RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8758
(198 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 65.0 bits (159), Expect = 7e-13
Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 28/203 (13%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIR---KVVMSLRSNMVSWNPMEAFV 60
V S D ++ S S + +R+W E + + V S V+++P +
Sbjct: 54 VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSS-----VAFSPDG-RI 107
Query: 61 FTAANEDFNLYSYDIR--QLNSPLNVHKD-----------MTSAAANEDFNLYSYDIRQL 107
++++ D + +D+ + + L H D A++++D + +D+R
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167
Query: 108 NSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQHVT 165
+ T V SV +SP G + ++ D +++L+ G H V
Sbjct: 168 -KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG---VN 223
Query: 166 HTVWSLDNKFVISASDEMNLRVW 188
+S D + S S++ +RVW
Sbjct: 224 SVAFSPDGYLLASGSEDGTIRVW 246
Score = 51.2 bits (123), Expect = 6e-08
Identities = 43/212 (20%), Positives = 84/212 (39%), Gaps = 42/212 (19%)
Query: 5 THTVWSL----DNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRS-----NMVSWNP 55
T V S+ D + + S+S + ++VW K + +LR N V+++P
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDV-------ETGKCLTTLRGHTDWVNSVAFSP 145
Query: 56 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTS--------------AAANEDFNLYS 101
FV +++ D + +D+R + T +++ D +
Sbjct: 146 DGTFVASSSQ-DGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203
Query: 102 YDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRM 161
+D+ L + + V SV +SP G +G D ++R++ R + +
Sbjct: 204 WDLSTG-KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW-----DLRTGECVQTL 257
Query: 162 QHVTHTVWSL----DNKFVISASDEMNLRVWK 189
T++V SL D K + S S + +R+W
Sbjct: 258 SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 47.3 bits (113), Expect = 1e-06
Identities = 34/161 (21%), Positives = 71/161 (44%), Gaps = 29/161 (18%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRS-----NMVSWNPMEA 58
V +S D FV S+S + +++W K V +L N V+++P
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTG-------KCVATLTGHTGEVNSVAFSPDGE 190
Query: 59 FVFTAANEDF-NLYSYDIRQLNSPLNVHKD-----------MTSAAANEDFNLYSYDIR- 105
+ +++++ L+ + L H++ A+ +ED + +D+R
Sbjct: 191 KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250
Query: 106 -QLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 145
+ L+ H T++VTS+ +SP G+ +G D ++R++
Sbjct: 251 GECVQTLSGH---TNSVTSLAWSPDGKRLASGSADGTIRIW 288
Score = 43.1 bits (102), Expect = 3e-05
Identities = 42/204 (20%), Positives = 82/204 (40%), Gaps = 40/204 (19%)
Query: 9 WSLDNKFVISASDEMNLRVWKAHASEKL-------GPIRKVVMSLRSNMVSWNPMEAFVF 61
+S D K + + S + ++VW E L GP+R V S ++
Sbjct: 17 FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT---------YLA 67
Query: 62 TAANEDF-NLYSYDIRQLNSPLNVHKDMTS-----------AAANEDFNLYSYDIR--QL 107
+ +++ L+ + + L H S ++++ D + +D+ +
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127
Query: 108 NSPLNVHKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQGHSRDIY--HTKRMQHV 164
+ L H D V SV +SP G FVA D +++L+ G HT + V
Sbjct: 128 LTTLRGHTD---WVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183
Query: 165 THTVWSLDNKFVISASDEMNLRVW 188
+S D + ++S+S + +++W
Sbjct: 184 A---FSPDGEKLLSSSSDGTIKLW 204
Score = 41.6 bits (98), Expect = 1e-04
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH---VTHTVWSLDNK 174
T VT V +SP G+ G D +++++ G H V S D
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADGT 64
Query: 175 FVISASDEMNLRVWKAHASEKL 196
++ S S + +R+W E +
Sbjct: 65 YLASGSSDKTIRLWDLETGECV 86
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 52.0 bits (123), Expect = 3e-08
Identities = 45/214 (21%), Positives = 88/214 (41%), Gaps = 24/214 (11%)
Query: 2 QHVTHTVWSLDNKFVISASDE-MNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFV 60
+ VT +S D K + S S +++W + L + + S ++++P +
Sbjct: 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS--LAFSPDGGLL 213
Query: 61 FTAANEDFNLYSYDIRQ---LNSPLNVHKDMTS----------AAANEDFNLYSYDIRQL 107
+ + D + +D+ L S L+ H D A+ + D + +D+R
Sbjct: 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSS 273
Query: 108 NSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT 167
+S L +S+V SV +SP G+ +G D ++RL+ G + + ++
Sbjct: 274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG---KLLSSLTLKGHEGP 330
Query: 168 VWSLD-----NKFVISASDEMNLRVWKAHASEKL 196
V SL + V SD+ +R+W + L
Sbjct: 331 VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364
Score = 46.6 bits (109), Expect = 3e-06
Identities = 38/201 (18%), Positives = 75/201 (37%), Gaps = 21/201 (10%)
Query: 7 TVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVFTAANE 66
+ +S D + S S + +R+W +S L S V+++P + + ++
Sbjct: 247 SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG-HSSSVLSVAFSPDGKLLASGSS- 304
Query: 67 DFNLYSYDIRQLNSP----------------LNVHKDMTSAAANEDFNLYSYDIRQLNSP 110
D + +D+ + + + ++D + +D+R
Sbjct: 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364
Query: 111 LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWS 170
+ S V SV +SP GR +G D ++RL+ G + VT +S
Sbjct: 365 KTLEGH--SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR-VTSLDFS 421
Query: 171 LDNKFVISASDEMNLRVWKAH 191
D K + S S + +R+W
Sbjct: 422 PDGKSLASGSSDNTIRLWDLK 442
Score = 41.2 bits (95), Expect = 2e-04
Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 13/156 (8%)
Query: 2 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVF 61
V +S D K + S S + +R+W + L + + +S++P + +
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344
Query: 62 TAANEDFNLYSYDIRQLNSPLNVH------------KDMTSAAANEDFNLYSYDIRQLNS 109
+ ++D + +D+R + ++ + D + +D+ +
Sbjct: 345 SGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL 404
Query: 110 PLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 145
N+ TS VTS+D+SP G+ +G D ++RL+
Sbjct: 405 LRNLDG-HTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
Score = 38.1 bits (87), Expect = 0.002
Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
Query: 69 NLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP 128
L+ + +L + A+++ D + +D+ + + + +VTS+ +SP
Sbjct: 106 GLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP 165
Query: 129 TGREFVAGG-YDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI-SASDEMNLR 186
G+ +G D +++L+ G V+ +S D +I S S + +R
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT-DPVSSLAFSPDGGLLIASGSSDGTIR 224
Query: 187 VWKAHASEKL 196
+W + L
Sbjct: 225 LWDLSTGKLL 234
Score = 28.9 bits (63), Expect = 1.7
Identities = 15/131 (11%), Positives = 47/131 (35%), Gaps = 10/131 (7%)
Query: 69 NLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYD------IRQLNSPLNVHKDMTSAVT 122
S +++ +++ + + + + + + + + ++T
Sbjct: 10 ENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSIT 69
Query: 123 SVDYSPTGREFVAGGYDKSLRLYLAHQGHS--RDIYHTKRMQHVTHTVWSLDNKFVISAS 180
S+ +SP G ++G D +++L+ G + + + S D ++ AS
Sbjct: 70 SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129
Query: 181 DE--MNLRVWK 189
+++W
Sbjct: 130 SSLDGTVKLWD 140
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 36.1 bits (84), Expect = 5e-04
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 109 SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 145
L K T VTSV +SP G+ +G D +++L+
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 27.3 bits (61), Expect = 0.78
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWK 29
VT +S D K++ S SD+ +++W
Sbjct: 15 VTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 27.3 bits (61), Expect = 0.78
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 164 VTHTVWSLDNKFVISASDEMNLRVWK 189
VT +S D K++ S SD+ +++W
Sbjct: 15 VTSVAFSPDGKYLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 35.0 bits (81), Expect = 0.001
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 109 SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 145
L K T VTSV +SP G +G D ++R++
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 27.3 bits (61), Expect = 0.85
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWK 29
VT +S D + S SD+ +RVW
Sbjct: 14 VTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 27.3 bits (61), Expect = 0.85
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 164 VTHTVWSLDNKFVISASDEMNLRVWK 189
VT +S D + S SD+ +RVW
Sbjct: 14 VTSVAFSPDGNLLASGSDDGTVRVWD 39
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 35.3 bits (81), Expect = 0.014
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 23/115 (20%)
Query: 6 HTVWSLDNKF-------VISASDEMNLRVWK-AHASEKLGPIRKVVMSLRS-----NMVS 52
HT LD +F + S S+++ +RVW+ H E + I+ L+ +++
Sbjct: 73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132
Query: 53 WNPMEAFVFTAANEDFNLYSYDIR------QLNSPLNVHKDMTSAAANEDFNLYS 101
WNPM ++ ++ D + +DI Q+N P K ++S N NL S
Sbjct: 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP----KKLSSLKWNIKGNLLS 183
>gnl|CDD|226531 COG4044, COG4044, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 247
Score = 31.0 bits (70), Expect = 0.32
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 128 PTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTV 168
R + G + + L GH RD+ +R+ + V
Sbjct: 171 SYDRLIINGATREEIERALNRTGHGRDVVRIERLGLLETMV 211
>gnl|CDD|220455 pfam09883, DUF2110, Uncharacterized protein conserved in archaea
(DUF2110). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 226
Score = 30.4 bits (69), Expect = 0.50
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 128 PTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRM 161
PT R V +R L GH RDI +R+
Sbjct: 160 PTDRLNVNSATRSEVRAALNRAGHGRDIVTIERL 193
>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD)
repeat [General function prediction only].
Length = 561
Score = 29.8 bits (67), Expect = 0.87
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 98 NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFV 134
NLY I + + P V KD+ V + P F
Sbjct: 256 NLYLLRITERSIP--VEKDLKDPVHDFTWEPLSSRFA 290
>gnl|CDD|236474 PRK09350, PRK09350, poxB regulator PoxA; Provisional.
Length = 306
Score = 28.4 bits (64), Expect = 2.5
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 121 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRM 161
VT + P FV G + L+L + YH KR+
Sbjct: 37 VTDIHLVPFETRFVGPGASQGKTLWL----MTSPEYHMKRL 73
>gnl|CDD|236796 PRK10922, PRK10922, 3-octaprenyl-4-hydroxybenzoate decarboxylase;
Provisional.
Length = 497
Score = 27.6 bits (61), Expect = 4.9
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 157 HTKRMQHVTHTVWS-----LDNKFVISASDEMNLRVWK 189
H KR V VWS + KFVI D++N R W
Sbjct: 377 HAKR---VMMGVWSFLRQFMYTKFVIVCDDDVNARDWN 411
>gnl|CDD|219372 pfam07314, DUF1461, Protein of unknown function (DUF1461). This
family contains a number of hypothetical bacterial
proteins of unknown function approximately 200 residues
long. These are possibly integral membrane proteins.
Length = 180
Score = 27.2 bits (61), Expect = 5.0
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 60 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFN-LYSYDIRQLNSPLNVHKDMT 118
V N + LY +I +LN P V M+ ++N L Y LN+P M
Sbjct: 20 VLLTINFSWLLYYLEIEKLNLPKVV--GMSIDQIMYNYNQLMDY----LNNPFEKLLKMP 73
Query: 119 SAVTSVD 125
+S
Sbjct: 74 DFPSSAS 80
>gnl|CDD|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin
oxidoreductases use flavin as a substrate in mediating
electron transfer from iron complexes or iron proteins.
Structurally similar to ferredoxin reductases, but with
only 15% sequence identity, flavin reductases reduce
FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a
substrate, rather than a tightly bound prosthetic group
as in flavoenzymes; weaker binding is due to the absence
of a binding site for the AMP moeity of FAD.
Length = 224
Score = 27.1 bits (61), Expect = 5.4
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 133 FVAGG----YDKSLRLYLAHQGHSRDIY 156
+AGG KS+ +L QG R I+
Sbjct: 103 LIAGGTGFAPIKSILEHLLAQGSKRPIH 130
>gnl|CDD|217428 pfam03213, Pox_P35, Poxvirus P35 protein.
Length = 325
Score = 27.3 bits (61), Expect = 5.7
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 15/83 (18%)
Query: 78 LNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVD---YSPTGREFV 134
L +H + S + DI QL L+ + T S + YS TG
Sbjct: 131 LRDITTIHPLIKSMKEK------NIDILQLRETLHNNNVRTLLNQSGNPSLYSYTG---- 180
Query: 135 AGGYDKSLRLYLAHQGHSRDIYH 157
GYD SL Y+ ++ +Y
Sbjct: 181 --GYDVSLSAYIIRVSTAKKLYA 201
>gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in
eukaryotes is mediated by at least in part by the
budding and fusion of intracellular transport vesicles
that selectively carry cargo proteins and lipids from
donor to acceptor organelles. The two main classes of
vesicular carriers within the endocytic and the
biosynthetic pathways are COP- and clathrin-coated
vesicles. Formation of COPII vesicles requires the
ordered assembly of the coat built from several
cytosolic components GTPase Sar1, complexes of
Sec23-Sec24 and Sec13-Sec31. The process is initiated by
the conversion of GDP to GTP by the GTPase Sar1 which
then recruits the heterodimeric complex of Sec23 and
Sec24. This heterodimeric complex generates the
pre-budding complex. The final step leading to membrane
deformation and budding of COPII-coated vesicles is
carried by the heterodimeric complex Sec13-Sec31. The
members of this CD belong to the Sec23-like family. Sec
23 is very similar to Sec24. The Sec23 and Sec24
polypeptides fold into five distinct domains: a
beta-barrel, a zinc finger, a vWA or trunk, an all
helical region and a carboxy Gelsolin domain. The
members of this subgroup lack the consensus MIDAS motif
but have the overall Para-Rossmann type fold that is
characteristic of this superfamily.
Length = 267
Score = 26.9 bits (60), Expect = 6.3
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 19/58 (32%)
Query: 105 RQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY------LAHQGHSRDIY 156
+L P+ H D+ D + Y K+++ Y LA GH+ DI+
Sbjct: 183 TELKDPIRSHHDIDK-----DNAKY--------YKKAVKFYDSLAKRLAANGHAVDIF 227
>gnl|CDD|236833 PRK11059, PRK11059, regulatory protein CsrD; Provisional.
Length = 640
Score = 27.1 bits (61), Expect = 7.6
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 72 SYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVD 125
D+ Q + P+ + S +LY R+L+ PL H M+ + VD
Sbjct: 80 EVDLSQGDKPVYSFQRPASYRPQGSSSLY----RELSLPLLKHPGMSLRLKYVD 129
>gnl|CDD|211710 TIGR02035, D_Ser_am_lyase, D-serine ammonia-lyase. This family
consists of D-serine ammonia-lyase (EC 4.3.1.18), a
pyridoxal-phosphate enzyme that converts D-serine to
pyruvate and NH3. This enzyme is also called D-serine
dehydratase and D-serine deaminase and was previously
designated EC 4.2.1.14. It is homologous to an enzyme
that acts on threonine and may itself act weakly on
threonine [Energy metabolism, Amino acids and amines].
Length = 431
Score = 26.7 bits (59), Expect = 9.3
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 156 YHTKRMQHVTHTVWSLDNKFVISASDEMN 184
+ +++++ TH VW+ V +EMN
Sbjct: 402 FSAEQLRNATHLVWATGGGMV--PEEEMN 428
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.128 0.385
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,724,045
Number of extensions: 849681
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 35
Length of query: 198
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 106
Effective length of database: 6,857,034
Effective search space: 726845604
Effective search space used: 726845604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)