BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8758
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G A DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 26 TKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 84
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 85 SASDDKTLKIWDVSSGKCLK 104
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 125
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLY---SYD--IRQLNSPLN- 112
+ + +E ++ + L H D SA N D +L SYD R ++
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 113 ----VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 84
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 85 SASDDKTLKIWDVSSGKCLK 104
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 91/211 (43%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 125
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLY---SYD--IRQLNSPLN- 112
+ + +E ++ L H D SA N D +L SYD R ++
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 113 ----VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D L+L+ +G Y K ++
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 84
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 85 SASDDKTLKIWDVSSGKCLK 104
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 88/211 (41%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 125
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLYS----------YDIRQLN 108
+ + +E ++ L H D SA N D +L +D
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 109 SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 87
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 88 SASDDKTLKIWDVSSGKCLK 107
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 128
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLY---SYD--IRQLNSPLN- 112
+ + +E ++ + L H D SA N D +L SYD R ++
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 113 ----VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 81
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 82 SASDDKTLKIWDVSSGKCLK 101
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 122
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLYS----------YDIRQLN 108
+ + +E ++ + L H D SA N D +L +D
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 109 SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 87
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 88 SASDDKTLKIWDVSSGKCLK 107
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 128
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLYS----------YDIRQLN 108
+ + +E ++ + L H D SA N D +L +D
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 109 SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 77
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 78 SASDDKTLKIWDVSSGKCLK 97
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 118
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLY---SYD--IRQLNSPLN- 112
+ + +E ++ + L H D SA N D +L SYD R ++
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 113 ----VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 238
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 239 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 269
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-GISDVAWSSDSNLLV 103
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 104 SASDDKTLKIWDVSSGKCLK 123
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 144
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLY---SYD--IRQLNSPLN- 112
+ + +E ++ + L H D SA N D +L SYD R ++
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 113 ----VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 264
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 265 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 295
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 24 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 82
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 83 SASDDKTLKIWDVSSGKCLK 102
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 123
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLYS----------YDIRQLN 108
+ + +E ++ + L H D SA N D +L +D
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 109 SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 243
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 244 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 274
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 87
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 88 SASDDKTLKIWDVSSGKCLK 107
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 128
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLY---SYD--IRQLNSPLN- 112
+ + +E ++ + L H D SA N D +L SYD R ++
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 113 ----VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 28 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 86
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 87 SASDDKTLKIWDVSSGKCLK 106
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 127
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLY---SYD--IRQLNSPLN- 112
+ + +E ++ + L H D SA N D +L SYD R ++
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 113 ----VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 247
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 248 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 278
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 22 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 80
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 81 SASDDKTLKIWDVSSGKCLK 100
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 121
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLY---SYD--IRQLNSPLN- 112
+ + +E ++ + L H D SA N D +L SYD R ++
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 181
Query: 113 ----VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 182 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 241
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 242 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 272
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 81
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 82 SASDDKTLKIWDVSSGKCLK 101
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 122
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLY---SYD--IRQLNSPLN- 112
+ + +E ++ + L H D SA N D +L SYD R ++
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 113 ----VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 40 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 98
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 99 SASDDKTLKIWDVSSGKCLK 118
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 139
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLY---SYD--IRQLNSPLN- 112
+ + +E ++ + L H D SA N D +L SYD R ++
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 113 ----VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 259
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 260 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 290
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 47 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-GISDVAWSSDSNLLV 105
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 106 SASDDKTLKIWDVSSGKCLK 125
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 146
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLY---SYD--IRQLNSPLN- 112
+ + +E ++ + L H D SA N D +L SYD R ++
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 113 ----VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 207 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 266
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 267 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 297
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 84
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 85 SASDDKTLKIWDVSSGKCLK 104
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 125
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLY---SYD--IRQLNSPLN- 112
+ + +E ++ + L H D SA N D +L SYD R ++
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 113 ----VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 84
Query: 178 SASDEMNLRVWKAHASEKLE 197
SASD+ L++W + + L+
Sbjct: 85 SASDDKTLKIWDVSSGKCLK 104
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFV 60
++ WS D+ ++SASD+ L++W + + L ++ SN V ++NP +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLI 125
Query: 61 FTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAA-ANEDFNLY---SYD--IRQLNSPLN- 112
+ + +E ++ + L H D SA N D +L SYD R ++
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 113 ----VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTHT 167
+ D V+ V +SP G+ +A D +L+L+ +G Y K ++
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 168 VWSL-DNKFVISASDEMNLRVWKAHASEKLE 197
+S+ K+++S S++ + +W E ++
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT------VWSL 171
T V SV Y+P G F + G D ++ LY G ++ +++V H+ WS
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 172 DNKFVISASDEMNLRVWKAHASEKLE 197
D + SAS + +++W A+ K+E
Sbjct: 250 DGTKIASASADKTIKIWNV-ATLKVE 274
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 25/206 (12%)
Query: 9 WSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFVFTAAN 65
W D++ ++SAS + L +W ++ + K+ I LRS+ V ++ P +V
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSYTTNKVHAI-----PLRSSWVMTCAYAPSGNYVACGGL 117
Query: 66 EDF-NLYSYDIRQLN--------------SPLNVHKDMTSAAANEDFNLYSYDIRQLNSP 110
++ ++Y+ R+ N S D ++ D +DI +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI-ETGQQ 176
Query: 111 LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWS 170
T V S+ +P R FV+G D S +L+ +G R + T + +
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFF 235
Query: 171 LDNKFVISASDEMNLRVWKAHASEKL 196
+ + SD+ R++ A ++L
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQEL 261
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 25/206 (12%)
Query: 9 WSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFVFTAAN 65
W D++ ++SAS + L +W ++ + K+ I LRS+ V ++ P +V
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSYTTNKVHAI-----PLRSSWVMTCAYAPSGNYVACGGL 117
Query: 66 EDF-NLYSYDIRQLN--------------SPLNVHKDMTSAAANEDFNLYSYDIRQLNSP 110
++ ++Y+ R+ N S D ++ D +DI +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI-ETGQQ 176
Query: 111 LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWS 170
T V S+ +P R FV+G D S +L+ +G R + T + +
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFF 235
Query: 171 LDNKFVISASDEMNLRVWKAHASEKL 196
+ + SD+ R++ A ++L
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQEL 261
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 25/206 (12%)
Query: 9 WSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFVFTAAN 65
W D++ ++SAS + L +W ++ + K+ I LRS+ V ++ P +V
Sbjct: 74 WGTDSRLLVSASQDGKLIIWDSYTTNKVHAI-----PLRSSWVMTCAYAPSGNYVACGGL 128
Query: 66 EDF-NLYSYDIRQLN--------------SPLNVHKDMTSAAANEDFNLYSYDIRQLNSP 110
++ ++Y+ R+ N S D ++ D +DI +
Sbjct: 129 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI-ETGQQ 187
Query: 111 LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWS 170
T V S+ +P R FV+G D S +L+ +G R + T + +
Sbjct: 188 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFF 246
Query: 171 LDNKFVISASDEMNLRVWKAHASEKL 196
+ + SD+ R++ A ++L
Sbjct: 247 PNGNAFATGSDDATCRLFDLRADQEL 272
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 25/206 (12%)
Query: 9 WSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFVFTAAN 65
W D++ ++SAS + L +W ++ + K+ I LRS+ V ++ P +V
Sbjct: 63 WGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-----PLRSSWVMTCAYAPSGNYVACGGL 117
Query: 66 EDF-NLYSYDIRQLN--------------SPLNVHKDMTSAAANEDFNLYSYDIRQLNSP 110
++ ++Y+ R+ N S D ++ D +DI +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI-ETGQQ 176
Query: 111 LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWS 170
T V S+ +P R FV+G D S +L+ +G R + T + +
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFF 235
Query: 171 LDNKFVISASDEMNLRVWKAHASEKL 196
+ + SD+ R++ A ++L
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQEL 261
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 25/206 (12%)
Query: 9 WSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMV---SWNPMEAFVFTAAN 65
W D++ ++SAS + L +W ++ + K+ I LRS+ V ++ P +V
Sbjct: 63 WGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-----PLRSSWVMTCAYAPSGNYVACGGL 117
Query: 66 EDF-NLYSYDIRQLN--------------SPLNVHKDMTSAAANEDFNLYSYDIRQLNSP 110
++ ++Y+ R+ N S D ++ D +DI +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI-ETGQQ 176
Query: 111 LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWS 170
T V S+ +P R FV+G D S +L+ +G R + T + +
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFF 235
Query: 171 LDNKFVISASDEMNLRVWKAHASEKL 196
+ + SD+ R++ A ++L
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQEL 261
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 97/203 (47%), Gaps = 34/203 (16%)
Query: 7 TVWSL----DNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVFT 62
+VW + D + + SASD+ +++W + + L + S+R V+++P + +
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRG--VAFSPDGQTIAS 238
Query: 63 AANED-FNLYSYDIRQLNSPLNVHK-----------DMTSAAANEDFNLYSYDIR-QLNS 109
A+++ L++ + QL L H T A+A++D + ++ QL
Sbjct: 239 ASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ 297
Query: 110 PLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVW 169
L H +S+V V +SP G+ + DK+++L+ +R+ H + + + +VW
Sbjct: 298 TLTGH---SSSVWGVAFSPDGQTIASASDDKTVKLW------NRNGQHLQTLTGHSSSVW 348
Query: 170 SL----DNKFVISASDEMNLRVW 188
+ D + + SASD+ +++W
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLW 371
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 92/199 (46%), Gaps = 26/199 (13%)
Query: 7 TVWSL----DNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVFT 62
+VW + D + + SASD+ +++W + + L + S+R V+++P + +
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRG--VAFSPDGQTIAS 402
Query: 63 AANED-FNLYSYDIRQLNSPLNVHK-----------DMTSAAANEDFNLYSYDIR-QLNS 109
A+++ L++ + QL L H D T A+A++D + ++ QL
Sbjct: 403 ASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ 461
Query: 110 PLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVW 169
L H +S+V V +SP G+ + DK+++L+ G T V +
Sbjct: 462 TLTGH---SSSVRGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTL-TGHSSSVRGVAF 516
Query: 170 SLDNKFVISASDEMNLRVW 188
S D + + SASD+ +++W
Sbjct: 517 SPDGQTIASASDDKTVKLW 535
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 95/196 (48%), Gaps = 34/196 (17%)
Query: 12 DNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNM--VSWNPMEAFVFTAANED-F 68
D + + SASD+ +++W + G + + + S++ V+++P + +A+++
Sbjct: 273 DGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 327
Query: 69 NLYSYDIRQLNSPLNVHK-----------DMTSAAANEDFNLYSYDIR-QLNSPLNVHKD 116
L++ + + L + L H T A+A++D + ++ QL L H
Sbjct: 328 KLWNRNGQHLQT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH-- 384
Query: 117 MTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL----D 172
+S+V V +SP G+ + DK+++L+ +R+ + + + +VW + D
Sbjct: 385 -SSSVRGVAFSPDGQTIASASDDKTVKLW------NRNGQLLQTLTGHSSSVWGVAFSPD 437
Query: 173 NKFVISASDEMNLRVW 188
++ + SASD+ +++W
Sbjct: 438 DQTIASASDDKTVKLW 453
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 94/198 (47%), Gaps = 34/198 (17%)
Query: 10 SLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNM--VSWNPMEAFVFTAANED 67
S D + + SASD+ +++W + G + + + S++ V+++P + +A+++
Sbjct: 25 SPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 79
Query: 68 -FNLYSYDIRQLNSPLNVHK-----------DMTSAAANEDFNLYSYDIR-QLNSPLNVH 114
L++ + QL L H T A+A++D + ++ QL L H
Sbjct: 80 TVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 138
Query: 115 KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL--- 171
+S+V V +SP G+ + DK+++L+ +R+ + + + +VW +
Sbjct: 139 ---SSSVWGVAFSPDGQTIASASDDKTVKLW------NRNGQLLQTLTGHSSSVWGVAFS 189
Query: 172 -DNKFVISASDEMNLRVW 188
D + + SASD+ +++W
Sbjct: 190 PDGQTIASASDDKTVKLW 207
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 94/198 (47%), Gaps = 34/198 (17%)
Query: 10 SLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNM--VSWNPMEAFVFTAANED 67
S D + + SASD+ +++W + G + + + S++ V+++P + + +A+++
Sbjct: 394 SPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK 448
Query: 68 -FNLYSYDIRQLNSPLNVHK-----------DMTSAAANEDFNLYSYDIR-QLNSPLNVH 114
L++ + QL L H T A+A++D + ++ QL L H
Sbjct: 449 TVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 507
Query: 115 KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL--- 171
+S+V V +SP G+ + DK+++L+ +R+ + + + +VW +
Sbjct: 508 ---SSSVRGVAFSPDGQTIASASDDKTVKLW------NRNGQLLQTLTGHSSSVWGVAFS 558
Query: 172 -DNKFVISASDEMNLRVW 188
D + + SAS + +++W
Sbjct: 559 PDGQTIASASSDKTVKLW 576
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL----DN 173
+S+V V +SP G+ + DK+++L+ +R+ + + + +VW + D
Sbjct: 16 SSSVRGVAFSPDGQTIASASDDKTVKLW------NRNGQLLQTLTGHSSSVWGVAFSPDG 69
Query: 174 KFVISASDEMNLRVW 188
+ + SASD+ +++W
Sbjct: 70 QTIASASDDKTVKLW 84
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 88/194 (45%), Gaps = 26/194 (13%)
Query: 10 SLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNM--VSWNPMEAFVFTAANED 67
S D + + SASD+ +++W + G + + + S++ V+++P + +A+++
Sbjct: 107 SPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161
Query: 68 -FNLYSYDIRQLNSPLNVHK-----------DMTSAAANEDFNLYSYDIR-QLNSPLNVH 114
L++ + QL L H T A+A++D + ++ QL L H
Sbjct: 162 TVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 220
Query: 115 KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK 174
+S+V V +SP G+ + DK+++L+ G T V + D +
Sbjct: 221 ---SSSVRGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTL-TGHSSSVNGVAFRPDGQ 275
Query: 175 FVISASDEMNLRVW 188
+ SASD+ +++W
Sbjct: 276 TIASASDDKTVKLW 289
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 37.4 bits (85), Expect = 0.006, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 77/196 (39%), Gaps = 31/196 (15%)
Query: 2 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVF 61
+ V +SLDN+ ++SAS + +++W LG + + W F
Sbjct: 473 KDVLSVAFSLDNRQIVSASRDRTIKLWNT-----LGECKYTISEGGEGHRDWVSCVRF-- 525
Query: 62 TAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAV 121
SP + + SA+ ++ +++ +L S L H T V
Sbjct: 526 ------------------SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH---TGYV 564
Query: 122 TSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASD 181
++V SP G +GG D + L+ +G ++ V H + N++ + A+
Sbjct: 565 STVAVSPDGSLCASGGKDGVVLLWDLAEGKK---LYSLEANSVIHALCFSPNRYWLCAAT 621
Query: 182 EMNLRVWKAHASEKLE 197
E +++W + +E
Sbjct: 622 EHGIKIWDLESKSIVE 637
Score = 35.4 bits (80), Expect = 0.022, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 121 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHS--RDIYHTKRMQHVTHTVWSLDNKFVIS 178
V V S G+ ++G +D LRL+ G S R + HTK V +SLDN+ ++S
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK---DVLSVAFSLDNRQIVS 489
Query: 179 ASDEMNLRVW 188
AS + +++W
Sbjct: 490 ASRDRTIKLW 499
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Query: 92 AANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGH 151
+ + D + +D+R + + + + SV + P G+ F G D + RL+ GH
Sbjct: 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282
Query: 152 SRDIYHTK------RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASE 194
+Y+ + + VT +S+ + + + + VW +E
Sbjct: 283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 70/189 (37%), Gaps = 38/189 (20%)
Query: 9 WSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVFTAANEDF 68
W+ + +++SAS + L VW A S+K I+ W AF
Sbjct: 74 WTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL--------HCPWVMECAFA-------P 118
Query: 69 NLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSP----LNVHKDMTSAVTSV 124
N S L+S ++ FNL S R N P L HK S+ V
Sbjct: 119 NGQSVACGGLDSACSI------------FNLSSQADRDGNMPVSRVLTGHKGYASSCQYV 166
Query: 125 DYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTK-----RMQHVTHTVWSLDNKFVISA 179
T + G D++ L+ G I+ ++ ++ ++ SL+ IS
Sbjct: 167 PDQET--RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224
Query: 180 SDEMNLRVW 188
S + +R+W
Sbjct: 225 SCDTTVRLW 233
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 149 QGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEK 195
QGHS +Y W+ + +++SAS + L VW A S+K
Sbjct: 63 QGHSGKVYSLD---------WTPEKNWIVSASQDGRLIVWNALTSQK 100
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 29/200 (14%)
Query: 11 LDNKFVISASDEMNLRVWKAHASEKLGPI--------------RKVVMSLRSNMVS-WNP 55
L K V+S S + LRVW + L + R+VV MV W+P
Sbjct: 207 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 266
Query: 56 -MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVH 114
E + T +YS ++ + S + + ++ + L H
Sbjct: 267 ETETCLHTLQGHTNRVYSLQFDGIH--------VVSGSLDTSIRVWDVETGNCIHTLTGH 318
Query: 115 KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK 174
+ +TS + D V+G D +++++ G T +
Sbjct: 319 QSLTSGMELKD-----NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 373
Query: 175 FVISASDEMNLRVWKAHASE 194
FVI++SD+ +++W E
Sbjct: 374 FVITSSDDGTVKLWDLKTGE 393
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 76 RQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSP--LNVHKDMTSAVTSVDYSPTGREF 133
R++ P +H SA + ++ +L SP L H D +T + + G
Sbjct: 77 RKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDD--HVITCLQFC--GNRI 132
Query: 134 VAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWS--LDNKFVISASDEMNLRVWKAH 191
V+G D +L+++ A G + + T VWS + + +IS S + L+VW A
Sbjct: 133 VSGSDDNTLKVWSAVTGKC-----LRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 187
Query: 192 ASEKL 196
E +
Sbjct: 188 TGECI 192
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 133 FVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHA 192
++G D++L+++ A G + HT T L K V+S S + LRVW
Sbjct: 172 IISGSTDRTLKVWNAETG---ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 228
Query: 193 SEKL 196
+ L
Sbjct: 229 GQCL 232
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQ-HVTHTVWSLDNKFV 176
T AV +S G+ + G DK+L+++ A G + K + V +S D++F+
Sbjct: 621 TDAVYHACFSEDGQRIASCGADKTLQVFKAETGEK--LLEIKAHEDEVLCCAFSTDDRFI 678
Query: 177 ISASDEMNLRVWKAHASE 194
+ S + +++W + E
Sbjct: 679 ATCSVDKKVKIWNSMTGE 696
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 26/166 (15%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPI--RKVVMSLRS---------NMVS 52
V H +S D+K + S S + L++W A ++ + I ++ ++L S
Sbjct: 752 VNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCS 811
Query: 53 WNPMEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFN---------LYSYD 103
W+ A + AA ++ +DI +H S DF+ L Y
Sbjct: 812 WSADGARIMVAAKN--KIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYC 869
Query: 104 IRQLN----SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 145
+ N S + + S V V +SP G F+ D+++RL+
Sbjct: 870 VELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLW 915
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVW-------- 169
T V SV +SP R+ V+GG D +LR++ + HT + HT W
Sbjct: 109 TKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG----ECMHT--LSRGAHTDWVSCVRFSP 162
Query: 170 SLDNKFVISASDEMNLRVW 188
SLD ++S + ++VW
Sbjct: 163 SLDAPVIVSGGWDNLVKVW 181
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Query: 66 EDFNLYSYDIRQLN-SPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSV 124
+ F+ + D+ L+ +P S ++ ++ Q H+ S V SV
Sbjct: 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE---SDVNSV 246
Query: 125 DYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTV-WSLDNKFVISASDEM 183
Y P+G F +G D + RLY IY + + +V +SL + + + ++
Sbjct: 247 RYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY 306
Query: 184 NLRVW 188
+ VW
Sbjct: 307 TINVW 311
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 87 DMTSAAANEDFNLYSYDIR--QLNSPLNVHKDMTSAVTSVDYSP--TGREFVAGGYDKSL 142
DM A+ D +D+ QL + H + V +D +P TG FV+GG DK
Sbjct: 166 DMQILTASGDGTCALWDVESGQLLQSFHGHG---ADVLCLDLAPSETGNTFVSGGCDKKA 222
Query: 143 RLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 196
++ G + T + + + F S SD+ R++ A ++
Sbjct: 223 MVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFA-SGSDDATCRLYDLRADREV 275
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 121 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISAS 180
+ S+DY P+G + V+G D+++R++ G + + T V D K++ + S
Sbjct: 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS-LTLSIEDGVTTVAVSPGDGKYIAAGS 226
Query: 181 DEMNLRVWKAHASEKLEH 198
+ +RVW + +E
Sbjct: 227 LDRAVRVWDSETGFLVER 244
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/228 (16%), Positives = 93/228 (40%), Gaps = 41/228 (17%)
Query: 3 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFV-- 60
++ +S D KF+ + +++ +R+W RK+VM L+ + ++ F
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIEN-------RKIVMILQGHEQDIYSLDYFPSG 177
Query: 61 --FTAANEDFNLYSYDIR--QLNSPLNVHKDMTSAAANEDFNLY---------------- 100
+ + D + +D+R Q + L++ +T+ A + Y
Sbjct: 178 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Query: 101 -SYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTK 159
+ + +L+S +V SV ++ G+ V+G D+S++L+ +++ T
Sbjct: 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297
Query: 160 -----RMQHVTHTVWSL------DNKFVISASDEMNLRVWKAHASEKL 196
+ ++ H + L ++++++S S + + W + L
Sbjct: 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 39/192 (20%)
Query: 4 VTHTVWSLDNKFVI-SASDEMNLRVWKAHASEKLGPIRKVVMSL-----RSNMVSWNPME 57
V W N VI S S++ + VW+ + P+R+ V++L R +V+W+P
Sbjct: 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 58 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDM 117
V +A D + +D+ + L + D VH D
Sbjct: 144 QNVLLSAGCDNVILVWDVGTGAAVLTLGPD-------------------------VHPD- 177
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG---HSRDIYHTKRMQHVTHTVWSLDNK 174
+ SVD+S G DK +R+ +G +D H H V+ + K
Sbjct: 178 --TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG--TRPVHAVFVSEGK 233
Query: 175 FVISASDEMNLR 186
+ + M+ R
Sbjct: 234 ILTTGFSRMSER 245
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 15/142 (10%)
Query: 60 VFTAANED--FNLYSYDIRQLNSPLNVHKDMTS-----------AAANEDFNLYSYDIRQ 106
V +A+ED ++ Y+ L H D A+ + D + +D +
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 107 LNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH 166
+H V+SV P G V+ DK+++++ G+ + T + V
Sbjct: 182 FECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRM 239
Query: 167 TVWSLDNKFVISASDEMNLRVW 188
+ D + S S++ +RVW
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVW 261
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 86/211 (40%), Gaps = 37/211 (17%)
Query: 16 VISASDEMNLRVWKAHASEKLGPI--RKVVMSLRSNM---VSWNPMEAFVFTAANEDFNL 70
++SASD+ + +W +A K G I K + + S + V+W+ + +F + +D L
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 71 YSYDIR----------------QLNS-PLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNV 113
+D R ++N N + + A + D + +D+R L L+
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 114 HKDMTSAVTSVDYSPTGREFVA-GGYDKSLRLY----LAHQGHSRD---------IYHTK 159
+ + V +SP +A G D+ L ++ + + + D H
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 160 RMQHVTHTVWSLDNKFVISASDEMNL-RVWK 189
++ W+ + +VI + E N+ ++W+
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 86/211 (40%), Gaps = 37/211 (17%)
Query: 16 VISASDEMNLRVWKAHASEKLGPI--RKVVMSLRSNM---VSWNPMEAFVFTAANEDFNL 70
++SASD+ + +W +A K G I K + + S + V+W+ + +F + +D L
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 71 YSYDIR----------------QLNS-PLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNV 113
+D R ++N N + + A + D + +D+R L L+
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 114 HKDMTSAVTSVDYSPTGREFVA-GGYDKSLRLY----LAHQGHSRD---------IYHTK 159
+ + V +SP +A G D+ L ++ + + + D H
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 160 RMQHVTHTVWSLDNKFVISASDEMNL-RVWK 189
++ W+ + +VI + E N+ ++W+
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 405
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 39/192 (20%)
Query: 4 VTHTVWSLDNKFVI-SASDEMNLRVWKAHASEKLGPIRKVVMSL-----RSNMVSWNPME 57
V W N VI S S++ + VW+ + P+R+ V++L R +V+W+P
Sbjct: 84 VLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 58 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDM 117
V +A D + +D+ + L + D VH D
Sbjct: 144 QNVLLSAGXDNVILVWDVGTGAAVLTLGPD-------------------------VHPD- 177
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG---HSRDIYHTKRMQHVTHTVWSLDNK 174
+ SVD+S G DK +R+ +G +D H H V+ + K
Sbjct: 178 --TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG--TRPVHAVFVSEGK 233
Query: 175 FVISASDEMNLR 186
+ + M+ R
Sbjct: 234 ILTTGFSRMSER 245
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 37/211 (17%)
Query: 16 VISASDEMNLRVWKAHASEKLGPI--RKVVMSLRSNMV---SWNPMEAFVFTAANEDFNL 70
++SASD+ + +W A K G + K + + + +V SW+ + +F + +D L
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 71 YSYDIRQLNSPLNVHK-DMTSAAANE-DFNLYS---------------YDIRQLNSPLNV 113
+D R N+ H D +A N FN YS +D+R L L+
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 312
Query: 114 HKDMTSAVTSVDYSPTGREFVA-GGYDKSLRLY-LAHQGHSRD------------IYHTK 159
+ + V +SP +A G D+ L ++ L+ G + H
Sbjct: 313 FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGG 372
Query: 160 RMQHVTHTVWSLDNKFVISASDEMNL-RVWK 189
++ W+ + +VI + E N+ +VW+
Sbjct: 373 HTAKISDFSWNPNEPWVICSVSEDNIMQVWQ 403
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/214 (19%), Positives = 86/214 (40%), Gaps = 36/214 (16%)
Query: 3 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVS--WNPMEAFV 60
VT WS D +++ + LR+W K G + V+ R+ +VS WN +
Sbjct: 110 QVTCLAWSHDGNSIVTGVENGELRLWN-----KTGALLNVLNFHRAPIVSVKWNKDGTHI 164
Query: 61 FTAANED----FNLYSYDIRQ-------LNSPLNVHKDMTSAAANEDFN----------- 98
+ E+ +N+ S + Q S +N + D
Sbjct: 165 ISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG 224
Query: 99 ----LYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRD 154
++ Y I + +P ++ ++++ T + ++ D +LR++ G+S++
Sbjct: 225 PKGAIFVYQITE-KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN 283
Query: 155 IYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVW 188
++ Q + W D+K VIS S + ++R+W
Sbjct: 284 CFY-GHSQSIVSASWVGDDK-VISCSMDGSVRLW 315
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 121 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHS--RDIYHTKRMQHVTHTVWSLDNKFVIS 178
V+ V S G+ ++G +D +LRL+ G + R + HTK + V +S DN+ ++S
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV---AFSSDNRQIVS 145
Query: 179 ASDEMNLRVW 188
S + +++W
Sbjct: 146 GSRDKTIKLW 155
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWK-----------AHASEKLGPI-----RKVVMSLR 47
V+ V S D +F +S S + LR+W H + L R++V R
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 48 SNMVS-WNPMEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQ 106
+ WN + +T +E + + +R SP + + + S ++ +++ +
Sbjct: 149 DKTIKLWNTLGVCKYTVQDESHSEWVSCVR--FSPNSSNPIIVSCGWDKLVKVWNLANCK 206
Query: 107 LNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH 166
L + H T + +V SP G +GG D L+ ++G + +Y +
Sbjct: 207 LKTN---HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--KHLYTLDGGDIINA 261
Query: 167 TVWSLDNKFVISASDEMNLRVW 188
+S N++ + A+ ++++W
Sbjct: 262 LCFS-PNRYWLCAATGPSIKIW 282
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 121 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHS--RDIYHTKRMQHVTHTVWSLDNKFVIS 178
V+ V S G+ ++G +D +LRL+ G + R + HTK + V +S DN+ ++S
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV---AFSSDNRQIVS 122
Query: 179 ASDEMNLRVW 188
S + +++W
Sbjct: 123 GSRDKTIKLW 132
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWK-----------AHASEKLGPI-----RKVVMSLR 47
V+ V S D +F +S S + LR+W H + L R++V R
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 48 SNMVS-WNPMEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQ 106
+ WN + +T +E + + +R SP + + + S ++ +++ +
Sbjct: 126 DKTIKLWNTLGVCKYTVQDESHSEWVSCVR--FSPNSSNPIIVSCGWDKLVKVWNLANCK 183
Query: 107 LNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH 166
L + H T + +V SP G +GG D L+ ++G + +Y +
Sbjct: 184 LKTN---HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--KHLYTLDGGDIINA 238
Query: 167 TVWSLDNKFVISASDEMNLRVW 188
+S N++ + A+ ++++W
Sbjct: 239 LCFS-PNRYWLCAATGPSIKIW 259
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 119 SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVIS 178
S V S+ ++ G+ FV+ G D L + G S I+ +K V S+D+K++++
Sbjct: 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQSKESSSVLSCDISVDDKYIVT 323
Query: 179 ASDEMNLRVWK 189
S + V++
Sbjct: 324 GSGDKKATVYE 334
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 27/148 (18%)
Query: 12 DNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNM-----VSWNPMEAFVFTAANE 66
D +I + L +W A P ++ L S+ ++ +P F+ +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAA-----PTPRIKAELTSSAPACYALAISPDSKVCFSCCS- 161
Query: 67 DFNLYSYD------IRQLN------SPLNVHKDMTSA-AANEDFNLYSYDIRQLNSPLNV 113
D N+ +D +RQ S +++ D T D + S+D+R+ L
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-GRQLQQ 220
Query: 114 HKDMTSAVTSVDYSPTGREFVAGGYDKS 141
H D TS + S+ Y PTG E++A G + S
Sbjct: 221 H-DFTSQIFSLGYCPTG-EWLAVGMESS 246
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 89/214 (41%), Gaps = 37/214 (17%)
Query: 13 NKFVISASDEMNLRVWKAHASEKLGPI--RKVVMSLRSNM---VSWNPMEAFVFTAANED 67
N +++SASD+ + +W +A+ K + K + + + + V+W+ + +F + +D
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253
Query: 68 FNLYSYDIRQLNSPLNVHK-DMTSAAANE-DFNLYS---------------YDIRQLNSP 110
L +D R N+ H D +A N FN YS +D+R L
Sbjct: 254 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 313
Query: 111 LNVHKDMTSAVTSVDYSPTGREFVA-GGYDKSLRLY----LAHQGHSRD---------IY 156
L+ + + V +SP +A G D+ L ++ + + + D
Sbjct: 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 373
Query: 157 HTKRMQHVTHTVWSLDNKFVISASDEMNL-RVWK 189
H ++ W+ + ++I + E N+ +VW+
Sbjct: 374 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 89/214 (41%), Gaps = 37/214 (17%)
Query: 13 NKFVISASDEMNLRVWKAHASEKLGPI--RKVVMSLRSNM---VSWNPMEAFVFTAANED 67
N +++SASD+ + +W +A+ K + K + + + + V+W+ + +F + +D
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 257
Query: 68 FNLYSYDIRQLNSPLNVHK-DMTSAAANE-DFNLYS---------------YDIRQLNSP 110
L +D R N+ H D +A N FN YS +D+R L
Sbjct: 258 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 317
Query: 111 LNVHKDMTSAVTSVDYSPTGREFVA-GGYDKSLRLY----LAHQGHSRD---------IY 156
L+ + + V +SP +A G D+ L ++ + + + D
Sbjct: 318 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 377
Query: 157 HTKRMQHVTHTVWSLDNKFVISASDEMN-LRVWK 189
H ++ W+ + ++I + E N ++VW+
Sbjct: 378 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 411
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 89/214 (41%), Gaps = 37/214 (17%)
Query: 13 NKFVISASDEMNLRVWKAHASEKLGPI--RKVVMSLRSNM---VSWNPMEAFVFTAANED 67
N +++SASD+ + +W +A+ K + K + + + + V+W+ + +F + +D
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 255
Query: 68 FNLYSYDIRQLNSPLNVHK-DMTSAAANE-DFNLYS---------------YDIRQLNSP 110
L +D R N+ H D +A N FN YS +D+R L
Sbjct: 256 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 315
Query: 111 LNVHKDMTSAVTSVDYSPTGREFVA-GGYDKSLRLY----LAHQGHSRD---------IY 156
L+ + + V +SP +A G D+ L ++ + + + D
Sbjct: 316 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 375
Query: 157 HTKRMQHVTHTVWSLDNKFVISASDEMNL-RVWK 189
H ++ W+ + ++I + E N+ +VW+
Sbjct: 376 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 409
>pdb|2PFZ|A Chain A, Crystal Structure Of Dctp6, A Bordetella Pertussis
Extracytoplasmic Solute Receptor Binding Pyroglutamic
Acid
Length = 301
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 126 YSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWS----LDNKFVISASD 181
Y G F+A GYD S +LY A + ++ M + W N+ + SD
Sbjct: 76 YELDGLPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQGIFANRDIKQVSD 135
Query: 182 EMNLRVWKAHA 192
L+ W+A++
Sbjct: 136 MKGLK-WRAYS 145
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 64/167 (38%), Gaps = 26/167 (15%)
Query: 13 NKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVFTAANEDFNLYS 72
+ +S ++ + +W + I V+W+P + F +E N+
Sbjct: 194 DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL 253
Query: 73 YDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP---- 128
+I+ +S TSA +++ +Y ++ +D T AV D+S
Sbjct: 254 VNIKNPDSA------QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD 307
Query: 129 -TGREFVAG--------------GYD-KSLRLYLAHQGHSRDIYHTK 159
+ R+FV G G+D K L +L +G + ++ TK
Sbjct: 308 LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENLIATK 354
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 134 VAGGYDKSLRLYLAHQG--HSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVW 188
++ +DK+LRL+ G + R + H + V +S DN+ ++SA E +++W
Sbjct: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSV---AFSPDNRQILSAGAEREIKLW 145
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 23/164 (14%)
Query: 3 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKV-----VMSLRSN--MVSWNP 55
V +S DN+ ++SA E +++W K K V +R + M S N
Sbjct: 120 EVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANK 179
Query: 56 MEAFV--FTAANEDFNLYSYDIR-QLNSPLNVHKDMTS-----------AAANEDFNLYS 101
++ F F + D L ++ Q+ H+ + A +D L
Sbjct: 180 VQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLI 239
Query: 102 YDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 145
+DI L P D S + + ++P ++VA G D+ ++++
Sbjct: 240 WDILNLTYPQR-EFDAGSTINQIAFNPK-LQWVAVGTDQGVKIF 281
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 130 GREFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRV 187
G V+G YD +L ++ Q I HT R + T++ + K ISAS + +R+
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDR---IYSTIYDHERKRCISASXDTTIRI 336
Query: 188 WKAHASE 194
W E
Sbjct: 337 WDLENGE 343
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 116 DMTSAVTSVDYSPTGREFVA--GGYDKSLRLY-LAHQGHSRDIYHTKRMQHVTHTVWSLD 172
D S VTS+ +SP +E ++ G D +L ++ + G ++ + V ++ S D
Sbjct: 301 DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD 360
Query: 173 NKFVISASDEMNLRVWKAHASEKLE 197
+ + +A+ + NL+ W+ + + ++
Sbjct: 361 GRILSTAASDENLKFWRVYDGDHVK 385
>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With
Neurolysin Specificity In Neurotensin Cleavage Site
Length = 674
Score = 27.7 bits (60), Expect = 4.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 134 VAGGYDKSLRLYLAHQGHSRDIYHTKRMQ 162
+AGGYD YL + +S D++HT+ Q
Sbjct: 586 LAGGYDAQYYGYLWSEVYSMDMFHTRFKQ 614
>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
Length = 674
Score = 27.7 bits (60), Expect = 4.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 134 VAGGYDKSLRLYLAHQGHSRDIYHTKRMQ 162
+AGGYD YL + +S D++HT+ Q
Sbjct: 586 LAGGYDAQYYGYLWSEVYSMDMFHTRFKQ 614
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 91 AAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG 150
+ + D L +D+ Q+ L + T + S Y + ++ D ++R++ G
Sbjct: 284 VSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 342
Query: 151 HSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAH 191
++ +T + + L +KF++SA+ + ++R W A+
Sbjct: 343 ---ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 380
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 130 GREFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRV 187
G V+G YD +L ++ Q I HT R + T++ + K ISAS + +R+
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR---IYSTIYDHERKRCISASMDTTIRI 336
Query: 188 WKAHASE 194
W E
Sbjct: 337 WDLENGE 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.128 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,950,838
Number of Sequences: 62578
Number of extensions: 222999
Number of successful extensions: 784
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 175
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)