ GA V
Sbjct: 84 VHAK--DKGGLVPLHNACSYGHYEVTELLLKHGACV 117
Score = 99.1 bits (248), Expect = 4e-23
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 385 GETALHVAAARG---NLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG 441
ETALH A A + + LL++G V ++ PLH AA H D+++ L G
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270
Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
A N DS G LH AA GH + L+S G++
Sbjct: 271 AKMNAL--DSLGQTALHRAALAGHLQTCRLLLSYGSDP 306
Score = 98.3 bits (246), Expect = 8e-23
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G LH A + G+ + + LLK G V D + PLHEAA+ ++ L+S GADP
Sbjct: 91 GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
+ G + A + + +
Sbjct: 151 TLV--NCHGKSAVDMAPTPELRERLTYEFKGHS 181
Score = 90.6 bits (226), Expect = 3e-20
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGH---TDIVQALVSAG 441
G + L AA +L V+ L Q + LH A H + + L+ G
Sbjct: 179 GHSLLQ-AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237
Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
A+ N+K + PLH AA H D+++ L GA++
Sbjct: 238 ANVNEK--NKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273
Score = 89.1 bits (222), Expect = 1e-19
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
T LHVAA R + +++ L K G + DS G LH AA GH + L+S G+DP
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDP 306
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ G+ + VQ ++S +
Sbjct: 307 SII--SLQGFTAAQMGN-----EAVQQILSESTPM 334
Score = 78.3 bits (194), Expect = 5e-16
Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 22/117 (18%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA-- 442
T LH AA++ + + LL G + + G + A + + +
Sbjct: 124 QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL 183
Query: 443 -----------------DPNDKVQDSAGWLPLHEAANHGH---TDIVQALVSAGAEV 479
+ + Q + LH A H + + L+ GA V
Sbjct: 184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240
Score = 76.0 bits (188), Expect = 3e-15
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 16/96 (16%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAA-NHGHTDIVQALVSAGAD 443
G++AL L + L EAA + ++ L +
Sbjct: 4 GKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN 50
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ D PLH AA + IVQ L+ GA+V
Sbjct: 51 CHAS--DGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84
Score = 64.1 bits (157), Expect = 2e-11
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G+TALH AA G+L + LL G + G+ + VQ ++S
Sbjct: 280 GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPM 334
Query: 445 NDKVQDSAGWLPLHEAANHG 464
D L EA+ G
Sbjct: 335 RTS--DVDY--RLLEASKAG 350
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 104 bits (262), Expect = 2e-25
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 385 GETALHVAAARGNLTLVQSLLKQG---HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG 441
G+TALH+A + + LL + +Q+ G LH AA G V+ L +AG
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
A + G LH A L+
Sbjct: 69 AGVLVA--ERGGHTALHLACRVRAHTCACVLLQPRPSHP 105
Score = 100 bits (251), Expect = 5e-24
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGAD 443
G T LHVA + +V+ L G + + G PLH A +++ L+ AGAD
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
P + G PL A + + + L + GA
Sbjct: 218 PTAR--MYGGRTPLGSALLRPNPILARLLRAHGAPE 251
Score = 92.6 bits (231), Expect = 3e-21
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+A ++++ LLK G + G PL A + + + L + GA
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
+ P + + +D
Sbjct: 252 PED--GGDKLSPCSSSGSDSDSDNRDEG 277
Score = 92.6 bits (231), Expect = 3e-21
Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 3/135 (2%)
Query: 345 RLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSL 404
R+ A +L + S T T + A +
Sbjct: 87 RVRAHTCACVLLQPRPS--HPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144
Query: 405 LKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG 464
++ ++ G PLH A H ++V+ L AGAD N G PLH A
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC-GRTPLHLAVEAQ 203
Query: 465 HTDIVQALVSAGAEV 479
+++ L+ AGA+
Sbjct: 204 AASVLELLLKAGADP 218
Score = 83.7 bits (208), Expect = 3e-18
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 12/107 (11%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G+TALH+AA G + V+ L G V V + G LH A L+
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 445 NDKVQDSAGWLP------------LHEAANHGHTDIVQALVSAGAEV 479
D+ ++ + + ++
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL 151
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 106 bits (266), Expect = 2e-25
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+HVAA +G V+ L++ G +Q+ G LH A G D + L S G
Sbjct: 20 NMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH 79
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ G P+H A TD+V ALV E
Sbjct: 80 SLW----HGQKPIHLAVMANKTDLVVALVEGAKER 110
Score = 98.4 bits (246), Expect = 1e-22
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G + LH A + ++ G V ++D+ +PL+ + + + L+
Sbjct: 211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF 270
Query: 445 NDK-----------VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + AA+ +++Q L EV
Sbjct: 271 LIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316
Score = 97.2 bits (243), Expect = 3e-22
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHP-----VKVQDSAGWLPLHEAANHGHTDIVQALVS 439
ET L A N + ++ + + G LH A D+ V
Sbjct: 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232
Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
G D N + D+ +PL+ + + + L+
Sbjct: 233 MGIDVNME--DNEHTVPLYLSVRAAMVLLTKELLQKTDVF 270
Score = 95.7 bits (239), Expect = 7e-22
Identities = 12/108 (11%), Positives = 32/108 (29%), Gaps = 15/108 (13%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSA-------------GWLPLHEAANHGHT 431
L+++ + L + LL++ +Q + AA+
Sbjct: 244 HTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQ 303
Query: 432 DIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+++Q L + + G + + + ++ A V
Sbjct: 304 EVLQLLQEKLDEVVRS--LNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349
Score = 93.4 bits (233), Expect = 5e-21
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 9/102 (8%)
Query: 385 GETALHVAAARGNLTL--VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV---- 438
G+TALH G L ++ L++ G +D A PL A + + + ++
Sbjct: 138 GQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP 197
Query: 439 -SAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + + G LH A D+ V G +V
Sbjct: 198 SKSSLRLDYA--NKQGNSHLHWAILINWEDVAMRFVEMGIDV 237
Score = 83.4 bits (207), Expect = 1e-17
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G TALH+A G + + L G + G P+H A TD+V ALV +
Sbjct: 53 GCTALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKE- 109
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475
G +P ++ +
Sbjct: 110 -------RGQMPESLLNECDEREVNEIGSHV 133
Score = 81.1 bits (201), Expect = 7e-17
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQ 470
D +H AA G TD V+ L+ G P + + G LH A G D +
Sbjct: 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ--NRFGCTALHLACKFGCVDTAK 70
Query: 471 ALVSAGAEV 479
L S G
Sbjct: 71 YLASVGEVH 79
Score = 74.5 bits (184), Expect = 9e-15
Identities = 9/84 (10%), Positives = 25/84 (29%), Gaps = 2/84 (2%)
Query: 377 TSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQA 436
T L ++ + AA ++Q L ++ V + G + + +
Sbjct: 282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRM 341
Query: 437 LVSAGADPNDKVQDSAGWLPLHEA 460
++ A + + +
Sbjct: 342 KLAPSAPVRTR--SRSRARSSAVS 363
Score = 43.7 bits (104), Expect = 7e-05
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 437 LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ D +H AA G TD V+ L+ G
Sbjct: 6 TDFPKLNRIKS--DDENMEKIHVAARKGQTDEVRRLIETGVSP 46
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 100 bits (253), Expect = 4e-25
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
T L VA G + L++ ++ +D G L A + I + L+S G++
Sbjct: 35 NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV 94
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N K D +G PL + G++++ L+ GA V
Sbjct: 95 NTK--DFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127
Score = 98.6 bits (247), Expect = 3e-24
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G TAL A L + + LL +G V +D +G PL + G++++ L+ GA+
Sbjct: 68 GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
ND+ + G PL A+ +G ++IV+ L+ GA++
Sbjct: 128 NDR--NLEGETPLIVASKYGRSEIVKKLLELGADI 160
Score = 92.5 bits (231), Expect = 5e-22
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G+T L + G + LL+ G V ++ G PL A+ +G ++IV+ L+ GAD
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI 160
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
+ + D G A G ++++
Sbjct: 161 SAR--DLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 84.4 bits (210), Expect = 4e-19
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 8/95 (8%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
GE + + + L +DS PL A G + + LV
Sbjct: 8 GEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL 61
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
DK D G L A + I + L+S G+ V
Sbjct: 62 EDK--DIEGSTALIWAVKNNRLGIAEKLLSKGSNV 94
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 102 bits (256), Expect = 5e-25
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G + L A +L++VQ LL+ G V Q +G LH A+ G +V+ LV +GAD
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 209
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
+ K + PL A + DI++ + A
Sbjct: 210 SLK--NCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 100 bits (251), Expect = 3e-24
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHP----VKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
G+TA H+A + T +++LL P ++ ++ G LH A N + VQ L+
Sbjct: 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER 138
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
GAD + S G PL A + +VQ L+ GA V
Sbjct: 139 GADIDAVDIKS-GRSPLIHAVENNSLSMVQLLLQHGANV 176
Score = 99.4 bits (249), Expect = 4e-24
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+T LH+A ++V+ L+ G D G H A H ++AL+ + A
Sbjct: 46 RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPG 105
Query: 445 NDKV--QDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ ++ G LH A N + VQ L+ GA++
Sbjct: 106 TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI 142
Score = 99.1 bits (248), Expect = 7e-24
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGAD 443
G TALHVA VQ LL++G + D +G PL A + +VQ L+ GA+
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N + +G LH A+ G +V+ LV +GA+
Sbjct: 176 VNAQ--MYSGSSALHSASGRGLLPLVRTLVRSGADS 209
Score = 97.9 bits (245), Expect = 2e-23
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 385 GETALHVAAARGNLTLVQSLL----KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
G+T LH+A +GNL V L+ + G + + ++ PLH A +V+ LV+A
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
GA P D G H A H ++AL+ + A +
Sbjct: 69 GASPMAL--DRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106
Score = 71.3 bits (176), Expect = 3e-14
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 414 QDSAGWLPLHEAANHGHTDIVQALVS----AGADPNDKVQDSAGWLPLHEAANHGHTDIV 469
D G PLH A G+ V LV+ G + + ++ PLH A +V
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVV 62
Query: 470 QALVSAGAEV 479
+ LV+AGA
Sbjct: 63 RLLVTAGASP 72
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 98.2 bits (246), Expect = 9e-25
Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
L AA G V+ L+ G V +D G PL+ A HGH +IV+ L+ GAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N D+ G+ PLH AA GH +I + L+ GA+V
Sbjct: 74 NAV--DAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
Score = 92.4 bits (231), Expect = 1e-22
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T L++A A G+L +V+ LLK G V D+ G+ PLH AA GH +I + L+ GAD
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
N + D G + +G+ D+ + L
Sbjct: 107 NAQ--DKFGKTAFDISIGNGNEDLAEILQK 134
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 100 bits (253), Expect = 9e-25
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G++ALH AAA N+ LLK G +Q++ PL AA G + + L+ A+
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 184
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
+ D LP A H DIV+ L S
Sbjct: 185 DIT--DHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Score = 99.0 bits (248), Expect = 4e-24
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
G T LH A + + Q L++ + + G PL AA +++ L+++ AD
Sbjct: 58 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 117
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N D G LH AA + D L+ GA
Sbjct: 118 VNAV--DDLGKSALHWAAAVNNVDAAVVLLKNGANK 151
Score = 99.0 bits (248), Expect = 5e-24
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T L +AA +++ L+ V D G LH AA + D L+ GA+
Sbjct: 92 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 151
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + ++ PL AA G + + L+ A
Sbjct: 152 DMQ--NNREETPLFLAAREGSYETAKVLLDHFANR 184
Score = 95.9 bits (240), Expect = 6e-23
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA-D 443
GETALH+AA + LL+ +QD+ G PLH A + + Q L+ A D
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + G PL AA +++ L+++ A+V
Sbjct: 85 LDAR--MHDGTTPLILAARLAVEGMLEDLINSHADV 118
Score = 79.4 bits (197), Expect = 4e-17
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 396 GNLTLVQSLLKQGHPVK-VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGW 454
++ + QG + D G LH AA + +D + L+ A AD N + D+ G
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ--DNMGR 59
Query: 455 LPLHEAANHGHTDIVQALVSAGA 477
PLH A + + Q L+ A
Sbjct: 60 TPLHAAVSADAQGVFQILIRNRA 82
Score = 55.5 bits (135), Expect = 5e-09
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 429 GHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
++ + GA +++ D G LH AA + +D + L+ A A+
Sbjct: 2 DAPAVISDFIYQGASLHNQ-TDRTGETALHLAARYSRSDAAKRLLEASADA 51
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 101 bits (254), Expect = 1e-24
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
ET AA + + + LL + V D G L A G V+ L AGAD
Sbjct: 44 EYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 102
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + G LH AA + ++V+ALV GA++
Sbjct: 103 LDHRDMRG-GLTALHMAAGYVRPEVVEALVELGADI 137
Score = 99 bits (250), Expect = 4e-24
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGAD 443
G TAL A G+ V+ L + G + +D G LH AA + ++V+ALV GAD
Sbjct: 77 GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 136
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ D G L A T + G +
Sbjct: 137 IEVE--DERGLTALELAREILKTTPKGNPMQFGRRI 170
Score = 79.6 bits (197), Expect = 4e-17
Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 20/115 (17%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G TALH+AA +V++L++ G ++V+D G L A T + G
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 170
Query: 445 NDK--------------------VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + G + D AE
Sbjct: 171 GLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAED 225
Score = 71.9 bits (177), Expect = 2e-14
Identities = 12/95 (12%), Positives = 20/95 (21%), Gaps = 25/95 (26%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
GE + + G + GH+ AD
Sbjct: 1 GEVNKIIGSRTAG-------------------EGAMEYLIEWKDGHSPSWVPSSYIAADV 41
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ P AA + L+ +V
Sbjct: 42 VSE-----YETPWWTAARKADEQALSQLLE-DRDV 70
Score = 57.6 bits (140), Expect = 1e-09
Identities = 13/103 (12%), Positives = 23/103 (22%), Gaps = 26/103 (25%)
Query: 385 GETALHVAAARGNLTLVQSLLKQG--------------------HPVKV--QDSAGWLPL 422
G TAL +A T + ++ G ++ + G
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVE 203
Query: 423 HEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGH 465
+ D A+ K + L A
Sbjct: 204 YLVRWKDGGDCEWVKGVHVAEDVAKDYEDG----LEYAVAESV 242
Score = 39.5 bits (93), Expect = 0.001
Identities = 5/90 (5%), Positives = 20/90 (22%), Gaps = 8/90 (8%)
Query: 347 GAQEVRKLLSLLNADL----LVHLNLSATLETPTTS--LLEKPRGETALHVAAARGNLTL 400
+ + ++++ E + ++ +G+ ++ +
Sbjct: 155 LKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDC 214
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGH 430
+D L A
Sbjct: 215 EWVKGVHVAEDVAKDYED--GLEYAVAESV 242
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 102 bits (256), Expect = 1e-24
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G +A + A A N+ LV +LL G + + PLH+AA T IV+ L+ +G D
Sbjct: 31 GHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDD 88
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ D G L+ A + G+ V+ V +
Sbjct: 89 SQF--DDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121
Score = 100 bits (251), Expect = 7e-24
Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
E LH AA + +V+ LL G D G L+ A + G+ V+ V
Sbjct: 62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121
Query: 445 NDKVQDSAGWL-PLHEAANHGHTDIVQALVSAGA 477
GW + A IV +S
Sbjct: 122 MFY--GKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153
Score = 98.8 bits (247), Expect = 2e-23
Identities = 17/96 (17%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+T+ + A ++++V L + P + +H +GH D++ L+
Sbjct: 129 WKTSFYHAVMLNDVSIVSYFLSEI-PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTST 187
Query: 445 NDKVQDSAGWLP-LHEAANHGHTDIVQALVSAGAEV 479
N +S ++P + A ++ +++QAL +
Sbjct: 188 NTN--NSLLFIPDIKLAIDNKDIEMLQALFKYDINI 221
Score = 91.8 bits (229), Expect = 5e-21
Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLP-LHEAANHGHTDIVQALVSAGAD 443
+ +H+ G++ ++ LL +S ++P + A ++ +++QAL +
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
E +I + ++ E
Sbjct: 221 IYS---------ANLENVLLDDAEIAKMIIEKHVEY 247
Score = 86.4 bits (215), Expect = 4e-19
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G + ++S L D G + A + +V L++AGA
Sbjct: 1 GMDLSRINT--WKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N PLH+AA T IV+ L+ +G +
Sbjct: 58 NLL----ENEFPLHQAATLEDTKIVKILLFSGLDD 88
Score = 63.7 bits (156), Expect = 2e-11
Identities = 7/90 (7%), Positives = 24/90 (26%), Gaps = 10/90 (11%)
Query: 385 GET-ALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+ +A ++ ++Q+L K + + E +I + ++ +
Sbjct: 194 LFIPDIKLAIDNKDIEMLQALFKYD--INIYS-----ANLENVLLDDAEIAKMIIEKHVE 246
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
L + + +
Sbjct: 247 YKSD--SYTKDLDIVKNNKLDEIISKNKEL 274
Score = 41.0 bits (97), Expect = 5e-04
Identities = 3/58 (5%), Positives = 14/58 (24%)
Query: 386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+A + + + ++++ K L + + +
Sbjct: 222 YSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYV 279
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 100 bits (252), Expect = 2e-24
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G++ALH AAA N+ LLK G +Q++ PL AA G + + L+ A+
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 216
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
+ D LP A H DIV+ L
Sbjct: 217 DIT--DHMDRLPRDIAQERMHHDIVRLLDLEHH 247
Score = 99.1 bits (248), Expect = 8e-24
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T L +AA +++ L+ V D G LH AA + D L+ GA+
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + ++ PL AA G + + L+ A
Sbjct: 184 DMQ--NNREETPLFLAAREGSYETAKVLLDHFANR 216
Score = 98.7 bits (247), Expect = 1e-23
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
G T LH A + + Q L++ + + G PL AA +++ L+++ AD
Sbjct: 90 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 149
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N D G LH AA + D L+ GA
Sbjct: 150 VNAV--DDLGKSALHWAAAVNNVDAAVVLLKNGANK 183
Score = 97.2 bits (243), Expect = 4e-23
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA-D 443
GETALH+AA + LL+ +QD+ G PLH A + + Q L+ A D
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + G PL AA +++ L+++ A+V
Sbjct: 117 LDAR--MHDGTTPLILAARLAVEGMLEDLINSHADV 150
Score = 89.4 bits (223), Expect = 2e-20
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 16/107 (14%)
Query: 385 GETALHVAAARGNLT-------------LVQSLLKQG-HPVKVQDSAGWLPLHEAANHGH 430
G T L +A+ G ++ + QG D G LH AA +
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 69
Query: 431 TDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
+D + L+ A AD N + D+ G PLH A + + Q L+ A
Sbjct: 70 SDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRA 114
Score = 70.6 bits (174), Expect = 7e-14
Identities = 17/63 (26%), Positives = 23/63 (36%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
ET L +AA G+ + LL + D LP A H DIV+ L
Sbjct: 190 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249
Query: 445 NDK 447
+
Sbjct: 250 HHH 252
Score = 33.2 bits (77), Expect = 0.13
Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 22/70 (31%)
Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQ 470
V V+ G+ PL A+ G G + ++
Sbjct: 3 VNVRGPDGFTPLMIASCSGG----------------------GLETGNSEEEEDAPAVIS 40
Query: 471 ALVSAGAEVS 480
+ GA +
Sbjct: 41 DFIYQGASLH 50
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 100 bits (251), Expect = 8e-24
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
+ + + G+ T ++ + + KV+ G A + G T+ V L+ GAD
Sbjct: 7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERGAD 65
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N D G LH+A + D+V+ LV GA +
Sbjct: 66 INYANVD--GLTALHQACIDDNVDMVKFLVENGANI 99
Score = 100 bits (251), Expect = 9e-24
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
K A + G+ V LL++G + + G LH+A + D+V+ LV
Sbjct: 36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
GA+ N D+ GW+PLH AA+ G+ DI + L+S GA V
Sbjct: 96 GANINQP--DNEGWIPLHAAASCGYLDIAEYLISQGAHV 132
Score = 98.0 bits (245), Expect = 6e-23
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G TALH A N+ +V+ L++ G + D+ GW+PLH AA+ G+ DI + L+S GA
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAG 476
+S G PL A +++Q V+
Sbjct: 133 GAV--NSEGDTPLDIAEEEAMEELLQNEVNRQ 162
Score = 93.3 bits (233), Expect = 2e-21
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G TALHVAAA+G +++ L++ + V ++D GW PLH AA+ G + + LV D
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
+ G A + + S
Sbjct: 259 EAV--NKVGQTAFDVADEDILGYLEELQKKQNLLHS 292
Score = 61.7 bits (151), Expect = 1e-10
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQ 470
+K+ D+ G ++ V K G A + G T+ V
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVK--FDDGA-VFLAACSSGDTEEVL 57
Query: 471 ALVSAGAEV 479
L+ GA++
Sbjct: 58 RLLERGADI 66
Score = 54.8 bits (133), Expect = 2e-08
Identities = 11/63 (17%), Positives = 21/63 (33%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH AA G + L++ ++ + G A + +
Sbjct: 232 GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLH 291
Query: 445 NDK 447
++K
Sbjct: 292 SEK 294
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 98.3 bits (246), Expect = 1e-23
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGH--PVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
G T H+A + GNL +V+SL + + + G LH A ++ Q L+ GA
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
K D +PLH AA+ G +++ L G
Sbjct: 132 SVRIK--DKFNQIPLHRAASVGSLKLIELLCGLGK 164
Score = 96.7 bits (242), Expect = 3e-23
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 385 GETALHVAAARGNLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
LH A VQ LL + + +D G +PLH + + +I L+S +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 444 PNDK-VQDSAGWLPLHEAANHGHTDIVQALVS--AGAEV 479
N D +GW P H A + G+ ++V++L ++
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL 100
Score = 96.7 bits (242), Expect = 4e-23
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG-AD 443
G T LH+A + + Q L++ G V+++D +PLH AA+ G +++ L G +
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA 166
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSA-GAEV 479
N + D GW PL A GH D LV GAE
Sbjct: 167 VNWQ--DKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201
Score = 96.0 bits (240), Expect = 7e-23
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSA---GWLPLHEAANHGHTDIVQALVS-- 439
G LH + + + LL + V + D GW P H A + G+ ++V++L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
D N + G LH A ++ Q L+ GA V
Sbjct: 96 LKPDLNKI--TNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Score = 83.3 bits (207), Expect = 2e-18
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGH-PVKVQDSAGWLPLHEAANHGHTDIVQALVSA-GA 442
+ LH AA+ G+L L++ L G V QD GW PL A GH D LV GA
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 199
Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
+ + D+ G A N + + ++
Sbjct: 200 EYDLV--DNKGAKAEDVALNE---QVKKFFLN 226
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 98.0 bits (245), Expect = 1e-23
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSA-GWLPLHEAANHGHTDIVQALVSAGAD 443
G T LH+A+ G L +V+ L+ G V Q+ G LH A + + D+V L+ GAD
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
N G+ P T I Q L E
Sbjct: 177 VNRV--TYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210
Score = 98.0 bits (245), Expect = 2e-23
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 385 GETALHVAAARGNLTLVQSLLKQG------HPVKVQDSAGWLPLHEAANHGHTDIVQALV 438
G T LH+A +G L V L + +K + G LH A+ HG+ IV+ LV
Sbjct: 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137
Query: 439 SAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
S GAD N + + G LH A + + D+V L+ GA+V
Sbjct: 138 SLGADVNAQEPCN-GRTALHLAVDLQNPDLVSLLLKCGADV 177
Score = 97.6 bits (244), Expect = 2e-23
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 385 GETALHVAAARGN----LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
G++ LH+A + +++ + + Q++ PLH A +I +AL+ A
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
G DP + D G PLH A G V L +
Sbjct: 68 GCDPELR--DFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Score = 97.6 bits (244), Expect = 2e-23
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+T LH+A + ++LL G +++D G PLH A G V L + P
Sbjct: 45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 445 NDK----VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + G LH A+ HG+ IV+ LVS GA+V
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 143
Score = 77.2 bits (191), Expect = 3e-16
Identities = 23/89 (25%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
E G TALH+A N LV LLK G V G+ P T I Q L
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIV 469
+ + +S T+
Sbjct: 207 TLENLQMLPESED--EESYDTESEFTEFT 233
Score = 68.7 bits (169), Expect = 2e-13
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 414 QDSAGWLPLHEAANHGHT----DIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIV 469
G LH A H ++++ + A N + ++ PLH A +I
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ--NNLQQTPLHLAVITNQPEIA 61
Query: 470 QALVSAGAEV 479
+AL+ AG +
Sbjct: 62 EALLGAGCDP 71
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 99.6 bits (249), Expect = 5e-23
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQ-GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
G TALH AA N+ +V+ L+ + G QD G P+ AA G ++V L+ GA
Sbjct: 279 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS 338
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
D+ A + H +IV E
Sbjct: 339 VEAV--DATDHTARQLAQANNHHNIVDIFDRCRPER 372
Score = 91.9 bits (229), Expect = 2e-20
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 13/106 (12%)
Query: 385 GETALHVAAARGNLTLVQSLL--------KQGHPVKVQDSAGWLPLHEAANHGHTDIVQA 436
T LH A+ + + L+ G V D PL A +V
Sbjct: 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 184
Query: 437 LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS---AGAEV 479
L+ AGADP + + LH+AA + ++ +++ ++
Sbjct: 185 LMKAGADPTIY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228
Score = 91.2 bits (227), Expect = 3e-20
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS---AG 441
T L +A LV L+K G + + + LH+AA + ++ +++
Sbjct: 166 ENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK 225
Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTD---IVQALVSAGAEV 479
D + D G L A++ D + LV GA+V
Sbjct: 226 GDIEEL--DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264
Score = 87.7 bits (218), Expect = 4e-19
Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 4/94 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
GN L + + LH A G I + + +
Sbjct: 61 SLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNI 119
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
D LH A++ + + L+ A+
Sbjct: 120 ID---PRHNRTVLHWIASNSSAEKSEDLIVHEAK 150
Score = 84.6 bits (210), Expect = 5e-18
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHP---VKVQDSAGWLPLHEAANHGHTD---IVQALV 438
+ALH AAA + ++ +L ++ D G L A++ D + LV
Sbjct: 199 ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV 258
Query: 439 SAGADPNDKV------QDSAGWLPLHEAANHGHTDIVQALVS-AGAEV 479
GA + + G LH AA + IV+ LV G+
Sbjct: 259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK 306
Score = 78.8 bits (195), Expect = 4e-16
Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 12/95 (12%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+ +L A+ G + ++ L P + +G+ + + P
Sbjct: 37 SQHSLLEASYDGYIKRQRNEL---------QHYSLYPNPQGYGNGNDFLGDFNHTNLQIP 87
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + + LH A G I + + +
Sbjct: 88 TEP--EPESPIKLHTEAA-GSYAITEPITRESVNI 119
Score = 47.3 bits (113), Expect = 6e-06
Identities = 7/72 (9%), Positives = 18/72 (25%), Gaps = 11/72 (15%)
Query: 408 GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
++ L EA+ G+ + N+ P + +G+
Sbjct: 27 NRKNHQSITSSQHSLLEASYDGYIKRQR---------NEL--QHYSLYPNPQGYGNGNDF 75
Query: 468 IVQALVSAGAEV 479
+ +
Sbjct: 76 LGDFNHTNLQIP 87
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 92.6 bits (231), Expect = 5e-23
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
++ + L+ +G + S L EAA G D V+ L++ GAD K D
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAAK--DK 55
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAEV 479
G PLH AA +GH ++V+ L+ AGA+V
Sbjct: 56 NGSTPLHLAARNGHLEVVKLLLEAGADV 83
Score = 89.2 bits (222), Expect = 9e-22
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
L AA G V+ L+ G V +D G PLH AA +GH ++V+ L+ AGAD
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
+ D G + ++G+ D+ + L
Sbjct: 84 XAQ--DKFGKTAFDISIDNGNEDLAEIL 109
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 93.1 bits (232), Expect = 8e-22
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 16/111 (14%)
Query: 385 GETALHVAAARGNLTLVQSLLKQG-----HPVKVQDSAGWLPLHEAANHGHTDIVQALVS 439
GETALH+AA NL L++ P+ + G LH A + + ++V+AL++
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 440 AGADPNDKVQDSA-----------GWLPLHEAANHGHTDIVQALVSAGAEV 479
GA + + S G PL AA G +IV+ L+ GA++
Sbjct: 97 RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI 147
Score = 90.4 bits (225), Expect = 7e-21
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQA----LVSA 440
GE L AA G+ +V+ L++ G ++ QDS G LH + L+S
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY 180
Query: 441 GADPNDK----VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ K V ++ G P A G+ + Q L+ +
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223
Score = 90.0 bits (224), Expect = 1e-20
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLK-QGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
E+ L +AA ++ + LLK +G V + + G LH AA + + + L+ A +
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 444 PNDK---VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + G LH A + + ++V+AL++ GA V
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV 101
Score = 85.3 bits (212), Expect = 4e-19
Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 19/113 (16%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQG-------------HPVKVQDSAGWLPLHEAANHGH 430
G+TALH+A N+ LV++LL +G + G PL AA G
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 431 TDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQA----LVSAGAEV 479
+IV+ L+ GAD + DS G LH + L+S
Sbjct: 134 EEIVRLLIEHGADIRAQ--DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184
Score = 62.6 bits (153), Expect = 2e-11
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 421 PLHEAANHGHTDIVQA-LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
PL AA + L G + + + + G LH AA + + + L+ A E+
Sbjct: 6 PLLLAAKENDVQALSKLLKFEGCEVHQR--GAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 480 S 480
Sbjct: 64 V 64
Score = 58.4 bits (142), Expect = 5e-10
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 10/73 (13%)
Query: 385 GETALHVAAARGNLTLVQS----LLKQG------HPVKVQDSAGWLPLHEAANHGHTDIV 434
G T LH+ + N T LL V ++ G P A G+ +
Sbjct: 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMF 213
Query: 435 QALVSAGADPNDK 447
Q L+
Sbjct: 214 QHLMQKRKHIAAA 226
Score = 32.6 bits (75), Expect = 0.23
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAG 418
G T +A GN+ + Q L+++ +
Sbjct: 197 GLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHH 230
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 91.1 bits (226), Expect = 3e-21
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
++A + L + +L D LH A + GHT+IV+ L+ G
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
NDK D AGW PLH AA+ G +IV+AL+ GA V+
Sbjct: 67 NDK--DDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100
Score = 84.5 bits (209), Expect = 6e-19
Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
TALH A + G+ +V+ LL+ G PV +D AGW PLH AA+ G +IV+AL+ GA
Sbjct: 40 SRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV 99
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N + G PLH AA+ +I L+ GA
Sbjct: 100 NAV--NQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Score = 82.6 bits (204), Expect = 4e-18
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G + LH+AA+ G +V++LL +G V + G PLH AA+ +I L+ GA+P
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
+ K D +H AA G+ +V L+ A +
Sbjct: 133 DAK--DHYDATAMHRAAAKGNLKMVHILLFYKASTN 166
Score = 76.8 bits (189), Expect = 4e-16
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH AA++ + LL+ G +D +H AA G+ +V L+ A
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
N + D+ G PLH A + + + LV+ GA +
Sbjct: 166 NIQ--DTEGNTPLHLACDEERVEEAKFLVTQGASIY 199
Score = 75.3 bits (185), Expect = 1e-15
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
TA+H AAA+GNL +V LL +QD+ G PLH A + + + LV+ GA
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + PL A G ++ ++ G E
Sbjct: 199 YIE--NKEEKTPLQVAK--GGLGLILKRLAEGEEA 229
Score = 53.7 bits (129), Expect = 2e-08
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
G T LH+A + + L+ QG + +++ PL A G ++ ++ G +
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEA 229
Query: 445 N 445
+
Sbjct: 230 S 230
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 86.7 bits (215), Expect = 5e-20
Identities = 11/108 (10%), Positives = 27/108 (25%), Gaps = 15/108 (13%)
Query: 385 GETALHVAAARGNLT------LVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQA-- 436
G T G L + L++G + + + + + D +
Sbjct: 75 GTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIP 134
Query: 437 -----LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+G ++D G L ++ + +
Sbjct: 135 LYKLIFSQSGLQLL--IKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180
Score = 80.9 bits (200), Expect = 5e-18
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 11/104 (10%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKV---QDSAGWLPLHEAANHGHTDIVQALVSAG 441
+ AA G L ++G+ K + + + L + I L++ G
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65
Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDI------VQALVSAGAEV 479
AD + G G DI + + GA++
Sbjct: 66 ADIK--SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI 107
Score = 76.3 bits (188), Expect = 2e-16
Identities = 13/108 (12%), Positives = 28/108 (25%), Gaps = 15/108 (13%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDI------VQALV 438
L + L+ +G +K + G G DI + +
Sbjct: 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL 101
Query: 439 SAGADPNDKVQDSAGWLPLHEAANHGHTDIVQA-------LVSAGAEV 479
GAD + + + + D + +G ++
Sbjct: 102 EKGADIT--ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL 147
Score = 61.6 bits (150), Expect = 3e-11
Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 7/71 (9%)
Query: 384 RGETALHVAAARGNLT------LVQSLLKQ-GHPVKVQDSAGWLPLHEAANHGHTDIVQA 436
+ + + L + + Q G + ++D G L ++
Sbjct: 113 PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKM 172
Query: 437 LVSAGADPNDK 447
+ N K
Sbjct: 173 MEDYIKKYNLK 183
Score = 32.3 bits (74), Expect = 0.18
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDS 416
G TAL ++ + ++++
Sbjct: 154 GLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 88.5 bits (219), Expect = 3e-19
Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSA--GWLPLHEAANHGHTDIVQALVSAG 441
A +AA G+L ++ L + + + AA +GH ++ L
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 186
Query: 442 ADPNDKVQDSAGWLPLHEAA-NHGHTDIVQALVSAGAEVS 480
+ + + AA GH +++ L+ ++
Sbjct: 187 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 226
Score = 88.1 bits (218), Expect = 3e-19
Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 12/166 (7%)
Query: 321 LIKRNDKDSNLNLYNIESITISRNRLGA----QEVRKLLSLLNADLLVHLNLSATLETPT 376
L + + L+L + L ++VR+LL L A + +
Sbjct: 29 LFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSD---- 84
Query: 377 TSLLEKPRGETALHVAAARGN---LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDI 433
+ + + E VAA G L + LL VKV + + AA +GH +
Sbjct: 85 -AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV 143
Query: 434 VQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ L + + + AA +GH ++ L
Sbjct: 144 LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 189
Score = 69.2 bits (169), Expect = 6e-13
Identities = 13/101 (12%), Positives = 24/101 (23%), Gaps = 13/101 (12%)
Query: 385 GETALHVAAARGNLTLVQSL--------LKQGHPVKVQDSAGWLPLHEAANHGHTDIVQA 436
G L R + L+ + +K P L A G+
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337
Query: 437 LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
L+S + + + G D+ +
Sbjct: 338 LLSIPSVLALTKAN-----NYYINETGGRLDLRAVALEHHH 373
Score = 58.4 bits (141), Expect = 2e-09
Identities = 14/103 (13%), Positives = 26/103 (25%), Gaps = 19/103 (18%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL------- 437
A ++ G LV K + G+ L ++ +
Sbjct: 254 MHDAFKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304
Query: 438 -VSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ A A L A G+ L+S + +
Sbjct: 305 GIKALAPTA--TIPGDANELLRLALRLGNQGACALLLSIPSVL 345
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 83.7 bits (207), Expect = 2e-18
Identities = 26/119 (21%), Positives = 36/119 (30%), Gaps = 25/119 (21%)
Query: 385 GETALHVAAAR---GNLTLVQSLLKQGH-----------PVKVQDSAGWLPLHEAANHGH 430
G+T L A G + LL+ + G LH A
Sbjct: 43 GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 102
Query: 431 TDIVQALVSAGADPNDKVQDSA-----------GWLPLHEAANHGHTDIVQALVSAGAE 478
V+ LV GAD + + G LPL AA D+V L+ +
Sbjct: 103 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161
Score = 83.3 bits (206), Expect = 3e-18
Identities = 23/123 (18%), Positives = 35/123 (28%), Gaps = 21/123 (17%)
Query: 374 TPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGH---PVKVQDSAGWLPLHEAANH-- 428
GE L +AA +V LL+ H ++ DS G LH
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184
Query: 429 --------------GHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
G + L + + G PL AA G +I + ++
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEE--ISNHQGLTPLKLAAKEGKIEIFRHILQ 242
Query: 475 AGA 477
Sbjct: 243 REF 245
Score = 79.8 bits (197), Expect = 5e-17
Identities = 26/126 (20%), Positives = 37/126 (29%), Gaps = 30/126 (23%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQG-------------HPVKVQDSAGWLPLHEAANHGH 430
+G +ALH+A + +L V+ L++ G G LPL AA
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 431 TDIVQALVSAGADPNDK-VQDSAGWLPLHEAANH----------------GHTDIVQALV 473
D+V L+ P DS G LH G + L
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 208
Query: 474 SAGAEV 479
Sbjct: 209 PTVQLE 214
Score = 78.7 bits (194), Expect = 1e-16
Identities = 22/115 (19%), Positives = 32/115 (27%), Gaps = 20/115 (17%)
Query: 385 GETALHVAAARGNLTLVQSLLK--------QGHPVKVQDSAGWLPLHEAA---NHGHTDI 433
L +RG + LL+ + S G L +A G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 434 VQALVSAGADPNDKVQ---------DSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ L+ D + G LH A V+ LV GA+V
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 116
Score = 62.5 bits (152), Expect = 4e-11
Identities = 12/63 (19%), Positives = 22/63 (34%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
+AL + G L + L ++ + G PL AA G +I + ++
Sbjct: 188 ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247
Query: 445 NDK 447
Sbjct: 248 AAA 250
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 83.7 bits (207), Expect = 3e-18
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 15/104 (14%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQG--------------HPVKVQDSAGWLPLHEAANHG 429
+G+TALH+A R N+TLV L++ G + G LPL AA
Sbjct: 100 KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Query: 430 HTDIVQALVSAGADPNDK-VQDSAGWLPLHEAANHGHTDIVQAL 472
IV+ L+ P D +DS G LH +
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTK 203
Score = 80.6 bits (199), Expect = 3e-17
Identities = 26/120 (21%), Positives = 33/120 (27%), Gaps = 26/120 (21%)
Query: 385 GETALHVAAA---RGNLTLVQSLLKQGH-----------PVKVQDSAGWLPLHEAANHGH 430
G+T L A G + LL G LH A +
Sbjct: 54 GKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN 113
Query: 431 TDIVQALVSAGADPNDKVQDSA------------GWLPLHEAANHGHTDIVQALVSAGAE 478
+V LV GAD G LPL AA IV+ L+ +
Sbjct: 114 MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ 173
Score = 80.2 bits (198), Expect = 4e-17
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 17/111 (15%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHP---VKVQDSAGWLPLHEAANHGHTDIVQA---- 436
GE L +AA L +V+ LL+ + +DS G LH +
Sbjct: 147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVT 206
Query: 437 -----LVSAGADPNDK-----VQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
++ GA + + + G PL AA+ G ++ ++
Sbjct: 207 SMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257
Score = 74.4 bits (183), Expect = 4e-15
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 20/120 (16%)
Query: 381 EKPRGETALHVAAARGNLTLVQSLL-------KQGHPVKVQDSA-GWLPLHEA---ANHG 429
+ ++ A A+ N ++SLL K+ + +D G L +A ++G
Sbjct: 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNG 68
Query: 430 HTDIVQALVSAGADP---------NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
D + L+ + G LH A + +V LV GA+V
Sbjct: 69 QNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128
Score = 67.1 bits (164), Expect = 1e-12
Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 25/100 (25%)
Query: 384 RGETALHVAAARGN----------------LTLVQSLLKQGHPVKVQDSAGWLPLHEAAN 427
G T LH + L L L ++ + G PL AA+
Sbjct: 183 VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS 242
Query: 428 HGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
G ++ ++ H AA+H H
Sbjct: 243 SGKIGVLAYILQREIH---------EPECRHAAAHHHHHH 273
Score = 28.2 bits (63), Expect = 6.2
Identities = 4/35 (11%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 439 SAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
S A + +A + +++L+
Sbjct: 1 SVSAGEKPP--RLYDRRSIFDAVAQSNCQELESLL 33
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 81.0 bits (200), Expect = 2e-17
Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 17/112 (15%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHP---VKVQDSAGWLPLHEAANHGH---------TD 432
GE L +AA +V L + GH ++ QDS G LH T
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199
Query: 433 IVQALVSAGADPNDK-----VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ L+ A + ++ G PL AA G I Q ++
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251
Score = 77.9 bits (192), Expect = 2e-16
Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 28/122 (22%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQG--------------HPVKVQDSAGWLPLHEAANHG 429
RG+TALH+A R V+ L+++G G LPL AA
Sbjct: 92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151
Query: 430 HTDIVQALVSAG---ADPNDKVQDSAGWLPLHEAANHGH---------TDIVQALVSAGA 477
IV L G AD QDS G LH T + L+ A
Sbjct: 152 QPHIVHYLTENGHKQADLR--RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA 209
Query: 478 EV 479
++
Sbjct: 210 KL 211
Score = 77.1 bits (190), Expect = 4e-16
Identities = 28/120 (23%), Positives = 37/120 (30%), Gaps = 26/120 (21%)
Query: 385 GETALHVAA---ARGNLTLVQSLLKQGH-----------PVKVQDSAGWLPLHEAANHGH 430
G+T L A + G + LL P + G LH A
Sbjct: 46 GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC 105
Query: 431 TDIVQALVSAGADPNDKVQDSA------------GWLPLHEAANHGHTDIVQALVSAGAE 478
V+ LV GAD + + + G LPL AA IV L G +
Sbjct: 106 KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165
Score = 68.7 bits (168), Expect = 3e-13
Identities = 24/118 (20%), Positives = 35/118 (29%), Gaps = 20/118 (16%)
Query: 382 KPRGETALHVAAARGNLT----LVQSLLKQG----HPVKVQDSAGWLPLHEAA---NHGH 430
K L +RG+ L+ LL + S G L +A + G
Sbjct: 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61
Query: 431 TDIVQALVSAGADP---------NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
D + L+ + G LH A V+ LV GA+V
Sbjct: 62 NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV 119
Score = 49.8 bits (119), Expect = 7e-07
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 16/83 (19%)
Query: 384 RGETALHVAAARGN---------LTLVQSLLKQG-------HPVKVQDSAGWLPLHEAAN 427
RG T LH A + + LL + + + ++ G PL AA
Sbjct: 175 RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK 234
Query: 428 HGHTDIVQALVSAGADPNDKVQD 450
G I Q ++
Sbjct: 235 TGKIGIFQHIIRREIADAAAHHH 257
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 73.5 bits (180), Expect = 1e-14
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 383 PRGETALHVAAARGN---LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS 439
ETALH+A + L +V L++ + Q G LH + + ++ L+
Sbjct: 167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226
Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475
A + + +G PL A H + L A
Sbjct: 227 GKASIE--IANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 50.0 bits (119), Expect = 5e-07
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 405 LKQGHPVKVQDSAGWLPLHEA---ANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461
L + P+ LH A + IV LV + + Q G LH
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD--KQTGKGSTALHYCC 213
Query: 462 NHGHTDIVQALVSAGAEVS 480
+ + ++ L+ A +
Sbjct: 214 LTDNAECLKLLLRGKASIE 232
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 70.0 bits (171), Expect = 2e-13
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 385 GETALHVAAARGN---LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG 441
E LH+A N L LV +++ G + + + G LH AA + D ++ L+
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475
A + AG L A H + + L A
Sbjct: 250 ALVG--TVNEAGETALDIARKKHHKECEELLEQA 281
Score = 52.7 bits (126), Expect = 8e-08
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 11/100 (11%)
Query: 390 HVAAARGNLTLVQSLLKQG------HPVKVQDSAGWLPLHEA---ANHGHTDIVQALVSA 440
A +L V G P + L LH A AN +V ++
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
G + + + G LH AA + D ++ L+ A V
Sbjct: 216 GGHLD--AKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Score = 50.0 bits (119), Expect = 7e-07
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 383 PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
G TALH AA ++ LLK V + AG L A H + + L A A
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283
Query: 443 D 443
Sbjct: 284 G 284
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 69.2 bits (169), Expect = 3e-13
Identities = 35/238 (14%), Positives = 79/238 (33%), Gaps = 20/238 (8%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
AS Y A +K+ KQ A D + + E + R+ A K + G + + ++ E
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95
Query: 95 VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS----DLCKD 150
VQ EKA + +N + KL + D L A + + +
Sbjct: 96 VQY-IEKASVMYVENGTPDTAAMALDRAGKLMEPLD-LSKAVHLYQQAAAVFENEERLRQ 153
Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFE 208
A ++ ++++ A KE ++ N+P K + + +
Sbjct: 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD-YV 212
Query: 209 LVVSTHEKALDLARQNKDD--KLIRTVMRSMK-------KLYKKHDKFTELEQIKTEL 257
++ + + + + ++++ + T ++ +L
Sbjct: 213 AAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCRSPLVTYMDNDYAKL 270
Score = 68.4 bits (167), Expect = 7e-13
Identities = 25/177 (14%), Positives = 50/177 (28%), Gaps = 8/177 (4%)
Query: 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEK 90
A + KD ++ AV Y K ++ A L G L E +
Sbjct: 72 LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLD- 130
Query: 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLS----SD 146
+++A + + + ++ +L + D A + L S +
Sbjct: 131 -LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189
Query: 147 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ 203
I+ Y A + + + E L ++ Y+ Q
Sbjct: 190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQ 246
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 69.0 bits (168), Expect = 7e-13
Identities = 36/117 (30%), Positives = 44/117 (37%), Gaps = 3/117 (2%)
Query: 359 NADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAG 418
L + A T L A A +L + LL+ G V DSAG
Sbjct: 210 PPSLPTMADALAHGADVNWVN-GGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAG 268
Query: 419 WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475
PLH A GHT + + GAD +DS G PL A + DIV L A
Sbjct: 269 RGPLHHATILGHTGLACLFLKRGADLG--ARDSEGRDPLTIAMETANADIVTLLRLA 323
Score = 52.1 bits (124), Expect = 2e-07
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 4/114 (3%)
Query: 369 SATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSA--GWLPLHEAA 426
+ E P+ L G + +L + L G V + PL +A
Sbjct: 184 RSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQAT 243
Query: 427 NHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
+ L+ GA+ N DSAG PLH A GHT + + GA++
Sbjct: 244 AANSLLACEFLLQNGANVN--QADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Score = 45.9 bits (108), Expect = 2e-05
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 356 SLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD 415
SLL + L+ A + + G LH A G+ L LK+G + +D
Sbjct: 247 SLLACEFLLQN--GANVNQADS------AGRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 416 SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAG 453
S G PL A + DIV L A + Q AG
Sbjct: 299 SEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG 336
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 68.7 bits (168), Expect = 8e-13
Identities = 32/238 (13%), Positives = 75/238 (31%), Gaps = 47/238 (19%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF---PEAVKTLGEIGDLYELQEK 90
+ A + ++++Y KQ ++DY + ++ + ++ + ++
Sbjct: 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ 199
Query: 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
+E S +KA +A K +L+
Sbjct: 200 -YEDAISHFQKAYSMAEAEKQPQLM----------------------------------- 223
Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRL--HARNFPEAVKTLGEIGDLYELQEKPFE 208
++ QY A+ YF + + + + P + I ++ K +
Sbjct: 224 -GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK-ID 281
Query: 209 LVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266
H K + +++ D + + +K LY + E I+ LE K+
Sbjct: 282 KAHEYHSKGMAYSQKAG-DVIYLSEFEFLKSLYLSGP---DEEAIQGFFDFLESKMLY 335
Score = 68.7 bits (168), Expect = 1e-12
Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 12/172 (6%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRL--HARNFPEAVKTLGEIGDLYELQEKS 91
+ + ++ QY A+ YF + + + + P + I ++ K
Sbjct: 221 QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK- 279
Query: 92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151
+ H K + +++ D + + +K LY + ++ + S L DL
Sbjct: 280 IDKAHEYHSKGMAYSQKAGD-VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADL 338
Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ 203
I +A+ Y + K + A YF K + + + LYE++
Sbjct: 339 EDFAIDVAKYYHERKNFQKASAYFLKVE--------QVRQLIQGGVSLYEIE 382
Score = 64.5 bits (157), Expect = 2e-11
Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 15/201 (7%)
Query: 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQ 88
L C+ A + D KQY A+ +F K + +TL IG Q
Sbjct: 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237
Query: 89 EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACS------ELHTV 142
+ +E ++A+ + ++ + I +++ K +D A
Sbjct: 238 SQ-YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296
Query: 143 LSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL 202
+ SL + D + D+ + + + ++ Y
Sbjct: 297 AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-----MLYADLEDFAIDVAKYYHE 351
Query: 203 QEKPFELVVSTHEKALDLARQ 223
++ F+ + K + +
Sbjct: 352 RKN-FQKASAYFLKVEQVRQL 371
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 67.9 bits (166), Expect = 1e-12
Identities = 27/169 (15%), Positives = 64/169 (37%), Gaps = 11/169 (6%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA-VKTLGEIGDLYELQEKSF 92
+ +A +++A +Y + +AV++F K ++ P+ K L + +
Sbjct: 219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ-T 277
Query: 93 EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA 152
+ E+ LD K + + ++ +YK+ + L +L +
Sbjct: 278 QKAFQFIEEGLDHITAR-SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIE 336
Query: 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE 201
+C S A ++ + + A ++ K L +A + + + LY
Sbjct: 337 ACARSAAAVFESSCHFEQAAAFYRKVL--------KAQEDILKGECLYA 377
Score = 67.9 bits (166), Expect = 2e-12
Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 19/225 (8%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRL---HARNFPEAVKTLGEIGDLYELQEKS 91
+ A + +A+ Y KQ ++++ + + L + H +++L I Y+ +
Sbjct: 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH- 197
Query: 92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLS---SDLC 148
++ E AL+LA ++D+ I + +I Y + + A +
Sbjct: 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257
Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKEL----RLHARNFPEAVKTLGEIGDLYELQE 204
L L+ T Q A + + L + + E L + +
Sbjct: 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317
Query: 205 KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE 249
K L + I RS +++ F +
Sbjct: 318 K--------IHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQ 354
Score = 64.8 bits (158), Expect = 2e-11
Identities = 32/198 (16%), Positives = 62/198 (31%), Gaps = 16/198 (8%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKS 91
+A Y D K Y+ A+ + L L N +L I + Y+
Sbjct: 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD- 237
Query: 92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACS------ELHTVLSS 145
++ +KA ++R+ D L + + + K A + T S
Sbjct: 238 DQMAVEHFQKAAKVSREKVPDLLPKV-LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296
Query: 146 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 205
K+L ++ + D ++ + + YF K+ ++E
Sbjct: 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-----NLHAYIEACARSAAAVFESSCH 351
Query: 206 PFELVVSTHEKALDLARQ 223
FE + + K L
Sbjct: 352 -FEQAAAFYRKVLKAQED 368
Score = 64.1 bits (156), Expect = 2e-11
Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 14/232 (6%)
Query: 40 YISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQS 97
D K+Y A+ Y+ + + + E + ++ + Y +++ +
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163
Query: 98 THEKALDLARQNKDDKL-IRTVMRSIKKLYKKHDNLDSACSELHTVL----SSDLCKDLA 152
+ALD+ + + + + I Y + D A L L + +A
Sbjct: 164 -ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222
Query: 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA-VKTLGEIGDLYELQEKPFELVV 211
+++A +Y + +AV++F K ++ P+ K L + + +
Sbjct: 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ-TQKAF 281
Query: 212 STHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK 263
E+ LD K + + ++ +YK+ + +I L E+K
Sbjct: 282 QFIEEGLDHITAR-SHKFYKELFLFLQAVYKETV---DERKIHDLLSYFEKK 329
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 67.7 bits (166), Expect = 2e-12
Identities = 33/243 (13%), Positives = 74/243 (30%), Gaps = 31/243 (12%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKS 91
A +L T K +++ A + L + + L +G++Y + K
Sbjct: 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKH 182
Query: 92 FEIVQST----------------HEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSA 135
+++ L L R D ++ Y + +A
Sbjct: 183 LGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA 242
Query: 136 CSELHTVLSSDLCKDL------ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NF 186
L + ++ +L ++ Q+ A +++ + L L
Sbjct: 243 IEHHQERL--RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300
Query: 187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK 246
EA ++ +G+ Y L + F + H + L +A++ D S+ +
Sbjct: 301 VEA-QSCYSLGNTYTLLHE-FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358
Query: 247 FTE 249
Sbjct: 359 HER 361
Score = 61.9 bits (151), Expect = 1e-10
Identities = 37/214 (17%), Positives = 72/214 (33%), Gaps = 31/214 (14%)
Query: 35 DLASCYISLAQTYKDNKQYNL-----------------AVDYFNKELRLHAR--NFPEAV 75
+L Y ++ AV+++ + L+L +
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223
Query: 76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSA 135
+ G +G+ Y L F+ H++ L +AR+ D R ++ + + A
Sbjct: 224 RACGNLGNTYYLLGD-FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282
Query: 136 CSELHTVLSSDLCKDL------ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFP 187
L L +L A SL TY ++N A++Y N+ L + +
Sbjct: 283 AEHYKRTL--ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340
Query: 188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA 221
+ +G+ + E + E+ L LA
Sbjct: 341 GEARACWSLGNAHSAIGG-HERALKYAEQHLQLA 373
Score = 61.5 bits (150), Expect = 2e-10
Identities = 35/239 (14%), Positives = 74/239 (30%), Gaps = 25/239 (10%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFE 93
+ + + V +F ++ + ++G+ Y +
Sbjct: 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD-YN 103
Query: 94 IVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSA--CSELHTVLSSDL--CK 149
H+ L LA+ D ++ K D A C E H L+ L
Sbjct: 104 KAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL 163
Query: 150 DLASCYISLAQTYKDNKQYNL-----------------AVDYFNKELRLHAR--NFPEAV 190
+L Y ++ AV+++ + L+L +
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223
Query: 191 KTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE 249
+ G +G+ Y L F+ + H++ L +AR+ D R ++ + +F +
Sbjct: 224 RACGNLGNTYYLLGD-FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 65.0 bits (159), Expect = 2e-12
Identities = 27/201 (13%), Positives = 65/201 (32%), Gaps = 11/201 (5%)
Query: 56 AVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113
A DY E + A + A +G +Y ++ F+ +++ + A+++ D
Sbjct: 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDR-FDEARASFQALQQQAQKSGDHT 63
Query: 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLS-----SDLCKDLASCYISLAQTYKDNKQY 168
+ + + + N D+A + ++ +A
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123
Query: 169 NLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD 226
A + K L + + +GDL + ++ +A D+ + +D
Sbjct: 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN-LLEAQQHWLRARDIFAELED 182
Query: 227 DKLIRTVMRSMKKLYKKHDKF 247
+ + +M + L H
Sbjct: 183 SEAVNELMTRLNGLEHHHHHH 203
Score = 53.8 bits (130), Expect = 1e-08
Identities = 21/160 (13%), Positives = 40/160 (25%), Gaps = 12/160 (7%)
Query: 99 HEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL------A 152
+ +Y D D A + + +
Sbjct: 9 ALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ--QQAQKSGDHTAEH 66
Query: 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKPFEL 209
+ + ++ A F +E L A + A E+ +
Sbjct: 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAG 125
Query: 210 VVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE 249
+EK+L A+Q D I R + L ++ E
Sbjct: 126 ARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLE 165
Score = 45.0 bits (107), Expect = 1e-05
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 3/99 (3%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKSF 92
++ +A A + K L + + +GDL + ++
Sbjct: 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN-L 163
Query: 93 EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDN 131
Q +A D+ + +D + + +M + L H +
Sbjct: 164 LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.4 bits (164), Expect = 6e-12
Identities = 78/493 (15%), Positives = 152/493 (30%), Gaps = 165/493 (33%)
Query: 22 TELHTVLSS---------DLCKDLASCYI----------------SLAQTYKDNK----- 51
++H + + K+L YI +L + +
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 52 ----QYNLAVDYFNKELR-LHARNFPEAVKTLGEI--GDLYELQEKSFEIVQSTHEKALD 104
Q N DYF +ELR L+ + V L + L EL + + + + L+
Sbjct: 159 IFGGQGN-TDDYF-EELRDLYQT-YHVLVGDLIKFSAETLSELIRTTLD-AEKVFTQGLN 214
Query: 105 LAR--QNKDDK--------------LIRTV-----MRSIKKLYKKHDNLDSACSELHTVL 143
+ +N + LI + + + K L L S T
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-TGH 273
Query: 144 SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ 203
S L + + I+ +++ F + +A+ L IG
Sbjct: 274 SQGL---VTAVAIAETDSWES----------FFV-------SVRKAITVLFFIG--VRCY 311
Query: 204 EK-PFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE 262
E P S L+ + +N + + + M S+ L ++ +++
Sbjct: 312 EAYP---NTSLPPSILEDSLENNEG--VPSPMLSISNLTQEQ---------------VQD 351
Query: 263 KLD-LNSSSDEEDTI---LEDSPNIGDDINL------EELSDLNSADEESK----EDQDK 308
++ NS + L + NL + L LN ++K DQ +
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAK-----NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 309 RTNRKRAPR-------------SHFLIKRNDK-DSNLNLYNIESITISRNRLG------- 347
+R + SH L+ +D + +L N+ + +
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS---FNAKDIQIPVYDTF 463
Query: 348 -AQEVRKLLSLLNADLL-----VHLNLSATLETPTTSLLE-KPRGETALHVAAARGNLTL 400
++R L ++ ++ + + T + T +L+ P G + L G LT
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL------GVLT- 516
Query: 401 VQSLLKQGHPVKV 413
K G V+V
Sbjct: 517 --HRNKDGTGVRV 527
Score = 44.7 bits (105), Expect = 6e-05
Identities = 50/319 (15%), Positives = 84/319 (26%), Gaps = 117/319 (36%)
Query: 244 HDKFTELEQIKTE-LKSLEEKLDLNSSSDEEDTILE-------------DSPNIGDDINL 289
F Q++ + K L E + ++ DE T E + +G +
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 290 EELS------------DLNS------ADEESKEDQDKR-----------TNR--KRAPRS 318
L D+++ + ++ + K R + S
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 319 HFLIKRNDKDSNLNLYNIESITISRNRLGAQ--------EVRKL--------LSLLN--A 360
R + N L I G Q E+R L L+ A
Sbjct: 144 ALF--RAVGEGNAQLVAI---------FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 361 DLLVHL---------------NLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLL 405
+ L L N+ LE P+ P + L + + + ++Q L
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSN----TPDKDYLLSIPISCPLIGVIQ--L 246
Query: 406 KQGHPVKVQDSAGWLP------LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHE 459
H V G+ P L A H +V A+ A D W
Sbjct: 247 --AHYVVTAKLLGFTPGELRSYLKGATGHSQ-GLVTAVAIAETD---------SWESFFV 294
Query: 460 AANHGHTDIVQALVSAGAE 478
+ + L G
Sbjct: 295 SV----RKAITVLFFIGVR 309
Score = 41.6 bits (97), Expect = 7e-04
Identities = 45/291 (15%), Positives = 77/291 (26%), Gaps = 105/291 (36%)
Query: 237 M-KKLYKKHDKFTEL-EQIKTELKSLEEKLDLNSSSD------EEDTILEDSPNIGDDIN 288
M LYK ++ + ++ S D TI G I
Sbjct: 1631 MGMDLYKTSKAAQDVWNRAD---NHFKDTYGF-SILDIVINNPVNLTIHFGGEK-GKRIR 1685
Query: 289 -------LEELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITI 341
E + D E+ ++ ++ + R++K L+ T
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTS--------YTFRSEKGL-LSA------T- 1729
Query: 342 SRNRLGAQ------EV---RKLLS--LLNADLLV--HLNLSATLETPTTSLLEKPRGE-T 387
+ Q E L S L+ AD H SL GE
Sbjct: 1730 -QF---TQPALTLMEKAAFEDLKSKGLIPADATFAGH------------SL-----GEYA 1768
Query: 388 AL-------------HVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIV 434
AL V RG +Q + + + + A + +
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGM--TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 435 QALVSAGADPNDKVQDSAGWLPLHEAANH----------GHTDIVQALVSA 475
Q +V ++V GWL + E N+ G + + +
Sbjct: 1827 QYVV-------ERVGKRTGWL-V-EIVNYNVENQQYVAAGDLRALDTVTNV 1868
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 65.0 bits (159), Expect = 2e-11
Identities = 40/250 (16%), Positives = 77/250 (30%), Gaps = 43/250 (17%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKSF 92
+ +L T+ + AV + L + + + +G+ Y + F
Sbjct: 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-F 243
Query: 93 EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA 152
E ++K L LARQ KD + A
Sbjct: 244 ETASEYYKKTLLLARQLKDRAVE------------------------------------A 267
Query: 153 SCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKPFELV 210
SL TY + Y A+DY K + + + +G+ Y +
Sbjct: 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN-HDQA 326
Query: 211 VSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH-DKFTELEQIKTELKSLEEKLDLNSS 269
+ EK L+++R+ D T ++ L ++ I +E ++ L+
Sbjct: 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRP 386
Query: 270 SDEEDTILED 279
+E+
Sbjct: 387 KLGRRHSMEN 396
Score = 57.3 bits (139), Expect = 5e-09
Identities = 38/244 (15%), Positives = 71/244 (29%), Gaps = 32/244 (13%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFE 93
+ + + V +F +++ + ++G+ Y +
Sbjct: 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD-YA 64
Query: 94 IVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL-- 151
H L LAR D ++ K N D A L D+ ++L
Sbjct: 65 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL--DISRELND 122
Query: 152 ----ASCYISLAQTYKD--------------------NKQYNLAVDYFNKELRLHAR--N 185
A +L Y AVD++ + L L +
Sbjct: 123 KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGD 182
Query: 186 FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD 245
+ G +G+ + L F V HE+ L +A++ D R ++ Y
Sbjct: 183 RAAQGRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241
Query: 246 KFTE 249
+F
Sbjct: 242 EFET 245
Score = 44.6 bits (106), Expect = 5e-05
Identities = 25/173 (14%), Positives = 46/173 (26%), Gaps = 33/173 (19%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKSF 92
A SL TY + Y A+DY K + + + +G+ Y
Sbjct: 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN-H 323
Query: 93 EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA 152
+ EK L+++R+ D T +L+
Sbjct: 324 DQAMHFAEKHLEISREVGDKSGELTARL-----------------------------NLS 354
Query: 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 205
+ L +Y N + L ++ + + EK
Sbjct: 355 DLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRR-HSMENMELMKLTPEK 406
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 64.2 bits (157), Expect = 2e-11
Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 30/221 (13%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKS 91
K L++ Y L Y Y A++Y + +L L + K G +G+ ++
Sbjct: 40 KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN- 98
Query: 92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-- 149
F+ ++ LD++R+ D + ++ +Y T + +
Sbjct: 99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158
Query: 150 ----------------------DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--N 185
+ +L T+ + AV + L + +
Sbjct: 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218
Query: 186 FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD 226
+ +G+ Y + FE ++K L LARQ KD
Sbjct: 219 KAAERRAYSNLGNAYIFLGE-FETASEYYKKTLLLARQLKD 258
Score = 63.8 bits (156), Expect = 2e-11
Identities = 39/245 (15%), Positives = 78/245 (31%), Gaps = 32/245 (13%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKS 91
A +L T K ++ A+ + ++ + + L +G++Y + KS
Sbjct: 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 139
Query: 92 FEIVQST-------------------HEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNL 132
F +E+ L L D ++ + N
Sbjct: 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 199
Query: 133 DSACSELHTVLSSDLCKDL------ASCYISLAQTYKDNKQYNLAVDYFNKELRLH--AR 184
A L + K+ Y +L Y ++ A +Y+ K L L +
Sbjct: 200 RDAVIAHEQRL--LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257
Query: 185 NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH 244
+ ++ +G+ Y L + +E + H K L +A++ KD S+ Y
Sbjct: 258 DRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316
Query: 245 DKFTE 249
+
Sbjct: 317 GNHDQ 321
Score = 62.3 bits (152), Expect = 9e-11
Identities = 37/203 (18%), Positives = 68/203 (33%), Gaps = 14/203 (6%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKS 91
+ AVD + + L L + + G +G+ + L
Sbjct: 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN- 198
Query: 92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151
F HE+ L +A++ D R ++ Y ++A L L + L
Sbjct: 199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL--LLARQL 256
Query: 152 ------ASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQ 203
A SL TY + Y A+DY K + ++ + +G+ Y
Sbjct: 257 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316
Query: 204 EKPFELVVSTHEKALDLARQNKD 226
+ + EK L+++R+ D
Sbjct: 317 GN-HDQAMHFAEKHLEISREVGD 338
Score = 42.2 bits (100), Expect = 3e-04
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVV 211
+ + V +F +++ + ++G+ Y + +
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD-YAKAL 63
Query: 212 STHEKALDLARQNKDDKLI 230
H L LAR D
Sbjct: 64 EYHHHDLTLARTIGDQLGE 82
Score = 41.5 bits (98), Expect = 3e-04
Identities = 24/175 (13%), Positives = 49/175 (28%), Gaps = 28/175 (16%)
Query: 77 TLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSAC 136
L G+ S E A+ + ++ + + + Y + A
Sbjct: 7 ELALEGERLCKSGD-CRAGVSFFEAAVQVGTEDLKT--LSAIYSQLGNAYFYLHDYAKAL 63
Query: 137 SELHTVL----SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAV 190
H L + A +L T K ++ A+ + ++ +
Sbjct: 64 EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123
Query: 191 KTLGEIGDLYELQEKPFELV-------------------VSTHEKALDLARQNKD 226
+ L +G++Y + K F V +E+ L L D
Sbjct: 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD 178
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 63.3 bits (154), Expect = 7e-11
Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 9/167 (5%)
Query: 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
L + Y+ L + LA +Y L L E+G + +
Sbjct: 435 RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF----QYDPLLLNELGVVAFNKSD 490
Query: 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIK-KLYKKHDNLDSACSELHTVLSSDLCK 149
+ + AL L ++ + ++ + Y+K D+A L+ L L
Sbjct: 491 MQTAINH-FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL--LLST 547
Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196
+ A+ + ++A Y K LA+ + ++ L + N A L
Sbjct: 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRA 593
Score = 43.7 bits (103), Expect = 1e-04
Identities = 36/240 (15%), Positives = 64/240 (26%), Gaps = 36/240 (15%)
Query: 42 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEK 101
+QY A K L + P L ++ + + +
Sbjct: 89 LWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQV--YCCTGD---------YAR 135
Query: 102 ALDLARQNKDDKLIRTV----MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL------ 151
A L + + KLY L+ L
Sbjct: 136 AKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195
Query: 152 ----ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPF 207
AS Q Y + ++ A + + + L + EA L L +E
Sbjct: 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDL 254
Query: 208 ELVVSTHEKALDLARQNK-DDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266
L L+ + +K D +R++ D+ E + + LE+ DL
Sbjct: 255 VL-------KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDL 307
Score = 43.3 bits (102), Expect = 1e-04
Identities = 26/198 (13%), Positives = 56/198 (28%), Gaps = 52/198 (26%)
Query: 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
D + A ++++ Y + + A YF+K + F A E
Sbjct: 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHS--FAIEGE- 422
Query: 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
H++A+ Y ++ L +
Sbjct: 423 --------HDQAI--------------------SAYTT---------------AARLFQG 439
Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELV 210
Y+ L + LA +Y L L E+G + + +
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALF----QYDPLLLNELGVVAFNKSD-MQTA 494
Query: 211 VSTHEKALDLARQNKDDK 228
++ + AL L ++ + ++
Sbjct: 495 INHFQNALLLVKKTQSNE 512
Score = 36.4 bits (84), Expect = 0.022
Identities = 19/156 (12%), Positives = 41/156 (26%), Gaps = 48/156 (30%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFE 93
+ + + A T ++ + K L + + L+E EK
Sbjct: 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLAS--LHESGEK--- 355
Query: 94 IVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLAS 153
K ++ + L+ D + A
Sbjct: 356 ------NKLYLIS-----NDLV------------------------------DRHPEKAV 374
Query: 154 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA 189
++++ Y + + A YF+K + F A
Sbjct: 375 TWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPA 409
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 62.2 bits (151), Expect = 2e-10
Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 362 LLVHLNLSATLETPTTSLLEKPRGETALHVAAA---RGNLTLVQSLLKQGHPVKVQDSAG 418
+L P + E LH+A + +L LV +++ G + + + G
Sbjct: 148 VLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG 207
Query: 419 WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475
LH AA + D ++ L+ A + AG L A H + + L A
Sbjct: 208 NTALHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALDIARKKHHKECEELLEQA 262
Score = 45.7 bits (108), Expect = 2e-05
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 389 LHVAAARGNLTLVQSLLKQGH------PVKVQDSAGWLPLHEA---ANHGHTDIVQALVS 439
L A +L V G P + L LH A AN +V ++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
G + + + G LH AA + D ++ L+ A V
Sbjct: 196 NGGHLD--AKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Score = 40.3 bits (94), Expect = 0.001
Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 8/88 (9%)
Query: 356 SLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD 415
SL D ++ + G TALH AA ++ LLK V +
Sbjct: 186 SLPLVDFIIQNGGHLDAKAA--------DGNTALHYAALYNQPDCLKLLLKGRALVGTVN 237
Query: 416 SAGWLPLHEAANHGHTDIVQALVSAGAD 443
AG L A H + + L A A
Sbjct: 238 EAGETALDIARKKHHKECEELLEQAQAG 265
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 60.4 bits (146), Expect = 3e-10
Identities = 37/208 (17%), Positives = 68/208 (32%), Gaps = 13/208 (6%)
Query: 267 NSSSDEEDTILEDSPNIGDDINLEELSD----LNSADEESKEDQDKRTNRKRAPRSHFLI 322
N+ +D+ D D+ + LS + + D +++ + +
Sbjct: 14 NNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFP 73
Query: 323 KRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEK 382
+ + ++LN + + + Q+ SLL N L P
Sbjct: 74 EIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPV-----D 128
Query: 383 PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGH---TDIVQALVS 439
G T LH + NL LV+ L+K G D+ G L +A + + +AL+
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188
Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTD 467
++DS LH
Sbjct: 189 YLYPCLI-LEDSMNRTILHHIIITSGMT 215
Score = 58.5 bits (141), Expect = 1e-09
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 2/116 (1%)
Query: 346 LGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLL 405
+ D+L+ + + EK + L +
Sbjct: 211 TSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKW 270
Query: 406 KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461
+ + QDS G L+ AA G+ IV AL+ GADP + + +G P+ A
Sbjct: 271 IIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF--IANKSGLRPVDFGA 324
Score = 57.7 bits (139), Expect = 3e-09
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 14/109 (12%)
Query: 385 GETALHVAAARGNLT------------LVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTD 432
T LH +T L+ ++K+ + + N D
Sbjct: 201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD 260
Query: 433 IVQALVSAGADPNDKV--QDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
+ + + + QDS G L+ AA G+ IV AL+ GA+
Sbjct: 261 SILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 309
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 59.2 bits (144), Expect = 7e-10
Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 14/180 (7%)
Query: 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS 91
L K + + Y LA +F++ L + P + E+G + +
Sbjct: 154 LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFV---MHEVGVVAFQNGEW 209
Query: 92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKL---YKKHDNLDSACSELHTVLSSDLC 148
+ AL+ + ++ + + L +K A L L
Sbjct: 210 KTAEKW-FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL--VLI 266
Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE 208
AS Y ++ + + AVDYF+ L L R+ +V LG E+ E
Sbjct: 267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHC---IEMYIGDSE 322
Score = 51.5 bits (124), Expect = 3e-07
Identities = 35/222 (15%), Positives = 70/222 (31%), Gaps = 23/222 (10%)
Query: 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS 91
L K +I+ ++ +++ A+ + +L + IG Y L S
Sbjct: 120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL----MKGCHLPMLYIGLEYGLTNNS 175
Query: 92 FEIVQSTHEKALDLARQNKDDKLIR----TVMRSIKKLYKKHDNLDSACSELHTVLSSDL 147
+ +AL + +D + V + A ++ + +
Sbjct: 176 KLAERF-FSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231
Query: 148 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPF 207
+L + K+Y A+DY + L L P+ T IG ++ L
Sbjct: 232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI----PQNASTYSAIGYIHSLMGNFE 287
Query: 208 ELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE 249
V H AL L R + + + + + +E
Sbjct: 288 NAVDYFH-TALGLRRDDTF------SVTMLGHCIEMYIGDSE 322
Score = 36.5 bits (85), Expect = 0.014
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Query: 15 DSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA 74
A ++ + + +L + K+Y A+DY + L L P+
Sbjct: 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI----PQN 269
Query: 75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD 111
T IG ++ L V H AL L R +
Sbjct: 270 ASTYSAIGYIHSLMGNFENAVDYFH-TALGLRRDDTF 305
Score = 36.5 bits (85), Expect = 0.015
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
L AS Y ++ + + AVDYF+ L L R+ +V LG E+
Sbjct: 264 VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHC---IEMYIG 319
Query: 91 SFE 93
E
Sbjct: 320 DSE 322
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 56.0 bits (136), Expect = 1e-09
Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 42/197 (21%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKS 91
+ +L T+ + AV + L + + +G+ Y +
Sbjct: 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE- 64
Query: 92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151
FE ++K L LARQ KD +
Sbjct: 65 FETASEYYKKTLLLARQLKDRAVE------------------------------------ 88
Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFEL 209
A SL TY + Y A+DY K L + + + +G+ Y +
Sbjct: 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-HDQ 147
Query: 210 VVSTHEKALDLARQNKD 226
+ EK L+++R+ D
Sbjct: 148 AMHFAEKHLEISREVGD 164
Score = 43.3 bits (103), Expect = 3e-05
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKPFEL 209
Y +L Y ++ A +Y+ K L L ++ ++ +G+ Y L + +E
Sbjct: 49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEK 107
Query: 210 VVSTHEKALDLARQNKDDKLIRTVMRSMKKLYK---KHDK 246
+ H K L +A++ KD S+ Y HD+
Sbjct: 108 AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 147
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 58.8 bits (142), Expect = 2e-09
Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 20/164 (12%)
Query: 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS 91
+L LA + QY A YF KE G+ Q K
Sbjct: 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKC 387
Query: 92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151
+ + + + N+ + + ++K+ K + + A SE
Sbjct: 388 EDKAIHHFIEGVKI---NQKSREKEKMKDKLQKIAKMRLSKNGADSE------------- 431
Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195
LA + N++ A + + L P A GE
Sbjct: 432 --ALHVLAFLQELNEKMQQADEDSERGLES-GSLIPSASSWNGE 472
Score = 46.9 bits (111), Expect = 9e-06
Identities = 35/230 (15%), Positives = 69/230 (30%), Gaps = 19/230 (8%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ 96
C + Q A F K L PE L + S +
Sbjct: 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAID 196
Query: 97 STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI 156
+A+ L N+ K++ + + K+ ++ + + L +
Sbjct: 197 P-LRQAIRLNPDNQYLKVLLAL--KLHKMREEGEEEGEGEKLVEEALE--KAPGVTDVLR 251
Query: 157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEK 216
S A+ Y+ + + A++ K L P +IG Y + + +
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEYI----PNNAYLHCQIGCCYRAKVFQVM-----NLR 302
Query: 217 ALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE----LEQIKTELKSLEE 262
+ + K +LI + +KK + +D L + EE
Sbjct: 303 ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 53.6 bits (129), Expect = 2e-08
Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 14/165 (8%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ 96
+ LA YK N+ Y+ A ++ + L+ P V L ++ + + + ++
Sbjct: 54 SKLATELALAYKKNRNYDKAYLFYKELLQKA----PNNVDCLEACAEMQVCRGQEKDALR 109
Query: 97 STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI 156
+EK L L D+ + + Y + + LSS +
Sbjct: 110 -MYEKILQL---EADNLAANIFLGNY--YYLTAEQEKKKLETDYKKLSSP--TKMQYARY 161
Query: 157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE 201
+ +Y A + K + EA KTL +I + +
Sbjct: 162 RDGLSKLFTTRYEKARNSLQKVILRFPST--EAQKTLDKILRIEK 204
Score = 46.7 bits (111), Expect = 5e-06
Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 35/181 (19%)
Query: 40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTH 99
+ + Q AV YF + + L+
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDR----------------------------- 37
Query: 100 EKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA 159
+ +K+ ++ + + YKK+ N D A +L + C + A
Sbjct: 38 TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACA 95
Query: 160 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD 219
+ Q A+ + K L+L + + +G+ Y L + + + T K L
Sbjct: 96 EMQVCRGQEKDALRMYEKILQLE----ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151
Query: 220 L 220
Sbjct: 152 S 152
Score = 31.3 bits (71), Expect = 0.51
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE 86
+ + +Y A + K + EA KTL +I + +
Sbjct: 155 KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST--EAQKTLDKILRIEK 204
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 54.6 bits (131), Expect = 2e-08
Identities = 41/255 (16%), Positives = 81/255 (31%), Gaps = 28/255 (10%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEI 94
A + A Y+ K+ NLA D F K A N EA T E ++ S
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 95 VQSTHEKALDLARQNKDDKLIRTVMRSI-KKLYKKHDNLDSACSELHTVLS----SDLCK 149
V S E A+ + + + + L + A
Sbjct: 97 VDS-LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155
Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF---PEAVKTLGEIGDLYELQEKP 206
C+I A + QY A D ++K ++ N + G
Sbjct: 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215
Query: 207 FELVVSTHEKALDLAR---QNKDDKLIRTVMRSMK--------KLYKKHDKFTELEQIKT 255
T ++ +++ +++++ ++ + K+ D F L++ K
Sbjct: 216 -VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274
Query: 256 EL-----KSLEEKLD 265
+ +S++++ D
Sbjct: 275 TILNKIKESIQQQED 289
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 54.0 bits (129), Expect = 3e-08
Identities = 26/218 (11%), Positives = 64/218 (29%), Gaps = 8/218 (3%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF-PEAVKTLGEIGDLYELQEKSFE 93
+ + K+Y + EL+ + + Y L++ +E
Sbjct: 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYE 132
Query: 94 IVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLS-----SDLC 148
+K L+ D + +I +Y ++ L +L D
Sbjct: 133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192
Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKP 206
+ + A+ + +Y ++ NK E+ + + + G+ E
Sbjct: 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE 252
Query: 207 FELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH 244
+ ++KA + ++ + +L H
Sbjct: 253 EAEIEDAYKKASFFFDILEMHAYKEALVNKISRLEHHH 290
Score = 42.5 bits (99), Expect = 2e-04
Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
+ A+ + +Y ++ NK E+ + + + G+ E
Sbjct: 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255
Query: 95 VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDN 131
++ ++KA + ++ I +L H +
Sbjct: 256 IEDAYKKASFFFDILEMHAYKEALVNKISRLEHHHHH 292
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 5e-08
Identities = 82/500 (16%), Positives = 172/500 (34%), Gaps = 130/500 (26%)
Query: 26 TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY 85
T ++ D+C YK + + + + L L N PE V L + L
Sbjct: 164 TWVALDVCLS-----------YKVQCKMDFKIFW----LNLKNCNSPETV--LEMLQKLL 206
Query: 86 ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDN----LDSACSELHT 141
+ ++ +S H + L + +L R + K ++N L + +
Sbjct: 207 YQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKS------KPYENCLLVLLNVQNA--K 257
Query: 142 VLSS-DL-CKDLA-SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD 198
++ +L CK L + + + ++++D+ + L T E+
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL------------TPDEVKS 305
Query: 199 LYE--LQEKPFEL---VVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK--HDKFTELE 251
L L +P +L V++T+ + L + ++ D L +K DK T +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW------DNWKHVNCDKLTTI- 358
Query: 252 QIKTELKSLEEKL------DLNSSSDEEDTILEDSPNIGDDINLEEL-SDLNSADEESKE 304
I++ L LE L ++ S +I + L + D+ +D
Sbjct: 359 -IESSLNVLEPAEYRKMFDRL--------SVFPPSAHIPTIL-LSLIWFDVIKSDVMVVV 408
Query: 305 DQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLV 364
++ + S L+++ K+S +++ +I + + L+ ++
Sbjct: 409 NKLHK-------YS--LVEKQPKESTISIPSI-YLELKVKLENEYA-------LHRSIVD 451
Query: 365 HLNLSATLETPTTSLLEKPRGET------ALHVAAAR--GNLTLVQSL------LKQGHP 410
H N+ T ++ P + H+ +TL + + L+Q
Sbjct: 452 HYNIPKTFDSDDLI---PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ--- 505
Query: 411 VKV-QDSAGWLPLHEAANHGHTDIVQAL-------VSAGADPNDKVQDSAGWLPLHEAA- 461
K+ DS W A+ + +Q L V +LP E
Sbjct: 506 -KIRHDSTAW-----NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 462 -NHGHTDIVQ-ALVSAGAEV 479
+TD+++ AL++ +
Sbjct: 560 ICSKYTDLLRIALMAEDEAI 579
Score = 44.5 bits (104), Expect = 8e-05
Identities = 61/403 (15%), Positives = 118/403 (29%), Gaps = 122/403 (30%)
Query: 3 FKIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFN- 61
+ + + S EL +L S K +C + L N Q A + FN
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKS---KPYENCLLVL-----LNVQNAKAWNAFNL 264
Query: 62 --KELRLHARN---------FPEAVKTLGEIGDLYELQEKSFEIV-QSTHEKALDLARQN 109
K L L R +L E ++ + + DL R+
Sbjct: 265 SCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDLPREV 322
Query: 110 KDD-----KLIRTVMRSIKKLYK--KHDNLDSACSELHTVLSSDLCKDLASCYISLAQTY 162
+I +R + KH N D +L T++ S L L + +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCD----KLTTIIESSL-NVLEPAEYR--KMF 375
Query: 163 KDNKQYNLAVDYFNKELRLHARNFPEAVK----TLG---------EIGDLYE-------L 202
L+V FP + L ++ + +
Sbjct: 376 DR-----LSV-------------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 203 QEKPFELVVSTHEKALDLARQNKDD-----KLIRT------------------------V 233
+++P E +S L+L + +++ ++ +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 234 MRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDDINLEELS 293
+K + + ++ T + + + LE+K+ D+ ++ G +N L
Sbjct: 478 GHHLKNI-EHPERMTLFRMVFLDFRFLEQKI-------RHDSTAWNAS--GSILNT--LQ 525
Query: 294 DLNSADEESKEDQDKRTNRKRAPRSHFLIKRN-----DKDSNL 331
L + D D + R FL K K ++L
Sbjct: 526 QLKFY-KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 54.0 bits (130), Expect = 6e-08
Identities = 34/189 (17%), Positives = 59/189 (31%), Gaps = 21/189 (11%)
Query: 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
L + YI LA ++ + +FN+ PE EI L + +
Sbjct: 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI--LTDRGD- 393
Query: 91 SFEIVQSTHEKALDLARQNKD----------DKLIRTVMRSIKKLYKKHDNLDSACSELH 140
F+ ++ A L + I S + ++A L
Sbjct: 394 -FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452
Query: 141 TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK--TLGEIGD 198
D I LAQ ++ + A++ F L AR E ++ T E
Sbjct: 453 KACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL-ARTMDEKLQATTFAEAAK 509
Query: 199 LYE-LQEKP 206
+ + L+ P
Sbjct: 510 IQKRLRADP 518
Score = 50.5 bits (121), Expect = 8e-07
Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 30/206 (14%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ------ 88
+ Y Q Y + Y A + F K L+ L + LY+
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACL--LYKQGKFTESE 364
Query: 89 ---EKSFEIVQSTHE----KALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHT 141
++ + E A L + D I K Y L+ ++H
Sbjct: 365 AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAI--------KQYDIAKRLEEVQEKIHV 416
Query: 142 VLSSDLCK-DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY 200
+ + K + + S T D +++N A+ K L +A L ++
Sbjct: 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQL--KL 473
Query: 201 ELQEKPFELVVSTHEKALDLARQNKD 226
++++ + + E + LAR +
Sbjct: 474 QMEK--IDEAIELFEDSAILARTMDE 497
Score = 45.5 bits (108), Expect = 3e-05
Identities = 34/240 (14%), Positives = 74/240 (30%), Gaps = 56/240 (23%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ 96
+ YI LA T D + +F K + L+ +P G +Y + +
Sbjct: 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPT---YYHRGQMYFILQD------ 325
Query: 97 STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI 156
++ A + ++K + L + YI
Sbjct: 326 --YKNAK--------------------EDFQK---------------AQSLNPENVYPYI 348
Query: 157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEK 216
LA ++ + +FN+ PE EI L + + F+ + ++
Sbjct: 349 QLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI--LTDRGD--FDTAIKQYDI 403
Query: 217 ALDLARQNKDDK----LIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDE 272
A L + + + + + + E+ +K L + +L+ S++
Sbjct: 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463
Score = 35.1 bits (81), Expect = 0.047
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK--TLGEIGDLYELQEKSF 92
I LAQ ++ + A++ F L AR E ++ T E + + ++
Sbjct: 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL-ARTMDEKLQATTFAEAA-KIQKRLRAD 517
Query: 93 EIVQSTHEKALDLARQ 108
I+ + E L R
Sbjct: 518 PIISAKMELTLARYRA 533
Score = 33.9 bits (78), Expect = 0.11
Identities = 32/288 (11%), Positives = 77/288 (26%), Gaps = 58/288 (20%)
Query: 28 LSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL 87
LS + A + + K +N A+ Y+ + L P I Y
Sbjct: 16 LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD----PNEPVFYSNISACYIS 71
Query: 88 QEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL 147
EK ++ + +++ +
Sbjct: 72 TGD--------LEKVIEFTTK------------ALE-----------------------I 88
Query: 148 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPF 207
D + + A + + A+ + L L+ +++ + E + +
Sbjct: 89 KPDHSKALLRRASANESLGNFTDAMFDLSV-LSLNGDFDGASIEPMLERNLNKQAMKVLN 147
Query: 208 ELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLN 267
E + + + N S+ + D E+ + T L+
Sbjct: 148 ENLSKDEGRGSQVLPSNT----------SLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197
Query: 268 SSSDEEDTILEDSPNIGDDINLEELSDLNSADEESKEDQDKRTNRKRA 315
+ + ++ + +D+ + +S + D R N A
Sbjct: 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA 245
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 52.7 bits (127), Expect = 7e-08
Identities = 41/230 (17%), Positives = 74/230 (32%), Gaps = 30/230 (13%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG----EIGDLYELQEK 90
+ YI L Y A K L + + +A L + +L ++
Sbjct: 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEI-DPSSADAHAALAVVFQTEME-PKLADE 92
Query: 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
+ KAL +N V+ + + + A L L +
Sbjct: 93 EY-------RKALASDSRNAR------VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE 139
Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELV 210
+ + +L K+ A +YF K LRL+ RN P + ++ LY+ +E +
Sbjct: 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADL--LYKERE--YVPA 194
Query: 211 VSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260
++ QN L+ +L K + +LK L
Sbjct: 195 RQYYDLFAQGGGQNARSLLL------GIRLAKVFEDRDTAASYGLQLKRL 238
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 51.9 bits (125), Expect = 2e-07
Identities = 37/227 (16%), Positives = 87/227 (38%), Gaps = 35/227 (15%)
Query: 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS 91
+C A A+ + + A+ +L + + EA + + Y+L +
Sbjct: 149 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTL--YYQLGD-- 203
Query: 92 FEIVQSTHEKALDLARQ----NKDDKLIRTVMRSIKKLYKKHD---------NLDSACSE 138
HE +L R+ ++D K + +KKL K + A S+
Sbjct: 204 -------HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 256
Query: 139 LHTVLS--SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196
+V+ + + + + +++ A+ ++ L++ + A+K E
Sbjct: 257 YESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEA 315
Query: 197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK 243
Y ++E ++ + +E A + N++D+ IR + ++L K+
Sbjct: 316 ---YLIEEM-YDEAIQDYEAAQEH---NENDQQIREGLEKAQRLLKQ 355
Score = 51.1 bits (123), Expect = 4e-07
Identities = 40/256 (15%), Positives = 85/256 (33%), Gaps = 21/256 (8%)
Query: 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ-- 88
D D Y A + + A+ K + L +F A G + L +
Sbjct: 31 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHL--LLKQGKL 87
Query: 89 -------EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHT 141
+K + S E+ ++ K D++ R +++ + +A + L
Sbjct: 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD--AFDGADYTAAITFLDK 145
Query: 142 VLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE 201
+L +C A A+ + + A+ +L + + EA + + Y+
Sbjct: 146 ILE--VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTL--YYQ 200
Query: 202 LQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261
L + EL +S + L L + +K ++ + KL + ++ + E
Sbjct: 201 LGD--HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 258
Query: 262 EKLDLNSSSDEEDTIL 277
+ S E
Sbjct: 259 SVMKTEPSVAEYTVRS 274
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 51.3 bits (123), Expect = 4e-07
Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 11/167 (6%)
Query: 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
+L + YI LA +++ F++ R PE EI L + +
Sbjct: 332 ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEI--LTDKND- 387
Query: 91 SFEIVQSTHEKALDLARQNKD---DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL 147
F+ ++ A++L + ++ +N A + L L
Sbjct: 388 -FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--L 444
Query: 148 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194
I LAQ + + A+ F + L AR E ++ +
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL-ARTMEEKLQAIT 490
Score = 47.0 bits (112), Expect = 9e-06
Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 19/196 (9%)
Query: 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
L + LA A + K + L P + + + +
Sbjct: 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF----PRV-NSYIYMALIMADRND 285
Query: 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
S E +KAL L N V ++ N D A + L +
Sbjct: 286 STEYYNY-FDKALKLDSNNSS------VYYHRGQMNFILQNYDQAGKDFDKAKE--LDPE 336
Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELV 210
YI LA +++ F++ R PE EI L + + F+
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEI--LTDKND--FDKA 391
Query: 211 VSTHEKALDLARQNKD 226
+ ++ A++L +
Sbjct: 392 LKQYDLAIELENKLDG 407
Score = 46.3 bits (110), Expect = 2e-05
Identities = 24/187 (12%), Positives = 56/187 (29%), Gaps = 16/187 (8%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ 96
+ YI +A D +YF+K L+L N G + + + ++
Sbjct: 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSV---YYHRGQMNFILQN-YDQAG 324
Query: 97 STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI 156
+KA +L +N + L + + D + +
Sbjct: 325 KDFDKAKELDPENIF------PYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPN 376
Query: 157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEK 216
A+ D ++ A+ ++ + L + + + + V +
Sbjct: 377 FFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPL--VGKATLLTRNPTVENFIE 433
Query: 217 ALDLARQ 223
A +L +
Sbjct: 434 ATNLLEK 440
Score = 45.5 bits (108), Expect = 3e-05
Identities = 30/205 (14%), Positives = 67/205 (32%), Gaps = 27/205 (13%)
Query: 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
L + +S Y Q + Y+ A F+K L L + Y
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACL--AYRE--N 352
Query: 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
F+ ++ +A + + V ++ ++ D A + + L
Sbjct: 353 KFDDCETLFSEAKRKFPEAPE------VPNFFAEILTDKNDFDKALKQYDLAIE--LENK 404
Query: 151 LASCYISLAQTY---------KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE 201
L Y+ +A + + A + K +L +A L ++ +
Sbjct: 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQM--KLQ 461
Query: 202 LQEKPFELVVSTHEKALDLARQNKD 226
++ + ++ E++ DLAR ++
Sbjct: 462 QED--IDEAITLFEESADLARTMEE 484
Score = 33.2 bits (76), Expect = 0.19
Identities = 30/242 (12%), Positives = 70/242 (28%), Gaps = 16/242 (6%)
Query: 33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK-- 90
K+ Y +L+ Y V+ K L L P+ K L E K
Sbjct: 35 LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK----PDYSKVLLRRASANEGLGKFA 90
Query: 91 ----SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLS-S 145
++ + + L + M +K+ + D + +EL T +
Sbjct: 91 DAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE 150
Query: 146 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 205
K ++ ++ + L +++ + Y+ ++
Sbjct: 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADE 210
Query: 206 PFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLD 265
F E+ LD K+++ + + L + +++ ++
Sbjct: 211 SFTKAARLFEEQLD-----KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265
Query: 266 LN 267
L
Sbjct: 266 LF 267
Score = 30.5 bits (69), Expect = 1.3
Identities = 29/276 (10%), Positives = 71/276 (25%), Gaps = 51/276 (18%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFE 93
A + NK+Y+ A+ Y+N L L + V + Y
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELK----EDPV-FYSNLSACYVSVGD--- 54
Query: 94 IVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLAS 153
+K ++++ K + L D +
Sbjct: 55 -----LKKVVEMS-----TKALE------------------------------LKPDYSK 74
Query: 154 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVST 213
+ A + ++ A+ + L L+ +++ + E + K +
Sbjct: 75 VLLRRASANEGLGKFADAMFDLSV-LSLNGDFNDASIEPMLERNLNKQAMSK-LKEKFGD 132
Query: 214 HEKALDLARQNKDDKLIRTVMRSMKKLYK-KHDKFTELEQIKTELKSLEEKLDLNSSSDE 272
+ A + + F + + + + +E + +
Sbjct: 133 IDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMN 192
Query: 273 EDTILEDSPNIGDDINLEELSDLNSADEESKEDQDK 308
+ L D E + EE + ++
Sbjct: 193 GLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 50.0 bits (120), Expect = 6e-07
Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 9/165 (5%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
Y + + + + LA+ Y K++R P+ LG+ Y +E +
Sbjct: 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQA--YYYNKE--YVK 160
Query: 95 VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACS---ELHTVLSSDLCKDL 151
S+ K L+L L R + + K E+ + +L
Sbjct: 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDEL 220
Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196
+A Y N+ A + L L +A+ L
Sbjct: 221 IEANEYIAYYYTINRDKVKADAAWKNILALDP-TNKKAIDGLKMK 264
Score = 47.7 bits (114), Expect = 4e-06
Identities = 28/197 (14%), Positives = 58/197 (29%), Gaps = 21/197 (10%)
Query: 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
+ K ++ + + Q +LA+ + + + G+IG + +
Sbjct: 68 NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD----TTRLDMYGQIGSYFYNKGN 123
Query: 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
+Q EK + + Y + A S VL +
Sbjct: 124 FPLAIQY-MEKQIRPTTTDPKVFYELGQ------AYYYNKEYVKADSSFVKVLELK--PN 174
Query: 151 LASCYISLAQTY---KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE----IGDLYELQ 203
+ Y+ A+ + + LA Y+ K + + A + L E I Y +
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234
Query: 204 EKPFELVVSTHEKALDL 220
+ + L L
Sbjct: 235 RD-KVKADAAWKNILAL 250
Score = 44.6 bits (106), Expect = 3e-05
Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 23/188 (12%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG----EIGDLYELQEKSF 92
A N Y A++ FNK N P E+ Y+L +K
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAK-YDLAQKDI 60
Query: 93 EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA 152
E ++ + D + K A + + D
Sbjct: 61 ETYF----SKVNATKAKSADFEYYGK------ILMKKGQDSLAIQQYQAAVDRD--TTRL 108
Query: 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVS 212
Y + + + + LA+ Y K++R P+ LG+ Y +E + S
Sbjct: 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQA--YYYNKE--YVKADS 163
Query: 213 THEKALDL 220
+ K L+L
Sbjct: 164 SFVKVLEL 171
Score = 41.1 bits (97), Expect = 4e-04
Identities = 34/196 (17%), Positives = 60/196 (30%), Gaps = 18/196 (9%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDY---FNKELRLHARNFPEAVKTLGEIGDLYELQEKS 91
+ Y A Y + +Y+LA + ++ + + G+I L + + S
Sbjct: 35 NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT-KAKSADFEYYGKI--LMKKGQDS 91
Query: 92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151
I Q ++ A+D D + I + N A + +
Sbjct: 92 LAIQQ--YQAAVDRDTTRLD------MYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTD 141
Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVV 211
+ L Q Y NK+Y A F K L L N + K L
Sbjct: 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTK-QGLAK 199
Query: 212 STHEKALDLARQNKDD 227
+EK +++
Sbjct: 200 PYYEKLIEVCAPGGAK 215
Score = 33.8 bits (78), Expect = 0.082
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 23 ELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 81
E+ + +L +A Y N+ A + L L +A+ L
Sbjct: 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP-TNKKAIDGLKMK 264
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 50.1 bits (120), Expect = 1e-06
Identities = 37/268 (13%), Positives = 86/268 (32%), Gaps = 44/268 (16%)
Query: 16 SLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNK------------- 62
+ + E S + D S A + Y A+ + +K
Sbjct: 122 KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181
Query: 63 ---ELRLHARNFPEAVKTLGE--------------IGDLYELQEKSFEIVQSTHEKALDL 105
E + +A+ L I LY E+ S + L L
Sbjct: 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD-HELSLSEVRECLKL 240
Query: 106 ARQNKDDKLIRTVMRSIKKLYKKHDNL------DSACSELHTVLS--SDLCKDLASCYIS 157
+ +K ++ + KL + + L A S+ +V+ + +
Sbjct: 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKER 300
Query: 158 LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKA 217
+ + +++ A+ ++ L++ + A+K E Y ++E ++ + +E A
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALKDRAEA---YLIEEM-YDEAIQDYETA 355
Query: 218 LDLARQNKDDKLIRTVMRSMKKLYKKHD 245
+ ++ + + + K +K D
Sbjct: 356 QEHNENDQQIREGLEKAQRLLKQSQKRD 383
Score = 44.3 bits (105), Expect = 6e-05
Identities = 41/272 (15%), Positives = 75/272 (27%), Gaps = 63/272 (23%)
Query: 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
D D Y A + + A+ K ++L +F A G + L + +
Sbjct: 54 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHL--LLKQGK- 109
Query: 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
LD A + +KK + + +E S + D
Sbjct: 110 ------------LDEAEDD----------------FKKVLKSNPSENEEKEAQSQLIKSD 141
Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNK----------------ELRLHARNFPEAVKTLG 194
S A + Y A+ + +K E + +A+ L
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 201
Query: 195 E--------------IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKL 240
I LY EL +S + L L + +K ++ + KL
Sbjct: 202 AASKLKNDNTEAFYKISTLYYQLGD-HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260
Query: 241 YKKHDKFTELEQIKTELKSLEEKLDLNSSSDE 272
+ ++ + E + S E
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAE 292
Score = 37.0 bits (86), Expect = 0.012
Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 23/174 (13%)
Query: 28 LSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL 87
+ + + + +++ A+ ++ L++ + A+K E Y +
Sbjct: 286 TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALKDRAEA---YLI 341
Query: 88 QEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL 147
+E ++ +E A + N++D+ IR + ++L K+ D ++ V +
Sbjct: 342 EEM-YDEAIQDYETAQEH---NENDQQIREGLEKAQRLLKQSQKRD--YYKILGVKRNAK 395
Query: 148 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE 201
+++ Y LA + + + K+ +A K +I E
Sbjct: 396 KQEIIKAYRKLALQWHPDN----FQNEEEKK---------KAEKKFIDIAAAKE 436
Score = 27.7 bits (62), Expect = 8.8
Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 10/152 (6%)
Query: 40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTH 99
I A+ + +Y A + ++ V++ I + EK E ++
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV-C 318
Query: 100 EKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA 159
+ L + N + ++ + Y + D A + T + ++ L
Sbjct: 319 SEVLQMEPDNVN------ALKDRAEAYLIEEMYDEAIQDYETAQEHN--ENDQQIREGLE 370
Query: 160 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVK 191
+ + KQ Y ++ +A E +K
Sbjct: 371 KAQRLLKQSQKRDYYKILGVKRNA-KKQEIIK 401
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 47.6 bits (114), Expect = 2e-06
Identities = 27/204 (13%), Positives = 54/204 (26%), Gaps = 23/204 (11%)
Query: 30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG----EIGDLY 85
++ +++ LA Y + Y A L+ A +
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS-DPKNELAWLVRAEIYQYLKV-N 58
Query: 86 ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS 145
+ ++SF +AL + + + I L + + + + L+
Sbjct: 59 DKAQESF-------RQALSIKPDSAE---INNNYGWF--LCGRLNRPAESMAYFDKALAD 106
Query: 146 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 205
++ Q+ LA Y + L FP A K L +
Sbjct: 107 PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-QPQFPPAFKELART--KMLAGQ- 162
Query: 206 PFELVVSTHEKALDLARQNKDDKL 229
+K + D L
Sbjct: 163 -LGDADYYFKKYQSRVEVLQADDL 185
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 47.1 bits (113), Expect = 6e-06
Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 17/204 (8%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF----PEAVKTLGEIGDLYELQEK 90
+A+ +LA Y +Y A + L + + P+ K L + L + Q K
Sbjct: 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 168
Query: 91 SFEIVQSTHEKALDLARQN--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC 148
+E V+ +++AL++ + DD + ++ Y K A + +L+
Sbjct: 169 -YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227
Query: 149 K-------DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA--RNFPEAVKTLGEIGDL 199
+ + ++ + + + + A + P TL +G L
Sbjct: 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGAL 287
Query: 200 YELQEKPFELVVSTHEKALDLARQ 223
Y Q K FE + E A+ +Q
Sbjct: 288 YRRQGK-FEAAETLEEAAMRSRKQ 310
Score = 41.8 bits (99), Expect = 3e-04
Identities = 35/205 (17%), Positives = 68/205 (33%), Gaps = 18/205 (8%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF----PEAVKTLGEIGDLYELQEK 90
+L Y +Y +AV + L + P+ L + +Y Q K
Sbjct: 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK 84
Query: 91 SFEIVQSTHEKALDLARQN--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC 148
++ + AL + + KD + + ++ LY K A L
Sbjct: 85 -YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143
Query: 149 K------DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF----PEAVKTLGEIGD 198
D+A +LA ++ +Y Y+ + L ++ P KT +
Sbjct: 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203
Query: 199 LYELQEKPFELVVSTHEKALDLARQ 223
Y Q K + + +++ L A +
Sbjct: 204 CYLKQGKFKQ-AETLYKEILTRAHE 227
Score = 40.6 bits (96), Expect = 6e-04
Identities = 44/232 (18%), Positives = 84/232 (36%), Gaps = 19/232 (8%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF----PEAVKTLGEIGDLYELQEK 90
D+A+ LA Y+D +Y A + N L + + P TL + LY + K
Sbjct: 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 126
Query: 91 SFEIVQSTHEKALDLARQN--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC 148
++ + ++AL++ + KD + + ++ L + + L
Sbjct: 127 -YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185
Query: 149 K------DLASCYISLAQTYKDNKQYNLAVDYFNKEL-RLHARNF----PEAVKTLGEIG 197
K ++A +LA Y ++ A + + L R H R F E
Sbjct: 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAE 245
Query: 198 DLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE 249
+ E + K + S E D + T ++++ LY++ KF
Sbjct: 246 EREECKGK-QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEA 296
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 45.8 bits (109), Expect = 1e-05
Identities = 21/170 (12%), Positives = 50/170 (29%), Gaps = 11/170 (6%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
+++ + LA D + N P L + ++ +
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVL 167
Query: 95 VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC 154
Q ++ ++ ++ + ++ ++ S L + L+
Sbjct: 168 KQH--------FEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS--LAEHLSET 217
Query: 155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE 204
L + Y + A F + + NF E L E+ L + Q+
Sbjct: 218 NFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQD 267
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 45.2 bits (108), Expect = 2e-05
Identities = 35/192 (18%), Positives = 70/192 (36%), Gaps = 30/192 (15%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
+ YI+L K+ + ++ AV + + L L N L + YE ++
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACV--YYEQGL--IDL 255
Query: 95 VQSTHEKALDL------ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC 148
T+ +A++L A N + K+ ++ A +T L LC
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLAN------------ALKEKGSVAEAEDCYNTALR--LC 301
Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE 208
A +LA ++ AV + K L + PE + + + Q K +
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQQGK-LQ 356
Query: 209 LVVSTHEKALDL 220
+ +++A+ +
Sbjct: 357 EALMHYKEAIRI 368
Score = 44.5 bits (106), Expect = 5e-05
Identities = 31/176 (17%), Positives = 70/176 (39%), Gaps = 28/176 (15%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
+ A + +LA Y + +LA+D + + + L +FP+A L + + E
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANA---LKEKGSVAEA 290
Query: 95 VQSTHEKALDL------ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC 148
+ AL L + N + + ++ N++ A L +
Sbjct: 291 EDC-YNTALRLCPTHADSLNNLAN------------IKREQGNIEEAVRLYRKALE--VF 335
Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE 204
+ A+ + +LA + + A+ ++ + +R+ + F +A +G L E+Q+
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNMGNT--LKEMQD 388
Score = 44.1 bits (105), Expect = 6e-05
Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 18/186 (9%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
+ A + +L + + LA+ +F K + L NF +A +G++ +
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDA---YINLGNVLKEARIFDRA 222
Query: 95 VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC 154
V + + +AL L+ + V ++ +Y + +D A +
Sbjct: 223 VAA-YLRALSLSPNHAV------VHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDA 273
Query: 155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTH 214
Y +LA K+ A D +N LRL +++ L I E E V +
Sbjct: 274 YCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANI--KREQGN--IEEAVRLY 328
Query: 215 EKALDL 220
KAL++
Sbjct: 329 RKALEV 334
Score = 43.7 bits (104), Expect = 9e-05
Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 18/186 (9%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
D + L+ + ++ + + + ++ + EA LG + E + +
Sbjct: 31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV--YKERGQ--LQE 85
Query: 95 VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC 154
+ AL L D ++ +++ A + L DL
Sbjct: 86 AIEHYRHALRLKPDFID------GYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLYCV 137
Query: 155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTH 214
L K + A + K + NF A LG + E L +
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCV--FNAQGE--IWLAIHHF 192
Query: 215 EKALDL 220
EKA+ L
Sbjct: 193 EKAVTL 198
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 44.1 bits (105), Expect = 5e-05
Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 48/195 (24%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF----PEAVKTLGEIGDLYELQEK 90
D+A +LA ++ + Y+ + L ++A P KT + Y Q K
Sbjct: 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184
Query: 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
++ A L ++ ++ + N D
Sbjct: 185 --------YQDAETLYKE---------ILTRAHEKEFGSVNG-----------------D 210
Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHA--RNFPEAVKTLGEIGDLYELQEKPFE 208
++ + + + + Y A + P TL +G LY Q K
Sbjct: 211 NKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK--- 267
Query: 209 LVVSTHEKALDLARQ 223
E A L
Sbjct: 268 -----LEAAHTLEDC 277
Score = 39.8 bits (94), Expect = 0.001
Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 46/198 (23%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF----PEAVKTLGEIGDLYELQEK 90
D+A+ LA Y+D +Y A N L + + P TL + LY + K
Sbjct: 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100
Query: 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLY-KKHDNLDSACSELHTVLSSDLCK 149
+++A L ++ + +K+ K H
Sbjct: 101 --------YKEAEPLCKR---------ALEIREKVLGKFH-------------------P 124
Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF----PEAVKTLGEIGDLYELQEK 205
D+A +LA ++ + Y+ + L ++A P KT + Y Q K
Sbjct: 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184
Query: 206 PFELVVSTHEKALDLARQ 223
++ + +++ L A +
Sbjct: 185 -YQDAETLYKEILTRAHE 201
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 42.2 bits (100), Expect = 2e-04
Identities = 24/185 (12%), Positives = 50/185 (27%), Gaps = 27/185 (14%)
Query: 40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAV----KTLGEIGDLYELQEKSFEIV 95
+ A + +Y A+ N + R K+ IG+ Y
Sbjct: 41 LNNRAAAEYEKGEYETAISTLNDAVEQ-GREMRADYKVISKSFARIGNAYHKLGD----- 94
Query: 96 QSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY 155
+K ++ K RT + K N + + + + A
Sbjct: 95 ---LKKTIEY--YQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN--PEKAEEA 142
Query: 156 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHE 215
+ Y + AV + + ++ L +L F ++
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAA--LAKLMS--FPEAIADCN 197
Query: 216 KALDL 220
KA++
Sbjct: 198 KAIEK 202
Score = 36.4 bits (85), Expect = 0.013
Identities = 23/192 (11%), Positives = 55/192 (28%), Gaps = 34/192 (17%)
Query: 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAV------KTLGEIGDLYELQE 89
+A + + +Q++ A++++NK LH + E G+ YE
Sbjct: 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGE-YETAI 58
Query: 90 KSFEIVQSTHEKALDLARQNKDDKLIR-TVMRSIKKLYKKHDNLDSACSELHTVLSSDLC 148
+ A++ R+ + D + I Y K +L
Sbjct: 59 STL-------NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE----------Y 101
Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE 208
+ A + + E ++ E + G+ + + +
Sbjct: 102 YQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKE--YFTKSD--WP 156
Query: 209 LVVSTHEKALDL 220
V + + +
Sbjct: 157 NAVKAYTEMIKR 168
Score = 32.9 bits (76), Expect = 0.19
Identities = 19/193 (9%), Positives = 53/193 (27%), Gaps = 26/193 (13%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-----ARNFPEAVKTLGEIGDLYELQE 89
++ + Y +++++ + K + + + + L + E
Sbjct: 70 EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAE 129
Query: 90 KSFEI----VQSTHEKALDLARQNKDDKLIRTVMRSIKK-------------LYKKHDNL 132
+ + + + ++ ++ IK+ K +
Sbjct: 130 AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF 189
Query: 133 DSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT 192
A ++ + + D + YI A K+Y A++ + A
Sbjct: 190 PEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAARTKDA-EVNNGSSA 246
Query: 193 LGEIGDLYELQEK 205
I LY +
Sbjct: 247 RE-IDQLYYKASQ 258
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 38.3 bits (89), Expect = 0.004
Identities = 35/210 (16%), Positives = 76/210 (36%), Gaps = 23/210 (10%)
Query: 89 EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC 148
E+ E E+ ++ K + + + + L + + + +
Sbjct: 141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR----- 195
Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE 208
+ +++LA + + ++ A++ NK L L + N K L G+ + FE
Sbjct: 196 ---LASHLNLAMCHLKLQAFSAAIESCNKALELDSNN----EKGLSRRGEAHLAVND-FE 247
Query: 209 LVVSTHEKALDLARQNKD--------DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260
L + +K L L NK + IR + KKLY F L + + + K+
Sbjct: 248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYAN--MFERLAEEENKAKAE 305
Query: 261 EEKLDLNSSSDEEDTILEDSPNIGDDINLE 290
D + ++ ++ ++ + E
Sbjct: 306 ASSGDHPTDTEMKEEQKSNTAGSQSQVETE 335
Score = 28.7 bits (64), Expect = 4.0
Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIV 95
+ +++LA + + ++ A++ NK L L + N K L G+ + FE+
Sbjct: 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN----EKGLSRRGEAHLAVND-FELA 249
Query: 96 QSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD 130
++ +K L L NK +T + ++ ++
Sbjct: 250 RADFQKVLQLYPNNKA---AKTQLAVCQQRIRRQL 281
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 38.1 bits (89), Expect = 0.005
Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 12/235 (5%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
+ ++LA +Y + A + ++ + + VK L KS
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPV- 188
Query: 95 VQSTHEKALDL---ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151
S E +L A D + + + L+ + A + L+ + +
Sbjct: 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT--VRPED 246
Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVV 211
S + L T + + AV+ + + L + F + LG L + V
Sbjct: 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGIS--CINLGA--YREAV 301
Query: 212 STHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266
S AL L R++++ + + S + ++Q + + LD+
Sbjct: 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356
Score = 28.1 bits (63), Expect = 7.0
Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 26/161 (16%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ 96
L + + ++N A+D FN L + LG L ++S E V+
Sbjct: 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGAT--LAN-GDRSEEAVE 268
Query: 97 STHEKALDL------ARQNKDDKLIRTVMRSIKKL------YKK----HDNLDSACSELH 140
+ + +AL++ +R N ++ + + H
Sbjct: 269 A-YTRALEIQPGFIRSRYNLG-----ISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322
Query: 141 TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL 181
+S ++ L + Q +D + L
Sbjct: 323 PAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNL 363
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 36.3 bits (84), Expect = 0.005
Identities = 10/96 (10%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVV 211
A ++ L + Y A+ ++ + + + + +
Sbjct: 52 ARYFLGLGACRQSLGLYEQALQSYSYGALM----DINEPRFPFHAAECHLQLGD-LDGAE 106
Query: 212 STHEKALDLARQNKDDKLIRTVMRSMKK-LYKKHDK 246
S A LA + + +M + + + D+
Sbjct: 107 SGFYSARALAAAQPAHEALAARAGAMLEAVTARKDR 142
Score = 32.4 bits (74), Expect = 0.13
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 13/97 (13%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG----EIGDLYELQEKSF 92
A ++ L + Y A+ ++ + N P ++GD + E F
Sbjct: 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQLGD-LDGAESGF 109
Query: 93 EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH 129
A LA + + ++ +
Sbjct: 110 -------YSARALAAAQPAHEALAARAGAMLEAVTAR 139
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 37.7 bits (88), Expect = 0.007
Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 35/186 (18%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
D + ++LA ++ + A + LR + V E L
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGP----- 183
Query: 95 VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC 154
+ L + ++ +L+ LD +
Sbjct: 184 ---SKRILGSLLSDSLFLEVK--------ELFLAAVRLDPTSID-------------PDV 219
Query: 155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTH 214
L + + +Y+ AVD F L + N LG L + E V+ +
Sbjct: 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGAT--LANGNQ--SEEAVAAY 274
Query: 215 EKALDL 220
+AL+L
Sbjct: 275 RRALEL 280
Score = 33.1 bits (76), Expect = 0.21
Identities = 21/185 (11%), Positives = 38/185 (20%), Gaps = 48/185 (25%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ 96
AV F ++ EA + LG
Sbjct: 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTT--------------- 107
Query: 97 STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI 156
A ++ I + R ++ L D + +
Sbjct: 108 --------QAENEQELLAISALRRCLE--------LKP---------------DNQTALM 136
Query: 157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEK 216
+LA ++ + A + LR + V E L L +
Sbjct: 137 ALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195
Query: 217 ALDLA 221
Sbjct: 196 LFLEV 200
Score = 28.1 bits (63), Expect = 6.1
Identities = 25/195 (12%), Positives = 49/195 (25%), Gaps = 57/195 (29%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ 96
L + + +Y+ AVD F L + N LG L +S E V
Sbjct: 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGAT--LAN-GNQSEEAVA 272
Query: 97 STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI 156
+ + +AL +L
Sbjct: 273 A-YRRAL------------------------------------------ELQPGYIRSRY 289
Query: 157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI--------GDLYELQEKPFE 208
+L + + + AV++F + L + R G + + + +
Sbjct: 290 NLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQ-SD 347
Query: 209 LVVSTHEKALDLARQ 223
+ + L
Sbjct: 348 AYGAADARDLSTLLT 362
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 35.1 bits (81), Expect = 0.010
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 17/99 (17%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
DLA CY+ L T++ +Y A ++ N + LY L
Sbjct: 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMV--LYNLGR----- 76
Query: 95 VQSTHEKALDLARQ----NKDDKLIRTVMRSIKKLYKKH 129
+E+ ++L + DD+ I++ ++I Y
Sbjct: 77 ----YEQGVELLLKIIAETSDDETIQSYKQAI-LFYADK 110
Score = 35.1 bits (81), Expect = 0.012
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 12/75 (16%)
Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFEL 209
DLA CY+ L T++ +Y A ++ N + LY L
Sbjct: 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMV--LYNLGR----- 76
Query: 210 VVSTHEKALDLARQN 224
+E+ ++L +
Sbjct: 77 ----YEQGVELLLKI 87
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 34.2 bits (79), Expect = 0.014
Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFEL 209
+ +LAQ + + + A+ F + + ++ L G LYE ++ +
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHL---GKLYERLDR-TDD 59
Query: 210 VVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKF 247
+ T+ + +++AR+ K + ++ K +
Sbjct: 60 AIDTYAQGIEVAREEGTQK----DLSELQDAKLKAEGL 93
Score = 32.6 bits (75), Expect = 0.051
Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
+ +LAQ + + + A+ F + + ++ L G LYE ++ +
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHL---GKLYERLDR-TDD 59
Query: 95 VQSTHEKALDLARQNKD 111
T+ + +++AR+
Sbjct: 60 AIDTYAQGIEVAREEGT 76
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 36.5 bits (85), Expect = 0.014
Identities = 21/186 (11%), Positives = 51/186 (27%), Gaps = 37/186 (19%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
+ + +LA ++ + N A+ L + + + +
Sbjct: 87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDID-------- 137
Query: 95 VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC 154
+ + A N+ + L ++ + A
Sbjct: 138 DLNVQSEDFFFAAPNEYRECR--------TLLHAALEMNP---------------NDAQL 174
Query: 155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTH 214
+ SL Y + Y+ A + + L + + LG L + + +
Sbjct: 175 HASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGAT--LANGNR--PQEALDAY 229
Query: 215 EKALDL 220
+ALD+
Sbjct: 230 NRALDI 235
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 36.7 bits (85), Expect = 0.014
Identities = 22/179 (12%), Positives = 40/179 (22%), Gaps = 52/179 (29%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
++ LA + L LH PEAV LG + ++
Sbjct: 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRV----RWTQQRHAE 75
Query: 95 VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC 154
++A D A +
Sbjct: 76 AAVLLQQASDAAP------------------------------------------EHPGI 93
Query: 155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA----VKTLGEIGDLYELQEKPFEL 209
+ L +D Q A + + +L P + + D L ++
Sbjct: 94 ALWLGHALEDAGQAEAAAAAYTRAHQL-LPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151
Score = 29.0 bits (65), Expect = 4.2
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 79
D + + L +D Q A + + +L P L
Sbjct: 85 DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL-LPEEPYITAQLL 132
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.015
Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 19/90 (21%)
Query: 187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK 246
PE+++ E LQE D A + + + + +++ ++ +
Sbjct: 84 PESIRKWREEQRK-RLQEL-------------DAASKVMEQEWREKAKKDLEEWNQRQSE 129
Query: 247 FTELEQIKTELKSLEEKLDLNSSSDEEDTI 276
++E+ K + ++ + D I
Sbjct: 130 --QVEKNKINNRIADKAF---YQQPDADII 154
Score = 28.2 bits (62), Expect = 4.7
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 18/75 (24%)
Query: 289 LEELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGA 348
L+EL D SK + + + + + +++++ +E NR+
Sbjct: 98 LQEL------DAASKVMEQEWREKAKKDLEEWNQRQSEQ--------VEK-NKINNRIAD 142
Query: 349 QEVRKLLSLLNADLL 363
+ +AD++
Sbjct: 143 KA---FYQQPDADII 154
Score = 27.4 bits (60), Expect = 7.5
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 15/57 (26%)
Query: 62 KELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQST---HEKALDLARQNKDDKLI 115
+E R A+ ++ + + Q + E + +KA Q D +I
Sbjct: 110 QEWREKAKK---------DLEEWNQRQSEQVEKNKINNRIADKAF---YQQPDADII 154
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 34.9 bits (80), Expect = 0.017
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVV 211
+ ++ L + QY+LA+ ++ + + + LQ
Sbjct: 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD----IXEPRFPFHAAECL-LQXGELAEAE 109
Query: 212 STHEKALDLARQNKDDKLIRTVMRSMKKLYKK 243
S A +L + + T + SM + K
Sbjct: 110 SGLFLAQELIANXPEFXELSTRVSSMLEAIKL 141
Score = 33.3 bits (76), Expect = 0.059
Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 5/80 (6%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ 96
+ ++ L + QY+LA+ ++ + + + LQ +
Sbjct: 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD----IXEPRFPFHAAECL-LQXGELAEAE 109
Query: 97 STHEKALDLARQNKDDKLIR 116
S A +L + +
Sbjct: 110 SGLFLAQELIANXPEFXELS 129
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK
guanine nucleotide exchange factors; 2.70A {Homo
sapiens} PDB: 3b13_A
Length = 436
Score = 36.5 bits (84), Expect = 0.019
Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYEL----- 87
+ SC ++L YKDN + + + Y K LH N+ EA TL L +
Sbjct: 13 NRMSCTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQC 72
Query: 88 -----------QEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSAC 136
+ ++ ++ +E + + K + ++ + + + Y+
Sbjct: 73 ASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELL 132
Query: 137 SELHTVLSS 145
S+ +
Sbjct: 133 SQNLIQQAK 141
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 36.4 bits (84), Expect = 0.025
Identities = 39/325 (12%), Positives = 86/325 (26%), Gaps = 28/325 (8%)
Query: 46 TYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDL 105
Y K + V + + E R+ +A+ G+ + EKS+ A
Sbjct: 692 IYDATKTFGNIVTFRDLE-----RSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDAA-- 744
Query: 106 ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN 165
+ R M + +L ++ + S SE L + ++ Q Y +
Sbjct: 745 -----TGEAKRGFMTVVSELEQRFPDPTSIESEKEKKDFVKLFGEYLRAE-NILQNYDEF 798
Query: 166 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK 225
+ + E + +L ++ + D+ +
Sbjct: 799 ATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQR 858
Query: 226 DDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKL--------DLNSSSDEEDTIL 277
+K +S + L+ + L + + +E ++
Sbjct: 859 REKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEMIEEVKRLI 918
Query: 278 EDSPN-------IGDDINLEELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKDSN 330
S + D I L DL ++ + + N +
Sbjct: 919 RSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIKEENLNEDA 978
Query: 331 LNLYNIESITISRNRLGAQEVRKLL 355
Y S+ E+ + L
Sbjct: 979 AKRYIRTSLKREYATENGTELNETL 1003
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.025
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 349 QEVRKL---LSLLNADLLVHLNLSATLE 373
Q ++KL L L D L + AT+E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
Score = 32.6 bits (73), Expect = 0.12
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 14/40 (35%)
Query: 254 KTELKSLEEKLDLNSSSDEEDTILEDS-PNIGDDIN--LE 290
K LK L+ L L + +DS P + I +E
Sbjct: 19 KQALKKLQASLKLYA---------DDSAPALA--IKATME 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 35.4 bits (81), Expect = 0.038
Identities = 37/247 (14%), Positives = 74/247 (29%), Gaps = 31/247 (12%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
+L + L + Y A F+ L +N +++ L + L +LQ S +
Sbjct: 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-CKNK-VSLQNLSMV--LRQLQTDSGDE 190
Query: 95 VQSTHEKALDLARQ----NKDD-----KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS 145
++ A+ + D L + + A S
Sbjct: 191 HSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250
Query: 146 D-LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE 204
D +++ A +K + Y A++ F++ L +PE + ++ L L
Sbjct: 251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQL--LEFLSR 307
Query: 205 KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKL 264
L+ + K KL +SM + + + L
Sbjct: 308 ---------LTSLLESKGKTKPKKL-----QSMLGSLRPAHLGPCGDGRYQSASGQKMTL 353
Query: 265 DLNSSSD 271
+L S
Sbjct: 354 ELKPLST 360
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 34.7 bits (80), Expect = 0.043
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS 91
K LA Y Y ++Y+LA+ + L N K LG L+ +
Sbjct: 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL- 124
Query: 92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIK-KLYKKHDNLDSA 135
+ A A++ + K + + K +H +D A
Sbjct: 125 -------YNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162
Score = 34.3 bits (79), Expect = 0.059
Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 29/174 (16%)
Query: 125 LYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184
+Y N+ A ++ K LA Y Y ++Y+LA+ + L
Sbjct: 46 MYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103
Query: 185 NFPEAVKTLGEIGDLYELQEKP-----------FELVVSTHEKALDL---ARQNKDDKLI 230
N K LG L+ + ++ A + R +K DK +
Sbjct: 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAM 163
Query: 231 RTVMR---------SMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDT 275
V + + +L++ +++ ++ Q+ K K + +S ++D+
Sbjct: 164 ECVWKQKLYEPVVIPVGRLFRPNER--QVAQLAK--KDYLGKATVVASVVDQDS 213
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 35.0 bits (81), Expect = 0.049
Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 4/107 (3%)
Query: 180 RLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKK 239
+ NF + ++EK + +S ++ N+ +++
Sbjct: 114 IIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEI--VNRASLAAGPMVKWAIA 171
Query: 240 LYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDD 286
D +E ++ EL+ LE+ + + + +L P
Sbjct: 172 QLNYADMLKRVEPLRNELQKLEDDAK--DNQQKLEALLLQVPLPPWP 216
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 34.7 bits (79), Expect = 0.061
Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 22/173 (12%)
Query: 123 KKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH 182
Y K + L S L + +++LA Y ++Y AV+ +K L L
Sbjct: 288 VIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347
Query: 183 ARNFPEAVKTL---GEIGDLYELQEKPFELVVSTHEKALDLARQNKD--------DKLIR 231
+ N K L GE + E FE EK L++ QNK K +
Sbjct: 348 SAN----EKGLYRRGEA--QLLMNE--FESAKGDFEKVLEVNPQNKAARLQISMCQKKAK 399
Query: 232 TVMRSMKKLYKK-HDKFTELEQIKTELKSLEEKLD--LNSSSDEEDTILEDSP 281
+++Y KF E + + K++ +K + + + +E+
Sbjct: 400 EHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEK 452
Score = 31.2 bits (70), Expect = 0.87
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 22/100 (22%)
Query: 38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL-------GEIGDLYELQEK 90
+ +++LA Y ++Y AV+ +K L L + N K L + + +E +
Sbjct: 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNE-FESAKG 372
Query: 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD 130
F EK L++ QNK R + +K K+H+
Sbjct: 373 DF-------EKVLEVNPQNKA---ARLQISMCQKKAKEHN 402
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 33.6 bits (78), Expect = 0.090
Identities = 28/179 (15%), Positives = 51/179 (28%), Gaps = 34/179 (18%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI-GDLYELQE--KS 91
A+ Y Y + Y A D F K LR + LG + L + +
Sbjct: 89 SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPY 147
Query: 92 FEIVQSTHEKALDL------ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS 145
++A++L AR LD A S+ V
Sbjct: 148 L-------QRAVELNENDTEARFQFGM------------CLANEGMLDEALSQFAAVTE- 187
Query: 146 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE 204
A + + TY + A++ +K + + + A+ + +
Sbjct: 188 -QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP-DHMLALHAKKLL--GHHHHH 242
Score = 29.0 bits (66), Expect = 2.6
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFEL 209
A+ Y Y + Y A D F K LR + LG + L +L++ +L
Sbjct: 89 SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTV--LVKLEQ--PKL 143
Query: 210 VVSTHEKALDL 220
+ ++A++L
Sbjct: 144 ALPYLQRAVEL 154
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 34.3 bits (79), Expect = 0.096
Identities = 18/163 (11%), Positives = 37/163 (22%), Gaps = 13/163 (7%)
Query: 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS 91
L S + + + + L PE V + G + E
Sbjct: 339 LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT----PEQVVAIASNGGGKQALETV 394
Query: 92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151
++ +A L + + S + + + L L
Sbjct: 395 QRLLPV-LCQAHGLTPEQVV------AIASHDGGKQALETVQRLLPVLCQAHG--LTPQQ 445
Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194
S + + + L + A+ LG
Sbjct: 446 VVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLG 488
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase;
2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A
3ih9_A 3iha_A* 3ihb_A 2dfw_A
Length = 456
Score = 33.2 bits (75), Expect = 0.18
Identities = 23/174 (13%), Positives = 41/174 (23%), Gaps = 14/174 (8%)
Query: 257 LKSLEEKLDLN--SSSDEEDTILEDSPNIGDDINLEELSDLNSADEESKEDQDKRTNRKR 314
+ L E L+ T + GD + L + E+ D
Sbjct: 295 CRRLSEDFRLHLMDGDSLGGTAVRFVEREGDRVFLHLQGVIRFGGAEAVLDALTD----- 349
Query: 315 APRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLET 374
++ + + +
Sbjct: 350 -------LRTGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAARDENDG 402
Query: 375 PTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANH 428
P +++ + R V+ L G V+V+D LPL EA H
Sbjct: 403 PIRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPERILPLEEAGAH 456
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 32.1 bits (74), Expect = 0.27
Identities = 27/190 (14%), Positives = 59/190 (31%), Gaps = 26/190 (13%)
Query: 40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI-GDLYELQE--KSFEIVQ 96
+ L +Y+ A+ F + L+ + PEA+ L L + ++ +
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGK--- 63
Query: 97 STHEKALDL------ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
+ + + R + + L+ A S L +
Sbjct: 64 ----TLVARTPRYLGGYMVLSEAY-VALYRQAEDRERGKGYLEQALSVLKDAER--VNPR 116
Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELV 210
A ++ Y + + A + L L + PE L E+ + +
Sbjct: 117 YAPLHLQRGLVYALLGERDKAEASLKQALAL--EDTPEIRSALAEL--YLSMGR--LDEA 170
Query: 211 VSTHEKALDL 220
++ + KAL+
Sbjct: 171 LAQYAKALEQ 180
Score = 31.0 bits (71), Expect = 0.65
Identities = 22/195 (11%), Positives = 50/195 (25%), Gaps = 40/195 (20%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
LA+T N A++ + + L E L ++ +
Sbjct: 37 QDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEA--YVALYRQAEDR 93
Query: 95 VQSTHEKALDLARQNKDDKLIRTVMRSIK-------------KLYKKHDNLDSACSELHT 141
+ + ++ + + + + +Y D A + L
Sbjct: 94 ER----------GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143
Query: 142 VLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG----EIG 197
L+ +D +LA+ Y + + A+ + K L + G
Sbjct: 144 ALA---LEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKG 199
Query: 198 DL------YELQEKP 206
L+
Sbjct: 200 KAEEAARAAALEHHH 214
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 32.3 bits (73), Expect = 0.31
Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 21/180 (11%)
Query: 88 QEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL 147
E+ L ++ K ++ ++ +I + +
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQ------DMA 225
Query: 148 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPF 207
C++++A K+Y+ A+ + N L +N K L G +
Sbjct: 226 LAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN----PKALFRRGKAKAELGQ-M 280
Query: 208 ELVVSTHEKALDLARQNKD--------DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS 259
+ KA A +K + + + + K++YK F ++ + KS
Sbjct: 281 DSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG--IFKGKDEGGAKSKS 338
Score = 30.4 bits (68), Expect = 1.3
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS 91
C++++A K+Y+ A+ + N L +N K L G +
Sbjct: 225 ALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN----PKALFRRGKAK-AELGQ 279
Query: 92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD 130
+ + KA A +K IR +R++ + K
Sbjct: 280 MDSARDDFRKAQKYAPDDKA---IRRELRALAEQEKALY 315
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 31.8 bits (73), Expect = 0.52
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 11/107 (10%)
Query: 180 RLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKK 239
L R E VK + EI +L + + + +NK I + +
Sbjct: 17 DLIKRGELEKVKWVDEI---LKLDTEWRTKLKEINRLR---HERNKIAVEIGKRRKKGEP 70
Query: 240 LYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDD 286
+ + +I + LE +++ + D L PNI
Sbjct: 71 ---VDELLAKSREIVKRIGELENEVE--ELKKKIDYYLWRLPNITHP 112
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 31.9 bits (73), Expect = 0.54
Identities = 14/112 (12%), Positives = 29/112 (25%), Gaps = 13/112 (11%)
Query: 180 RLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKK 239
L R K L I ++ +L + + +R ++ +
Sbjct: 56 ALDLRKGELRSKDLPGI---ISTWQELRQLREQIRSLE---EEKEAVTEAVRALVVNQDN 109
Query: 240 LYKKHDKFT-----ELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDD 286
+ D +I+ +L L K ++ PN
Sbjct: 110 SQVQQDPQYQSLRARGREIRKQLTLLYPKEA--QLEEQFYLRALRLPNQTHP 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 30.3 bits (69), Expect = 0.54
Identities = 12/98 (12%), Positives = 29/98 (29%), Gaps = 5/98 (5%)
Query: 146 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 205
+ A Y + A + A+ NK + P V+ ++
Sbjct: 32 KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----PNFVRAYIRKATAQIAVKE 87
Query: 206 PFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK 243
+ + T + A + + R + + K ++
Sbjct: 88 -YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124
Score = 28.0 bits (63), Expect = 3.2
Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 5/98 (5%)
Query: 31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
+ A Y + A + A+ NK + P V+ ++
Sbjct: 32 KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----PNFVRAYIRKATAQIAVKE 87
Query: 91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK 128
+ T + A + + R + + K ++
Sbjct: 88 -YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1
PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A*
1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Length = 1247
Score = 32.0 bits (72), Expect = 0.55
Identities = 14/59 (23%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Query: 405 LKQGHPVKVQDSA---GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS--AGWLPLH 458
GH + A GWLP I AG +P D S G +
Sbjct: 638 RYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFA 696
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle,
transferase, spindle assembly checkpoint, mitosi repeat,
KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Length = 152
Score = 30.2 bits (68), Expect = 0.75
Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 1/97 (1%)
Query: 89 EKSFEIVQSTHEKALDLA-RQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL 147
E++F + L+ ++ D K R I K + + + +
Sbjct: 37 EENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSDLHQFFEFLYNHGI 96
Query: 148 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR 184
+ YI+ A + + A + ++ A
Sbjct: 97 GTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 31.6 bits (72), Expect = 0.75
Identities = 19/147 (12%), Positives = 46/147 (31%), Gaps = 9/147 (6%)
Query: 177 KELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKAL-DLARQNKDDKLIRTVMR 235
E+ +A + E + ++K +++ + + L L +
Sbjct: 846 NEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNE 905
Query: 236 SMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDE-------EDTILEDSPNIGDDIN 288
+ + K LE E +SLE + + + S + + E +
Sbjct: 906 TGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFA 965
Query: 289 LEELSDLNSADEESKEDQDKRTNRKRA 315
++ + + S+ E K R +
Sbjct: 966 -QQWTGVKSSAETYKNTLLAELERLQK 991
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Length = 109
Score = 29.7 bits (66), Expect = 0.77
Identities = 12/66 (18%), Positives = 24/66 (36%)
Query: 248 TELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDDINLEELSDLNSADEESKEDQD 307
ELE + ELK E K++ ++ ++ I + + + E + E +
Sbjct: 24 KELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRT 83
Query: 308 KRTNRK 313
K
Sbjct: 84 KELGYT 89
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 30.5 bits (70), Expect = 0.78
Identities = 20/186 (10%), Positives = 47/186 (25%), Gaps = 52/186 (27%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
+ L Y + + + L + + LG ++Q+
Sbjct: 40 FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLT--YVQVQK----- 91
Query: 95 VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC 154
++ A+ L K + +
Sbjct: 92 ----YDLAV--------------------PLLIKVAEANP---------------INFNV 112
Query: 155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTH 214
L + +++ A+D F L L N + + + ++ E +
Sbjct: 113 RFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFS--YEQMGR--HEEALPHF 167
Query: 215 EKALDL 220
+KA +L
Sbjct: 168 KKANEL 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 29.9 bits (68), Expect = 0.80
Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 42/167 (25%)
Query: 30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE 89
S+ D A L K + A +++K + L P + +Y ++
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD----PSNITFYNNKAAVYFEEK 56
Query: 90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK 149
K F EKA+++ R+ + D K
Sbjct: 57 K-FAECVQFCEKAVEVGRETRADY-----------------------------------K 80
Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196
+A ++ +LAV +F++ L R+ PE VK + E+
Sbjct: 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF-RD-PELVKKVKEL 125
Score = 26.9 bits (60), Expect = 7.9
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 145 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE 204
S+ D A L K + A +++K + L P + +Y ++
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD----PSNITFYNNKAAVYFEEK 56
Query: 205 KPFELVVSTHEKALDLARQNKDDKLIR 231
K F V EKA+++ R+ + D +
Sbjct: 57 K-FAECVQFCEKAVEVGRETRADYKLI 82
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 0.80
Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 28/101 (27%)
Query: 113 KLIRTVMRSIKKLYKKHDNLDSACSELHTV---LSS--DLCKDLASCYISLAQTYKDNKQ 167
+ + V + +Y K+ + S L V S D + L +I Y K
Sbjct: 510 RFSKQVTDYYQSIYAKY---GAKGSTLIVVPFNQGSKQD-VEALIE-FI-----YDTEKN 559
Query: 168 YNLA--VDY---FNKELRLHARNFPEAVKTLGEIGDLYELQ 203
L +D F PE L I E
Sbjct: 560 GGLGWDLDAIIPFAA--------IPEQGIELEHIDSKSEFA 592
Score = 29.8 bits (67), Expect = 2.3
Identities = 21/120 (17%), Positives = 33/120 (27%), Gaps = 37/120 (30%)
Query: 386 ETALHVAAARGNLTLVQSL---------LKQG----------HPVKVQDSAGWLPLH-EA 425
ETA G+ + + L +G V AG +P A
Sbjct: 940 ETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLV---AGQIPTGWNA 996
Query: 426 ANHG-------HTD--IVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG 476
+G D + LVS + +G +E + H V +G
Sbjct: 997 KTYGISDDIISQVDPITLFVLVSV----VEAFIA-SGITDPYEMYKYVHVSEVGNCSGSG 1051
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 30.9 bits (71), Expect = 0.93
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 17/112 (15%)
Query: 184 RNFPEAVKTL---------GEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVM 234
R P+ VK + + EL ++ E++ + +NK K I +
Sbjct: 8 REKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEAL---RSERNKLSKEIGKLK 64
Query: 235 RSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDD 286
R K + ++++K E+ LEE+L +E L PN+
Sbjct: 65 REGKDT---TEIQNRVKELKEEIDRLEEELR--KVEEELKNTLLWIPNLPHP 111
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric
regulation, ACT domain, transferase, amino acid
biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP:
c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Length = 449
Score = 30.3 bits (69), Expect = 1.3
Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 215 EKALDLARQNKDDKLIRTVMRS----MKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSS 270
+ + + + + +++L + E+E++ + L E L +S
Sbjct: 49 VALAEGLEPGERFEKLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEAAALATSP 108
Query: 271 DEEDTIL 277
D ++
Sbjct: 109 ALTDELV 115
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 29.3 bits (67), Expect = 1.3
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFEL 209
A + +L Y Y+ A++Y+ K L L EA LG Y+ + ++
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNA--YYKQGD--YDE 121
Query: 210 VVSTHEKALDL 220
+ ++KAL+L
Sbjct: 122 AIEYYQKALEL 132
Score = 28.5 bits (65), Expect = 2.4
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFEL 209
A + +L Y Y+ A++Y+ K L L EA LG Y+ + ++
Sbjct: 33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNA--YYKQGD--YDE 87
Query: 210 VVSTHEKALDL 220
+ ++KAL+L
Sbjct: 88 AIEYYQKALEL 98
Score = 27.0 bits (61), Expect = 7.3
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA 74
A + +L Y Y+ A++Y+ K L L EA
Sbjct: 33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEA 71
Score = 27.0 bits (61), Expect = 7.8
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA 74
A + +L Y Y+ A++Y+ K L L EA
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEA 105
>2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase, glycyl
R hyperthermophilic, unknown function; HET: PGE; 2.90A
{Archaeoglobus fulgidus}
Length = 776
Score = 30.7 bits (69), Expect = 1.4
Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 106 ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN 165
D + + V+ S KL ++NL + S + S L + + +L ++ +
Sbjct: 661 PSTGMDREGVTAVINSASKL--SYENLPNGASLTINLSSDVLGEKGDAVIEALIKSSMEL 718
Query: 166 KQYNLAVDYFNKELRLHARNFPEAVKTL 193
++ + ++L A+ PE + L
Sbjct: 719 GVMHVQFNILKEDLLRKAQQEPEKYRWL 746
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 29.4 bits (66), Expect = 1.5
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVV 211
+ LA Y+ +Q+ A D + L +N V G+ L+
Sbjct: 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC--QLRLKA--PLKAK 124
Query: 212 STHEKALDLARQNKDDKLIRTVMRSMK 238
E + + K ++ + +++
Sbjct: 125 ECFELVIQHSNDEKLKIKAQSYLDAIQ 151
Score = 28.2 bits (63), Expect = 3.0
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ 96
+ LA Y+ +Q+ A D + L +N V G+ L+ +
Sbjct: 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC--QLRLKA--PLKAK 124
Query: 97 STHEKALDLARQNKDDKLIRTVMRSIK 123
E + + K ++ + +I+
Sbjct: 125 ECFELVIQHSNDEKLKIKAQSYLDAIQ 151
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 28.1 bits (64), Expect = 1.6
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE 208
+ A + +L Y Y+ A++Y+ K L L N EA LG Y+ + ++
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA--YYKQGD--YD 60
Query: 209 LVVSTHEKALDL 220
+ ++KAL+L
Sbjct: 61 EAIEYYQKALEL 72
Score = 26.6 bits (60), Expect = 6.5
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA 74
+ A + +L Y Y+ A++Y+ K L L N EA
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEA 45
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 29.8 bits (68), Expect = 2.0
Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 21/125 (16%)
Query: 177 KELRLHARNFPEAVKTLGE---IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTV 233
K LR F A++ G + L L + EL E +N+ K +
Sbjct: 5 KRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEV---QTERNQVAKRV--- 58
Query: 234 MRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNI--------GD 285
+K + + E K LEE L + +L P G+
Sbjct: 59 --PKAPPEEKEALIARGKALGEEAKRLEEA--LREKEARLEALLLQVPLPPWPGAPVGGE 114
Query: 286 DINLE 290
+ N E
Sbjct: 115 EANRE 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 28.5 bits (65), Expect = 2.0
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE 208
+ A + +L Y Y+ A++Y+ K L L N EA LG Y+ + ++
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA--YYKQGD--YD 60
Query: 209 LVVSTHEKALDL 220
+ ++KAL+L
Sbjct: 61 EAIEYYQKALEL 72
Score = 28.1 bits (64), Expect = 2.9
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFEL 209
+ A + +L Y Y+ A++Y+ K L L N EA LG Y+ + ++
Sbjct: 41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA--YYKQGD--YDE 95
Query: 210 VVSTHEKALDL 220
+ ++KAL+L
Sbjct: 96 AIEYYQKALEL 106
Score = 27.4 bits (62), Expect = 5.1
Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 48/156 (30%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFE 93
+ A + +L Y Y+ A++Y+ K L L N EA LG Y+ +
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA--YYKQGD---- 58
Query: 94 IVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLAS 153
+++A+ + Y+K LD + A
Sbjct: 59 -----YDEAI--------------------EYYQKALELDP---------------NNAE 78
Query: 154 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA 189
+ +L Y Y+ A++Y+ K L L N EA
Sbjct: 79 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEA 113
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 29.4 bits (66), Expect = 2.1
Identities = 33/142 (23%), Positives = 52/142 (36%), Gaps = 15/142 (10%)
Query: 124 KLYKKHDNLDSACSELHTVLSSDLCKDL-ASCYISLAQTYKDNKQYNLAVDYFNKELRLH 182
YK+ + E + D K++ SC ++LA Y NK Y A+D+ +K L++
Sbjct: 59 VKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118
Query: 183 ARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD--------DKLIRTVM 234
N VK L ++G E KA L N D ++
Sbjct: 119 KNN----VKALYKLGVANMYFGF-LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 173
Query: 235 RSMKKLYKKH-DKFTELEQIKT 255
+ K + DK E+ K
Sbjct: 174 KKDKLTFGGMFDKGPLYEEKKN 195
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 29.6 bits (67), Expect = 2.7
Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 10/164 (6%)
Query: 159 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKAL 218
QT + V + K E + ++ K + + +K
Sbjct: 833 LQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYN 892
Query: 219 DLARQNKDDKLIRTVMRSMKKLY----KKHDKFTELEQIKTELKSLEEKL--DLNSSSDE 272
+ ++ ++ ++V + K LE E +SLE + DL S +
Sbjct: 893 RILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQ 952
Query: 273 EDTILEDSPN----IGDDINLEELSDLNSADEESKEDQDKRTNR 312
+ + D ++ + + S+ E K R
Sbjct: 953 LTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELER 996
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 29.1 bits (65), Expect = 3.2
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 13/49 (26%)
Query: 400 LVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKV 448
L K+G+ + H DI++ A + V
Sbjct: 258 YADVLRKKGYKAS---------FTLFKGYDHFDIIEET----AIDDSDV 293
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo
sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A
4ehl_A 1i3o_A
Length = 277
Score = 28.9 bits (64), Expect = 3.3
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 12/97 (12%)
Query: 278 EDSPNIGDDINLEELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIE 337
E+S + NLE S +S D +I +N N
Sbjct: 5 ENSVDSKSIKNLEPKIIHGSESMDSGISLDNSYKMDYPEMGLCII--------INNKNFH 56
Query: 338 SITISRNRLGA----QEVRKLLSLLNADLLVHLNLSA 370
T +R G +R+ L ++ +L+
Sbjct: 57 KSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTR 93
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein
structure initiative, midwest center for structural
genomics, membrane; 1.50A {Streptococcus mutans UA159}
SCOP: d.145.1.4
Length = 87
Score = 27.3 bits (61), Expect = 3.5
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 254 KTELKSLEEKLDLNSSSDEEDTI-------LEDSPNIGDDINLE 290
L E + + SD DTI + P+ + + E
Sbjct: 15 TMTLNDFNEYFETDLESDNVDTIAGFYLTGVGTIPSQEEKEHFE 58
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 28.0 bits (63), Expect = 3.5
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
+ +A Y + +Y ++Y A+ ++NK L H P+ +K + + + QE+
Sbjct: 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEKILKEQER 130
Score = 28.0 bits (63), Expect = 3.5
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 205
+ +A Y + +Y ++Y A+ ++NK L H P+ +K + + + QE+
Sbjct: 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEKILKEQER 130
>2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP:
c.68.1.22
Length = 551
Score = 29.0 bits (63), Expect = 4.0
Identities = 21/205 (10%), Positives = 62/205 (30%), Gaps = 7/205 (3%)
Query: 83 DLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTV 142
++Y K E+V + K R + ++ +++L K A L +
Sbjct: 44 EIYSKLSKLNELVDNYQTKYPSSGRNLALENFRDSLYSELRELIKNSRTSTIASKNLSFI 103
Query: 143 LSSDLCKDLASCYISLAQTYKDNKQYNLAVD-------YFNKELRLHARNFPEAVKTLGE 195
D + Y ++ + + + L D + +
Sbjct: 104 WIGGPISDQSLEYYNMWKMFNKDYNIRLFYDKNSLLVNTLKTAIIQESSKVIIEQNQSNI 163
Query: 196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKT 255
+ Y + + + + +L ++ K +V + + K+ +
Sbjct: 164 LDGTYGHNKFYSDRMKLIYRYKRELKMLYENMKQNNSVDDIIINFLSNYFKYDIGKLNNQ 223
Query: 256 ELKSLEEKLDLNSSSDEEDTILEDS 280
+ + + + + ++ + IL +
Sbjct: 224 KENNNNKMIAIGATDINTENILTNK 248
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional
regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB:
1q09_A 1q0a_A
Length = 99
Score = 27.3 bits (60), Expect = 4.1
Identities = 10/62 (16%), Positives = 24/62 (38%)
Query: 218 LDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDTIL 277
L + + + ++L + + EL+ ++ L+ L + + S +IL
Sbjct: 26 LSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHSSVYCSIL 85
Query: 278 ED 279
E
Sbjct: 86 EA 87
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle,
KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 223
Score = 28.5 bits (63), Expect = 4.5
Identities = 9/75 (12%), Positives = 29/75 (38%)
Query: 110 KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN 169
+ L + +R ++ + + +D + + ++ + Y A ++ +
Sbjct: 108 VRNPLYKDDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQ 167
Query: 170 LAVDYFNKELRLHAR 184
A + + K R+ A+
Sbjct: 168 KADEVYQKGKRMKAK 182
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 28.4 bits (62), Expect = 5.5
Identities = 35/236 (14%), Positives = 69/236 (29%), Gaps = 27/236 (11%)
Query: 33 CKDLASCYISLAQTYKDNKQY-NLA-VD---YFNKEL--RLHARNFPEAVKTLGEIGDLY 85
A + LA KD + NLA +D N + + FP T+
Sbjct: 45 AIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFP----TV------- 93
Query: 86 ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS 145
+ F Q+ + + MR I L D AC L +
Sbjct: 94 ----RFF---QAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLN 146
Query: 146 DLCKDLASCYIS-LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE 204
D+ LA ++ Y L + + HA + T ++ + + + +
Sbjct: 147 DIDGFFTRNKADYLALVFEREDSY-LGREVTLDLSQYHAVAVRRVLNTESDLVNKFGVTD 205
Query: 205 KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260
P ++ + + + + +R + L + T ++
Sbjct: 206 FPSCYLLLRNGSVSRVPVLVESRSFYTSYLRGLPGLTRDAPPTTATPVTADKIAPT 261
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain
enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Length = 301
Score = 28.3 bits (64), Expect = 5.5
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 24/78 (30%)
Query: 402 QSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461
+LLK+G V D L EA V A+V+ GA + ++ + A
Sbjct: 21 INLLKEGVTVYAFD------LMEAN-------VAAVVAQGA----QACENNQ-----KVA 58
Query: 462 NHGHTDIVQALVSAGAEV 479
+DI+ + V
Sbjct: 59 --AASDIIFTSLPNAGIV 74
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.4 bits (64), Expect = 5.9
Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 16/118 (13%)
Query: 177 KELRLHARNFPEAVK--------TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK 228
+ PE +K ++ + ++ ++ +L E + N K
Sbjct: 5 NAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHN---KKLNSVQK 61
Query: 229 LIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDD 286
I ++ + D E E++ E K + EK + + + NI +
Sbjct: 62 EIGKRFKAKED---AKDLIAEKEKLSNEKKEIIEKEA--EADKNLRSKINQVGNIVHE 114
>3llb_A Uncharacterized protein; protein PA3983, unknown function,
structural genomics, PSI2, MCSG, protein structure
initiative; 1.80A {Pseudomonas aeruginosa}
Length = 83
Score = 26.4 bits (59), Expect = 6.1
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 7/44 (15%)
Query: 254 KTELKSLEEKLDLNSSSDEEDTI-------LEDSPNIGDDINLE 290
T + + + S +E DT+ P + + L
Sbjct: 16 LTPVDAFNDFFGSEFSDEEFDTVGGLVMSAFGHLPKRNEVVELG 59
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate,
rossmann fold, alpha-aminoadipate pathway, fungal lysine
biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB:
2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Length = 394
Score = 28.1 bits (62), Expect = 6.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 401 VQSLLKQGHPVKVQDSAG 418
V+ L+ +G + V+DS
Sbjct: 47 VKKLIAKGFKIYVEDSPQ 64
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2,
structural genomics, Pro structure initiative; 1.70A
{Neisseria meningitidis} SCOP: d.145.1.4
Length = 91
Score = 26.4 bits (59), Expect = 6.3
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 16/66 (24%)
Query: 244 HDKFTELEQI---------KTELKSLEEKLDLNSSSDEEDTI-------LEDSPNIGDDI 287
D + + TE++ + SS+E DTI L P G+ +
Sbjct: 6 DDSADNIHAVSSERWRIHAATEIEDINTFFGTEYSSEEADTIGGLVIQELGHLPVRGEKV 65
Query: 288 NLEELS 293
+ L
Sbjct: 66 LIGGLQ 71
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell
adhesion; NMR {Homo sapiens} PDB: 2p03_A
Length = 323
Score = 28.2 bits (62), Expect = 6.9
Identities = 12/65 (18%), Positives = 24/65 (36%)
Query: 249 ELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDDINLEELSDLNSADEESKEDQDK 308
ELE + ELK E K++ ++ ++ I + + + E + E + K
Sbjct: 239 ELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTK 298
Query: 309 RTNRK 313
Sbjct: 299 ELGYT 303
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 27.9 bits (62), Expect = 7.0
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 391 VAAARGNL--TLVQSLLKQGHPVKV 413
+ G + +V+ LK GHP V
Sbjct: 16 IFGGTGYIGNHMVKGSLKLGHPTYV 40
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor
suppressor, TPR, apoptosis, cell division, cell cycle,
kinetochore, transferase; 1.80A {Homo sapiens} PDB:
3si5_A
Length = 164
Score = 27.5 bits (61), Expect = 7.2
Identities = 13/75 (17%), Positives = 28/75 (37%)
Query: 110 KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN 169
+ +K + R + K + + + + LA YIS A+ Y+ + +
Sbjct: 54 QGEKRYYSDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFR 113
Query: 170 LAVDYFNKELRLHAR 184
A F + ++ A
Sbjct: 114 KADAIFQEGIQQKAE 128
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 28.1 bits (63), Expect = 7.6
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 17/65 (26%)
Query: 58 DYFNKELRLHARNFPEAVKTLGEIG-DLY-------ELQEKSFEIVQSTHEKALDLARQN 109
+ + EL L + V +GEIG D E Q + L +
Sbjct: 114 EGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFSDKETQLSGY-------RTLSILHQ-- 164
Query: 110 KDDKL 114
K L
Sbjct: 165 KYPYL 169
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 28.0 bits (63), Expect = 7.7
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 58 DYFNKELRLHARNFPEAVKTLGEIG-DLY-------ELQEKSFEIVQSTHEKALDLARQN 109
D + KEL A N V +GE G D + Q K F EK +L+ Q
Sbjct: 87 DLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYF-------EKQFELSEQT 139
Query: 110 K 110
K
Sbjct: 140 K 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 27.1 bits (60), Expect = 9.0
Identities = 13/96 (13%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 131 NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAV 190
N ++ L + ++ + + L + Y Y+ ++ + + L+L E
Sbjct: 25 NPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR----GENA 78
Query: 191 KTLGEIGDLYELQEKP--FELVVSTHEKALDLARQN 224
+ + + Q + +KAL L
Sbjct: 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural
genomics, protein structure initiative, nysgxrc; 2.80A
{Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Length = 541
Score = 27.8 bits (62), Expect = 9.6
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 203 QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE 262
++ E + + +LD++ D + + L + EL Q +EL +L
Sbjct: 450 RKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAA--EAMGELVQALSELDALMR 507
Query: 263 KLDLNSSSDEEDTILED 279
+L + +D + +LE+
Sbjct: 508 ELGASDEADLQRQLLEE 524
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle,
cell division, chromosome partition, cytoplasm; 2.30A
{Mycobacterium tuberculosis}
Length = 219
Score = 27.3 bits (61), Expect = 9.7
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 257 LKSLEEKLDLNSSSDEEDTILEDSPNIGDDINLEELSDLNSADEESKEDQDK 308
L SL E D+ + DTI + S ++ + +L+ ++++ D D+
Sbjct: 167 LTSLSELPDIAPLLPDVDTIDDLSESLDSEPRFIKLTGELASEQTLSFDVDR 218
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.358
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,792,512
Number of extensions: 406840
Number of successful extensions: 2450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1626
Number of HSP's successfully gapped: 559
Length of query: 480
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 383
Effective length of database: 3,993,456
Effective search space: 1529493648
Effective search space used: 1529493648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.5 bits)